RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16847
(208 letters)
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 238
Score = 172 bits (436), Expect = 1e-54
Identities = 125/183 (68%), Positives = 159/183 (86%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILA 60
MEAVKQGSATVGLK+KTHAV++ALKRA SELAAHQKKI+ +D+H+G+S AGLTADAR+L
Sbjct: 23 MEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLC 82
Query: 61 RFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIY 120
FMR ECL+ ++ LPV RL+S++G+K Q+ TQRY +RPYGVGLL+AGYDD GPHI+
Sbjct: 83 NFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIF 142
Query: 121 QTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSEL 180
QTCPS+NY+D +AM+IG+RSQSARTYLE+ +++F E +L E+VKHGLRALR+TLP + +L
Sbjct: 143 QTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDL 202
Query: 181 TTK 183
TTK
Sbjct: 203 TTK 205
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 159 bits (402), Expect = 2e-49
Identities = 84/180 (46%), Positives = 121/180 (67%), Gaps = 2/180 (1%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILA 60
+EA+KQGS TVGL++ THAV++ALKR A EL+++QKKII D+HMGLS AGL DAR+L+
Sbjct: 25 LEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQKKIIKCDEHMGLSLAGLAPDARVLS 84
Query: 61 RFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIY 120
++R +C L V R ++ +K Q TQ Y RPYGVGLL+ GYD +G H+
Sbjct: 85 NYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLL 144
Query: 121 QTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADF--PEASLEEIVKHGLRALRDTLPNDS 178
+ PS N ++ AIG+RSQ A+TYLE+ L F + + +E++K G+ A+ +L ++S
Sbjct: 145 EFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDES 204
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 155 bits (394), Expect = 3e-48
Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 3/192 (1%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK--KIIVIDDHMGLSFAGLTADARI 58
++AV+ G+ ++G+K V K S+L QK KI V+D H+G ++GL D R
Sbjct: 24 VKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRH 83
Query: 59 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPH 118
L R E ++K +K +P+ +G +Q T RP+GV + G D G H
Sbjct: 84 LVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAH 143
Query: 119 IYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA-SLEEIVKHGLRALRDTLPND 177
+Y PS +Y+ K A G QSA+ LEK + PE S E VK + + ++
Sbjct: 144 LYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDN 203
Query: 178 SELTTKVRYSYV 189
E ++ S+
Sbjct: 204 KEKDFELEISWC 215
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 148 bits (375), Expect = 2e-45
Identities = 52/181 (28%), Positives = 92/181 (50%), Gaps = 4/181 (2%)
Query: 1 MEAVKQGSAT-VGLKNKTHAVIIALKRAASEL--AAHQKKIIVIDDHMGLSFAGLTADAR 57
+A+ QG T V ++ K AVI+ K+ +L ++ + I +++G G+TAD+R
Sbjct: 28 FKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSR 87
Query: 58 ILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAG 116
+ R E N+KY + +PV L + + QV TQ + RP G +++ G D + G
Sbjct: 88 SQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQG 147
Query: 117 PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPN 176
P +Y+ P+ Y KA A G + + ++LEK++ + + E+ V+ + L L
Sbjct: 148 PQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSI 207
Query: 177 D 177
D
Sbjct: 208 D 208
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 147 bits (373), Expect = 5e-45
Identities = 60/182 (32%), Positives = 105/182 (57%), Gaps = 3/182 (1%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKIIVIDDHMGLSFAGLTADARI 58
EAVK+GS VG++ + V+ K++ ++L + +KI +DD++ ++FAGLTADARI
Sbjct: 22 QEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARI 81
Query: 59 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGP 117
+ R+EC +++ +D + V + + + Q TQ +RP+G+ L+ G+D P
Sbjct: 82 VINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTP 141
Query: 118 HIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPND 177
+YQT PS Y+ KA AIG ++S R +LEK D + + +K ++AL + + +
Sbjct: 142 RLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSG 201
Query: 178 SE 179
+
Sbjct: 202 GK 203
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 147 bits (371), Expect = 1e-44
Identities = 52/192 (27%), Positives = 84/192 (43%), Gaps = 5/192 (2%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASEL--AAHQKKIIVIDDHMGLSFAGLTADARI 58
M+AV+ S +G++ K V K S+L K++ +D H+G++ AGL ADAR
Sbjct: 27 MKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARS 86
Query: 59 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAG-P 117
LA R E N++ +P+ L V + T RP+G ++ Y
Sbjct: 87 LADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGA 146
Query: 118 HIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPND 177
+Y PS Y AIG Q+A+T +EK E + +IVK + +
Sbjct: 147 QLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKL--QMKEMTCRDIVKEVAKIIYIVHDEV 204
Query: 178 SELTTKVRYSYV 189
+ ++ S+V
Sbjct: 205 KDKAFELELSWV 216
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit
(non-catalytic) {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 221
Score = 142 bits (358), Expect = 5e-43
Identities = 61/183 (33%), Positives = 95/183 (51%), Gaps = 4/183 (2%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKIIVIDDHMGLSFAGLTADARI 58
EAVK+GS +G+K ++I+ K+ S L +KI +IDD++ +GL ADAR+
Sbjct: 16 REAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARV 75
Query: 59 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPH 118
L F R+ K + + + L+ V ++MQ TQ RPYGV L+ AG D GP
Sbjct: 76 LVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPR 135
Query: 119 IYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
++ P+ + KA AIGS + ++LE+ +E V G++AL+ +L
Sbjct: 136 LFDCDPAGTINEYKATAIGSGKDAVVSFLEREY--KENLPEKEAVTLGIKALKSSLEEGE 193
Query: 179 ELT 181
EL
Sbjct: 194 ELK 196
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 140 bits (355), Expect = 2e-42
Identities = 51/182 (28%), Positives = 92/182 (50%), Gaps = 5/182 (2%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADAR 57
MEA+ +G+ ++ A +R +L +KI +++ M S AG+T+DA
Sbjct: 24 MEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDAN 83
Query: 58 ILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-G 116
+L +R+ Y +++ +P +L++ + + Q TQ KRP+GV LL G+D G
Sbjct: 84 VLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYG 143
Query: 117 PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPN 176
+YQ+ PS NY KA IG+ S +A + L++ + E +L+ + ++ L T+
Sbjct: 144 FQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE-GEMTLKSALALAIKVLNKTMDV 202
Query: 177 DS 178
Sbjct: 203 SK 204
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 140 bits (353), Expect = 4e-42
Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 9/184 (4%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKIIVIDDHMGLSFAGLTADARI 58
+EA+K GS +G++ + KR S L +KI+ ID H+G + +GL ADA+
Sbjct: 21 IEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKT 80
Query: 59 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDK-----RPYGVGLLVAGYD 113
L R+E N+ + + +T+ V + V N + RP+GV LL G D
Sbjct: 81 LIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVD 140
Query: 114 DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDT 173
+ GP ++ PS + A AIGS S+ A++ L++ +L+E +K L L+
Sbjct: 141 EKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELY--HKSMTLKEAIKSSLIILKQV 198
Query: 174 LPND 177
+
Sbjct: 199 MEEK 202
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 139 bits (350), Expect = 1e-41
Identities = 49/193 (25%), Positives = 97/193 (50%), Gaps = 6/193 (3%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAA---HQKKIIVIDDHMGLSFAGLTADAR 57
+E++ +G+ V+ A ++ S L +K+ ++D + ++ AGLTADA
Sbjct: 25 LESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAE 84
Query: 58 ILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAG 116
IL R+ NY + + +PV L+ + + Q TQ RP+GV + AGYD G
Sbjct: 85 ILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYG 144
Query: 117 PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPN 176
+Y + PS NY KA+++G+ + +A+T L+ + +++ ++ L+ L T +
Sbjct: 145 YQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMD--YKDDMKVDDAIELALKTLSKTTDS 202
Query: 177 DSELTTKVRYSYV 189
+ ++ ++ +
Sbjct: 203 SALTYDRLEFATI 215
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 241
Score = 139 bits (350), Expect = 1e-41
Identities = 66/185 (35%), Positives = 100/185 (54%), Gaps = 6/185 (3%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK---KIIVIDDHMGLSFAGLTADAR 57
+EAVK+G+ VG+K K V+ +R+ +L + K+ ID H+ LSF+GL AD+R
Sbjct: 22 LEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSR 81
Query: 58 ILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD--A 115
IL R+E +++ +D + V L V Q TQ RP+GV L+AG+D
Sbjct: 82 ILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDD 141
Query: 116 GPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRL-ADFPEASLEEIVKHGLRALRDTL 174
P +YQT PS Y A IG S++ R +LEK P A++EE VK +R+L + +
Sbjct: 142 EPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVV 201
Query: 175 PNDSE 179
++
Sbjct: 202 QTGAK 206
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 137 bits (346), Expect = 6e-41
Identities = 57/180 (31%), Positives = 94/180 (52%), Gaps = 5/180 (2%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKIIVIDDHMGLSFAGLTADARI 58
EAVK+G+ +G+K K ++IA KR S+L +KI ID+H+ + +GL ADAR+
Sbjct: 25 REAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVADARV 84
Query: 59 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPH 118
L R+E + + + V L + + Q TQ RP+GV LL+AG ++ P
Sbjct: 85 LIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNE-VPK 143
Query: 119 IYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
+Y+T PS + KA AIG + + EK + S ++ + GL A+ ++ ++
Sbjct: 144 LYETDPSGALLEYKATAIGMGRMAVTEFFEKEY--RDDLSFDDAMVLGLVAMGLSIESEL 201
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 250
Score = 137 bits (345), Expect = 9e-41
Identities = 62/181 (34%), Positives = 99/181 (54%), Gaps = 6/181 (3%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKIIVIDDHMGLSFAGLTADARI 58
+ AVKQG ++G+K VI K+++S LA + K+ ++ +G ++G+ D R+
Sbjct: 25 LTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPDYRV 84
Query: 59 LARFMRMEC-LNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-G 116
L R +YK + + P L+S V MQ TQ RP+GV LL+AG+D+ G
Sbjct: 85 LVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNG 144
Query: 117 PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPN 176
+YQ PS +Y+ KA AIG S +A+T+LEKR E LE+ + L L++++
Sbjct: 145 FSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRW--NDELELEDAIHIALLTLKESVEG 202
Query: 177 D 177
+
Sbjct: 203 E 203
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 243
Score = 133 bits (335), Expect = 2e-39
Identities = 51/187 (27%), Positives = 79/187 (42%), Gaps = 9/187 (4%)
Query: 1 MEAVKQGSAT-VGLKNKTHAVIIALKRAASELAAH--QKKIIVIDDHMGLSFAGLTADAR 57
+A Q + + ++ K V+I+ K+ +L I I +G+ G DAR
Sbjct: 23 FKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPDAR 82
Query: 58 ILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAG 116
A + E ++Y + +P L + N Q+ TQR RP GV L D + G
Sbjct: 83 NAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELG 142
Query: 117 PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRL-----ADFPEASLEEIVKHGLRALR 171
P IY+T P+ Y KA A G + Q T LE E S E++V+ + +
Sbjct: 143 PSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMI 202
Query: 172 DTLPNDS 178
D L +
Sbjct: 203 DALGTEF 209
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 242
Score = 132 bits (334), Expect = 3e-39
Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 11/186 (5%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAH--QKKIIVIDDHMGLSFAGLTADARI 58
+EA+K GS +G+ K V+ KRA S L +KI+ ID H+G + +GLTADAR
Sbjct: 20 LEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARS 79
Query: 59 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ------RYDKRPYGVGLLVAGY 112
+ R + + + + + V L V + + R RP+GV LL+AG+
Sbjct: 80 MIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGH 139
Query: 113 D-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALR 171
D D G ++ PS +Y A AIGS S+ A+ L +L+E L+ L+
Sbjct: 140 DADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEW--HSSLTLKEAELLVLKILK 197
Query: 172 DTLPND 177
+
Sbjct: 198 QVMEEK 203
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 227
Score = 130 bits (329), Expect = 1e-38
Identities = 28/184 (15%), Positives = 62/184 (33%), Gaps = 12/184 (6%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILA 60
+ + +G + V L + + +A + + K+ + D +G + G + L
Sbjct: 13 RKGIARGRSVVVLTFRDGVLFVAENPSTA-----LHKVSELYDRLGFAAVGKYNEFENLR 67
Query: 61 RFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD----DAG 116
R + Y++ R ++ + +PY V + VA
Sbjct: 68 RAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKA 127
Query: 117 PHIYQTCPSSNYYDVKAMAIG-SRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLP 175
P +Y+ + D + + ++ T + + + LE V + ALR
Sbjct: 128 PQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYR--ADLDLEAAVGIAVNALRQGGA 185
Query: 176 NDSE 179
+ E
Sbjct: 186 GEGE 189
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 233
Score = 130 bits (327), Expect = 2e-38
Identities = 52/180 (28%), Positives = 93/180 (51%), Gaps = 4/180 (2%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKIIVIDDHMGLSFAGLTADARI 58
+ AV G+ +VG+K V+ K+ S L + K+ I H+GL ++G+ D R+
Sbjct: 25 LAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRV 84
Query: 59 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPH 118
L R Y +++ +P +L+ V + MQ TQ RP+GV LL+ G+++ P+
Sbjct: 85 LVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPY 144
Query: 119 IYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
++Q+ PS Y+ KA A+G + +T+LEKR + LE+ + + L+++
Sbjct: 145 LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKR--YNEDLELEDAIHTAILTLKESFEGQM 202
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 107 bits (268), Expect = 1e-29
Identities = 33/194 (17%), Positives = 66/194 (34%), Gaps = 22/194 (11%)
Query: 4 VKQGSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADARILA 60
G +G+ + AV+ R ++ + ++ K+ D++ +S G AD L
Sbjct: 6 GDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALV 65
Query: 61 RFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAGPHI 119
+ + Y + H D + +Q PY V ++AG D D +
Sbjct: 66 KRFKNSVKWYHFDHNDKKLSINSAA---RNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAV 122
Query: 120 YQTCPSSNYYDVKAMAIGSRSQSARTYLEKRL---------------ADFPEASLEEIVK 164
Y P +Y + A G+ + +L+ ++ S+EE++K
Sbjct: 123 YSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIK 182
Query: 165 HGLRALRDTLPNDS 178
+
Sbjct: 183 LVRDSFTSATERHI 196
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 101 bits (253), Expect = 2e-27
Identities = 29/188 (15%), Positives = 67/188 (35%), Gaps = 10/188 (5%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADAR 57
+ + G++ + +K +I A L +++I + D+ + +G +D +
Sbjct: 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQ 61
Query: 58 ILARFMRMECLNYKYAHKDTLPVFRLISIVGNKM---QVCTQRYDKRPYGVGLLVAGYDD 114
+ R ++ Y + L + + +R P ++VAG
Sbjct: 62 HIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQS 121
Query: 115 AGPH-IYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRL---ADFPEASLEEIVKHGLRAL 170
G + Y +A G + A L K + +D P+ +++ + + A+
Sbjct: 122 NGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAM 181
Query: 171 RDTLPNDS 178
R D+
Sbjct: 182 RVLYYRDA 189
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 217
Score = 100 bits (249), Expect = 6e-27
Identities = 32/181 (17%), Positives = 69/181 (38%), Gaps = 6/181 (3%)
Query: 2 EAVKQGSATVGLKNKTHAVIIALKRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADARI 58
+ G++ +G+K + VI A LA + +I+ +++ L +G AD +
Sbjct: 3 NPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQY 62
Query: 59 LARFMRMECLNYKYA-HKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGP 117
L + + ++ + + + S + + ++R P +++ GY D
Sbjct: 63 LKQVLGQMVIDEELLGDGHSYSPRAIHSWLTR--AMYSRRSKMNPLWNTMVIGGYADGES 120
Query: 118 HIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPND 177
+ Y+ ++A G + A+ L + L P S E R +R D
Sbjct: 121 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRD 180
Query: 178 S 178
+
Sbjct: 181 A 181
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 93.3 bits (231), Expect = 3e-24
Identities = 34/172 (19%), Positives = 61/172 (35%), Gaps = 10/172 (5%)
Query: 10 TVGLKNKTHAVIIALKRAASELAAHQK---KIIVIDDHMGLSFAGLTADARILARFMRME 66
VG+K VI A R+ K K+ I + + AG AD + + +
Sbjct: 3 IVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSN 62
Query: 67 CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSS 126
+ V + ++ + L+VAG D G H++
Sbjct: 63 IELHSLYTSREPRVVSALQMLKQHLFKYQGHIGA-----YLIVAGVDPTGSHLFSIHAHG 117
Query: 127 NYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
+ +++GS S +A LE + + EE +K A++ + ND
Sbjct: 118 STDVGYYLSLGSGSLAAMAVLESHW--KQDLTKEEAIKLASDAIQAGIWNDL 167
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 201
Score = 91.7 bits (227), Expect = 8e-24
Identities = 33/172 (19%), Positives = 68/172 (39%), Gaps = 9/172 (5%)
Query: 10 TVGLKNKTHAVIIALKRAASELAAHQK---KIIVIDDHMGLSFAGLTADARILARFMRME 66
T+ K + ++ A RA + + K+I I+ ++ + AG AD R + +
Sbjct: 3 TLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQ 62
Query: 67 CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSS 126
C Y+ +K+ + V ++ N + +G ++ G+D GP +Y
Sbjct: 63 CRIYELRNKERISVAAASKLLANMVYQYKG----MGLSMGTMICGWDKRGPGLYYVDSEG 118
Query: 127 NYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
N ++GS S A +++ + +E+ RA+ D+
Sbjct: 119 NRISGATFSVGSGSVYAYGVMDRGY--SYDLEVEQAYDLARRAIYQATYRDA 168
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 202
Score = 90.6 bits (224), Expect = 2e-23
Identities = 53/173 (30%), Positives = 77/173 (44%), Gaps = 10/173 (5%)
Query: 10 TVGLKNKTHAVIIALKRAASE---LAAHQKKIIVIDDHMGLSFAGLTADARILARFMRME 66
TVGL K V+ KRA + KKI I D M ++ AG DA+ LAR +++E
Sbjct: 3 TVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIE 62
Query: 67 CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSS 126
Y+ + V + ++ N + Y V LL+ G D G IY P
Sbjct: 63 ANLYEIRRERKPTVRAIATLTSNLLNSYRYFP----YLVQLLIGGIDSEGKSIYSIDPIG 118
Query: 127 NYYDVK-AMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
+ K +A GS S +A LE R PE ++E V+ +RA+ + DS
Sbjct: 119 GAIEEKDIVATGSGSLTAYGVLEDR--FTPEIGVDEAVELAVRAIYSAMKRDS 169
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 198
Score = 88.7 bits (219), Expect = 1e-22
Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 9/174 (5%)
Query: 10 TVGLKNKTHAVIIALKRAAS---ELAAHQKKIIVIDDHMGLSFAGLTADARILARFMRME 66
+G++ + ++ + K L K + H +SFAG D A +++
Sbjct: 4 ILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQAN 63
Query: 67 CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA--GPHIYQTCP 124
Y L + S V + ++ +RPY V +L+ GYD P +YQ
Sbjct: 64 IQLYSIREDYELSPQAVSSFV--RQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDY 121
Query: 125 SSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
++ A G + L+ P+ + EE + +++
Sbjct: 122 LGTKVELPYGAHGYSGFYTFSLLDHH--YRPDMTTEEGLDLLKLCVQELEKRMP 173
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 203
Score = 86.8 bits (214), Expect = 7e-22
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 10/172 (5%)
Query: 10 TVGLKNKTHAVIIALKRAASE---LAAHQKKIIVIDDHMGLSFAGLTADARILARFMRME 66
TVG+ K ++ +R E + + KK+ ID + G++ AGL DA++L R+M+ E
Sbjct: 3 TVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAE 62
Query: 67 CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSS 126
Y+ + +P+ + +++ N + PY V LLV G D PH++ +
Sbjct: 63 LELYRLQRRVNMPIEAVATLLSNMLNQVKY----MPYMVQLLVGGIDT-APHVFSIDAAG 117
Query: 127 NYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
+ + GS S LE + + +++E V +RA+ DS
Sbjct: 118 GSVEDIYASTGSGSPFVYGVLESQ--YSEKMTVDEGVDLVIRAISAAKQRDS 167
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 220
Score = 85.6 bits (211), Expect = 3e-21
Identities = 35/172 (20%), Positives = 61/172 (35%), Gaps = 10/172 (5%)
Query: 10 TVGLKNKTHAVIIALKRAASELAAHQK---KIIVIDDHMGLSFAGLTADARILARFMRME 66
G+ K V+ A RA + K KI I ++ AG AD + + +
Sbjct: 3 IAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSN 62
Query: 67 CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSS 126
+ + V ++ + + G L++ G D GPH+Y P
Sbjct: 63 LELHSLSTGRLPRVVTANRMLKQMLFRY-----RGYIGAALVLGGVDVTGPHLYSIYPHG 117
Query: 127 NYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
+ + + +GS S +A E + P+ EE A+ + ND
Sbjct: 118 STDKLPYVTMGSGSLAAMAVFEDKF--RPDMEEEEAKNLVSEAIAAGIFNDL 167
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 204
Score = 84.9 bits (209), Expect = 4e-21
Identities = 26/178 (14%), Positives = 58/178 (32%), Gaps = 12/178 (6%)
Query: 7 GSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADARILARFM 63
G A + +K K I A +R + +KI + D + + AGL D + +A+ +
Sbjct: 7 GGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRL 66
Query: 64 RMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGP--HIYQ 121
+ Y+ + + + + PY ++AG D I
Sbjct: 67 KFRLNLYELKEGRQIKP----YTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICS 122
Query: 122 TCPSSNYYDVKAMAIG-SRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
+ + ++ E P + + + +A+ + + D+
Sbjct: 123 LDLIGCPMVTDDFVVSGTCAEQMYGMCESL--WEPNMDPDHLFETISQAMLNAVDRDA 178
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 205
Score = 84.8 bits (209), Expect = 4e-21
Identities = 32/179 (17%), Positives = 61/179 (34%), Gaps = 12/179 (6%)
Query: 4 VKQGSATVGLKNKTHAVIIALKRAASELAAHQK---KIIVIDDHMGLSFAGLTADARILA 60
V G++ + + K ++ A R + + K+ + D + +G AD + +A
Sbjct: 6 VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIA 65
Query: 61 RFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-GPHI 119
++ Y + + + +K G++VAGYDD +
Sbjct: 66 DIVQYHLELYTSQYG------TPSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEV 119
Query: 120 YQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
Y + + + GS S Y +K S EE V +L + D
Sbjct: 120 YTIPLGGSVHKLPYAIAGSGSTFIYGYCDKN--FRENMSKEETVDFIKHSLSQAIKWDG 176
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 204
Score = 84.5 bits (208), Expect = 5e-21
Identities = 34/177 (19%), Positives = 52/177 (29%), Gaps = 11/177 (6%)
Query: 7 GSATVGLKNKTHAVIIALKRAASELAAHQK--KIIVIDDHMGLSFAGLTADARILARFMR 64
G V + K I R S+ + I H+ L GL D L R
Sbjct: 8 GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVFLGITGLATDVTTLNEMFR 67
Query: 65 MECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAG--PHIYQT 122
+ YK + + + PY VG +VAG + P I
Sbjct: 68 YKTNLYKLKEERAIEPETFT----QLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGF 123
Query: 123 CPSSNYYDVKAM-AIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
+ K G+ S E P E++ + +AL + D+
Sbjct: 124 DLIGCIDEAKDFIVSGTASDQLFGMCESLY--EPNLEPEDLFETISQALLNAADRDA 178
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 213
Score = 81.5 bits (200), Expect = 8e-20
Identities = 25/183 (13%), Positives = 55/183 (30%), Gaps = 15/183 (8%)
Query: 7 GSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADARILARFM 63
G + + + A++ + R + K + D + +G D L + +
Sbjct: 9 GGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKII 68
Query: 64 RMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTC 123
YK+++ + + + PY V ++ G D+ G +
Sbjct: 69 EARLKMYKHSNNKAMTTGAIA----AMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSF 124
Query: 124 P-SSNYYDVKAMAIGSRSQSARTYLEKR-------LADFPEASLEEIVKHGLRALRDTLP 175
+Y A GS S + L+ + + SL+ ++
Sbjct: 125 DPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAE 184
Query: 176 NDS 178
D
Sbjct: 185 RDV 187
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 80.6 bits (198), Expect = 2e-19
Identities = 31/173 (17%), Positives = 66/173 (38%), Gaps = 10/173 (5%)
Query: 10 TVGLKNKTHAVIIALKRAASELAAHQK---KIIVIDDHMGLSFAGLTADARILARFMRME 66
T+ + + ++ RA + + ++I I+ + + AG AD + ++ +
Sbjct: 3 TLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQ 62
Query: 67 CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGY-DDAGPHIYQTCPS 125
C ++ K+ + V I+ N + +Y +G ++ GY GP IY
Sbjct: 63 CRLHELREKERISVAAASKILSNLV----YQYKGAGLSMGTMICGYTRKEGPTIYYVDSD 118
Query: 126 SNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
+GS A L+ + S+E+ + G R++ D+
Sbjct: 119 GTRLKGDIFCVGSGQTFAYGVLDSNY--KWDLSVEDALYLGKRSILAAAHRDA 169
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 202
Score = 80.2 bits (197), Expect = 2e-19
Identities = 27/173 (15%), Positives = 55/173 (31%), Gaps = 11/173 (6%)
Query: 10 TVGLKNKTHAVIIALKRAASELAAHQK---KIIVIDDHMGLSFAGLTADARILARFMRME 66
+ ++ V+ A R + + K+ I D + +G AD + +A + +
Sbjct: 3 IMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQ 62
Query: 67 CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-GPHIYQTCPS 125
+ + V S+ + G+++AG+D G +Y
Sbjct: 63 LGFHSIELNEPPLVHTAASLFKEMCY-----RYREDLMAGIIIAGWDPQEGGQVYSVPMG 117
Query: 126 SNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
GS S Y++ + EE ++ AL + D
Sbjct: 118 GMMVRQSFAIGGSGSSYIYGYVDATY--REGMTKEECLQFTANALALAMERDG 168
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 199
Score = 78.0 bits (191), Expect = 1e-18
Identities = 32/172 (18%), Positives = 63/172 (36%), Gaps = 8/172 (4%)
Query: 11 VGLKNKTHAVIIALKRAASELAAH---QKKIIVIDDHMGLSFAGLTADARILARFMRMEC 67
+G++ + ++ + + AAS + K+ + + + L G D A +++
Sbjct: 5 IGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNV 64
Query: 68 LNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAGPHIYQTCPSS 126
YK + L + + + + PY V LL+AGYD GP +Y +
Sbjct: 65 QLYKMRNGYELSPTAAANFT--RRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLA 122
Query: 127 NYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
A G + + L++ P S E V+ + L +
Sbjct: 123 ALAKAPFAAHGYGAFLTLSILDRYY--TPTISRERAVELLRKCLEELQKRFI 172
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 224
Score = 75.7 bits (185), Expect = 1e-17
Identities = 35/180 (19%), Positives = 63/180 (35%), Gaps = 14/180 (7%)
Query: 10 TVGLKNKTHAVIIALKRAASELAAHQK---KIIVIDDHMGLSFAGLTADARILARFMRME 66
V L K ++ +RA + K+ V D++ AG A L R +E
Sbjct: 3 IVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVE 62
Query: 67 CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA------GPHIY 120
+Y+ L + + + ++ + V L+ GYD I
Sbjct: 63 LEHYEKIEGVPLTFDGKANRLASMVR-GNLGAAMQGLAVVPLLVGYDLDADDESRAGRIV 121
Query: 121 QTCPSSNY--YDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
A+GS S A++ L+K P++ E ++ + +L D +DS
Sbjct: 122 SYDVVGGRYEERAGYHAVGSGSLFAKSALKKI--YSPDSDEETALRAAIESLYDAADDDS 179
>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima
[TaxId: 2336]}
Length = 171
Score = 49.3 bits (117), Expect = 3e-08
Identities = 22/163 (13%), Positives = 44/163 (26%), Gaps = 14/163 (8%)
Query: 10 TVGLKNKTHAVIIALKRAASE---LAAHQKKIIVIDDHMGLSFAGLTADARILARFMRME 66
+ ++ V+ + L + +K+ + + L+ + +
Sbjct: 3 ILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEA 62
Query: 67 CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSS 126
L + V +++ + L+ D I
Sbjct: 63 KLREWGGNLTKAAVELAKDWRTDRV----------LRRLEALLLVADKENIFIISGNGEV 112
Query: 127 NYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRA 169
D A AIGS A K L + S EIV+ +
Sbjct: 113 IQPDDDAAAIGSGGPYALA-AAKALLRNTDLSAREIVEKAMTI 154
>d1ixsa_ a.5.1.1 (A:) DNA helicase RuvA subunit, C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 50
Score = 31.1 bits (70), Expect = 0.011
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 134 MAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALR 171
A+G + AR + LA P+A ++++K L+ LR
Sbjct: 13 AALGFKEAQARAVVLDLLAQNPKARAQDLIKEALKRLR 50
>d1thqa_ f.4.1.2 (A:) Outer membrane enzyme PagP {Escherichia coli
[TaxId: 562]}
Length = 157
Score = 27.5 bits (61), Expect = 0.81
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 10/41 (24%)
Query: 95 TQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMA 135
T RY++RP+G G ++ +D+ G N++ + AMA
Sbjct: 37 TDRYNERPWGGGFGLSRWDEKG----------NWHGLYAMA 67
>d2dira1 d.308.1.3 (A:8-92) THUMP domain-containing protein 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 25.5 bits (56), Expect = 1.7
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 156 EASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSIHST 197
+A LE++ K+ L ++ T ++ Y ++
Sbjct: 1 KAFLEDMKKYAETFLEPWFKAPNKGTFQIVYKSRNNSHVNRE 42
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 26.5 bits (57), Expect = 1.7
Identities = 19/142 (13%), Positives = 38/142 (26%), Gaps = 8/142 (5%)
Query: 34 HQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQV 93
H I V+ MG+S +G +A A +A + L+ + H N
Sbjct: 4 HDHHIYVL---MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDR 60
Query: 94 CTQRYDKRPYGVGLL-----VAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLE 148
+ A Y+ ++ + + + L+
Sbjct: 61 KPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLK 120
Query: 149 KRLADFPEASLEEIVKHGLRAL 170
R F + + L+
Sbjct: 121 ARKGHFFKTQMLVTQFETLQEP 142
>d1vi9a_ c.72.1.5 (A:) Pyridoxamine kinase {Escherichia coli
[TaxId: 562]}
Length = 288
Score = 25.5 bits (55), Expect = 5.6
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 36 KKIIVIDDHMGLSFAGLTADARILARF 62
K I+ I H+ AG +A + R
Sbjct: 3 KNILAIQSHVVYGHAGNSAAEFPMRRL 29
>d1nula_ c.61.1.1 (A:) Xanthine-guanine PRTase (XPRTase)
{Escherichia coli [TaxId: 562]}
Length = 150
Score = 24.6 bits (53), Expect = 6.9
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 5/81 (6%)
Query: 24 LKRAASELAA-----HQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL 78
L+ A +LA+ Q K I+ GL L A + + +Y + ++ L
Sbjct: 10 LQIHARKLASRLMPSEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQREL 69
Query: 79 PVFRLISIVGNKMQVCTQRYD 99
V + G V D
Sbjct: 70 KVLKRAEGDGEGFIVIDDLVD 90
>d1cuka1 a.5.1.1 (A:156-203) DNA helicase RuvA subunit, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 48
Score = 22.7 bits (49), Expect = 9.1
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 155 PEASLEEIVKHGLRAL 170
P+AS E +++ LRA
Sbjct: 32 PDASSETLIREALRAA 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.133 0.379
Gapped
Lambda K H
0.267 0.0652 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 746,015
Number of extensions: 33571
Number of successful extensions: 205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 46
Length of query: 208
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 127
Effective length of database: 1,295,466
Effective search space: 164524182
Effective search space used: 164524182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)