BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16848
(514 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BWO|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWO|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWO|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWP|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
Length = 401
Score = 276 bits (706), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 126/269 (46%), Positives = 179/269 (66%)
Query: 210 IISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269
+ G ++ + HASMI+GI+ ++ PK I+RHNDV HL +++ D PKL+AFE+V+
Sbjct: 129 LFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVY 188
Query: 270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK 329
SM G P+KE+C+++ + GALT++DEVHAVG+YG GAG+ ERDG +H +DI +GTL K
Sbjct: 189 SMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAK 248
Query: 330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ 389
A+G GGYI + +D +RSYA GFIF+TSLPP + AGA+ +I L + EG +LR Q
Sbjct: 249 AYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQ 308
Query: 390 DIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV 449
L+ L +G P+ SHI+P+ IG+P + DMLL + G YVQPIN+PTVP
Sbjct: 309 MHAKVLKMRLKALGMPIIDHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPR 368
Query: 450 GEEKIRLAPTPFHTREMIDKFVTDLLAVW 478
G E++R P+P H + ID V + +W
Sbjct: 369 GTERLRFTPSPVHDLKQIDGLVHAMDLLW 397
Score = 223 bits (569), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/207 (52%), Positives = 146/207 (70%), Gaps = 7/207 (3%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
EALE G G+GGTRNISG + +H +LE ++A LHQKEA LVF+S Y AND+TL TL +
Sbjct: 71 EALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLF 130
Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159
PGL SD+ NHASMI+GI+ ++ PK I+RHNDV HL +++ D PKL+AFE+V+SM
Sbjct: 131 PGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSM 190
Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP- 218
G P+KE+C+++ + GALT++DEVHAVG+YG GAG+ ERDG +H +DI +GTL
Sbjct: 191 DGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAY 250
Query: 219 -----EVAIHASMIQGIRNSSAPKIIY 240
+A A M+ +R S AP I+
Sbjct: 251 GVFGGYIAASARMVDAVR-SYAPGFIF 276
>pdb|2BWN|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWO|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
Length = 401
Score = 274 bits (701), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 125/269 (46%), Positives = 178/269 (66%)
Query: 210 IISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269
+ G ++ + HASMI+GI+ ++ PK I+RHNDV HL +++ D PKL+AFE+V+
Sbjct: 129 LFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVY 188
Query: 270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK 329
SM G P+KE+C+++ + GALT++DEVHAVG+YG GAG+ ERDG +H +DI +GTL
Sbjct: 189 SMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAX 248
Query: 330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ 389
A+G GGYI + +D +RSYA GFIF+TSLPP + AGA+ +I L + EG +LR Q
Sbjct: 249 AYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQ 308
Query: 390 DIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV 449
L+ L +G P+ SHI+P+ IG+P + DMLL + G YVQPIN+PTVP
Sbjct: 309 MHAKVLKMRLKALGMPIIDHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPR 368
Query: 450 GEEKIRLAPTPFHTREMIDKFVTDLLAVW 478
G E++R P+P H + ID V + +W
Sbjct: 369 GTERLRFTPSPVHDLKQIDGLVHAMDLLW 397
Score = 223 bits (568), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/207 (52%), Positives = 146/207 (70%), Gaps = 7/207 (3%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
EALE G G+GGTRNISG + +H +LE ++A LHQKEA LVF+S Y AND+TL TL +
Sbjct: 71 EALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLF 130
Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159
PGL SD+ NHASMI+GI+ ++ PK I+RHNDV HL +++ D PKL+AFE+V+SM
Sbjct: 131 PGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSM 190
Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP- 218
G P+KE+C+++ + GALT++DEVHAVG+YG GAG+ ERDG +H +DI +GTL
Sbjct: 191 DGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAXAY 250
Query: 219 -----EVAIHASMIQGIRNSSAPKIIY 240
+A A M+ +R S AP I+
Sbjct: 251 GVFGGYIAASARMVDAVR-SYAPGFIF 276
>pdb|3TQX|A Chain A, Structure Of The 2-Amino-3-Ketobutyrate Coenzyme A Ligase
(Kbl) From Coxiella Burnetii
pdb|3TQX|B Chain B, Structure Of The 2-Amino-3-Ketobutyrate Coenzyme A Ligase
(Kbl) From Coxiella Burnetii
Length = 399
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 154/277 (55%), Gaps = 11/277 (3%)
Query: 214 TLVNPEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP--KLVAF 265
TL+ PE AI HAS+I GIR A + Y++N L L+ D K KL+A
Sbjct: 122 TLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKNNAXGDLEAKLKEADEKGARFKLIAT 181
Query: 266 ETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG 325
+ V S G I LK +C+++ ++ AL VD+ HAVG GE+G G E G +DI++G
Sbjct: 182 DGVFSXDGIIADLKSICDLADKYNALVXVDDSHAVGFIGENGRGTPEYCGVADRVDILTG 241
Query: 326 TLGKAFGNI-GGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVEL 384
TLGKA G GGY G K I+ +R+ + ++F+ ++ P ++A + + + +L + EG +L
Sbjct: 242 TLGKALGGASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKT-EGPQL 300
Query: 385 RAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINY 444
R + Q+ Y R ++GF + IIP+ +G+ L T D LL+E G YV +Y
Sbjct: 301 RKQLQENSRYFRAGXEKLGFQLVPGNHPIIPVXLGDAQLATNXADHLLQE-GIYVVGFSY 359
Query: 445 PTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481
P VP G+ +IR+ + HT++ +D+ + V K L
Sbjct: 360 PVVPXGKARIRVQXSAVHTQQQLDRAIEAFGQVGKKL 396
Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 109/207 (52%), Gaps = 11/207 (5%)
Query: 42 LEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPG 101
+E++G G R I G H++LE+D+++ + ++++SC+ AN TL + P
Sbjct: 70 VEQYGFGXASVRFICGTQTIHKELEKDISEFLGTDDTILYSSCFDANGGLFETL--LGPE 127
Query: 102 LHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP--KLVAFETVHSM 159
ISD NHAS+I GIR A + Y++N L L+ D K KL+A + V S
Sbjct: 128 DAIISDELNHASIIDGIRLCKAQRYRYKNNAXGDLEAKLKEADEKGARFKLIATDGVFSX 187
Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP- 218
G I LK +C+++ ++ AL VD+ HAVG GE+G G E G +DI++GTL
Sbjct: 188 DGIIADLKSICDLADKYNALVXVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKAL 247
Query: 219 ------EVAIHASMIQGIRNSSAPKII 239
+ H +I+ +RN S P +
Sbjct: 248 GGASGGYTSGHKEIIEWLRNRSRPYLF 274
>pdb|1FC4|A Chain A, 2-Amino-3-Ketobutyrate Coa Ligase
pdb|1FC4|B Chain B, 2-Amino-3-Ketobutyrate Coa Ligase
Length = 401
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 137/278 (49%), Gaps = 14/278 (5%)
Query: 214 TLVNPEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPK--LVAF 265
TL+ E AI HAS+I G+R A + Y +ND L L+ + L+A
Sbjct: 124 TLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDXQELEARLKEAREAGARHVLIAT 183
Query: 266 ETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG 325
+ V S G I LK +C+++ ++ AL VD+ HAVG GE+G G E +DII+G
Sbjct: 184 DGVFSXDGVIANLKGVCDLADKYDALVXVDDSHAVGFVGENGRGSHEYCDVXGRVDIITG 243
Query: 326 TLGKAFGNI-GGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQE-GVE 383
TLGKA G GGY K ++ +R + ++F+ SL P ++A +I++L E G E
Sbjct: 244 TLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAA---SIKVLEXVEAGSE 300
Query: 384 LRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPIN 443
LR + R + GF + IIP+ +G+ + K L KE G YV
Sbjct: 301 LRDRLWANARQFREQXSAAGFTLAGADHAIIPVXLGDAVVAQKFARELQKE-GIYVTGFF 359
Query: 444 YPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481
YP VP G+ +IR + HT E I + V + K L
Sbjct: 360 YPVVPKGQARIRTQXSAAHTPEQITRAVEAFTRIGKQL 397
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 98/203 (48%), Gaps = 11/203 (5%)
Query: 46 GTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYI 105
G G R I G H++LE+ +A E ++++SC+ AN TL + I
Sbjct: 76 GFGXASVRFICGTQDSHKELEQKLAAFLGXEDAILYSSCFDANGGLFETLLGAEDAI--I 133
Query: 106 SDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPK--LVAFETVHSMTGAI 163
SDA NHAS+I G+R A + Y +ND L L+ + L+A + V S G I
Sbjct: 134 SDALNHASIIDGVRLCKAKRYRYANNDXQELEARLKEAREAGARHVLIATDGVFSXDGVI 193
Query: 164 CPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP----- 218
LK +C+++ ++ AL VD+ HAVG GE+G G E +DII+GTL
Sbjct: 194 ANLKGVCDLADKYDALVXVDDSHAVGFVGENGRGSHEYCDVXGRVDIITGTLGKALGGAS 253
Query: 219 --EVAIHASMIQGIRNSSAPKII 239
A +++ +R S P +
Sbjct: 254 GGYTAARKEVVEWLRQRSRPYLF 276
>pdb|3A2B|A Chain A, Crystal Structure Of Serine Palmitoyltransferase From
Sphingobacterium Multivorum With Substrate L-Serine
Length = 398
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 136/258 (52%), Gaps = 5/258 (1%)
Query: 223 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 282
HAS+I G R S + I Y HN++ L L + KL+ + + SM G I L EL
Sbjct: 137 HASIIDGSRLSFSKVIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELT 196
Query: 283 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTK 342
++++ A VD+ H++G+ G GAG G ++D+I GT K+ ++GG++ G
Sbjct: 197 SIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLGGFVAGDA 256
Query: 343 NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQ-EGVELRAKHQDIVAYLRNELIQ 401
+ ID ++ A +F+ S+ P +A +A+ I+ ++ E +E K+ D Y + +L+
Sbjct: 257 DVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTD---YAKAQLLD 313
Query: 402 IGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF 461
GF + T S I+PI I + + M L++ G +V P+ P VP E IR +
Sbjct: 314 HGFDLGATESPILPIFIRSNEKTFWVTKM-LQDDGVFVNPVVSPAVPAEESLIRFSLMAT 372
Query: 462 HTREMIDKFVTDLLAVWK 479
HT + ID+ + ++ V+K
Sbjct: 373 HTYDQIDEAIEKMVKVFK 390
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 96/180 (53%), Gaps = 2/180 (1%)
Query: 36 KCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL 95
K +ALEK+GTG G+R ++G H +LEE ++ KEA ++F++ + +N L L
Sbjct: 64 KAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPLSCL 123
Query: 96 GKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFET 155
M + + D +HAS+I G R S + I Y HN++ L L + KL+ +
Sbjct: 124 --MGRNDYILLDERDHASIIDGSRLSFSKVIKYGHNNMEDLRAKLSRLPEDSAKLICTDG 181
Query: 156 VHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215
+ SM G I L EL ++++ A VD+ H++G+ G GAG G ++D+I GT
Sbjct: 182 IFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTF 241
>pdb|2W8W|A Chain A, N100y Spt With Plp-Ser
Length = 427
Score = 132 bits (331), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 138/285 (48%), Gaps = 11/285 (3%)
Query: 190 LYGEHGAGIGERDGQLHNMDIIS-----GTLVNPEVAIHASMIQGIRNSSAPKIIYRHND 244
YG GA I G + N+ IIS G V + HAS+ G + +A + +RHN
Sbjct: 121 FYGTTGA-IVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNS 179
Query: 245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG 304
V L + L + + KLV E V+SM G I PLKE+ V+ +HGA+ VDE H++G +G
Sbjct: 180 VEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFG 239
Query: 305 EHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPT 364
+G G+ E G +D + GT K+ G +GG++V + +R +IFT SLPP+
Sbjct: 240 PNGRGVYEAQGLEGQIDFVVGTFSKSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPS 299
Query: 365 VLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPV--EHTPSHIIPIKIGNPA 422
V+A A +IR L + E R + L L +GF + E S I+ + + +
Sbjct: 300 VVATATTSIRKLMTAH--EKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQE 357
Query: 423 LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI 467
+ LL + G YV P P G +R + HT I
Sbjct: 358 QAAMMWQALL-DGGLYVNMARPPATPAGTFLLRCSICAEHTPAQI 401
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 103/177 (58%), Gaps = 4/177 (2%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL-GKM 98
EALEKFG+G G+R ++G H ++E+ + + +VF++ Y+AN + TL GK
Sbjct: 89 EALEKFGSGTYGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGK- 147
Query: 99 IPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHS 158
G + I DA +HAS+ G + +A + +RHN V L + L + + KLV E V+S
Sbjct: 148 --GEYVILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYS 205
Query: 159 MTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215
M G I PLKE+ V+ +HGA+ VDE H++G +G +G G+ E G +D + GT
Sbjct: 206 MLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTF 262
>pdb|2JGT|A Chain A, Low Resolution Structure Of Spt
pdb|2JGT|B Chain B, Low Resolution Structure Of Spt
Length = 422
Score = 132 bits (331), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 138/285 (48%), Gaps = 11/285 (3%)
Query: 190 LYGEHGAGIGERDGQLHNMDIIS-----GTLVNPEVAIHASMIQGIRNSSAPKIIYRHND 244
YG GA I G + N+ IIS G V + HAS+ G + +A + +RHN
Sbjct: 122 FYGTTGA-IVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNS 180
Query: 245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG 304
V L + L + + KLV E V+SM G I PLKE+ V+ +HGA+ VDE H++G +G
Sbjct: 181 VEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFG 240
Query: 305 EHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPT 364
+G G+ E G +D + GT K+ G +GG++V + +R +IFT SLPP+
Sbjct: 241 PNGRGVYEAQGLEGQIDFVVGTFSKSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPS 300
Query: 365 VLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPV--EHTPSHIIPIKIGNPA 422
V+A A +IR L + E R + L L +GF + E S I+ + + +
Sbjct: 301 VVATATTSIRKLMTAH--EKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQE 358
Query: 423 LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI 467
+ LL + G YV P P G +R + HT I
Sbjct: 359 QAAMMWQALL-DGGLYVNMARPPATPAGTFLLRCSICAEHTPAQI 402
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 103/177 (58%), Gaps = 4/177 (2%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL-GKM 98
EALEKFG+G G+R ++G H ++E+ + + +VF++ Y+AN + TL GK
Sbjct: 90 EALEKFGSGTNGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGK- 148
Query: 99 IPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHS 158
G + I DA +HAS+ G + +A + +RHN V L + L + + KLV E V+S
Sbjct: 149 --GEYVILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYS 206
Query: 159 MTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215
M G I PLKE+ V+ +HGA+ VDE H++G +G +G G+ E G +D + GT
Sbjct: 207 MLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTF 263
>pdb|2W8J|A Chain A, Spt With Plp-Ser
pdb|2XBN|A Chain A, Inhibition Of The Plp-Dependent Enzyme Serine
Palmitoyltransferase By Cycloserine: Evidence For A
Novel Decarboxylative Mechanism Of Inactivation
Length = 427
Score = 132 bits (331), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 138/285 (48%), Gaps = 11/285 (3%)
Query: 190 LYGEHGAGIGERDGQLHNMDIIS-----GTLVNPEVAIHASMIQGIRNSSAPKIIYRHND 244
YG GA I G + N+ IIS G V + HAS+ G + +A + +RHN
Sbjct: 121 FYGTTGA-IVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNS 179
Query: 245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG 304
V L + L + + KLV E V+SM G I PLKE+ V+ +HGA+ VDE H++G +G
Sbjct: 180 VEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFG 239
Query: 305 EHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPT 364
+G G+ E G +D + GT K+ G +GG++V + +R +IFT SLPP+
Sbjct: 240 PNGRGVYEAQGLEGQIDFVVGTFSKSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPS 299
Query: 365 VLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPV--EHTPSHIIPIKIGNPA 422
V+A A +IR L + E R + L L +GF + E S I+ + + +
Sbjct: 300 VVATATTSIRKLMTAH--EKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQE 357
Query: 423 LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI 467
+ LL + G YV P P G +R + HT I
Sbjct: 358 QAAMMWQALL-DGGLYVNMARPPATPAGTFLLRCSICAEHTPAQI 401
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 103/177 (58%), Gaps = 4/177 (2%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL-GKM 98
EALEKFG+G G+R ++G H ++E+ + + +VF++ Y+AN + TL GK
Sbjct: 89 EALEKFGSGTNGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGK- 147
Query: 99 IPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHS 158
G + I DA +HAS+ G + +A + +RHN V L + L + + KLV E V+S
Sbjct: 148 --GEYVILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYS 205
Query: 159 MTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215
M G I PLKE+ V+ +HGA+ VDE H++G +G +G G+ E G +D + GT
Sbjct: 206 MLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTF 262
>pdb|2X8U|A Chain A, Sphingomonas Wittichii Serine Palmitoyltransferase
pdb|2X8U|B Chain B, Sphingomonas Wittichii Serine Palmitoyltransferase
Length = 412
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 126/251 (50%), Gaps = 5/251 (1%)
Query: 223 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 282
HAS+ G A + +RHN V L + L + + KLV E V+SM G I PL+E+
Sbjct: 138 HASIYDGCWLGDAEIVRFRHNSVEDLDKRLGRLPAEAGKLVVLEGVYSMMGDIAPLQEMV 197
Query: 283 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTK 342
VS +HGA+ VDE H +G +GEHG G+ E G ++D + GT + G +GG+ V
Sbjct: 198 AVSKKHGAMILVDEAHGMGFFGEHGRGVFEEAGVEADVDFVVGTFSXSVGTVGGFCVSNH 257
Query: 343 NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRIL--SSQEGVELRAKHQDIVAYLRNELI 400
+ +R ++FT SLPP+V+A A +IR L + + L + + LR+
Sbjct: 258 PKFEVLRLVCRPYVFTASLPPSVVATAATSIRKLMHAGDKRAHLWKNSRRLHQGLRDMGY 317
Query: 401 QIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTP 460
++G E S II + + + A + LL E G YV P P G +R +
Sbjct: 318 KLG--TETAQSAIIAVILTDMAQAVALWQGLL-EAGLYVNTARPPATPAGMFLLRCSLCA 374
Query: 461 FHTREMIDKFV 471
H+ E +++ +
Sbjct: 375 EHSDEQVEQIL 385
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 100/176 (56%), Gaps = 2/176 (1%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
+AL++FG+G G+R ++G H+ E+ + + + E +VF++ Y AN + TL
Sbjct: 69 QALDEFGSGTTGSRVLNGTYQGHKACEDALKEFYGTEHAIVFSTGYQANLGMISTLAG-- 126
Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159
G + I DA +HAS+ G A + +RHN V L + L + + KLV E V+SM
Sbjct: 127 KGDYIILDADSHASIYDGCWLGDAEIVRFRHNSVEDLDKRLGRLPAEAGKLVVLEGVYSM 186
Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215
G I PL+E+ VS +HGA+ VDE H +G +GEHG G+ E G ++D + GT
Sbjct: 187 MGDIAPLQEMVAVSKKHGAMILVDEAHGMGFFGEHGRGVFEEAGVEADVDFVVGTF 242
>pdb|2W8V|A Chain A, Spt With Plp, N100w
Length = 427
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 137/285 (48%), Gaps = 11/285 (3%)
Query: 190 LYGEHGAGIGERDGQLHNMDIIS-----GTLVNPEVAIHASMIQGIRNSSAPKIIYRHND 244
YG GA I G + N+ IIS G V + HAS+ G + +A + +RHN
Sbjct: 121 FYGTTGA-IVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNS 179
Query: 245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG 304
V L + L + + KLV E V+SM G I PLKE+ V+ +HGA+ VDE H++G +G
Sbjct: 180 VEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFG 239
Query: 305 EHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPT 364
+G G+ E G +D + GT + G +GG++V + +R +IFT SLPP+
Sbjct: 240 PNGRGVYEAQGLEGQIDFVVGTFSXSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPS 299
Query: 365 VLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPV--EHTPSHIIPIKIGNPA 422
V+A A +IR L + E R + L L +GF + E S I+ + + +
Sbjct: 300 VVATATTSIRKLMTAH--EKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQE 357
Query: 423 LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI 467
+ LL + G YV P P G +R + HT I
Sbjct: 358 QAAMMWQALL-DGGLYVNMARPPATPAGTFLLRCSICAEHTPAQI 401
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 103/177 (58%), Gaps = 4/177 (2%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL-GKM 98
EALEKFG+G G+R ++G H ++E+ + + +VF++ Y+AN + TL GK
Sbjct: 89 EALEKFGSGTWGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGK- 147
Query: 99 IPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHS 158
G + I DA +HAS+ G + +A + +RHN V L + L + + KLV E V+S
Sbjct: 148 --GEYVILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYS 205
Query: 159 MTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215
M G I PLKE+ V+ +HGA+ VDE H++G +G +G G+ E G +D + GT
Sbjct: 206 MLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTF 262
>pdb|2W8U|A Chain A, Spt With Plp, N100y
Length = 427
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 137/285 (48%), Gaps = 11/285 (3%)
Query: 190 LYGEHGAGIGERDGQLHNMDIIS-----GTLVNPEVAIHASMIQGIRNSSAPKIIYRHND 244
YG GA I G + N+ IIS G V + HAS+ G + +A + +RHN
Sbjct: 121 FYGTTGA-IVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNS 179
Query: 245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG 304
V L + L + + KLV E V+SM G I PLKE+ V+ +HGA+ VDE H++G +G
Sbjct: 180 VEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFG 239
Query: 305 EHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPT 364
+G G+ E G +D + GT + G +GG++V + +R +IFT SLPP+
Sbjct: 240 PNGRGVYEAQGLEGQIDFVVGTFSXSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPS 299
Query: 365 VLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPV--EHTPSHIIPIKIGNPA 422
V+A A +IR L + E R + L L +GF + E S I+ + + +
Sbjct: 300 VVATATTSIRKLMTAH--EKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQE 357
Query: 423 LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI 467
+ LL + G YV P P G +R + HT I
Sbjct: 358 QAAMMWQALL-DGGLYVNMARPPATPAGTFLLRCSICAEHTPAQI 401
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 103/177 (58%), Gaps = 4/177 (2%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL-GKM 98
EALEKFG+G G+R ++G H ++E+ + + +VF++ Y+AN + TL GK
Sbjct: 89 EALEKFGSGTYGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGK- 147
Query: 99 IPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHS 158
G + I DA +HAS+ G + +A + +RHN V L + L + + KLV E V+S
Sbjct: 148 --GEYVILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYS 205
Query: 159 MTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215
M G I PLKE+ V+ +HGA+ VDE H++G +G +G G+ E G +D + GT
Sbjct: 206 MLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTF 262
>pdb|2JG2|A Chain A, High Resolution Structure Of Spt With Plp Internal
Aldimine
Length = 422
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 137/285 (48%), Gaps = 11/285 (3%)
Query: 190 LYGEHGAGIGERDGQLHNMDIIS-----GTLVNPEVAIHASMIQGIRNSSAPKIIYRHND 244
YG GA I G + N+ IIS G V + HAS+ G + +A + +RHN
Sbjct: 122 FYGTTGA-IVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNS 180
Query: 245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG 304
V L + L + + KLV E V+SM G I PLKE+ V+ +HGA+ VDE H++G +G
Sbjct: 181 VEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFG 240
Query: 305 EHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPT 364
+G G+ E G +D + GT + G +GG++V + +R +IFT SLPP+
Sbjct: 241 PNGRGVYEAQGLEGQIDFVVGTFSXSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPS 300
Query: 365 VLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPV--EHTPSHIIPIKIGNPA 422
V+A A +IR L + E R + L L +GF + E S I+ + + +
Sbjct: 301 VVATATTSIRKLMTAH--EKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQE 358
Query: 423 LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI 467
+ LL + G YV P P G +R + HT I
Sbjct: 359 QAAMMWQALL-DGGLYVNMARPPATPAGTFLLRCSICAEHTPAQI 402
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 103/177 (58%), Gaps = 4/177 (2%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL-GKM 98
EALEKFG+G G+R ++G H ++E+ + + +VF++ Y+AN + TL GK
Sbjct: 90 EALEKFGSGTNGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGK- 148
Query: 99 IPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHS 158
G + I DA +HAS+ G + +A + +RHN V L + L + + KLV E V+S
Sbjct: 149 --GEYVILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYS 206
Query: 159 MTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215
M G I PLKE+ V+ +HGA+ VDE H++G +G +G G+ E G +D + GT
Sbjct: 207 MLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTF 263
>pdb|2W8T|A Chain A, Spt With Plp, N100c
Length = 427
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 137/285 (48%), Gaps = 11/285 (3%)
Query: 190 LYGEHGAGIGERDGQLHNMDIIS-----GTLVNPEVAIHASMIQGIRNSSAPKIIYRHND 244
YG GA I G + N+ IIS G V + HAS+ G + +A + +RHN
Sbjct: 121 FYGTTGA-IVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNS 179
Query: 245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG 304
V L + L + + KLV E V+SM G I PLKE+ V+ +HGA+ VDE H++G +G
Sbjct: 180 VEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFG 239
Query: 305 EHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPT 364
+G G+ E G +D + GT + G +GG++V + +R +IFT SLPP+
Sbjct: 240 PNGRGVYEAQGLEGQIDFVVGTFSXSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPS 299
Query: 365 VLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPV--EHTPSHIIPIKIGNPA 422
V+A A +IR L + E R + L L +GF + E S I+ + + +
Sbjct: 300 VVATATTSIRKLMTAH--EKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQE 357
Query: 423 LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI 467
+ LL + G YV P P G +R + HT I
Sbjct: 358 QAAMMWQALL-DGGLYVNMARPPATPAGTFLLRCSICAEHTPAQI 401
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 103/177 (58%), Gaps = 4/177 (2%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL-GKM 98
EALEKFG+G G+R ++G H ++E+ + + +VF++ Y+AN + TL GK
Sbjct: 89 EALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGK- 147
Query: 99 IPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHS 158
G + I DA +HAS+ G + +A + +RHN V L + L + + KLV E V+S
Sbjct: 148 --GEYVILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYS 205
Query: 159 MTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215
M G I PLKE+ V+ +HGA+ VDE H++G +G +G G+ E G +D + GT
Sbjct: 206 MLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTF 262
>pdb|1BS0|A Chain A, Plp-dependent Acyl-coa Synthase
pdb|2G6W|A Chain A, Suicide Inhibition Of A-Oxamine Synthase: Structures Of
The Covalent Adducts Of 8-Amino-7-Oxonanoate Synthase
With Trifluoroalanine
Length = 384
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 124/249 (49%), Gaps = 4/249 (1%)
Query: 223 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 282
HAS+++ S + + HNDV HL ++L + ++V E V SM G PL E+
Sbjct: 133 HASLLEAASLSPSQLRRFAHNDVTHLARLLAS-PCPGQQMVVTEGVFSMDGDSAPLAEIQ 191
Query: 283 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTK 342
+V+ QH VD+ H G+ GE G G Q +++ T GK FG G ++ +
Sbjct: 192 QVTQQHNGWLMVDDAHGTGVIGEQGRGSCWL--QKVKPELLVVTFGKGFGVSGAAVLCSS 249
Query: 343 NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI 402
D + +A I++TS+PP R ++ ++ S EG R K ++ R + +
Sbjct: 250 TVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL 309
Query: 403 GFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFH 462
F + + S I P+ +G+ + ++ + L+++G +V I PTVP G ++RL T H
Sbjct: 310 PFTLADSCSAIQPLIVGDNSRALQLAEK-LRQQGCWVTAIRPPTVPAGTARLRLTLTAAH 368
Query: 463 TREMIDKFV 471
+ ID+ +
Sbjct: 369 EMQDIDRLL 377
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 36 KCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL 95
+ + E+FG G+GG+ ++SG S+ H+ LEE++A+ L+F S + AN + + +
Sbjct: 60 RAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAM 119
Query: 96 GKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFET 155
M +D +HAS+++ S + + HNDV HL ++L + ++V E
Sbjct: 120 --MAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLAS-PCPGQQMVVTEG 176
Query: 156 VHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAG 197
V SM G PL E+ +V+ QH VD+ H G+ GE G G
Sbjct: 177 VFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRG 218
>pdb|1DJ9|A Chain A, Crystal Structure Of 8-Amino-7-Oxonanoate Synthase (Or
7-Keto- 8aminipelargonate Or Kapa Synthase) Complexed
With Plp And The Product 8(S)-Amino-7-Oxonanonoate (Or
Kapa). The Enzyme Of Biotin Biosynthetic Pathway.
pdb|1DJE|A Chain A, Crystal Structure Of The Plp-Bound Form Of
8-Amino-7-Oxonanoate Synthase
Length = 384
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 124/249 (49%), Gaps = 4/249 (1%)
Query: 223 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 282
HAS+++ S + + HNDV HL ++L + ++V E V SM G PL E+
Sbjct: 133 HASLLEAASLSPSQLRRFAHNDVTHLARLLAS-PCPGQQMVVTEGVFSMDGDSAPLAEIQ 191
Query: 283 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTK 342
+V+ QH VD+ H G+ GE G G Q +++ T GK FG G ++ +
Sbjct: 192 QVTQQHNGWLMVDDAHGTGVIGEQGRGSCWL--QKVKPELLVVTFGKGFGVSGAAVLCSS 249
Query: 343 NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI 402
D + +A I++TS+PP R ++ ++ S EG R K ++ R + +
Sbjct: 250 TVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL 309
Query: 403 GFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFH 462
F + + S I P+ +G+ + ++ + L+++G +V I PTVP G ++RL T H
Sbjct: 310 PFTLADSCSAIQPLIVGDNSRALQLAEK-LRQQGCWVTGIRPPTVPAGIARLRLTLTAAH 368
Query: 463 TREMIDKFV 471
+ ID+ +
Sbjct: 369 EMQDIDRLL 377
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 36 KCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL 95
+ + E+FG G+GG+ ++SG S+ H+ LEE++A+ L+F S + AN + + +
Sbjct: 60 RAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAM 119
Query: 96 GKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFET 155
M +D +HAS+++ S + + HNDV HL ++L + ++V E
Sbjct: 120 --MAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLAS-PCPGQQMVVTEG 176
Query: 156 VHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAG 197
V SM G PL E+ +V+ QH VD+ H G+ GE G G
Sbjct: 177 VFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRG 218
>pdb|4IW7|A Chain A, Crystal Structure Of 8-amino-7-oxononanoate Synthase
(biof) From Francisella Tularensis
Length = 399
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 120/252 (47%), Gaps = 20/252 (7%)
Query: 222 IHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL 281
IHAS+I GI+ S A Y+H ++ L + + + E V S +G+I L +L
Sbjct: 144 IHASIIDGIKLSQAKLRRYKHQQLSQLQDIYDG-----KSFITTEGVFSTSGSITQLDKL 198
Query: 282 CEVSHQHGALTFVDEVHAVGLYGEHGAG-IGERDGQLHNMDIISGTLGKAFGNIGGYIVG 340
+++ + VDE H+ G+ G++G G I N I LGKAFG +G +
Sbjct: 199 AKITPEK---LIVDEAHSFGVLGKNGRGAINSFRISYKNCLICVFPLGKAFGGVGAVVCT 255
Query: 341 TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI 400
T+ + + +A +I+TT+LPP +L A I++ + + + RA+ Q + + NEL
Sbjct: 256 TEAIAEYLIQFARNYIYTTALPPMILKAA--LIQLKNLENVNDNRARLQQNITFF-NELC 312
Query: 401 QIGFPVEHTPSHIIPIK---IGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLA 457
+E + PI+ + N L ++ D L + K V YPTVP + +R +
Sbjct: 313 DAK-DLELVSKDLSPIRSIQLNNANLAIRLKDKLFENK-IIVSXFRYPTVPKDQAILRFS 370
Query: 458 PTPFHTREMIDK 469
H+ D+
Sbjct: 371 ---LHSNNTFDQ 379
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 16/159 (10%)
Query: 42 LEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAN---DSTLFTLGKM 98
+K+G G+ G+ + G + ++ E + AK + F+S ++AN STLF+
Sbjct: 78 FDKYGFGSKGSNIVCGYTDETQQFEHEFAKFINYPRAIFFSSGFMANLAIYSTLFSKHDS 137
Query: 99 IPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHS 158
I YI HAS+I GI+ S A Y+H ++ L + + + E V S
Sbjct: 138 IFADKYI-----HASIIDGIKLSQAKLRRYKHQQLSQLQDIYDG-----KSFITTEGVFS 187
Query: 159 MTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAG 197
+G+I L +L +++ + VDE H+ G+ G++G G
Sbjct: 188 TSGSITQLDKLAKITPEK---LIVDEAHSFGVLGKNGRG 223
>pdb|3HQT|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3HQT|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3KKI|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3KKI|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
Length = 409
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 115/250 (46%), Gaps = 9/250 (3%)
Query: 223 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 282
H S+ +G R ++A + HN+ +HL +++ P ++ ++++S G I PL EL
Sbjct: 153 HMSLWEGARYANAQAHPFMHNNCDHLRMLIQRHG---PGIIVVDSIYSTLGTIAPLAELV 209
Query: 283 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTK 342
+S + G VDE H++G +G +GAG+ G + ++ +L K F G I
Sbjct: 210 NISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYRAGAIWCNN 269
Query: 343 NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAY-LRNELIQ 401
+ + IF+++L P AG + I+ S + R +H D +A LR L Q
Sbjct: 270 EVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADN---RRQHLDRMARKLRIGLSQ 326
Query: 402 IGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF 461
+G + + S II ++ G+ K+ D L+ G + P + IRL+
Sbjct: 327 LGLTIR-SESQIIGLETGDERNTEKVRDY-LESNGVFGSVFCRPATSKNKNIIRLSLNSD 384
Query: 462 HTREMIDKFV 471
E I K +
Sbjct: 385 VNDEQIAKII 394
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 65 LEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAP 124
+E+ +AK + L+ S + AN L T+ + P + D H S+ +G R ++A
Sbjct: 109 IEKRLAKFTGFDECLLSQSGWNANVGLLQTICQ--PNTNVYIDFFAHMSLWEGARYANAQ 166
Query: 125 KIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDE 184
+ HN+ +HL +++ P ++ ++++S G I PL EL +S + G VDE
Sbjct: 167 AHPFMHNNCDHLRMLIQRHG---PGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDE 223
Query: 185 VHAVGLYGEHGAGIGERDGQLHNMDIISGTLV 216
H++G +G +GAG+ G + ++ +L
Sbjct: 224 SHSLGTHGPNGAGLLAELGLTREVHFMTASLA 255
>pdb|2WK7|A Chain A, Structure Of Apo Form Of Vibrio Cholerae Cqsa
pdb|2WK7|B Chain B, Structure Of Apo Form Of Vibrio Cholerae Cqsa
Length = 393
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 115/250 (46%), Gaps = 9/250 (3%)
Query: 223 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 282
H S+ +G R ++A + HN+ +HL +++ P ++ ++++S G I PL EL
Sbjct: 133 HMSLWEGARYANAQAHPFMHNNCDHLRMLIQRHG---PGIIVVDSIYSTLGTIAPLAELV 189
Query: 283 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTK 342
+S + G VDE H++G +G +GAG+ G + ++ +L K F G I
Sbjct: 190 NISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYRAGAIWCNN 249
Query: 343 NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAY-LRNELIQ 401
+ + IF+++L P AG + I+ S + R +H D +A LR L Q
Sbjct: 250 EVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADN---RRQHLDRMARKLRIGLSQ 306
Query: 402 IGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF 461
+G + + S II ++ G+ K+ D L+ G + P + IRL+
Sbjct: 307 LGLTI-RSESQIIGLETGDERNTEKVRDY-LESNGVFGSVFCRPATSKNKNIIRLSLNSD 364
Query: 462 HTREMIDKFV 471
E I K +
Sbjct: 365 VNDEQIAKII 374
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 65 LEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAP 124
+E+ +AK + L+ S + AN L T+ + P + D H S+ +G R ++A
Sbjct: 89 IEKRLAKFTGFDECLLSQSGWNANVGLLQTICQ--PNTNVYIDFFAHMSLWEGARYANAQ 146
Query: 125 KIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDE 184
+ HN+ +HL +++ P ++ ++++S G I PL EL +S + G VDE
Sbjct: 147 AHPFMHNNCDHLRMLIQRHG---PGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDE 203
Query: 185 VHAVGLYGEHGAGIGERDGQLHNMDIISGTLV 216
H++G +G +GAG+ G + ++ +L
Sbjct: 204 SHSLGTHGPNGAGLLAELGLTREVHFMTASLA 235
>pdb|2WK8|A Chain A, Structure Of Holo Form Of Vibrio Cholerae Cqsa
pdb|2WK8|B Chain B, Structure Of Holo Form Of Vibrio Cholerae Cqsa
pdb|2WK9|A Chain A, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
pdb|2WK9|B Chain B, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
pdb|2WKA|A Chain A, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
Cholerae Cqsa
pdb|2WKA|B Chain B, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
Cholerae Cqsa
Length = 389
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 115/250 (46%), Gaps = 9/250 (3%)
Query: 223 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 282
H S+ +G R ++A + HN+ +HL +++ P ++ ++++S G I PL EL
Sbjct: 133 HMSLWEGARYANAQAHPFMHNNCDHLRMLIQRHG---PGIIVVDSIYSTLGTIAPLAELV 189
Query: 283 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTK 342
+S + G VDE H++G +G +GAG+ G + ++ +L K F G I
Sbjct: 190 NISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYRAGAIWCNN 249
Query: 343 NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAY-LRNELIQ 401
+ + IF+++L P AG + I+ S + R +H D +A LR L Q
Sbjct: 250 EVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADN---RRQHLDRMARKLRIGLSQ 306
Query: 402 IGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF 461
+G + + S II ++ G+ K+ D L+ G + P + IRL+
Sbjct: 307 LGLTIR-SESQIIGLETGDERNTEKVRDY-LESNGVFGSVFCRPATSKNKNIIRLSLNSD 364
Query: 462 HTREMIDKFV 471
E I K +
Sbjct: 365 VNDEQIAKII 374
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 65 LEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAP 124
+E+ +AK + L+ S + AN L T+ + P + D H S+ +G R ++A
Sbjct: 89 IEKRLAKFTGFDECLLSQSGWNANVGLLQTICQ--PNTNVYIDFFAHMSLWEGARYANAQ 146
Query: 125 KIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDE 184
+ HN+ +HL +++ P ++ ++++S G I PL EL +S + G VDE
Sbjct: 147 AHPFMHNNCDHLRMLIQRHG---PGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDE 203
Query: 185 VHAVGLYGEHGAGIGERDGQLHNMDIISGTLV 216
H++G +G +GAG+ G + ++ +L
Sbjct: 204 SHSLGTHGPNGAGLLAELGLTREVHFMTASLA 235
>pdb|2DR1|A Chain A, Crystal Structure Of The Ph1308 Protein From Pyrococcus
Horikoshii Ot3
pdb|2DR1|B Chain B, Crystal Structure Of The Ph1308 Protein From Pyrococcus
Horikoshii Ot3
Length = 386
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 27/166 (16%)
Query: 269 HSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG 328
+ TG + PL EL +V+ +H L FVD V A+G GA I +D++ +
Sbjct: 156 ETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMG-----GADI---KFDKWGLDVVFSSSQ 207
Query: 329 KAFGNIGGYIVG--TKNFIDTIRSYAA-GFIF--------------TTSLPPT-VLAGAR 370
KAFG G +G ++ F++ G+ F T S PP + G
Sbjct: 208 KAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGIN 267
Query: 371 EAIRILSSQEGVELRAK-HQDIVAYLRNELIQIGFPVEHTPSHIIP 415
A+RI+ G E + ++ +R + +IG + P H P
Sbjct: 268 VALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGLDILAEPGHESP 313
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 157 HSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
+ TG + PL EL +V+ +H L FVD V A+G
Sbjct: 156 ETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMG 188
>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii
L-Methionine-Lyase
Length = 398
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 14/127 (11%)
Query: 63 EKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNS- 121
+ LE+ +A L + EAGL S A +TL TL + G H +S AS I G ++
Sbjct: 67 DALEKKLAVLERGEAGLATASGISAITTTLLTLCQQ--GDHIVS-----ASAIYGCTHAF 119
Query: 122 ---SAPK--IIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH 176
S PK I R D ++ M + K+V ET + T ++ ++ + ++HQ
Sbjct: 120 LSHSMPKFGINVRFVDAGKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQ 178
Query: 177 GALTFVD 183
GAL VD
Sbjct: 179 GALLVVD 185
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM 320
K+V ET + T ++ ++ + ++HQ GAL VD + Y + +G D +H++
Sbjct: 151 KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTF-MSPYCQQPLQLGA-DIVVHSV 208
Query: 321 DIISGTLGKAFGNIGGYIVGTKNFIDTIR 349
G IGG IVG + FID R
Sbjct: 209 TXYINGHGDV---IGGIIVGKQEFIDQAR 234
>pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii
Length = 398
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 14/127 (11%)
Query: 63 EKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNS- 121
+ LE+ +A L + EAGL S A +TL TL + G H +S AS I G ++
Sbjct: 67 DALEKKLAVLERGEAGLATASGISAITTTLLTLCQQ--GDHIVS-----ASAIYGCTHAF 119
Query: 122 ---SAPK--IIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH 176
S PK I R D ++ M + K+V ET + T ++ ++ + ++HQ
Sbjct: 120 LSHSMPKFGINVRFVDAAKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQ 178
Query: 177 GALTFVD 183
GAL VD
Sbjct: 179 GALLVVD 185
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM 320
K+V ET + T ++ ++ + ++HQ GAL VD + Y + +G D +H++
Sbjct: 151 KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTF-MSPYCQQPLQLGA-DIVVHSV 208
Query: 321 DIISGTLGKAFGNIGGYIVGTKNFIDTIR 349
G IGG IVG + FID R
Sbjct: 209 TXYINGHGDV---IGGIIVGKQEFIDQAR 234
>pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With
Pyridoximine-5'- Phosphate
Length = 398
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 14/127 (11%)
Query: 63 EKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNS- 121
+ LE+ +A L + EAGL S A +TL TL + G H +S AS I G ++
Sbjct: 67 DALEKKLAVLERGEAGLATASGISAITTTLLTLCQQ--GDHIVS-----ASAIYGXTHAF 119
Query: 122 ---SAPK--IIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH 176
S PK I D ++ M + K+V ET + T ++ ++ + ++HQ
Sbjct: 120 LSHSMPKFGINVSFVDAAKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQ 178
Query: 177 GALTFVD 183
GAL VD
Sbjct: 179 GALLVVD 185
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM 320
K+V ET + T ++ ++ + ++HQ GAL VD + Y + +G
Sbjct: 151 KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTF-MSPYXQQPLQLG--------A 201
Query: 321 DIISGTLGKAFGN----IGGYIVGTKNFIDTIR 349
DI+ ++ K IGG IVG + FID R
Sbjct: 202 DIVVHSVTKYINGHGDVIGGIIVGKQEFIDQAR 234
>pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With S-Ethyl-Cysteine
Length = 398
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 14/127 (11%)
Query: 63 EKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNS- 121
+ LE+ +A L + EAGL S A +TL TL + G H +S AS I G ++
Sbjct: 67 DALEKKLAVLERGEAGLATASGISAITTTLLTLCQQ--GDHIVS-----ASAIYGCTHAF 119
Query: 122 ---SAPK--IIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH 176
S PK I D ++ M + K+V ET + T ++ ++ + ++HQ
Sbjct: 120 LSHSMPKFGINVSFVDAAKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQ 178
Query: 177 GALTFVD 183
GAL VD
Sbjct: 179 GALLVVD 185
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM 320
K+V ET + T ++ ++ + ++HQ GAL VD + Y + +G D +H++
Sbjct: 151 KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTF-MSPYCQQPLQLGA-DIVVHSV 208
Query: 321 DIISGTLGKAFGNIGGYIVGTKNFIDTIR 349
G IGG IVG + FID R
Sbjct: 209 TXYINGHGDV---IGGIIVGKQEFIDQAR 234
>pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Methionine Phosphinate
pdb|3JWB|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Norleucine
Length = 398
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 14/127 (11%)
Query: 63 EKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNS- 121
+ LE+ +A L + EAGL S A +TL TL + G H +S AS I G ++
Sbjct: 67 DALEKKLAVLERGEAGLATASGISAITTTLLTLCQQ--GDHIVS-----ASAIYGCTHAF 119
Query: 122 ---SAPK--IIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH 176
S PK I D ++ M + K+V ET + T ++ ++ + ++HQ
Sbjct: 120 LSHSMPKFGINVSFVDAAKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQ 178
Query: 177 GALTFVD 183
GAL VD
Sbjct: 179 GALLVVD 185
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM 320
K+V ET + T ++ ++ + ++HQ GAL VD + Y + +G D +H++
Sbjct: 151 KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTF-MSPYCQQPLQLGA-DIVVHSV 208
Query: 321 DIISGTLGKAFGNIGGYIVGTKNFIDTIR 349
G IGG IVG + FID R
Sbjct: 209 TXYINGHGDV---IGGIIVGKQEFIDQAR 234
>pdb|3ZRP|A Chain A, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
pdb|3ZRP|B Chain B, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
pdb|3ZRQ|A Chain A, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
pdb|3ZRQ|B Chain B, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
pdb|3ZRR|A Chain A, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
pdb|3ZRR|B Chain B, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
Length = 384
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 62/156 (39%), Gaps = 32/156 (20%)
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM 320
KLVA V + TG P+K++ ++ L VD V +VG E + N+
Sbjct: 129 KLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGA--------EEVKAEEWNV 180
Query: 321 DIISGTLGKAF----------------------GNIGGYIVGTKNFIDTIRSYAAGFIFT 358
D+ KA +I GY + +N++ +R G
Sbjct: 181 DVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAY 240
Query: 359 TSLPPT-VLAGAREAIRILSSQEGVELRAKHQDIVA 393
+ PP V+ EA R++ +EG+E R K +VA
Sbjct: 241 FATPPVHVILQLAEAFRLI-EKEGIENRIKRHTMVA 275
>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase
(D-Phgat) From Pseudomonas Strutzeri St-201
Length = 453
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 121 SSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP-----LKELCEVSHQ 175
++A ++ R +D+ + +V N I +A E V S G + P L+E E++ Q
Sbjct: 176 TTANTLLIRPDDIEGMREVFANHGSDIAAFIA-EPVGSHFG-VTPVSDSFLREGAELARQ 233
Query: 176 HGALTFVDEVHAVGLYGEHG 195
+GAL +DEV + G HG
Sbjct: 234 YGALFILDEVISGFRVGNHG 253
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 233 SSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP-----LKELCEVSHQ 287
++A ++ R +D+ + +V N I +A E V S G + P L+E E++ Q
Sbjct: 176 TTANTLLIRPDDIEGMREVFANHGSDIAAFIA-EPVGSHFG-VTPVSDSFLREGAELARQ 233
Query: 288 HGALTFVDEVHAVGLYGEHG 307
+GAL +DEV + G HG
Sbjct: 234 YGALFILDEVISGFRVGNHG 253
>pdb|3FDB|A Chain A, Crystal Structure Of A Putative Plp-Dependent
Beta-Cystathionase (Aecd, Dip1736) From Corynebacterium
Diphtheriae At 1.99 A Resolution
Length = 377
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 166 LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERD 202
L ELC+++H++ A VDE+HA ++ G+H G D
Sbjct: 172 LNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSD 209
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 278 LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERD 314
L ELC+++H++ A VDE+HA ++ G+H G D
Sbjct: 172 LNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSD 209
>pdb|1JG8|A Chain A, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|B Chain B, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|C Chain C, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|D Chain D, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1M6S|A Chain A, Crystal Structure Of Threonine Aldolase
pdb|1M6S|B Chain B, Crystal Structure Of Threonine Aldolase
pdb|1M6S|C Chain C, Crystal Structure Of Threonine Aldolase
pdb|1M6S|D Chain D, Crystal Structure Of Threonine Aldolase
Length = 347
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 86/191 (45%), Gaps = 17/191 (8%)
Query: 244 DVNHLTQVLENMDVKIPK--LVAFETVHSMTGA-ICPL---KELCEVSHQHGALTFVDEV 297
D + + + + ++ P+ L+A E H+ +G + PL KE+C ++ +HG +D
Sbjct: 115 DPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGA 174
Query: 298 HAVGLYGEHGAGIGERDGQLHN-MDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFI 356
G + E G + M +S L G++ +VG ++FI+ R+ A +
Sbjct: 175 RIFNASIASGVPVKEYAGYADSVMFCLSXGLCAPVGSV---VVGDRDFIE--RARKARKM 229
Query: 357 FTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPV--EHTPSHII 414
+ AG A I++ + V+ + + +L +L +IG+ V E ++++
Sbjct: 230 LGGGMRQ---AGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMV 286
Query: 415 PIKIGNPALNT 425
++ N +N
Sbjct: 287 ILRTDNLKVNA 297
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 132 DVNHLTQVLENMDVKIPK--LVAFETVHSMTGA-ICPL---KELCEVSHQHGALTFVD 183
D + + + + ++ P+ L+A E H+ +G + PL KE+C ++ +HG +D
Sbjct: 115 DPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHID 172
>pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE
PERSULFIDE Intermediate (Residue Css).
pdb|1KMK|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.20A WITH THE CYSTEINE
PERSELENIDE Intermediate (Residue Csz)
Length = 406
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 149 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAV 188
+L+A V ++ G PL E+ ++HQHGA VD AV
Sbjct: 166 RLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAV 205
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAV 300
+L+A V ++ G PL E+ ++HQHGA VD AV
Sbjct: 166 RLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAV 205
>pdb|2FM1|A Chain A, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|B Chain B, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|C Chain C, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|D Chain D, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
Length = 355
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 86/191 (45%), Gaps = 17/191 (8%)
Query: 244 DVNHLTQVLENMDVKIPK--LVAFETVHSMTGA-ICPL---KELCEVSHQHGALTFVDEV 297
D + + + + ++ P+ L+A E H+ +G + PL KE+C ++ +HG +D
Sbjct: 123 DPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGA 182
Query: 298 HAVGLYGEHGAGIGERDGQLHN-MDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFI 356
G + E G + M +S L G++ +VG ++FI+ R+ A +
Sbjct: 183 RIFNASIASGVPVKEYAGYADSVMFCLSXGLCAPVGSV---VVGDRDFIE--RARKARKM 237
Query: 357 FTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPV--EHTPSHII 414
+ AG A I++ + V+ + + +L +L +IG+ V E ++++
Sbjct: 238 LGGGMRQ---AGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMV 294
Query: 415 PIKIGNPALNT 425
++ N +N
Sbjct: 295 ILRTDNLKVNA 305
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 132 DVNHLTQVLENMDVKIPK--LVAFETVHSMTGA-ICPL---KELCEVSHQHGALTFVD 183
D + + + + ++ P+ L+A E H+ +G + PL KE+C ++ +HG +D
Sbjct: 123 DPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHID 180
>pdb|1JF9|A Chain A, Crystal Structure Of Selenocysteine Lyase
Length = 408
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 149 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAV 188
+L+A V ++ G PL E+ ++HQHGA VD AV
Sbjct: 168 RLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAV 207
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAV 300
+L+A V ++ G PL E+ ++HQHGA VD AV
Sbjct: 168 RLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAV 207
>pdb|1I29|A Chain A, Crystal Structure Of Csdb Complexed With
L-Propargylglycine
Length = 406
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 149 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAV 188
+L+A V ++ G PL E+ ++HQHGA VD AV
Sbjct: 166 RLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAV 205
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAV 300
+L+A V ++ G PL E+ ++HQHGA VD AV
Sbjct: 166 RLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAV 205
>pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue
Length = 406
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 149 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAV 188
+L+A V ++ G PL E+ ++HQHGA VD AV
Sbjct: 166 RLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAV 205
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAV 300
+L+A V ++ G PL E+ ++HQHGA VD AV
Sbjct: 166 RLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAV 205
>pdb|1LW4|A Chain A, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|B Chain B, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|C Chain C, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|D Chain D, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW5|A Chain A, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|B Chain B, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|C Chain C, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|D Chain D, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
Length = 347
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 10/113 (8%)
Query: 244 DVNHLTQVLENMDVKIPK--LVAFETVHSMTGA-ICPL---KELCEVSHQHGALTFVDEV 297
D + + + + ++ P+ L+A E H+ +G + PL KE+C ++ +HG +D
Sbjct: 115 DPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGA 174
Query: 298 HAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF-GNIGGYIVGTKNFIDTIR 349
G + E G D + L +G +VG ++FI+ R
Sbjct: 175 RIFNASIASGVPVKEYAGY---ADSVXFCLSXGLCAPVGSVVVGDRDFIERAR 224
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 132 DVNHLTQVLENMDVKIPK--LVAFETVHSMTGA-ICPL---KELCEVSHQHGALTFVD 183
D + + + + ++ P+ L+A E H+ +G + PL KE+C ++ +HG +D
Sbjct: 115 DPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHID 172
>pdb|1H0C|A Chain A, The Crystal Structure Of Human Alanine:glyoxylate
Aminotransferase
Length = 392
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 15/172 (8%)
Query: 248 LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG---LYG 304
L +V E + P L+ S TG + PL E+ H++ L VD V ++G LY
Sbjct: 136 LQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYM 195
Query: 305 EHGAGIGERDGQLHNMDIISGTLGKAFGNIGG---YIVGTKNFIDTIR-SYAAGF----- 355
+ G ++ GT +F + Y TK F + + A F
Sbjct: 196 DRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDD 255
Query: 356 ---IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGF 404
++ ++P L RE++ +++ Q +H++ AYL L +G
Sbjct: 256 QPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGL 307
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 136 LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
L +V E + P L+ S TG + PL E+ H++ L VD V ++G
Sbjct: 136 LQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLG 189
>pdb|1J04|A Chain A, Structural Mechanism Of Enzyme Mistargeting In Hereditary
Kidney Stone Disease In Vitro
Length = 392
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 15/172 (8%)
Query: 248 LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG---LYG 304
L +V E + P L+ S TG + PL E+ H++ L VD V ++G LY
Sbjct: 136 LQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFRELCHRYKCLLLVDSVASLGGTPLYM 195
Query: 305 EHGAGIGERDGQLHNMDIISGTLGKAFGNIGG---YIVGTKNFIDTIR-SYAAGF----- 355
+ G ++ GT +F + Y TK F + + A F
Sbjct: 196 DRQGIDILYSGSQXALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDD 255
Query: 356 ---IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGF 404
++ ++P L RE++ +++ Q +H++ AYL L +G
Sbjct: 256 QPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGL 307
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 136 LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
L +V E + P L+ S TG + PL E+ H++ L VD V ++G
Sbjct: 136 LQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFRELCHRYKCLLLVDSVASLG 189
>pdb|3R9A|A Chain A, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|C Chain C, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 394
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 15/172 (8%)
Query: 248 LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG---LYG 304
L +V E + P L+ S TG + PL E+ H++ L VD V ++G LY
Sbjct: 138 LQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYM 197
Query: 305 EHGAGIGERDGQLHNMDIISGTLGKAFGNIGG---YIVGTKNFIDTIR-SYAAGF----- 355
+ G ++ GT +F + Y TK F + + A F
Sbjct: 198 DRQGIDILYSGSQXALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDD 257
Query: 356 ---IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGF 404
++ ++P L RE++ +++ Q +H++ AYL L +G
Sbjct: 258 QPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGL 309
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 136 LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
L +V E + P L+ S TG + PL E+ H++ L VD V ++G
Sbjct: 138 LQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLG 191
>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|B Chain B, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|C Chain C, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|D Chain D, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
Length = 398
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 65 LEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGN------HASMIQGI 118
LE +A L EAGL S A STL+TL + PG + GN A + GI
Sbjct: 70 LEARMASLEGGEAGLALASGMGAITSTLWTL--LRPGDEVL--LGNTLYGCTFAFLHHGI 125
Query: 119 RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGA 178
+ RH D+ L Q LE +++ FE+ + + + + +++ +HGA
Sbjct: 126 GEFG---VKLRHVDMADL-QALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGA 181
Query: 179 LTFVDEVH 186
VD +
Sbjct: 182 TVVVDNTY 189
>pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK3|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK4|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
Length = 398
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 65 LEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGN------HASMIQGI 118
LE +A L EAGL S A STL+TL + PG + GN A + GI
Sbjct: 70 LEARMASLEGGEAGLALASGMGAITSTLWTL--LRPGDEVL--LGNTLYGHTFAFLHHGI 125
Query: 119 RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGA 178
+ RH D+ L Q LE +++ FE+ + + + + +++ +HGA
Sbjct: 126 GEFG---VKLRHVDMADL-QALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGA 181
Query: 179 LTFVDEVH 186
VD +
Sbjct: 182 TVVVDNTY 189
>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1UKJ|A Chain A, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|B Chain B, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|C Chain C, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|D Chain D, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|2O7C|A Chain A, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|B Chain B, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|C Chain C, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|D Chain D, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
Length = 398
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 65 LEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGN------HASMIQGI 118
LE +A L EAGL S A STL+TL + PG + GN A + GI
Sbjct: 70 LEARMASLEGGEAGLALASGMGAITSTLWTL--LRPGDEVL--LGNTLYGCTFAFLHHGI 125
Query: 119 RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGA 178
+ RH D+ L Q LE +++ FE+ + + + + +++ +HGA
Sbjct: 126 GEFG---VKLRHVDMADL-QALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGA 181
Query: 179 LTFVDEVH 186
VD +
Sbjct: 182 TVVVDNTY 189
>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|B Chain B, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|C Chain C, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|D Chain D, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
Length = 429
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 66/174 (37%), Gaps = 12/174 (6%)
Query: 238 IIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTF 293
I +ND+ + E I V E V G + P L+ L EV+ Q+GAL
Sbjct: 180 ITVAYNDLESVKYAFEQFGDDI-ACVIVEPVAGNXGVVPPQPGFLEGLREVTEQNGALLI 238
Query: 294 VDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF--GNIGGYIVGTKNFIDTIRSY 351
DEV G + G G G ++ + +G G GG + + Y
Sbjct: 239 FDEV-XTGFRVAYNCGQGYY-GVTPDLTCLGKVIGGGLPVGAYGGKAEIXRQVAPSGPIY 296
Query: 352 AAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFP 405
AG T S P A E + L+ + VE K + + A LR + G P
Sbjct: 297 QAG---TLSGNPLAXAAGYETLVQLTPESYVEFERKAEXLEAGLRKAAEKHGIP 347
>pdb|1VJO|A Chain A, Crystal Structure Of Alanine--Glyoxylate Aminotransferase
(Alr1004) From Nostoc Sp. At 1.70 A Resolution
Length = 393
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/218 (19%), Positives = 76/218 (34%), Gaps = 57/218 (26%)
Query: 230 IRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHG 289
+R S P +V L ++ ++ P ++A + TGA PL+ + E+ + G
Sbjct: 135 VRTISKP-----WGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFG 189
Query: 290 ALTFVDEVHAVG-------------LYGEHGAGIG-------------------ERDGQL 317
L VD V ++G Y G+G R ++
Sbjct: 190 TLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTXSSRAIEKLQRRRTKV 249
Query: 318 HNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS 377
N + LGK +G + ++ + P + REA+R+++
Sbjct: 250 ANWYLDXNLLGKYWG--------------------SERVYHHTAPINLYYALREALRLIA 289
Query: 378 SQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIP 415
+ +HQ V YL L IG + + +P
Sbjct: 290 QEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLP 327
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 101 GLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT 160
G + AG + + +R S P +V L ++ ++ P ++A + T
Sbjct: 121 GNRLVDXAGRYGA---DVRTISKP-----WGEVFSLEELRTALETHRPAILALVHAETST 172
Query: 161 GAICPLKELCEVSHQHGALTFVDEVHAVG 189
GA PL+ + E+ + G L VD V ++G
Sbjct: 173 GARQPLEGVGELCREFGTLLLVDTVTSLG 201
>pdb|1NR1|A Chain A, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|B Chain B, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|C Chain C, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|D Chain D, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|E Chain E, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|F Chain F, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
Length = 496
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 312 ERDGQLHNMDIISGTLGKAFGNIGGY--IVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGA 369
ERD H + + +L + FG GG IV T F D I + I + L T+ A A
Sbjct: 397 ERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMEASA 456
Query: 370 REAIRI-LSSQEGVELR 385
R+ +R + G++LR
Sbjct: 457 RQIMRTAMKYNLGLDLR 473
>pdb|3KGX|A Chain A, Crystal Structure Of Putative Aminotransferase
(Aah25799.1) From Mus Musculus At 1.80 A Resolution
pdb|3KGX|B Chain B, Crystal Structure Of Putative Aminotransferase
(Aah25799.1) From Mus Musculus At 1.80 A Resolution
pdb|3KGW|A Chain A, Crystal Structure Of Putative Aminotransferase
(Aah25799.1) From Mus Musculus At 1.65 A Resolution
pdb|3KGW|B Chain B, Crystal Structure Of Putative Aminotransferase
(Aah25799.1) From Mus Musculus At 1.65 A Resolution
Length = 393
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 79 LVFTSCYVANDSTLFTLGKMIPGLHYISDA----GNHASMIQGIRNSSAPKIIYRHNDVN 134
+V S + A ++ LF L + PG +++ G A+ I + ++I + +
Sbjct: 78 VVSGSGHCAMETALFNL--LEPGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPGEHY 135
Query: 135 HLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
L +V E + P L+ S TG + PL E+ H++ L VD V ++G
Sbjct: 136 TLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLG 190
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 69/173 (39%), Gaps = 17/173 (9%)
Query: 248 LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG----LY 303
L +V E + P L+ S TG + PL E+ H++ L VD V ++G
Sbjct: 137 LQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYM 196
Query: 304 GEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTK-----NFIDTIRSYAAGF--- 355
+ G I Q ++ G +F + Y V ++ +F I A +
Sbjct: 197 DQQGIDIMYSSSQ-KVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCE 255
Query: 356 ----IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGF 404
+ + P T L RE++ +++ Q +H++ A+L L ++G
Sbjct: 256 GETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGL 308
>pdb|3ISL|A Chain A, Crystal Structure Of Ureidoglycine-Glyoxylate
Aminotransferase (Pucg) From Bacillus Subtilis
pdb|3ISL|B Chain B, Crystal Structure Of Ureidoglycine-Glyoxylate
Aminotransferase (Pucg) From Bacillus Subtilis
Length = 416
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 148 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
PK+VA + TG I PLK + E AL VD V +G
Sbjct: 137 PKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIG 178
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 260 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
PK+VA + TG I PLK + E AL VD V +G
Sbjct: 137 PKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIG 178
>pdb|3L8A|A Chain A, Crystal Structure Of Metc From Streptococcus Mutans
pdb|3L8A|B Chain B, Crystal Structure Of Metc From Streptococcus Mutans
Length = 421
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 278 LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGG 336
L ++ E+ +HG + DE+H + L+G + D + II + K F
Sbjct: 216 LIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFN---- 271
Query: 337 YIVGTKNFIDTIRS 350
I GTKN I++
Sbjct: 272 -IAGTKNSFAIIQN 284
>pdb|3MW9|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MVO|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVQ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3QMU|A Chain A, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|B Chain B, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|C Chain C, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|D Chain D, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|E Chain E, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|F Chain F, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|G Chain G, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|H Chain H, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|I Chain I, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|J Chain J, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|K Chain K, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|L Chain L, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
Length = 501
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 312 ERDGQLHNMDIISGTLGKAFGNIGGY--IVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGA 369
ERD H + + +L + FG GG IV T F D I + I + L T+ A
Sbjct: 402 ERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSA 461
Query: 370 REAIRI-LSSQEGVELR 385
R+ +R + G++LR
Sbjct: 462 RQIMRTAMKYNLGLDLR 478
>pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|B Chain B, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|C Chain C, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|D Chain D, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|E Chain E, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|F Chain F, Structure Of Human Glutamate Dehydrogenase-Apo Form
Length = 505
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 312 ERDGQLHNMDIISGTLGKAFGNIGGY--IVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGA 369
ERD H + + +L + FG GG IV T F D I + I + L T+ A
Sbjct: 406 ERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSA 465
Query: 370 REAIRI-LSSQEGVELR 385
R+ +R + G++LR
Sbjct: 466 RQIMRTAMKYNLGLDLR 482
>pdb|1NQT|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|G Chain G, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|H Chain H, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|I Chain I, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|J Chain J, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|K Chain K, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|L Chain L, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NR7|A Chain A, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|B Chain B, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|C Chain C, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|D Chain D, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|E Chain E, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|F Chain F, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|G Chain G, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|H Chain H, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|I Chain I, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|J Chain J, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|K Chain K, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|L Chain L, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
Length = 496
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 312 ERDGQLHNMDIISGTLGKAFGNIGGY--IVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGA 369
ERD H + + +L + FG GG IV T F D I + I + L T+ A
Sbjct: 397 ERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSA 456
Query: 370 REAIRI-LSSQEGVELR 385
R+ +R + G++LR
Sbjct: 457 RQIMRTAMKYNLGLDLR 473
>pdb|4H86|A Chain A, Crystal Structure Of Ahp1 From Saccharomyces Cerevisiae In
Reduced Form
Length = 199
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 109 GNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHS------MTGA 162
G+H + + + N P Y+ + ++ K+P+ V + + S +TGA
Sbjct: 18 GSHMASMSDLVNKKFPAGDYKFQYIAISQSDADSESCKMPQTVEWSKLISENKKVIITGA 77
Query: 163 ICPLKELCEVSHQHGALTFVDEV 185
C VSH G + ++DE+
Sbjct: 78 PAAFSPTCTVSHIPGYINYLDEL 100
>pdb|1HWY|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWZ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
Length = 501
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 312 ERDGQLHNMDIISGTLGKAFGNIGGY--IVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGA 369
ERD H + + +L + FG GG IV T F D I + I + L T+ A
Sbjct: 402 ERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSA 461
Query: 370 REAIRI-LSSQEGVELR 385
R+ +R + G++LR
Sbjct: 462 RQIMRTAMKYNLGLDLR 478
>pdb|3ETD|A Chain A, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|B Chain B, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|C Chain C, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|D Chain D, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|E Chain E, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|F Chain F, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETE|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETG|A Chain A, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|B Chain B, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|C Chain C, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|D Chain D, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|E Chain E, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|F Chain F, Glutamate Dehydrogenase Complexed With Gw5074
Length = 501
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 312 ERDGQLHNMDIISGTLGKAFGNIGGY--IVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGA 369
ERD H + + +L + FG GG IV T F D I + I + L T+ A
Sbjct: 402 ERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSA 461
Query: 370 REAIRI-LSSQEGVELR 385
R+ +R + G++LR
Sbjct: 462 RQIMRTAMKYNLGLDLR 478
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 85 YVANDSTLFTLGKMIPG-LHYISDAGNHASMIQGIRN 120
Y + D F + +++ G LHY+ D GN A++I+G N
Sbjct: 877 YNSGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSN 913
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 85 YVANDSTLFTLGKMIPG-LHYISDAGNHASMIQGIRN 120
Y + D F + +++ G LHY+ D GN A++I+G N
Sbjct: 886 YNSGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSN 922
>pdb|3S4K|A Chain A, Structure Of A Putative Esterase Rv1847MT1895 FROM
MYCOBACTERIUM Tuberculosis
pdb|3S4K|B Chain B, Structure Of A Putative Esterase Rv1847MT1895 FROM
MYCOBACTERIUM Tuberculosis
Length = 144
Score = 28.9 bits (63), Expect = 6.5, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 335 GGYIVGTKNFIDTIRSYAAGFIFTTSLP 362
GG +VG N D +RS ++G ++ T+ P
Sbjct: 81 GGSVVGVNNNTDFVRSISSGMVYGTAEP 108
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 85 YVANDSTLFTLGKMIPG-LHYISDAGNHASMIQGIRN 120
Y + D F + +++ G LHY+ D GN A++I+G N
Sbjct: 661 YNSGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSN 697
>pdb|3ASI|A Chain A, Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns6
Length = 410
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 85 YVANDSTLFTLGKMIPG-LHYISDAGNHASMIQGIRN 120
Y + D F + +++ G LHY+ D GN A++I+G N
Sbjct: 45 YNSGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSN 81
>pdb|1T3I|A Chain A, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
pdb|1T3I|B Chain B, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
Length = 420
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 13/112 (11%)
Query: 244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY 303
D+ H +L + KLV + + G + P +E+ +++HQ GA VD + Y
Sbjct: 158 DLEHFKTLLS----EKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHY 213
Query: 304 GEHGAGIGERDGQLHNMDIISGTLGKAFGNIG-GYIVGTKNFIDTIRSYAAG 354
D QL + D + + K G G++ G + ++ + + G
Sbjct: 214 --------PLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEILEAMPPFFGG 257
>pdb|3DR7|A Chain A, Gdp-perosamine Synthase From Caulobacter Crescentus With
Bound Gdp-3-deoxyperosamine
pdb|3DR7|B Chain B, Gdp-perosamine Synthase From Caulobacter Crescentus With
Bound Gdp-3-deoxyperosamine
pdb|3DR7|C Chain C, Gdp-perosamine Synthase From Caulobacter Crescentus With
Bound Gdp-3-deoxyperosamine
pdb|3DR7|D Chain D, Gdp-perosamine Synthase From Caulobacter Crescentus With
Bound Gdp-3-deoxyperosamine
Length = 391
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 148 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
P+ A VH + G IC + + EV+ +H L D AVG
Sbjct: 143 PRTKAIMPVH-LYGQICDMDPILEVARRHNLLVIEDAAEAVG 183
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 260 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
P+ A VH + G IC + + EV+ +H L D AVG
Sbjct: 143 PRTKAIMPVH-LYGQICDMDPILEVARRHNLLVIEDAAEAVG 183
>pdb|3DR4|A Chain A, Gdp-Perosamine Synthase K186a Mutant From Caulobacter
Crescentus With Bound Sugar Ligand
pdb|3DR4|B Chain B, Gdp-Perosamine Synthase K186a Mutant From Caulobacter
Crescentus With Bound Sugar Ligand
pdb|3DR4|C Chain C, Gdp-Perosamine Synthase K186a Mutant From Caulobacter
Crescentus With Bound Sugar Ligand
pdb|3DR4|D Chain D, Gdp-Perosamine Synthase K186a Mutant From Caulobacter
Crescentus With Bound Sugar Ligand
Length = 391
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 148 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
P+ A VH + G IC + + EV+ +H L D AVG
Sbjct: 143 PRTKAIMPVH-LYGQICDMDPILEVARRHNLLVIEDAAEAVG 183
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 260 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
P+ A VH + G IC + + EV+ +H L D AVG
Sbjct: 143 PRTKAIMPVH-LYGQICDMDPILEVARRHNLLVIEDAAEAVG 183
>pdb|3BN1|A Chain A, Crystal Structure Of Gdp-Perosamine Synthase
pdb|3BN1|B Chain B, Crystal Structure Of Gdp-Perosamine Synthase
pdb|3BN1|C Chain C, Crystal Structure Of Gdp-Perosamine Synthase
pdb|3BN1|D Chain D, Crystal Structure Of Gdp-Perosamine Synthase
Length = 373
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 148 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
P+ A VH + G IC + + EV+ +H L D AVG
Sbjct: 125 PRTKAIMPVH-LYGQICDMDPILEVARRHNLLVIEDAAEAVG 165
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 260 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
P+ A VH + G IC + + EV+ +H L D AVG
Sbjct: 125 PRTKAIMPVH-LYGQICDMDPILEVARRHNLLVIEDAAEAVG 165
>pdb|2PO3|A Chain A, Crystal Structure Analysis Of Desi In The Presence Of Its
Tdp-Sugar Product
pdb|2PO3|B Chain B, Crystal Structure Analysis Of Desi In The Presence Of Its
Tdp-Sugar Product
Length = 424
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 260 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHN 319
P+ A VH + G C +L +V+ +HG + D HA+G A G G L +
Sbjct: 137 PRTSAVVGVH-LWGRPCAADQLRKVADEHGLRLYFDAAHALGC-----AVDGRPAGSLGD 190
Query: 320 MDIISGTLGKAFGNIGGYIVGTKN 343
++ S KA G V T +
Sbjct: 191 AEVFSFHATKAVNAFEGGAVVTDD 214
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,384,312
Number of Sequences: 62578
Number of extensions: 666707
Number of successful extensions: 1834
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1689
Number of HSP's gapped (non-prelim): 131
length of query: 514
length of database: 14,973,337
effective HSP length: 103
effective length of query: 411
effective length of database: 8,527,803
effective search space: 3504927033
effective search space used: 3504927033
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)