Query psy16848
Match_columns 514
No_of_seqs 200 out of 2687
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 23:37:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16848.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16848hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqx_A 2-amino-3-ketobutyrate 100.0 6.4E-40 2.2E-44 335.6 34.1 355 14-482 39-397 (399)
2 2w8t_A SPT, serine palmitoyltr 100.0 5.1E-40 1.7E-44 340.0 32.0 351 16-483 62-417 (427)
3 3kki_A CAI-1 autoinducer synth 100.0 6E-40 2E-44 337.5 28.9 346 16-482 57-405 (409)
4 1fc4_A 2-amino-3-ketobutyrate 100.0 3.6E-38 1.2E-42 323.2 33.1 353 16-483 43-399 (401)
5 2bwn_A 5-aminolevulinate synth 100.0 3.5E-38 1.2E-42 323.4 32.8 354 16-481 44-400 (401)
6 1bs0_A Protein (8-amino-7-oxon 100.0 8.3E-38 2.8E-42 318.6 31.7 345 15-477 36-383 (384)
7 3a2b_A Serine palmitoyltransfe 100.0 1.9E-37 6.5E-42 317.6 33.5 352 15-483 40-394 (398)
8 3nra_A Aspartate aminotransfer 100.0 1.3E-32 4.6E-37 282.1 28.7 348 19-481 40-405 (407)
9 1t3i_A Probable cysteine desul 100.0 4.2E-31 1.4E-35 271.9 30.0 344 17-483 26-415 (420)
10 3dzz_A Putative pyridoxal 5'-p 100.0 6.6E-31 2.3E-35 267.9 30.9 348 16-482 25-390 (391)
11 2z61_A Probable aspartate amin 100.0 6.3E-31 2.2E-35 266.4 29.7 333 16-479 27-369 (370)
12 2x5d_A Probable aminotransfera 100.0 1.1E-30 3.7E-35 268.7 31.8 349 15-483 34-400 (412)
13 1kmj_A Selenocysteine lyase; p 100.0 6.2E-31 2.1E-35 269.2 29.1 338 20-481 26-405 (406)
14 3l8a_A METC, putative aminotra 100.0 8E-31 2.8E-35 270.5 28.6 344 17-479 60-420 (421)
15 3ly1_A Putative histidinol-pho 100.0 2.2E-30 7.7E-35 260.6 30.4 330 15-480 13-351 (354)
16 3h14_A Aminotransferase, class 100.0 2.5E-30 8.4E-35 264.0 30.9 342 14-482 27-383 (391)
17 1gd9_A Aspartate aminotransfer 100.0 4.1E-30 1.4E-34 262.1 32.3 345 18-482 26-387 (389)
18 3fdb_A Beta C-S lyase, putativ 100.0 1.1E-30 3.8E-35 265.0 27.2 339 16-481 21-376 (377)
19 3kax_A Aminotransferase, class 100.0 3.8E-30 1.3E-34 261.6 29.9 342 17-478 23-382 (383)
20 2dou_A Probable N-succinyldiam 100.0 1.9E-30 6.5E-35 263.5 27.6 336 15-478 22-375 (376)
21 3aow_A Putative uncharacterize 100.0 3.9E-30 1.3E-34 267.4 30.2 348 17-481 75-445 (448)
22 1j32_A Aspartate aminotransfer 100.0 4.7E-30 1.6E-34 261.6 30.2 345 15-481 27-387 (388)
23 3get_A Histidinol-phosphate am 100.0 4E-30 1.4E-34 259.9 29.0 323 18-478 30-364 (365)
24 2o1b_A Aminotransferase, class 100.0 1.6E-30 5.5E-35 266.8 25.1 345 16-481 45-403 (404)
25 1eg5_A Aminotransferase; PLP-d 100.0 6.2E-30 2.1E-34 259.8 29.1 342 19-483 3-378 (384)
26 3dyd_A Tyrosine aminotransfera 100.0 9.6E-30 3.3E-34 262.9 30.7 341 15-482 51-425 (427)
27 2zc0_A Alanine glyoxylate tran 100.0 1.3E-29 4.3E-34 260.1 30.5 348 16-481 32-404 (407)
28 4dq6_A Putative pyridoxal phos 100.0 6.2E-30 2.1E-34 260.7 28.1 339 18-478 32-390 (391)
29 3ei9_A LL-diaminopimelate amin 100.0 3E-30 1E-34 267.1 25.9 351 16-479 54-426 (432)
30 1b5p_A Protein (aspartate amin 100.0 1.7E-29 5.7E-34 257.5 31.1 338 16-479 29-383 (385)
31 2oat_A Ornithine aminotransfer 100.0 1E-29 3.6E-34 263.4 29.7 339 15-480 73-438 (439)
32 2o0r_A RV0858C (N-succinyldiam 100.0 6.5E-30 2.2E-34 262.8 27.9 344 19-481 26-396 (411)
33 3jtx_A Aminotransferase; NP_28 100.0 1.2E-29 4E-34 259.3 29.5 340 15-478 27-395 (396)
34 3g0t_A Putative aminotransfera 100.0 1.7E-29 5.9E-34 261.6 30.8 346 16-480 42-436 (437)
35 1yiz_A Kynurenine aminotransfe 100.0 1E-29 3.4E-34 262.9 29.0 353 18-479 37-427 (429)
36 3ffh_A Histidinol-phosphate am 100.0 1.4E-29 4.9E-34 255.6 29.3 322 17-477 31-362 (363)
37 3nx3_A Acoat, acetylornithine 100.0 1.1E-29 3.7E-34 259.7 28.6 337 15-480 33-394 (395)
38 3ezs_A Aminotransferase ASPB; 100.0 7.1E-30 2.4E-34 259.1 26.9 335 15-480 21-374 (376)
39 3ruy_A Ornithine aminotransfer 100.0 4.4E-30 1.5E-34 262.2 25.4 334 15-478 33-391 (392)
40 1o4s_A Aspartate aminotransfer 100.0 1.6E-29 5.3E-34 258.1 29.0 336 16-479 39-387 (389)
41 3piu_A 1-aminocyclopropane-1-c 100.0 8E-30 2.7E-34 264.1 27.1 307 63-482 89-433 (435)
42 1xi9_A Putative transaminase; 100.0 1.4E-29 4.8E-34 259.9 28.5 345 13-481 33-403 (406)
43 2gb3_A Aspartate aminotransfer 100.0 2.3E-29 7.8E-34 258.6 29.9 342 14-482 39-403 (409)
44 3fvs_A Kynurenine--oxoglutarat 100.0 1.8E-29 6E-34 260.3 28.9 357 17-480 27-421 (422)
45 3b46_A Aminotransferase BNA3; 100.0 1.2E-29 4.2E-34 263.7 27.9 354 16-476 55-442 (447)
46 3hmu_A Aminotransferase, class 100.0 1.8E-29 6E-34 263.8 29.2 345 15-481 52-452 (472)
47 1u08_A Hypothetical aminotrans 100.0 1.6E-29 5.5E-34 257.5 28.2 338 18-476 30-385 (386)
48 3hdo_A Histidinol-phosphate am 100.0 1.2E-29 4.1E-34 256.1 26.7 324 16-480 24-354 (360)
49 3qgu_A LL-diaminopimelate amin 100.0 5.3E-30 1.8E-34 266.6 24.7 341 16-482 67-441 (449)
50 3dxv_A Alpha-amino-epsilon-cap 100.0 1.4E-29 4.7E-34 262.7 27.6 347 15-482 40-426 (439)
51 3euc_A Histidinol-phosphate am 100.0 2.5E-29 8.4E-34 254.3 28.8 323 18-479 30-366 (367)
52 3tfu_A Adenosylmethionine-8-am 100.0 1.3E-29 4.3E-34 263.9 27.2 345 16-482 71-454 (457)
53 1vp4_A Aminotransferase, putat 100.0 1.2E-29 4.1E-34 262.0 26.5 349 17-482 42-419 (425)
54 1z7d_A Ornithine aminotransfer 100.0 3.4E-29 1.1E-33 259.2 29.4 341 15-482 62-430 (433)
55 1c7n_A Cystalysin; transferase 100.0 6.4E-29 2.2E-33 254.2 31.2 345 19-482 32-394 (399)
56 2ord_A Acoat, acetylornithine 100.0 8.5E-30 2.9E-34 260.6 24.6 334 16-480 38-396 (397)
57 1v2d_A Glutamine aminotransfer 100.0 1.8E-29 6E-34 256.8 26.7 334 19-483 26-373 (381)
58 2dr1_A PH1308 protein, 386AA l 100.0 7.9E-29 2.7E-33 252.0 31.4 331 18-482 20-380 (386)
59 3ftb_A Histidinol-phosphate am 100.0 6.5E-29 2.2E-33 250.4 29.6 324 16-480 24-360 (361)
60 2pb2_A Acetylornithine/succiny 100.0 1.4E-29 4.7E-34 261.2 24.7 337 15-481 54-418 (420)
61 3i5t_A Aminotransferase; pyrid 100.0 6.6E-29 2.3E-33 259.9 29.8 347 15-482 51-455 (476)
62 3gju_A Putative aminotransfera 100.0 1.2E-28 4E-33 257.2 31.6 348 15-481 48-456 (460)
63 4ao9_A Beta-phenylalanine amin 100.0 2.8E-29 9.7E-34 258.0 26.2 330 16-482 85-447 (454)
64 3e2y_A Kynurenine-oxoglutarate 100.0 3.2E-29 1.1E-33 257.3 26.4 352 16-476 21-408 (410)
65 3zrp_A Serine-pyruvate aminotr 100.0 4.9E-29 1.7E-33 253.2 27.2 319 30-483 13-365 (384)
66 3i4j_A Aminotransferase, class 100.0 1.7E-28 5.6E-33 253.9 31.4 354 15-481 26-428 (430)
67 1d2f_A MALY protein; aminotran 100.0 3E-28 1E-32 248.4 32.7 340 19-481 29-389 (390)
68 4eb5_A Probable cysteine desul 100.0 1.9E-29 6.6E-34 256.1 23.3 335 20-482 3-374 (382)
69 3cai_A Possible aminotransfera 100.0 8.2E-29 2.8E-33 253.9 28.1 338 17-476 26-404 (406)
70 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 1.7E-30 5.8E-35 263.0 15.2 336 19-481 10-370 (371)
71 3nnk_A Ureidoglycine-glyoxylat 100.0 1.6E-28 5.5E-33 251.9 29.6 323 30-483 24-392 (411)
72 1elu_A L-cysteine/L-cystine C- 100.0 1.1E-28 3.8E-33 251.2 28.0 316 31-476 29-387 (390)
73 3op7_A Aminotransferase class 100.0 7.9E-29 2.7E-33 251.4 26.7 299 60-482 63-372 (375)
74 2zyj_A Alpha-aminodipate amino 100.0 5.9E-29 2E-33 254.4 25.9 341 17-481 31-393 (397)
75 1m32_A 2-aminoethylphosphonate 100.0 7.8E-29 2.7E-33 249.9 25.8 330 20-481 5-365 (366)
76 1vjo_A Alanine--glyoxylate ami 100.0 7E-29 2.4E-33 253.3 25.5 328 18-478 34-392 (393)
77 3cq5_A Histidinol-phosphate am 100.0 8.6E-28 2.9E-32 243.3 32.9 321 20-479 32-366 (369)
78 3n5m_A Adenosylmethionine-8-am 100.0 1.3E-28 4.5E-33 256.3 27.6 356 15-480 46-451 (452)
79 2z9v_A Aspartate aminotransfer 100.0 3.2E-28 1.1E-32 248.2 29.9 335 18-484 9-374 (392)
80 3isl_A Purine catabolism prote 100.0 2.4E-28 8.3E-33 251.0 29.0 303 59-484 43-393 (416)
81 1iug_A Putative aspartate amin 100.0 1.4E-28 4.7E-33 247.0 26.4 317 27-481 9-348 (352)
82 1lc5_A COBD, L-threonine-O-3-p 100.0 1.4E-28 4.9E-33 248.5 26.6 327 16-481 22-360 (364)
83 3lvm_A Cysteine desulfurase; s 100.0 5E-29 1.7E-33 256.9 23.6 342 16-482 21-400 (423)
84 4a6r_A Omega transaminase; tra 100.0 3.1E-28 1.1E-32 254.0 29.4 343 16-481 48-449 (459)
85 3ele_A Amino transferase; RER0 100.0 1.6E-28 5.3E-33 251.2 26.5 337 17-482 34-397 (398)
86 4e3q_A Pyruvate transaminase; 100.0 1.6E-28 5.6E-33 254.3 26.7 369 16-481 65-468 (473)
87 4hvk_A Probable cysteine desul 100.0 1.1E-28 3.8E-33 250.1 25.0 333 20-482 3-374 (382)
88 4atq_A 4-aminobutyrate transam 100.0 1.6E-28 5.5E-33 253.5 26.1 207 257-481 224-455 (456)
89 3kgw_A Alanine-glyoxylate amin 100.0 4.5E-28 1.6E-32 246.8 29.1 331 21-483 25-390 (393)
90 1bw0_A TAT, protein (tyrosine 100.0 1.5E-28 5.2E-33 252.9 25.7 343 18-482 33-414 (416)
91 4adb_A Succinylornithine trans 100.0 3E-28 1E-32 249.7 26.9 338 15-482 36-401 (406)
92 1iay_A ACC synthase 2, 1-amino 100.0 1.5E-27 5.1E-32 246.5 31.6 349 19-481 37-427 (428)
93 2r2n_A Kynurenine/alpha-aminoa 100.0 2E-27 6.7E-32 245.5 32.4 308 56-480 78-423 (425)
94 2huf_A Alanine glyoxylate amin 100.0 4.9E-28 1.7E-32 246.9 27.5 336 16-483 17-385 (393)
95 3oks_A 4-aminobutyrate transam 100.0 5E-28 1.7E-32 251.7 27.9 344 16-480 59-450 (451)
96 3p1t_A Putative histidinol-pho 100.0 3E-27 1E-31 235.9 32.1 314 16-479 14-335 (337)
97 3dod_A Adenosylmethionine-8-am 100.0 5.7E-28 2E-32 251.2 27.6 357 16-481 42-443 (448)
98 3lws_A Aromatic amino acid bet 100.0 3.4E-29 1.2E-33 252.3 17.0 331 19-478 4-356 (357)
99 3f9t_A TDC, L-tyrosine decarbo 100.0 7.9E-28 2.7E-32 245.1 27.2 325 31-479 43-396 (397)
100 3tcm_A Alanine aminotransferas 100.0 2E-27 6.8E-32 250.3 30.0 337 32-481 109-494 (500)
101 4ffc_A 4-aminobutyrate aminotr 100.0 8.5E-28 2.9E-32 250.1 26.8 346 16-482 62-450 (453)
102 1vef_A Acetylornithine/acetyl- 100.0 1.1E-27 3.9E-32 244.6 26.5 333 16-478 43-394 (395)
103 2eh6_A Acoat, acetylornithine 100.0 6.7E-28 2.3E-32 244.4 23.9 330 15-477 25-374 (375)
104 1s0a_A Adenosylmethionine-8-am 100.0 3.2E-27 1.1E-31 244.1 29.3 346 16-481 41-424 (429)
105 3f0h_A Aminotransferase; RER07 100.0 8E-28 2.7E-32 243.8 24.3 328 18-480 18-373 (376)
106 3asa_A LL-diaminopimelate amin 100.0 1.4E-27 4.6E-32 244.6 25.8 339 16-481 31-393 (400)
107 2epj_A Glutamate-1-semialdehyd 100.0 1.6E-27 5.4E-32 246.8 26.5 346 15-481 53-431 (434)
108 1sff_A 4-aminobutyrate aminotr 100.0 2.5E-27 8.5E-32 244.5 27.8 343 16-481 39-424 (426)
109 1qz9_A Kynureninase; kynurenin 100.0 1.8E-27 6.3E-32 244.6 26.6 333 16-482 27-403 (416)
110 3fkd_A L-threonine-O-3-phospha 100.0 2.9E-27 9.8E-32 237.6 27.4 320 16-481 13-342 (350)
111 3rq1_A Aminotransferase class 100.0 5.2E-28 1.8E-32 249.1 22.4 342 17-482 37-416 (418)
112 2ch1_A 3-hydroxykynurenine tra 100.0 2.4E-27 8.3E-32 242.0 26.6 301 60-483 51-385 (396)
113 2x5f_A Aspartate_tyrosine_phen 100.0 2.7E-28 9.4E-33 252.2 19.5 337 18-481 47-429 (430)
114 3l44_A Glutamate-1-semialdehyd 100.0 2.4E-27 8.3E-32 245.4 26.5 346 15-481 52-430 (434)
115 2yrr_A Aminotransferase, class 100.0 1.2E-27 4.2E-32 239.8 22.7 324 23-480 4-352 (353)
116 1jg8_A L-ALLO-threonine aldola 100.0 3E-27 1E-31 237.0 24.5 328 19-480 4-345 (347)
117 1zod_A DGD, 2,2-dialkylglycine 100.0 5.6E-27 1.9E-31 242.5 27.3 348 16-481 41-432 (433)
118 2vi8_A Serine hydroxymethyltra 100.0 2.2E-27 7.5E-32 243.1 23.8 345 17-482 23-388 (405)
119 3a8u_X Omega-amino acid--pyruv 100.0 6E-27 2.1E-31 243.5 27.3 360 16-481 48-447 (449)
120 3t18_A Aminotransferase class 100.0 1.2E-27 4E-32 246.1 21.4 338 17-481 36-410 (413)
121 2eo5_A 419AA long hypothetical 100.0 1.1E-26 3.7E-31 239.4 28.4 343 15-481 39-418 (419)
122 2cjg_A L-lysine-epsilon aminot 100.0 2.6E-27 8.7E-32 246.3 23.6 343 15-481 51-448 (449)
123 3if2_A Aminotransferase; YP_26 100.0 6.2E-27 2.1E-31 243.0 26.5 228 244-481 192-440 (444)
124 1fg7_A Histidinol phosphate am 100.0 9.1E-27 3.1E-31 234.7 26.4 282 62-476 60-353 (356)
125 2dkj_A Serine hydroxymethyltra 100.0 3.5E-27 1.2E-31 241.8 23.6 342 18-480 23-387 (407)
126 3ihj_A Alanine aminotransferas 100.0 1.8E-26 6.1E-31 242.7 28.6 337 33-481 105-493 (498)
127 3ffr_A Phosphoserine aminotran 100.0 1.4E-26 4.9E-31 233.0 26.7 325 20-478 5-361 (362)
128 3vax_A Putative uncharacterize 100.0 5.8E-28 2E-32 247.0 16.5 340 16-480 19-399 (400)
129 3g7q_A Valine-pyruvate aminotr 100.0 1.7E-26 5.6E-31 237.6 27.3 216 257-481 178-413 (417)
130 1ohv_A 4-aminobutyrate aminotr 100.0 2E-27 6.8E-32 248.4 20.6 362 15-481 60-471 (472)
131 2rfv_A Methionine gamma-lyase; 100.0 7.3E-27 2.5E-31 239.1 24.2 321 27-477 31-396 (398)
132 3k28_A Glutamate-1-semialdehyd 100.0 1.1E-26 3.6E-31 240.2 25.6 345 15-481 50-427 (429)
133 1v72_A Aldolase; PLP-dependent 100.0 6.6E-27 2.2E-31 235.1 22.8 330 18-480 7-352 (356)
134 3fq8_A Glutamate-1-semialdehyd 99.9 2.9E-26 1E-30 236.8 27.5 345 15-480 49-426 (427)
135 4e77_A Glutamate-1-semialdehyd 99.9 3.6E-26 1.2E-30 236.2 27.1 346 15-480 50-428 (429)
136 1e5e_A MGL, methionine gamma-l 99.9 5.3E-26 1.8E-30 233.0 27.6 317 25-481 27-395 (404)
137 2e7u_A Glutamate-1-semialdehyd 99.9 2.2E-26 7.4E-31 237.5 24.6 341 15-477 49-423 (424)
138 3e9k_A Kynureninase; kynurenin 99.9 1.5E-26 5.1E-31 241.7 22.8 325 31-481 80-461 (465)
139 2bkw_A Alanine-glyoxylate amin 99.9 2.8E-26 9.4E-31 233.1 24.1 221 244-481 125-384 (385)
140 1qgn_A Protein (cystathionine 99.9 1.1E-25 3.7E-30 232.3 28.1 287 59-480 113-444 (445)
141 2cy8_A D-phgat, D-phenylglycin 99.9 4.5E-26 1.5E-30 237.2 25.4 338 16-482 55-436 (453)
142 3f6t_A Aspartate aminotransfer 99.9 1.8E-26 6.1E-31 244.6 22.6 339 20-482 105-526 (533)
143 1uu1_A Histidinol-phosphate am 99.9 3.2E-26 1.1E-30 228.6 23.1 305 19-477 20-334 (335)
144 3b1d_A Betac-S lyase; HET: PLP 99.9 2.7E-29 9.1E-34 256.6 0.0 342 19-479 32-391 (392)
145 1ajs_A Aspartate aminotransfer 99.9 3.3E-26 1.1E-30 235.1 22.5 335 16-481 28-411 (412)
146 3gbx_A Serine hydroxymethyltra 99.9 5.6E-26 1.9E-30 233.6 24.3 336 21-481 34-396 (420)
147 2yky_A Beta-transaminase; tran 99.9 3.2E-29 1.1E-33 259.3 0.0 327 15-481 97-460 (465)
148 1yaa_A Aspartate aminotransfer 99.9 2.5E-26 8.5E-31 236.1 21.5 332 16-481 27-411 (412)
149 3mad_A Sphingosine-1-phosphate 99.9 1.2E-25 4.2E-30 237.7 27.4 332 30-482 108-470 (514)
150 1svv_A Threonine aldolase; str 99.9 3.5E-26 1.2E-30 229.9 22.0 332 16-481 11-358 (359)
151 4f4e_A Aromatic-amino-acid ami 99.9 7.1E-26 2.4E-30 233.4 23.1 332 17-478 48-419 (420)
152 1gc0_A Methionine gamma-lyase; 99.9 1.9E-25 6.4E-30 228.6 25.3 287 58-477 63-397 (398)
153 2q7w_A Aspartate aminotransfer 99.9 4E-26 1.4E-30 233.0 20.1 330 16-477 24-395 (396)
154 7aat_A Aspartate aminotransfer 99.9 2.9E-26 9.8E-31 234.7 18.9 333 18-478 28-400 (401)
155 3ecd_A Serine hydroxymethyltra 99.9 5.1E-25 1.7E-29 226.8 28.4 337 20-481 34-397 (425)
156 3n0l_A Serine hydroxymethyltra 99.9 4.1E-25 1.4E-29 227.0 27.0 338 19-481 26-389 (417)
157 3ppl_A Aspartate aminotransfer 99.9 1.1E-25 3.8E-30 232.4 22.3 308 57-481 75-420 (427)
158 3a9z_A Selenocysteine lyase; P 99.9 2E-25 6.8E-30 230.7 23.3 358 16-482 17-429 (432)
159 3meb_A Aspartate aminotransfer 99.9 3E-25 1E-29 230.6 24.6 337 16-482 46-445 (448)
160 1pff_A Methionine gamma-lyase; 99.9 8.8E-26 3E-30 224.9 19.6 280 64-477 2-330 (331)
161 3qhx_A Cystathionine gamma-syn 99.9 6.5E-25 2.2E-29 224.0 26.4 286 58-474 64-391 (392)
162 3ndn_A O-succinylhomoserine su 99.9 5.3E-25 1.8E-29 225.9 25.7 285 58-477 79-412 (414)
163 4eu1_A Mitochondrial aspartate 99.9 1.2E-25 4E-30 230.8 20.6 329 16-478 39-408 (409)
164 3fsl_A Aromatic-amino-acid ami 99.9 1.3E-25 4.3E-30 229.4 20.5 333 17-477 25-396 (397)
165 2ay1_A Aroat, aromatic amino a 99.9 5.1E-26 1.8E-30 232.2 17.6 330 16-477 24-392 (394)
166 3h7f_A Serine hydroxymethyltra 99.9 5.4E-25 1.8E-29 228.6 25.0 336 20-481 47-414 (447)
167 2a7v_A Serine hydroxymethyltra 99.9 4.2E-25 1.4E-29 229.7 23.5 336 24-480 61-440 (490)
168 3ez1_A Aminotransferase MOCR f 99.9 6.9E-25 2.3E-29 226.1 24.9 342 19-481 26-415 (423)
169 1cs1_A CGS, protein (cystathio 99.9 2.4E-24 8.1E-29 219.4 28.6 286 59-477 51-383 (386)
170 2c0r_A PSAT, phosphoserine ami 99.9 1.4E-25 4.9E-30 226.3 19.0 327 19-481 5-361 (362)
171 3pj0_A LMO0305 protein; struct 99.9 1E-25 3.4E-30 227.0 17.5 313 31-477 28-358 (359)
172 1mdo_A ARNB aminotransferase; 99.9 1.6E-24 5.6E-29 220.8 26.7 323 19-481 9-386 (393)
173 1b9h_A AHBA synthase, protein 99.9 9.4E-25 3.2E-29 222.4 24.7 315 31-480 16-387 (388)
174 2fq6_A Cystathionine beta-lyas 99.9 8.3E-25 2.8E-29 224.3 23.8 288 58-476 80-413 (415)
175 1ax4_A Tryptophanase; tryptoph 99.9 1E-24 3.6E-29 227.7 24.9 358 16-483 41-443 (467)
176 1n8p_A Cystathionine gamma-lya 99.9 1.3E-24 4.3E-29 221.9 24.6 286 59-477 54-391 (393)
177 3d6k_A Putative aminotransfera 99.9 6.4E-25 2.2E-29 226.4 22.6 338 20-481 34-418 (422)
178 1w23_A Phosphoserine aminotran 99.9 1.4E-25 5E-30 225.8 17.4 328 19-480 3-359 (360)
179 2aeu_A Hypothetical protein MJ 99.9 5.2E-25 1.8E-29 223.3 21.1 324 14-482 23-372 (374)
180 3acz_A Methionine gamma-lyase; 99.9 3.7E-24 1.3E-28 218.2 27.5 282 59-474 58-386 (389)
181 3frk_A QDTB; aminotransferase, 99.9 8.3E-25 2.8E-29 221.7 22.3 309 31-479 16-366 (373)
182 3ke3_A Putative serine-pyruvat 99.9 1.4E-24 4.9E-29 220.6 23.7 224 243-481 122-376 (379)
183 1wyu_B Glycine dehydrogenase s 99.9 1.8E-24 6.2E-29 226.3 25.1 327 30-480 78-440 (474)
184 3uwc_A Nucleotide-sugar aminot 99.9 1.5E-24 5.1E-29 219.6 23.4 321 19-481 7-371 (374)
185 2c81_A Glutamine-2-deoxy-scyll 99.9 1.1E-23 3.6E-28 216.9 29.0 321 31-482 15-415 (418)
186 3mc6_A Sphingosine-1-phosphate 99.9 2.8E-24 9.7E-29 226.3 25.2 335 30-483 76-439 (497)
187 2cb1_A O-acetyl homoserine sul 99.9 1.4E-23 4.7E-28 215.7 29.7 282 59-476 55-411 (412)
188 2oga_A Transaminase; PLP-depen 99.9 1.6E-24 5.5E-29 221.7 22.5 327 18-482 30-397 (399)
189 3hbx_A GAD 1, glutamate decarb 99.9 1.8E-24 6.3E-29 227.6 23.5 334 31-482 69-445 (502)
190 1rv3_A Serine hydroxymethyltra 99.9 1.9E-24 6.5E-29 226.5 23.4 342 19-480 45-430 (483)
191 2fnu_A Aminotransferase; prote 99.9 1.5E-23 5.1E-28 212.1 28.0 313 31-482 12-373 (375)
192 3bwn_A AT1G70560, L-tryptophan 99.9 2.8E-25 9.4E-30 226.7 14.4 276 63-480 71-386 (391)
193 3nyt_A Aminotransferase WBPE; 99.9 3.1E-24 1.1E-28 217.0 21.9 307 31-477 15-360 (367)
194 3ju7_A Putative PLP-dependent 99.9 2E-23 7E-28 211.7 27.5 329 21-480 5-374 (377)
195 2oqx_A Tryptophanase; lyase, p 99.9 1.2E-24 4.2E-29 227.1 18.9 354 16-482 39-443 (467)
196 3cog_A Cystathionine gamma-lya 99.9 3.7E-24 1.3E-28 219.1 21.7 284 60-477 67-398 (403)
197 3dr4_A Putative perosamine syn 99.9 4.2E-24 1.4E-28 217.8 21.7 312 31-478 35-390 (391)
198 3ri6_A O-acetylhomoserine sulf 99.9 7.2E-24 2.5E-28 218.0 23.4 284 59-477 81-428 (430)
199 1ibj_A CBL, cystathionine beta 99.9 4.4E-24 1.5E-28 221.9 21.9 287 59-481 132-462 (464)
200 4a0g_A Adenosylmethionine-8-am 99.9 5E-25 1.7E-29 242.8 14.6 380 19-482 381-829 (831)
201 2ez2_A Beta-tyrosinase, tyrosi 99.9 7.2E-23 2.4E-27 213.1 29.6 319 58-482 73-432 (456)
202 2dgk_A GAD-beta, GADB, glutama 99.9 2E-23 6.9E-28 217.1 25.2 333 31-482 55-435 (452)
203 3nmy_A Xometc, cystathionine g 99.9 2.1E-23 7.1E-28 213.0 23.8 286 58-474 65-396 (400)
204 1o69_A Aminotransferase; struc 99.9 1.4E-22 4.8E-27 206.9 29.5 317 31-480 11-386 (394)
205 2fyf_A PSAT, phosphoserine ami 99.9 1.7E-23 5.9E-28 213.9 22.4 206 257-480 163-397 (398)
206 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 2E-22 6.7E-27 208.7 28.4 327 16-479 29-434 (437)
207 3k7y_A Aspartate aminotransfer 99.9 3.2E-23 1.1E-27 211.7 22.0 332 18-480 29-404 (405)
208 2ctz_A O-acetyl-L-homoserine s 99.9 6.3E-23 2.2E-27 211.3 24.3 287 59-478 57-420 (421)
209 2po3_A 4-dehydrase; external a 99.9 3.7E-22 1.3E-26 205.8 29.2 318 26-481 26-386 (424)
210 2hox_A ALLIIN lyase 1; cystein 99.9 1.9E-23 6.6E-28 215.4 18.0 319 19-480 57-424 (427)
211 2qma_A Diaminobutyrate-pyruvat 99.9 2.8E-22 9.5E-27 211.0 26.5 308 59-481 139-496 (497)
212 2zy4_A L-aspartate beta-decarb 99.9 1.1E-22 3.6E-27 215.8 23.3 223 251-482 237-523 (546)
213 3b8x_A WBDK, pyridoxamine 5-ph 99.9 4.7E-22 1.6E-26 202.7 27.1 309 31-474 14-389 (390)
214 3vp6_A Glutamate decarboxylase 99.9 1.8E-22 6.2E-27 212.7 24.1 311 58-481 133-505 (511)
215 2z67_A O-phosphoseryl-tRNA(SEC 99.9 1.5E-22 5E-27 210.7 21.6 301 59-478 132-455 (456)
216 3jzl_A Putative cystathionine 99.9 1.6E-22 5.4E-27 206.4 21.3 255 60-436 59-339 (409)
217 3hvy_A Cystathionine beta-lyas 99.9 2.9E-22 9.8E-27 205.2 22.9 256 61-435 75-355 (427)
218 3i16_A Aluminum resistance pro 99.9 2.9E-22 9.9E-27 205.2 21.9 256 61-435 74-355 (427)
219 3k40_A Aromatic-L-amino-acid d 99.9 1.5E-21 5.2E-26 203.9 25.2 305 59-481 112-471 (475)
220 1c4k_A Protein (ornithine deca 99.9 7.3E-22 2.5E-26 214.3 23.6 310 59-482 172-567 (730)
221 2x3l_A ORN/Lys/Arg decarboxyla 99.9 1.3E-22 4.3E-27 210.4 16.9 291 59-482 56-354 (446)
222 2okj_A Glutamate decarboxylase 99.9 1E-20 3.4E-25 199.5 30.2 306 59-481 131-502 (504)
223 1wyu_A Glycine dehydrogenase ( 99.9 9.4E-22 3.2E-26 203.7 21.6 205 257-478 194-437 (438)
224 4e1o_A HDC, histidine decarbox 99.9 1.8E-21 6.2E-26 203.8 23.8 305 58-481 116-478 (481)
225 3e77_A Phosphoserine aminotran 99.9 1.9E-22 6.5E-27 202.8 15.4 323 28-481 22-375 (377)
226 2jis_A Cysteine sulfinic acid 99.9 9.3E-21 3.2E-25 200.2 26.4 308 58-480 146-514 (515)
227 4h51_A Aspartate aminotransfer 99.9 6.7E-21 2.3E-25 194.8 24.3 340 16-482 42-418 (420)
228 3qm2_A Phosphoserine aminotran 99.9 1.9E-21 6.6E-26 196.6 19.3 206 253-480 160-384 (386)
229 3n75_A LDC, lysine decarboxyla 99.9 2.3E-21 7.8E-26 208.6 20.8 312 59-482 194-561 (715)
230 1js3_A DDC;, DOPA decarboxylas 99.9 1.5E-20 5.1E-25 197.3 25.7 310 58-482 111-475 (486)
231 3m5u_A Phosphoserine aminotran 99.9 6.3E-21 2.2E-25 191.1 19.9 202 257-480 138-359 (361)
232 3ht4_A Aluminum resistance pro 99.9 2.2E-20 7.6E-25 192.1 22.5 254 60-435 65-344 (431)
233 2vyc_A Biodegradative arginine 99.9 2E-20 6.9E-25 204.8 23.4 314 59-481 204-605 (755)
234 3ou5_A Serine hydroxymethyltra 99.8 1.2E-17 3.9E-22 166.8 24.7 333 31-480 67-440 (490)
235 3hl2_A O-phosphoseryl-tRNA(SEC 99.7 3E-16 1E-20 157.3 18.7 296 74-483 130-463 (501)
236 3bc8_A O-phosphoseryl-tRNA(SEC 99.7 5E-15 1.7E-19 150.6 26.1 309 60-481 98-443 (450)
237 3nx3_A Acoat, acetylornithine 94.4 0.19 6.4E-06 49.9 10.5 97 74-187 123-223 (395)
238 3i5t_A Aminotransferase; pyrid 93.0 0.6 2.1E-05 47.7 11.7 55 133-187 207-265 (476)
239 4ao9_A Beta-phenylalanine amin 93.0 0.68 2.3E-05 47.0 11.8 98 69-187 163-264 (454)
240 3hmu_A Aminotransferase, class 92.8 0.74 2.5E-05 47.0 11.9 55 133-187 209-267 (472)
241 4a6r_A Omega transaminase; tra 92.7 0.81 2.8E-05 46.4 12.0 55 133-187 205-263 (459)
242 3gju_A Putative aminotransfera 92.5 0.88 3E-05 46.2 12.1 55 133-187 207-265 (460)
243 3lvm_A Cysteine desulfurase; s 92.1 0.64 2.2E-05 46.3 10.3 56 132-191 152-207 (423)
244 4adb_A Succinylornithine trans 91.7 0.72 2.5E-05 45.6 10.1 62 122-187 162-227 (406)
245 3dod_A Adenosylmethionine-8-am 91.4 0.68 2.3E-05 46.8 9.6 56 131-187 195-255 (448)
246 3vax_A Putative uncharacterize 90.7 0.18 6E-06 50.0 4.3 55 132-190 148-202 (400)
247 4hvk_A Probable cysteine desul 90.6 0.22 7.6E-06 48.7 4.9 54 132-190 127-180 (382)
248 3n5m_A Adenosylmethionine-8-am 90.5 1.5 5.3E-05 44.1 11.3 54 133-187 201-259 (452)
249 2z9v_A Aspartate aminotransfer 90.4 0.42 1.4E-05 47.1 6.7 57 131-189 120-176 (392)
250 1eg5_A Aminotransferase; PLP-d 89.6 0.32 1.1E-05 47.6 5.1 54 132-189 128-183 (384)
251 1kmj_A Selenocysteine lyase; p 88.9 0.42 1.4E-05 47.2 5.4 54 132-189 153-206 (406)
252 3tfu_A Adenosylmethionine-8-am 87.3 1.7 5.9E-05 44.0 9.0 56 131-187 218-278 (457)
253 1t3i_A Probable cysteine desul 87.0 0.54 1.8E-05 46.7 4.9 55 132-190 158-212 (420)
254 4eb5_A Probable cysteine desul 86.9 0.55 1.9E-05 45.9 4.8 53 132-189 127-179 (382)
255 3ht4_A Aluminum resistance pro 86.6 0.46 1.6E-05 48.0 4.1 69 119-191 136-215 (431)
256 2bwn_A 5-aminolevulinate synth 86.2 0.68 2.3E-05 45.8 5.1 51 147-197 178-228 (401)
257 3oks_A 4-aminobutyrate transam 84.6 4.9 0.00017 40.4 10.8 55 133-187 212-271 (451)
258 2w8t_A SPT, serine palmitoyltr 84.5 0.25 8.5E-06 49.7 0.9 50 148-197 195-244 (427)
259 3bc8_A O-phosphoseryl-tRNA(SEC 82.3 1.1 3.9E-05 45.1 4.7 57 131-187 182-238 (450)
260 3ly1_A Putative histidinol-pho 82.1 1.9 6.4E-05 41.6 6.2 46 197-242 70-121 (354)
261 1zod_A DGD, 2,2-dialkylglycine 82.0 1.1 3.7E-05 44.9 4.5 56 132-187 188-247 (433)
262 3hl2_A O-phosphoseryl-tRNA(SEC 81.6 1.3 4.4E-05 44.8 4.7 56 132-187 201-256 (501)
263 3ffr_A Phosphoserine aminotran 77.7 1.6 5.6E-05 42.0 4.1 53 132-190 121-174 (362)
264 4ffc_A 4-aminobutyrate aminotr 76.7 12 0.00041 37.5 10.4 42 146-187 224-269 (453)
265 3kki_A CAI-1 autoinducer synth 76.4 2.1 7.2E-05 42.4 4.5 47 151-197 190-236 (409)
266 3f0h_A Aminotransferase; RER07 76.2 6.3 0.00022 38.1 7.9 54 132-189 133-186 (376)
267 1iug_A Putative aspartate amin 75.6 1.5 5.1E-05 42.2 3.1 44 146-189 120-165 (352)
268 1o4s_A Aspartate aminotransfer 74.7 17 0.00058 35.3 10.7 56 132-191 163-221 (389)
269 3a9z_A Selenocysteine lyase; P 74.4 2.3 7.9E-05 42.3 4.3 86 100-189 122-227 (432)
270 3ffh_A Histidinol-phosphate am 73.5 6.4 0.00022 37.9 7.2 75 197-299 86-166 (363)
271 1elu_A L-cysteine/L-cystine C- 72.3 4.3 0.00015 39.5 5.6 55 132-190 143-201 (390)
272 1tks_A 3,4-dihydroxy-2-butanon 72.3 7.8 0.00027 34.1 6.5 35 260-294 160-194 (204)
273 1j32_A Aspartate aminotransfer 71.8 25 0.00087 33.9 11.2 56 132-191 152-210 (388)
274 2z67_A O-phosphoseryl-tRNA(SEC 71.3 4 0.00014 41.2 5.2 59 131-189 214-273 (456)
275 1u08_A Hypothetical aminotrans 70.1 29 0.001 33.4 11.1 56 132-191 152-210 (386)
276 3t18_A Aminotransferase class 69.4 27 0.00091 34.1 10.8 56 132-187 162-228 (413)
277 3rq1_A Aminotransferase class 69.3 27 0.00094 34.1 10.9 136 30-187 81-229 (418)
278 1yiz_A Kynurenine aminotransfe 69.2 31 0.0011 33.9 11.3 57 131-191 170-229 (429)
279 1snn_A DHBP synthase, 3,4-dihy 68.5 8.1 0.00028 34.7 5.8 34 260-294 179-212 (227)
280 1jg8_A L-ALLO-threonine aldola 68.2 4.8 0.00016 38.5 4.8 57 132-188 115-177 (347)
281 3a2b_A Serine palmitoyltransfe 66.3 8.8 0.0003 37.5 6.4 46 197-242 105-156 (398)
282 3nyt_A Aminotransferase WBPE; 66.1 13 0.00046 35.7 7.6 53 132-191 112-164 (367)
283 3tcm_A Alanine aminotransferas 64.9 8.9 0.0003 39.1 6.3 47 195-241 157-210 (500)
284 3h14_A Aminotransferase, class 64.4 38 0.0013 32.6 10.7 53 132-191 153-208 (391)
285 3euc_A Histidinol-phosphate am 63.3 15 0.00051 35.2 7.4 75 197-299 87-168 (367)
286 3ihj_A Alanine aminotransferas 62.9 8.8 0.0003 39.2 5.8 47 195-241 153-209 (498)
287 3ele_A Amino transferase; RER0 62.9 37 0.0013 32.8 10.3 56 132-191 161-225 (398)
288 7aat_A Aspartate aminotransfer 62.4 25 0.00084 34.2 8.9 57 132-189 161-220 (401)
289 2cb1_A O-acetyl homoserine sul 62.2 7.2 0.00025 38.6 4.9 64 121-189 119-182 (412)
290 3fq8_A Glutamate-1-semialdehyd 60.1 87 0.003 30.5 12.6 66 123-190 176-245 (427)
291 4atq_A 4-aminobutyrate transam 59.5 1.3E+02 0.0045 30.0 13.7 168 16-187 62-270 (456)
292 3dr4_A Putative perosamine syn 57.9 11 0.00038 36.7 5.3 53 132-191 133-185 (391)
293 1mdo_A ARNB aminotransferase; 57.1 4.6 0.00016 39.4 2.3 53 132-191 116-168 (393)
294 3pj0_A LMO0305 protein; struct 56.2 12 0.00041 35.8 5.1 53 132-189 127-183 (359)
295 2e7j_A SEP-tRNA:Cys-tRNA synth 55.8 17 0.00057 34.9 6.2 45 197-241 71-121 (371)
296 3fdb_A Beta C-S lyase, putativ 55.0 15 0.00052 35.3 5.7 74 196-299 82-161 (377)
297 3hdo_A Histidinol-phosphate am 54.9 15 0.00052 35.2 5.7 44 197-240 84-133 (360)
298 2r2n_A Kynurenine/alpha-aminoa 54.8 12 0.00042 36.9 5.1 46 196-241 109-160 (425)
299 2fnu_A Aminotransferase; prote 54.8 4.4 0.00015 39.1 1.7 53 132-191 110-162 (375)
300 3tqx_A 2-amino-3-ketobutyrate 54.6 10 0.00034 36.9 4.4 50 148-197 176-225 (399)
301 1gd9_A Aspartate aminotransfer 54.3 11 0.00039 36.5 4.7 57 132-192 149-208 (389)
302 3uwc_A Nucleotide-sugar aminot 54.3 4.2 0.00014 39.4 1.5 52 132-190 114-165 (374)
303 1b9h_A AHBA synthase, protein 53.8 5.8 0.0002 38.6 2.5 53 132-191 115-167 (388)
304 3b46_A Aminotransferase BNA3; 53.7 47 0.0016 32.9 9.3 56 132-191 190-248 (447)
305 3get_A Histidinol-phosphate am 53.6 12 0.00042 35.9 4.8 28 197-224 84-113 (365)
306 3cai_A Possible aminotransfera 53.6 9.1 0.00031 37.4 3.9 54 132-189 154-207 (406)
307 2po3_A 4-dehydrase; external a 53.6 6.7 0.00023 38.9 2.9 53 132-191 127-179 (424)
308 3dzz_A Putative pyridoxal 5'-p 52.5 17 0.00057 35.1 5.6 46 196-241 86-137 (391)
309 1v2d_A Glutamine aminotransfer 52.3 13 0.00044 36.0 4.7 57 132-192 141-200 (381)
310 3aow_A Putative uncharacterize 52.1 15 0.0005 36.8 5.2 47 195-241 140-192 (448)
311 2oqx_A Tryptophanase; lyase, p 51.8 13 0.00045 37.2 4.8 57 132-188 168-228 (467)
312 2c81_A Glutamine-2-deoxy-scyll 51.8 6.3 0.00021 39.0 2.3 52 132-190 119-170 (418)
313 1qz9_A Kynureninase; kynurenin 51.7 9.9 0.00034 37.3 3.8 53 133-189 155-207 (416)
314 3fvs_A Kynurenine--oxoglutarat 51.5 48 0.0016 32.3 8.9 56 132-191 163-221 (422)
315 1bs0_A Protein (8-amino-7-oxon 50.4 14 0.00049 35.6 4.7 45 149-193 170-214 (384)
316 2rfv_A Methionine gamma-lyase; 50.0 12 0.00043 36.5 4.2 68 121-192 127-194 (398)
317 1pff_A Methionine gamma-lyase; 50.0 11 0.00038 35.6 3.7 66 122-191 62-128 (331)
318 3jzl_A Putative cystathionine 49.7 10 0.00034 37.7 3.4 67 121-191 132-209 (409)
319 4f4e_A Aromatic-amino-acid ami 49.2 17 0.0006 35.7 5.2 46 197-242 119-172 (420)
320 3hbx_A GAD 1, glutamate decarb 49.0 13 0.00046 37.8 4.4 55 132-190 191-251 (502)
321 3l44_A Glutamate-1-semialdehyd 48.8 1.2E+02 0.0041 29.5 11.4 64 123-187 179-246 (434)
322 2oga_A Transaminase; PLP-depen 48.8 8.5 0.00029 37.8 2.7 52 132-190 140-191 (399)
323 3mc6_A Sphingosine-1-phosphate 48.5 4.5 0.00015 41.2 0.7 54 132-189 195-248 (497)
324 3dxv_A Alpha-amino-epsilon-cap 48.1 13 0.00043 37.0 3.9 56 132-187 186-245 (439)
325 2x5d_A Probable aminotransfera 47.5 86 0.0029 30.4 10.0 56 132-191 161-219 (412)
326 2dr1_A PH1308 protein, 386AA l 47.3 24 0.00083 33.8 5.8 45 197-241 73-125 (386)
327 1d2f_A MALY protein; aminotran 47.2 26 0.00088 33.9 6.0 46 196-241 88-139 (390)
328 1gc0_A Methionine gamma-lyase; 46.4 13 0.00044 36.4 3.7 67 121-191 128-194 (398)
329 3op7_A Aminotransferase class 45.5 20 0.00067 34.5 4.8 56 132-191 143-201 (375)
330 2ctz_A O-acetyl-L-homoserine s 45.4 17 0.00058 36.0 4.4 68 120-191 120-189 (421)
331 1wyu_B Glycine dehydrogenase s 45.4 21 0.0007 36.0 5.1 56 132-192 192-248 (474)
332 1bw0_A TAT, protein (tyrosine 45.4 17 0.00057 35.7 4.3 55 132-190 166-223 (416)
333 3isl_A Purine catabolism prote 45.2 58 0.002 31.5 8.3 70 202-299 69-147 (416)
334 1o69_A Aminotransferase; struc 45.2 31 0.0011 33.5 6.2 45 197-241 49-100 (394)
335 3nra_A Aspartate aminotransfer 45.1 24 0.00081 34.3 5.4 82 196-299 103-190 (407)
336 2fq6_A Cystathionine beta-lyas 45.1 17 0.00058 36.1 4.3 68 120-191 144-213 (415)
337 3k28_A Glutamate-1-semialdehyd 44.9 1.5E+02 0.0053 28.7 11.5 64 123-187 177-244 (429)
338 3kax_A Aminotransferase, class 44.4 27 0.00093 33.5 5.7 46 196-241 83-134 (383)
339 1cs1_A CGS, protein (cystathio 44.1 19 0.00066 34.9 4.5 68 120-191 114-181 (386)
340 3piu_A 1-aminocyclopropane-1-c 43.9 23 0.00078 35.0 5.1 47 196-242 112-165 (435)
341 1fc4_A 2-amino-3-ketobutyrate 43.2 19 0.00064 35.0 4.3 46 148-193 178-223 (401)
342 4dq6_A Putative pyridoxal phos 43.0 24 0.00081 34.0 5.0 47 196-242 91-143 (391)
343 1vp4_A Aminotransferase, putat 43.0 20 0.00068 35.4 4.4 46 196-241 110-161 (425)
344 3fkd_A L-threonine-O-3-phospha 43.0 36 0.0012 32.3 6.2 46 197-242 69-118 (350)
345 3fsl_A Aromatic-amino-acid ami 43.0 28 0.00096 33.6 5.5 46 197-242 97-150 (397)
346 1vjo_A Alanine--glyoxylate ami 42.8 31 0.0011 33.2 5.8 75 197-299 87-170 (393)
347 1c7n_A Cystalysin; transferase 42.6 30 0.001 33.5 5.7 46 196-241 90-141 (399)
348 3k7y_A Aspartate aminotransfer 42.5 20 0.00068 35.4 4.3 73 198-296 100-181 (405)
349 3kts_A Glycerol uptake operon 42.1 1.7E+02 0.0059 25.3 10.4 136 131-294 17-155 (192)
350 3n75_A LDC, lysine decarboxyla 42.1 27 0.00091 37.4 5.4 46 196-241 212-263 (715)
351 1vef_A Acetylornithine/acetyl- 41.4 15 0.0005 35.8 3.1 59 125-187 167-229 (395)
352 3acz_A Methionine gamma-lyase; 41.1 19 0.00066 35.1 4.0 68 120-191 121-188 (389)
353 3ri6_A O-acetylhomoserine sulf 40.9 19 0.00067 35.8 4.0 69 119-191 143-211 (430)
354 3e9k_A Kynureninase; kynurenin 40.8 21 0.00072 35.7 4.3 59 132-191 200-258 (465)
355 3cog_A Cystathionine gamma-lya 40.5 21 0.00073 35.0 4.2 68 120-191 128-196 (403)
356 3p1t_A Putative histidinol-pho 40.4 26 0.0009 32.9 4.7 42 197-239 70-116 (337)
357 3ruy_A Ornithine aminotransfer 40.0 21 0.0007 34.7 3.9 59 125-187 164-226 (392)
358 3zrp_A Serine-pyruvate aminotr 39.6 40 0.0014 32.2 6.0 75 196-299 55-138 (384)
359 2dgk_A GAD-beta, GADB, glutama 39.6 20 0.0007 35.7 3.9 55 132-190 176-236 (452)
360 3l8a_A METC, putative aminotra 39.4 30 0.001 34.0 5.1 79 196-299 120-205 (421)
361 2zc0_A Alanine glyoxylate tran 39.4 25 0.00087 34.1 4.5 46 196-241 99-150 (407)
362 1ohv_A 4-aminobutyrate aminotr 39.4 23 0.0008 35.7 4.3 56 132-187 241-302 (472)
363 3ju7_A Putative PLP-dependent 39.4 79 0.0027 30.5 8.1 40 202-241 60-106 (377)
364 3ftb_A Histidinol-phosphate am 39.4 35 0.0012 32.4 5.5 56 132-192 134-192 (361)
365 3nmy_A Xometc, cystathionine g 38.7 19 0.00065 35.5 3.4 68 120-191 129-196 (400)
366 2zyj_A Alpha-aminodipate amino 38.5 27 0.00093 33.9 4.6 46 196-241 92-143 (397)
367 3frk_A QDTB; aminotransferase, 38.3 19 0.00066 34.6 3.4 53 132-191 113-165 (373)
368 3cq5_A Histidinol-phosphate am 37.6 38 0.0013 32.4 5.5 76 196-299 93-175 (369)
369 1svv_A Threonine aldolase; str 37.4 42 0.0014 31.7 5.7 46 196-241 67-120 (359)
370 1e5e_A MGL, methionine gamma-l 37.3 25 0.00087 34.5 4.1 56 132-191 136-192 (404)
371 2eh6_A Acoat, acetylornithine 37.1 20 0.0007 34.4 3.4 59 125-187 154-216 (375)
372 3lws_A Aromatic amino acid bet 36.7 39 0.0013 32.0 5.3 50 132-187 126-179 (357)
373 2z61_A Probable aspartate amin 36.5 39 0.0013 32.3 5.3 46 196-241 90-141 (370)
374 3f9t_A TDC, L-tyrosine decarbo 36.5 32 0.0011 32.9 4.7 59 132-193 159-217 (397)
375 1b5p_A Protein (aspartate amin 36.2 24 0.00083 34.1 3.8 46 196-241 92-143 (385)
376 1iay_A ACC synthase 2, 1-amino 36.1 37 0.0013 33.3 5.1 47 195-241 108-161 (428)
377 1n8p_A Cystathionine gamma-lya 36.1 21 0.00072 35.0 3.3 67 120-191 116-186 (393)
378 2dou_A Probable N-succinyldiam 36.0 30 0.001 33.2 4.4 45 197-241 89-139 (376)
379 3qhx_A Cystathionine gamma-syn 35.9 27 0.00092 34.1 4.1 68 120-191 128-195 (392)
380 3dyd_A Tyrosine aminotransfera 35.9 20 0.00069 35.4 3.1 55 132-190 180-237 (427)
381 1ibj_A CBL, cystathionine beta 35.8 25 0.00086 35.4 3.9 67 120-190 194-260 (464)
382 3ndn_A O-succinylhomoserine su 35.6 29 0.00098 34.3 4.2 69 119-191 142-210 (414)
383 2x5f_A Aspartate_tyrosine_phen 34.5 39 0.0013 33.2 5.0 44 198-241 116-166 (430)
384 3nnk_A Ureidoglycine-glyoxylat 34.1 54 0.0019 31.6 6.0 74 198-299 67-149 (411)
385 2yrr_A Aminotransferase, class 33.8 25 0.00086 33.1 3.4 56 131-189 111-166 (353)
386 2ch1_A 3-hydroxykynurenine tra 33.7 53 0.0018 31.5 5.8 75 197-299 71-154 (396)
387 3mio_A DHBP synthase, 3,4-dihy 33.7 69 0.0024 28.2 5.7 36 259-294 158-194 (206)
388 2bkw_A Alanine-glyoxylate amin 33.4 67 0.0023 30.5 6.5 75 197-298 61-147 (385)
389 3mad_A Sphingosine-1-phosphate 32.8 29 0.001 35.2 3.8 55 132-190 228-282 (514)
390 4e77_A Glutamate-1-semialdehyd 32.8 30 0.001 34.0 3.9 65 122-187 176-244 (429)
391 1nxi_A Conserved hypothetical 32.7 1.9E+02 0.0066 23.2 9.5 91 391-482 20-112 (132)
392 3nvt_A 3-deoxy-D-arabino-heptu 32.6 2.6E+02 0.009 27.1 10.4 79 111-189 238-323 (385)
393 1m32_A 2-aminoethylphosphonate 32.4 63 0.0022 30.4 6.1 45 197-241 58-110 (366)
394 3kgw_A Alanine-glyoxylate amin 32.3 64 0.0022 30.8 6.2 74 198-299 77-159 (393)
395 3i4j_A Aminotransferase, class 32.3 1.6E+02 0.0054 28.6 9.2 56 132-187 175-235 (430)
396 2oat_A Ornithine aminotransfer 32.3 37 0.0013 33.7 4.4 63 123-189 202-268 (439)
397 3b8x_A WBDK, pyridoxamine 5-ph 31.7 32 0.0011 33.3 3.8 53 132-191 117-169 (390)
398 3a8u_X Omega-amino acid--pyruv 31.6 36 0.0012 33.7 4.2 57 133-189 205-266 (449)
399 3bzy_B ESCU; auto cleavage pro 31.4 27 0.00092 25.9 2.4 22 278-299 29-50 (83)
400 2o1b_A Aminotransferase, class 31.0 43 0.0015 32.6 4.6 46 196-241 110-161 (404)
401 2epj_A Glutamate-1-semialdehyd 30.9 34 0.0012 33.7 3.9 65 124-190 181-249 (434)
402 1qgn_A Protein (cystathionine 30.7 39 0.0013 33.7 4.3 68 120-191 176-244 (445)
403 3jtx_A Aminotransferase; NP_28 29.8 45 0.0015 32.1 4.5 45 197-241 93-148 (396)
404 2cjg_A L-lysine-epsilon aminot 29.8 36 0.0012 33.9 3.9 55 132-187 217-275 (449)
405 1lc5_A COBD, L-threonine-O-3-p 29.7 42 0.0014 32.0 4.2 46 146-191 145-193 (364)
406 3vp6_A Glutamate decarboxylase 28.9 45 0.0015 33.9 4.4 60 132-191 231-292 (511)
407 2gjh_A Designed protein; oblig 28.4 1.2E+02 0.0041 19.6 4.7 29 453-482 3-31 (62)
408 1ax4_A Tryptophanase; tryptoph 28.3 47 0.0016 33.0 4.4 58 131-188 167-228 (467)
409 3ppl_A Aspartate aminotransfer 27.5 44 0.0015 32.8 4.0 46 196-241 96-161 (427)
410 2vyc_A Biodegradative arginine 27.4 55 0.0019 35.3 4.9 45 197-241 223-273 (755)
411 3hvy_A Cystathionine beta-lyas 27.2 38 0.0013 33.7 3.4 69 121-191 148-226 (427)
412 1g57_A DHBP synthase, 3,4-dihy 27.0 1E+02 0.0034 27.4 5.7 35 259-294 167-201 (217)
413 1z7d_A Ornithine aminotransfer 26.7 53 0.0018 32.4 4.4 61 124-187 192-256 (433)
414 3g0t_A Putative aminotransfera 26.1 42 0.0014 32.9 3.6 46 196-241 106-161 (437)
415 3ez1_A Aminotransferase MOCR f 25.7 57 0.0019 31.8 4.4 46 196-241 88-152 (423)
416 2vt1_B Surface presentation of 25.6 39 0.0013 25.7 2.4 22 278-299 29-50 (93)
417 2huf_A Alanine glyoxylate amin 25.6 39 0.0013 32.5 3.2 56 131-189 131-186 (393)
418 2eo5_A 419AA long hypothetical 25.6 54 0.0018 32.1 4.2 56 132-187 195-256 (419)
419 1sff_A 4-aminobutyrate aminotr 25.3 49 0.0017 32.2 3.9 56 132-187 183-243 (426)
420 3t7y_A YOP proteins translocat 25.1 38 0.0013 25.9 2.3 22 278-299 44-65 (97)
421 2e7u_A Glutamate-1-semialdehyd 24.6 59 0.002 31.8 4.3 64 124-190 177-244 (424)
422 3c01_E Surface presentation of 24.4 40 0.0014 25.9 2.3 22 278-299 29-50 (98)
423 3e2y_A Kynurenine-oxoglutarate 24.3 62 0.0021 31.3 4.4 46 196-241 86-137 (410)
424 3meb_A Aspartate aminotransfer 23.9 83 0.0029 31.1 5.3 78 196-299 118-213 (448)
425 4e1o_A HDC, histidine decarbox 23.9 63 0.0022 32.5 4.4 43 148-190 242-284 (481)
426 2x3l_A ORN/Lys/Arg decarboxyla 23.8 60 0.002 32.3 4.2 41 147-188 146-186 (446)
427 2o0r_A RV0858C (N-succinyldiam 23.5 63 0.0022 31.4 4.3 57 131-191 148-207 (411)
428 3bb8_A CDP-4-keto-6-deoxy-D-gl 23.1 50 0.0017 32.5 3.5 53 132-191 147-199 (437)
429 1xi9_A Putative transaminase; 23.0 58 0.002 31.6 3.9 56 132-191 163-221 (406)
430 3k40_A Aromatic-L-amino-acid d 23.0 72 0.0025 32.0 4.6 43 148-190 235-277 (475)
431 1fg7_A Histidinol phosphate am 22.7 52 0.0018 31.3 3.4 53 132-189 136-190 (356)
432 3i16_A Aluminum resistance pro 22.6 48 0.0016 32.9 3.2 68 121-190 147-225 (427)
433 2cy8_A D-phgat, D-phenylglycin 22.1 35 0.0012 33.9 2.0 64 125-190 180-247 (453)
434 1s0a_A Adenosylmethionine-8-am 21.8 59 0.002 31.8 3.7 57 130-187 188-249 (429)
435 1vhx_A Putative holliday junct 21.8 1.6E+02 0.0056 24.2 5.8 53 244-299 43-101 (150)
436 3ghf_A Septum site-determining 21.4 98 0.0034 24.5 4.2 56 234-293 16-78 (120)
437 1v72_A Aldolase; PLP-dependent 21.3 68 0.0023 30.1 3.9 29 197-225 61-91 (356)
438 1qys_A TOP7; alpha-beta, novel 21.2 1.8E+02 0.0062 20.8 5.0 31 451-482 45-75 (106)
439 2gb3_A Aspartate aminotransfer 20.7 87 0.003 30.3 4.6 45 147-191 174-221 (409)
440 2aeu_A Hypothetical protein MJ 20.6 45 0.0015 32.2 2.4 54 132-190 130-185 (374)
441 1c4k_A Protein (ornithine deca 20.5 60 0.002 34.8 3.5 57 132-189 255-322 (730)
442 3asa_A LL-diaminopimelate amin 20.3 53 0.0018 31.8 2.9 42 147-188 163-207 (400)
443 2q7w_A Aspartate aminotransfer 20.2 1E+02 0.0035 29.4 5.0 46 196-241 93-148 (396)
No 1
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=6.4e-40 Score=335.64 Aligned_cols=355 Identities=33% Similarity=0.560 Sum_probs=297.9
Q ss_pred hcCCceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEecccccccc
Q psy16848 14 HKSNRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDS 90 (514)
Q Consensus 14 ~~~g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~ 90 (514)
..+|+.++||+++++++ +|++.+++.+++.+++...+.+++.+|..+...++++++++++|.++.++++||++|+..
T Consensus 39 ~~~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~ 118 (399)
T 3tqx_A 39 KVGEKEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGTDDTILYSSCFDANGG 118 (399)
T ss_dssp EETTEEEEECSSCCTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHT
T ss_pred eeCCeeEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCCCcEEEECchHHHHHH
Confidence 34678899999888876 689999999999998877666777788889999999999999999999999999999999
Q ss_pred chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848 91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 170 (514)
Q Consensus 91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
++.++.+ +||.|+++.++|.++..+++..|.+++.++..|+++|++.+.+....
T Consensus 119 ~l~~~~~--~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~------------------------ 172 (399)
T 3tqx_A 119 LFETLLG--PEDAIISDELNHASIIDGIRLCKAQRYRYKNNAMGDLEAKLKEADEK------------------------ 172 (399)
T ss_dssp THHHHCC--TTCEEEEETTCCHHHHHHHHSCCSEEEEECTTCTTHHHHHHHHHHTT------------------------
T ss_pred HHHHhcC--CCCEEEECCcccHHHHHHHHHcCCceeEeCCCCHHHHHHHHHhhhcc------------------------
Confidence 9988866 99999999999999999888888888777776666666665542210
Q ss_pred hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848 171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ 250 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ 250 (514)
T Consensus 173 -------------------------------------------------------------------------------- 172 (399)
T 3tqx_A 173 -------------------------------------------------------------------------------- 172 (399)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccc
Q psy16848 251 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKA 330 (514)
Q Consensus 251 ~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~ 330 (514)
.+++++|++++++||+|.++|+++|.++|++||+++|+||+|+.++.+..+.+..+..+...++|++++|+||+
T Consensus 173 ------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~ 246 (399)
T 3tqx_A 173 ------GARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKA 246 (399)
T ss_dssp ------TCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSS
T ss_pred ------CCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHh
Confidence 12478999999999999999999999999999999999999987776665544444433334789999999999
Q ss_pred cc-CCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccC
Q psy16848 331 FG-NIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHT 409 (514)
Q Consensus 331 lg-~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 409 (514)
++ +.|||+++++++++.+......+.++.+.++..++++.++++... .+.++.+++++++++++.+.|++.|+++..+
T Consensus 247 ~~g~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 325 (399)
T 3tqx_A 247 LGGASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLK-TEGPQLRKQLQENSRYFRAGMEKLGFQLVPG 325 (399)
T ss_dssp SCSSCCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHTCCBCCC
T ss_pred cccCceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHcCCCcCCC
Confidence 98 778999999999998887654444455788888889999998763 5677899999999999999999988888777
Q ss_pred CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848 410 PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 410 ~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~ 482 (514)
.++++++.+++..+..++.+.|+ ++||.+.++.++..+.+.+++|++++..++++++++++++|++++++++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 397 (399)
T 3tqx_A 326 NHPIIPVMLGDAQLATNMADHLL-QEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKLG 397 (399)
T ss_dssp SSSEEEEEEECHHHHHHHHHHHH-HTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHH-HCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHHHhc
Confidence 88888888877656789999996 7999999877655556678999999988999999999999999998864
No 2
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=100.00 E-value=5.1e-40 Score=340.03 Aligned_cols=351 Identities=31% Similarity=0.482 Sum_probs=295.2
Q ss_pred CCceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccch
Q psy16848 16 SNRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTL 92 (514)
Q Consensus 16 ~g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l 92 (514)
+|+.++||.+++|++ +|++.+++.+++.+++.++++++...|..+...++++++++++|.++.++++||++|+..++
T Consensus 62 ~g~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~al 141 (427)
T 2w8t_A 62 RGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGII 141 (427)
T ss_dssp TTEEEEECSCCCTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHH
T ss_pred CCceEEEEECcccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhCCCceEEecCcHHHHHHHH
Confidence 678899999998865 68999999999999887666677777888899999999999999999999999999999998
Q ss_pred hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848 93 FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV 172 (514)
Q Consensus 93 ~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
.++.+ +||.|+++.++|.++..+++..|++++.++++|+++|++.+.+..
T Consensus 142 ~~l~~--~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~~d~~~le~~l~~~~---------------------------- 191 (427)
T 2w8t_A 142 STLAG--KGEYVILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGRLP---------------------------- 191 (427)
T ss_dssp HHHSC--TTCEEEEETTCCHHHHHHHHHSCSEEEEECTTCHHHHHHHHHTSC----------------------------
T ss_pred HHhcC--CCCEEEECCcccHHHHHHHHHcCCeeEEeCCCCHHHHHHHHHhcc----------------------------
Confidence 88865 999999999999999988888888887777777777766664321
Q ss_pred hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848 173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL 252 (514)
Q Consensus 173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l 252 (514)
T Consensus 192 -------------------------------------------------------------------------------- 191 (427)
T 2w8t_A 192 -------------------------------------------------------------------------------- 191 (427)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc
Q psy16848 253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG 332 (514)
Q Consensus 253 ~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg 332 (514)
..++++|++++++||+|.+.|+++|.++|++||+++|+||+|+.+..+..+.++.+..++..+.|++++||||++|
T Consensus 192 ----~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g 267 (427)
T 2w8t_A 192 ----KEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVG 267 (427)
T ss_dssp ----SSSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC
T ss_pred ----CCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhc
Confidence 1146899999999999999999999999999999999999999877766555555445444467999999999999
Q ss_pred CCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccc-cC-C
Q psy16848 333 NIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVE-HT-P 410 (514)
Q Consensus 333 ~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~-~ 410 (514)
+.||++++++++++.+......+.++++.++..++++.++++.+. ..++++++++++++++.+.|++.|+++. .+ .
T Consensus 268 ~~gG~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 345 (427)
T 2w8t_A 268 TVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLM--TAHEKRERLWSNARALHGGLKAMGFRLGTETCD 345 (427)
T ss_dssp SCCEEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHHHHHHTCEESCSSCC
T ss_pred cCCCEEEeCHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCC
Confidence 888999999998888776533343455778888888889998764 2467899999999999999998888776 55 6
Q ss_pred CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy16848 411 SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL 483 (514)
Q Consensus 411 ~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~~ 483 (514)
++++++.+++.....++.+.|+ ++||.+.++..|..+.+.+++|++++..++++++++++++|+++++++..
T Consensus 346 ~~~~~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~~~ 417 (427)
T 2w8t_A 346 SAIVAVMLEDQEQAAMMWQALL-DGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAVGV 417 (427)
T ss_dssp SSEEEEEESSHHHHHHHHHHHH-HTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEECCHHHHHHHHHHHH-HCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 7788898876556778999996 78999999887766666789999999889999999999999999988764
No 3
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=100.00 E-value=6e-40 Score=337.54 Aligned_cols=346 Identities=23% Similarity=0.293 Sum_probs=290.5
Q ss_pred CCceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccch
Q psy16848 16 SNRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTL 92 (514)
Q Consensus 16 ~g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l 92 (514)
+|+.++||++++|++ +|++.+++.+++++++...+++...+|..+..+++++++++++|.+..++++||++|+..++
T Consensus 57 ~g~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~l 136 (409)
T 3kki_A 57 ASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLL 136 (409)
T ss_dssp CCTTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSEEEEESCHHHHHHHHH
T ss_pred CCCceEEeeccCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCCeEEEecchHHHHHHHH
Confidence 678899999999985 79999999999999887766777777877888999999999999999999999999999999
Q ss_pred hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848 93 FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV 172 (514)
Q Consensus 93 ~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
.++.. +||.|+++.++|.++..+++..|++++.++..|.++|++.+.+.
T Consensus 137 ~~~~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~le~~l~~~----------------------------- 185 (409)
T 3kki_A 137 QTICQ--PNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRMLIQRH----------------------------- 185 (409)
T ss_dssp HHHCC--TTCEEEEETTSCHHHHHHHHHTTCEEEEECTTCHHHHHHHHHHH-----------------------------
T ss_pred HHhcC--CCCEEEECCCcCHHHHHHHHHcCCeEEEecCCCHHHHHHHHHhc-----------------------------
Confidence 88866 99999999999999999888888888877776666666655431
Q ss_pred hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848 173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL 252 (514)
Q Consensus 173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l 252 (514)
T Consensus 186 -------------------------------------------------------------------------------- 185 (409)
T 3kki_A 186 -------------------------------------------------------------------------------- 185 (409)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc
Q psy16848 253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG 332 (514)
Q Consensus 253 ~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg 332 (514)
++++|++++++||+|.+.++++|.++|++||+++|+||+|+.+.++..+.++....+...++|+++.|+||+++
T Consensus 186 ------~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~ 259 (409)
T 3kki_A 186 ------GPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFA 259 (409)
T ss_dssp ------CSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC
T ss_pred ------CCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhC
Confidence 24789999999999999999999999999999999999999777766555544434434468999999999999
Q ss_pred CCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCc
Q psy16848 333 NIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSH 412 (514)
Q Consensus 333 ~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 412 (514)
+.||++++++++++.+......+.++.+.++..++++.++++..... ++++++++++++++.+.|+++++++. +.+.
T Consensus 260 ~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~ 336 (409)
T 3kki_A 260 YRAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESA--DNRRQHLDRMARKLRIGLSQLGLTIR-SESQ 336 (409)
T ss_dssp SSCEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHTTTCCCC-CSSS
T ss_pred CCceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcCCccC-CCCC
Confidence 87899999998888777655554445567888888999999877433 57888999999999999999987765 5677
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848 413 IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 413 ~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~ 482 (514)
++++.++......++.+.|+ ++||.+.+..++..+.+.+++|++++..++++++++++++|+++++..+
T Consensus 337 ~~~~~~~~~~~~~~~~~~L~-~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~~ 405 (409)
T 3kki_A 337 IIGLETGDERNTEKVRDYLE-SNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNYGD 405 (409)
T ss_dssp EEEEEEESHHHHHHHHHHHH-HTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHSS
T ss_pred EEEEEeCCHHHHHHHHHHHH-HCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhcCC
Confidence 88888876555678999996 7899999877665566788999999988999999999999999998753
No 4
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=100.00 E-value=3.6e-38 Score=323.21 Aligned_cols=353 Identities=30% Similarity=0.483 Sum_probs=284.1
Q ss_pred CCceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccch
Q psy16848 16 SNRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTL 92 (514)
Q Consensus 16 ~g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l 92 (514)
+|+.++||.++.+++ +|++.+++.+++.+++...+.+.+.+|..+...++++.+++++|.++.++++|||+|+..++
T Consensus 43 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~ 122 (401)
T 1fc4_A 43 DGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLF 122 (401)
T ss_dssp TSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTH
T ss_pred CCccEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHH
Confidence 678899998888876 78999999999998776554445555556888999999999999888899999999998888
Q ss_pred hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848 93 FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV 172 (514)
Q Consensus 93 ~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
.++.. +||.|+++.++|.++..+++..|.+++.++..|.+++++.+.+...
T Consensus 123 ~~~~~--~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~--------------------------- 173 (401)
T 1fc4_A 123 ETLLG--AEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEARE--------------------------- 173 (401)
T ss_dssp HHHCC--TTCEEEEETTCCHHHHHHHHTSCSEEEEECTTCHHHHHHHHHHHHH---------------------------
T ss_pred HHHcC--CCCEEEEcchhHHHHHHHHHHcCCceEEECCCCHHHHHHHHHHhhc---------------------------
Confidence 88865 9999999999999998888888877777766666666655543110
Q ss_pred hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848 173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL 252 (514)
Q Consensus 173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l 252 (514)
T Consensus 174 -------------------------------------------------------------------------------- 173 (401)
T 1fc4_A 174 -------------------------------------------------------------------------------- 173 (401)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc-
Q psy16848 253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF- 331 (514)
Q Consensus 253 ~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l- 331 (514)
...++++|++++++||+|.++|+++|.++|++||+++|+||+|+.+..++.+.++.+..+...+.|++++|+||++
T Consensus 174 ---~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~ 250 (401)
T 1fc4_A 174 ---AGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALG 250 (401)
T ss_dssp ---TTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC
T ss_pred ---cCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhcc
Confidence 0014789999999999999999999999999999999999999766554333333222333336799999999999
Q ss_pred cCCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCC
Q psy16848 332 GNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPS 411 (514)
Q Consensus 332 g~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 411 (514)
++.||++++++++++.+......+.++.+.++..++++.++++.+.. .++.+++++++++++.+.|++.|+++.++.+
T Consensus 251 ~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 328 (401)
T 1fc4_A 251 GASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEA--GSELRDRLWANARQFREQMSAAGFTLAGADH 328 (401)
T ss_dssp SSSCEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTTCCBCCSSS
T ss_pred CCCCEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcCCcccCCCC
Confidence 66789999999999888765433333557889999999999987643 3568899999999999999998887776677
Q ss_pred cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy16848 412 HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL 483 (514)
Q Consensus 412 ~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~~ 483 (514)
+++++.+++..+..++.+.|. ++||.+.++..+..+.+.+++|++++..++++++++++++|++++++++.
T Consensus 329 ~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 399 (401)
T 1fc4_A 329 AIIPVMLGDAVVAQKFARELQ-KEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLGV 399 (401)
T ss_dssp SEEEEEEECHHHHHHHHHHHH-HTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTTS
T ss_pred CEEEEEcCChHHHHHHHHHHH-HCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 788888876455778999996 88999999887655555679999999889999999999999999988753
No 5
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=100.00 E-value=3.5e-38 Score=323.36 Aligned_cols=354 Identities=47% Similarity=0.824 Sum_probs=280.3
Q ss_pred CCceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccch
Q psy16848 16 SNRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTL 92 (514)
Q Consensus 16 ~g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l 92 (514)
+|+.++|+.++++++ +|++.+++.+++++++.+.+++...++..+...++++++++++|.++.++++||++++..++
T Consensus 44 ~g~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~~~~ 123 (401)
T 2bwn_A 44 GKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATL 123 (401)
T ss_dssp CEEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHH
T ss_pred CCCcEEEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECCcHHHHHHHH
Confidence 567889998887764 78999999999998776555555566777889999999999999988899999999888887
Q ss_pred hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848 93 FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV 172 (514)
Q Consensus 93 ~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
..+....+||.|+++.++|.+...+++..|++++.++.+|.++|++.+.+
T Consensus 124 ~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~le~~l~~------------------------------ 173 (401)
T 2bwn_A 124 STLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAA------------------------------ 173 (401)
T ss_dssp HHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTTCHHHHHHHHHH------------------------------
T ss_pred HHHhcCCCCCEEEECchhhHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHh------------------------------
Confidence 76542348999999999999999888777777776666555555555433
Q ss_pred hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848 173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL 252 (514)
Q Consensus 173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l 252 (514)
T Consensus 174 -------------------------------------------------------------------------------- 173 (401)
T 2bwn_A 174 -------------------------------------------------------------------------------- 173 (401)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc
Q psy16848 253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG 332 (514)
Q Consensus 253 ~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg 332 (514)
...+++++|++++++||+|.++|+++|.++|++||+++|+||+|+.|.+++.+.++....+...+.|++++|+||+++
T Consensus 174 --~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~ 251 (401)
T 2bwn_A 174 --DDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYG 251 (401)
T ss_dssp --SCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTC
T ss_pred --hccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhcc
Confidence 211347899999999999999999999999999999999999999777666554443223322346899999999999
Q ss_pred CCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCc
Q psy16848 333 NIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSH 412 (514)
Q Consensus 333 ~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 412 (514)
..|||+++++++++.+......+.++.+.++..++++.++++.+...++++++++++++++++.+.|++.|+++..+.++
T Consensus 252 ~~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 331 (401)
T 2bwn_A 252 VFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDHGSH 331 (401)
T ss_dssp SCCEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSSS
T ss_pred CCCCEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCC
Confidence 77899999999988877544333334455668888888999887554567889999999999999998888877777777
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 413 IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 413 ~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
++++.+++..+..++.+.|++++||.+.++..+..+.+.+++|++++..++++|+++++++|+++++++
T Consensus 332 ~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~ 400 (401)
T 2bwn_A 332 IVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC 400 (401)
T ss_dssp CEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred eEEEEeCChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence 888888764556788888854789999988765544455799999998899999999999999987653
No 6
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=100.00 E-value=8.3e-38 Score=318.61 Aligned_cols=345 Identities=28% Similarity=0.446 Sum_probs=276.8
Q ss_pred cCCceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccc
Q psy16848 15 KSNRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDST 91 (514)
Q Consensus 15 ~~g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~ 91 (514)
.+|..++||.++.+++ +|++.+++.++++.++...+.+++.+|..+...++++.+++++|.++.++++|||+|+..+
T Consensus 36 ~~g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~ 115 (384)
T 1bs0_A 36 ADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAV 115 (384)
T ss_dssp ETTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHH
T ss_pred ECCceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHH
Confidence 4677899999877643 7899999999999876544445555566788999999999999998899999999999989
Q ss_pred hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848 92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE 171 (514)
Q Consensus 92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
+.++.+ +||.|+++.++|.++..+++..|.+++.++..|.+++++.+.+
T Consensus 116 ~~~~~~--~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~----------------------------- 164 (384)
T 1bs0_A 116 IAAMMA--KEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLAS----------------------------- 164 (384)
T ss_dssp HHHHCC--TTCEEEEETTCCHHHHHHHHTSSSEEEEECTTCHHHHHHHHHS-----------------------------
T ss_pred HHHhCC--CCcEEEEcccccHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHh-----------------------------
Confidence 888865 9999999999999999888888877777666666666555432
Q ss_pred hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848 172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV 251 (514)
Q Consensus 172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~ 251 (514)
T Consensus 165 -------------------------------------------------------------------------------- 164 (384)
T 1bs0_A 165 -------------------------------------------------------------------------------- 164 (384)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848 252 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF 331 (514)
Q Consensus 252 l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l 331 (514)
.. ++++++++++++||+|.++|+++|.++|++||+++|+||+|+.+..++.+.++....+ .++|++++|+||++
T Consensus 165 ---~~-~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~--~~~di~~~s~sK~~ 238 (384)
T 1bs0_A 165 ---PC-PGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQK--VKPELLVVTFGKGF 238 (384)
T ss_dssp ---CC-SSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTT--CCCSEEEEESSSTT
T ss_pred ---cC-CCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcC--CCCcEEEeeccchh
Confidence 11 1257899999999999999999999999999999999999987765433333322232 25789999999999
Q ss_pred cCCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCC
Q psy16848 332 GNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPS 411 (514)
Q Consensus 332 g~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 411 (514)
++.||++++++++++.+......+.++++.++..++++.++++.+.+.+.++.+++++++++++.+.|++.++++.++.+
T Consensus 239 ~~~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 318 (384)
T 1bs0_A 239 GVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADSCS 318 (384)
T ss_dssp SSCCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECSCCS
T ss_pred hccCcEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Confidence 98889999999999888765433333446788889888999987643255678999999999999999998887765667
Q ss_pred cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848 412 HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV 477 (514)
Q Consensus 412 ~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~ 477 (514)
+++++.+++..+..++.+.|. ++||.+.++..+..+.+.+++|++++..++++++++++++|+++
T Consensus 319 ~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 319 AIQPLIVGDNSRALQLAEKLR-QQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp SBCCEEEESHHHHHHHHHHHH-HTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHH-HCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 777777765455778999996 78999998886554455689999999888999999999999864
No 7
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=100.00 E-value=1.9e-37 Score=317.55 Aligned_cols=352 Identities=30% Similarity=0.475 Sum_probs=279.9
Q ss_pred cCCceeeecccCCCC---CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccc
Q psy16848 15 KSNRVTCRLSSVQYK---VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDST 91 (514)
Q Consensus 15 ~~g~~~~d~~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~ 91 (514)
.+|+.++||.++.++ .+|.+.+++.+++..+.....++....|..+..+++++++++++|.+++++++||++|+..+
T Consensus 40 ~~g~~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~v~~~~ggt~a~~~~ 119 (398)
T 3a2b_A 40 IDGRRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGP 119 (398)
T ss_dssp ETTEEEEECSCSCTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHH
T ss_pred ECCceEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHH
Confidence 467789999887764 46899999999998866544445556677889999999999999999889999999999999
Q ss_pred hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848 92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE 171 (514)
Q Consensus 92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
+.++.. +||.|+++.++|.+...+++..|.+++.++..|.++|++.+.+.
T Consensus 120 ~~~~~~--~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~---------------------------- 169 (398)
T 3a2b_A 120 LSCLMG--RNDYILLDERDHASIIDGSRLSFSKVIKYGHNNMEDLRAKLSRL---------------------------- 169 (398)
T ss_dssp HHHSSC--TTCEEEEETTCCHHHHHHHHHSSSEEEEECTTCHHHHHHHHHTS----------------------------
T ss_pred HHHHhC--CCCEEEECCccCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHhh----------------------------
Confidence 988865 99999999999999998888888777777666666665555432
Q ss_pred hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848 172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV 251 (514)
Q Consensus 172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~ 251 (514)
T Consensus 170 -------------------------------------------------------------------------------- 169 (398)
T 3a2b_A 170 -------------------------------------------------------------------------------- 169 (398)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848 252 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF 331 (514)
Q Consensus 252 l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l 331 (514)
..+++++|++++++||||.+.++++|.++|++||+++|+||+|+.+.++..+.++.+..+...++|++++|+||++
T Consensus 170 ----~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~ 245 (398)
T 3a2b_A 170 ----PEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSL 245 (398)
T ss_dssp ----CSSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTT
T ss_pred ----ccCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccc
Confidence 1114789999999999999999999999999999999999999977554433333332232224699999999999
Q ss_pred cCCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCC
Q psy16848 332 GNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPS 411 (514)
Q Consensus 332 g~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 411 (514)
++.|||+++++++++.+......+.++...++..++++.++++... +.++.+++++++++++.+.|++.|+++..+.+
T Consensus 246 ~~~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~g 323 (398)
T 3a2b_A 246 ASLGGFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQ--NEPEHIEKLWKNTDYAKAQLLDHGFDLGATES 323 (398)
T ss_dssp CSSCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHH--HCTHHHHHHHHHHHHHHHHHHHTTCCBCSCCS
T ss_pred cCCCcEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence 9878999999999988876432222233556666666777887652 34568899999999999999998888777778
Q ss_pred cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy16848 412 HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL 483 (514)
Q Consensus 412 ~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~~ 483 (514)
.++++.+++..+..++.+.|+ ++||.+.++..|..+.+.+++|++++..++++++++++++|++++++++.
T Consensus 324 ~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~~~ 394 (398)
T 3a2b_A 324 PILPIFIRSNEKTFWVTKMLQ-DDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQAEV 394 (398)
T ss_dssp SEEEEECCCHHHHHHHHHHHH-HTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHCC-
T ss_pred CEEEEEcCCHHHHHHHHHHHH-HCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 888898876556778999996 77999999887654445679999999888999999999999999988754
No 8
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=100.00 E-value=1.3e-32 Score=282.10 Aligned_cols=348 Identities=12% Similarity=0.066 Sum_probs=262.6
Q ss_pred eeeecccCCCC---CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC-----CcEEEEecccccccc
Q psy16848 19 VTCRLSSVQYK---VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK-----EAGLVFTSCYVANDS 90 (514)
Q Consensus 19 ~~~d~~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~i~~~sGt~a~~~ 90 (514)
.++||++++|. .+|++.+++.+++...+. .++....|..++.+++++++++++|. +.+++++||++|+..
T Consensus 40 ~~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~--~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~ 117 (407)
T 3nra_A 40 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGV--QAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL 117 (407)
T ss_dssp CCEETTSCCTTTSCCCTTHHHHHHHHHHHTHH--HHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHH
T ss_pred ceeeecCcCCCCCCCcHHHHHHHHHHHhcCCC--CCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHH
Confidence 38999987776 378999999999985321 11122336678999999999999886 567888888999999
Q ss_pred chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848 91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 170 (514)
Q Consensus 91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
++.++.. +||.|+++.++|.+...+++..|.+++.++.+..+ .
T Consensus 118 ~~~~l~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------~-------------------------- 160 (407)
T 3nra_A 118 AVAATVA--RGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVS---------A-------------------------- 160 (407)
T ss_dssp HHHTTCC--TTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCS---------S--------------------------
T ss_pred HHHHhCC--CCCEEEEcCCcccchHHHHHHcCCEEEEeeccccc---------c--------------------------
Confidence 9988866 99999999999999999998888887766541000 0
Q ss_pred hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848 171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ 250 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ 250 (514)
..... ..|.+.+++
T Consensus 161 ---------------------~~~~~---------------------------------------------~~d~~~l~~ 174 (407)
T 3nra_A 161 ---------------------DETRA---------------------------------------------GLDLTGLEE 174 (407)
T ss_dssp ---------------------CCSSC---------------------------------------------CBCHHHHHH
T ss_pred ---------------------cCcCC---------------------------------------------CcCHHHHHH
Confidence 00000 015566666
Q ss_pred HHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC-CCCCccccCCCccCceEEEcC
Q psy16848 251 VLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE-HGAGIGERDGQLHNMDIISGT 326 (514)
Q Consensus 251 ~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~-~~~~~~~~~~~~~~~di~~~S 326 (514)
.+++ +++++++++++||||.++| +++|.++|++||+++|+||+|+.+..+. ....+........+.+++++|
T Consensus 175 ~l~~----~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s 250 (407)
T 3nra_A 175 AFKA----GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMG 250 (407)
T ss_dssp HHHT----TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEEC
T ss_pred HHhh----CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeC
Confidence 6654 4788999999999999999 9999999999999999999999554432 221222111012467899999
Q ss_pred CcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-
Q psy16848 327 LGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI- 402 (514)
Q Consensus 327 ~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 402 (514)
+||.+|.+| ||+++++++++.+......+ +.+.++..++++.++++.. ...+++.+++++++++++.+.|+++
T Consensus 251 ~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~ 327 (407)
T 3nra_A 251 PSKTESLSGYRLGVAFGSRAIIARMEKLQAIV--SLRAAGYSQAVLRGWFDEA-PGWMEDRIARHQAIRDELLHVLRGCE 327 (407)
T ss_dssp SSSTTCCGGGCCEEEEECHHHHHHHHHHHHHH--TSSSCHHHHGGGGGTTCCC-TTHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred cccccCCCeeeEEEEEcCHHHHHHHHHHHhhh--ccCCChHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999998656 99999999999888766554 4456777777766666521 3456778889999999999999988
Q ss_pred CCccccCCC-cEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848 403 GFPVEHTPS-HIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS 480 (514)
Q Consensus 403 g~~~~~~~~-~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~ 480 (514)
++.+..+.+ .++++.++. ..+..++.+.|++++||.+.++..|. +.+.+++|++++ .+++++++++++|++++++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~-~~~~~~iRis~~--~~~~~i~~~~~~l~~~~~~ 404 (407)
T 3nra_A 328 GVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFS-PHTADSVRLNFS--QDHEAAVAAARRIVTLVER 404 (407)
T ss_dssp TCBCCCCSBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTC-TTCTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred CceeccCCeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhC-CCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHH
Confidence 787766654 566677765 45678899999645799999988755 445789999998 3899999999999999887
Q ss_pred c
Q psy16848 481 L 481 (514)
Q Consensus 481 ~ 481 (514)
+
T Consensus 405 ~ 405 (407)
T 3nra_A 405 Y 405 (407)
T ss_dssp H
T ss_pred h
Confidence 5
No 9
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=100.00 E-value=4.2e-31 Score=271.86 Aligned_cols=344 Identities=17% Similarity=0.217 Sum_probs=247.7
Q ss_pred CceeeecccCCCC-CChhHHHHHHHHHHHhCCCCCCcCcccCc--chHHHHHHHHHHhHcCC---CcEEEEecccccccc
Q psy16848 17 NRVTCRLSSVQYK-VPKGGRKCLGEALEKFGTGAGGTRNISGN--SLFHEKLEEDVAKLHQK---EAGLVFTSCYVANDS 90 (514)
Q Consensus 17 g~~~~d~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~---~~~i~~~sGt~a~~~ 90 (514)
|+.+++|+.+.+. .+|.+.+++.+++..+....+.....++. .+...++++.++++++. +.+++++|||+|+..
T Consensus 26 g~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~ 105 (420)
T 1t3i_A 26 GHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINL 105 (420)
T ss_dssp TEECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHH
T ss_pred CCceEEecCCccCCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHH
Confidence 4557888665554 36899999999998754322211222332 46678999999999998 567888888999999
Q ss_pred chhhc----cccCCCceEEecCccchhhh----hhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCC
Q psy16848 91 TLFTL----GKMIPGLHYISDAGNHASMI----QGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGA 162 (514)
Q Consensus 91 ~l~~l----~~~~~gd~v~~~~~~h~~~~----~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
++.++ .. +||.|+++.++|.+.. ..++..|.+++.++.++
T Consensus 106 ~~~~~~~~~~~--~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~------------------------------ 153 (420)
T 1t3i_A 106 VAYSWGMNNLK--AGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDE------------------------------ 153 (420)
T ss_dssp HHHHTHHHHCC--TTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCT------------------------------
T ss_pred HHHHhhhcccC--CCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCC------------------------------
Confidence 99888 55 9999999999998853 22233344433322200
Q ss_pred ccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC
Q psy16848 163 ICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH 242 (514)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~ 242 (514)
.+ .
T Consensus 154 ---------------------------------~~--------------------------------------------~ 156 (420)
T 1t3i_A 154 ---------------------------------QE--------------------------------------------S 156 (420)
T ss_dssp ---------------------------------TS--------------------------------------------S
T ss_pred ---------------------------------CC--------------------------------------------C
Confidence 00 0
Q ss_pred CChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceE
Q psy16848 243 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDI 322 (514)
Q Consensus 243 ~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di 322 (514)
.|.+.+++.+ ++++++|++++++||+|.++|+++|.++|++||+++|+|++|++|... + +.. ..++|+
T Consensus 157 ~d~~~l~~~l----~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~-----~-~~~--~~~~di 224 (420)
T 1t3i_A 157 FDLEHFKTLL----SEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYP-----L-DVQ--LIDCDW 224 (420)
T ss_dssp BCHHHHHHHC----CTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSC-----C-CHH--HHTCSE
T ss_pred cCHHHHHHhh----CCCceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCcc-----C-chh--hcCCCE
Confidence 1344444444 346899999999999999999999999999999999999999965431 1 111 235899
Q ss_pred EEcCCcccccCCC-eEEEecHHHHHHHHhhcCceE------------------eccCCcHHHHHH-HHHHHHHhhhchHH
Q psy16848 323 ISGTLGKAFGNIG-GYIVGTKNFIDTIRSYAAGFI------------------FTTSLPPTVLAG-AREAIRILSSQEGV 382 (514)
Q Consensus 323 ~~~S~sK~lg~~G-G~l~~~~~~~~~l~~~~~~~~------------------~~~~~~~~~~~a-~~~~l~~~~~~~~~ 382 (514)
+++|+||.+|+.| |++++++++++.+......+. +..+.++..+.+ +.++++.+.+.+++
T Consensus 225 ~~~s~sK~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~ 304 (420)
T 1t3i_A 225 LVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGME 304 (420)
T ss_dssp EEEEGGGTTSCTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHH
T ss_pred EEEehhhhcCCCceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHH
Confidence 9999999888767 999999999888765443210 122344444444 44467776555677
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CCccccCC------CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC----CC-
Q psy16848 383 ELRAKHQDIVAYLRNELIQI-GFPVEHTP------SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP----VG- 450 (514)
Q Consensus 383 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~------~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~----~~- 450 (514)
+++++++++++++.+.|++. ++++..+. ++++.+.+++ .+..++.+.| .++||.+.++..|..+ .+
T Consensus 305 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l-~~~gi~v~~~~~~~~~~~~~~g~ 382 (420)
T 1t3i_A 305 NIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAG-LHASDVATMV-DQDGIAIRSGHHCTQPLHRLFDA 382 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETT-BCHHHHHHHH-HTTTEECBCSCTTCHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEECC-CCHHHHHHHH-HHCCeEEeeccccchHHHHhcCC
Confidence 88999999999999999998 77776553 6788888764 4567888888 5999999987543211 12
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy16848 451 EEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL 483 (514)
Q Consensus 451 ~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~~ 483 (514)
.+++|++++..++++++++++++|++++++++.
T Consensus 383 ~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 383 SGSARASLYFYNTKEEIDLFLQSLQATIRFFSD 415 (420)
T ss_dssp CCCEEEECCTTCCHHHHHHHHHHHHHHHHHTC-
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 578999999888999999999999999988753
No 10
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=100.00 E-value=6.6e-31 Score=267.89 Aligned_cols=348 Identities=14% Similarity=0.062 Sum_probs=253.1
Q ss_pred CCceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccccccc
Q psy16848 16 SNRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVAND 89 (514)
Q Consensus 16 ~g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a~~ 89 (514)
+|+.++||..++ +..+|++.+++.+++.+....++. ...++.+++++.+++.+| .+..+++++|++|+.
T Consensus 25 ~g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-----~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~ 99 (391)
T 3dzz_A 25 LKEKELPMWIAEMDFKIAPEIMASMEEKLKVAAFGYES-----VPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAIS 99 (391)
T ss_dssp CCTTCEECCSSCCSSCCCHHHHHHHHHHHTTCCCCCBC-----CCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHH
T ss_pred cCCCceeccccCCCCCCCHHHHHHHHHHHhcCcCCCCC-----CCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHH
Confidence 455678885433 335789999999988762222211 135777888888888876 345566666788999
Q ss_pred cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848 90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL 169 (514)
Q Consensus 90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
.++.++.. +||.|+++.++|.+....++..|.+++.++.... ++.|
T Consensus 100 ~~~~~l~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------------------~~~~------------ 145 (391)
T 3dzz_A 100 AMVRQFTS--PGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYE--------------------NSKY------------ 145 (391)
T ss_dssp HHHHHHSC--TTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEE--------------------TTEE------------
T ss_pred HHHHHhCC--CCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeec--------------------CCce------------
Confidence 99988866 9999999999999999888888887776554100 0000
Q ss_pred hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848 170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT 249 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~ 249 (514)
..|.+.++
T Consensus 146 ------------------------------------------------------------------------~~d~~~l~ 153 (391)
T 3dzz_A 146 ------------------------------------------------------------------------SVNWADLE 153 (391)
T ss_dssp ------------------------------------------------------------------------ECCHHHHH
T ss_pred ------------------------------------------------------------------------eecHHHHH
Confidence 01455555
Q ss_pred HHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEc
Q psy16848 250 QVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISG 325 (514)
Q Consensus 250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~ 325 (514)
+.+++ +++++|++++++||+|.+++ +++|.++|++||+++|+||+|+.+.. +....++........+.+++++
T Consensus 154 ~~l~~---~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~ 230 (391)
T 3dzz_A 154 EKLAT---PSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLI 230 (391)
T ss_dssp HHHTS---TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEE
T ss_pred HHHhc---cCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEE
Confidence 55542 35889999999999999976 89999999999999999999995443 3222222222111124559999
Q ss_pred CCcccccCCC---eEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848 326 TLGKAFGNIG---GYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ 401 (514)
Q Consensus 326 S~sK~lg~~G---G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 401 (514)
|+||++|.+| |+++++ +++++.+........ ..+.++..++++.++++.. .+++++.+++++++++++.+.|++
T Consensus 231 s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~ 308 (391)
T 3dzz_A 231 SPSKTFNLAALHAACAIIPNPDLRARAEESFFLAG-IGEPNLLAIPAAIAAYEEG-HDWLRELKQVLRDNFAYAREFLAK 308 (391)
T ss_dssp CSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHHHT-CSSCCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eChhhccccchhheEEEECCHHHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998656 999987 888888876543221 1256777888888888763 455778899999999999999998
Q ss_pred -C-CCccccCCCcE-EEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848 402 -I-GFPVEHTPSHI-IPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV 477 (514)
Q Consensus 402 -~-g~~~~~~~~~~-~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~ 477 (514)
. ++.+..+.+++ +++.++. ..+..++.+.|++++||.+.++..+.. .+.+++|++++ ++++++++++++|+++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-~~~~~iRis~~--~~~~~i~~~l~~l~~~ 385 (391)
T 3dzz_A 309 EVPEVKVLDSNASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRG-NGHEFVRINLA--CPKELVIDGMQRLKQG 385 (391)
T ss_dssp HCTTSEECCCCBSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCT-TGGGEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred hCCCcEEeccCceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCC-CCCCEEEEEec--CCHHHHHHHHHHHHHH
Confidence 4 88877776654 4577764 246788999996589999999886443 34689999998 6899999999999999
Q ss_pred HHHcC
Q psy16848 478 WKSLD 482 (514)
Q Consensus 478 l~~~~ 482 (514)
++++.
T Consensus 386 l~~~~ 390 (391)
T 3dzz_A 386 VLNLN 390 (391)
T ss_dssp HHTCC
T ss_pred HHHhh
Confidence 88753
No 11
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=100.00 E-value=6.3e-31 Score=266.39 Aligned_cols=333 Identities=16% Similarity=0.102 Sum_probs=244.9
Q ss_pred CCceeeecccCCCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccccccc
Q psy16848 16 SNRVTCRLSSVQYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVAND 89 (514)
Q Consensus 16 ~g~~~~d~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a~~ 89 (514)
+|+.++||.++.+. .+|.+.+++.++++..... +....+..++.+++.+.+.+.+| .+.+++++||++|+.
T Consensus 27 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~---y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 103 (370)
T 2z61_A 27 EGKKVIHLEIGEPDFNTPKPIVDEGIKSLKEGKTH---YTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLF 103 (370)
T ss_dssp TTCCCEECCCCSCSSCCCHHHHHHHHHHHHTTCCS---CCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHH
T ss_pred cCCCEEEccCCCCCCCCCHHHHHHHHHHHHcCccC---CCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHH
Confidence 57788999765542 3688999999988752111 11122344455555555544433 245777788889999
Q ss_pred cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848 90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL 169 (514)
Q Consensus 90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
.++.++.. +||.|+++.+.|.+....++..|.+++.++ .|.++|
T Consensus 104 ~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~-~d~~~l--------------------------------- 147 (370)
T 2z61_A 104 FALSSIID--DGDEVLIQNPCYPCYKNFIRFLGAKPVFCD-FTVESL--------------------------------- 147 (370)
T ss_dssp HHHHHHCC--TTCEEEEESSCCTHHHHHHHHTTCEEEEEC-SSHHHH---------------------------------
T ss_pred HHHHHhcC--CCCEEEEeCCCchhHHHHHHHcCCEEEEeC-CCHHHH---------------------------------
Confidence 99988865 999999999999998877777776665554 333333
Q ss_pred hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848 170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT 249 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~ 249 (514)
+
T Consensus 148 -------------------------------------------------------------------------------~ 148 (370)
T 2z61_A 148 -------------------------------------------------------------------------------E 148 (370)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred -------------------------------------------------------------------------------H
Confidence 3
Q ss_pred HHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcc
Q psy16848 250 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK 329 (514)
Q Consensus 250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK 329 (514)
+.++ ++++++++++++||+|.++|.+ |.++|++||+++|+||+|+.+..+....++....+ ..+.|++++|+||
T Consensus 149 ~~l~----~~~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~i~~~s~sK 222 (370)
T 2z61_A 149 EALS----DKTKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDE-NLEKTILINGFSK 222 (370)
T ss_dssp HHCC----SSEEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCT-TCSSEEEEEESTT
T ss_pred Hhcc----cCceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccC-CCCcEEEEecChh
Confidence 3332 2478899999999999999999 99999999999999999996544322222222211 2367999999999
Q ss_pred cccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCcc
Q psy16848 330 AFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPV 406 (514)
Q Consensus 330 ~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 406 (514)
++|.+| |++++++++++.+......+ +.+.++..+.++.++++.+...++++.+++++++++++.+.|++.|+++
T Consensus 223 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 300 (370)
T 2z61_A 223 LYAMTGWRIGYVISNDEIIEAILKLQQNL--FISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDFGWEV 300 (370)
T ss_dssp TTTCGGGCCEEEECCHHHHHHHHHHHHHH--TSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBC
T ss_pred ccCCccceEEEEEECHHHHHHHHHHHhhc--ccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCee
Confidence 998656 99999999998887665443 3467888888888888652245667888999999999999999888877
Q ss_pred ccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848 407 EHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK 479 (514)
Q Consensus 407 ~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~ 479 (514)
..+.++ ++++.++. +..++.+.|++++||.+.++..+.. .+.+++|++++ ++++++++++++|+++++
T Consensus 301 ~~~~~~~~~~~~~~~--~~~~~~~~l~~~~gi~v~~g~~f~~-~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 301 NNPIGAYYVFPNIGE--DGREFAYKLLKEKFVALTPGIGFGS-KGKNYIRISYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp CCCCBTTEECCBCSS--CHHHHHHHHHHHHCEECEEGGGGCG-GGSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred cCCCcceEEEEecCC--CHHHHHHHHHHhCCEEEeCchhhCC-CCCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 666554 45567664 5678889986478999999876542 24679999999 689999999999998764
No 12
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.1e-30 Score=268.70 Aligned_cols=349 Identities=15% Similarity=0.109 Sum_probs=249.3
Q ss_pred cCCceeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC-----CcEEEEeccccc
Q psy16848 15 KSNRVTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK-----EAGLVFTSCYVA 87 (514)
Q Consensus 15 ~~g~~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~i~~~sGt~a 87 (514)
.+|+.++||.++.. ..+|.+.+++.++++.... .++....|..++.+++.+.+.+.+|. +.+++++||++|
T Consensus 34 ~~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~--~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a 111 (412)
T 2x5d_A 34 RRGEDIIDLSMGNPDGPTPPHIVEKLCTVAQREDT--HGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEG 111 (412)
T ss_dssp HTTCCCEECSSCCCCSCCCHHHHHHHHHTC-----------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHH
T ss_pred hcCCCEEecCCCCCCCCCCHHHHHHHHHHHhCCCC--CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHH
Confidence 46788999976543 2478999999888765311 11111223344444444444444463 367777888899
Q ss_pred cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848 88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK 167 (514)
Q Consensus 88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
+..++.++.. +||.|+++.+.|.+....++..|.+++.++.++
T Consensus 112 ~~~~~~~~~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~----------------------------------- 154 (412)
T 2x5d_A 112 LAHLMLATLD--HGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVP----------------------------------- 154 (412)
T ss_dssp HHHHHHHHCC--TTCEEEEEESCCHHHHHHHHHHTCEEEEEECST-----------------------------------
T ss_pred HHHHHHHhCC--CCCEEEEcCCCchhHHHHHHHcCCEEEEeecCC-----------------------------------
Confidence 9999988865 999999999999998877766666655443311
Q ss_pred HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848 168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH 247 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~ 247 (514)
.+++..
T Consensus 155 --------------------------------------------------------------------------~~~~~~ 160 (412)
T 2x5d_A 155 --------------------------------------------------------------------------GIDFFN 160 (412)
T ss_dssp --------------------------------------------------------------------------TSCHHH
T ss_pred --------------------------------------------------------------------------ccCCCC
Confidence 002222
Q ss_pred HHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEE
Q psy16848 248 LTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDII 323 (514)
Q Consensus 248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~ 323 (514)
+.+.+++...++++++++++++||||.++| +++|.++|++||+++|+||+|+.+.. |....++..... ..+.+++
T Consensus 161 d~~~l~~~i~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~-~~~~~i~ 239 (412)
T 2x5d_A 161 ELERAIRESIPKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPG-AKDIAVE 239 (412)
T ss_dssp HHHHHHHTEESCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT-GGGTEEE
T ss_pred CHHHHHHhcccCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccC-ccCcEEE
Confidence 233444433356889999999999999998 68999999999999999999995543 333333333221 1367899
Q ss_pred EcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q psy16848 324 SGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI 400 (514)
Q Consensus 324 ~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 400 (514)
++|+||++|.+| ||+++++++++.+....... +.+.+++.+.++.++|+.. ..++++++++++++++++.+.|+
T Consensus 240 ~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~ 316 (412)
T 2x5d_A 240 FFTLSKSYNMAGWRIGFMVGNPELVSALARIKSYH--DYGTFTPLQVAAIAALEGD-QQCVRDIARQYQQRRDVLVKGLR 316 (412)
T ss_dssp EEECC-CCSCTTSCCEEEEECHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCccccCCcccceEEEEcCHHHHHHHHHHHhhh--ccCCCHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998657 99999999998887655433 3367888888888888743 34677889999999999999999
Q ss_pred hCCCccccCCCc-EEEEEeCCCc---cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848 401 QIGFPVEHTPSH-IIPIKIGNPA---LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA 476 (514)
Q Consensus 401 ~~g~~~~~~~~~-~~~i~l~~~~---~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~ 476 (514)
+.++.+..+.++ ++++.++... +..++++.|++++||.+.++..|. ..+.+++|++++. +++++++++++|++
T Consensus 317 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~-~~~~~~iRis~~~--~~~~l~~~l~~l~~ 393 (412)
T 2x5d_A 317 EAGWMVENPKASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFG-DYGDDHVRFALIE--NRDRLRQAVRGIKA 393 (412)
T ss_dssp HHTCCCCCCSBSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGC-GGGTTEEEEECCS--CHHHHHHHHHHHHH
T ss_pred HCCCEecCCCeeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhC-CCCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 888877666654 6778886543 577899998645799999988653 2346799999994 89999999999999
Q ss_pred HHHHcCC
Q psy16848 477 VWKSLDL 483 (514)
Q Consensus 477 ~l~~~~~ 483 (514)
++++...
T Consensus 394 ~l~~~~~ 400 (412)
T 2x5d_A 394 MFRADGL 400 (412)
T ss_dssp HHHHTTC
T ss_pred HHHhcCC
Confidence 9988653
No 13
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=100.00 E-value=6.2e-31 Score=269.23 Aligned_cols=338 Identities=17% Similarity=0.185 Sum_probs=244.6
Q ss_pred eeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCc--ccCcchHHHHHHHHHHhHcCC---CcEEEEeccccccccchhh
Q psy16848 20 TCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRN--ISGNSLFHEKLEEDVAKLHQK---EAGLVFTSCYVANDSTLFT 94 (514)
Q Consensus 20 ~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~---~~~i~~~sGt~a~~~~l~~ 94 (514)
++|.++.. ..+|++.+++.++++....+...+.. .+...+...+++++++++++. +..++++|||+|+..++.+
T Consensus 26 ~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~ 104 (406)
T 1kmj_A 26 YLDSAASA-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANS 104 (406)
T ss_dssp ECCTTTCC-CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHH
T ss_pred EecCCccC-CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHH
Confidence 34444444 34789999999999875432222111 122356788999999999987 4566677788999999988
Q ss_pred c----cccCCCceEEecCccchhhhhh----hhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccch
Q psy16848 95 L----GKMIPGLHYISDAGNHASMIQG----IRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL 166 (514)
Q Consensus 95 l----~~~~~gd~v~~~~~~h~~~~~~----~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
+ .. +||.|+++.++|.++... ++..|.+++.++.++
T Consensus 105 ~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------------------- 148 (406)
T 1kmj_A 105 WGNSNVR--AGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNP---------------------------------- 148 (406)
T ss_dssp THHHHCC--TTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCT----------------------------------
T ss_pred hhhhcCC--CCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCC----------------------------------
Confidence 8 55 999999999999887533 233344433322210
Q ss_pred hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848 167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN 246 (514)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~ 246 (514)
.+ ..|.+
T Consensus 149 -----------------------------~~--------------------------------------------~~d~~ 155 (406)
T 1kmj_A 149 -----------------------------DG--------------------------------------------TLQLE 155 (406)
T ss_dssp -----------------------------TS--------------------------------------------CBCGG
T ss_pred -----------------------------CC--------------------------------------------CcCHH
Confidence 00 01456
Q ss_pred HHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcC
Q psy16848 247 HLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT 326 (514)
Q Consensus 247 ~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S 326 (514)
.+++.+. +++++|++++++||+|.++|+++|.++|++||+++|+|++|+.|.. ++ +.. ..++|++++|
T Consensus 156 ~l~~~l~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~-----~~-~~~--~~~~d~~~~s 223 (406)
T 1kmj_A 156 TLPTLFD----EKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHH-----PV-DVQ--ALDCDFYVFS 223 (406)
T ss_dssp GHHHHCC----TTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTS-----CC-CHH--HHTCSEEEEE
T ss_pred HHHHHhc----cCCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCC-----CC-ccc--ccCCCEEEEE
Confidence 6666553 4689999999999999999999999999999999999999996542 11 111 2368999999
Q ss_pred CcccccCCC-eEEEecHHHHHHHHhhcCce-------------------EeccCCcHHHHH-HHHHHHHHhhhchHHHHH
Q psy16848 327 LGKAFGNIG-GYIVGTKNFIDTIRSYAAGF-------------------IFTTSLPPTVLA-GAREAIRILSSQEGVELR 385 (514)
Q Consensus 327 ~sK~lg~~G-G~l~~~~~~~~~l~~~~~~~-------------------~~~~~~~~~~~~-a~~~~l~~~~~~~~~~~~ 385 (514)
+||.+|+.| |++++++++++.+.....+. .+..+.+...+. ++.++++.+.+.++++++
T Consensus 224 ~~K~~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~ 303 (406)
T 1kmj_A 224 GHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIA 303 (406)
T ss_dssp GGGTTSCTTCEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred chhccCCCCcEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHH
Confidence 999998888 99999999988876543211 011223444444 444777776555677899
Q ss_pred HHHHHHHHHHHHHHHhC-CCccccC--CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC-----CCCcEEEEE
Q psy16848 386 AKHQDIVAYLRNELIQI-GFPVEHT--PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP-----VGEEKIRLA 457 (514)
Q Consensus 386 ~~~~~~~~~l~~~L~~~-g~~~~~~--~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~-----~~~~~iRl~ 457 (514)
++++++++++.+.|+++ ++.+..+ .++++.+.++. .+..++.+.| .++||.+.++..|..+ ..++++|++
T Consensus 304 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~g~~~~iRis 381 (406)
T 1kmj_A 304 EYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGK-HHAYDVGSFL-DNYGIAVRTGHHCAMPLMAYYNVPAMCRAS 381 (406)
T ss_dssp HHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETT-CCHHHHHHHH-HHTTEECEEECTTCHHHHHHTTCSCEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEEEECC-CCHHHHHHHH-hhCCcEEEeccccchHHHHhcCCCCeEEEE
Confidence 99999999999999988 7877766 67788887763 3567888888 5899999988753311 125799999
Q ss_pred eCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 458 PTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 458 ~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
++..+|++|+++++++|+++++.+
T Consensus 382 ~~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 382 LAMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eecCCCHHHHHHHHHHHHHHHHhh
Confidence 998889999999999999988764
No 14
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.98 E-value=8e-31 Score=270.50 Aligned_cols=344 Identities=13% Similarity=0.129 Sum_probs=251.0
Q ss_pred CceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEecccccccc
Q psy16848 17 NRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVANDS 90 (514)
Q Consensus 17 g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a~~~ 90 (514)
|+.++|+...+ +..+|++.+++.+++++....++ ....++.+++++++++.++ .+..+++++|++|+..
T Consensus 60 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~-----~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~ 134 (421)
T 3l8a_A 60 NPELLQMWVADMDFLPVPEIKEAIINYGREHIFGYN-----YFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISI 134 (421)
T ss_dssp CTTCEECCSSCCCSCCCHHHHHHHHHHHHHCCSSCB-----CCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHH
T ss_pred CCCeeecccCCCCCCCCHHHHHHHHHHHhcCCcCCC-----CCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHH
Confidence 56677774332 33479999999999986222211 1235778888888888876 2346666777789999
Q ss_pred chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848 91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 170 (514)
Q Consensus 91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
++.++.+ +||.|++..+.|.+...+++..|.+++.++... -++.|
T Consensus 135 a~~~~~~--~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~--------------------~~~~~------------- 179 (421)
T 3l8a_A 135 ALQAFSE--KGDAVLINSPVYYPFARTIRLNDHRLVENSLQI--------------------INGRF------------- 179 (421)
T ss_dssp HHHHHSC--TEEEEEEEESCCHHHHHHHHHTTEEEEEEECEE--------------------ETTEE-------------
T ss_pred HHHHhcC--CCCEEEECCCCcHHHHHHHHHCCCEEEeccccc--------------------cCCCe-------------
Confidence 9998866 999999999999999888877777665443210 00000
Q ss_pred hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848 171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ 250 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ 250 (514)
..|++.+++
T Consensus 180 -----------------------------------------------------------------------~~d~~~le~ 188 (421)
T 3l8a_A 180 -----------------------------------------------------------------------EIDFEQLEK 188 (421)
T ss_dssp -----------------------------------------------------------------------ECCHHHHHH
T ss_pred -----------------------------------------------------------------------eeCHHHHHH
Confidence 015666666
Q ss_pred HHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccc-cccCCCCCCccccCCCccCceEEEcC
Q psy16848 251 VLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAV-GLYGEHGAGIGERDGQLHNMDIISGT 326 (514)
Q Consensus 251 ~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~-g~~g~~~~~~~~~~~~~~~~di~~~S 326 (514)
.+.+ +++++|++++++||+|.+++ +++|+++|++||+++|+||+|+. ++.|....++........+.++++.|
T Consensus 189 ~i~~---~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s 265 (421)
T 3l8a_A 189 DIID---NNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSS 265 (421)
T ss_dssp HHHH---TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEEC
T ss_pred Hhhc---cCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEe
Confidence 6653 35889999999999999976 89999999999999999999993 33343332332222111356788889
Q ss_pred CcccccCCC---eEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848 327 LGKAFGNIG---GYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI 402 (514)
Q Consensus 327 ~sK~lg~~G---G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 402 (514)
+||++|..| |+++++ +++.+.+......+. ..+.+++.++++.++++.. .+++++.+++++++++++.+.|++.
T Consensus 266 ~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~~~-~~~~n~~~~~a~~aal~~~-~~~~~~~~~~~~~~~~~l~~~L~~~ 343 (421)
T 3l8a_A 266 ATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANN-QHEVPTVGMIATQAAFQYG-KPWLEELKTVIEGNIKLVIKELEAK 343 (421)
T ss_dssp SHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTT-CSCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhccCchhheEeEEcCCHHHHHHHHHHHHhcc-cCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999998656 999887 888888876543321 2267888999999988853 4567888999999999999999986
Q ss_pred -CCccccCCCcEEE-EEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848 403 -GFPVEHTPSHIIP-IKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK 479 (514)
Q Consensus 403 -g~~~~~~~~~~~~-i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~ 479 (514)
++.+..+.+.++. +.++. ..+..++.+.|++++||.+.++..|. ..+.+++|++++ ++++++++++++|+++++
T Consensus 344 ~~i~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~~--~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 344 TKIKVMEPEGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFG-KEGKYFARLNVA--TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp CSCEEECCSBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGC-GGGTTEEEEECC--SCHHHHHHHHHHHHHHC-
T ss_pred CCceEeCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhC-CCCCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 7877777766544 77764 24567888999756799999988643 345789999998 689999999999998764
No 15
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.98 E-value=2.2e-30 Score=260.55 Aligned_cols=330 Identities=13% Similarity=0.057 Sum_probs=251.7
Q ss_pred cCCceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC--CcEEEEecccccccc
Q psy16848 15 KSNRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK--EAGLVFTSCYVANDS 90 (514)
Q Consensus 15 ~~g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~i~~~sGt~a~~~ 90 (514)
.+|+.++||.++. +..+|++.+++.+++... .. + ......+++++++++++. +..++++||++|+..
T Consensus 13 ~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~-------y-~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~ 83 (354)
T 3ly1_A 13 PSTDNPIRINFNENPLGMSPKAQAAARDAVVKA-NR-------Y-AKNEILMLGNKLAAHHQVEAPSILLTAGSSEGIRA 83 (354)
T ss_dssp CCSSSCEECSSCCCSSCCCHHHHHHHHHTGGGT-TS-------C-CHHHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHH
T ss_pred CCCCceEEccCCCCCCCCCHHHHHHHHHHHhhC-cC-------C-CCCchHHHHHHHHHHhCCChHHEEEeCChHHHHHH
Confidence 4677899997543 335789999998887641 11 1 134568999999999984 456777788899999
Q ss_pred chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848 91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 170 (514)
Q Consensus 91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
++.++.+ +||.|+++.+.|.+....++..|.+++.++.+..
T Consensus 84 ~~~~l~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~------------------------------------- 124 (354)
T 3ly1_A 84 AIEAYAS--LEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLDN------------------------------------- 124 (354)
T ss_dssp HHHHHCC--TTCEEEEESSSCTHHHHHHHHTTCEEEEECCCTT-------------------------------------
T ss_pred HHHHHhC--CCCeEEECCCCchHHHHHHHHcCCEEEEecCCCC-------------------------------------
Confidence 9988866 9999999999999998888888877776654300
Q ss_pred hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848 171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ 250 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ 250 (514)
. .-|.+.+++
T Consensus 125 -------------------------~---------------------------------------------~~d~~~l~~ 134 (354)
T 3ly1_A 125 -------------------------W---------------------------------------------AFDIEGLKA 134 (354)
T ss_dssp -------------------------S---------------------------------------------CCCHHHHHH
T ss_pred -------------------------C---------------------------------------------CCCHHHHHH
Confidence 0 014455555
Q ss_pred HHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHH--cCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc
Q psy16848 251 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ--HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG 328 (514)
Q Consensus 251 ~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~--~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s 328 (514)
.+++. ++++++++++++||+|.++|.+++.++++. +|+++|+||+|+.+..+....+.........+.+++++|+|
T Consensus 135 ~l~~~--~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 212 (354)
T 3ly1_A 135 AVAAY--SGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFS 212 (354)
T ss_dssp HHHTC--SSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESS
T ss_pred HhccC--CCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeCh
Confidence 55431 357899999999999999998888887777 99999999999954433222122111111116789999999
Q ss_pred ccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCc
Q psy16848 329 KAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFP 405 (514)
Q Consensus 329 K~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 405 (514)
|++|.+| |++++++++++.+......+ +.++..++++.++++.. .++++.+++++++++++.+.|++.++.
T Consensus 213 K~~g~~G~r~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~ 286 (354)
T 3ly1_A 213 KIHAMAGMRVGYAVAHPTVIALMGRYVAGE----KINFSGVDAALASMNDS--AFITYSKKSNDVSRQILLKALEDLKLP 286 (354)
T ss_dssp STTCCGGGCCEEEECCHHHHHHHGGGTTCS----CCCHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hhccChhhhheeeecCHHHHHHHHHhcCCC----CCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 9998656 99999999999998766553 67888888888888732 567788999999999999999988888
Q ss_pred cccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848 406 VEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS 480 (514)
Q Consensus 406 ~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~ 480 (514)
+.++.+.++++.++. +..++.+.|. ++||.+. +.++. ..+++|++++ +++|+++++++|++++++
T Consensus 287 ~~~~~~~~~~~~~~~--~~~~~~~~l~-~~gi~v~-g~~~~---~~~~iRis~~---~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 287 YLPSEGNFVFHQLVV--PLKDYQTHMA-DAGVLIG-RAFPP---ADNWCRISLG---TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp BCCCCSSEEEEECSS--CHHHHHHHHH-HTTEECC-CCCTT---CTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred ECCCCceEEEEECCC--CHHHHHHHHH-HCCEEEe-ecCCC---CCCEEEEEcC---CHHHHHHHHHHHHHHHHh
Confidence 777778888888875 4788999996 8999998 65532 4679999987 899999999999998875
No 16
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.98 E-value=2.5e-30 Score=264.04 Aligned_cols=342 Identities=14% Similarity=0.097 Sum_probs=248.8
Q ss_pred hcCCceeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccccc
Q psy16848 14 HKSNRVTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVA 87 (514)
Q Consensus 14 ~~~g~~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a 87 (514)
..+|+.++||.++.. ..+|++.+++.+++..... ++....|..++.+++++.+.+.+| .+.+++++||++|
T Consensus 27 ~~~g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~---~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~a 103 (391)
T 3h14_A 27 EEAGRRIIHMEVGQPGTGAPRGAVEALAKSLETDAL---GYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGG 103 (391)
T ss_dssp HHTTCCCEECCCSSCSSCSCHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHH
T ss_pred HhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCC---CCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHH
Confidence 347888999976543 2378899999988865211 111222344555556655555544 3456777888899
Q ss_pred cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848 88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK 167 (514)
Q Consensus 88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
+..++.++.. +||.|+++.+.|.+....++..|.+++.++.+..
T Consensus 104 l~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~---------------------------------- 147 (391)
T 3h14_A 104 FLLAFTALFD--SGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPE---------------------------------- 147 (391)
T ss_dssp HHHHHHHHCC--TTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGG----------------------------------
T ss_pred HHHHHHHhcC--CCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcc----------------------------------
Confidence 9999988866 9999999999999998888777777665544210
Q ss_pred HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848 168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH 247 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~ 247 (514)
.++..
T Consensus 148 ---------------------------------------------------------------------------~~~~~ 152 (391)
T 3h14_A 148 ---------------------------------------------------------------------------NRLQP 152 (391)
T ss_dssp ---------------------------------------------------------------------------GTTSC
T ss_pred ---------------------------------------------------------------------------cCCCC
Confidence 01111
Q ss_pred HHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEE
Q psy16848 248 LTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS 324 (514)
Q Consensus 248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~ 324 (514)
+.+.+++. +++++++++++||||.++| +++|.++|++||+++|+||+|+.+..+....+.... .+.++++
T Consensus 153 d~~~l~~~---~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~----~~~~i~~ 225 (391)
T 3h14_A 153 VPADFAGL---DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALEL----TDECYVI 225 (391)
T ss_dssp CHHHHTTS---CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT----CSSSEEE
T ss_pred CHHHHHhc---CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhc----CCCEEEE
Confidence 12233332 5789999999999999999 899999999999999999999954443322222221 3567999
Q ss_pred cCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848 325 GTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ 401 (514)
Q Consensus 325 ~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 401 (514)
+|+||.+|.+| ||+++++++++.+......+ +.+.+++.+.++.++++ ..+.+++.+++++++++++.+.|++
T Consensus 226 ~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~ 301 (391)
T 3h14_A 226 NSFSKYFSMTGWRVGWMVVPEDQVRVVERIAQNM--FICAPHASQVAALAALD--CDAELQANLDVYKANRKLMLERLPK 301 (391)
T ss_dssp EESSSTTCCTTSCCEEEECCGGGHHHHHHHHHHT--TCCCCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EechhccCCccceeEEEEeCHHHHHHHHHHHhhh--ccCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998657 99999999998887765544 44678888888888887 4566788899999999999999998
Q ss_pred CCCcc-ccCCC-cEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848 402 IGFPV-EHTPS-HIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW 478 (514)
Q Consensus 402 ~g~~~-~~~~~-~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l 478 (514)
.++.. ..+.+ .++++.++. ..+..++.+.|++++||.+.++..|..+.+.+++|++++. +++++++++++|++++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~~ 379 (391)
T 3h14_A 302 AGFTRIAPPDGAFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR--ATADIEEGLDRLEAFM 379 (391)
T ss_dssp HTCCCBCCCCBTTEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS--CHHHHHHHHHHHHHHH
T ss_pred cCCCcccCCCeeEEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHH
Confidence 86554 34444 466677765 4567889999874569999999876654557899999984 8899999999999999
Q ss_pred HHcC
Q psy16848 479 KSLD 482 (514)
Q Consensus 479 ~~~~ 482 (514)
++..
T Consensus 380 ~~~~ 383 (391)
T 3h14_A 380 QARG 383 (391)
T ss_dssp HHC-
T ss_pred HHhc
Confidence 8764
No 17
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.98 E-value=4.1e-30 Score=262.10 Aligned_cols=345 Identities=18% Similarity=0.185 Sum_probs=250.6
Q ss_pred ceeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCc-EEEEecccccccc
Q psy16848 18 RVTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEA-GLVFTSCYVANDS 90 (514)
Q Consensus 18 ~~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~-~i~~~sGt~a~~~ 90 (514)
..++||..+.. ..+|++.+++.++++.... .+....|..++.+++.+.+.+.+| .+. .++++||++|+..
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~---~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~ 102 (389)
T 1gd9_A 26 KDVISLGIGEPDFDTPQHIKEYAKEALDKGLT---HYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM 102 (389)
T ss_dssp SSCEECCCCSCSSCCCHHHHHHHHHHHHTTCC---SCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred cCeEecCCCCCCCCCCHHHHHHHHHHHhCCCC---CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHH
Confidence 46789865443 3478999999999876221 111222445555555555555546 346 7777888999999
Q ss_pred chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848 91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 170 (514)
Q Consensus 91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
++.++.. +||.|+++.+.|.+...+++..|.+++.++....+
T Consensus 103 ~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~------------------------------------ 144 (389)
T 1gd9_A 103 GLSAFLK--DGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEED------------------------------------ 144 (389)
T ss_dssp HHTTTCC--TTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGG------------------------------------
T ss_pred HHHHhCC--CCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCcc------------------------------------
Confidence 9988865 99999999999999887777777766554431000
Q ss_pred hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848 171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ 250 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ 250 (514)
+. .-|.+.+++
T Consensus 145 ------------------------~~---------------------------------------------~~d~~~l~~ 155 (389)
T 1gd9_A 145 ------------------------EF---------------------------------------------RLNVDELKK 155 (389)
T ss_dssp ------------------------TT---------------------------------------------CCCHHHHHH
T ss_pred ------------------------CC---------------------------------------------CCCHHHHHH
Confidence 00 013444544
Q ss_pred HHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccC-CCCCCccccCCCccCceEEEcC
Q psy16848 251 VLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYG-EHGAGIGERDGQLHNMDIISGT 326 (514)
Q Consensus 251 ~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g-~~~~~~~~~~~~~~~~di~~~S 326 (514)
.++ ++++++++++++||||.++| +++|.++|++||+++|+||+|+.+..+ ....++....+ ..+.|++++|
T Consensus 156 ~l~----~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s 230 (389)
T 1gd9_A 156 YVT----DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDG-MFERTITVNG 230 (389)
T ss_dssp HCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTT-CGGGEEEEEE
T ss_pred hcC----cCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccC-CCCCEEEEec
Confidence 443 35789999999999999997 899999999999999999999965543 21223333222 1467999999
Q ss_pred CcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHHHHHHhC
Q psy16848 327 LGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSS-QEGVELRAKHQDIVAYLRNELIQI 402 (514)
Q Consensus 327 ~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~ 402 (514)
+||++|.+| |++++++++++.+....... +.+.++..+.++.++++.... .++++++++++++++++.+.|++.
T Consensus 231 ~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 308 (389)
T 1gd9_A 231 FSKTFAMTGWRLGFVAAPSWIIERMVKFQMYN--ATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM 308 (389)
T ss_dssp STTTTTCGGGCCEEEECCHHHHHHHHHHHTTT--TCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChhhcCCcccceEEEEECHHHHHHHHHHHhhh--ccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999998657 99999999999887765544 346678888888888874321 156788899999999999999998
Q ss_pred CCccccCCCc-EEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848 403 GFPVEHTPSH-IIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS 480 (514)
Q Consensus 403 g~~~~~~~~~-~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~ 480 (514)
|+++..+.++ ++++.++. +.+..++.+.|++++||.+.++..+. ..+.+++|++++. +++++++++++|++++++
T Consensus 309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~-~~~~~~iRi~~~~--~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 309 GLPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFG-KAGEGYVRISYAT--AYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp TCCCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGC-GGGTTBEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred CCeecCCCeeeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhC-CCCCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 8877666655 45666653 34577899998558999999988644 2346799999984 899999999999999887
Q ss_pred cC
Q psy16848 481 LD 482 (514)
Q Consensus 481 ~~ 482 (514)
.+
T Consensus 386 ~~ 387 (389)
T 1gd9_A 386 RK 387 (389)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 18
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.98 E-value=1.1e-30 Score=265.01 Aligned_cols=339 Identities=12% Similarity=0.107 Sum_probs=247.9
Q ss_pred CCceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccccccc
Q psy16848 16 SNRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVAND 89 (514)
Q Consensus 16 ~g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a~~ 89 (514)
+|+.++||.+++ +..+|++.+++.+++.+....+ .. .+ .++.+++.+.+.+.+| .+..++++||++|+.
T Consensus 21 ~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~y---~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~ 95 (377)
T 3fdb_A 21 YGQGVLPLWVAESDFSTCPAVLQAITDAVQREAFGY---QP-DG-SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLY 95 (377)
T ss_dssp SCTTSEECCSSCCCSCCCHHHHHHHHHHHHTTCCSS---CC-SS-CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHH
T ss_pred cCCCeeeecccCCCCCCCHHHHHHHHHHHHcCCCCC---CC-CC-HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHH
Confidence 566788886543 2347899999999998622221 11 23 4566666666665543 346777788889999
Q ss_pred cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848 90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL 169 (514)
Q Consensus 90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
.++.++.+ +||.|+++.+.|.+....++..|.+++.++.++
T Consensus 96 ~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~------------------------------------- 136 (377)
T 3fdb_A 96 IAIDHFTP--AQSKVIVPTPAYPPFFHLLSATQREGIFIDATG------------------------------------- 136 (377)
T ss_dssp HHHHHHSC--TTCCEEEEESCCTHHHHHHHHHTCCEEEEECTT-------------------------------------
T ss_pred HHHHHhcC--CCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCC-------------------------------------
Confidence 99988866 999999999999998888777777776655430
Q ss_pred hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848 170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT 249 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~ 249 (514)
..|.+.++
T Consensus 137 ------------------------------------------------------------------------~~d~~~l~ 144 (377)
T 3fdb_A 137 ------------------------------------------------------------------------GINLHDVE 144 (377)
T ss_dssp ------------------------------------------------------------------------SCCHHHHH
T ss_pred ------------------------------------------------------------------------CCCHHHHH
Confidence 01455555
Q ss_pred HHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCC-ccCceEEEc
Q psy16848 250 QVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQ-LHNMDIISG 325 (514)
Q Consensus 250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~-~~~~di~~~ 325 (514)
+.+++ +++++++++++||||.++| +++|.++|++||+++|+||+|+.+..+.. ....+.... ..+.+++++
T Consensus 145 ~~l~~----~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~~i~~~ 219 (377)
T 3fdb_A 145 KGFQA----GARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQ-HTVAAGVSDTAASVCITIT 219 (377)
T ss_dssp HHHHT----TCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSC-CCCGGGSCHHHHHHEEEEE
T ss_pred HHhcc----CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCC-CCcccHHHccCCCcEEEEE
Confidence 55543 3679999999999999998 68888889999999999999995433210 011122221 135678999
Q ss_pred CCcccccCCC---eEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848 326 TLGKAFGNIG---GYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ 401 (514)
Q Consensus 326 S~sK~lg~~G---G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 401 (514)
|+||.+|.+| ||++. ++++++.+....... +.+.+++.++++.++++.. .+++++.+++++++++++.+.|++
T Consensus 220 s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 296 (377)
T 3fdb_A 220 APSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVI--KDGASTLGLIAAEAAYRYG-TDFLNQEVAYLKNNHDFLLHEIPK 296 (377)
T ss_dssp CSTTTTTCGGGCCEEEECCSHHHHHHHHHSCHHH--HCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eChHhccCcchhheEEEeCCHHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998656 87765 788888887654433 3477888998888888854 456778899999999999999998
Q ss_pred C--CCccccCCCcEE-EEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848 402 I--GFPVEHTPSHII-PIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW 478 (514)
Q Consensus 402 ~--g~~~~~~~~~~~-~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l 478 (514)
. ++.+..+.++++ ++.++......++.+.+++++||.+.++..|... +.+++|++++ .+++++++++++|++++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~-~~~~~Ris~~--~~~e~i~~~l~~l~~~l 373 (377)
T 3fdb_A 297 RIPGAKITPMQATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGED-GTGFCRLNFA--TSREVLEEAIDRMAKAV 373 (377)
T ss_dssp HSTTCEECCCSBCSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGG-GTTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred hCCCceEecCCeeEEEEEECcccCCCHHHHHHHHHhCCEEecCChhccCC-CCCEEEEEeC--CCHHHHHHHHHHHHHHH
Confidence 4 888777766644 6887763223577888875569999998865432 4689999998 48999999999999988
Q ss_pred HHc
Q psy16848 479 KSL 481 (514)
Q Consensus 479 ~~~ 481 (514)
++.
T Consensus 374 ~~~ 376 (377)
T 3fdb_A 374 SHH 376 (377)
T ss_dssp TTC
T ss_pred hhc
Confidence 653
No 19
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.97 E-value=3.8e-30 Score=261.57 Aligned_cols=342 Identities=14% Similarity=0.095 Sum_probs=249.8
Q ss_pred CceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEecccccccc
Q psy16848 17 NRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVANDS 90 (514)
Q Consensus 17 g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a~~~ 90 (514)
++.++||..++ +..+|++.+++.+++.+....++. ...++.+++++.+++.+| .+..+++++|++++..
T Consensus 23 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-----~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~ 97 (383)
T 3kax_A 23 NEELIHAWIADMDFEVPQPIQTALKKRIEHPIFGYTL-----PPENIGDIICNWTKKQYNWDIQKEWIVFSAGIVPALST 97 (383)
T ss_dssp SSCCEECCCSSCSSCCCHHHHHHHHHHHHSCCCCCCC-----CCTTHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHH
T ss_pred CCCeeecccccCCCCCCHHHHHHHHHHHhcCCCCCCC-----CCHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHH
Confidence 46778886443 224889999999999862222211 146788999999999877 3456777778888989
Q ss_pred chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848 91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 170 (514)
Q Consensus 91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
++.++.. +||.|+++.++|.+....++..|.+++.++.... ++.|
T Consensus 98 ~~~~l~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------------------~~~~------------- 142 (383)
T 3kax_A 98 SIQAFTK--ENESVLVQPPIYPPFFEMVTTNNRQLCVSPLQKQ--------------------NDTY------------- 142 (383)
T ss_dssp HHHHHCC--TTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEE--------------------TTEE-------------
T ss_pred HHHHhCC--CCCEEEEcCCCcHHHHHHHHHcCCEEEeccceec--------------------CCcE-------------
Confidence 9988866 9999999999999999888888887776543100 0000
Q ss_pred hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848 171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ 250 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ 250 (514)
..|.+.+++
T Consensus 143 -----------------------------------------------------------------------~~d~~~l~~ 151 (383)
T 3kax_A 143 -----------------------------------------------------------------------AIDFEHLEK 151 (383)
T ss_dssp -----------------------------------------------------------------------ECCHHHHHH
T ss_pred -----------------------------------------------------------------------EEcHHHHHH
Confidence 014555555
Q ss_pred HHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEcC
Q psy16848 251 VLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISGT 326 (514)
Q Consensus 251 ~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~S 326 (514)
.+ +++++++++++++||||.++| +++|.++|++||+++|+||+|+.+.. |....++........+.+++++|
T Consensus 152 ~l----~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s 227 (383)
T 3kax_A 152 QF----QQGVKLMLLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAARTITCMA 227 (383)
T ss_dssp HH----TTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEEC
T ss_pred Hh----CcCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCceeHhhcCccccCcEEEEEE
Confidence 55 345789999999999999998 67777779999999999999995433 32222222211100256799999
Q ss_pred CcccccCCC---eEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848 327 LGKAFGNIG---GYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI 402 (514)
Q Consensus 327 ~sK~lg~~G---G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 402 (514)
+||.+|.+| |++++ ++++.+.+......+. ..+.++..++++.++++.. .+.+++.+++++++++++.+.|++.
T Consensus 228 ~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~ 305 (383)
T 3kax_A 228 PSKTFNIAGLQASIIIIPNEKLRQAFTSIQYRQG-FHGLNIFAYTAMQSAYTEC-NDWLNEIRFYIEDNAKFACEYIKDH 305 (383)
T ss_dssp SHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTT-CCCCCHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhccCcchhheEEEeCCHHHHHHHHHHHhhcc-cCCCCHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999998656 99987 6888888876544331 1267888888888888743 3457788899999999999999984
Q ss_pred --CCccccCCCcEE-EEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848 403 --GFPVEHTPSHII-PIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW 478 (514)
Q Consensus 403 --g~~~~~~~~~~~-~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l 478 (514)
++.+..+.++++ ++.++. ..+..++.+.|++++||.+.++..+.. .+.+++|++++ .+++++++++++|++++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-~~~~~iRi~~~--~~~~~i~~~l~~l~~~l 382 (383)
T 3kax_A 306 IPTLSVMKPEGSFLLWIDCSALNLSQDERTKLLEEKGKIIVEPGEKYGL-GGEEHIGINIG--CPRSVLEEILNRLRHTF 382 (383)
T ss_dssp CTTCEECCCSBSSEEEEECGGGCCCHHHHHHHHHHTSCEECEESGGGCT-TCTTEEEEECS--SCHHHHHHHHHHHHHHH
T ss_pred CCCceEecCCceEEEEEEccccCCCHHHHHHHHHhhCCEEeECchhhcC-CCCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 888777766644 477764 246788999996578999999886543 34789999998 58999999999999875
No 20
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.97 E-value=1.9e-30 Score=263.46 Aligned_cols=336 Identities=14% Similarity=0.079 Sum_probs=245.5
Q ss_pred cCCceeeecccCCCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc----CCC-----cEEEEec
Q psy16848 15 KSNRVTCRLSSVQYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH----QKE-----AGLVFTS 83 (514)
Q Consensus 15 ~~g~~~~d~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-----~~i~~~s 83 (514)
.+|+.++||.++.+. .+|.+.+++.+++++.. ...++......++++.+++++ |.+ ..+++++
T Consensus 22 ~~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~------~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g 95 (376)
T 2dou_A 22 ERGVGLIDLSIGSTDLPPPEAPLKALAEALNDPT------TYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIG 95 (376)
T ss_dssp HTTCCCEECSSCCCCCCCCHHHHHHHHHHTTCGG------GSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESS
T ss_pred ccCCCEEeccCCCCCCCCCHHHHHHHHHHHhCCC------cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCC
Confidence 467789999766543 37889999888876410 111222234566777777765 753 4566666
Q ss_pred cccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCc
Q psy16848 84 CYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAI 163 (514)
Q Consensus 84 Gt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
|++++..++.++.. +||.|+++.+.|.+....++..|.+++.++..+ .|
T Consensus 96 ~~~a~~~~~~~l~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-----------------------~~------ 144 (376)
T 2dou_A 96 SQEGLAHLLLALTE--PEDLLLLPEVAYPSYFGAARVASLRTFLIPLRE-----------------------DG------ 144 (376)
T ss_dssp HHHHHHHHHHHHCC--TTCEEEEESSCCHHHHHHHHHTTCEEEEECBCT-----------------------TS------
T ss_pred cHHHHHHHHHHhcC--CCCEEEECCCCcHhHHHHHHHcCCEEEEeeCCC-----------------------CC------
Confidence 67888888888865 999999999999999888877777766543200 00
Q ss_pred cchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC
Q psy16848 164 CPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN 243 (514)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~ 243 (514)
..
T Consensus 145 ------------------------------------------------------------------------------~~ 146 (376)
T 2dou_A 145 ------------------------------------------------------------------------------LA 146 (376)
T ss_dssp ------------------------------------------------------------------------------SB
T ss_pred ------------------------------------------------------------------------------CC
Confidence 01
Q ss_pred ChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCc
Q psy16848 244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM 320 (514)
Q Consensus 244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~ 320 (514)
|.+.+++.+. ++++++++++++||||.++| +++|.++|++||+++|+||+|+.+..+....++....+ ..+.
T Consensus 147 d~~~l~~~l~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~~~ 221 (376)
T 2dou_A 147 DLKAVPEGVW----REAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPG-AKER 221 (376)
T ss_dssp CGGGSCHHHH----HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTT-GGGT
T ss_pred CHHHHHHhhc----cCceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCC-CCCc
Confidence 4445555553 24789999999999999998 78999999999999999999995544322222222222 2357
Q ss_pred eEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q psy16848 321 DIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRN 397 (514)
Q Consensus 321 di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 397 (514)
+++++|+||++|.+| ||+++++++++.+......+ +.+.++..++++.++++.. ..++++.+++++++++++.+
T Consensus 222 ~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~ 298 (376)
T 2dou_A 222 VVELFSLSKSYNLAGFRLGFALGSEEALARLERVKGVI--DFNQYAGVLRMGVEALKTP-KEVVRGYARVYRERALGMAE 298 (376)
T ss_dssp EEEEEEHHHHHTCGGGCCEEEEECHHHHHHHHHHHHHH--CCCSCHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecchhhcCChhheeEEEecCHHHHHHHHHHHHhc--ccCCCHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 899999999998656 99999999999887665444 3356788888888888643 45677888899999999999
Q ss_pred HHHhCCCccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848 398 ELIQIGFPVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA 476 (514)
Q Consensus 398 ~L~~~g~~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~ 476 (514)
.|++. +.+..+.++ ++++.+++..+..++.+.|+ ++||.+.++..+.. .+.+++|++++. +++++++++++|++
T Consensus 299 ~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~g~~f~~-~~~~~~Ris~~~--~~~~i~~~l~~l~~ 373 (376)
T 2dou_A 299 ALKGV-LSLLPPRATMYLWGRLPEGVDDLEFGLRLV-ERGVALAPGRGFGP-GGKGFVRIALVR--PLEELLEAAKRIRE 373 (376)
T ss_dssp HHTTT-SEECCCCBSSEEEEECCTTCCHHHHHHHHH-HTTEECEEGGGGCG-GGTTEEEEECCS--CHHHHHHHHHHHHH
T ss_pred HHHHh-cCccCCCeeEEEEEECCCCCCHHHHHHHHH-HCCEEEcCchhhCC-CCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 99987 666655544 67788876556778999996 77999999876542 246799999984 89999999999987
Q ss_pred HH
Q psy16848 477 VW 478 (514)
Q Consensus 477 ~l 478 (514)
++
T Consensus 374 ~l 375 (376)
T 2dou_A 374 AL 375 (376)
T ss_dssp TC
T ss_pred Hh
Confidence 54
No 21
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.97 E-value=3.9e-30 Score=267.38 Aligned_cols=348 Identities=17% Similarity=0.078 Sum_probs=247.6
Q ss_pred CceeeecccCCC----CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC---CcEEEEeccccccc
Q psy16848 17 NRVTCRLSSVQY----KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK---EAGLVFTSCYVAND 89 (514)
Q Consensus 17 g~~~~d~~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~i~~~sGt~a~~ 89 (514)
+..+|||+++.. +.++++.+++.++++..+.....+....|..++.+++.+.+.+.+|. +.++++++|++|+.
T Consensus 75 ~~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~ 154 (448)
T 3aow_A 75 TSDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALD 154 (448)
T ss_dssp TSSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHH
T ss_pred CCCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHH
Confidence 345799966443 24678999999988762210011111223444444454444444475 34565666678888
Q ss_pred cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848 90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL 169 (514)
Q Consensus 90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
.++.++.. +||.|+++.++|.+....++..|.+++.++.++ +
T Consensus 155 ~~~~~l~~--~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~----------------------------------- 196 (448)
T 3aow_A 155 LIGRVFLN--PGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDD-E----------------------------------- 196 (448)
T ss_dssp HHHHHHCC--TTCEEEEEESCCHHHHHHHHTTCCEEEEEEEET-T-----------------------------------
T ss_pred HHHHHHcC--CCCEEEEeCCChHHHHHHHHHcCCEEEEeccCC-C-----------------------------------
Confidence 88888865 999999999999999988888887776554310 0
Q ss_pred hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848 170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT 249 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~ 249 (514)
..|.+.++
T Consensus 197 ------------------------------------------------------------------------g~d~~~L~ 204 (448)
T 3aow_A 197 ------------------------------------------------------------------------GMKVEILE 204 (448)
T ss_dssp ------------------------------------------------------------------------EECHHHHH
T ss_pred ------------------------------------------------------------------------CCCHHHHH
Confidence 01455555
Q ss_pred HHHhhc--cCCCceEE-EEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceE
Q psy16848 250 QVLENM--DVKIPKLV-AFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDI 322 (514)
Q Consensus 250 ~~l~~~--~~~~~~~v-v~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di 322 (514)
+.++.. ..+++++| ++++++||||.+++ +++|.++|++||+++|+||+|+.+.+ +....++.... ..+.++
T Consensus 205 ~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~--~~~~vi 282 (448)
T 3aow_A 205 EKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALD--NEGRVI 282 (448)
T ss_dssp HHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGC--TTSCEE
T ss_pred HHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcC--CCCCEE
Confidence 555411 11257886 57899999999998 68999999999999999999996544 22222222222 235789
Q ss_pred EEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHHHH
Q psy16848 323 ISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRIL-SSQEGVELRAKHQDIVAYLRNE 398 (514)
Q Consensus 323 ~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~ 398 (514)
+++||||+++ +| ||+++++++++.+....... +.+.+++.+.++.++|+.. ...+++++++.++++++++.+.
T Consensus 283 ~~~S~SK~~~-~GlriG~v~~~~~l~~~l~~~~~~~--~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~ 359 (448)
T 3aow_A 283 YLGTFSKILA-PGFRIGWMVGDPGIIRKMEIAKQST--DLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEA 359 (448)
T ss_dssp EEEESTTTTC-GGGCCEEEEECHHHHHHHHHHHHHH--HSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEccchhhcc-ccccEEEEEeCHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 57 99999999999887655443 3356888888888888742 1345677888899999999999
Q ss_pred HHhC---CCccccCC-CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC-CCCcEEEEEeCCCCCHHHHHHHHHH
Q psy16848 399 LIQI---GFPVEHTP-SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP-VGEEKIRLAPTPFHTREMIDKFVTD 473 (514)
Q Consensus 399 L~~~---g~~~~~~~-~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~-~~~~~iRl~~~~~~t~e~id~~~~~ 473 (514)
|++. ++.+..+. +.++++.++...+..++.+.|+ ++||.+.++..+... .+.+++|++++. .+++++++++++
T Consensus 360 L~~~~~~g~~~~~p~~g~~~~v~~~~~~~~~~l~~~l~-~~gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~~~~~~ 437 (448)
T 3aow_A 360 LEEFMPEGVKWTKPEGGMFIWVTLPDGIDSKKMLERAI-KKGVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIMEGIKR 437 (448)
T ss_dssp HHHHCCTTCEECCCSBSSEEEEECSTTCCHHHHHHHHH-HTTEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHHHHHHH
T ss_pred HHHhCCCCeEEeCCCccEEEEEEcCCCCCHHHHHHHHH-HCCcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHHHHHHH
Confidence 9874 67765554 5577888876556788999996 779999998865432 346799999985 489999999999
Q ss_pred HHHHHHHc
Q psy16848 474 LLAVWKSL 481 (514)
Q Consensus 474 l~~~l~~~ 481 (514)
|++++++.
T Consensus 438 L~~~l~~~ 445 (448)
T 3aow_A 438 LAETIKEE 445 (448)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 22
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.97 E-value=4.7e-30 Score=261.64 Aligned_cols=345 Identities=16% Similarity=0.187 Sum_probs=248.4
Q ss_pred cCCceeeecccCCCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEecccccc
Q psy16848 15 KSNRVTCRLSSVQYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSCYVAN 88 (514)
Q Consensus 15 ~~g~~~~d~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sGt~a~ 88 (514)
.+|+.++||.++... .+|.+.+++.++++... ..+....|..++.+++.+++.+.+|. +..++++||++|+
T Consensus 27 ~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~---~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~ 103 (388)
T 1j32_A 27 AEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGK---TRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSI 103 (388)
T ss_dssp TTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTC---CSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred hcCCCEEECCCCCCCCCCCHHHHHHHHHHHhcCC---CCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHH
Confidence 467789999765542 47889999999887521 11222234556666666666665553 3466667778999
Q ss_pred ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848 89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE 168 (514)
Q Consensus 89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
..++.++.. +||.|+++.+.|.+....++..|.+++.++.+..+
T Consensus 104 ~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~---------------------------------- 147 (388)
T 1j32_A 104 FNLMLAMIE--PGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVET---------------------------------- 147 (388)
T ss_dssp HHHHHHHCC--TTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGG----------------------------------
T ss_pred HHHHHHhcC--CCCEEEEcCCCChhHHHHHHHcCCEEEEecCCccc----------------------------------
Confidence 999988865 99999999999999888777777766655431000
Q ss_pred HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848 169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL 248 (514)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l 248 (514)
+. ..|.+.+
T Consensus 148 --------------------------~~---------------------------------------------~~d~~~l 156 (388)
T 1j32_A 148 --------------------------QF---------------------------------------------KVSPEQI 156 (388)
T ss_dssp --------------------------TT---------------------------------------------CCCHHHH
T ss_pred --------------------------CC---------------------------------------------CCCHHHH
Confidence 00 0134444
Q ss_pred HHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC-CCCCccccCCCccCceEEE
Q psy16848 249 TQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE-HGAGIGERDGQLHNMDIIS 324 (514)
Q Consensus 249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~-~~~~~~~~~~~~~~~di~~ 324 (514)
++.+ +++++++++++++||||.++| +++|.++|++||+++|+||+|+.+..+. ...++........+.|+++
T Consensus 157 ~~~l----~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (388)
T 1j32_A 157 RQAI----TPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVC 232 (388)
T ss_dssp HHHC----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEE
T ss_pred HHhc----CcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEE
Confidence 4444 346889999999999999987 8999999999999999999999544322 1112221111013578999
Q ss_pred cCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848 325 GTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ 401 (514)
Q Consensus 325 ~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 401 (514)
+|+||++|.+| |++++++++++.+....... +.+.++..+.++.++++.. .+++++.+++++++++++.+.|++
T Consensus 233 ~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 309 (388)
T 1j32_A 233 SGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHS--TSNVCTFAQYGAIAAYENS-QDCVQEMLAAFAERRRYMLDALNA 309 (388)
T ss_dssp EESTTTTTCTTTCCEEEECCHHHHHHHHHHHHTT--TCSCCHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eechhccCCcccceEEEEeCHHHHHHHHHHHhhc--ccCCCHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999998667 99999999988887654443 3366788888888888743 345778899999999999999999
Q ss_pred C-CCccccCCCc-EEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848 402 I-GFPVEHTPSH-IIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW 478 (514)
Q Consensus 402 ~-g~~~~~~~~~-~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l 478 (514)
. ++.+..+.++ ++++.++. +.+..++.+.|++++||.+.++..+.. ++++|++++ ++++++++++++|++++
T Consensus 310 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~--~~~~~i~~~~~~l~~~l 384 (388)
T 1j32_A 310 MPGLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGA---DDCIRLSYA--TDLDTIKRGMERLEKFL 384 (388)
T ss_dssp CTTCBCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTC---TTBEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred CCCCcccCCCeeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhCC---CCcEEEEec--CCHHHHHHHHHHHHHHH
Confidence 8 8877666655 44455543 235778999996447999999875432 468999997 68999999999999988
Q ss_pred HHc
Q psy16848 479 KSL 481 (514)
Q Consensus 479 ~~~ 481 (514)
+++
T Consensus 385 ~~~ 387 (388)
T 1j32_A 385 HGI 387 (388)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 23
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.97 E-value=4e-30 Score=259.90 Aligned_cols=323 Identities=14% Similarity=0.092 Sum_probs=246.4
Q ss_pred ceeeecccCC-CC-CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC--CcEEEEeccccccccchh
Q psy16848 18 RVTCRLSSVQ-YK-VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK--EAGLVFTSCYVANDSTLF 93 (514)
Q Consensus 18 ~~~~d~~~~~-~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~i~~~sGt~a~~~~l~ 93 (514)
+.++||+++. .+ .+|++.+++.+++... ..+ +... ..++++++++++|. +.+++++||++++..++.
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~y-------~~~~-~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~ 100 (365)
T 3get_A 30 KEVIKLASNENPFGTPPKAIECLRQNANKA-HLY-------PDDS-MIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIH 100 (365)
T ss_dssp SCCEECSSCCCTTCSCHHHHHHHHHHGGGT-TSC-------CCTT-CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHH
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHhh-ccC-------CCCC-hHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH
Confidence 5689997543 33 4789999999988641 111 1111 15889999999984 456777788889999988
Q ss_pred hccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhh
Q psy16848 94 TLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVS 173 (514)
Q Consensus 94 ~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (514)
++.. +||.|+++.++|.+....++..|.+++.++..
T Consensus 101 ~l~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~------------------------------------------ 136 (365)
T 3get_A 101 SKLN--SKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSI------------------------------------------ 136 (365)
T ss_dssp HHCC--TTCEEEECSSCCTHHHHHHHHHTCEEEECSSS------------------------------------------
T ss_pred HHhC--CCCEEEEeCCChHHHHHHHHHcCCEEEEEecC------------------------------------------
Confidence 8866 99999999999998887777666666554420
Q ss_pred hhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHh
Q psy16848 174 HQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLE 253 (514)
Q Consensus 174 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~ 253 (514)
..++ .+.+.++
T Consensus 137 --------------------------------------------------------------------~~~~-~d~~~l~ 147 (365)
T 3get_A 137 --------------------------------------------------------------------THNL-DEFKKLY 147 (365)
T ss_dssp --------------------------------------------------------------------SCCH-HHHHHHH
T ss_pred --------------------------------------------------------------------CCCC-CCHHHHH
Confidence 1223 3334444
Q ss_pred hccCCCceEEEEecCCCCCccccCHHHHHHHHH--HcCCEEEEeccccccc---cCCCCCCccccCCCccCceEEEcCCc
Q psy16848 254 NMDVKIPKLVAFETVHSMTGAICPLKELCEVSH--QHGALTFVDEVHAVGL---YGEHGAGIGERDGQLHNMDIISGTLG 328 (514)
Q Consensus 254 ~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~--~~gv~li~Dea~~~g~---~g~~~~~~~~~~~~~~~~di~~~S~s 328 (514)
+..+++++++++++++||||.++|.+++.++++ ++|+++|+||+|+.+. .+....+...... ..+.+++++|+|
T Consensus 148 ~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~s 226 (365)
T 3get_A 148 ETHKDEIKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIK-EFDNVLYLGTFS 226 (365)
T ss_dssp HHTTTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHH-HCTTEEEEEESS
T ss_pred HHhCCCCCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhc-cCCCEEEEeecc
Confidence 444467899999999999999999888888887 6799999999999443 2222112211111 235789999999
Q ss_pred ccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCc
Q psy16848 329 KAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFP 405 (514)
Q Consensus 329 K~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 405 (514)
|.+|.+| |++++++++++.+......+ +.++..++++.++++. .+++++.+++++++++++.+.|++.++.
T Consensus 227 K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 300 (365)
T 3get_A 227 KLYGLGGLRIGYGIANANIISAFYKLRAPF----NVSNLALKAAVAAMDD--DEFTEKTLENNFSQMELYKEFAKKHNIK 300 (365)
T ss_dssp STTSCTTTCCEEEEECHHHHHHHHHHSCTT----CSCHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred hHhcCcchheEEEEcCHHHHHHHHHhcCCC----CcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 9998656 99999999999988766544 5788888888888873 3567888999999999999999999888
Q ss_pred cccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848 406 VEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW 478 (514)
Q Consensus 406 ~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l 478 (514)
+.++.+.++++.++.. +..++.+.|. ++||.+.++..|. .+++|++++ +++|+++++++|++++
T Consensus 301 ~~~~~~~~~~~~~~~~-~~~~~~~~l~-~~gi~v~~g~~~~----~~~iRis~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 301 IIDSYTNFITYFFDEK-NSTDLSEKLL-KKGIIIRNLKSYG----LNAIRITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp ECCCSSSEEEEECSSS-CHHHHHHHHH-TTTEECEECGGGT----CSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred ECCCCCeEEEEECCCC-CHHHHHHHHH-HCCEEEEECccCC----CCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 8777888888888764 6788999995 8999999988654 679999998 8999999999999875
No 24
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.97 E-value=1.6e-30 Score=266.79 Aligned_cols=345 Identities=12% Similarity=0.088 Sum_probs=248.4
Q ss_pred CCceeeecccCCCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC-----cEEEEecccccc
Q psy16848 16 SNRVTCRLSSVQYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE-----AGLVFTSCYVAN 88 (514)
Q Consensus 16 ~g~~~~d~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~i~~~sGt~a~ 88 (514)
.|+.++||.++.+. .+|.+.+++.++++... ...+....+..++.+++.+.+.+.+|.+ ..+++++|++++
T Consensus 45 ~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al 122 (404)
T 2o1b_A 45 GPLPLINMAVGIPDGPTPQGIIDHFQKALTIPE--NQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGL 122 (404)
T ss_dssp CSSCCEECCCCSCSSCCCHHHHHHHHHHTTCHH--HHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHH
T ss_pred CCCCEEecCCcCCCCCCCHHHHHHHHHHHhCCC--CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHH
Confidence 45678999765543 47889999988874310 0011111234455555555555544753 456566667889
Q ss_pred ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848 89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE 168 (514)
Q Consensus 89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
..++.++.. +||.|+++.+.|.+....++..|.+++.++... +. |
T Consensus 123 ~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~~---------------------~----------- 167 (404)
T 2o1b_A 123 VAVPTCVIN--PGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEP-PH---------------------Y----------- 167 (404)
T ss_dssp HHHHHHHCC--TTCEEEEEESCCSSHHHHHHHTTCEEEEEECCT-TT---------------------C-----------
T ss_pred HHHHHHhcC--CCCEEEEcCCCchhHHHHHHHCCCEEEEeccCc-cc---------------------C-----------
Confidence 999988865 999999999999999888887777766554310 00 0
Q ss_pred HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848 169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL 248 (514)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l 248 (514)
..|.+.+
T Consensus 168 -------------------------------------------------------------------------~~d~~~l 174 (404)
T 2o1b_A 168 -------------------------------------------------------------------------LPDWSKV 174 (404)
T ss_dssp -------------------------------------------------------------------------CCCGGGS
T ss_pred -------------------------------------------------------------------------cCCHHHH
Confidence 0144555
Q ss_pred HHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEc
Q psy16848 249 TQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG 325 (514)
Q Consensus 249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~ 325 (514)
++.+. ++++++++++++||||.++| +++|.++|+++|+++|+||+|+.+..+....++....+ ..+.+++++
T Consensus 175 ~~~l~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~i~~~ 249 (404)
T 2o1b_A 175 DSQII----DKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASEN-GKDVAIEIY 249 (404)
T ss_dssp CHHHH----HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTT-HHHHEEEEE
T ss_pred HHhhc----cCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCC-CCCCEEEEE
Confidence 55553 24789999999999999998 78999999999999999999995543222212222211 125689999
Q ss_pred CCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848 326 TLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI 402 (514)
Q Consensus 326 S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 402 (514)
|+||++|.+| ||+++++++++.+......+ +.+.+++.++++.++|+.. ..++++.+++++++++++.+.|++.
T Consensus 250 s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~ 326 (404)
T 2o1b_A 250 SLSKGYNMSGFRVGFAVGNKDMIQALKKYQTHT--NAGMFGALQDAAIYALNHY-DDFLEEQSNVFKTRRDRFEAMLAKA 326 (404)
T ss_dssp ESTTTTTCGGGCCEEEEECHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ecchhccCchhheEeEecCHHHHHHHHHHHhhc--cCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998656 99999999998887665443 3467888888888888764 4567788999999999999999998
Q ss_pred CCccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 403 GFPVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 403 g~~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
++.+..+.++ ++++.++...+..++.+.|++++||.+.++..|. ..+.+++|++++. +++++++++++|++++++.
T Consensus 327 g~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~-~~~~~~iRis~~~--~~e~l~~~l~~l~~~l~~~ 403 (404)
T 2o1b_A 327 DLPFVHAKGGIYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFG-ENGNRYVRISLAL--DDQKLDEAAIRLTELAYLY 403 (404)
T ss_dssp TCCEECCCBSSEEEEECCTTCCHHHHHHHHHHHHCEECEESGGGC-GGGTTEEEEECCS--CTTHHHHHHHHHHGGGGGG
T ss_pred CCeecCCCcceEEEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhC-cCCCCeEEEEEcC--CHHHHHHHHHHHHHHHHhh
Confidence 8877666655 5778887655677889998656899999987653 2246799999984 7889999999999876553
No 25
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.97 E-value=6.2e-30 Score=259.79 Aligned_cols=342 Identities=17% Similarity=0.181 Sum_probs=241.2
Q ss_pred eeeecccCCCCCChhHHHHHHHHHHH-hCCCCCCcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccchhhc
Q psy16848 19 VTCRLSSVQYKVPKGGRKCLGEALEK-FGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFTL 95 (514)
Q Consensus 19 ~~~d~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~l 95 (514)
.++|+++.. ..+|++.+++.+++.. ++.....+...++..+...++++++++++|.+ .+++++|||+|+..++.++
T Consensus 3 ~yld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~ 81 (384)
T 1eg5_A 3 VYFDNNATT-RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTV 81 (384)
T ss_dssp EECBTTTCC-CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHH
T ss_pred EEEecCccC-CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhh
Confidence 466776554 4578999999999985 22211112222334567789999999999865 5677778899999999888
Q ss_pred cc--cCCCceEEecCccchhhhhhh---hcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848 96 GK--MIPGLHYISDAGNHASMIQGI---RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 170 (514)
Q Consensus 96 ~~--~~~gd~v~~~~~~h~~~~~~~---~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
.. ..+||.|+++.++|.+....+ +..|.+++.++.++ +
T Consensus 82 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~------------------------------------ 124 (384)
T 1eg5_A 82 AETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS-R------------------------------------ 124 (384)
T ss_dssp HHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT-T------------------------------------
T ss_pred hhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCC-C------------------------------------
Confidence 61 139999999999999876554 44555554433210 0
Q ss_pred hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848 171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ 250 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ 250 (514)
+ ..|.+.+++
T Consensus 125 --------------------------~--------------------------------------------~~d~~~l~~ 134 (384)
T 1eg5_A 125 --------------------------G--------------------------------------------VVKLEELEK 134 (384)
T ss_dssp --------------------------S--------------------------------------------CBCHHHHHH
T ss_pred --------------------------C--------------------------------------------ccCHHHHHH
Confidence 0 013444444
Q ss_pred HHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcC--CEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc
Q psy16848 251 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHG--ALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG 328 (514)
Q Consensus 251 ~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~g--v~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s 328 (514)
.+ +++++++++++++||+|.++|+++|.++|++|| +++|+||+|+++.. . + +... .++|++++|+|
T Consensus 135 ~i----~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~---~--~-~~~~--~~~di~~~s~s 202 (384)
T 1eg5_A 135 LV----DEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKI---P--F-SLEK--LEVDYASFSAH 202 (384)
T ss_dssp HC----CTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTS---C--C-CCTT--TCCSEEEEEGG
T ss_pred Hh----CCCCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCc---c--c-Cchh--cCCCEEEecHH
Confidence 44 346899999999999999999999999999999 99999999985432 1 1 1222 26899999999
Q ss_pred ccccCCC-eEEEecHHH--HHHHHhhcC-ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16848 329 KAFGNIG-GYIVGTKNF--IDTIRSYAA-GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGF 404 (514)
Q Consensus 329 K~lg~~G-G~l~~~~~~--~~~l~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 404 (514)
|++|+.| |++++++++ .+.+..... ......+.+...+.++.++++... +++++.+++++++++++.+.|++.++
T Consensus 203 K~~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~ 281 (384)
T 1eg5_A 203 KFHGPKGVGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAV-EELSEAAKHMEKLRSKLVSGLMNLGA 281 (384)
T ss_dssp GGTSCTTCEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCceEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCCCe
Confidence 9998877 999998875 211111000 000133677888888888888753 46788999999999999999998777
Q ss_pred ccccC----CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC----------------CCCcEEEEEeCCCCCH
Q psy16848 405 PVEHT----PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP----------------VGEEKIRLAPTPFHTR 464 (514)
Q Consensus 405 ~~~~~----~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~----------------~~~~~iRl~~~~~~t~ 464 (514)
.+..+ ...++.+.++. .+..++.+.|. ++||.+.++..|... ...+++|++++..+++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~ 359 (384)
T 1eg5_A 282 HIITPLEISLPNTLSVSFPN-IRGSTLQNLLS-GYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTE 359 (384)
T ss_dssp EECSCTTSBCTTEEEEECTT-CCHHHHHHHHH-HTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCH
T ss_pred EEeCCcccCCCCEEEEEeCC-CCHHHHHHHHh-hCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCH
Confidence 76544 23467777764 35778989884 999999987644321 0147999999988999
Q ss_pred HHHHHHHHHHHHHHHHcCC
Q psy16848 465 EMIDKFVTDLLAVWKSLDL 483 (514)
Q Consensus 465 e~id~~~~~l~~~l~~~~~ 483 (514)
+|+++++++|++++++++.
T Consensus 360 ~~i~~~~~~l~~~~~~~~~ 378 (384)
T 1eg5_A 360 EEVDYFLKKIEEILSFLDL 378 (384)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988754
No 26
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.97 E-value=9.6e-30 Score=262.92 Aligned_cols=341 Identities=13% Similarity=0.077 Sum_probs=248.8
Q ss_pred cCCceeeecccCCC------CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC-------CCcEEEE
Q psy16848 15 KSNRVTCRLSSVQY------KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ-------KEAGLVF 81 (514)
Q Consensus 15 ~~g~~~~d~~~~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-------~~~~i~~ 81 (514)
..++.+||++.+++ ..+|.+++++.++++.... .+ |+......++++.++++++ .+.++++
T Consensus 51 ~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~--~~----y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t 124 (427)
T 3dyd_A 51 NPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKY--NG----YAPSIGFLSSREEIASYYHCPEAPLEAKDVILT 124 (427)
T ss_dssp CTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCS--SS----CCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEE
T ss_pred cCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcC--CC----CCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEe
Confidence 35677899976554 3478999999999986321 11 1122334678888888876 3456777
Q ss_pred eccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccC
Q psy16848 82 TSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG 161 (514)
Q Consensus 82 ~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 161 (514)
+|||+|+..++.++.. +||.|+++.++|......++..|.+++.++..+
T Consensus 125 ~g~t~al~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~----------------------------- 173 (427)
T 3dyd_A 125 SGCSQAIDLCLAVLAN--PGQNILVPRPGFSLYKTLAESMGIEVKLYNLLP----------------------------- 173 (427)
T ss_dssp SSHHHHHHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEG-----------------------------
T ss_pred cCcHHHHHHHHHHhcC--CCCEEEEcCCCchhHHHHHHHcCCEEEEEeccc-----------------------------
Confidence 7889999999988876 999999999999888877777777666543310
Q ss_pred CccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec
Q psy16848 162 AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~ 241 (514)
T Consensus 174 -------------------------------------------------------------------------------- 173 (427)
T 3dyd_A 174 -------------------------------------------------------------------------------- 173 (427)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCc
Q psy16848 242 HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQL 317 (514)
Q Consensus 242 ~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~ 317 (514)
..++..+.+.+++...++++++++++++||||.+++ +++|.++|+++|+++|+||+|+.+.. +....++.... .
T Consensus 174 ~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~--~ 251 (427)
T 3dyd_A 174 EKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLS--T 251 (427)
T ss_dssp GGTTEECHHHHHSSCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGC--S
T ss_pred ccCCCCCHHHHHHHhccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhC--C
Confidence 011111223333333456889999999999999999 99999999999999999999994333 22221222111 1
Q ss_pred cCceEEEcCCcccccCCC---eEEEec-------HHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHH
Q psy16848 318 HNMDIISGTLGKAFGNIG---GYIVGT-------KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAK 387 (514)
Q Consensus 318 ~~~di~~~S~sK~lg~~G---G~l~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 387 (514)
...+++++|+||.++.+| ||++++ +++.+.+...... ..+.++..++++.++|+....+++++.+++
T Consensus 252 ~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~ 328 (427)
T 3dyd_A 252 DVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQR---ILGPCTIVQGALKSILCRTPGEFYHNTLSF 328 (427)
T ss_dssp SCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH---HCCSCHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CCcEEEEeeccccCCCcCcceEEEEecCcchhhHHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 134588899999988767 999876 4677666654322 236788899999999986545667888999
Q ss_pred HHHHHHHHHHHHHhC-CCccccCC-CcEEEEEeCC-----CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCC
Q psy16848 388 HQDIVAYLRNELIQI-GFPVEHTP-SHIIPIKIGN-----PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTP 460 (514)
Q Consensus 388 ~~~~~~~l~~~L~~~-g~~~~~~~-~~~~~i~l~~-----~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~ 460 (514)
++++++++.+.|+++ ++.+..+. +.++++.++. ..+..++++.|++++||.+.++..+.. ++++|++++
T Consensus 329 ~~~~~~~l~~~L~~~~g~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~---~~~iRis~~- 404 (427)
T 3dyd_A 329 LKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEY---PNFIRVVIT- 404 (427)
T ss_dssp HHHHHHHHHHHHHHSTTEEEECCSBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTC---TTEEEEESC-
T ss_pred HHHHHHHHHHHHhcCCCceecCCCeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCC---CCeEEEEEC-
Confidence 999999999999998 87766555 4466666652 245678888886689999999886542 579999987
Q ss_pred CCCHHHHHHHHHHHHHHHHHcC
Q psy16848 461 FHTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 461 ~~t~e~id~~~~~l~~~l~~~~ 482 (514)
++++++++++++|++++++..
T Consensus 405 -~~~e~i~~~l~~l~~~l~~~~ 425 (427)
T 3dyd_A 405 -VPEVMMLEACSRIQEFCEQHY 425 (427)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHC
T ss_pred -CCHHHHHHHHHHHHHHHHHhh
Confidence 789999999999999998764
No 27
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.97 E-value=1.3e-29 Score=260.12 Aligned_cols=348 Identities=17% Similarity=0.105 Sum_probs=244.8
Q ss_pred CCceeeecccCCC--C--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccccc
Q psy16848 16 SNRVTCRLSSVQY--K--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVA 87 (514)
Q Consensus 16 ~g~~~~d~~~~~~--~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a 87 (514)
.|+.++||.++.. . .+|++.+++.+++++.+.... +....+..++.+++.+.+.+.+| .+..+++++|++|
T Consensus 32 ~g~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a 110 (407)
T 2zc0_A 32 KGVKLISLAAGDPDPELIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGA 110 (407)
T ss_dssp SSCCCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHH
T ss_pred CCCceEeCCCCCCCchhCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHH
Confidence 4557899965432 2 357899999999987421111 11111233444444444443337 2345666677899
Q ss_pred cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848 88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK 167 (514)
Q Consensus 88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
+..++.++.. +||.|+++.+.|.+....++..|.+++.++.+. +
T Consensus 111 ~~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~--------------------------------- 154 (407)
T 2zc0_A 111 LDLLGRVLID--PGDVVITENPSYINTLLAFEQLGAKIEGVPVDN-D--------------------------------- 154 (407)
T ss_dssp HHHHHHHHCC--TTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET-T---------------------------------
T ss_pred HHHHHHHhcC--CCCEEEEeCCChHHHHHHHHHcCCEEEEcccCC-C---------------------------------
Confidence 9999988865 999999999999999888887777766554310 0
Q ss_pred HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848 168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH 247 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~ 247 (514)
..|.+.
T Consensus 155 --------------------------------------------------------------------------~~d~~~ 160 (407)
T 2zc0_A 155 --------------------------------------------------------------------------GMRVDL 160 (407)
T ss_dssp --------------------------------------------------------------------------EECHHH
T ss_pred --------------------------------------------------------------------------CCCHHH
Confidence 014555
Q ss_pred HHHHHhhc--cCCCceEE-EEecCCCCCccccCH---HHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCc
Q psy16848 248 LTQVLENM--DVKIPKLV-AFETVHSMTGAICPL---KELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNM 320 (514)
Q Consensus 248 l~~~l~~~--~~~~~~~v-v~~~~~nptG~~~~l---~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~ 320 (514)
+++.+++. ..+++++| ++++++||+|.++|. ++|.++|++||+++|+||+|+.+.. +....++.... ..+.
T Consensus 161 l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~--~~~~ 238 (407)
T 2zc0_A 161 LEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALD--NEGR 238 (407)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGC--SSCC
T ss_pred HHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcC--CCCC
Confidence 55555521 11247776 578999999999995 5999999999999999999995543 22211222221 1246
Q ss_pred eEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHh-hh-chHHHHHHHHHHHHHHH
Q psy16848 321 DIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRIL-SS-QEGVELRAKHQDIVAYL 395 (514)
Q Consensus 321 di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~-~~~~~~~~~~~~~~~~l 395 (514)
+++++|+||++++ | |++++++++++.+......+ +.+.++..+.++.++++.. .. .++++.+++++++++++
T Consensus 239 ~i~~~s~sK~~~~-G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 315 (407)
T 2zc0_A 239 VIVAGTLSKVLGT-GFRIGWIIAEGEILKKVLMQKQPI--DFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIM 315 (407)
T ss_dssp EEEEEESTTTTCT-TSCCEEEECCHHHHHHHHHHHTTT--TSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHH
T ss_pred EEEEcccccccCC-CcceEEEecCHHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence 7899999999994 5 99999999999888766554 3356788888888888743 12 34567888889999999
Q ss_pred HHHHHhC--CCccccCC-CcEEEEEeCCCccHHHHHHHHHHhC-CeEEecccCCCCC-CCCcEEEEEeCCCCCHHHHHHH
Q psy16848 396 RNELIQI--GFPVEHTP-SHIIPIKIGNPALNTKICDMLLKEK-GHYVQPINYPTVP-VGEEKIRLAPTPFHTREMIDKF 470 (514)
Q Consensus 396 ~~~L~~~--g~~~~~~~-~~~~~i~l~~~~~~~~~~~~Ll~~~-GI~v~~~~~~~~~-~~~~~iRl~~~~~~t~e~id~~ 470 (514)
.+.|++. ++.+..+. +.++++.++...+..++.+.|. ++ ||.+.++..+... .+.+++|++++.. ++++++++
T Consensus 316 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~~ 393 (407)
T 2zc0_A 316 LKALENHLPNAEFTKPIAGMFVMFFLPEGADGISFANELM-EREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPIG 393 (407)
T ss_dssp HHHHHHHCTTSCBCCCSBSSEEEEECSTTCCHHHHHHHHH-HHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHHH
T ss_pred HHHHHHhCCCCEEecCCCcEEEEEEcCCCCCHHHHHHHHH-HhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHHH
Confidence 9999874 66665444 4577888876556788999996 66 9999998765432 2467999999865 89999999
Q ss_pred HHHHHHHHHHc
Q psy16848 471 VTDLLAVWKSL 481 (514)
Q Consensus 471 ~~~l~~~l~~~ 481 (514)
+++|+++++++
T Consensus 394 ~~~l~~~l~~~ 404 (407)
T 2zc0_A 394 IKKLAKLYKEK 404 (407)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 28
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.97 E-value=6.2e-30 Score=260.68 Aligned_cols=339 Identities=12% Similarity=0.076 Sum_probs=247.9
Q ss_pred ceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccccccccc
Q psy16848 18 RVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVANDST 91 (514)
Q Consensus 18 ~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a~~~~ 91 (514)
..++|+..++ +..+|++.+++.+++.+.... +..+..++.+++++++++++| .+.+++++||++|+..+
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~-----y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~ 106 (391)
T 4dq6_A 32 NDLLPMWVADMDFKAAPCIIDSLKNRLEQEIYG-----YTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLL 106 (391)
T ss_dssp SCSEECCSSSCSSCCCHHHHHHHHHHHTTCCCC-----CBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHH
T ss_pred CCceeccccCCCCCCCHHHHHHHHHHHhCCCCC-----CCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHH
Confidence 4457775443 224789999999988752221 122456888999999999887 34567778888899999
Q ss_pred hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCC-ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848 92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHN-DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 170 (514)
Q Consensus 92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~-d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
+.++.. +||+|+++.++|.+....++..|.+++.++.+ ..+ +.|
T Consensus 107 ~~~~~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------------------~~~------------- 151 (391)
T 4dq6_A 107 INELTK--ANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLEN--------------------GNY------------- 151 (391)
T ss_dssp HHHHSC--TTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTT--------------------SCE-------------
T ss_pred HHHhCC--CCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCC--------------------Cce-------------
Confidence 988866 99999999999999998888888877765431 000 000
Q ss_pred hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848 171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ 250 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ 250 (514)
.-|.+.+++
T Consensus 152 -----------------------------------------------------------------------~~d~~~l~~ 160 (391)
T 4dq6_A 152 -----------------------------------------------------------------------IMDYEDIEN 160 (391)
T ss_dssp -----------------------------------------------------------------------ECCHHHHHH
T ss_pred -----------------------------------------------------------------------EeeHHHHHH
Confidence 014455555
Q ss_pred HHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEcC
Q psy16848 251 VLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISGT 326 (514)
Q Consensus 251 ~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~S 326 (514)
.+++ ++++++++++||||.+++ +++|.++|++||+++|+||+|+.+.. +....++........+.+++++|
T Consensus 161 ~l~~-----~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s 235 (391)
T 4dq6_A 161 KIKD-----VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMA 235 (391)
T ss_dssp HCTT-----EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEC
T ss_pred Hhhc-----CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEe
Confidence 5433 789999999999999977 79999999999999999999995433 22221221111000245688999
Q ss_pred CcccccCCC---eEEEecH-HHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh-
Q psy16848 327 LGKAFGNIG---GYIVGTK-NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ- 401 (514)
Q Consensus 327 ~sK~lg~~G---G~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~- 401 (514)
+||.+|.+| |++++++ ++.+.+......+. ..+.+++.++++.++++.. .+.+++.+++++++++++.+.|++
T Consensus 236 ~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~ 313 (391)
T 4dq6_A 236 PTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRID-IKRNNCFSLVATEASYNNG-ESWLESFLEYLESNIDFAIKYINEN 313 (391)
T ss_dssp SHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTT-CCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhccCcccceEEEEeCCHHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999998656 9998875 88888876543321 2267788888888888753 455778899999999999999988
Q ss_pred C-CCccccCCCcEE-EEEeCC-CccHHHHHHHHHHhC-CeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848 402 I-GFPVEHTPSHII-PIKIGN-PALNTKICDMLLKEK-GHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV 477 (514)
Q Consensus 402 ~-g~~~~~~~~~~~-~i~l~~-~~~~~~~~~~Ll~~~-GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~ 477 (514)
. ++.+..+.++++ ++.++. ..+..++.+.|+ ++ ||.+.++..+.. .+.+++|++++ ++++++++++++|+++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~gi~v~~g~~~~~-~~~~~iRis~~--~~~~~i~~~l~~l~~~ 389 (391)
T 4dq6_A 314 MPKLKVRKPEGTYLLWVDFSALGLSDEELESILV-QKGKVALNQGNSFGI-GGSGYQRINLA--CPRSMLEEALIRIKNA 389 (391)
T ss_dssp CTTSEECCCSBSSEEEEECGGGCCCHHHHHHHHH-HTTCEECEEGGGGCT-TCTTEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred CCCCEecCCCccEEEEEEhhhcCCCHHHHHHHHH-HhCCEEeeCchhhCC-CCCCeEEEEEc--CCHHHHHHHHHHHHHH
Confidence 4 787777766644 477764 456789999996 66 999999886543 34689999998 6899999999999987
Q ss_pred H
Q psy16848 478 W 478 (514)
Q Consensus 478 l 478 (514)
+
T Consensus 390 l 390 (391)
T 4dq6_A 390 I 390 (391)
T ss_dssp H
T ss_pred h
Confidence 5
No 29
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.97 E-value=3e-30 Score=267.10 Aligned_cols=351 Identities=13% Similarity=0.111 Sum_probs=242.6
Q ss_pred CCceeeecccCCCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc----CC-CcEEEEecccccc
Q psy16848 16 SNRVTCRLSSVQYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH----QK-EAGLVFTSCYVAN 88 (514)
Q Consensus 16 ~g~~~~d~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~-~~~i~~~sGt~a~ 88 (514)
+++.++|+..+++. .+|.+.+++.++++.++...+.. .++......++++.+++++ +. +..+++++|++++
T Consensus 54 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~--~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~a 131 (432)
T 3ei9_A 54 PDAQVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYS--GYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCD 131 (432)
T ss_dssp TTCCCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCC--CCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHH
T ss_pred CCCCeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCcc--CCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChHHH
Confidence 45678999887765 57899999999999865433222 1222233456666666664 43 3456666666554
Q ss_pred ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848 89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE 168 (514)
Q Consensus 89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
+.++.++.. +||.|+++.+.|.+...+++..+...+..... .
T Consensus 132 l~~l~~l~~--~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~----------------~-------------------- 173 (432)
T 3ei9_A 132 ISRLQVMFG--SNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDV----------------Q-------------------- 173 (432)
T ss_dssp HHHHHHHHC--TTCCEEEEESCCTHHHHHHHHHTCSCCEETTT----------------T--------------------
T ss_pred HHHHHHHcC--CCCEEEEeCCCCHHHHHHHHHcCCcccccccc----------------c--------------------
Confidence 445666765 99999999999999998887776532110000 0
Q ss_pred HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848 169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL 248 (514)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l 248 (514)
...+++.++.++...+
T Consensus 174 ----------------------------------------------------------------~~~~~~~~~~~~~~~~ 189 (432)
T 3ei9_A 174 ----------------------------------------------------------------KYGNIEYMRCTPENGF 189 (432)
T ss_dssp ----------------------------------------------------------------EETTCEEEECCGGGTT
T ss_pred ----------------------------------------------------------------ccCceEEeccCcccCC
Confidence 0001122221100000
Q ss_pred HHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEc
Q psy16848 249 TQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG 325 (514)
Q Consensus 249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~ 325 (514)
...+++ .++++++++++|+||||.+++ +++|+++|++||+++|+||+|+.+..+....++....+ ..+.+++++
T Consensus 190 ~~~l~~--~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~-~~~~~i~~~ 266 (432)
T 3ei9_A 190 FPDLST--VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPG-AEEVAMETA 266 (432)
T ss_dssp SCCGGG--CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTT-GGGTEEEEE
T ss_pred cCChhh--CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCC-CCCeEEEEe
Confidence 001222 246889999999999999998 67888889999999999999996555443333433322 236789999
Q ss_pred CCcccccCCC---eEEEecHHH--------HHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q psy16848 326 TLGKAFGNIG---GYIVGTKNF--------IDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAY 394 (514)
Q Consensus 326 S~sK~lg~~G---G~l~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 394 (514)
||||.+|.+| ||+++++++ .+.+....... ..+.+++.+.++.+++.....++++++++++++++++
T Consensus 267 S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 344 (432)
T 3ei9_A 267 SFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTC--FNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNI 344 (432)
T ss_dssp ESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHS--CCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccc--cCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 9999999768 999998887 66665543222 2356788888888877532234677889999999999
Q ss_pred HHHHHHhCCCccccC-CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Q psy16848 395 LRNELIQIGFPVEHT-PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTD 473 (514)
Q Consensus 395 l~~~L~~~g~~~~~~-~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~ 473 (514)
+.+.|++.|+.+..+ .+.++++.++ ..+..++++.|++++||.+.++..|. +.+++++|+++. .+++++++++++
T Consensus 345 l~~~L~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~gv~v~~g~~f~-~~~~~~iRis~~--~~~e~l~~~l~r 420 (432)
T 3ei9_A 345 IIDTFTSLGYDVYGGKNAPYVWVHFP-NQSSWDVFAEILEKTHVVTTPGSGFG-PGGEGFVRVSAF--GHRENILEACRR 420 (432)
T ss_dssp HHHHHHHTTCCEEECSSSSEEEEECT-TSCHHHHHHHHHHHHCEECEEGGGGC-GGGTTEEEEECC--SCHHHHHHHHHH
T ss_pred HHHHHHHCCceecCCCcceEEEEECC-CCCHHHHHHHHHHHCCEEEeCchHhC-CCCCCEEEEEec--CCHHHHHHHHHH
Confidence 999999998887764 5668888887 34577888888756799999998755 445789999985 589999999999
Q ss_pred HHHHHH
Q psy16848 474 LLAVWK 479 (514)
Q Consensus 474 l~~~l~ 479 (514)
|++--.
T Consensus 421 l~~~~~ 426 (432)
T 3ei9_A 421 FKQLYK 426 (432)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 987544
No 30
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.97 E-value=1.7e-29 Score=257.50 Aligned_cols=338 Identities=17% Similarity=0.127 Sum_probs=244.2
Q ss_pred CCceeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEeccccccc
Q psy16848 16 SNRVTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSCYVAND 89 (514)
Q Consensus 16 ~g~~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sGt~a~~ 89 (514)
++..++|+..++. ..+|.+.+++.+.+.... ..+....|..++.+++++.+.+.+|. +..+++++|++|+.
T Consensus 29 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~---~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~ 105 (385)
T 1b5p_A 29 QGVDLVALTAGEPDFDTPEHVKEAARRALAQGK---TKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALF 105 (385)
T ss_dssp TTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTC---CSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEEecCCCCCCCCCHHHHHHHHHHHhcCC---CCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHH
Confidence 4567889966554 346789999988886521 12222234556666666666665552 45677777888999
Q ss_pred cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848 90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL 169 (514)
Q Consensus 90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
.++.++.. +||.|+++.++|......++..|.+++.++...
T Consensus 106 ~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~------------------------------------- 146 (385)
T 1b5p_A 106 NLFQAILD--PGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLP------------------------------------- 146 (385)
T ss_dssp HHHHHHCC--TTCEEEEEESCCTHHHHHHHHTTCEEEEEECCG-------------------------------------
T ss_pred HHHHHhcC--CCCEEEEcCCCchhHHHHHHHcCCEEEEeecCc-------------------------------------
Confidence 99988865 999999999999988877777776666544310
Q ss_pred hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848 170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT 249 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~ 249 (514)
.+++..+.
T Consensus 147 ------------------------------------------------------------------------~~~~~~d~ 154 (385)
T 1b5p_A 147 ------------------------------------------------------------------------EEGFVPDP 154 (385)
T ss_dssp ------------------------------------------------------------------------GGTTCCCH
T ss_pred ------------------------------------------------------------------------ccCCCCCH
Confidence 00111222
Q ss_pred HHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcC
Q psy16848 250 QVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT 326 (514)
Q Consensus 250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S 326 (514)
+.+++..+++++++++++|+||||.+++ +++|.++|++||+++|+||+|+.+..+....++... ..+.+++++|
T Consensus 155 ~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~---~~~~~i~~~s 231 (385)
T 1b5p_A 155 ERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRV---APEHTLTVNG 231 (385)
T ss_dssp HHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT---CTTTEEEEEE
T ss_pred HHHHHhcCCCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHc---CCCCEEEEEe
Confidence 3344444456899999999999999998 899999999999999999999955442221122222 1167899999
Q ss_pred CcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHH---hhhchHHHHHHHHHHHHHHHHHHHH
Q psy16848 327 LGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRI---LSSQEGVELRAKHQDIVAYLRNELI 400 (514)
Q Consensus 327 ~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~~l~~~L~ 400 (514)
|||.+|.+| ||+++++++++.+....... +.+.+...+.++.++++. . ..++++.+++++++++++.+.|+
T Consensus 232 ~SK~~~~~G~RiG~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~ 308 (385)
T 1b5p_A 232 AAKAFAMTGWRIGYACGPKEVIKAMASVSRQS--TTSPDTIAQWATLEALTNQEAS-RAFVEMAREAYRRRRDLLLEGLT 308 (385)
T ss_dssp STTTTTCGGGCCEEEECCHHHHHHHHHHHHTT--TCSCCHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcCCcccceEEEEeCHHHHHHHHHHHhhc--cCCCCHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998767 99999999988887654333 335677888888888863 2 34577888999999999999998
Q ss_pred hCCCccccCCCc-EEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848 401 QIGFPVEHTPSH-IIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW 478 (514)
Q Consensus 401 ~~g~~~~~~~~~-~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l 478 (514)
++|+.+..+.++ ++++.++. +.+..++.+.|. ++||.+.++..|.. ++++|++++ ++++++++++++|++++
T Consensus 309 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~gv~v~~g~~f~~---~~~iRis~~--~~~~~i~~~l~~l~~~l 382 (385)
T 1b5p_A 309 ALGLKAVRPSGAFYVLMDTSPIAPDEVRAAERLL-EAGVAVVPGTDFAA---FGHVRLSYA--TSEENLRKALERFARVL 382 (385)
T ss_dssp HHTCCBCCCSBTTEEEEECTTTCSSHHHHHHHHH-HTTEECEESGGGTC---TTEEEEECC--SCHHHHHHHHHHGGGGC
T ss_pred HCCCeecCCCeeEEEEEecCCCCCCHHHHHHHHH-HCCeEEecccccCC---CCeEEEEec--CCHHHHHHHHHHHHHHH
Confidence 888877666655 55566652 345778999996 99999999886532 569999998 78899999999988765
Q ss_pred H
Q psy16848 479 K 479 (514)
Q Consensus 479 ~ 479 (514)
+
T Consensus 383 ~ 383 (385)
T 1b5p_A 383 G 383 (385)
T ss_dssp -
T ss_pred h
Confidence 3
No 31
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.97 E-value=1e-29 Score=263.45 Aligned_cols=339 Identities=19% Similarity=0.180 Sum_probs=246.4
Q ss_pred cCCceeeeccc-CCC--C--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccc
Q psy16848 15 KSNRVTCRLSS-VQY--K--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND 89 (514)
Q Consensus 15 ~~g~~~~d~~~-~~~--~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~ 89 (514)
.+|+.++||.+ ..+ + .||++.+++.+++++.... + .. ...+...++++++++++|.+++++++||++|+.
T Consensus 73 ~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~--~-~~--~~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~ 147 (439)
T 2oat_A 73 VEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLT--S-RA--FYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGE 147 (439)
T ss_dssp TTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCC--C-TT--SEESSHHHHHHHHHHHHTCSEEEEESSHHHHHH
T ss_pred CCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcc--c-Cc--cCCHHHHHHHHHHHHhcCCCEEEEeCCHHHHHH
Confidence 46788999966 322 2 4799999999999875422 1 11 134678899999999999888999999999999
Q ss_pred cchhhccc-------cCCC-ceEEecC-ccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc
Q psy16848 90 STLFTLGK-------MIPG-LHYISDA-GNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT 160 (514)
Q Consensus 90 ~~l~~l~~-------~~~g-d~v~~~~-~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 160 (514)
.++..+.. ..+| |.|++.+ .+|.....+++..+......
T Consensus 148 ~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~-------------------------------- 195 (439)
T 2oat_A 148 TACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYD-------------------------------- 195 (439)
T ss_dssp HHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHT--------------------------------
T ss_pred HHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhccc--------------------------------
Confidence 99987641 1245 6665554 55566665555444211000
Q ss_pred CCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEe
Q psy16848 161 GAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIY 240 (514)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v 240 (514)
.+.....+++.+
T Consensus 196 --------------------------------------------------------------------~~~p~~~~v~~~ 207 (439)
T 2oat_A 196 --------------------------------------------------------------------GFGPFMPGFDII 207 (439)
T ss_dssp --------------------------------------------------------------------TSCSCCTTEEEE
T ss_pred --------------------------------------------------------------------CCCCCCCCeEEe
Confidence 000011345566
Q ss_pred cCCChhHHHHHHhhccCCCceEEEEecCCCCCcccc----CHHHHHHHHHHcCCEEEEeccccccccCCCCCCcc-ccCC
Q psy16848 241 RHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC----PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIG-ERDG 315 (514)
Q Consensus 241 ~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~----~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~-~~~~ 315 (514)
+.+|++.+++.++ .+++++|++++++|++|.+. ++++|+++|++||+++|+||+|+ | +++.+..+. +..+
T Consensus 208 ~~~d~~~le~~l~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-g-~g~~g~~~~~~~~~ 282 (439)
T 2oat_A 208 PYNDLPALERALQ---DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQT-G-LARTGRWLAVDYEN 282 (439)
T ss_dssp CSSCHHHHHHHTT---STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-T-TTTTSSSSGGGGGT
T ss_pred CCCCHHHHHHHhC---CCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C-CccCCcchhHHHhC
Confidence 6678888887775 24588999999999999876 49999999999999999999997 3 233332221 3333
Q ss_pred CccCceEEEcCCcccccCC---CeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q psy16848 316 QLHNMDIISGTLGKAFGNI---GGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIV 392 (514)
Q Consensus 316 ~~~~~di~~~S~sK~lg~~---GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 392 (514)
. .+|++ |+||++++. +|++++++++++.+....... +.+.+++.++++.++++.+.++ +..++++++.
T Consensus 283 ~--~~Di~--t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~--t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~ 353 (439)
T 2oat_A 283 V--RPDIV--LLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGS--TYGGNPLGCRVAIAALEVLEEE---NLAENADKLG 353 (439)
T ss_dssp C--CCSEE--EECGGGGTTSSCCEEEEECHHHHTTSCTTSSCC--SSTTCHHHHHHHHHHHHHHHHT---THHHHHHHHH
T ss_pred C--CCcEE--EecccccCCCCCeEEEEECHHHHhccCCCCccc--CCCcCHHHHHHHHHHHHHHhhh---hHHHHHHHHH
Confidence 3 67887 999999763 599999998887775543333 4578899999999999987544 3788899999
Q ss_pred HHHHHHHHhCCCcc---ccCCCcEEEEEeCCC--ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHH
Q psy16848 393 AYLRNELIQIGFPV---EHTPSHIIPIKIGNP--ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI 467 (514)
Q Consensus 393 ~~l~~~L~~~g~~~---~~~~~~~~~i~l~~~--~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~i 467 (514)
+++.+.|+++++++ ..+.+.++++.+++. .+..++++.|+ ++||.+.+. +.+++|++++..+|++|+
T Consensus 354 ~~l~~~L~~l~~~~~~~~~~~g~~~~v~l~~~~~~~~~~l~~~l~-~~Gv~v~~~-------~~~~iRi~~~~~~t~e~i 425 (439)
T 2oat_A 354 IILRNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLR-DNGLLAKPT-------HGDIIRFAPPLVIKEDEL 425 (439)
T ss_dssp HHHHHHHTTSCTTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHH-HTTEECCBS-------SSSEEEECCCTTCCHHHH
T ss_pred HHHHHHHHHhcCCCcEEEEeeeeEEEEEEecCccHHHHHHHHHHH-HCCeEEecC-------CCCEEEEECccCCCHHHH
Confidence 99999998876553 234667888888754 34678999996 899998752 356899999989999999
Q ss_pred HHHHHHHHHHHHH
Q psy16848 468 DKFVTDLLAVWKS 480 (514)
Q Consensus 468 d~~~~~l~~~l~~ 480 (514)
++++++|++++++
T Consensus 426 ~~~l~~l~~~l~~ 438 (439)
T 2oat_A 426 RESIEIINKTILS 438 (439)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 32
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.97 E-value=6.5e-30 Score=262.80 Aligned_cols=344 Identities=15% Similarity=0.135 Sum_probs=246.1
Q ss_pred eeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----C-cEEEEeccccccccc
Q psy16848 19 VTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----E-AGLVFTSCYVANDST 91 (514)
Q Consensus 19 ~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~-~~i~~~sGt~a~~~~ 91 (514)
.++||..+.. ..+|.+.+++.++++.. ...+....|..++.+++.+.+.+.+|. + .+++++||++|+..+
T Consensus 26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~---~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~ 102 (411)
T 2o0r_A 26 GAVNLGQGFPDEDGPPKMLQAAQDAIAGG---VNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAA 102 (411)
T ss_dssp TCEESSCSSCSSCCCHHHHHHHHHHHHTT---CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHH
T ss_pred CeeeccCcCCCCCCCHHHHHHHHHHHhcC---CCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHH
Confidence 4789865543 34789999999999762 111222234456666666666665563 3 677777888999999
Q ss_pred hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848 92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE 171 (514)
Q Consensus 92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
+.++.. +||.|+++.+.|.+....++..|.+++.++.+... ..|
T Consensus 103 ~~~~~~--~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~--------------------~~~-------------- 146 (411)
T 2o0r_A 103 VLGLVE--PGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDG--------------------RGF-------------- 146 (411)
T ss_dssp HHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEET--------------------TEE--------------
T ss_pred HHHhcC--CCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccc--------------------cCC--------------
Confidence 988865 99999999999999888777777766654331000 000
Q ss_pred hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848 172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV 251 (514)
Q Consensus 172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~ 251 (514)
..|.+.+++.
T Consensus 147 ----------------------------------------------------------------------~~d~~~l~~~ 156 (411)
T 2o0r_A 147 ----------------------------------------------------------------------ALDADALRRA 156 (411)
T ss_dssp ----------------------------------------------------------------------ECCHHHHHHH
T ss_pred ----------------------------------------------------------------------CCCHHHHHHh
Confidence 0144555554
Q ss_pred HhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEcCC
Q psy16848 252 LENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISGTL 327 (514)
Q Consensus 252 l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~S~ 327 (514)
+ ++++++|++++++||+|.++| +++|.++|++||+++|+||+|+.+.. |....++..... ..+.|++++|+
T Consensus 157 l----~~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~-~~~~~i~~~s~ 231 (411)
T 2o0r_A 157 V----TPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDG-MAERTITISSA 231 (411)
T ss_dssp C----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTT-TGGGEEEEEEH
T ss_pred h----ccCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccC-CCCCEEEEeec
Confidence 4 346889999999999999998 59999999999999999999995543 222222222211 24689999999
Q ss_pred cccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16848 328 GKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGF 404 (514)
Q Consensus 328 sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 404 (514)
||.+|.+| |++++++++++.+....... +.+.+++.++++.++|+.. ..++++++++++++++++.+.|++.|+
T Consensus 232 sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~ 308 (411)
T 2o0r_A 232 AKMFNCTGWKIGWACGPAELIAGVRAAKQYL--SYVGGAPFQPAVALALDTE-DAWVAALRNSLRARRDRLAAGLTEIGF 308 (411)
T ss_dssp HHHTTCTTTCEEEEECCHHHHHHHHHHHHHH--TSCCCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhcCCccceEEEEeeCHHHHHHHHHHHhhc--cCCCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99998657 99999999988887654333 2345666777778888754 456778899999999999999988888
Q ss_pred ccccCCCc-EEEEEeCCC--ccHHHHHHHHHHhCCeEEecccCCCCCC----------CCcEEEEEeCCCCCHHHHHHHH
Q psy16848 405 PVEHTPSH-IIPIKIGNP--ALNTKICDMLLKEKGHYVQPINYPTVPV----------GEEKIRLAPTPFHTREMIDKFV 471 (514)
Q Consensus 405 ~~~~~~~~-~~~i~l~~~--~~~~~~~~~Ll~~~GI~v~~~~~~~~~~----------~~~~iRl~~~~~~t~e~id~~~ 471 (514)
.+..+.++ ++++.++.. .+..++.+.|++++||.+.++..+.... +.+++|++++ .+++++++++
T Consensus 309 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~~e~i~~~~ 386 (411)
T 2o0r_A 309 AVHDSYGTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KRDDTLDEAI 386 (411)
T ss_dssp EECCCCBSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC--SCHHHHHHHH
T ss_pred EecCCCeeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec--CCHHHHHHHH
Confidence 77666555 677887641 3467888888657899999987653222 4578999997 4899999999
Q ss_pred HHHHHHHHHc
Q psy16848 472 TDLLAVWKSL 481 (514)
Q Consensus 472 ~~l~~~l~~~ 481 (514)
++|++++++.
T Consensus 387 ~~l~~~~~~~ 396 (411)
T 2o0r_A 387 RRLSVLAERP 396 (411)
T ss_dssp HHHGGGGC--
T ss_pred HHHHHHHhcc
Confidence 9999876554
No 33
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.97 E-value=1.2e-29 Score=259.28 Aligned_cols=340 Identities=15% Similarity=0.098 Sum_probs=248.9
Q ss_pred cCCceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC-----C-cEEEEecccc
Q psy16848 15 KSNRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK-----E-AGLVFTSCYV 86 (514)
Q Consensus 15 ~~g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~-~~i~~~sGt~ 86 (514)
.+|+.++||.+++ +..+|.+.+++.+++... ..+....|..++.+++++.+.+.+|. + ..+++++|++
T Consensus 27 ~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~ 102 (396)
T 3jtx_A 27 PEGMEAVPLHIGEPKHPTPKVITDALTASLHEL----EKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSRE 102 (396)
T ss_dssp CTTCCCEECSCCSCCSCCCHHHHHHHHHTGGGG----GSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHH
T ss_pred ccCCCeEEeCCcCCCCCCCHHHHHHHHHHhhhc----cCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHH
Confidence 3678899997654 334788999998877532 11222345567778888888777663 3 5676777788
Q ss_pred ccccchhhccccCCC-----ceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccC
Q psy16848 87 ANDSTLFTLGKMIPG-----LHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG 161 (514)
Q Consensus 87 a~~~~l~~l~~~~~g-----d~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 161 (514)
++..++.++.. +| |.|+++.++|.+....++..|.+++.++..+ +
T Consensus 103 al~~~~~~~~~--~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~--------------------------- 152 (396)
T 3jtx_A 103 ALFSFVQTVLN--PVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPA-P--------------------------- 152 (396)
T ss_dssp HHHHHHHHHCC--C---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECCT-T---------------------------
T ss_pred HHHHHHHHHhC--CCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecCC-C---------------------------
Confidence 89888888876 76 7999999999998888887777776554310 0
Q ss_pred CccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec
Q psy16848 162 AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~ 241 (514)
+.
T Consensus 153 ---------------------------------g~--------------------------------------------- 154 (396)
T 3jtx_A 153 ---------------------------------SF--------------------------------------------- 154 (396)
T ss_dssp ---------------------------------TC---------------------------------------------
T ss_pred ---------------------------------CC---------------------------------------------
Confidence 00
Q ss_pred CCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC-CCCCcccc---C
Q psy16848 242 HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE-HGAGIGER---D 314 (514)
Q Consensus 242 ~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~-~~~~~~~~---~ 314 (514)
..|++.+++.+.+ +++++++++|+||||.+++ +++|.++|++||+++|+||+|+.+..+. ...+.... .
T Consensus 155 ~~d~~~l~~~~~~----~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 230 (396)
T 3jtx_A 155 NPDWRSISEEVWK----RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQL 230 (396)
T ss_dssp CCCGGGSCHHHHH----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHT
T ss_pred ccCHHHHHHhhcc----CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhc
Confidence 0144555555543 4789999999999999999 5669999999999999999999543322 21111110 0
Q ss_pred CCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy16848 315 GQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDI 391 (514)
Q Consensus 315 ~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 391 (514)
+...+.++++.|+||.++.+| ||+++++++++.+....... +.+.+++.+.++.++++. ..++.+.+++++++
T Consensus 231 ~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~ 306 (396)
T 3jtx_A 231 GRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYH--GSAMSIPVQRASIAAWDD--EQHVIDNRRLYQEK 306 (396)
T ss_dssp TCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHHHHHHH--TCCCCHHHHHHHHHHHHC--CHHHHHHHHHHHHH
T ss_pred ccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHHHHhhc--ccCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence 112467899999999987767 99999999999887665443 446788889888888873 45678889999999
Q ss_pred HHHHHHHHHhCCCccccCC-CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCC-----CCCCcEEEEEeCCCCCHH
Q psy16848 392 VAYLRNELIQIGFPVEHTP-SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTV-----PVGEEKIRLAPTPFHTRE 465 (514)
Q Consensus 392 ~~~l~~~L~~~g~~~~~~~-~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~-----~~~~~~iRl~~~~~~t~e 465 (514)
++++.+.|++. +.+..+. +.++++.++. .+..++++.|++++||.+.++..|.. ..+.+++|++++. +++
T Consensus 307 ~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~--~~~ 382 (396)
T 3jtx_A 307 FERVIPILQQV-FDVKLPDASFYIWLKVPD-GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA--DVA 382 (396)
T ss_dssp HHHHHHHHTTT-SCCCCCSSSSEEEEECTT-SCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS--CHH
T ss_pred HHHHHHHHHhc-CCccCCCeeEEEEEECCC-CCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC--CHH
Confidence 99999999886 4444444 4477788875 45778899987567999999987654 2356899999984 899
Q ss_pred HHHHHHHHHHHHH
Q psy16848 466 MIDKFVTDLLAVW 478 (514)
Q Consensus 466 ~id~~~~~l~~~l 478 (514)
++++++++|++++
T Consensus 383 ~i~~~l~~l~~~l 395 (396)
T 3jtx_A 383 TCVKAAEDIVSLY 395 (396)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 34
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.97 E-value=1.7e-29 Score=261.60 Aligned_cols=346 Identities=9% Similarity=0.036 Sum_probs=247.0
Q ss_pred CCceeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccccccc
Q psy16848 16 SNRVTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVAND 89 (514)
Q Consensus 16 ~g~~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a~~ 89 (514)
+|..++||.++.. ..+|++.+++.+++.... ..++....|..++.+++.+.+.+.+| .++.+++++||+++.
T Consensus 42 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~ 119 (437)
T 3g0t_A 42 TGTKFCRMEMGVPGLPAPQIGIETEIQKLREGV--ASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCF 119 (437)
T ss_dssp HTCCCEECCCCSCCSCCCHHHHHHHHHHHHHTG--GGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEeccCcCCCCCCCHHHHHHHHHHHhCCc--CcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHH
Confidence 4678999976553 347899999999998511 01111122333444444444444332 345677778888999
Q ss_pred cchhhccccCCCc--eEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848 90 STLFTLGKMIPGL--HYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK 167 (514)
Q Consensus 90 ~~l~~l~~~~~gd--~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
.++.++....+|| .|+++.++|.+....++..|.+++.++.++ +
T Consensus 120 ~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~--------------------------------- 165 (437)
T 3g0t_A 120 VSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLFE-Y--------------------------------- 165 (437)
T ss_dssp HHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGGG-G---------------------------------
T ss_pred HHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeecC-C---------------------------------
Confidence 9988886113999 999999999999888877777766554310 0
Q ss_pred HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848 168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH 247 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~ 247 (514)
+. ..|.+.
T Consensus 166 ---------------------------~~---------------------------------------------~~d~~~ 173 (437)
T 3g0t_A 166 ---------------------------RG---------------------------------------------EKLREK 173 (437)
T ss_dssp ---------------------------CT---------------------------------------------THHHHH
T ss_pred ---------------------------CC---------------------------------------------ccCHHH
Confidence 00 002334
Q ss_pred HHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCc-------cccCCCc
Q psy16848 248 LTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGI-------GERDGQL 317 (514)
Q Consensus 248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~-------~~~~~~~ 317 (514)
+++.++ +++++++++++|+||||.+++ +++|.++|++||+++|+||+|+.+..+. ..++ ..... .
T Consensus 174 l~~~l~---~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~-~ 248 (437)
T 3g0t_A 174 LESYLQ---TGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRK-DYSHPGEPLYQPSVAN-Y 248 (437)
T ss_dssp HHHHHT---TTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTS-CCCSTTSSCCCCCGGG-T
T ss_pred HHHHHh---cCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCC-CcCcccccchhhccCC-C
Confidence 444442 345789999999999999998 7889999999999999999999554431 1112 12211 2
Q ss_pred cCceEEEcCCcccccCCC---eEEEecHHHHH-H-----------------HHhhcCceEeccCCcHHHHHHHHHHHHHh
Q psy16848 318 HNMDIISGTLGKAFGNIG---GYIVGTKNFID-T-----------------IRSYAAGFIFTTSLPPTVLAGAREAIRIL 376 (514)
Q Consensus 318 ~~~di~~~S~sK~lg~~G---G~l~~~~~~~~-~-----------------l~~~~~~~~~~~~~~~~~~~a~~~~l~~~ 376 (514)
.+.+++++|+||.+|.+| ||+++++++++ . +....... +.+.++..+.++.++++..
T Consensus 249 ~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~ 326 (437)
T 3g0t_A 249 TDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYAL--SSGATHSAQWGMAAMLKAC 326 (437)
T ss_dssp CSCEEEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHH--HSSSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhh--cCCCCHHHHHHHHHHHhCc
Confidence 467899999999998656 99999998888 6 65444333 3467888888888888865
Q ss_pred h--hchHHHHHHHHHHHHHHHHHHHHhCCCccc-------c-CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCC
Q psy16848 377 S--SQEGVELRAKHQDIVAYLRNELIQIGFPVE-------H-TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPT 446 (514)
Q Consensus 377 ~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-------~-~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~ 446 (514)
. ..++++.+++++++++++.+.|+++|+.+. + ..+.++++.++ ..+..++.+.|. ++||.+.++..+.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~-~~gi~v~~~~~~~ 404 (437)
T 3g0t_A 327 NDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGYK-GMDSSKLIEKFV-RYGMCAITLKTTG 404 (437)
T ss_dssp HTTSCCHHHHHHHHHHHHHHHHHHHHTTTEEESSCEETTEECCSSSEEEEEET-TCCHHHHHHHHH-HTTEECEESTTTT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEeccccCCCCCceeEEEEEecC-CCCHHHHHHHHH-HcCeEEeeccccC
Confidence 2 112788999999999999999999988776 4 45567788887 456789999996 8899999887654
Q ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848 447 VPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS 480 (514)
Q Consensus 447 ~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~ 480 (514)
. ...+++|++++ ..+++++++++++|++++++
T Consensus 405 ~-~~~~~iRis~~-~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 405 S-KRNEAMRICTS-LLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp C-CCTTCEEEECS-SSCGGGHHHHHHHHHHHHHH
T ss_pred C-CCCCEEEEEEe-cCCHHHHHHHHHHHHHHHhc
Confidence 2 22378999999 45899999999999998764
No 35
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.97 E-value=1e-29 Score=262.85 Aligned_cols=353 Identities=14% Similarity=0.088 Sum_probs=249.8
Q ss_pred ceeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----C-cEEEEecccccccc
Q psy16848 18 RVTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----E-AGLVFTSCYVANDS 90 (514)
Q Consensus 18 ~~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~-~~i~~~sGt~a~~~ 90 (514)
..++||..+.+ ..+|.+.+++.+++.+.......+....|..++.+++.+.+.+.+|. + .++++++|++|+..
T Consensus 37 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~ 116 (429)
T 1yiz_A 37 YKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYA 116 (429)
T ss_dssp HCCEECCSSSCSSCCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHH
Confidence 35789866543 34789999999988753211111111224455666666666655562 3 56777778899999
Q ss_pred chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848 91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 170 (514)
Q Consensus 91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
++.++.. +||.|+++.+.|.+....++..|.+++.++....+.
T Consensus 117 ~~~~~~~--~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~----------------------------------- 159 (429)
T 1yiz_A 117 TIQGHVD--EGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKT----------------------------------- 159 (429)
T ss_dssp HHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCS-----------------------------------
T ss_pred HHHHhcC--CCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccc-----------------------------------
Confidence 9988865 999999999999998888887777766554310000
Q ss_pred hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec-CCChhHHH
Q psy16848 171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR-HNDVNHLT 249 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~-~~d~~~l~ 249 (514)
+....... ..|.+.++
T Consensus 160 ---------------------------------------------------------------~~~~~~~~~~~d~~~l~ 176 (429)
T 1yiz_A 160 ---------------------------------------------------------------GGTISSADWVLDNNELE 176 (429)
T ss_dssp ---------------------------------------------------------------SSSEEGGGCBCCHHHHH
T ss_pred ---------------------------------------------------------------cccccccCcccCHHHHH
Confidence 00000000 11455555
Q ss_pred HHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEc
Q psy16848 250 QVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISG 325 (514)
Q Consensus 250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~ 325 (514)
+.+ .++++++++++++||+|.++| +++|.++|++||+++|+||+|+.+.. +....++..... ..+.|++++
T Consensus 177 ~~l----~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~ 251 (429)
T 1yiz_A 177 ALF----NEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPG-MWERTITIG 251 (429)
T ss_dssp HHC----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTT-TGGGEEEEE
T ss_pred HHh----ccCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccC-CcCceEEEe
Confidence 555 356899999999999999997 89999999999999999999994433 322222222211 246899999
Q ss_pred CCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHH-----hh-hchHHHHHHHHHHHHHHHH
Q psy16848 326 TLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRI-----LS-SQEGVELRAKHQDIVAYLR 396 (514)
Q Consensus 326 S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~-----~~-~~~~~~~~~~~~~~~~~l~ 396 (514)
|+||.+|++| |++++++++++.+....... +.+.+++.++++.++|+. .. ...+++.+++++++++++.
T Consensus 252 s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 329 (429)
T 1yiz_A 252 SAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNC--VYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMA 329 (429)
T ss_dssp EHHHHHTCGGGCCEEEESCHHHHHHHHHHHHTT--TCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHH
T ss_pred cchhccCCCCcceEEEEeCHHHHHHHHHHHhhc--ccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHH
Confidence 9999998657 99999999998887654333 336778888888888886 21 4567888999999999999
Q ss_pred HHHHhCCCccccCC-CcEEEEEeCCC------------ccHHHHHHHHHHhCCeEEecccCCCCCC----CCcEEEEEeC
Q psy16848 397 NELIQIGFPVEHTP-SHIIPIKIGNP------------ALNTKICDMLLKEKGHYVQPINYPTVPV----GEEKIRLAPT 459 (514)
Q Consensus 397 ~~L~~~g~~~~~~~-~~~~~i~l~~~------------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~----~~~~iRl~~~ 459 (514)
+.|++.++.+..+. +.++++.++.. .+..++++.|++++||.+.++..+.... +.+++|++++
T Consensus 330 ~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~ 409 (429)
T 1yiz_A 330 SFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF 409 (429)
T ss_dssp HHHHHHTCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC
T ss_pred HHHHhCCCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec
Confidence 99998888776665 45778888753 3466788888657999999887543221 2579999998
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q psy16848 460 PFHTREMIDKFVTDLLAVWK 479 (514)
Q Consensus 460 ~~~t~e~id~~~~~l~~~l~ 479 (514)
.+++++++++++|+++++
T Consensus 410 --~~~e~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 410 --KKDENLQKAAEILRKWKG 427 (429)
T ss_dssp --SCHHHHHHHHHHHHHHSC
T ss_pred --CCHHHHHHHHHHHHHhcc
Confidence 489999999999998754
No 36
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.97 E-value=1.4e-29 Score=255.63 Aligned_cols=322 Identities=14% Similarity=0.035 Sum_probs=243.5
Q ss_pred CceeeecccCCC-C-CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC--CcEEEEeccccccccch
Q psy16848 17 NRVTCRLSSVQY-K-VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK--EAGLVFTSCYVANDSTL 92 (514)
Q Consensus 17 g~~~~d~~~~~~-~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~i~~~sGt~a~~~~l 92 (514)
++.++|+.++.. + .+|++.+++.++++.. .. +. .....+++++++++++. +++++++|||+++..++
T Consensus 31 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~----y~-~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~ 101 (363)
T 3ffh_A 31 LTKITKLSSNENPLGTSKKVAAIQANSSVET----EI----YP-DGWASSLRKEVADFYQLEEEELIFTAGVDELIELLT 101 (363)
T ss_dssp CSCCEECSSCSCTTCCCHHHHHHHHTCBSCC----CB----C-----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHH
T ss_pred CCceEEccCCCCCCCCCHHHHHHHHHHHHHh----hc----CC-CcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHH
Confidence 357899976543 2 4788888887755421 11 11 23457899999999985 45677778888999999
Q ss_pred hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848 93 FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV 172 (514)
Q Consensus 93 ~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
.++.+ +||.|+++.+.|.+....++..|.+++.++.+. +
T Consensus 102 ~~~~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~-~-------------------------------------- 140 (363)
T 3ffh_A 102 RVLLD--TTTNTVMATPTFVQYRQNALIEGAEVREIPLLQ-D-------------------------------------- 140 (363)
T ss_dssp HHHCS--TTCEEEEEESSCHHHHHHHHHHTCEEEEEECCT-T--------------------------------------
T ss_pred HHHcc--CCCEEEEcCCChHHHHHHHHHcCCEEEEecCCC-C--------------------------------------
Confidence 88865 999999999999998877777776666554420 0
Q ss_pred hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848 173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL 252 (514)
Q Consensus 173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l 252 (514)
. ..|.+.+++.+
T Consensus 141 -----------------------~---------------------------------------------~~d~~~l~~~i 152 (363)
T 3ffh_A 141 -----------------------G---------------------------------------------EHDLEGMLNAI 152 (363)
T ss_dssp -----------------------S---------------------------------------------CCCHHHHHHHC
T ss_pred -----------------------C---------------------------------------------CcCHHHHHHhc
Confidence 0 01344444444
Q ss_pred hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHc--CCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccc
Q psy16848 253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH--GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKA 330 (514)
Q Consensus 253 ~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~--gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~ 330 (514)
+++++++++++++||||.++|.+++.++++.+ |+++|+||+|+.+..+.. .+...... ..+.+++++|+||.
T Consensus 153 ----~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~-~~~~~i~~~s~sK~ 226 (363)
T 3ffh_A 153 ----DEKTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVTPQP-EKHEKLVR-TYKNLIITRTFSKI 226 (363)
T ss_dssp ----CTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCC-CCCGGGGG-TCTTEEEEEESSST
T ss_pred ----ccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCccc-cCHHHHhh-cCCCEEEEeechhh
Confidence 35689999999999999999999999998888 999999999994433321 12222221 23567999999999
Q ss_pred ccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh-CCCcc
Q psy16848 331 FGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ-IGFPV 406 (514)
Q Consensus 331 lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~ 406 (514)
+|.+| |++++++++++.+......+ +.++..++++.++++. .+++++.+++++++++++.+.|++ .++.+
T Consensus 227 ~g~~G~r~G~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~ 300 (363)
T 3ffh_A 227 YGLASARVGYGIADKEIIRQLNIVRPPF----NTTSIGQKLAIEAIKD--QAFIGECRTSNANGIKQYEAFAKRFEKVKL 300 (363)
T ss_dssp TCCSSCCCEEEEECHHHHHHHHHTCCSC----CCBHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred hcCchhceeeeecCHHHHHHHHHhCCCC----CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhhCCCceE
Confidence 98657 99999999999988766433 6788999999998873 356778899999999999999999 58888
Q ss_pred ccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848 407 EHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV 477 (514)
Q Consensus 407 ~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~ 477 (514)
.++.+.++++.++. +..++.+.|. ++||.+.++..+.. ++++|++++ +++|+++++++|+++
T Consensus 301 ~~~~~~~~~~~~~~--~~~~~~~~l~-~~gi~v~~g~~~~~---~~~iRis~~---~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 301 YPANGNFVLIDLGI--EAGTIFSYLE-KNGYITRSGAALGF---PTAVRITIG---KEEDNSAVIALLEKL 362 (363)
T ss_dssp CCCCSSEEEEECSS--CHHHHHHHHH-HTTEECEETTTTTC---TTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCC--CHHHHHHHHH-HCCeEEEeCccCCC---CCeEEEECC---CHHHHHHHHHHHHHh
Confidence 77788888888875 5788999996 89999999876432 579999998 899999999999875
No 37
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.97 E-value=1.1e-29 Score=259.73 Aligned_cols=337 Identities=16% Similarity=0.169 Sum_probs=242.2
Q ss_pred cCCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccc
Q psy16848 15 KSNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND 89 (514)
Q Consensus 15 ~~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~ 89 (514)
.+|+.++||.++ .+++ +|++.+++.+++++....+. ....+..++++++++++++.+++++++||++|+.
T Consensus 33 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~la~~~~~~~v~~~~gg~ea~~ 107 (395)
T 3nx3_A 33 DKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSN-----LYYNENIAAAAKNLAKASALERVFFTNSGTESIE 107 (395)
T ss_dssp TTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCT-----TSBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHH
T ss_pred CCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhcccccc-----ccCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHH
Confidence 367889999765 4454 79999999999987543221 1245788999999999999888999999999999
Q ss_pred cchhhcccc-----CCCceEEecCccchh-hhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCc
Q psy16848 90 STLFTLGKM-----IPGLHYISDAGNHAS-MIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAI 163 (514)
Q Consensus 90 ~~l~~l~~~-----~~gd~v~~~~~~h~~-~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
.++..+... .++|.|++.++.|+. ...+....+...
T Consensus 108 ~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~-------------------------------------- 149 (395)
T 3nx3_A 108 GAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEK-------------------------------------- 149 (395)
T ss_dssp HHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHH--------------------------------------
T ss_pred HHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcc--------------------------------------
Confidence 998876532 256777766555543 333333222110
Q ss_pred cchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC
Q psy16848 164 CPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN 243 (514)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~ 243 (514)
+...+...+.++..++.+
T Consensus 150 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 167 (395)
T 3nx3_A 150 --------------------------------------------------------------YQKPFKPLISGVKFAKYN 167 (395)
T ss_dssp --------------------------------------------------------------HHGGGCSCCSCEEEECTT
T ss_pred --------------------------------------------------------------cccccCCCCCCcEEeCCC
Confidence 001111223456667777
Q ss_pred ChhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCcc
Q psy16848 244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLH 318 (514)
Q Consensus 244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~ 318 (514)
|++.+++.++ ++++++++++++|++|...+ +++|.++|++||+++|+||+|+ +|..|... ..+..+.
T Consensus 168 d~~~l~~~l~----~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~--~~~~~~~-- 239 (395)
T 3nx3_A 168 DISSVEKLVN----EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFF--AYEHAQI-- 239 (395)
T ss_dssp CHHHHHTTCC----TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS--GGGGGTC--
T ss_pred CHHHHHHhcc----CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcch--hHHhcCC--
Confidence 7777666653 56899999999999999977 9999999999999999999998 55544321 1122332
Q ss_pred CceEEEcCCcccccCCC---eEEEecHHH-HHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q psy16848 319 NMDIISGTLGKAFGNIG---GYIVGTKNF-IDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAY 394 (514)
Q Consensus 319 ~~di~~~S~sK~lg~~G---G~l~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 394 (514)
.+|++ |+||.+++ | |++++++++ ++.+.+..... +.+.+++.++++.++++.+..+. ..++.+++.++
T Consensus 240 ~~d~~--t~sK~~~~-G~~~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~aa~aal~~~~~~~---~~~~~~~~~~~ 311 (395)
T 3nx3_A 240 LPDIM--TSAKALGC-GLSVGAFVINQKVASNSLEAGDHGS--TYGGNPLVCAGVNAVFEIFKEEK---ILENVNKLTPY 311 (395)
T ss_dssp CCSEE--EECGGGTT-TSCCEEEEECHHHHHHHSCTTCCSS--CBSCCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHH
T ss_pred CCCEE--EecccccC-CCceEEEEEchhhhhhhcCCcccCC--CCCCCHHHHHHHHHHHHHHHhhH---HHHHHHHHHHH
Confidence 57877 78999976 5 999999998 88776554333 44778999999999998764433 45555556666
Q ss_pred HHHHHHhC----C-CccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHH
Q psy16848 395 LRNELIQI----G-FPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDK 469 (514)
Q Consensus 395 l~~~L~~~----g-~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~ 469 (514)
+++.|.+. . +....+.+.++++.+++.....++.+.|+ ++||.+.++. .+++|++++..+|++++++
T Consensus 312 ~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~-------~~~iRi~~~~~~t~e~i~~ 383 (395)
T 3nx3_A 312 LEQSLDELINEFDFCKKRKGLGFMQGLSLDKSVKVAKVIQKCQ-ENALLLISCG-------ENDLRFLPPLILQKEHIDE 383 (395)
T ss_dssp HHHHHHHHHHHCTTEEEEEEETTEEEEEECTTSCHHHHHHHHH-HTTEECEEET-------TTEEEECCCTTCCHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEeEEEEEEEEeCCcchHHHHHHHHH-HCCCEEecCC-------CCEEEEECCCCCCHHHHHH
Confidence 65555543 2 22334567788888876556788999996 8999998653 5699999999999999999
Q ss_pred HHHHHHHHHHH
Q psy16848 470 FVTDLLAVWKS 480 (514)
Q Consensus 470 ~~~~l~~~l~~ 480 (514)
++++|++++++
T Consensus 384 ~l~~l~~~l~~ 394 (395)
T 3nx3_A 384 MSEKLRKALKS 394 (395)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998864
No 38
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.97 E-value=7.1e-30 Score=259.07 Aligned_cols=335 Identities=11% Similarity=0.034 Sum_probs=244.2
Q ss_pred cCCceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEecccccc
Q psy16848 15 KSNRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSCYVAN 88 (514)
Q Consensus 15 ~~g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sGt~a~ 88 (514)
.+| .++||.++. +..+|.+.+++.+++.. ...+....|..++.+++++++.+.+|. +..+++++|++++
T Consensus 21 ~~g-~~i~l~~~~~~~~~~~~v~~a~~~~~~~----~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al 95 (376)
T 3ezs_A 21 PKK-RGLDLGIGEPQFETPKFIQDALKNHTHS----LNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVL 95 (376)
T ss_dssp CSS-CCCBCSSCCCCSCCCHHHHHHHHTTGGG----GGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHH
T ss_pred ccC-CEEEeCCCCCCCCCCHHHHHHHHHhhhh----cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHH
Confidence 466 889997544 22478888888877632 111222234567777777777776674 4567777788889
Q ss_pred ccchhhccccCC--CceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccch
Q psy16848 89 DSTLFTLGKMIP--GLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL 166 (514)
Q Consensus 89 ~~~l~~l~~~~~--gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
..++.++.. + ||.|+++.+.|.+....++..|.+++.++.++.+.+
T Consensus 96 ~~~~~~~~~--~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~------------------------------ 143 (376)
T 3ezs_A 96 FNFPSFVLF--DYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKENDF------------------------------ 143 (376)
T ss_dssp HHHHHHHTT--TCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTS------------------------------
T ss_pred HHHHHHHcC--CCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCCCCc------------------------------
Confidence 889888876 8 999999999999998888888887776654211000
Q ss_pred hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848 167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN 246 (514)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~ 246 (514)
+.
T Consensus 144 -----------------------------------------------------------------------------~~- 145 (376)
T 3ezs_A 144 -----------------------------------------------------------------------------TP- 145 (376)
T ss_dssp -----------------------------------------------------------------------------CC-
T ss_pred -----------------------------------------------------------------------------ch-
Confidence 00
Q ss_pred HHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCC----CccC
Q psy16848 247 HLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDG----QLHN 319 (514)
Q Consensus 247 ~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~----~~~~ 319 (514)
.+++.+.+ +++++++++|+||||.+++ +++|.++|++||+++|+||+|+.+..+....++..... ...+
T Consensus 146 ~l~~~~~~----~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (376)
T 3ezs_A 146 SLNEKELQ----EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFK 221 (376)
T ss_dssp CCCHHHHH----HCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCT
T ss_pred hHHhhhcc----CCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccC
Confidence 12222322 3688999999999999999 78888889999999999999995444332222221100 0236
Q ss_pred ceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q psy16848 320 MDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLR 396 (514)
Q Consensus 320 ~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 396 (514)
.++++.|+||.+|.+| ||+++++++++.+....... +.+.+++.+.++.++++. .+++++.+++++++++++.
T Consensus 222 ~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~ 297 (376)
T 3ezs_A 222 NVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYKAFRAYL--GYTSANAIQKASEAAWLD--DRHAEFFRNIYANNLKLAR 297 (376)
T ss_dssp TEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHHTTT--CCCCCHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEecchhccCCccceeEEEeeCHHHHHHHHHHHhhh--cCCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHH
Confidence 7899999999998657 99999999999988766554 346788888888888874 3457788889999999999
Q ss_pred HHHHhCCCccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCC-CCCCcEEEEEeCCCCCHHHHHHHHHHHH
Q psy16848 397 NELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTV-PVGEEKIRLAPTPFHTREMIDKFVTDLL 475 (514)
Q Consensus 397 ~~L~~~g~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~-~~~~~~iRl~~~~~~t~e~id~~~~~l~ 475 (514)
+.|+ ++. .+..+.++++.++ +..++.+.|++++||.+.++..|.. ....+++|++++ .+++++++++++|+
T Consensus 298 ~~l~--~~~-~~~~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~ 369 (376)
T 3ezs_A 298 KIFK--NTL-IYPYSFYVYLPVQ---NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALV--YDTPLLEKPLEIIE 369 (376)
T ss_dssp HHST--TCC-CCSBSSEEEEECS---CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECC--SCHHHHHHHHHHHH
T ss_pred HHhc--CCC-CCCcceEEEEECC---CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEc--CCHHHHHHHHHHHH
Confidence 9887 554 3344567778876 4678999997348999999987653 345789999998 38999999999999
Q ss_pred HHHHH
Q psy16848 476 AVWKS 480 (514)
Q Consensus 476 ~~l~~ 480 (514)
+++++
T Consensus 370 ~~l~~ 374 (376)
T 3ezs_A 370 TYREN 374 (376)
T ss_dssp HHHCC
T ss_pred HHHHh
Confidence 98754
No 39
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.97 E-value=4.4e-30 Score=262.23 Aligned_cols=334 Identities=20% Similarity=0.184 Sum_probs=246.4
Q ss_pred cCCceeeecccCCC---C--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccc
Q psy16848 15 KSNRVTCRLSSVQY---K--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND 89 (514)
Q Consensus 15 ~~g~~~~d~~~~~~---~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~ 89 (514)
.+|+.++|+.++.. + .+|++.+++.++++++..... .+..+..+++++++++++|.+++++++||++|+.
T Consensus 33 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~la~~~g~~~v~~~~~gt~a~~ 107 (392)
T 3ruy_A 33 PEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSR-----AFHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAVE 107 (392)
T ss_dssp TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCT-----TSEETTHHHHHHHHHHHHTCSEEEEESSHHHHHH
T ss_pred CCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhcccccc-----ccCCHHHHHHHHHHHHhcCCCEEEEeCcHHHHHH
Confidence 36788899965421 2 379999999999987544221 1345778999999999999888999999999999
Q ss_pred cchhhcccc--------CCCceEEecCccchhhhhhh-hcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc
Q psy16848 90 STLFTLGKM--------IPGLHYISDAGNHASMIQGI-RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT 160 (514)
Q Consensus 90 ~~l~~l~~~--------~~gd~v~~~~~~h~~~~~~~-~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 160 (514)
.++..+... .++|.|++..+.|++...+. ...+......
T Consensus 108 ~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 155 (392)
T 3ruy_A 108 TAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKR-------------------------------- 155 (392)
T ss_dssp HHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTT--------------------------------
T ss_pred HHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhcc--------------------------------
Confidence 999876542 23779999888886654333 2222111000
Q ss_pred CCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEe
Q psy16848 161 GAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIY 240 (514)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v 240 (514)
.+......+..+
T Consensus 156 --------------------------------------------------------------------~~~~~~~~~~~~ 167 (392)
T 3ruy_A 156 --------------------------------------------------------------------GFGPMLPGIIVI 167 (392)
T ss_dssp --------------------------------------------------------------------TCCSCCSSEEEE
T ss_pred --------------------------------------------------------------------ccCCCCCCCeee
Confidence 000001124455
Q ss_pred cCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCC
Q psy16848 241 RHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDG 315 (514)
Q Consensus 241 ~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~ 315 (514)
+.+|.+.+++.++ +++++|++++++||+|.++| +++|.++|++||+++|+||+|+ ++..|... ..+..+
T Consensus 168 ~~~d~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~--~~~~~~ 241 (392)
T 3ruy_A 168 PYGDLEALKAAIT----PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVF--ACDWDN 241 (392)
T ss_dssp CTTCHHHHHHHCC----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSS--GGGGGT
T ss_pred CcccHHHHHHHhc----cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccch--hhhccC
Confidence 6667777777765 56899999999999999998 9999999999999999999997 44443321 112222
Q ss_pred CccCceEEEcCCcccccC---CCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q psy16848 316 QLHNMDIISGTLGKAFGN---IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIV 392 (514)
Q Consensus 316 ~~~~~di~~~S~sK~lg~---~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 392 (514)
..+|++ |+||++++ .+|++++++++++.+....... +.+.+++.++++.++++.+.. ++.++++++++
T Consensus 242 --~~~d~~--~~SK~l~gG~~~~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~ 312 (392)
T 3ruy_A 242 --VTPDMY--ILGKALGGGVFPISCAAANRDILGVFEPGSHGS--TFGGNPLACAVSIAALEVLEE---EKLTERSLQLG 312 (392)
T ss_dssp --CCCSEE--EECGGGGTTTSCCEEEEECHHHHTTCCTTSSCC--SSTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHH
T ss_pred --CCCCEE--EEchhhhCChhhhEEEEECHHHHhhhccCCcCC--CCCCCHHHHHHHHHHHHHHHh---hhHHHHHHHHH
Confidence 257887 77899976 2499999998888776655444 447889999999999987644 35888999999
Q ss_pred HHHHHHHHhCCCc---cccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHH
Q psy16848 393 AYLRNELIQIGFP---VEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDK 469 (514)
Q Consensus 393 ~~l~~~L~~~g~~---~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~ 469 (514)
+++.+.|++++.+ ...+.+.++.+.++. +..++.+.|. ++||.+.++. .+++|++++..++++++++
T Consensus 313 ~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~--~~~~l~~~l~-~~gi~v~~~~-------~~~iRi~~~~~~~~~~i~~ 382 (392)
T 3ruy_A 313 EKLVGQLKEIDNPMITEVRGKGLFIGIELNE--PARPYCEQLK-AAGLLCKETH-------ENVIRIAPPLVISEEDLEW 382 (392)
T ss_dssp HHHHHHHTTCCCTTEEEEEEETTEEEEEESS--CSHHHHHHHH-TTTEECCCBT-------TTEEEECCCTTCCHHHHHH
T ss_pred HHHHHHHHHhcCCCceEEEeeeeEEEEEEcc--hHHHHHHHHH-HCCcEEecCC-------CCEEEEECCCCCCHHHHHH
Confidence 9999999987533 334567788887765 5678999996 9999998543 5699999998999999999
Q ss_pred HHHHHHHHH
Q psy16848 470 FVTDLLAVW 478 (514)
Q Consensus 470 ~~~~l~~~l 478 (514)
++++|++++
T Consensus 383 ~~~~l~~~l 391 (392)
T 3ruy_A 383 AFQKIKAVL 391 (392)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999875
No 40
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.97 E-value=1.6e-29 Score=258.08 Aligned_cols=336 Identities=15% Similarity=0.147 Sum_probs=241.2
Q ss_pred CCceeeecccCCCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEeccccccc
Q psy16848 16 SNRVTCRLSSVQYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSCYVAND 89 (514)
Q Consensus 16 ~g~~~~d~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sGt~a~~ 89 (514)
+|+.++||.++.+. .+|.+.+++.++++..... +....+..++.+++.+.+.+.+|. +..++++||++|+.
T Consensus 39 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~---y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~ 115 (389)
T 1o4s_A 39 KGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVK---YTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALF 115 (389)
T ss_dssp TTCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCC---CCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEEccCCCCCCCCCHHHHHHHHHHHhcCCCC---CCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHH
Confidence 57788999766542 3688999999988652211 111223445555555555544453 35677778889999
Q ss_pred cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848 90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL 169 (514)
Q Consensus 90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
.++.++.. +||.|+++.+.|.+....++..|.+++.++.+..+
T Consensus 116 ~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~----------------------------------- 158 (389)
T 1o4s_A 116 NAFMALLD--PGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSK----------------------------------- 158 (389)
T ss_dssp HHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGG-----------------------------------
T ss_pred HHHHHhCC--CCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCcc-----------------------------------
Confidence 99988865 99999999999999888777777766655431000
Q ss_pred hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848 170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT 249 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~ 249 (514)
+. ..|.+.++
T Consensus 159 -------------------------~~---------------------------------------------~~d~~~l~ 168 (389)
T 1o4s_A 159 -------------------------NF---------------------------------------------QPSLEEVE 168 (389)
T ss_dssp -------------------------TT---------------------------------------------CCCHHHHH
T ss_pred -------------------------CC---------------------------------------------CCCHHHHH
Confidence 00 00333333
Q ss_pred HHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcC
Q psy16848 250 QVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT 326 (514)
Q Consensus 250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S 326 (514)
+.+ +++++++++++++||+|.++| +++|.++|+++|+++|+||+|+.+..+....++..... ..+.|++++|
T Consensus 169 ~~l----~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~-~~~~~i~~~s 243 (389)
T 1o4s_A 169 GLL----VGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSE-GFDRIVYING 243 (389)
T ss_dssp HTC----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCS-SSTTEEEEEE
T ss_pred Hhc----ccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCC-CCCcEEEEee
Confidence 333 346889999999999999998 89999999999999999999996544322212222221 1368999999
Q ss_pred CcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC
Q psy16848 327 LGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIG 403 (514)
Q Consensus 327 ~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 403 (514)
+||++|.+| ||+++++++++.+....... +.+.++..+.++.++++. ..++.+++++++++++.+.|++.|
T Consensus 244 ~sK~~~~~G~r~G~l~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~l~~~L~~~g 317 (389)
T 1o4s_A 244 FSKSHSMTGWRVGYLISSEKVATAVSKIQSHT--TSCINTVAQYAALKALEV----DNSYMVQTFKERKNFVVERLKKMG 317 (389)
T ss_dssp STTTTTCGGGCCEEEECCHHHHHHHHHHHHHH--TCSCCHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chhhcCCcccceEEEEeCHHHHHHHHHHhhhc--ccCCCHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999998656 99999999988887655443 335677777777666642 256788999999999999999988
Q ss_pred CccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848 404 FPVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK 479 (514)
Q Consensus 404 ~~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~ 479 (514)
+++..+.++ ++++.++ .+..++.+.|++++||.+.++..+.. ++++|++++ .+++++++++++|+++++
T Consensus 318 ~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~gi~v~~g~~f~~---~~~~Ris~~--~~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 318 VKFVEPEGAFYLFFKVR--GDDVKFCERLLEEKKVALVPGSAFLK---PGFVRLSFA--TSIERLTEALDRIEDFLN 387 (389)
T ss_dssp CCCCCCSBSSEEEEECS--SCHHHHHHHHHHHHCEECEEGGGGTC---TTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred CeeecCCcceEEEEeCC--CCHHHHHHHHHHHCCEEEeCchhcCC---CCeEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 877666544 5566776 34678888885588999999876442 359999998 489999999999998764
No 41
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.97 E-value=8e-30 Score=264.15 Aligned_cols=307 Identities=11% Similarity=0.035 Sum_probs=224.3
Q ss_pred HHHHHHHHhHcC----------CCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhh-cCCCCeeeccCC
Q psy16848 63 EKLEEDVAKLHQ----------KEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIR-NSSAPKIIYRHN 131 (514)
Q Consensus 63 ~~~~~~la~~~~----------~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~-~~~~~~~~~~~~ 131 (514)
.++++.++++++ .+++++++||++|+..++.++.+ +||.|+++.+.|.+...+++ ..|.+++.++.+
T Consensus 89 ~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~ 166 (435)
T 3piu_A 89 PAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLAD--PGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCT 166 (435)
T ss_dssp HHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCC--TTCEEEEEESCCTTHHHHTTTTTCCEEEEEECC
T ss_pred HHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcC--CCCeEEECCCccccHHHHHHHhcCCEEEEeeCC
Confidence 566666666665 45678888999999999999876 99999999999999998887 678887776653
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHH
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDII 211 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~ 211 (514)
+... |
T Consensus 167 ~~~~---------------------~------------------------------------------------------ 171 (435)
T 3piu_A 167 SSNG---------------------F------------------------------------------------------ 171 (435)
T ss_dssp GGGT---------------------S------------------------------------------------------
T ss_pred CccC---------------------C------------------------------------------------------
Confidence 1000 0
Q ss_pred HhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhc--cCCCceEEEEecCCCCCccccC---HHHHHHHHH
Q psy16848 212 SGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENM--DVKIPKLVAFETVHSMTGAICP---LKELCEVSH 286 (514)
Q Consensus 212 ~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~--~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~ 286 (514)
..|.+.+++.+++. ...++++|++++|+||||.+++ +++|+++|+
T Consensus 172 ------------------------------~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~ 221 (435)
T 3piu_A 172 ------------------------------QITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVE 221 (435)
T ss_dssp ------------------------------CCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred ------------------------------cCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 01445555555442 1235789999999999999998 588999999
Q ss_pred HcCCEEEEeccccccccCC-CCCCccccCC---Cc-----cCceEEEcCCcccccCCC---eEEEe-cHHHHHHHHhhcC
Q psy16848 287 QHGALTFVDEVHAVGLYGE-HGAGIGERDG---QL-----HNMDIISGTLGKAFGNIG---GYIVG-TKNFIDTIRSYAA 353 (514)
Q Consensus 287 ~~gv~li~Dea~~~g~~g~-~~~~~~~~~~---~~-----~~~di~~~S~sK~lg~~G---G~l~~-~~~~~~~l~~~~~ 353 (514)
+||+++|+||+|+.+.++. ...++..... .+ .+.+++++|+||.+|.+| |++++ ++.+.+.+.....
T Consensus 222 ~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~ 301 (435)
T 3piu_A 222 DKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS 301 (435)
T ss_dssp HHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGG
T ss_pred HcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHHhh
Confidence 9999999999999544332 2211111100 00 355689999999998657 99988 5667777765443
Q ss_pred ceEeccCCcHHHHHHHHHHHHHhh--hchHHHHHHHHHHHHHHHHHHHHhCCCccccCCC-cEEEEEeCCCc------cH
Q psy16848 354 GFIFTTSLPPTVLAGAREAIRILS--SQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPS-HIIPIKIGNPA------LN 424 (514)
Q Consensus 354 ~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~i~l~~~~------~~ 424 (514)
.+ ..+++.+.++.+.++... .+.+++.+++++++++++.+.|++.|+++..+.+ .++++.++... ..
T Consensus 302 ~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~l~~~~~~~~~~~~ 377 (435)
T 3piu_A 302 FG----LVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAE 377 (435)
T ss_dssp GS----CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSSSSHHHH
T ss_pred cC----CCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCeeEEEEEEcccccccCCchhH
Confidence 32 456777777777665321 3355678889999999999999998888777766 57788876532 45
Q ss_pred HHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848 425 TKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 425 ~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~ 482 (514)
.++.+.|++++||.+.++..+. +.+++++|++++.. +++++++++++|+++++++.
T Consensus 378 ~~~~~~l~~~~gi~v~~g~~~~-~~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~~~ 433 (435)
T 3piu_A 378 MELWKKIVYEVHLNISPGSSCH-CTEPGWFRVCFANL-PERTLDLAMQRLKAFVGEYY 433 (435)
T ss_dssp HHHHHHHHHTSCEECEEGGGGT-CSSTTEEEEECSSS-CHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCEEEeCCcccC-CCCCCEEEEEeeCC-CHHHHHHHHHHHHHHHHHHh
Confidence 6888888745599999988654 34578999999744 99999999999999988753
No 42
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.97 E-value=1.4e-29 Score=259.86 Aligned_cols=345 Identities=14% Similarity=0.098 Sum_probs=247.6
Q ss_pred hhcCCceeeecccCCC-----CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEec
Q psy16848 13 VHKSNRVTCRLSSVQY-----KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTS 83 (514)
Q Consensus 13 ~~~~g~~~~d~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~s 83 (514)
...+|+.++||..+.. ..+|++.+++.+++..... .+....|..++.+++.+.+.+.+| .+.+++++|
T Consensus 33 ~~~~g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~~---~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g 109 (406)
T 1xi9_A 33 LEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHN---YYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAA 109 (406)
T ss_dssp HHHTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCC---SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESH
T ss_pred HHHcCCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCCC---CCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCC
Confidence 3346778899976655 3468999999998875211 111122334555555555555433 245677778
Q ss_pred cccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCc
Q psy16848 84 CYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAI 163 (514)
Q Consensus 84 Gt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
|++|+..++.++.. +||.|+++.++|.+...+++..|.+++.++.+..+
T Consensus 110 ~~~al~~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~----------------------------- 158 (406)
T 1xi9_A 110 VTEALQLIFGALLD--PGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEE----------------------------- 158 (406)
T ss_dssp HHHHHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGG-----------------------------
T ss_pred hHHHHHHHHHHhCC--CCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCc-----------------------------
Confidence 89999999988865 99999999999999888777777766544321000
Q ss_pred cchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC
Q psy16848 164 CPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN 243 (514)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~ 243 (514)
+. ..
T Consensus 159 -------------------------------~~---------------------------------------------~~ 162 (406)
T 1xi9_A 159 -------------------------------DW---------------------------------------------QP 162 (406)
T ss_dssp -------------------------------TS---------------------------------------------EE
T ss_pred -------------------------------CC---------------------------------------------cC
Confidence 00 00
Q ss_pred ChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCc
Q psy16848 244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM 320 (514)
Q Consensus 244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~ 320 (514)
|.+.+++.++ +++++|++++++||||.+++ +++|.++|++||+++|+||+|+.+..+....++.... .+.
T Consensus 163 d~~~l~~~l~----~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~---~~~ 235 (406)
T 1xi9_A 163 DIDDIRKKIT----DRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLT---KDV 235 (406)
T ss_dssp CHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHC---SSS
T ss_pred CHHHHHHhhC----cCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcC---CCc
Confidence 3444444443 35889999999999999988 8999999999999999999999654432222222221 356
Q ss_pred -eEEEcCCcccccCCC---eEEE--ecH----HHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q psy16848 321 -DIISGTLGKAFGNIG---GYIV--GTK----NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQD 390 (514)
Q Consensus 321 -di~~~S~sK~lg~~G---G~l~--~~~----~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 390 (514)
|++++|+||+++.+| |+++ +++ ++++.+....... .+.++..+.++.++++.. .+.++++++++++
T Consensus 236 ~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~ 311 (406)
T 1xi9_A 236 PVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIR---LCPNTPAQFAAIAGLTGP-MDYLKEYMKKLKE 311 (406)
T ss_dssp CEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHT---CCSCSHHHHHHHHHHHSC-CHHHHHHHHHHHH
T ss_pred eEEEEeccccccCCCccEEEEEEEecCchhHHHHHHHHHHHHHhh---cCCCHHHHHHHHHHHhCC-cHHHHHHHHHHHH
Confidence 899999999998656 9988 888 8888887654332 256777788888888643 3346788899999
Q ss_pred HHHHHHHHHHhC-CCccccCCCc-EEEEEeCC--CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHH
Q psy16848 391 IVAYLRNELIQI-GFPVEHTPSH-IIPIKIGN--PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREM 466 (514)
Q Consensus 391 ~~~~l~~~L~~~-g~~~~~~~~~-~~~i~l~~--~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~ 466 (514)
+++++.+.|++. ++.+..+.++ ++++.++. ..+..++.+.|++++||.+.++..+.. .+.+++|++++ +++++
T Consensus 312 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~-~~~~~lRis~~--~~~~~ 388 (406)
T 1xi9_A 312 RRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGE-YGAGHFRAVFL--PPIEI 388 (406)
T ss_dssp HHHHHHHHHHTSTTEECCCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCG-GGTTBEEEECC--SCHHH
T ss_pred HHHHHHHHHHhCCCCeeecCCeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCC-CCCCEEEEEec--CCHHH
Confidence 999999999988 7776666555 44456664 345778888885588999999876442 33579999998 88999
Q ss_pred HHHHHHHHHHHHHHc
Q psy16848 467 IDKFVTDLLAVWKSL 481 (514)
Q Consensus 467 id~~~~~l~~~l~~~ 481 (514)
+++++++|+++++++
T Consensus 389 i~~~~~~l~~~l~~~ 403 (406)
T 1xi9_A 389 LEEAMDRFEKFMKER 403 (406)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998765
No 43
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.97 E-value=2.3e-29 Score=258.57 Aligned_cols=342 Identities=15% Similarity=0.108 Sum_probs=245.7
Q ss_pred hcCCceeeecccCCCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccccc
Q psy16848 14 HKSNRVTCRLSSVQYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVA 87 (514)
Q Consensus 14 ~~~g~~~~d~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a 87 (514)
..+|+.++||.++.+. .+|.+.+++ ++++.... .+....+..++.+++.+.+.+.+| .+.+++++||++|
T Consensus 39 ~~~g~~~i~l~~~~~~~~~~~~v~~a~-~~l~~~~~---~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a 114 (409)
T 2gb3_A 39 KKRGVRIHHLNIGQPDLKTPEVFFERI-YENKPEVV---YYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEA 114 (409)
T ss_dssp HHTTCEEEECSSCCCCSCCCTHHHHHH-HHTCCSSC---CCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHH
T ss_pred HhcCCCEEeccCCCCCCCCCHHHHHHH-HHHhcCCC---CCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHH
Confidence 3467889999776653 367899988 87754111 111122334444444444444333 2567778889999
Q ss_pred cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848 88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK 167 (514)
Q Consensus 88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
+..++.++.. +||.|+++.+.|.+...+++..|.+++.++.++.
T Consensus 115 ~~~~~~~~~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~---------------------------------- 158 (409)
T 2gb3_A 115 ILFSFAVIAN--PGDEILVLEPFYANYNAFAKIAGVKLIPVTRRME---------------------------------- 158 (409)
T ss_dssp HHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGG----------------------------------
T ss_pred HHHHHHHhCC--CCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCC----------------------------------
Confidence 9999988865 9999999999999998887777777665543210
Q ss_pred HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848 168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH 247 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~ 247 (514)
+++..
T Consensus 159 ---------------------------------------------------------------------------~~~~~ 163 (409)
T 2gb3_A 159 ---------------------------------------------------------------------------EGFAI 163 (409)
T ss_dssp ---------------------------------------------------------------------------GTSCC
T ss_pred ---------------------------------------------------------------------------CCCcc
Confidence 01111
Q ss_pred HHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEE
Q psy16848 248 LTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS 324 (514)
Q Consensus 248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~ 324 (514)
.+.+++..+++++++++++++||+|.++| +++|.++|+++|+++|+||+|+.+..+....++ ..+ ..+.|+++
T Consensus 164 -~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~--~~~-~~~~~i~~ 239 (409)
T 2gb3_A 164 -PQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA--LSI-ESDKVVVI 239 (409)
T ss_dssp -CTTGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG--GGS-CCTTEEEE
T ss_pred -HHHHHHhhCcCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc--ccc-CCCCEEEE
Confidence 12233333446899999999999999987 899999999999999999999965443222122 111 13579999
Q ss_pred cCCcccccCCC---eEEEecH-HHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q psy16848 325 GTLGKAFGNIG---GYIVGTK-NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI 400 (514)
Q Consensus 325 ~S~sK~lg~~G---G~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 400 (514)
+|+||++|.+| |++++++ ++++.+......+ + +.++..+.++.++|+.. ..++++++++++++++++.+.|+
T Consensus 240 ~s~sK~~g~~G~r~G~~~~~~~~l~~~l~~~~~~~--~-~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~ 315 (409)
T 2gb3_A 240 DSVSKKFSACGARVGCLITRNEELISHAMKLAQGR--L-APPLLEQIGSVGLLNLD-DSFFDFVRETYRERVETVLKKLE 315 (409)
T ss_dssp EESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHHS--C-CCCHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchhccCCccceEEEEEECcHHHHHHHHHHHhcc--C-CCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998656 9999988 8988887655443 3 66788888888888542 34567788999999999999999
Q ss_pred hCCCcc-ccCCCc-EEEEEeCCCccHHHHHHHHHHhC------CeEEecccCCCC--CCCCcEEEEEeCCCCCHHHHHHH
Q psy16848 401 QIGFPV-EHTPSH-IIPIKIGNPALNTKICDMLLKEK------GHYVQPINYPTV--PVGEEKIRLAPTPFHTREMIDKF 470 (514)
Q Consensus 401 ~~g~~~-~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~------GI~v~~~~~~~~--~~~~~~iRl~~~~~~t~e~id~~ 470 (514)
+.|+.+ ..+.++ ++++.++ ..+..++.+.|+ ++ ||.+.++..+.. ..+.+++|++++ +++++++++
T Consensus 316 ~~g~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~-~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~~~ 391 (409)
T 2gb3_A 316 EHGLKRFTKPSGAFYITAELP-VEDAEEFARWML-TDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRA 391 (409)
T ss_dssp HTTCCCBCCCSBSSEEEEECS-SSCHHHHHHHHH-HSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHH
T ss_pred HcCceeeeCCCeeEEEEEEeC-CCCHHHHHHHHH-hccccccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHHHH
Confidence 888877 555544 5566776 345788999996 55 999999875443 134679999998 799999999
Q ss_pred HHHHHHHHHHcC
Q psy16848 471 VTDLLAVWKSLD 482 (514)
Q Consensus 471 ~~~l~~~l~~~~ 482 (514)
+++|+++++++.
T Consensus 392 ~~~l~~~l~~~~ 403 (409)
T 2gb3_A 392 IDVLMEGLKMFC 403 (409)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999988763
No 44
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.97 E-value=1.8e-29 Score=260.29 Aligned_cols=357 Identities=15% Similarity=0.109 Sum_probs=251.6
Q ss_pred CceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC-----CcEEEEeccccccc
Q psy16848 17 NRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK-----EAGLVFTSCYVAND 89 (514)
Q Consensus 17 g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~i~~~sGt~a~~ 89 (514)
+..++||+.+. +..+|.+.+++.+++.+.. ....+....|..++.+++++++.+.+|. +.+++++||++++.
T Consensus 27 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~-~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~ 105 (422)
T 3fvs_A 27 EHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDF-MLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALF 105 (422)
T ss_dssp TSCCEECCCSSCSSCCCHHHHHHHHHHHHSCG-GGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHH
T ss_pred cCCceEeCCCCCCCCCCHHHHHHHHHHHhCCC-ccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHH
Confidence 45678886544 3357899999999988621 0111222234456666666666666553 35677778889999
Q ss_pred cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848 90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL 169 (514)
Q Consensus 90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
.++.++.. +||.|+++.+.|.+....++..|.+++.++.....
T Consensus 106 ~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~----------------------------------- 148 (422)
T 3fvs_A 106 TAFQALVD--EGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGP----------------------------------- 148 (422)
T ss_dssp HHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCC-----------------------------------
T ss_pred HHHHHHcC--CCCEEEEcCCCchhhHHHHHHcCCEEEEEeccccc-----------------------------------
Confidence 99988866 99999999999999888888888777655431000
Q ss_pred hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848 170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT 249 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~ 249 (514)
...|.. ...+++..+.
T Consensus 149 ------------------------~~~G~~----------------------------------------~~~~~~~~d~ 164 (422)
T 3fvs_A 149 ------------------------IQNGEL----------------------------------------GSSSNWQLDP 164 (422)
T ss_dssp ------------------------CCSSSC----------------------------------------CBGGGSBCCH
T ss_pred ------------------------cccccc----------------------------------------ccccCCCCCH
Confidence 000000 0000111122
Q ss_pred HHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEc
Q psy16848 250 QVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISG 325 (514)
Q Consensus 250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~ 325 (514)
+.+++..+++++++++++++||||.+++ +++|.++|++||+++|+||+|+.+.. +....++..... ..+.++++.
T Consensus 165 ~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~ 243 (422)
T 3fvs_A 165 MELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPG-MWERTLTIG 243 (422)
T ss_dssp HHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT-TGGGEEEEE
T ss_pred HHHHhhcCCCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhccc-ccCcEEEEe
Confidence 3344444457899999999999999996 89999999999999999999995433 322222222221 236789999
Q ss_pred CCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHh------hhchHHHHHHHHHHHHHHHH
Q psy16848 326 TLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRIL------SSQEGVELRAKHQDIVAYLR 396 (514)
Q Consensus 326 S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~~l~ 396 (514)
|+||.+|.+| ||+++++++++.+....... +.+.++..+.++.++++.. ...++++.+++++++++++.
T Consensus 244 S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 321 (422)
T 3fvs_A 244 SAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNS--VFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMI 321 (422)
T ss_dssp EHHHHHTCGGGCCEEEECCHHHHHHHHHHHHTT--TCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred cchhccCCccceEEEEEeCHHHHHHHHHHHhhc--cCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHH
Confidence 9999998657 99999999998887655433 3367888888888888741 24567889999999999999
Q ss_pred HHHHhCCCccccCCC-cEEEEEeCCCc---c----------HHHHHHHHHHhCCeEEecccCCCC----CCCCcEEEEEe
Q psy16848 397 NELIQIGFPVEHTPS-HIIPIKIGNPA---L----------NTKICDMLLKEKGHYVQPINYPTV----PVGEEKIRLAP 458 (514)
Q Consensus 397 ~~L~~~g~~~~~~~~-~~~~i~l~~~~---~----------~~~~~~~Ll~~~GI~v~~~~~~~~----~~~~~~iRl~~ 458 (514)
+.|++.|+.+..+.+ .++++.++... . ..+++..+++++||.+.++..|.. +.+.+++|+++
T Consensus 322 ~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~ 401 (422)
T 3fvs_A 322 RSLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCF 401 (422)
T ss_dssp HHHHTTTCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEEC
T ss_pred HHHHHcCCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEe
Confidence 999999888665554 46666654210 0 457888877678999999886543 24578999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q psy16848 459 TPFHTREMIDKFVTDLLAVWKS 480 (514)
Q Consensus 459 ~~~~t~e~id~~~~~l~~~l~~ 480 (514)
+. +++++++++++|++++++
T Consensus 402 ~~--~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 402 VK--DEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp CC--CHHHHHHHHHHHHHHHHC
T ss_pred cC--CHHHHHHHHHHHHHHHhh
Confidence 84 999999999999998865
No 45
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-29 Score=263.72 Aligned_cols=354 Identities=16% Similarity=0.137 Sum_probs=247.6
Q ss_pred CCceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEeccccccc
Q psy16848 16 SNRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSCYVAND 89 (514)
Q Consensus 16 ~g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sGt~a~~ 89 (514)
.+..++||..+. +..+|.+.+++.++++..+. ..+....|..++.+++.+++.+.+|. +.++++++|++|+.
T Consensus 55 ~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~--~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~ 132 (447)
T 3b46_A 55 QGRELINLGQGFFSYSPPQFAIKEAQKALDIPMV--NQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGIL 132 (447)
T ss_dssp TTSCCEECCCCSCSSCCCHHHHHHHHHHTTSGGG--GSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHH
T ss_pred cCCCeEEccCCCCCCCCCHHHHHHHHHHHhCcCC--CCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHH
Confidence 466789996543 33478999999998875221 11222234556666666666655553 34666777789999
Q ss_pred cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848 90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL 169 (514)
Q Consensus 90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
.++.++.. +||.|+++.+.|.+....++..|.+++.++....+.
T Consensus 133 ~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~---------------------------------- 176 (447)
T 3b46_A 133 SCLMGLLN--AGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKE---------------------------------- 176 (447)
T ss_dssp HHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGG----------------------------------
T ss_pred HHHHHHcC--CCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccc----------------------------------
Confidence 99988866 999999999999999888888887766543210000
Q ss_pred hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848 170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT 249 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~ 249 (514)
|..+.. ...++..+.
T Consensus 177 -------------------~~~~~~----------------------------------------------~~~~~~~d~ 191 (447)
T 3b46_A 177 -------------------LDQRNT----------------------------------------------RGEEWTIDF 191 (447)
T ss_dssp -------------------GGTSCB----------------------------------------------CSTTSEECH
T ss_pred -------------------cccccc----------------------------------------------cccCcccCH
Confidence 000000 000111122
Q ss_pred HHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcC
Q psy16848 250 QVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT 326 (514)
Q Consensus 250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S 326 (514)
+.+++..++++++|++++++||||.+++ +++|.++|++||+++|+||+|+.+.++....++.....-..+.+++++|
T Consensus 192 ~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S 271 (447)
T 3b46_A 192 EQFEKAITSKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGS 271 (447)
T ss_dssp HHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEE
T ss_pred HHHHHhhccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEec
Confidence 3333333467899999999999999987 8999999999999999999999544332222222220002367999999
Q ss_pred CcccccCCC---eEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhh-hchHHHHHHHHHHHHHHHHHHHHh
Q psy16848 327 LGKAFGNIG---GYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS-SQEGVELRAKHQDIVAYLRNELIQ 401 (514)
Q Consensus 327 ~sK~lg~~G---G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 401 (514)
+||+++.+| ||+++ ++++++.+....... +.+.+++.+.++.++|+... ..++++++++++++++++.+.|++
T Consensus 272 ~sK~~~~~G~riG~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 349 (447)
T 3b46_A 272 AGKSFAATGWRIGWVLSLNAELLSYAAKAHTRI--CFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDE 349 (447)
T ss_dssp HHHHTTCTTSCCEEEECSCHHHHHHHHHHHHHH--TSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhcCCcchhhEEEEeCCHHHHHHHHHHHhhc--cCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998667 99999 999998887654333 33567888888888887642 345788899999999999999998
Q ss_pred CCCccccCC-CcEEEEEeCCC---------------ccHHHHHHHHHHhCCeEEecccCCCCCC----CCcEEEEEeCCC
Q psy16848 402 IGFPVEHTP-SHIIPIKIGNP---------------ALNTKICDMLLKEKGHYVQPINYPTVPV----GEEKIRLAPTPF 461 (514)
Q Consensus 402 ~g~~~~~~~-~~~~~i~l~~~---------------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~----~~~~iRl~~~~~ 461 (514)
+|+++..+. +.++++.++.. .+..++++.|++++||.+.|+..+.... +.+++|++++
T Consensus 350 ~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~-- 427 (447)
T 3b46_A 350 LGLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVC-- 427 (447)
T ss_dssp HTCCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECC--
T ss_pred CCCeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEe--
Confidence 888876665 44667777642 3456888888657899999987544321 2679999998
Q ss_pred CCHHHHHHHHHHHHH
Q psy16848 462 HTREMIDKFVTDLLA 476 (514)
Q Consensus 462 ~t~e~id~~~~~l~~ 476 (514)
.+++++++++++|++
T Consensus 428 ~~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 428 KDDAYLENAVERLKL 442 (447)
T ss_dssp SCHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHH
Confidence 489999999999876
No 46
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.97 E-value=1.8e-29 Score=263.84 Aligned_cols=345 Identities=13% Similarity=0.089 Sum_probs=242.8
Q ss_pred cCCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEeccccc
Q psy16848 15 KSNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVA 87 (514)
Q Consensus 15 ~~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a 87 (514)
.+|+.|+||.++ ..++ ||+|++++.+++++..+..+ ...+..+...+++++++++++ .++++|++||++|
T Consensus 52 ~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~---~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA 128 (472)
T 3hmu_A 52 SEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNT---FFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEA 128 (472)
T ss_dssp TTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCS---SSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHH
T ss_pred CCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcccccc---ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHH
Confidence 377888999654 4455 79999999999998653222 222346788999999999984 5678889999999
Q ss_pred cccchhhcccc-------CCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc
Q psy16848 88 NDSTLFTLGKM-------IPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT 160 (514)
Q Consensus 88 ~~~~l~~l~~~-------~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 160 (514)
+..+++.+... ++...|..++.+|.....+....+.....
T Consensus 129 ~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~--------------------------------- 175 (472)
T 3hmu_A 129 NDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMH--------------------------------- 175 (472)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHH---------------------------------
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhc---------------------------------
Confidence 99999877531 12334445555565555444443321100
Q ss_pred CCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEe
Q psy16848 161 GAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIY 240 (514)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v 240 (514)
..+. ....+..+
T Consensus 176 -------------------------------------------------------------------~~~~-~~~~~~~v 187 (472)
T 3hmu_A 176 -------------------------------------------------------------------AQSG-LIPDVHHI 187 (472)
T ss_dssp -------------------------------------------------------------------HTTC-CCSSEEEE
T ss_pred -------------------------------------------------------------------cccC-CCCCcEEe
Confidence 0000 00011111
Q ss_pred c--C----C---C--------hhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc
Q psy16848 241 R--H----N---D--------VNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA 299 (514)
Q Consensus 241 ~--~----~---d--------~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~ 299 (514)
+ . + + .+.+++.+++...+++++|++++++|++|.+.+ +++|+++|++||++||+||+|+
T Consensus 188 ~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~ 267 (472)
T 3hmu_A 188 NQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVIC 267 (472)
T ss_dssp CCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred CCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc
Confidence 1 1 1 1 566777776544456899999999999999887 9999999999999999999999
Q ss_pred -ccccCCCCCCccccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHH
Q psy16848 300 -VGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRI 375 (514)
Q Consensus 300 -~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~ 375 (514)
+|..|..+ ..+..+. .+|++ +|+|++++.| |++++++++++.+.........+++.+++.++++.++|+.
T Consensus 268 gfgr~G~~~--a~~~~~v--~pdi~--t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~ 341 (472)
T 3hmu_A 268 GFGRTGNWF--GTQTMGI--RPHIM--TIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRI 341 (472)
T ss_dssp TTTTTSSSC--HHHHHTC--CCSEE--EECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHH
T ss_pred CCcccCccc--hhHHhCC--CCcee--eechhhhcCCcceEEEEECHHHHHhcccCCccccCCCCCCHHHHHHHHHHHHH
Confidence 66655322 1233343 68888 7889998744 9999999999988422112223567899999999999998
Q ss_pred hhhchHHHHHHHHH-HHHHHHHHHHHhC-CCc---cccCCCcEEEEEeCCC------------ccHHHHHHHHHHhCCeE
Q psy16848 376 LSSQEGVELRAKHQ-DIVAYLRNELIQI-GFP---VEHTPSHIIPIKIGNP------------ALNTKICDMLLKEKGHY 438 (514)
Q Consensus 376 ~~~~~~~~~~~~~~-~~~~~l~~~L~~~-g~~---~~~~~~~~~~i~l~~~------------~~~~~~~~~Ll~~~GI~ 438 (514)
+.++. +.++++ ++.+++++.|+++ .++ .+.+.+.++.+.+... ....++++.|+ ++||.
T Consensus 342 ~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~ 417 (472)
T 3hmu_A 342 LEEEN---ILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCF-ANNLI 417 (472)
T ss_dssp HHHTT---HHHHHHHTHHHHHHHHHHGGGGSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHH-HTTBC
T ss_pred HHHhH---HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceEEEEEecCccccccccchhHHHHHHHHHHHH-HCCcE
Confidence 75444 677788 8888888888765 222 3345677888877532 11567888886 89999
Q ss_pred EecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 439 VQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 439 v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
+.++. +++|++++..+|++++++++++|+++++++
T Consensus 418 v~~~g--------~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~ 452 (472)
T 3hmu_A 418 MRHVG--------DRMIISPPLVITPAEIDEMFVRIRKSLDEA 452 (472)
T ss_dssp CEEET--------TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEecC--------CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 98642 689999999999999999999999988765
No 47
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.97 E-value=1.6e-29 Score=257.52 Aligned_cols=338 Identities=16% Similarity=0.133 Sum_probs=245.2
Q ss_pred ceeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----C-cEEEEecccccccc
Q psy16848 18 RVTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----E-AGLVFTSCYVANDS 90 (514)
Q Consensus 18 ~~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~-~~i~~~sGt~a~~~ 90 (514)
..++||..+.+ ..+|.+.+++.++++.... .+....|..++.+++.+.+.+.+|. + ..+++++|++|+..
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~---~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~ 106 (386)
T 1u08_A 30 HQAINLSQGFPDFDGPRYLQERLAHHVAQGAN---QYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYA 106 (386)
T ss_dssp TTCEECCCSSCSSCCCHHHHHHHHHHHHTTCC---SCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHHhhcc---CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHH
Confidence 35789876554 2478999999999875211 1112224456666666666665563 3 66777778889999
Q ss_pred chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848 91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 170 (514)
Q Consensus 91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
++.++.. +||.|+++.+.|.+....++..|.+++.++....
T Consensus 107 ~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~------------------------------------- 147 (386)
T 1u08_A 107 AITALVR--NGDEVICFDPSYDSYAPAIALSGGIVKRMALQPP------------------------------------- 147 (386)
T ss_dssp HHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTT-------------------------------------
T ss_pred HHHHhCC--CCCEEEEeCCCchhHHHHHHHcCCEEEEeecCcc-------------------------------------
Confidence 9988865 9999999999999988777777776665543100
Q ss_pred hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848 171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ 250 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ 250 (514)
+. ..|.+.+++
T Consensus 148 ------------------------~~---------------------------------------------~~d~~~l~~ 158 (386)
T 1u08_A 148 ------------------------HF---------------------------------------------RVDWQEFAA 158 (386)
T ss_dssp ------------------------TC---------------------------------------------CCCHHHHHH
T ss_pred ------------------------cC---------------------------------------------cCCHHHHHH
Confidence 00 014444544
Q ss_pred HHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEcC
Q psy16848 251 VLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISGT 326 (514)
Q Consensus 251 ~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~S 326 (514)
.+ .++++++++++++||||.++| +++|.++|++||+++|+||+|+.+.+ |....++..... ..+.|++++|
T Consensus 159 ~l----~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~-~~~~~i~~~s 233 (386)
T 1u08_A 159 LL----SERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQ-LRERAVAVSS 233 (386)
T ss_dssp HC----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHH-HHTTEEEEEE
T ss_pred hh----cccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccC-ccCcEEEEec
Confidence 44 346899999999999999998 79999999999999999999995443 322212221110 2367999999
Q ss_pred CcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC
Q psy16848 327 LGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIG 403 (514)
Q Consensus 327 ~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 403 (514)
+||++|.+| ||+++++++++.+....... +.+.+.+.+.++.++++.. ..++++.+++++++++++.+.|++.|
T Consensus 234 ~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g 310 (386)
T 1u08_A 234 FGKTYHMTGWKVGYCVAPAPISAEIRKVHQYL--TFSVNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNALNESR 310 (386)
T ss_dssp HHHHTTCGGGCCEEEECCHHHHHHHHHHHHHH--TSSCCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSSS
T ss_pred chhhcCCcccceEEEEcCHHHHHHHHHHHHhh--ccCCChHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999998657 99999999988887654333 3356777888888888765 45677889999999999999999888
Q ss_pred CccccCCC-cEEEEEeCCC--ccHHHHHHHHHHhCCeEEecccCCCC-CCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848 404 FPVEHTPS-HIIPIKIGNP--ALNTKICDMLLKEKGHYVQPINYPTV-PVGEEKIRLAPTPFHTREMIDKFVTDLLA 476 (514)
Q Consensus 404 ~~~~~~~~-~~~~i~l~~~--~~~~~~~~~Ll~~~GI~v~~~~~~~~-~~~~~~iRl~~~~~~t~e~id~~~~~l~~ 476 (514)
+.+..+.+ .++++.++.. .+..++.+.|++++||.+.++..+.. +.+.+++|++++ .+++++++++++|++
T Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 311 LEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp CEECCCCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred CeecCCCceEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence 87766654 5778888753 35778888886578999998874332 235679999998 489999999998864
No 48
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.97 E-value=1.2e-29 Score=256.08 Aligned_cols=324 Identities=15% Similarity=0.095 Sum_probs=245.8
Q ss_pred CCceeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC--CcEEEEeccccccccc
Q psy16848 16 SNRVTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK--EAGLVFTSCYVANDST 91 (514)
Q Consensus 16 ~g~~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~i~~~sGt~a~~~~ 91 (514)
+|+.++||..+.. ..+|++.+++.+++...+....+ ++. ....++++++++++|. +.+++++||++|+..+
T Consensus 24 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~----y~~-~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~ 98 (360)
T 3hdo_A 24 DIASWIKLNTNENPYPPSPEVVKAILEELGPDGAALRI----YPS-ASSQKLREVAGELYGFDPSWIIMANGSDEVLNNL 98 (360)
T ss_dssp CCTTSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGS----CCC-SSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHH
T ss_pred cccceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhc----CCC-CchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHH
Confidence 4567899976543 34789999999988763211111 111 1236899999999984 5677788888999999
Q ss_pred hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848 92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE 171 (514)
Q Consensus 92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
+.++.+ +||.|+++.+.|.+....++..|.+++.++.++
T Consensus 99 ~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~--------------------------------------- 137 (360)
T 3hdo_A 99 IRAFAA--EGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTG--------------------------------------- 137 (360)
T ss_dssp HHHHCC--TTCEEEEESSSCTHHHHHHHHHTCEEEEECBCT---------------------------------------
T ss_pred HHHHhC--CCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCC---------------------------------------
Confidence 988866 999999999999998888877777776654421
Q ss_pred hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848 172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV 251 (514)
Q Consensus 172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~ 251 (514)
++.. +.
T Consensus 138 ------------------------------------------------------------------------~~~~--~~ 143 (360)
T 3hdo_A 138 ------------------------------------------------------------------------DFRI--AG 143 (360)
T ss_dssp ------------------------------------------------------------------------TSSB--TT
T ss_pred ------------------------------------------------------------------------CCCH--HH
Confidence 0111 11
Q ss_pred HhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848 252 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF 331 (514)
Q Consensus 252 l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l 331 (514)
+.+.. +++++++++++||+|.++|+++|.++|+++|+++|+||+|+.. .+. +...... ..+.+++++|+||.+
T Consensus 144 l~~~~--~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~-~~~---~~~~~~~-~~~~~i~~~s~sK~~ 216 (360)
T 3hdo_A 144 FPERY--EGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEF-AES---NALELVR-RHENVVVTRTLSKSY 216 (360)
T ss_dssp CCSSB--CSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGG-SSC---CCTHHHH-HCSSEEEEEESTTTT
T ss_pred HHhhc--CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhh-CCc---chhHHhc-cCCCEEEEecchHhh
Confidence 11111 2568999999999999999999999999999999999999942 222 1111111 236679999999999
Q ss_pred cCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCcccc
Q psy16848 332 GNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEH 408 (514)
Q Consensus 332 g~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 408 (514)
|.+| ||+++++++++.+......+ +.++..++++.++++. .+++++.+++++++++++.+.|++.++.+..
T Consensus 217 g~~G~r~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 290 (360)
T 3hdo_A 217 SLAGMRIGLAIARPEVIAALDKIRDHY----NLDRLAQAACVAALRD--QAYLSECCRRIRETREWFTTELRSIGYDVIP 290 (360)
T ss_dssp SCTTSCCEEEECCHHHHHHHHHHSCSC----CSCHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHTTCEECC
T ss_pred cCCccceeeEeeCHHHHHHHHHhCCCC----CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCEEcC
Confidence 8656 99999999999988766443 6788899998888884 3467788999999999999999998888777
Q ss_pred CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848 409 TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS 480 (514)
Q Consensus 409 ~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~ 480 (514)
+.+.++++.++. .+..++.+.|. ++||.++++.. +..++++|++++ +++|+++++++|+++.+.
T Consensus 291 ~~~~~~~~~~~~-~~~~~l~~~l~-~~gi~v~~~~~---~~~~~~iRis~~---~~~e~~~l~~al~~~~~~ 354 (360)
T 3hdo_A 291 SQGNYLFATPPD-RDGKRVYDGLY-ARKVLVRHFSD---PLLAHGMRISIG---TREEMEQTLAALKEIGEG 354 (360)
T ss_dssp CSSSEEEEECTT-CCHHHHHHHHH-HTTEECBCCCS---TTTTTSEEEECC---CHHHHHHHHHHHHHHHC-
T ss_pred CCccEEEEECCC-CCHHHHHHHHH-HCCEEEEECCC---CCCCCEEEEEcC---CHHHHHHHHHHHHHHhcc
Confidence 778888887764 45788999985 89999987654 334679999998 899999999999987543
No 49
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.97 E-value=5.3e-30 Score=266.56 Aligned_cols=341 Identities=16% Similarity=0.105 Sum_probs=240.5
Q ss_pred CCceeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc----CC-CcEEEEecc-ccc
Q psy16848 16 SNRVTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH----QK-EAGLVFTSC-YVA 87 (514)
Q Consensus 16 ~g~~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~-~~~i~~~sG-t~a 87 (514)
+|..++|+..++. ..+|.+.+++.+++..++...+. ..|+......++++.+++++ +. +..+++++| +++
T Consensus 67 ~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~~--~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~a 144 (449)
T 3qgu_A 67 PDAKIISLGIGDTTEPLPKYIADAMAKAAAGLATREGY--SGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSKCD 144 (449)
T ss_dssp TTCCCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSCCC--CCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHH
T ss_pred CCCCEEEeeCCCCCCCCCHHHHHHHHHHHHhhccccCC--CCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHHH
Confidence 4678999976532 24789999999999975432211 11222233567788888876 32 234555555 555
Q ss_pred cccchhhccccCCCceEEecCccchhhhhhhhcCCCC----------eeeccCCChHHHHHHHHhcccCCCcEEEeeccc
Q psy16848 88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAP----------KIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 157 (514)
Q Consensus 88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~----------~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~ 157 (514)
+..+ .++.. +||.|+++.+.|.+....++..|.+ ++.++.++.+
T Consensus 145 l~~~-~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~----------------------- 198 (449)
T 3qgu_A 145 IARI-QMMFG--SKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDN----------------------- 198 (449)
T ss_dssp HHHH-HHHHC--SSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGG-----------------------
T ss_pred HHHH-HHHhC--CCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEeccccc-----------------------
Confidence 5554 66765 9999999999999999888888776 4433331100
Q ss_pred cccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCE
Q psy16848 158 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPK 237 (514)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~ 237 (514)
T Consensus 199 -------------------------------------------------------------------------------- 198 (449)
T 3qgu_A 199 -------------------------------------------------------------------------------- 198 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC-CCCCcccc
Q psy16848 238 IIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE-HGAGIGER 313 (514)
Q Consensus 238 ~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~-~~~~~~~~ 313 (514)
++ ...+.+. +++++|++++++||||.+++ +++|+++|++||+++|+||+|+.+..+. ...++...
T Consensus 199 ------~~---~~~~~~~--~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~ 267 (449)
T 3qgu_A 199 ------HF---FPDLSKA--KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEI 267 (449)
T ss_dssp ------TT---CCCGGGC--CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGS
T ss_pred ------CC---cCChhHc--CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhc
Confidence 00 0001111 45789999999999999998 7899999999999999999999544432 22122222
Q ss_pred CCCccCceEEEcCCcccccCCC---eEEEecHHHHH--------HHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHH
Q psy16848 314 DGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFID--------TIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGV 382 (514)
Q Consensus 314 ~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~--------~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 382 (514)
.. ..+.++++.||||++|.+| ||+++++++++ .+....... ..+.+++.+.++.++++....++++
T Consensus 268 ~~-~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~ 344 (449)
T 3qgu_A 268 PG-ADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTC--FNGASNIVQAGGLACLQPEGLKEMN 344 (449)
T ss_dssp TT-GGGTEEEEEECSGGGTCTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHS--CCCCCHHHHHHHHHHTSHHHHHHHH
T ss_pred cC-CCCcEEEEecchhhcCCccceeEEEecCHHHHhhhhhhHHHHHHHHhhcc--cCCCCHHHHHHHHHHHhhcCHHHHH
Confidence 21 2467899999999999667 99999887764 233222221 2257888888888888753335677
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCccccCC-CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCC
Q psy16848 383 ELRAKHQDIVAYLRNELIQIGFPVEHTP-SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF 461 (514)
Q Consensus 383 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~ 461 (514)
+++++++++++++.+.|++.|+.+..+. +.++++.++ ..+..++++.|++++||.+.++..|. +.+++++|+++.
T Consensus 345 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~gI~v~pg~~f~-~~~~~~iRis~~-- 420 (449)
T 3qgu_A 345 AMIKFYKENAQILKTTFTEMGFSVYGGDDAPYIWVGFP-GKPSWDVFAEILERCNIVTTPGSGYG-PAGEGFVRASAF-- 420 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEESSSSSEEEEECT-TSCHHHHHHHHHHHHCEECEEGGGGC-GGGTTEEEEECC--
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeeeCCCCeeEEEEECC-CCCHHHHHHHHHHHCCEEEecchHhC-CCCCCeEEEEec--
Confidence 8899999999999999999988877664 667888887 55678899999755699999988754 345789999975
Q ss_pred CCHHHHHHHHHHHHHHHHHcC
Q psy16848 462 HTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 462 ~t~e~id~~~~~l~~~l~~~~ 482 (514)
.+++++++++++|++++++..
T Consensus 421 ~~~e~i~~~l~~l~~~~~~~~ 441 (449)
T 3qgu_A 421 GSRENILEAVRRFKEAYGKRN 441 (449)
T ss_dssp SCHHHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHHHHhcC
Confidence 489999999999999886643
No 50
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.97 E-value=1.4e-29 Score=262.67 Aligned_cols=347 Identities=17% Similarity=0.111 Sum_probs=245.0
Q ss_pred cCCceeeecccCCC---CC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc--CC-CcEEEEecccc
Q psy16848 15 KSNRVTCRLSSVQY---KV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH--QK-EAGLVFTSCYV 86 (514)
Q Consensus 15 ~~g~~~~d~~~~~~---~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~--~~-~~~i~~~sGt~ 86 (514)
.+|+.++||.++.+ ++ ||++.+++.+++++... + ....+..+...++++++++++ +. +++++++||++
T Consensus 40 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~---~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggse 115 (439)
T 3dxv_A 40 ENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAG-A---TILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSD 115 (439)
T ss_dssp TTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSC-S---CSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHH
T ss_pred CCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccC-c---cccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHH
Confidence 47888999998887 54 79999999999987532 1 123456788999999999998 55 57888999999
Q ss_pred ccccchhhccc-cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccc
Q psy16848 87 ANDSTLFTLGK-MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP 165 (514)
Q Consensus 87 a~~~~l~~l~~-~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
|+..++..+.. .++++.|+.++.+|.....++...+.....+.. .+ .|. ..+
T Consensus 116 a~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~--------~~------~~~---~~~---------- 168 (439)
T 3dxv_A 116 ANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAA--------KA------DGL---ILL---------- 168 (439)
T ss_dssp HHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC---------------------------CE---EEE----------
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhcc--------cc------CCC---CCC----------
Confidence 99999987422 236677777888888877776665543200000 00 000 000
Q ss_pred hhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC--
Q psy16848 166 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN-- 243 (514)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~-- 243 (514)
+..++.+
T Consensus 169 -----------------------------------------------------------------------~~~~~~~~~ 177 (439)
T 3dxv_A 169 -----------------------------------------------------------------------PYPDPYRPY 177 (439)
T ss_dssp -----------------------------------------------------------------------CCCCSSSCB
T ss_pred -----------------------------------------------------------------------cEEcCCCcc
Confidence 0001111
Q ss_pred --------ChhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCc
Q psy16848 244 --------DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGI 310 (514)
Q Consensus 244 --------d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~ 310 (514)
|++.+++.+++...+++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+ ++..|... .
T Consensus 178 ~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~--~ 255 (439)
T 3dxv_A 178 RNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLH--C 255 (439)
T ss_dssp TTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSS--G
T ss_pred cccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh--H
Confidence 4666777775333567899999999999999988 9999999999999999999998 43333211 1
Q ss_pred cccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHH
Q psy16848 311 GERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAK 387 (514)
Q Consensus 311 ~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 387 (514)
.+..+. .+|++ ||||++++ | |++++++++++.+....... +. .+++.++++.++++.+.++. ..++
T Consensus 256 ~~~~~~--~~di~--s~sK~~~~-G~riG~~~~~~~~~~~~~~~~~~~--t~-~~~~~~~aa~aal~~~~~~~---~~~~ 324 (439)
T 3dxv_A 256 FEHEGF--VPDIL--VLGKGLGG-GLPLSAVIAPAEILDCASAFAMQT--LH-GNPISAAAGLAVLETIDRDD---LPAM 324 (439)
T ss_dssp GGGTTC--CCSEE--EECGGGGT-TSCCEEEEEEHHHHTSCSSSSCCT--TT-TCHHHHHHHHHHHHHHHHTT---HHHH
T ss_pred HHhcCC--CCCEE--EEcchhcC-CcceEEEEECHHHHhhhcCCCcCC--Cc-ccHHHHHHHHHHHHHHHhcC---HHHH
Confidence 233333 67888 99999986 6 99999999888776543333 55 78999999999998775433 5666
Q ss_pred HHHHHHHHHHHHHhC----C-CccccCCCcEEEEEe--------CCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEE
Q psy16848 388 HQDIVAYLRNELIQI----G-FPVEHTPSHIIPIKI--------GNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKI 454 (514)
Q Consensus 388 ~~~~~~~l~~~L~~~----g-~~~~~~~~~~~~i~l--------~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~i 454 (514)
++++.+++.+.|.++ . +....+.+.++++.+ ++.....++.+.|+ ++||.+.++.. ..+++
T Consensus 325 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~-----~~~~i 398 (439)
T 3dxv_A 325 AERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAY-QLGLVVYYVGM-----NGNVL 398 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECHHHHHHHHHHHH-HHTEECEEEST-----TSCEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCCHHHHHHHHHHHH-HCCcEEeecCC-----CCCEE
Confidence 777777777666654 2 223345677887776 33344678889996 88999987642 24699
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848 455 RLAPTPFHTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 455 Rl~~~~~~t~e~id~~~~~l~~~l~~~~ 482 (514)
|++++..++++++++++++|+++++++.
T Consensus 399 Ri~~~~~~t~e~i~~~l~~l~~~l~~~~ 426 (439)
T 3dxv_A 399 EFTPPLTITETDIHKALDLLDRAFSELS 426 (439)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9999989999999999999999998764
No 51
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.97 E-value=2.5e-29 Score=254.31 Aligned_cols=323 Identities=14% Similarity=0.135 Sum_probs=245.3
Q ss_pred ceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC---CcEEEEeccccccccch
Q psy16848 18 RVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK---EAGLVFTSCYVANDSTL 92 (514)
Q Consensus 18 ~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~i~~~sGt~a~~~~l 92 (514)
+.++||.++. +..+|++.+++.+++...... + ++. ....++++++++++|. +..++++|||+++..++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~--~----y~~-~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~ 102 (367)
T 3euc_A 30 HGLVKLDAMENPYRLPPALRSELAARLGEVALN--R----YPV-PSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLA 102 (367)
T ss_dssp TTCEECCSSCCCCCCCHHHHHHHHHHHHHHHTT--C----SCC-CCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHH
T ss_pred CCeeEccCCCCCCCCCHHHHHHHHHHhhhhhhh--c----CCC-CcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHH
Confidence 5689997654 334789999999998853211 1 111 2357899999999987 45677777888999998
Q ss_pred hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848 93 FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV 172 (514)
Q Consensus 93 ~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
.++.+ +||+|+++.++|.+....++..|.+++.++.+.
T Consensus 103 ~~~~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~---------------------------------------- 140 (367)
T 3euc_A 103 LAAAR--PGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRA---------------------------------------- 140 (367)
T ss_dssp HHTCC--TTCEEEEEESCSCCSCHHHHTTTCEEEEEECCT----------------------------------------
T ss_pred HHHcC--CCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCC----------------------------------------
Confidence 88866 999999999999988877777777666554310
Q ss_pred hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848 173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL 252 (514)
Q Consensus 173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l 252 (514)
.. ..|.+.+++.+
T Consensus 141 ----------------------~~---------------------------------------------~~d~~~l~~~l 153 (367)
T 3euc_A 141 ----------------------DF---------------------------------------------TLDRGAMLAAM 153 (367)
T ss_dssp ----------------------TS---------------------------------------------CCCHHHHHHHH
T ss_pred ----------------------CC---------------------------------------------CCCHHHHHHHh
Confidence 00 11455566665
Q ss_pred hhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHc--CCEEEEeccccccccCCCCCCccccCCCccCceEEEcCC
Q psy16848 253 ENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQH--GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 327 (514)
Q Consensus 253 ~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~--gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~ 327 (514)
.+. +++++++++++||+|.+++ +++|.++|++| |+++|+||+|+... +.. ...... ..+.+++++|+
T Consensus 154 ~~~---~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~-~~~---~~~~~~-~~~~~i~~~s~ 225 (367)
T 3euc_A 154 AEH---QPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFA-QES---WMSRLT-DFGNLLVMRTV 225 (367)
T ss_dssp HHH---CCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSS-SCC---SGGGGG-TCTTEEEEEEC
T ss_pred hcc---CCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhc-ccc---hHHHHh-hCCCEEEEecc
Confidence 542 4789999999999999987 78888889999 99999999998432 111 111111 23567899999
Q ss_pred cccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-C
Q psy16848 328 GKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-G 403 (514)
Q Consensus 328 sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g 403 (514)
||. +.+| ||+++++++++.+......+ +.++..++++.++++. .+++++.+++++++++++.+.|+++ +
T Consensus 226 sK~-~~~G~r~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g 298 (367)
T 3euc_A 226 SKL-GLAGIRLGYVAGDPQWLEQLDKVRPPY----NVNVLTEATALFALEH--VAVLDEQAAQLRAERSRVAEGMAAHGG 298 (367)
T ss_dssp CCT-TSCSCCEEEEEECHHHHHHHGGGCCSS----CCCHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred hhh-cccccCceeeeeCHHHHHHHHHhCCCC----CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999 6656 99999999999887765443 5788888888888875 3556788999999999999999998 8
Q ss_pred CccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848 404 FPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK 479 (514)
Q Consensus 404 ~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~ 479 (514)
+.+.++.+.++++.++ +..++.+.| .++||.++++..+. +...+++|++++ +++|+++++++|+++++
T Consensus 299 ~~~~~~~~~~~~~~~~---~~~~l~~~l-~~~gi~v~~~~~~~-~~~~~~iRis~~---~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 299 VTVFPSAANFLLARVP---DAAQTFDRL-LARKVLIKNVSKMH-PLLANCLRVTVS---TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp CEECCCSSSEEEEECS---CHHHHHHHH-HTTTEECEECGGGC-GGGTTEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred cEECCCCCeEEEEECC---CHHHHHHHH-HHCCeEEEECCccC-CCCCCEEEEecC---CHHHHHHHHHHHHHHhc
Confidence 8876667778888887 477888888 49999999887643 334679999987 89999999999998753
No 52
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.97 E-value=1.3e-29 Score=263.95 Aligned_cols=345 Identities=14% Similarity=0.081 Sum_probs=245.5
Q ss_pred CCc--eeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccc
Q psy16848 16 SNR--VTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYV 86 (514)
Q Consensus 16 ~g~--~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~ 86 (514)
+|+ .|+||.++ .+++ ||++.+++.+++++..... ......+...+++++++++++ .++++|++||++
T Consensus 71 dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~----~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGse 146 (457)
T 3tfu_A 71 DGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVM----FGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSV 146 (457)
T ss_dssp TTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSCCC----SSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHH
T ss_pred CCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhccCcc----ccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHH
Confidence 788 89999764 5565 8999999999999854321 112245788999999999984 567888999999
Q ss_pred ccccchhhccc-------cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccc
Q psy16848 87 ANDSTLFTLGK-------MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159 (514)
Q Consensus 87 a~~~~l~~l~~-------~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~ 159 (514)
|+..++..+.. .++...|..++.+|.....++...+..... ..
T Consensus 147 A~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~-~~----------------------------- 196 (457)
T 3tfu_A 147 SVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGM-HS----------------------------- 196 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC-----------------------------------
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccc-cc-----------------------------
Confidence 99999987653 122234455666666666555443211100 00
Q ss_pred cCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEE
Q psy16848 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKII 239 (514)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~ 239 (514)
.+.........
T Consensus 197 ---------------------------------------------------------------------~~~~~~~~~~~ 207 (457)
T 3tfu_A 197 ---------------------------------------------------------------------LWTDVLAAQVF 207 (457)
T ss_dssp --------------------------------------------------------------------------CCCCEE
T ss_pred ---------------------------------------------------------------------cccCCCCCceE
Confidence 00000011111
Q ss_pred ec-------CCChhHHHHHHhhccCCCceEEEEec-CCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCC
Q psy16848 240 YR-------HNDVNHLTQVLENMDVKIPKLVAFET-VHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEH 306 (514)
Q Consensus 240 v~-------~~d~~~l~~~l~~~~~~~~~~vv~~~-~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~ 306 (514)
++ .+|.+.+++.+++. .+++++|++++ ++|++|.+.+ +++|+++|++||++||+||+|+ +|..|..
T Consensus 208 ~~~p~~~~~~~d~~~le~~l~~~-~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~ 286 (457)
T 3tfu_A 208 APQVPRDYDPAYSAAFEAQLAQH-AGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGAL 286 (457)
T ss_dssp ECCCCSSCCHHHHHHHHHHHHHH-GGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred ecCCCcccCHHHHHHHHHHHHhC-CCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccch
Confidence 11 13667777777653 24589999999 9999999887 8999999999999999999998 5554432
Q ss_pred CCCccccCCCccCceEEEcCCcccccCC---CeEEEecHHHHHHHHhhc-C--ceEeccCCcHHHHHHHHHHHHHhhhch
Q psy16848 307 GAGIGERDGQLHNMDIISGTLGKAFGNI---GGYIVGTKNFIDTIRSYA-A--GFIFTTSLPPTVLAGAREAIRILSSQE 380 (514)
Q Consensus 307 ~~~~~~~~~~~~~~di~~~S~sK~lg~~---GG~l~~~~~~~~~l~~~~-~--~~~~~~~~~~~~~~a~~~~l~~~~~~~ 380 (514)
. ..+..+. .+|++ ||+|++++. .|++++++++++.+.... . ....+++.+++.++++.++|+.+.++.
T Consensus 287 ~--a~~~~~~--~pdii--t~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~~ 360 (457)
T 3tfu_A 287 F--AADHAGV--SPDIM--CVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQD 360 (457)
T ss_dssp S--THHHHTC--CCSEE--EECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHTSC
T ss_pred h--HhHhcCC--CceEE--EEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhhhH
Confidence 1 1223333 68888 999999762 289999999999885221 1 122355789999999999999876554
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CC---ccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEE
Q psy16848 381 GVELRAKHQDIVAYLRNELIQI-GF---PVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRL 456 (514)
Q Consensus 381 ~~~~~~~~~~~~~~l~~~L~~~-g~---~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl 456 (514)
..++++++.+++++.|+++ .+ ..+.+.+.++.+.+++..+..++.+.|+ ++||.+.+. .+++|+
T Consensus 361 ---~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~l~~~~~~~~~~~~l~-~~Gv~v~~~--------~~~lRi 428 (457)
T 3tfu_A 361 ---WRTRITELAAGLTAGLDTARALPAVTDVRVCGAIGVIECDRPVDLAVATPAAL-DRGVWLRPF--------RNLVYA 428 (457)
T ss_dssp ---HHHHHHHHHHHHHHHHGGGGGSTTEEEEEECSSCEEEEESSCCCHHHHHHHHH-HTTEECCCB--------TTEEEE
T ss_pred ---HHHHHHHHHHHHHHHHHHHhcCCCeeeeecCCeEEEEEECCcccHHHHHHHHH-HCCeEEEec--------CCEEEE
Confidence 6778888888999888876 22 2334567788888876556788999996 889998752 258999
Q ss_pred EeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848 457 APTPFHTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 457 ~~~~~~t~e~id~~~~~l~~~l~~~~ 482 (514)
+++..+|++|+++++++|++++++++
T Consensus 429 ~p~~~~t~eei~~~l~~L~~~l~~~~ 454 (457)
T 3tfu_A 429 MPPYICTPAEITQITSAMVEVARLVG 454 (457)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99989999999999999999998764
No 53
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.97 E-value=1.2e-29 Score=262.03 Aligned_cols=349 Identities=15% Similarity=0.084 Sum_probs=246.2
Q ss_pred CceeeecccCC--CC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC-----CcEEEEeccccc
Q psy16848 17 NRVTCRLSSVQ--YK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK-----EAGLVFTSCYVA 87 (514)
Q Consensus 17 g~~~~d~~~~~--~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~i~~~sGt~a 87 (514)
+..++||.++. +. .+|++.+++.++++..+.....+....|..++.+++.+.+.+.+|. +..+++++|+++
T Consensus 42 ~~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~a 121 (425)
T 1vp4_A 42 DKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQA 121 (425)
T ss_dssp STTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHH
T ss_pred CCCceeCCCCCCCcccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHH
Confidence 45689996543 32 4578999999998763210011111223445555555555444373 345666667888
Q ss_pred cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848 88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK 167 (514)
Q Consensus 88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
+..++.++.. +||.|+++.+.|.+....++..|.+++.++.++ +
T Consensus 122 l~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~--------------------------------- 165 (425)
T 1vp4_A 122 LDLIGKLFLD--DESYCVLDDPAYLGAINAFRQYLANFVVVPLED-D--------------------------------- 165 (425)
T ss_dssp HHHHHHHHCC--TTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET-T---------------------------------
T ss_pred HHHHHHHhCC--CCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCC-C---------------------------------
Confidence 8888888865 999999999999999988888887776554310 0
Q ss_pred HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848 168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH 247 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~ 247 (514)
..|.+.
T Consensus 166 --------------------------------------------------------------------------~~d~~~ 171 (425)
T 1vp4_A 166 --------------------------------------------------------------------------GMDLNV 171 (425)
T ss_dssp --------------------------------------------------------------------------EECHHH
T ss_pred --------------------------------------------------------------------------CCCHHH
Confidence 014455
Q ss_pred HHHHHhhcc----CCCceEE-EEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCcc
Q psy16848 248 LTQVLENMD----VKIPKLV-AFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLH 318 (514)
Q Consensus 248 l~~~l~~~~----~~~~~~v-v~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~ 318 (514)
+++.+++.. .+++++| ++++++||||.++| +++|.++|++||+++|+||+|+.+.. +....++.... ..
T Consensus 172 l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~--~~ 249 (425)
T 1vp4_A 172 LERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIG--GP 249 (425)
T ss_dssp HHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHH--CT
T ss_pred HHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhC--CC
Confidence 555554310 1246787 58999999999998 68899999999999999999995443 22211221111 12
Q ss_pred CceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHHH
Q psy16848 319 NMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRIL-SSQEGVELRAKHQDIVAY 394 (514)
Q Consensus 319 ~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~ 394 (514)
+.+++++|+||+++ +| ||+++++++++.+......+ +.+.+++.+.++.++|+.. ...++++.++++++++++
T Consensus 250 ~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 326 (425)
T 1vp4_A 250 ERVVLLNTFSKVLA-PGLRIGMVAGSKEFIRKIVQAKQSA--DLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTV 326 (425)
T ss_dssp TTEEEEEESTTTTC-GGGCEEEEECCHHHHHHHHHHHHHH--HSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHH
T ss_pred CCEEEEeccccccc-cccceEEEeeCHHHHHHHHHHhhhh--cCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 56899999999999 57 99999999998887655444 3356888888888888753 134567788889999999
Q ss_pred HHHHHHhC-----CCccccCC-CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC-CCCcEEEEEeCCCCCHHHH
Q psy16848 395 LRNELIQI-----GFPVEHTP-SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP-VGEEKIRLAPTPFHTREMI 467 (514)
Q Consensus 395 l~~~L~~~-----g~~~~~~~-~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~-~~~~~iRl~~~~~~t~e~i 467 (514)
+.+.|++. ++.+..+. +.++++.++...+..++.+.|+ ++||.+.++..+... .+.+++|++++. .+++++
T Consensus 327 l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~g~~f~~~~~~~~~iRis~~~-~~~e~i 404 (425)
T 1vp4_A 327 MLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAK-RKKVFYVPGRVFKVYDEPSPSMRLSFCL-PPDEKI 404 (425)
T ss_dssp HHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTCCTTTTHHHHH-HHTEECEEGGGGCTTCCCCSEEEEECSS-SCHHHH
T ss_pred HHHHHHHhCCCCCceEEecCCccEEEEEEcCCCCCHHHHHHHHH-HCCCEEECchhhcCCCCCCCeEEEEeCC-CCHHHH
Confidence 99999875 57665444 5578888875445678889996 679999998864432 246799999985 489999
Q ss_pred HHHHHHHHHHHHHcC
Q psy16848 468 DKFVTDLLAVWKSLD 482 (514)
Q Consensus 468 d~~~~~l~~~l~~~~ 482 (514)
++++++|+++++++.
T Consensus 405 ~~~l~~l~~~l~~~~ 419 (425)
T 1vp4_A 405 VEGIKRLREVVLEYG 419 (425)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987653
No 54
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.97 E-value=3.4e-29 Score=259.23 Aligned_cols=341 Identities=17% Similarity=0.153 Sum_probs=239.3
Q ss_pred cCCceeeecccC----CCC-CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccc
Q psy16848 15 KSNRVTCRLSSV----QYK-VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND 89 (514)
Q Consensus 15 ~~g~~~~d~~~~----~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~ 89 (514)
.+|+.++||.++ .+. .+|++.+++.+++++.... +. . ...+...++++++++++|.+++++++||++|+.
T Consensus 62 ~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~--~~-~--~~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~ 136 (433)
T 1z7d_A 62 VNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTIC--SR-A--FFSVPLGICERYLTNLLGYDKVLMMNTGAEANE 136 (433)
T ss_dssp TTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCC--CT-T--SEEHHHHHHHHHHHHHHTCSEEEEESSHHHHHH
T ss_pred CCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCc--cC-C--cCCHHHHHHHHHHHhhcCCCeEEEeCCHHHHHH
Confidence 367888998652 222 4799999999999875421 11 1 145778999999999999888999999999999
Q ss_pred cchhhccc-------cCCC-ceEEecCccc-hhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc
Q psy16848 90 STLFTLGK-------MIPG-LHYISDAGNH-ASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT 160 (514)
Q Consensus 90 ~~l~~l~~-------~~~g-d~v~~~~~~h-~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 160 (514)
.++..+.. ..+| |.|++.++.| ..+..+++..+......
T Consensus 137 ~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~-------------------------------- 184 (433)
T 1z7d_A 137 TAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTS-------------------------------- 184 (433)
T ss_dssp HHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------------------------------------
T ss_pred HHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccc--------------------------------
Confidence 99887531 1256 7777666554 44444444333211000
Q ss_pred CCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEe
Q psy16848 161 GAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIY 240 (514)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v 240 (514)
.+......+..+
T Consensus 185 --------------------------------------------------------------------~~~p~~~~v~~~ 196 (433)
T 1z7d_A 185 --------------------------------------------------------------------NFGPFAPQFSKV 196 (433)
T ss_dssp ---------------------------------------------------------------------------CEEEE
T ss_pred --------------------------------------------------------------------cCCCCCCCeEEe
Confidence 000001245566
Q ss_pred cCCChhHHHHHHhhccCCCceEEEEecCCCCCcccc----CHHHHHHHHHHcCCEEEEeccccccccCCCCCCcc-ccCC
Q psy16848 241 RHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC----PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIG-ERDG 315 (514)
Q Consensus 241 ~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~----~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~-~~~~ 315 (514)
+.+|.+.+++.++ .+++++|++++++|++|.+. ++++|+++|++||+++|+||+|+ | +++.+..+. +..+
T Consensus 197 ~~~d~~~le~~l~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g-~g~~g~~~~~~~~~ 271 (433)
T 1z7d_A 197 PYDDLEALEEELK---DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-G-LGRTGKLLCVHHYN 271 (433)
T ss_dssp CTTCHHHHHHHHT---STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-T-TTTTSSSSGGGGGT
T ss_pred CCCCHHHHHHHhC---CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCcc-C-CCcCCcchhhHhcC
Confidence 6678888888885 24688999999999999875 38999999999999999999998 3 233332221 2333
Q ss_pred CccCceEEEcCCcccccCC---CeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q psy16848 316 QLHNMDIISGTLGKAFGNI---GGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIV 392 (514)
Q Consensus 316 ~~~~~di~~~S~sK~lg~~---GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 392 (514)
. .+|++ ||+|++++. +|++++++++++.+....... +.+.+++.++++.++++.+.++ +..++++++.
T Consensus 272 ~--~~di~--t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~--t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~ 342 (433)
T 1z7d_A 272 V--KPDVI--LLGKALSGGHYPISAVLANDDIMLVIKPGEHGS--TYGGNPLAASICVEALNVLINE---KLCENAEKLG 342 (433)
T ss_dssp C--CCSEE--EECGGGGTTSSCCEEEEECHHHHTTCCTTCCCC--TTTTCHHHHHHHHHHHHHHHHT---THHHHHHHHH
T ss_pred C--CCCEE--EECccccCCCCCeEEEEECHHHHhhhccccccc--cCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHH
Confidence 3 67888 899999863 499999998887765533333 4578899999999999987544 3677888889
Q ss_pred HHHHHHHHhC--CCcc---ccCCCcEEEEEeCCC-ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHH
Q psy16848 393 AYLRNELIQI--GFPV---EHTPSHIIPIKIGNP-ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREM 466 (514)
Q Consensus 393 ~~l~~~L~~~--g~~~---~~~~~~~~~i~l~~~-~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~ 466 (514)
+++.+.|+++ +++. ..+.+.++++.++.. .+..++.+.|+ ++||.+.++ +.+++|++++..+|++|
T Consensus 343 ~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~-~~Gv~v~~~-------~~~~iRi~~~~~~t~e~ 414 (433)
T 1z7d_A 343 GPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLK-ENGLITRDV-------HDKTIRLTPPLCITKEQ 414 (433)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTTCCHHHHHHHHH-HTTEECCEE-------TTTEEEECCCTTCCHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccChhHHHHHHHHHH-HCCeEEecC-------CCCEEEEECCcCCCHHH
Confidence 9999888875 5543 234677888888753 35678999996 899999764 25689999998899999
Q ss_pred HHHHHHHHHHHHHHcC
Q psy16848 467 IDKFVTDLLAVWKSLD 482 (514)
Q Consensus 467 id~~~~~l~~~l~~~~ 482 (514)
+++++++|+++++++.
T Consensus 415 i~~~l~~l~~~l~~~~ 430 (433)
T 1z7d_A 415 LDECTEIIVKTVKFFD 430 (433)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987753
No 55
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.97 E-value=6.4e-29 Score=254.17 Aligned_cols=345 Identities=13% Similarity=0.060 Sum_probs=245.0
Q ss_pred eeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccccccccch
Q psy16848 19 VTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVANDSTL 92 (514)
Q Consensus 19 ~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a~~~~l 92 (514)
.++||..++. ..+|.+.+++.++++.....++ .+..++.+++.+.+.+.+| .+..+++++|++|+..++
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~-----~~~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~ 106 (399)
T 1c7n_A 32 EVVPLSVADMEFKNPPELIEGLKKYLDETVLGYT-----GPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAV 106 (399)
T ss_dssp TCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSB-----CCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHH
T ss_pred CceeeeecCCCCCCCHHHHHHHHHHHhcCCCCCC-----CCcHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHH
Confidence 5677754432 2378999999999875211111 1134455555555555455 345666677788999999
Q ss_pred hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848 93 FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV 172 (514)
Q Consensus 93 ~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
.++.. +||.|+++.+.|.+...+++..|.+++.++..+. +|.|
T Consensus 107 ~~l~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~--------------------~g~~--------------- 149 (399)
T 1c7n_A 107 REFTK--PGDGVIIITPVYYPFFMAIKNQERKIIECELLEK--------------------DGYY--------------- 149 (399)
T ss_dssp HHHCC--TTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEE--------------------TTEE---------------
T ss_pred HHhcC--CCCEEEEcCCCcHhHHHHHHHcCCEEEecccccC--------------------CCCE---------------
Confidence 88865 9999999999999999888888877765543100 0000
Q ss_pred hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848 173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL 252 (514)
Q Consensus 173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l 252 (514)
..|.+.+++.+
T Consensus 150 ---------------------------------------------------------------------~~d~~~l~~~l 160 (399)
T 1c7n_A 150 ---------------------------------------------------------------------TIDFQKLEKLS 160 (399)
T ss_dssp ---------------------------------------------------------------------ECCHHHHHHHH
T ss_pred ---------------------------------------------------------------------EEcHHHHHHHh
Confidence 01455666665
Q ss_pred hhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEcCCc
Q psy16848 253 ENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISGTLG 328 (514)
Q Consensus 253 ~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~S~s 328 (514)
++ +++++|++++++||||.++| +++|.++|++||+++|+||+|+.+.. +....++........+.+++++|+|
T Consensus 161 ~~---~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~s 237 (399)
T 1c7n_A 161 KD---KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPS 237 (399)
T ss_dssp TC---TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSH
T ss_pred cc---CCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeCh
Confidence 42 35789999999999999999 99999999999999999999995433 2222122211100035679999999
Q ss_pred ccccCCC---eEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh-C-
Q psy16848 329 KAFGNIG---GYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ-I- 402 (514)
Q Consensus 329 K~lg~~G---G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~- 402 (514)
|++|.+| |+++++ +++++.+......+.+ .+.+++.+.++.++++.. .+++++.+++++++++++.+.|++ +
T Consensus 238 K~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~ 315 (399)
T 1c7n_A 238 KTFNIAGMGMSNIIIKNPDIRERFTKSRDATSG-MPFTTLGYKACEICYKEC-GKWLDGCIKVIDKNQRIVKDFFEVNHP 315 (399)
T ss_dssp HHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTC-CCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hhccccchheEEEEECCHHHHHHHHHHHhhccc-CCCCHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9998656 999986 6788888765544311 146788888888888753 456778889999999999999998 6
Q ss_pred CCccccCCCcEE-EEEeCCC-ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848 403 GFPVEHTPSHII-PIKIGNP-ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS 480 (514)
Q Consensus 403 g~~~~~~~~~~~-~i~l~~~-~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~ 480 (514)
++.+..+.++++ ++.++.. .+..++.+.|++++||.+.++..+. +.+.+++|++++. +++++++++++|++++++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~-~~~~~~iRis~~~--~~~~l~~~l~~l~~~l~~ 392 (399)
T 1c7n_A 316 EIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFG-DGGIGFERINLAA--PSSVIQESLERLNKALKD 392 (399)
T ss_dssp TSBCCCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGC-GGGTTEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred CCeEecCCceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccC-CCCCCeEEEEecc--CHHHHHHHHHHHHHHHHH
Confidence 787766666644 5787642 3577899998547899999987643 2346799999984 488999999999999987
Q ss_pred cC
Q psy16848 481 LD 482 (514)
Q Consensus 481 ~~ 482 (514)
+.
T Consensus 393 ~~ 394 (399)
T 1c7n_A 393 LK 394 (399)
T ss_dssp HC
T ss_pred HH
Confidence 64
No 56
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.97 E-value=8.5e-30 Score=260.64 Aligned_cols=334 Identities=17% Similarity=0.168 Sum_probs=239.0
Q ss_pred CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEecccccccc
Q psy16848 16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDS 90 (514)
Q Consensus 16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~ 90 (514)
+|+.++|+.++ ++++ +|++.+++.++++.++... .. ...+..+++++++++++|.+++++++||++|+..
T Consensus 38 ~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~--~~---~~~~~~~~l~~~la~~~g~~~v~~~~gg~~a~~~ 112 (397)
T 2ord_A 38 KGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCS--NL---FWNRPQMELAELLSKNTFGGKVFFANTGTEANEA 112 (397)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCC--TT---SEEHHHHHHHHHHHHTTTSCEEEEESSHHHHHHH
T ss_pred CCCEEEECCccccccccCCCCHHHHHHHHHHHHhcccCc--cc---cCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHH
Confidence 67788999765 6775 6899999999998854421 11 1357889999999999998888999999999999
Q ss_pred chhhcccc-----CCCceEE-ecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCcc
Q psy16848 91 TLFTLGKM-----IPGLHYI-SDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC 164 (514)
Q Consensus 91 ~l~~l~~~-----~~gd~v~-~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
++.++... ..++.|+ .++.+|.....+++..|.+.+.... .|
T Consensus 113 al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~----------------~p---------------- 160 (397)
T 2ord_A 113 AIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPF----------------EP---------------- 160 (397)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGG----------------CS----------------
T ss_pred HHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhcccc----------------CC----------------
Confidence 88876421 1234455 5555556666566655543110000 00
Q ss_pred chhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCC
Q psy16848 165 PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHND 244 (514)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d 244 (514)
.-..++.++.+|
T Consensus 161 --------------------------------------------------------------------~~~~~~~~~~~d 172 (397)
T 2ord_A 161 --------------------------------------------------------------------LVPGFEYFEFNN 172 (397)
T ss_dssp --------------------------------------------------------------------CCTTEEEECTTC
T ss_pred --------------------------------------------------------------------CCCCeeEecCCC
Confidence 001244555556
Q ss_pred hhHHHHHHhhccCCCceEEEEecCCCCCcc-ccC---HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCcc-ccCCCcc
Q psy16848 245 VNHLTQVLENMDVKIPKLVAFETVHSMTGA-ICP---LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIG-ERDGQLH 318 (514)
Q Consensus 245 ~~~l~~~l~~~~~~~~~~vv~~~~~nptG~-~~~---l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~-~~~~~~~ 318 (514)
.+.+++.++ +++++|++++++||||. +++ +++|.++|++||+++|+||+|+ ++..|. .+. ...+.
T Consensus 173 ~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~~~~~~-- 243 (397)
T 2ord_A 173 VEDLRRKMS----EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGK---LFAYQKYGV-- 243 (397)
T ss_dssp HHHHHHHCC----TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSHHHHHTC--
T ss_pred HHHHHHHhh----cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCcc---chhhhhhCC--
Confidence 776666664 46899999999999999 665 8999999999999999999998 332221 111 11221
Q ss_pred CceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy16848 319 NMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYL 395 (514)
Q Consensus 319 ~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 395 (514)
.+|++ ||||++++ | |+++++++++ .+....... +.+.+++.++++.++++.+.. ++.+++++++++++
T Consensus 244 ~~d~~--s~sK~~~~-G~r~G~~~~~~~~~-~l~~~~~~~--~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l 314 (397)
T 2ord_A 244 VPDVL--TTAKGLGG-GVPIGAVIVNERAN-VLEPGDHGT--TFGGNPLACRAGVTVIKELTK---EGFLEEVEEKGNYL 314 (397)
T ss_dssp CCSEE--EECGGGGT-TSCCEEEEECSTTC-CCCTTSSCC--SSTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHH
T ss_pred CCCee--eeccccCC-CcCeEEEEEchHhc-ccCCCCcCC--CCCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHH
Confidence 46777 88999985 5 8998888765 443322222 446788999999999987754 35788889999999
Q ss_pred HHHHHhC--CCcc---ccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHH
Q psy16848 396 RNELIQI--GFPV---EHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKF 470 (514)
Q Consensus 396 ~~~L~~~--g~~~---~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~ 470 (514)
.+.|++. +++. ..+.+.++++.+++..+..++.+.|+ ++||.+.++. .+++|++++...++++++++
T Consensus 315 ~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~~~-------~~~iRis~~~~~~~e~i~~~ 386 (397)
T 2ord_A 315 MKKLQEMKEEYDVVADVRGMGLMIGIQFREEVSNREVATKCF-ENKLLVVPAG-------NNTIRFLPPLTVEYGEIDLA 386 (397)
T ss_dssp HHHHHHHHHHCTTEEEEEEETTEEEEEECTTSCHHHHHHHHH-HTTEECEEET-------TTEEEECCCTTCCHHHHHHH
T ss_pred HHHHHHHHHhCCceEEEEEEeEEEEEEECChHHHHHHHHHHH-HCCCEEccCC-------CCEEEEECCcCCCHHHHHHH
Confidence 9988875 3443 23456788888876555788999996 7999998752 46899999888999999999
Q ss_pred HHHHHHHHHH
Q psy16848 471 VTDLLAVWKS 480 (514)
Q Consensus 471 ~~~l~~~l~~ 480 (514)
+++|++++++
T Consensus 387 ~~~l~~~l~~ 396 (397)
T 2ord_A 387 VETLKKVLQG 396 (397)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 57
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.97 E-value=1.8e-29 Score=256.80 Aligned_cols=334 Identities=18% Similarity=0.129 Sum_probs=243.2
Q ss_pred eeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccchhh
Q psy16848 19 VTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFT 94 (514)
Q Consensus 19 ~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~ 94 (514)
.++||..+.. ..+|.+.+++.++++. ... ++......++++.++++++.+ .+++++||++|+..++.+
T Consensus 26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~-------y~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~ 97 (381)
T 1v2d_A 26 GAVNLGQGFPSNPPPPFLLEAVRRALGR-QDQ-------YAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQS 97 (381)
T ss_dssp TCEECCCCSCSSCCCHHHHHHHHHHTTT-SCS-------CCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHH
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHHH-hcC-------CCCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHH
Confidence 4788865443 3478999999988765 211 122223578899999998864 577778889999999988
Q ss_pred ccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCC-hHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhh
Q psy16848 95 LGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHND-VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVS 173 (514)
Q Consensus 95 l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (514)
+.. +||.|+++.+.|.+....++..|.+++.++.+. .+ .+
T Consensus 98 ~~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~---------------------~~---------------- 138 (381)
T 1v2d_A 98 LVG--PGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPE---------------------GF---------------- 138 (381)
T ss_dssp HCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETT---------------------EE----------------
T ss_pred hCC--CCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCc---------------------cC----------------
Confidence 865 999999999999998877777777665443310 00 00
Q ss_pred hhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHh
Q psy16848 174 HQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLE 253 (514)
Q Consensus 174 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~ 253 (514)
..|.+.++
T Consensus 139 --------------------------------------------------------------------~~d~~~l~---- 146 (381)
T 1v2d_A 139 --------------------------------------------------------------------RLDLSALE---- 146 (381)
T ss_dssp --------------------------------------------------------------------ECCHHHHH----
T ss_pred --------------------------------------------------------------------CcCHHHHH----
Confidence 01333333
Q ss_pred hccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccc
Q psy16848 254 NMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKA 330 (514)
Q Consensus 254 ~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~ 330 (514)
+..+++++++++++++||||.++| +++|.++|++||+++|+||+|+.+..|..+.++... ..+.|++++|+||+
T Consensus 147 ~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~---~~~~~~~~~s~sK~ 223 (381)
T 1v2d_A 147 KALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREF---APERTFTVGSAGKR 223 (381)
T ss_dssp TTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH---CTTTEEEEEEHHHH
T ss_pred HhcCcCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHh---cCCCEEEEeechhh
Confidence 333456899999999999999998 899999999999999999999955444433233222 23689999999999
Q ss_pred ccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhh-hchHHHHHHHHHHHHHHHHHHHHhCCCcc
Q psy16848 331 FGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS-SQEGVELRAKHQDIVAYLRNELIQIGFPV 406 (514)
Q Consensus 331 lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 406 (514)
+|.+| |++++++++++.+....... +.+.++..+.++.++++... .+++++++++++++++++.+.|++.|+.+
T Consensus 224 ~~~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 301 (381)
T 1v2d_A 224 LEATGYRVGWIVGPKEFMPRLAGMRQWT--SFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRV 301 (381)
T ss_dssp TTCGGGCCEEEECCTTTHHHHHHHHHHH--TSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred cCCcccceEEEEeCHHHHHHHHHHHhhc--ccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHCCCEe
Confidence 98656 99999999888887654332 33567788888888887542 45678899999999999999999988887
Q ss_pred ccCC-CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCC-CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy16848 407 EHTP-SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTV-PVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL 483 (514)
Q Consensus 407 ~~~~-~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~-~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~~ 483 (514)
..+. +.++++.++.. + +.+.+ +++||.+.++..+.. +.+.+++|++++. +++++++++++|++++++.+.
T Consensus 302 ~~~~~~~~~~~~~~~~-~---~~~~l-~~~gi~v~~g~~~~~~~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~r~ 373 (381)
T 1v2d_A 302 YVPEGTYFLMAELPGW-D---AFRLV-EEARVALIPASAFYLEDPPKDLFRFAFCK--TEEELHLALERLGRVVNSPRE 373 (381)
T ss_dssp ECCSBSSEEEEECTTC-C---HHHHH-HHTCEECEEGGGGCSSSCCTTEEEEECCS--CHHHHHHHHHHHHHHC-----
T ss_pred cCCCcceEEEEecChH-h---HHHHH-HhCCEEEecchHhCCCCCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhhccc
Confidence 7665 44677777654 2 55555 599999999876543 2346799999985 899999999999999877654
No 58
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.97 E-value=7.9e-29 Score=251.96 Aligned_cols=331 Identities=15% Similarity=0.155 Sum_probs=246.8
Q ss_pred ceeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC--c-EEEEeccccccccchhh
Q psy16848 18 RVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--A-GLVFTSCYVANDSTLFT 94 (514)
Q Consensus 18 ~~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~-~i~~~sGt~a~~~~l~~ 94 (514)
..+.|..+... .+|++.+++.+++.. .+ .....+..+++++++++++|.+ + +++++|||+|+..++.+
T Consensus 20 ~~~l~~~~~~~-~~~~v~~a~~~~~~~---~~-----~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~ 90 (386)
T 2dr1_A 20 KYKLFTAGPVA-CFPEVLEIMKVQMFS---HR-----SKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRN 90 (386)
T ss_dssp CSEECCSSSCC-CCHHHHHHTTSCCCC---TT-----SHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHH
T ss_pred cceeecCCCcC-CcHHHHHHHhccccc---cc-----CHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHH
Confidence 45666644332 256676666554321 11 1112578899999999999976 4 45667888999999988
Q ss_pred ccccCCCceEEecCccchh--hhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848 95 LGKMIPGLHYISDAGNHAS--MIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV 172 (514)
Q Consensus 95 l~~~~~gd~v~~~~~~h~~--~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
+.. +||.|+++.+.|.+ ....++..|.+++.++.+. +
T Consensus 91 l~~--~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~-------------------------------------- 129 (386)
T 2dr1_A 91 GVS--KGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEP-G-------------------------------------- 129 (386)
T ss_dssp HSC--TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-T--------------------------------------
T ss_pred hhc--CCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCC-C--------------------------------------
Confidence 865 99999999999988 6666666666665544310 0
Q ss_pred hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848 173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL 252 (514)
Q Consensus 173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l 252 (514)
...|.+.+++.+
T Consensus 130 --------------------------------------------------------------------~~~d~~~l~~~l 141 (386)
T 2dr1_A 130 --------------------------------------------------------------------KAVKPEDLDDAL 141 (386)
T ss_dssp --------------------------------------------------------------------CCCCHHHHHHHH
T ss_pred --------------------------------------------------------------------CCCCHHHHHHHH
Confidence 012556666666
Q ss_pred hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc
Q psy16848 253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG 332 (514)
Q Consensus 253 ~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg 332 (514)
++ ++++++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+... + +.. ..++|++++|+||+++
T Consensus 142 ~~--~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~-----~-~~~--~~~~di~~~s~sK~~~ 211 (386)
T 2dr1_A 142 RK--NPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGAD-----I-KFD--KWGLDVVFSSSQKAFG 211 (386)
T ss_dssp HH--CTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBC-----C-CTT--TTTCSEEEEETTSTTC
T ss_pred hc--CCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCcc-----c-ccc--ccCCcEEEEecccccc
Confidence 53 245789999999999999999999999999999999999999966531 1 111 2367999999999998
Q ss_pred CC-C-eEEEecHHHHHHHHh----------------h--cCceEeccCCcHHHHHHHHHHHHHhhhc-hHHHHHHHHHHH
Q psy16848 333 NI-G-GYIVGTKNFIDTIRS----------------Y--AAGFIFTTSLPPTVLAGAREAIRILSSQ-EGVELRAKHQDI 391 (514)
Q Consensus 333 ~~-G-G~l~~~~~~~~~l~~----------------~--~~~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~ 391 (514)
++ | |++++++++++.+.. . .... ..+.+...++++.++++.+.+. ++++++++++++
T Consensus 212 ~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~ 289 (386)
T 2dr1_A 212 VPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKEST--PSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKR 289 (386)
T ss_dssp CCSSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSC--SSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCC--CCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 64 5 999999998887632 1 1111 3357788888888899877555 578899999999
Q ss_pred HHHHHHHHHhCCCccccC----CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHH
Q psy16848 392 VAYLRNELIQIGFPVEHT----PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI 467 (514)
Q Consensus 392 ~~~l~~~L~~~g~~~~~~----~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~i 467 (514)
++++.+.|++.|+++..+ .+.++++.++...+..++.+.|. ++||.+.++..+. ..+++|++++..++++++
T Consensus 290 ~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~~~~---~~~~iRi~~~~~~~~~~i 365 (386)
T 2dr1_A 290 AKMVREGVREIGLDILAEPGHESPTITAVLTPPGIKGDEVYEAMR-KRGFELAKGYGSV---KEKTFRIGHMGYMKFEDI 365 (386)
T ss_dssp HHHHHHHHHHTTCCBSSCTTCBCSSEEEEECCTTCCHHHHHHHHH-HTTEECEECCGGG---TTTEEEEECCSSCCHHHH
T ss_pred HHHHHHHHHHcCCeeCcCccccCCceEEEEcCCCCCHHHHHHHHH-HCCeEEecCcccc---CCCEEEEECCCCCCHHHH
Confidence 999999999988877655 35688888875556788999996 7799999877432 356999999988999999
Q ss_pred HHHHHHHHHHHHHcC
Q psy16848 468 DKFVTDLLAVWKSLD 482 (514)
Q Consensus 468 d~~~~~l~~~l~~~~ 482 (514)
++++++|++++++++
T Consensus 366 ~~~~~~l~~~~~~~~ 380 (386)
T 2dr1_A 366 QEMLDNLREVINELK 380 (386)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999988764
No 59
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.97 E-value=6.5e-29 Score=250.44 Aligned_cols=324 Identities=12% Similarity=0.073 Sum_probs=240.4
Q ss_pred CCceeeecccC-CCC-CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC--CcEEEEeccccccccc
Q psy16848 16 SNRVTCRLSSV-QYK-VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK--EAGLVFTSCYVANDST 91 (514)
Q Consensus 16 ~g~~~~d~~~~-~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~i~~~sGt~a~~~~ 91 (514)
+|+.++||.++ ..+ .+|++.+++.++++... .++ .+...+++++++++++. +..++++|||+|+..+
T Consensus 24 ~~~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~-~y~--------~~~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~~ 94 (361)
T 3ftb_A 24 KGRELLDYSSNINPLGIPKSFLNNIDEGIKNLG-VYP--------DVNYRRLNKSIENYLKLKDIGIVLGNGASEIIELS 94 (361)
T ss_dssp ----CEETTCCCCTTCSCHHHHTTHHHHHHGGG-SCC--------CTTCHHHHHHHHHHHTCCSCEEEEESSHHHHHHHH
T ss_pred CCCCEEEecCCCCCCCCCHHHHHHHHHHHHHhc-CCC--------CccHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHH
Confidence 67789999765 334 47899999999988631 111 12347899999999884 3456667778888888
Q ss_pred hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848 92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE 171 (514)
Q Consensus 92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
+.++ |+|+++.++|.+....++..|.+++.++.....
T Consensus 95 ~~~~------d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------------------------------------- 131 (361)
T 3ftb_A 95 ISLF------EKILIIVPSYAEYEINAKKHGVSVVFSYLDENM------------------------------------- 131 (361)
T ss_dssp HTTC------SEEEEEESCCTHHHHHHHHTTCEEEEEECCTTS-------------------------------------
T ss_pred HHHc------CcEEEecCChHHHHHHHHHcCCeEEEeecCccc-------------------------------------
Confidence 7655 899999999999887777777766654431000
Q ss_pred hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848 172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV 251 (514)
Q Consensus 172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~ 251 (514)
.-+.+.+++.
T Consensus 132 ----------------------------------------------------------------------~~~~~~l~~~ 141 (361)
T 3ftb_A 132 ----------------------------------------------------------------------CIDYEDIISK 141 (361)
T ss_dssp ----------------------------------------------------------------------CCCHHHHHHH
T ss_pred ----------------------------------------------------------------------CCCHHHHHHh
Confidence 0023344444
Q ss_pred HhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc
Q psy16848 252 LENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG 328 (514)
Q Consensus 252 l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s 328 (514)
++ + ++++++++|+||+|.++| +++|.++|++||+++|+||+|+.+..+ ...+...... ..+.+++++|+|
T Consensus 142 l~----~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~-~~~~~i~~~s~s 214 (361)
T 3ftb_A 142 ID----D-VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-PSSSFVGEIK-NYSCLFIIRAMT 214 (361)
T ss_dssp TT----T-CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-TTSSSGGGTT-TCSSEEEEEESS
T ss_pred cc----C-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-cccchhHhcc-cCCCEEEEeeCh
Confidence 43 3 789999999999999998 688888899999999999999955443 2222222222 235678899999
Q ss_pred ccccCCC---eEEE-ecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-C
Q psy16848 329 KAFGNIG---GYIV-GTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-G 403 (514)
Q Consensus 329 K~lg~~G---G~l~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g 403 (514)
|.+|.+| |+++ .++++.+.+......+ +.++..++++.++++. .+++++.+++++++++++.+.|+++ +
T Consensus 215 K~~~~~G~r~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~ 288 (361)
T 3ftb_A 215 KFFAMPGIRFGYGITNNKEIAAKIKAKQNPW----NINCFAEMAAINCLKD--TNYIEESLLWIKKERKRFIEELNKIGF 288 (361)
T ss_dssp STTSCGGGCCEEEEESCHHHHHHHHTTSCTT----CSCHHHHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred hhcCCCCcceeEEEeCCHHHHHHHHhhCCCC----CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9998656 8988 8899999988765443 6788888888888873 4567788999999999999999998 7
Q ss_pred Cc-cccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848 404 FP-VEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS 480 (514)
Q Consensus 404 ~~-~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~ 480 (514)
+. +..+.++++++.++. .+..++.+.|. ++||.+.++..+. ..+.+++|++++ +.++++++++.++++.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~-~~gi~v~~g~~~~-~~~~~~iRis~~---~~~~~~~l~~~l~~~~~~ 360 (361)
T 3ftb_A 289 IKRVFSPHANFVLCRLEN-ISGEKLYDSLL-KEDIVIRRCCNFI-GLDDSFVRFAIK---DEKKNTKFLRALKGVENN 360 (361)
T ss_dssp EEEEECCSSSEEEEEESS-SCHHHHHHHHH-TTTEECEECTTST-TCCTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred CceecCCCCeEEEEEcCC-CCHHHHHHHHH-HCCeEEeeCccCC-CCCCCEEEEEcC---CHHHHHHHHHHHHHHHhc
Confidence 77 667788888888876 45788999996 7899999988643 344689999998 889999999999987654
No 60
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.97 E-value=1.4e-29 Score=261.18 Aligned_cols=337 Identities=18% Similarity=0.133 Sum_probs=239.8
Q ss_pred cCCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccc
Q psy16848 15 KSNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND 89 (514)
Q Consensus 15 ~~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~ 89 (514)
.+|+.++||.++ .+++ +|++.+++.++++++.... .. ...+..+++++++++++|.+++++++||++|+.
T Consensus 54 ~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~--~~---~~~~~~~~l~~~la~~~g~~~v~~~~ggteA~~ 128 (420)
T 2pb2_A 54 QQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTS--NV---FTNEPALRLGRKLIDATFAERVLFMNSGTEANE 128 (420)
T ss_dssp TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCC--TT---SCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHH
T ss_pred CCCCEEEEccccccccccCCCCHHHHHHHHHHHHhccccc--Cc---cCCHHHHHHHHHHHhhCCCCeEEEeCCHHHHHH
Confidence 367888999765 5665 7999999999998754321 11 245788999999999999888999999999999
Q ss_pred cchhhcccc-----CCC-ceEEecC-ccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCC
Q psy16848 90 STLFTLGKM-----IPG-LHYISDA-GNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGA 162 (514)
Q Consensus 90 ~~l~~l~~~-----~~g-d~v~~~~-~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
.++.++... .+| +.|++.+ .+|.....+++..+.+.....
T Consensus 129 ~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~--------------------------------- 175 (420)
T 2pb2_A 129 TAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDG--------------------------------- 175 (420)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTT---------------------------------
T ss_pred HHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCcccccc---------------------------------
Confidence 999876421 034 3666554 455555555555443311000
Q ss_pred ccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC
Q psy16848 163 ICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH 242 (514)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~ 242 (514)
+......+..++.
T Consensus 176 -------------------------------------------------------------------~~p~~~~~~~~~~ 188 (420)
T 2pb2_A 176 -------------------------------------------------------------------FGPKPADIIHVPF 188 (420)
T ss_dssp -------------------------------------------------------------------SSSCCSCEEEECT
T ss_pred -------------------------------------------------------------------CCCCCCCeEEecC
Confidence 0000112445555
Q ss_pred CChhHHHHHHhhccCCCceEEEEecCCCCCcc-ccC---HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCc-cccCCC
Q psy16848 243 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGA-ICP---LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGI-GERDGQ 316 (514)
Q Consensus 243 ~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~-~~~---l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~-~~~~~~ 316 (514)
+|.+.+++.+. +++++|++++++|++|. +++ +++|+++|++||+++|+||+|+ ++.. +..+ .+..+.
T Consensus 189 ~d~~~le~~i~----~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~---g~~~~~~~~~~ 261 (420)
T 2pb2_A 189 NDLHAVKAVMD----DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRT---GDLFAYMHYGV 261 (420)
T ss_dssp TCHHHHHHHCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTT---SSSSHHHHHTC
T ss_pred CCHHHHHHHhc----cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccC---CcHHHHHhcCC
Confidence 67777776664 46899999999998885 344 8999999999999999999997 3333 2222 122332
Q ss_pred ccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q psy16848 317 LHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVA 393 (514)
Q Consensus 317 ~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 393 (514)
.+|++ ||||++++ | |++++++++++.+....... +.+.+++.++++.++|+.+.+ ++..++++++++
T Consensus 262 --~~dii--t~sK~l~~-G~~iG~~~~~~~l~~~l~~~~~~~--t~~~~~~~~aa~~a~L~~~~~---~~~~~~~~~~~~ 331 (420)
T 2pb2_A 262 --TPDIL--TSAKALGG-GFPVSAMLTTQEIASAFHVGSHGS--TYGGNPLACAVAGAAFDIINT---PEVLQGIHTKRQ 331 (420)
T ss_dssp --CCSEE--EECGGGGT-TSCCEEEEECHHHHTTCC----CC--EECCCHHHHHHHHHHHHHHSS---HHHHHHHHHHHH
T ss_pred --CCCeE--EecccccC-CCceEEEEEhHHHHHhhcCCCcCc--ccCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHH
Confidence 57888 78999985 5 99999988776665432233 347789999999999998754 357888889999
Q ss_pred HHHHHHHhC--CCcc---ccCCCcEEEEEeCCCc--cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHH
Q psy16848 394 YLRNELIQI--GFPV---EHTPSHIIPIKIGNPA--LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREM 466 (514)
Q Consensus 394 ~l~~~L~~~--g~~~---~~~~~~~~~i~l~~~~--~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~ 466 (514)
++.+.|+++ +++. ..+.+.++++.++... +..++.+.|+ ++||.+.++. .+++|++++..++++|
T Consensus 332 ~l~~~L~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~l~-~~Gi~v~~~~-------~~~iRl~~~~~~t~ee 403 (420)
T 2pb2_A 332 QFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYKGRARDFLYAGA-EAGVMVLNAG-------ADVMRFAPSLVVEEAD 403 (420)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEETTEEEEEECGGGTTCHHHHHHHHH-HTTEECEESS-------TTEEEECCCTTCCHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEecceEEEEEECCCchHHHHHHHHHHH-HCCCEEEeCC-------CCEEEEECCCCCCHHH
Confidence 999888775 3332 3456778888886532 4678999996 8999998642 4689999988899999
Q ss_pred HHHHHHHHHHHHHHc
Q psy16848 467 IDKFVTDLLAVWKSL 481 (514)
Q Consensus 467 id~~~~~l~~~l~~~ 481 (514)
+++++++|+++++++
T Consensus 404 i~~~~~~l~~~l~~~ 418 (420)
T 2pb2_A 404 IHEGMQRFAQAVGKV 418 (420)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988764
No 61
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.97 E-value=6.6e-29 Score=259.87 Aligned_cols=347 Identities=17% Similarity=0.144 Sum_probs=245.4
Q ss_pred cCCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc--CCCcEEEEeccccc
Q psy16848 15 KSNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH--QKEAGLVFTSCYVA 87 (514)
Q Consensus 15 ~~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~--~~~~~i~~~sGt~a 87 (514)
.+|+.|+||.++ ..++ ||+|++++.+++++....+. . .+..+...++++++++++ +.++++|++||++|
T Consensus 51 ~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~---~-~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA 126 (476)
T 3i5t_A 51 EDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASP---W-YMATSPAARLAEKIATLTPGDLNRIFFTTGGSTA 126 (476)
T ss_dssp TTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCT---T-TCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHH
T ss_pred CCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccc---C-ccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHH
Confidence 377888998665 3354 79999999999998544222 1 345688999999999998 46778999999999
Q ss_pred cccchhhcccc------CCC-ceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc
Q psy16848 88 NDSTLFTLGKM------IPG-LHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT 160 (514)
Q Consensus 88 ~~~~l~~l~~~------~~g-d~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 160 (514)
+..++..+... .++ ..|+.++.+|.....+....+.....-.. .+.
T Consensus 127 ~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~----------------~~~----------- 179 (476)
T 3i5t_A 127 VDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNF----------------DIA----------- 179 (476)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTS----------------CCC-----------
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhcccc----------------CCC-----------
Confidence 99999887531 123 34455666666666555544432210000 000
Q ss_pred CCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEe
Q psy16848 161 GAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIY 240 (514)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v 240 (514)
..+...+.+
T Consensus 180 -----------------------------------------------------------------------~~~~~~~~~ 188 (476)
T 3i5t_A 180 -----------------------------------------------------------------------QDRISFLSS 188 (476)
T ss_dssp -----------------------------------------------------------------------CTTEEEECC
T ss_pred -----------------------------------------------------------------------CCCcEEeCC
Confidence 000011111
Q ss_pred cC-----C-C--------hhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-cc
Q psy16848 241 RH-----N-D--------VNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VG 301 (514)
Q Consensus 241 ~~-----~-d--------~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g 301 (514)
|. + + ++.+++.+++...+++++|++++++|++|...+ +++|+++|++||++||+||+|+ +|
T Consensus 189 p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~g 268 (476)
T 3i5t_A 189 PNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFG 268 (476)
T ss_dssp CCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred CcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCc
Confidence 11 1 1 567777777543356899999999999998665 9999999999999999999999 66
Q ss_pred ccCCCCCCccc-cCCCccCceEEEcCCcccccCCC----eEEEecHHHHHHHHhhc---C--ceEeccCCcHHHHHHHHH
Q psy16848 302 LYGEHGAGIGE-RDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNFIDTIRSYA---A--GFIFTTSLPPTVLAGARE 371 (514)
Q Consensus 302 ~~g~~~~~~~~-~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~~l~~~~---~--~~~~~~~~~~~~~~a~~~ 371 (514)
..|..+ ... ..+. .+|++ +++|++++ | |++++++++++.+.... . ....+++.+++.++++.+
T Consensus 269 r~G~~~--~~~~~~~v--~pdi~--t~sK~l~~-G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~a 341 (476)
T 3i5t_A 269 RCGEWF--ASEKVFGV--VPDII--TFAKGVTS-GYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALA 341 (476)
T ss_dssp TTSSSC--HHHHTTCC--CCSEE--EECGGGGT-TSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHH
T ss_pred cccCce--eeecccCC--Ccchh--hhhhhhcC-CCcCeEEEEECHHHHHHHhcCCcccccccccCCCCcCHHHHHHHHH
Confidence 655421 122 4444 68888 78899986 4 89999999998886542 1 112356789999999999
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCc---cccCCCcEEEEEeCCCc-----------cHHHHHHHHHHhCC
Q psy16848 372 AIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFP---VEHTPSHIIPIKIGNPA-----------LNTKICDMLLKEKG 436 (514)
Q Consensus 372 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~---~~~~~~~~~~i~l~~~~-----------~~~~~~~~Ll~~~G 436 (514)
+|+.+.++. +.++++++.+++++.|+++ .++ .+.+.+.++.+.+.... ....+++.|+ ++|
T Consensus 342 aL~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G 417 (476)
T 3i5t_A 342 NIELMEREG---IVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCF-ELG 417 (476)
T ss_dssp HHHHHHHTT---HHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHhHH---HHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceeEEEEecCccccccccchhHHHHHHHHHHH-HCC
Confidence 999875544 7888889999999998876 232 23456778888776431 2567888886 899
Q ss_pred eEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848 437 HYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 437 I~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~ 482 (514)
|.+.+. + +++|++++..+|++++++++++|+++++++.
T Consensus 418 v~v~~~-------g-~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~ 455 (476)
T 3i5t_A 418 LIVRPL-------G-DLCVISPPLIISRAQIDEMVAIMRQAITEVS 455 (476)
T ss_dssp EECEEE-------T-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEec-------C-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999862 1 6899999999999999999999999987653
No 62
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.97 E-value=1.2e-28 Score=257.21 Aligned_cols=348 Identities=15% Similarity=0.099 Sum_probs=238.9
Q ss_pred cCCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc--CCCcEEEEeccccc
Q psy16848 15 KSNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH--QKEAGLVFTSCYVA 87 (514)
Q Consensus 15 ~~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~--~~~~~i~~~sGt~a 87 (514)
.+|+.++||.++ ..++ ||++.+++.+++++..+.++ ...+..+...++++++++++ +.++++|++||++|
T Consensus 48 ~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~---~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA 124 (460)
T 3gju_A 48 NNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHA---YVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDA 124 (460)
T ss_dssp TTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCC---CTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHH
T ss_pred CCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcccccc---ccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHH
Confidence 377889999765 4454 79999999999998654322 23345678899999999997 45678889999999
Q ss_pred cccchhhcccc------CCCceEEe-cCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc
Q psy16848 88 NDSTLFTLGKM------IPGLHYIS-DAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT 160 (514)
Q Consensus 88 ~~~~l~~l~~~------~~gd~v~~-~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 160 (514)
+..++..+... .+++.|++ ++.+|.....+....+.....-.
T Consensus 125 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~------------------------------- 173 (460)
T 3gju_A 125 NETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNA------------------------------- 173 (460)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTT-------------------------------
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccc-------------------------------
Confidence 99999877531 24455555 45555555544444433211000
Q ss_pred CCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEe
Q psy16848 161 GAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIY 240 (514)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v 240 (514)
+......+..+
T Consensus 174 ---------------------------------------------------------------------~~~~~~~~~~~ 184 (460)
T 3gju_A 174 ---------------------------------------------------------------------FDLPRAPVLHT 184 (460)
T ss_dssp ---------------------------------------------------------------------TTCSCTTEEEE
T ss_pred ---------------------------------------------------------------------cCCCCCCCEEe
Confidence 00000111111
Q ss_pred c--C----CC------------hhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccc
Q psy16848 241 R--H----ND------------VNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVH 298 (514)
Q Consensus 241 ~--~----~d------------~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~ 298 (514)
+ . ++ .+.+++.+.+...+++++|++++++|++|...+ +++|+++|++||++||+||+|
T Consensus 185 ~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~ 264 (460)
T 3gju_A 185 EAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVV 264 (460)
T ss_dssp CCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence 1 1 11 467777776543356899999999999998766 999999999999999999999
Q ss_pred c-ccccCCCCCCccccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhh-----cCceEeccCCcHHHHHHH
Q psy16848 299 A-VGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSY-----AAGFIFTTSLPPTVLAGA 369 (514)
Q Consensus 299 ~-~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~a~ 369 (514)
+ +|..|..+ ..+..+. .+|++ +|||++++.+ |++++++++++.+... ......+++.+++.++++
T Consensus 265 ~g~gr~g~~~--~~~~~~~--~pdi~--t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa 338 (460)
T 3gju_A 265 TGFGRLGTMF--GSDHYGI--KPDLI--TIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAG 338 (460)
T ss_dssp TTTTTTSSSC--HHHHHTC--CCSEE--EECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHH
T ss_pred cCCCcccccc--hHhhcCC--CCCee--eeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCCCCCCCHHHHHHH
Confidence 9 66554322 1233333 67888 7889997732 9999999999988532 111223557899999999
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHHHHH----HhCC-CccccCCCcEEEEEeCCCc-----------cHHHHHHHHHH
Q psy16848 370 REAIRILSSQEGVELRAKHQDIVAYLRNEL----IQIG-FPVEHTPSHIIPIKIGNPA-----------LNTKICDMLLK 433 (514)
Q Consensus 370 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~g-~~~~~~~~~~~~i~l~~~~-----------~~~~~~~~Ll~ 433 (514)
.++|+.+.++. ..++++++.+++++.| .+.+ +....+.+.++.+.+.... ...++.+.|+
T Consensus 339 ~aal~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 414 (460)
T 3gju_A 339 VANLELIDEMD---LVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALA- 414 (460)
T ss_dssp HHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHH-
T ss_pred HHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEEEEccCccccccccchHHHHHHHHHHHH-
Confidence 99999775444 4455555555555555 4332 3334556778888776421 2557888886
Q ss_pred hCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 434 EKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 434 ~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
++||.+.++. ..+++|++++..+|++++++++++|+++++++
T Consensus 415 ~~Gv~v~~~~------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 456 (460)
T 3gju_A 415 ASGVIGRAMP------QGDILGFAPPLCLTREQADIVVSKTADAVKSV 456 (460)
T ss_dssp HTTEECEECS------SSCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HCCeEEecCC------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8999998654 24699999999999999999999999998765
No 63
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.97 E-value=2.8e-29 Score=257.95 Aligned_cols=330 Identities=19% Similarity=0.148 Sum_probs=237.1
Q ss_pred CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-CCCcEEEEeccccccc
Q psy16848 16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-QKEAGLVFTSCYVAND 89 (514)
Q Consensus 16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~i~~~sGt~a~~ 89 (514)
+|+.|+|+.+. ..++ ||+|++++.+++++. ...+ +......++++++++++ +.++++|++|||+|++
T Consensus 85 dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~-~~~~------~~~~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e 157 (454)
T 4ao9_A 85 DGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGG-INLT------GHNLLEGRLARLICERFPQIEQLRFTNSGTEANL 157 (454)
T ss_dssp TCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTC-SCCC------SEESSHHHHHHHHHHHSTTCSEEEEESSHHHHHH
T ss_pred CCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcC-CCcc------CCcHHHHHHHHHHHHhCCCCCEEEEeCchHHHHH
Confidence 66677777432 2233 799999999999873 2222 22355678999999987 5678888999999999
Q ss_pred cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848 90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL 169 (514)
Q Consensus 90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
.|++.. +..++|+++|.|+|+||..-
T Consensus 158 ~AiklA----------------------------------------------r~~tgr~~ii~~~~~yHG~t-------- 183 (454)
T 4ao9_A 158 MALTAA----------------------------------------------LHFTGRRKIVVFSGGYHGGV-------- 183 (454)
T ss_dssp HHHHHH----------------------------------------------HHHHTCCEEEEETTCBCSTT--------
T ss_pred HHHHHH----------------------------------------------HhcccCCeEEEEeCCcCCcc--------
Confidence 999543 33456778888888886211
Q ss_pred hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848 170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT 249 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~ 249 (514)
.+.....+. .........+|++|.+.++
T Consensus 184 ------------------~~~~~~~~~----------------------------------~~~~~~~~~~p~nd~~~l~ 211 (454)
T 4ao9_A 184 ------------------LGFGARPSP----------------------------------TTVPFDFLVLPYNDAQTAR 211 (454)
T ss_dssp ------------------CBBSSSBCT----------------------------------TSCCSEEEEECTTCHHHHH
T ss_pred ------------------ccccccccC----------------------------------ccCCCCcccCCCchHHHHH
Confidence 111000000 0011235567899999999
Q ss_pred HHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEc
Q psy16848 250 QVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG 325 (514)
Q Consensus 250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~ 325 (514)
+.+++.. +++++|+++++++..|.+.| +++|+++|++||++||+||+++ |+.|..+ ..+.+++ .+|++
T Consensus 212 ~~l~~~~-~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t-GR~G~~~--a~e~~gv--~PDi~-- 283 (454)
T 4ao9_A 212 AQIERHG-PEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT-SRLAPHG--LANKLGI--RSDLT-- 283 (454)
T ss_dssp HHHHHTG-GGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG-GGGSTTC--HHHHHTC--CCSEE--
T ss_pred HHHhhcC-CceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc-CCCcccc--chhccCC--CCcEE--
Confidence 9998764 34899999999999999988 8999999999999999999998 6665443 2345555 79999
Q ss_pred CCcccccCCC---eEEEecHHHHHHHHhhcCc--eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q psy16848 326 TLGKAFGNIG---GYIVGTKNFIDTIRSYAAG--FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI 400 (514)
Q Consensus 326 S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 400 (514)
+++|.+|+ | |++++++++.+.+...... ...+++.+++.++++.++|+.+.++. ..+++.++.++|++.|+
T Consensus 284 t~gK~lgg-G~Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~---~~~~~~~~g~~l~~~L~ 359 (454)
T 4ao9_A 284 TLGKYIGG-GMSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPE---AAGALAERGEALRARLN 359 (454)
T ss_dssp EEEGGGGT-TSSCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHHHHHHH
T ss_pred EeccccCC-CCcceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhccC---hhHHHHHHHHHHHHHHH
Confidence 99999986 4 8899999999877653222 22355789999999999999886544 67788888888888887
Q ss_pred hC----CCcc-ccCCCcEEEEEeCCC-------------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCC
Q psy16848 401 QI----GFPV-EHTPSHIIPIKIGNP-------------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFH 462 (514)
Q Consensus 401 ~~----g~~~-~~~~~~~~~i~l~~~-------------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~ 462 (514)
++ ++.. +...|.++.+.+.+. .....+...|+ ++||++.|.. .+ .++..+
T Consensus 360 ~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll-~~Gv~~~p~~---------~~--~~s~~~ 427 (454)
T 4ao9_A 360 ALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLL-NEDIYSSPRG---------FV--VLSLPL 427 (454)
T ss_dssp HHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHH-HTTEECCTTC---------EE--ECCTTC
T ss_pred HHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHH-HCCEEEcCCC---------CE--EEeCCC
Confidence 65 4322 234566888776321 11245667786 8999986422 23 344458
Q ss_pred CHHHHHHHHHHHHHHHHHcC
Q psy16848 463 TREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 463 t~e~id~~~~~l~~~l~~~~ 482 (514)
|++|||++++++++++.+.+
T Consensus 428 T~~dId~~l~al~~~l~~~~ 447 (454)
T 4ao9_A 428 TDADIDRYVAAIGSFIGGHG 447 (454)
T ss_dssp CHHHHHHHHHHHHHHHHHSG
T ss_pred CHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999875
No 64
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.97 E-value=3.2e-29 Score=257.31 Aligned_cols=352 Identities=17% Similarity=0.132 Sum_probs=244.3
Q ss_pred CCceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----C-CcEEEEecccccc
Q psy16848 16 SNRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----K-EAGLVFTSCYVAN 88 (514)
Q Consensus 16 ~g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~-~~~i~~~sGt~a~ 88 (514)
.+..+||++.+. +..+|.+.+++.+++.... ..++....|..++.+++.+.+.+.+| . +.++++++|++++
T Consensus 21 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~ 98 (410)
T 3e2y_A 21 ADPSVVNLGQGFPDISPPSYVKEELSKAAFIDN--MNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSL 98 (410)
T ss_dssp TSTTSEECSSCCCCSCCCHHHHHHHHHHHTCGG--GGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred cCCCeEEecCCCCCCCCCHHHHHHHHHHHhCcc--ccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHH
Confidence 345678886544 3357899999999887531 11111122344555555555555443 2 4567777788999
Q ss_pred ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848 89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE 168 (514)
Q Consensus 89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
..++.++.. +||.|+++.+.|......++..|.+++.++.....
T Consensus 99 ~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~---------------------------------- 142 (410)
T 3e2y_A 99 FNSIQGLVD--PGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKP---------------------------------- 142 (410)
T ss_dssp HHHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC----------------------------------
T ss_pred HHHHHHhcC--CCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccc----------------------------------
Confidence 999988866 99999999999999998888888877655431000
Q ss_pred HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848 169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL 248 (514)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l 248 (514)
..|.. ....++..+
T Consensus 143 ------------------~~g~~------------------------------------------------~~~~~~~~d 156 (410)
T 3e2y_A 143 ------------------TDGMK------------------------------------------------WTSSDWTFD 156 (410)
T ss_dssp ------------------CCSSC------------------------------------------------CBGGGEECC
T ss_pred ------------------ccccc------------------------------------------------ccccCCcCC
Confidence 00000 000011112
Q ss_pred HHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEE
Q psy16848 249 TQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIIS 324 (514)
Q Consensus 249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~ 324 (514)
.+.+++...+++++|++++++||||.+++ +++|.++|++||+++|+||+|+.+.. +....++..... ..+.++++
T Consensus 157 ~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~~~~i~~ 235 (410)
T 3e2y_A 157 PRELESKFSSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPG-MWERTITI 235 (410)
T ss_dssp HHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT-CGGGEEEE
T ss_pred HHHHHhhcCCCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCC-ccCeEEEE
Confidence 23333333457899999999999999986 89999999999999999999994433 322222222222 23567999
Q ss_pred cCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHH------hhhchHHHHHHHHHHHHHHH
Q psy16848 325 GTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRI------LSSQEGVELRAKHQDIVAYL 395 (514)
Q Consensus 325 ~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~------~~~~~~~~~~~~~~~~~~~l 395 (514)
.|+||.+|.+| ||+++++++++.+....... +.+.+++.+.++.++++. ....++++++++++++++++
T Consensus 236 ~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 313 (410)
T 3e2y_A 236 GSAGKTFSVTGWKLGWSIGPAHLIKHLQTVQQNS--FYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRM 313 (410)
T ss_dssp EEHHHHSSCGGGCCEEEECCHHHHHHHHHHHHTT--TCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHH
T ss_pred ecchhhcCCCCceEEEEEECHHHHHHHHHHHHhh--ccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHH
Confidence 99999998657 99999999998887655433 336788888888888874 12456788899999999999
Q ss_pred HHHHHhCCCccccCCCc-EEEEEeCCC---c--------cHHHHHHHHHHhCCeEEecccCCCCC----CCCcEEEEEeC
Q psy16848 396 RNELIQIGFPVEHTPSH-IIPIKIGNP---A--------LNTKICDMLLKEKGHYVQPINYPTVP----VGEEKIRLAPT 459 (514)
Q Consensus 396 ~~~L~~~g~~~~~~~~~-~~~i~l~~~---~--------~~~~~~~~Ll~~~GI~v~~~~~~~~~----~~~~~iRl~~~ 459 (514)
.+.|++.|+.+..+.++ ++++.+... . ...+++..+++++||.+.++..|... .+.+++|++++
T Consensus 314 ~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~ 393 (410)
T 3e2y_A 314 VRLLNSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFI 393 (410)
T ss_dssp HHHHHTTTCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECC
T ss_pred HHHHHHCCCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEc
Confidence 99999998887666544 566665421 1 12477787766889999998865432 23689999988
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy16848 460 PFHTREMIDKFVTDLLA 476 (514)
Q Consensus 460 ~~~t~e~id~~~~~l~~ 476 (514)
.+++++++++++|++
T Consensus 394 --~~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 394 --KKDSTLDAAEEIFRA 408 (410)
T ss_dssp --CCHHHHHHHHHHHHT
T ss_pred --CCHHHHHHHHHHHHh
Confidence 499999999999875
No 65
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.97 E-value=4.9e-29 Score=253.17 Aligned_cols=319 Identities=14% Similarity=0.099 Sum_probs=234.9
Q ss_pred CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCc----EEEEeccccccccchhhccccCCCceEE
Q psy16848 30 VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEA----GLVFTSCYVANDSTLFTLGKMIPGLHYI 105 (514)
Q Consensus 30 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~----~i~~~sGt~a~~~~l~~l~~~~~gd~v~ 105 (514)
.+|++.+++.+++.. .. .....+..+++++++++++|.+. +++++||++|+. ++.++.. +||.|+
T Consensus 13 ~~~~v~~a~~~~~~~----~~----~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~~--~gd~vi 81 (384)
T 3zrp_A 13 IKEDVLVAGLENNVG----FT----SKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLLK--PNDKIL 81 (384)
T ss_dssp CCHHHHHHTTCCSCC----TT----SHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGCC--TTCEEE
T ss_pred CCHHHHHHhhccccc----cc----cHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhcC--CCCEEE
Confidence 367777766654421 11 11235778899999999998765 677778889988 8888865 999999
Q ss_pred ecCccchhh--hhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEee
Q psy16848 106 SDAGNHASM--IQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD 183 (514)
Q Consensus 106 ~~~~~h~~~--~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (514)
++.+.|.+. ...++..|.+++.++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--------------------------------------------------- 110 (384)
T 3zrp_A 82 VVSNGVFGDRWEQIFKRYPVNVKVLRPSP--------------------------------------------------- 110 (384)
T ss_dssp EECSSHHHHHHHHHHTTSSCEEEEECCST---------------------------------------------------
T ss_pred EecCCcchHHHHHHHHHcCCcEEEecCCC---------------------------------------------------
Confidence 999888663 233344455444333210
Q ss_pred ccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEE
Q psy16848 184 EVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLV 263 (514)
Q Consensus 184 ~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~v 263 (514)
.+ ..|.+.+++.+++. ++++|
T Consensus 111 ------------~~--------------------------------------------~~d~~~l~~~i~~~---~~~~v 131 (384)
T 3zrp_A 111 ------------GD--------------------------------------------YVKPGEVEEEVRKS---EYKLV 131 (384)
T ss_dssp ------------TC--------------------------------------------CCCHHHHHHHHHHS---CEEEE
T ss_pred ------------CC--------------------------------------------CCCHHHHHHHHHhC---CCcEE
Confidence 00 11566666666542 47899
Q ss_pred EEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc-CCC-eEEEec
Q psy16848 264 AFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG-NIG-GYIVGT 341 (514)
Q Consensus 264 v~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg-~~G-G~l~~~ 341 (514)
++++++||+|.+.|+++|.++|++||+++|+|++|+.+... . +.. ..++|++++|+||+++ +.| |+++++
T Consensus 132 ~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~-----~-~~~--~~~~d~~~~s~~K~~~~~~g~g~~~~~ 203 (384)
T 3zrp_A 132 ALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEE-----V-KAE--EWNVDVYLTASQKALGSAAGLGLLLLS 203 (384)
T ss_dssp EEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSC-----C-CTT--TTTCSEEEEETTSTTCCCSSEEEEEEC
T ss_pred EEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccCcc-----c-ccc--ccCCCEEEecCcccccCCCceEEEEEC
Confidence 99999999999999999999999999999999999865431 0 111 2368999999999885 456 999999
Q ss_pred HHHHHHH-H------------hhcCc-------eEec-cCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q psy16848 342 KNFIDTI-R------------SYAAG-------FIFT-TSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI 400 (514)
Q Consensus 342 ~~~~~~l-~------------~~~~~-------~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 400 (514)
+++++.+ . ..... .... .+.+...+.++.++++.+...++++++++++++++++.+.|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 283 (384)
T 3zrp_A 204 PKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLE 283 (384)
T ss_dssp HHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 9988777 1 11100 0001 245667777777888877666678899999999999999999
Q ss_pred hCCCccccCC-----CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Q psy16848 401 QIGFPVEHTP-----SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLL 475 (514)
Q Consensus 401 ~~g~~~~~~~-----~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~ 475 (514)
+.++.+..+. +.++++.++. .+..++.+.|. ++||.+.++..+.. +++|++++..++++++++++++|+
T Consensus 284 ~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~gi~v~~g~~~~~----~~iRi~~~~~~~~e~i~~~~~~l~ 357 (384)
T 3zrp_A 284 ALGLEIVARRPESYSNTVTGVILKV-ADPQKVLAGTV-NEGVEFAPGVHPAF----KYFRIGHMGWVTPNDAIIAISVIE 357 (384)
T ss_dssp HTTCCBSCSSGGGBCSSEEEEECSS-SCHHHHHHHHH-TTTCCCEECCCTTC----CEEEEECCSSCCHHHHHHHHHHHH
T ss_pred HCCCeEccCcccccCccEEEEECCC-CCHHHHHHHHH-HCCEEEecCCCCCc----CEEEEeccccCCHHHHHHHHHHHH
Confidence 9887776554 4567788876 56789999996 88999998774221 799999998899999999999999
Q ss_pred HHHHHcCC
Q psy16848 476 AVWKSLDL 483 (514)
Q Consensus 476 ~~l~~~~~ 483 (514)
+++++++.
T Consensus 358 ~~l~~~~~ 365 (384)
T 3zrp_A 358 RTLRKLGE 365 (384)
T ss_dssp HHHHHHTC
T ss_pred HHHHHcCC
Confidence 99998764
No 66
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.97 E-value=1.7e-28 Score=253.86 Aligned_cols=354 Identities=15% Similarity=0.119 Sum_probs=230.3
Q ss_pred cCCceeeeccc---CCCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEeccccc
Q psy16848 15 KSNRVTCRLSS---VQYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVA 87 (514)
Q Consensus 15 ~~g~~~~d~~~---~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a 87 (514)
.+|+.++||.+ ..+++ +|++.+++.+++++..... ...+..+...+++++++++++ .+++++++||++|
T Consensus 26 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~----~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea 101 (430)
T 3i4j_A 26 DAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVH----GSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEA 101 (430)
T ss_dssp TTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCC----TTTCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHHH
T ss_pred CCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhccccc----ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHH
Confidence 36788999976 45665 7999999999998753211 113456788999999999985 4677888899999
Q ss_pred cccchhhcccc------CCCceEEecCccchhhhh-hhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc
Q psy16848 88 NDSTLFTLGKM------IPGLHYISDAGNHASMIQ-GIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT 160 (514)
Q Consensus 88 ~~~~l~~l~~~------~~gd~v~~~~~~h~~~~~-~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 160 (514)
+..++..+... .+++.|++.++.|+.... +....+........ ..+ .+.
T Consensus 102 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~---~~~----------~~~----------- 157 (430)
T 3i4j_A 102 TESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELY---TPL----------MRP----------- 157 (430)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTC--------------------------------------CG-----------
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCcccccccc---CCc----------CCC-----------
Confidence 99999877532 357777776666655443 33322221110000 000 000
Q ss_pred CCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEe
Q psy16848 161 GAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIY 240 (514)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v 240 (514)
..+..+
T Consensus 158 --------------------------------------------------------------------------~~~~~~ 163 (430)
T 3i4j_A 158 --------------------------------------------------------------------------EAWPKL 163 (430)
T ss_dssp --------------------------------------------------------------------------GGSCEE
T ss_pred --------------------------------------------------------------------------CCceEc
Confidence 001112
Q ss_pred cCC--------ChhHHHHHHhhccCCCceEEEEecCCC-CCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCC
Q psy16848 241 RHN--------DVNHLTQVLENMDVKIPKLVAFETVHS-MTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEH 306 (514)
Q Consensus 241 ~~~--------d~~~l~~~l~~~~~~~~~~vv~~~~~n-ptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~ 306 (514)
+.+ |.+.+++.+++...+++++|++++++| ++|...+ +++|.++|++||+++|+||+|+ ++..|..
T Consensus 164 ~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~ 243 (430)
T 3i4j_A 164 PKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSP 243 (430)
T ss_dssp CCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred CCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccch
Confidence 211 347777777754324578899999999 9998777 9999999999999999999998 5555432
Q ss_pred CCCccccC-CCccCceEEEcCCcccccCCC----eEEEecHHHHHHHHhhcCc--eEeccCCcHHHHHHHHHHHHHhhhc
Q psy16848 307 GAGIGERD-GQLHNMDIISGTLGKAFGNIG----GYIVGTKNFIDTIRSYAAG--FIFTTSLPPTVLAGAREAIRILSSQ 379 (514)
Q Consensus 307 ~~~~~~~~-~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~~ 379 (514)
. ..... +. .+|++ +|||++++ | |++++++++++.+...... ...+++.+++.++++.++|+.+.++
T Consensus 244 ~--~~~~~~~~--~~di~--t~sK~l~~-G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~ 316 (430)
T 3i4j_A 244 L--ALSRWSGV--TPDIA--VLGKGLAA-GYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVERE 316 (430)
T ss_dssp S--GGGGTTTC--CCSEE--EECGGGTT-TSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHT
T ss_pred h--hhhhhcCC--CCcEE--EEcccccC-CccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcc
Confidence 1 12223 33 57777 78999986 6 9999999999998764211 1124578999999999999977543
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhC-----CCccccCCCcEEEEEeCCC---------ccHHHHHHHHHHhCCeEEecccCC
Q psy16848 380 EGVELRAKHQDIVAYLRNELIQI-----GFPVEHTPSHIIPIKIGNP---------ALNTKICDMLLKEKGHYVQPINYP 445 (514)
Q Consensus 380 ~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~~~~~i~l~~~---------~~~~~~~~~Ll~~~GI~v~~~~~~ 445 (514)
. ..++++++.+++++.|.++ ++....+.+.++.+.+.+. ....++++.|+ ++||.+.++..+
T Consensus 317 ~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~ 392 (430)
T 3i4j_A 317 D---LTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGDLATGQAFETPGIASRIGAAAL-KRGLITYPGSGA 392 (430)
T ss_dssp T---HHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC------------CHHHHHHHHH-HTTEECC-----
T ss_pred c---HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEeccccccCCCccHHHHHHHHHHHH-hCCCEEEecccc
Confidence 3 5555566666665555543 3344456677888877531 12367889996 999999987544
Q ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 446 TVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 446 ~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
....+.+++|++++...+++++++++++|+++++++
T Consensus 393 ~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 393 EPNGRGDHLLLGPPLSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp ------CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 444456799999998999999999999999998764
No 67
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.97 E-value=3e-28 Score=248.44 Aligned_cols=340 Identities=13% Similarity=0.070 Sum_probs=239.4
Q ss_pred eeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcch-HHHHHHHHHHhHcC----CCcEEEEeccccccccc
Q psy16848 19 VTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSL-FHEKLEEDVAKLHQ----KEAGLVFTSCYVANDST 91 (514)
Q Consensus 19 ~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~----~~~~i~~~sGt~a~~~~ 91 (514)
.++||..++. ..+|++.+++.+++......++ .+..+ +.+++.+.+.+.+| .+..+++++|++++..+
T Consensus 29 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~-----~~~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~ 103 (390)
T 1d2f_A 29 DLLPFTISDMDFATAPCIIEALNQRLMHGVFGYS-----RWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSEL 103 (390)
T ss_dssp -CEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCC-----CSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHH
T ss_pred CeeEeeecCCCCCCCHHHHHHHHHHHhCCCCCCC-----CCChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHH
Confidence 5788865443 3478999999998864111111 11344 55566666655555 23466666777889889
Q ss_pred hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848 92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE 171 (514)
Q Consensus 92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
+.++.. +||.|+++.+.|.+....++..|.+++.++... + +|.|
T Consensus 104 ~~~l~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~-------------------~~~~-------------- 147 (390)
T 1d2f_A 104 IRQWSE--TGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEK-Q-------------------ADGW-------------- 147 (390)
T ss_dssp HHHSSC--TTCEEEEEESCCHHHHHHHHHTTCEEEEEECEE-C-------------------SSSE--------------
T ss_pred HHHhcC--CCCEEEEcCCCcHHHHHHHHHCCCEEEEeeccc-C-------------------CCcc--------------
Confidence 888865 999999999999999888887777766544310 0 0000
Q ss_pred hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848 172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV 251 (514)
Q Consensus 172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~ 251 (514)
..|.+.+++.
T Consensus 148 ----------------------------------------------------------------------~~d~~~l~~~ 157 (390)
T 1d2f_A 148 ----------------------------------------------------------------------FCDMGKLEAV 157 (390)
T ss_dssp ----------------------------------------------------------------------ECCHHHHHHH
T ss_pred ----------------------------------------------------------------------ccCHHHHHHH
Confidence 0145556665
Q ss_pred HhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccC-ceEEEcC
Q psy16848 252 LENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHN-MDIISGT 326 (514)
Q Consensus 252 l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~-~di~~~S 326 (514)
+++ .+++++++++++||||.++| +++|.++|++||+++|+||+|+.+.. |... .+...+..+ .|. ++|
T Consensus 158 l~~---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~---~~~~~~~~~~~d~-~~s 230 (390)
T 1d2f_A 158 LAK---PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPH---IPWSNVARGDWAL-LTS 230 (390)
T ss_dssp HTS---TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCC---CCGGGTCCSSEEE-EEC
T ss_pred hcc---CCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC---cCHHHcchhhHhh-ccC
Confidence 542 25788998999999999998 89999999999999999999995443 2221 122222112 266 889
Q ss_pred CcccccCCC---eEEEec-HHHHHHHHhhcC-ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848 327 LGKAFGNIG---GYIVGT-KNFIDTIRSYAA-GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ 401 (514)
Q Consensus 327 ~sK~lg~~G---G~l~~~-~~~~~~l~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 401 (514)
+||++|.+| |+++++ +++++.+..... ...+ .+.+++.+.++.++++.. .+.+++.+++++++++++.+.|++
T Consensus 231 ~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 308 (390)
T 1d2f_A 231 GSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGL-SSPSVLALTAHIAAYQQG-APWLDALRIYLKDNLTYIADKMNA 308 (390)
T ss_dssp SHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCC-CSCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHhhcccChhheEEEECCHHHHHHHHHHHhhhccc-CCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999998656 999885 788887776543 2211 156788888888888753 446778889999999999999998
Q ss_pred -C-CCccccCCCcE-EEEEeCCC-ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848 402 -I-GFPVEHTPSHI-IPIKIGNP-ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV 477 (514)
Q Consensus 402 -~-g~~~~~~~~~~-~~i~l~~~-~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~ 477 (514)
+ ++.+..+.+++ +++.++.. .+..++.+.|++++||.+.++..+. +...+++|++++. +++++++++++|+++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~-~~~~~~~Ris~~~--~~~~l~~~l~~l~~~ 385 (390)
T 1d2f_A 309 AFPELNWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYG-EEGRGFVRLNAGC--PRSKLEKGVAGLINA 385 (390)
T ss_dssp HCSSCCCCCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGC-GGGTTEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred hCCCCEEecCCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccC-CCCCCeEEEEecC--CHHHHHHHHHHHHHH
Confidence 5 77776666654 46777643 3577898998546899999988653 2346799999994 688999999999998
Q ss_pred HHHc
Q psy16848 478 WKSL 481 (514)
Q Consensus 478 l~~~ 481 (514)
++++
T Consensus 386 l~~~ 389 (390)
T 1d2f_A 386 IRAV 389 (390)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8764
No 68
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.97 E-value=1.9e-29 Score=256.13 Aligned_cols=335 Identities=17% Similarity=0.157 Sum_probs=237.6
Q ss_pred eeecccCCCCCChhHHHHHHHHHHHhCCCCCC-cCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccchhhcc
Q psy16848 20 TCRLSSVQYKVPKGGRKCLGEALEKFGTGAGG-TRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFTLG 96 (514)
Q Consensus 20 ~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~l~ 96 (514)
|+|++++. ..+|++.+++.+++........+ +....+..+...++++++++++|.+ .+++++|||+|+..++.++.
T Consensus 3 yld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~ 81 (382)
T 4eb5_A 3 YFDYTSAK-PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYA 81 (382)
T ss_dssp BCBTTTCC-CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHH
T ss_pred eeccCCCC-CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHH
Confidence 56776554 34789999999999863211111 1111123467889999999999975 56667778899999998886
Q ss_pred ----ccCCCceEEecCccchhhhhhhhc---CCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848 97 ----KMIPGLHYISDAGNHASMIQGIRN---SSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL 169 (514)
Q Consensus 97 ----~~~~gd~v~~~~~~h~~~~~~~~~---~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
. +||.|+++.++|.++..+++. .|.+++.++.++
T Consensus 82 ~~~~~--~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~------------------------------------- 122 (382)
T 4eb5_A 82 MRNAR--KGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK------------------------------------- 122 (382)
T ss_dssp HHHGG--GCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCT-------------------------------------
T ss_pred hhccC--CCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCC-------------------------------------
Confidence 5 999999999999988765532 344443332210
Q ss_pred hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848 170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT 249 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~ 249 (514)
.+ ..|.+.++
T Consensus 123 --------------------------~~--------------------------------------------~~d~~~l~ 132 (382)
T 4eb5_A 123 --------------------------YG--------------------------------------------EVDVSFID 132 (382)
T ss_dssp --------------------------TS--------------------------------------------CBCHHHHH
T ss_pred --------------------------CC--------------------------------------------ccCHHHHH
Confidence 00 01444444
Q ss_pred HHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcc
Q psy16848 250 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK 329 (514)
Q Consensus 250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK 329 (514)
+.+ ++++++|++++++||||.++|+++|.++|++||++ |+|++|+++.. ++ +.. ..++|++++|+||
T Consensus 133 ~~i----~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~-----~~-~~~--~~~~di~~~s~sK 199 (382)
T 4eb5_A 133 QKL----RDDTILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQI-----EV-DVE--KIGADMLTISSND 199 (382)
T ss_dssp HHC----CTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTB-----CC-CHH--HHTCSEEEEETGG
T ss_pred HHh----cCCCeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCc-----cc-Ccc--ccCCCEEEeehHH
Confidence 444 34689999999999999999999999999999999 99999996532 11 111 1257999999999
Q ss_pred cccCCC-eEEEecHHHHHHHHhhcCc-----eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-
Q psy16848 330 AFGNIG-GYIVGTKNFIDTIRSYAAG-----FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI- 402 (514)
Q Consensus 330 ~lg~~G-G~l~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 402 (514)
++|+.| |+++++++. .+.....+ .....+.+...+.++.++++.+. +++++++++++++++++.+.|+++
T Consensus 200 ~~g~~g~G~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~ 276 (382)
T 4eb5_A 200 IYGPKGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITA-MEWREEAERLRRLRDRIIDNVLKIE 276 (382)
T ss_dssp GTCCSSCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred hcCCCceEEEEEcccc--ccCceecCCCccccccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhCC
Confidence 988767 888887663 12211110 00112456666777777887664 357788999999999999999987
Q ss_pred CCccccCC----CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC----------------CCCcEEEEEeCCCC
Q psy16848 403 GFPVEHTP----SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP----------------VGEEKIRLAPTPFH 462 (514)
Q Consensus 403 g~~~~~~~----~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~----------------~~~~~iRl~~~~~~ 462 (514)
++.+..+. ++++.+.++. .+..++.+.|. ++||.+.++..|... .+.+++|++++..+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~ 354 (382)
T 4eb5_A 277 ESYLNGHPEKRLPNNVNVRFSY-IEGESIVLSLD-MAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYN 354 (382)
T ss_dssp TEEECSCSSSBCTTEEEEEETT-SCHHHHHHHHH-HHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTC
T ss_pred CeEEeCCcccCCCCEEEEEeCC-cCHHHHHHHHH-HCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCC
Confidence 77665443 4577788773 45778999995 899999987653321 12579999999888
Q ss_pred CHHHHHHHHHHHHHHHHHcC
Q psy16848 463 TREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 463 t~e~id~~~~~l~~~l~~~~ 482 (514)
+++++++++++|++++++++
T Consensus 355 ~~~~i~~~~~~l~~~~~~~~ 374 (382)
T 4eb5_A 355 TDEDVDRLLEVLPGVIERLR 374 (382)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987754
No 69
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.97 E-value=8.2e-29 Score=253.89 Aligned_cols=338 Identities=14% Similarity=0.115 Sum_probs=239.1
Q ss_pred CceeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccC--cchHHHHHHHHHHhHcCCC--cEEEEeccccccccch
Q psy16848 17 NRVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISG--NSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTL 92 (514)
Q Consensus 17 g~~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l 92 (514)
+..++|++++. ..+|++.+++.+++.....+.. +.+.++ ..+..+++++++++++|.+ ..+++++||+++..++
T Consensus 26 ~~~~ld~~~~~-~~~~~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~ 103 (406)
T 3cai_A 26 GWVHFDAPAGM-LIPDSVATTVSTAFRRSGASTV-GAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLA 103 (406)
T ss_dssp SCEECBGGGCC-CCCHHHHHHHHHHHHHCCSSSC-SSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHH
T ss_pred CeEEEeCCCcC-CCCHHHHHHHHHHHHhcCCCCC-CccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHH
Confidence 45677877665 4578999999999987432221 122221 3467889999999999975 4565666677777777
Q ss_pred hhcc-ccCCCceEEecCccchhhhhhhhc----CCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848 93 FTLG-KMIPGLHYISDAGNHASMIQGIRN----SSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK 167 (514)
Q Consensus 93 ~~l~-~~~~gd~v~~~~~~h~~~~~~~~~----~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
.++. ...+||.|+++.++|.++...+.. .|.+++.++.+. +
T Consensus 104 ~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~-~--------------------------------- 149 (406)
T 3cai_A 104 EASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDI-E--------------------------------- 149 (406)
T ss_dssp HHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCT-T---------------------------------
T ss_pred HHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCc-c---------------------------------
Confidence 6662 134999999999999987655432 344443332210 0
Q ss_pred HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848 168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH 247 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~ 247 (514)
.+ ..|.+.
T Consensus 150 ----------------------------~~--------------------------------------------~~d~~~ 157 (406)
T 3cai_A 150 ----------------------------TG--------------------------------------------ELPTWQ 157 (406)
T ss_dssp ----------------------------TC--------------------------------------------CCCGGG
T ss_pred ----------------------------cC--------------------------------------------CcCHHH
Confidence 00 014555
Q ss_pred HHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCC
Q psy16848 248 LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 327 (514)
Q Consensus 248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~ 327 (514)
+++.+. +++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.|... + +.. ..++|++++|+
T Consensus 158 l~~~l~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~-----~-~~~--~~~~d~~~~s~ 225 (406)
T 3cai_A 158 WESLIS----KSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRL-----L-DIR--ETDADVVTVNA 225 (406)
T ss_dssp HHHHCC----TTEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCC-----C-CHH--HHCCSEEEEEG
T ss_pred HHHHhC----CCceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCC-----C-Cch--hcCCCEEEeeh
Confidence 655553 46899999999999999999999999999999999999999865421 1 111 23689999999
Q ss_pred cccccCCCe-EEEecHHHHHHHHhhcCce------Ee-ccCCcHHHHHHHHHHHHHhhhc--------------hHHHHH
Q psy16848 328 GKAFGNIGG-YIVGTKNFIDTIRSYAAGF------IF-TTSLPPTVLAGAREAIRILSSQ--------------EGVELR 385 (514)
Q Consensus 328 sK~lg~~GG-~l~~~~~~~~~l~~~~~~~------~~-~~~~~~~~~~a~~~~l~~~~~~--------------~~~~~~ 385 (514)
||++|+.+| ++++++++++.+......+ .+ ..+.+...++++.++++.+... ++++++
T Consensus 226 ~K~~g~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~ 305 (406)
T 3cai_A 226 HAWGGPPIGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSAD 305 (406)
T ss_dssp GGGTSCSCEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHH
T ss_pred hhhcCCCcCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHH
Confidence 999886457 9999998887775543210 01 2245666777777778766432 367888
Q ss_pred HHHHHHHHHHHHHHHhC-CCccccC---CCcEEEEEeCCCccHHHHHHHHHHhCCeEEeccc------CCCCCCCCcEEE
Q psy16848 386 AKHQDIVAYLRNELIQI-GFPVEHT---PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPIN------YPTVPVGEEKIR 455 (514)
Q Consensus 386 ~~~~~~~~~l~~~L~~~-g~~~~~~---~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~------~~~~~~~~~~iR 455 (514)
++++++++++.+.|+++ ++.+..+ .++++.+.++. .+..++.+.|. ++||.+.++. .+..+.+.+++|
T Consensus 306 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~-~~gi~v~~g~~~~~~~~~g~~~~~~~iR 383 (406)
T 3cai_A 306 AYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVHK-VPADRVVQRLA-DNGILAIANTGSRVLDVLGVNDVGGAVT 383 (406)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEETT-BCHHHHHHHHH-HTTEECEECCSCHHHHHHTTTTTTCCEE
T ss_pred HHHHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEECC-cCHHHHHHHHH-HCCcEEecCChHHHHHHcCCCCCCCeEE
Confidence 99999999999999987 7766544 25578888764 45778999995 8999998775 111122357899
Q ss_pred EEeCCCCCHHHHHHHHHHHHH
Q psy16848 456 LAPTPFHTREMIDKFVTDLLA 476 (514)
Q Consensus 456 l~~~~~~t~e~id~~~~~l~~ 476 (514)
++++..++++++++++++|++
T Consensus 384 is~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 384 VGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp EECCTTCCHHHHHHHHHHHHT
T ss_pred EEeecCCCHHHHHHHHHHHHH
Confidence 999988899999999999875
No 70
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.97 E-value=1.7e-30 Score=262.97 Aligned_cols=336 Identities=10% Similarity=0.057 Sum_probs=237.4
Q ss_pred eeeecccCCCCCChhHHHHHHHHHHHhCC-CCC-CcCcccCcchHHHHHHHH-HHhHcCCCcEEEEec-cccccccchhh
Q psy16848 19 VTCRLSSVQYKVPKGGRKCLGEALEKFGT-GAG-GTRNISGNSLFHEKLEED-VAKLHQKEAGLVFTS-CYVANDSTLFT 94 (514)
Q Consensus 19 ~~~d~~~~~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~-la~~~~~~~~i~~~s-Gt~a~~~~l~~ 94 (514)
.++|++.+....+|++.+++.+++..... .++ .+...++..+...+++++ +++++|.+ .+++++ ||+|+..++.+
T Consensus 10 i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~-~v~~~~g~t~a~~~~~~~ 88 (371)
T 2e7j_A 10 INIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD-VARVTNGAREAKFAVMHS 88 (371)
T ss_dssp EECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS-EEEEESSHHHHHHHHHHH
T ss_pred EEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC-EEEEeCChHHHHHHHHHH
Confidence 45555433444578999999988875321 111 112223345677899999 99999988 555555 57899999988
Q ss_pred ccccCCCceEEecCccchhhhhhhhcCCCCeeecc--CCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848 95 LGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYR--HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV 172 (514)
Q Consensus 95 l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~--~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
+.. +||.|+++.++|.+...+++..|.+++.++ .++.
T Consensus 89 ~~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~--------------------------------------- 127 (371)
T 2e7j_A 89 LAK--KDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPD--------------------------------------- 127 (371)
T ss_dssp HCC--TTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTT---------------------------------------
T ss_pred HhC--CCCEEEEccCcchHHHHHHHHcCCeEEEeecccCCC---------------------------------------
Confidence 865 999999999999999988888888777665 3200
Q ss_pred hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848 173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL 252 (514)
Q Consensus 173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l 252 (514)
. .-|.+.+++.+
T Consensus 128 -----------------------~---------------------------------------------~~d~~~l~~~l 139 (371)
T 2e7j_A 128 -----------------------Y---------------------------------------------AITPENFAQTI 139 (371)
T ss_dssp -----------------------C---------------------------------------------CCCHHHHHHHH
T ss_pred -----------------------C---------------------------------------------CcCHHHHHHHH
Confidence 0 00445555555
Q ss_pred hhccC-CCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848 253 ENMDV-KIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF 331 (514)
Q Consensus 253 ~~~~~-~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l 331 (514)
++... ++++++++++++||+|.++|+++|.++|++||+++|+|++|+.+... + ... ..++|++++|+||++
T Consensus 140 ~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~-----~-~~~--~~~~di~~~s~sK~~ 211 (371)
T 2e7j_A 140 EETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMP-----V-SLK--EIGADFIVGSGHKSM 211 (371)
T ss_dssp HHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBC-----C-CHH--HHTCSEEEEEHHHHS
T ss_pred HhhcccCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCC-----C-Chh--hcCCCEEEecCCcCC
Confidence 43211 35789999999999999999999999999999999999999975431 1 111 225789999999988
Q ss_pred cCC-C-eEEEecHHHHHH-HHhhcCceEe-----ccCCcHHHHHHHHHHHHHhhhchHHHHHHHH--HHHHHHHHHHHHh
Q psy16848 332 GNI-G-GYIVGTKNFIDT-IRSYAAGFIF-----TTSLPPTVLAGAREAIRILSSQEGVELRAKH--QDIVAYLRNELIQ 401 (514)
Q Consensus 332 g~~-G-G~l~~~~~~~~~-l~~~~~~~~~-----~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~--~~~~~~l~~~L~~ 401 (514)
+++ + |++++++++++. +.....++.. ..+.++..++++.++++.+.. ++.+++ +++++++.+.|++
T Consensus 212 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~ 287 (371)
T 2e7j_A 212 AASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRE----RIKRWDEEVEKARRFAAEMEK 287 (371)
T ss_dssp SCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH----HGGGHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 653 3 999999888776 6554432111 234566667777777776643 467777 8889999999988
Q ss_pred CCCccccC---CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCC---CCCCcEEE-EEeCCC-CCHHHHHHHHHH
Q psy16848 402 IGFPVEHT---PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTV---PVGEEKIR-LAPTPF-HTREMIDKFVTD 473 (514)
Q Consensus 402 ~g~~~~~~---~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~---~~~~~~iR-l~~~~~-~t~e~id~~~~~ 473 (514)
.++.+..+ .++++++.++ +..++.+.|. ++||.+.+ ..+.. ...++++| ++++.. ++++++++++++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~-~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~ 362 (371)
T 2e7j_A 288 LGIKQLGDNPHNHDLMFFHAE---VLYEISKKAK-GGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNA 362 (371)
T ss_dssp TTCEEESSSSCCSSEEEEECH---HHHHHHHHSS-SGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHH
T ss_pred cCcEEecCCCccCceEEEECC---CHHHHHHHHH-HCCEEEEe-ccccccccCCCCCceEEEEeeccCCCHHHHHHHHHH
Confidence 88777654 4678888876 4678888885 89999987 32221 11257899 999977 899999999999
Q ss_pred HHHHHHHc
Q psy16848 474 LLAVWKSL 481 (514)
Q Consensus 474 l~~~l~~~ 481 (514)
|+++++++
T Consensus 363 l~~~~~~~ 370 (371)
T 2e7j_A 363 FKEIIEKY 370 (371)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 99998765
No 71
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.97 E-value=1.6e-28 Score=251.95 Aligned_cols=323 Identities=15% Similarity=0.144 Sum_probs=237.4
Q ss_pred CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCc---EEEEeccccccccchhhccccCCCceEEe
Q psy16848 30 VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEA---GLVFTSCYVANDSTLFTLGKMIPGLHYIS 106 (514)
Q Consensus 30 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~i~~~sGt~a~~~~l~~l~~~~~gd~v~~ 106 (514)
.+|++.+++.+++ .... .....+..++++++++++++.+. .++++||++|+..++.++.. +||.|++
T Consensus 24 ~~~~v~~a~~~~~----~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~~--~gd~Vl~ 93 (411)
T 3nnk_A 24 ADPRVLRAMSSQL----IGQY----DPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIR--PGDKVLV 93 (411)
T ss_dssp CCHHHHHHHTSCC----CCTT----CHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHCC--TTCEEEE
T ss_pred CCHHHHHHhhccc----cccc----cHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhcC--CCCEEEE
Confidence 3677766665432 1111 11224677899999999998654 34445678999999988865 9999999
Q ss_pred cCccchh--hhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeec
Q psy16848 107 DAGNHAS--MIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDE 184 (514)
Q Consensus 107 ~~~~h~~--~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (514)
+.+.|.+ ....++..|.+++.++.++
T Consensus 94 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~---------------------------------------------------- 121 (411)
T 3nnk_A 94 PVFGRFGHLLCEIARRCRAEVHTIEVPW---------------------------------------------------- 121 (411)
T ss_dssp EECSHHHHHHHHHHHHTTCEEEEEECCT----------------------------------------------------
T ss_pred ecCCchHHHHHHHHHHcCCeEEEEecCC----------------------------------------------------
Confidence 9999977 5555666666555443310
Q ss_pred cccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEE
Q psy16848 185 VHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVA 264 (514)
Q Consensus 185 ~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv 264 (514)
.+ ..|.+.+++.+++. ++++|+
T Consensus 122 -----------~~--------------------------------------------~~d~~~l~~~i~~~---~~~~v~ 143 (411)
T 3nnk_A 122 -----------GE--------------------------------------------VFTPDQVEDAVKRI---RPRLLL 143 (411)
T ss_dssp -----------TC--------------------------------------------CCCHHHHHHHHHHH---CCSEEE
T ss_pred -----------CC--------------------------------------------CCCHHHHHHHHhhC---CCeEEE
Confidence 00 01556666666542 478999
Q ss_pred EecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc-cCCC-eEEEecH
Q psy16848 265 FETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF-GNIG-GYIVGTK 342 (514)
Q Consensus 265 ~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l-g~~G-G~l~~~~ 342 (514)
+++++||+|.+.|+++|.++|++||+++|+|++++++... ......++|++++|+||++ ++.| |++++++
T Consensus 144 ~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~--------~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~ 215 (411)
T 3nnk_A 144 TVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNP--------LETDVWGLDAVSAGMQKCLGGPSGTSPITLSA 215 (411)
T ss_dssp EESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBC--------CCTTTTTCSEEECCSTTTTCCCSSEEEEEECH
T ss_pred EeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcc--------cchhccCCcEEEecCccccCCCCceEEEEECH
Confidence 9999999999999999999999999999999999865431 1111236899999999985 5556 9999999
Q ss_pred HHHHHHHhhc----------------------------------CceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHH
Q psy16848 343 NFIDTIRSYA----------------------------------AGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKH 388 (514)
Q Consensus 343 ~~~~~l~~~~----------------------------------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 388 (514)
++++.+.... .......+.+...++++.++++.....+++++++++
T Consensus 216 ~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~ 295 (411)
T 3nnk_A 216 RMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARH 295 (411)
T ss_dssp HHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9998887643 000012345777778888888877655678899999
Q ss_pred HHHHHHHHHHHHhCCCccccCC----CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEe-CCCCC
Q psy16848 389 QDIVAYLRNELIQIGFPVEHTP----SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP-TPFHT 463 (514)
Q Consensus 389 ~~~~~~l~~~L~~~g~~~~~~~----~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~-~~~~t 463 (514)
+++++++.+.|++.++.+..+. +.++.+.+++..+..++.+.|++++||.++++.. +...+++|+++ +..++
T Consensus 296 ~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~---~~~~~~iRi~~~~~~~~ 372 (411)
T 3nnk_A 296 KLHGDALVKGIQAMGLETFGDLKHKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFG---PLHGKVWRIGTMGYNAR 372 (411)
T ss_dssp HHHHHHHHHHHHHTTCCBCSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHSEEEEECCG---GGTTTEEEEECCGGGCS
T ss_pred HHHHHHHHHHHHHcCCEeCCCcccccccEEEEECCCCCCHHHHHHHHHHhcCeEEeCccC---CCCCCEEEEeCccCcCC
Confidence 9999999999999887765443 4577788876567889999997444999997643 22356999998 66678
Q ss_pred HHHHHHHHHHHHHHHHHcCC
Q psy16848 464 REMIDKFVTDLLAVWKSLDL 483 (514)
Q Consensus 464 ~e~id~~~~~l~~~l~~~~~ 483 (514)
++++++++++|++++++++.
T Consensus 373 ~~~i~~~~~~l~~~l~~~~~ 392 (411)
T 3nnk_A 373 KDCVMTTLSALEAVLNYLKF 392 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999998764
No 72
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.97 E-value=1.1e-28 Score=251.23 Aligned_cols=316 Identities=16% Similarity=0.145 Sum_probs=233.6
Q ss_pred ChhHHHHHHHHHHHhCCCCCCcCcccC-cchHHHHHHHHHHhHcCCC--cEEEEeccccccccchhhc-cccCCCceEEe
Q psy16848 31 PKGGRKCLGEALEKFGTGAGGTRNISG-NSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFTL-GKMIPGLHYIS 106 (514)
Q Consensus 31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~l-~~~~~gd~v~~ 106 (514)
++++.+++.+++.........+...+. ..+...++++.+++++|.+ .+++++|||+|+..++.++ .. +||.|++
T Consensus 29 ~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~--~gd~vl~ 106 (390)
T 1elu_A 29 PTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWH--QGDEILL 106 (390)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCC--TTCEEEE
T ss_pred CHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCCCC--CCCEEEE
Confidence 568999999998864311100000111 1356789999999999865 5777888999999999888 55 9999999
Q ss_pred cCccchhhhhhh----hcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEe
Q psy16848 107 DAGNHASMIQGI----RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFV 182 (514)
Q Consensus 107 ~~~~h~~~~~~~----~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (514)
+.++|.+...++ +..|.++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~g~~~--------------------------------------------------------- 129 (390)
T 1elu_A 107 TDCEHPGIIAIVQAIAARFGITY--------------------------------------------------------- 129 (390)
T ss_dssp ETTCCHHHHHHHHHHHHHHCCEE---------------------------------------------------------
T ss_pred ecCcccHHHHHHHHHHHHhCcEE---------------------------------------------------------
Confidence 999999876432 2334433
Q ss_pred eccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC---CChhHHHHHHhhccCCC
Q psy16848 183 DEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH---NDVNHLTQVLENMDVKI 259 (514)
Q Consensus 183 ~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~---~d~~~l~~~l~~~~~~~ 259 (514)
+.++. .++..+.+.+++..+++
T Consensus 130 -------------------------------------------------------~~v~~~~~~~~~~d~~~l~~~i~~~ 154 (390)
T 1elu_A 130 -------------------------------------------------------RFFPVAATLNQGDAAAVLANHLGPK 154 (390)
T ss_dssp -------------------------------------------------------EEECCGGGSSSSCHHHHHHTTCCTT
T ss_pred -------------------------------------------------------EEEcCCCCCCccchHHHHHHhcCCC
Confidence 33332 23333445555555567
Q ss_pred ceEEEEecCCCCCccccCHHHHHHHHH----HcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcc-cccCC
Q psy16848 260 PKLVAFETVHSMTGAICPLKELCEVSH----QHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK-AFGNI 334 (514)
Q Consensus 260 ~~~vv~~~~~nptG~~~~l~~l~~l~~----~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK-~lg~~ 334 (514)
+++|++++++||+|.++|+++|.++|+ ++|+++|+|++|++|... + +.. ..++|++++|+|| .+++.
T Consensus 155 ~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~-----~-~~~--~~~~d~~~~s~~K~~~~~~ 226 (390)
T 1elu_A 155 TRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLP-----L-DFS--RLEVDYYAFTGHKWFAGPA 226 (390)
T ss_dssp EEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBC-----C-CTT--TSCCSEEEEESSSTTCCCT
T ss_pred ceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcC-----C-Chh--hcCCCEEEccccccccCCC
Confidence 999999999999999999999999999 999999999999965431 1 111 2368999999999 44666
Q ss_pred C-eEEEecHHHHHHHHhhcC---------------------ceEeccCCcHHHHHHHHHHHHHhhhc-hHHHHHHHHHHH
Q psy16848 335 G-GYIVGTKNFIDTIRSYAA---------------------GFIFTTSLPPTVLAGAREAIRILSSQ-EGVELRAKHQDI 391 (514)
Q Consensus 335 G-G~l~~~~~~~~~l~~~~~---------------------~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~ 391 (514)
| |++++++++++.+..... .+. ..+.+...+.++.++++.+.+. ++++++++++++
T Consensus 227 g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~ 305 (390)
T 1elu_A 227 GVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFE-VATSAYPQYAGLLAALQLHQRQGTAEERYQAICQR 305 (390)
T ss_dssp TCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGC-CSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhC-CCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7 999999888776654221 111 1245667777777788766543 378899999999
Q ss_pred HHHHHHHHHhC-CCcccc---CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHH
Q psy16848 392 VAYLRNELIQI-GFPVEH---TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI 467 (514)
Q Consensus 392 ~~~l~~~L~~~-g~~~~~---~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~i 467 (514)
++++.+.|+++ |+.+.. +.++++.+.++...+..++.+.|. ++||.+.++. .++++|++++..++++++
T Consensus 306 ~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~------~~~~iRis~~~~~~~~~i 378 (390)
T 1elu_A 306 SEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPLGHRAIVQKLE-EQRIYLRTIA------DPDCIRACCHYITDEEEI 378 (390)
T ss_dssp HHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSSCHHHHHHHHH-HTTEECEEET------TTTEEEEECCTTCCHHHH
T ss_pred HHHHHHHHHhcCCcEEecCccccccEEEEEcCCCCCHHHHHHHHH-HCCEEEEecC------CCCeEEEecccCCCHHHH
Confidence 99999999997 777663 457788888865556788999995 8999998765 246899999888999999
Q ss_pred HHHHHHHHH
Q psy16848 468 DKFVTDLLA 476 (514)
Q Consensus 468 d~~~~~l~~ 476 (514)
++++++|++
T Consensus 379 ~~~~~~l~~ 387 (390)
T 1elu_A 379 NHLLARLAD 387 (390)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999999875
No 73
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.97 E-value=7.9e-29 Score=251.35 Aligned_cols=299 Identities=20% Similarity=0.168 Sum_probs=226.9
Q ss_pred hHHHHHHHHHHhHcC---CCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHH
Q psy16848 60 LFHEKLEEDVAKLHQ---KEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHL 136 (514)
Q Consensus 60 ~~~~~~~~~la~~~~---~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l 136 (514)
....++++.++++++ .+++++++||++|+..++.++.+ +||+|+++.+.|.+....++..|++++.++.+..+
T Consensus 63 ~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-- 138 (375)
T 3op7_A 63 EGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLIE--PGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEEN-- 138 (375)
T ss_dssp TCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHCC--TTCEEEEEESSCTHHHHHHHHTTCEEEEEEEEGGG--
T ss_pred CChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhcC--CCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccC--
Confidence 335788999999863 36778888899999999998866 99999999999999888877777766654431000
Q ss_pred HHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhcc
Q psy16848 137 TQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLV 216 (514)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~ 216 (514)
+.
T Consensus 139 ----------------------------------------------------------~~-------------------- 140 (375)
T 3op7_A 139 ----------------------------------------------------------GW-------------------- 140 (375)
T ss_dssp ----------------------------------------------------------TT--------------------
T ss_pred ----------------------------------------------------------CC--------------------
Confidence 00
Q ss_pred CCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEE
Q psy16848 217 NPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTF 293 (514)
Q Consensus 217 ~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li 293 (514)
..|.+.+++.+ ++++++|++++++||+|.++| +++|.++|++||+++|
T Consensus 141 -------------------------~~d~~~l~~~l----~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li 191 (375)
T 3op7_A 141 -------------------------LPDLEKLRQLI----RPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYIL 191 (375)
T ss_dssp -------------------------EECHHHHHHHC----CTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEE
T ss_pred -------------------------CCCHHHHHHhh----ccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 00344444444 356889999999999999999 9999999999999999
Q ss_pred EeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHH
Q psy16848 294 VDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAR 370 (514)
Q Consensus 294 ~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~ 370 (514)
+||+|+.+..+ . ...... ..+.+++++||||.+|.+| |++++++++++.+......+ +.+.++..++++.
T Consensus 192 ~De~~~~~~~~-~---~~~~~~-~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~ 264 (375)
T 3op7_A 192 SDEVYRSFSEL-D---VPSIIE-VYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYT--MICAGVFDDLVAQ 264 (375)
T ss_dssp EECCSCCCSSS-C---CCCHHH-HCTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGGT--TSCCCHHHHHHHH
T ss_pred EEccccccccc-C---CCchhh-hcCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHHHHhhh--ccCCCcHHHHHHH
Confidence 99999954432 1 111111 1356788899999998556 99999999999998766554 3466788888888
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccccCCC-cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC
Q psy16848 371 EAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEHTPS-HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP 448 (514)
Q Consensus 371 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~ 448 (514)
.+++.. +..+++.+++++++++++.+.|++. ++.+..+.+ .+.++.++...+..++++.+++++||.+.++..+..
T Consensus 265 ~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~- 342 (375)
T 3op7_A 265 LALAHY-QEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDMPMEDFCLQLLQEHGVLLVPGNRFER- 342 (375)
T ss_dssp HHHHTH-HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSSCHHHHHHHHHHHHCEECEEGGGGTC-
T ss_pred HHHhcc-HHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCCCHHHHHHHHHHhCCEEEeChhhhCC-
Confidence 888754 3456778888899999999999986 666655544 355666666566788888886689999999886543
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848 449 VGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 449 ~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~ 482 (514)
.+++|++++ .+.+++++++++|+++++++.
T Consensus 343 --~~~iRi~~~--~~~~~i~~~l~~l~~~l~~~~ 372 (375)
T 3op7_A 343 --DGYVRLGFA--CEQETLIKGLEKLSQFLRRFD 372 (375)
T ss_dssp --TTEEEECCC--SCHHHHHHHHHHHHHHHGGGC
T ss_pred --CCeEEEEec--CCHHHHHHHHHHHHHHHHHHh
Confidence 579999987 456899999999999998764
No 74
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.97 E-value=5.9e-29 Score=254.42 Aligned_cols=341 Identities=16% Similarity=0.095 Sum_probs=244.2
Q ss_pred CceeeecccC--CCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC--CcEEEEecccccccc
Q psy16848 17 NRVTCRLSSV--QYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK--EAGLVFTSCYVANDS 90 (514)
Q Consensus 17 g~~~~d~~~~--~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~i~~~sGt~a~~~ 90 (514)
+..++||.++ ++. .+|++.+++.+++++.+.... .++......++++.+++++|. +..+++++|++++..
T Consensus 31 ~~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~----~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~ 106 (397)
T 2zyj_A 31 RPGILSFAGGLPAPELFPKEEAAEAAARILREKGEVAL----QYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDL 106 (397)
T ss_dssp STTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHHHHHT----SCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHH
T ss_pred CCCceecCCCCCCchhCCHHHHHHHHHHHHHhcchhhh----CCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHH
Confidence 4568999654 332 367899999999876321001 111222346788888888875 345666666778888
Q ss_pred chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848 91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 170 (514)
Q Consensus 91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
++.++.. +||.|+++.+.|.+....++..|.+++.++.++ +
T Consensus 107 ~~~~~~~--~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~------------------------------------ 147 (397)
T 2zyj_A 107 VGKVFLD--EGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGE-E------------------------------------ 147 (397)
T ss_dssp HHHHHCC--TTCEEEEEESCCHHHHHHHHTTCCEEEEEEEET-T------------------------------------
T ss_pred HHHHhCC--CCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCC-C------------------------------------
Confidence 8888865 999999999999999888877777666543310 0
Q ss_pred hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848 171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ 250 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ 250 (514)
..|.+.+++
T Consensus 148 -----------------------------------------------------------------------~~d~~~l~~ 156 (397)
T 2zyj_A 148 -----------------------------------------------------------------------GPDLDALEE 156 (397)
T ss_dssp -----------------------------------------------------------------------EECHHHHHH
T ss_pred -----------------------------------------------------------------------CCCHHHHHH
Confidence 014556666
Q ss_pred HHhhccCCCceEE-EEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCcc---CceE
Q psy16848 251 VLENMDVKIPKLV-AFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLH---NMDI 322 (514)
Q Consensus 251 ~l~~~~~~~~~~v-v~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~---~~di 322 (514)
.+++. +++++ ++++++||||.++| +++|.++|++||+++|+||+|+.+.. +....++... + .. +.++
T Consensus 157 ~l~~~---~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~-~-~~~~~~~~i 231 (397)
T 2zyj_A 157 VLKRE---RPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFEL-A-REAGYPGVI 231 (397)
T ss_dssp HHHHC---CCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHH-H-HHHTCCCEE
T ss_pred HHhhc---CCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhh-C-cccCCCeEE
Confidence 66541 35676 67999999999998 56999999999999999999995443 2211111111 1 11 3568
Q ss_pred EEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q psy16848 323 ISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNEL 399 (514)
Q Consensus 323 ~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 399 (514)
+++|+||+++ +| ||+++++++++.+......+ +.+.+++.+.++.++++....+++++.+++++++++++.+.|
T Consensus 232 ~~~s~sK~~~-~G~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 308 (397)
T 2zyj_A 232 YLGSFSKVLS-PGLRVAFAVAHPEALQKLVQAKQGA--DLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHAL 308 (397)
T ss_dssp EEEESTTTTC-GGGCCEEEECCHHHHHHHHHHHHHH--HSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccccccc-ccceeEEEecCHHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999 57 99999999998887655443 335578888888877764211456778888899999999999
Q ss_pred HhC---CCccccC-CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC-CCCcEEEEEeCCCCCHHHHHHHHHHH
Q psy16848 400 IQI---GFPVEHT-PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP-VGEEKIRLAPTPFHTREMIDKFVTDL 474 (514)
Q Consensus 400 ~~~---g~~~~~~-~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~-~~~~~iRl~~~~~~t~e~id~~~~~l 474 (514)
++. |+.+..+ .+.++++.++...+..++.+.|. ++||.+.++..+... .+.+++|++++.. +++++++++++|
T Consensus 309 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~~~i~~~~~~l 386 (397)
T 2zyj_A 309 DREVPKEVRYTRPKGGMFVWMELPKGLSAEGLFRRAL-EENVAFVPGGPFFANGGGENTLRLSYATL-DREGIAEGVRRL 386 (397)
T ss_dssp HHHSCTTSEECCCSBSSEEEEECSTTCCHHHHHHHHH-HTTEEEEESGGGCTTSCCTTEEEEECSSS-CHHHHHHHHHHH
T ss_pred HHHCCCCeEEccCCccEEEEEEcCCCCCHHHHHHHHH-HCCCEEechHHhcCCCCCCCeEEEEcCCC-CHHHHHHHHHHH
Confidence 875 6776544 35577888876556788999996 789999998754322 2467999999864 899999999999
Q ss_pred HHHHHHc
Q psy16848 475 LAVWKSL 481 (514)
Q Consensus 475 ~~~l~~~ 481 (514)
+++++++
T Consensus 387 ~~~l~~~ 393 (397)
T 2zyj_A 387 GRALKGL 393 (397)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 75
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.97 E-value=7.8e-29 Score=249.87 Aligned_cols=330 Identities=13% Similarity=0.128 Sum_probs=238.2
Q ss_pred eeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC----cEEEEeccccccccchhhc
Q psy16848 20 TCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE----AGLVFTSCYVANDSTLFTL 95 (514)
Q Consensus 20 ~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~i~~~sGt~a~~~~l~~l 95 (514)
.+|+..+.+..+|++.+++.+++ + . .......+...++++++++++|.+ .+++++|||+|+..++.++
T Consensus 5 ~~~~~~gp~~~~~~v~~a~~~~~---~--~---~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~ 76 (366)
T 1m32_A 5 YLLLTPGPLTTSRTVKEAMLFDS---C--T---WDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSA 76 (366)
T ss_dssp CEECSSSSCCCCHHHHHTTCCCC---C--T---TSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHS
T ss_pred cccccCCCcCCCHHHHHHHhhhh---c--C---CCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHh
Confidence 56776555556888888877632 1 1 110001156789999999999843 4677888899999999888
Q ss_pred cccCCCceEEec-Cccchhh-hhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhh
Q psy16848 96 GKMIPGLHYISD-AGNHASM-IQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVS 173 (514)
Q Consensus 96 ~~~~~gd~v~~~-~~~h~~~-~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (514)
.. +||.|++. +++|.+. ...++..|.+++.++..+
T Consensus 77 ~~--~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~----------------------------------------- 113 (366)
T 1m32_A 77 LG--PQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGE----------------------------------------- 113 (366)
T ss_dssp CC--TTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCT-----------------------------------------
T ss_pred cC--CCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCC-----------------------------------------
Confidence 65 89987654 5778764 344444555554332210
Q ss_pred hhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHh
Q psy16848 174 HQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLE 253 (514)
Q Consensus 174 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~ 253 (514)
. ...|.+.+++.++
T Consensus 114 ----------------------~--------------------------------------------~~~d~~~l~~~l~ 127 (366)
T 1m32_A 114 ----------------------V--------------------------------------------ARPDVQAIDAILN 127 (366)
T ss_dssp ----------------------T--------------------------------------------SCCCHHHHHHHHH
T ss_pred ----------------------C--------------------------------------------CCCCHHHHHHHHh
Confidence 0 0125666677666
Q ss_pred hccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc-c
Q psy16848 254 NMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF-G 332 (514)
Q Consensus 254 ~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l-g 332 (514)
+. ++++++++++++||+|.++|+++|.++|++||+++|+|++|+++... + +.. ..++|++++|+||++ +
T Consensus 128 ~~--~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~-----~-~~~--~~~~di~~~s~~K~~~~ 197 (366)
T 1m32_A 128 AD--PTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIP-----M-DIA--ALHIDYLISSANKCIQG 197 (366)
T ss_dssp HC--TTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSC-----C-CTT--TTTCSEEEEESSSTTCC
T ss_pred cC--CCeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcC-----c-ccc--ccCccEEEecCcccccC
Confidence 42 24688999999999999999999999999999999999999865431 1 111 235899999999987 5
Q ss_pred CCC-eEEEecHHHHHHHHhhcCceE----------------eccCCcHHHHHHHHHHHHHhhhch-HHHHHHHHHHHHHH
Q psy16848 333 NIG-GYIVGTKNFIDTIRSYAAGFI----------------FTTSLPPTVLAGAREAIRILSSQE-GVELRAKHQDIVAY 394 (514)
Q Consensus 333 ~~G-G~l~~~~~~~~~l~~~~~~~~----------------~~~~~~~~~~~a~~~~l~~~~~~~-~~~~~~~~~~~~~~ 394 (514)
+.| |++++++++++.+......+. ...+.+...++++.++++.+...+ ++++++++++++++
T Consensus 198 ~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~ 277 (366)
T 1m32_A 198 VPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRS 277 (366)
T ss_dssp CSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred CCceEEEEECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHH
Confidence 567 999999988876654211110 013567788888888888765444 67889999999999
Q ss_pred HHHHHHhCCCccccC---CCc-EEEEEeCC--CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHH
Q psy16848 395 LRNELIQIGFPVEHT---PSH-IIPIKIGN--PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMID 468 (514)
Q Consensus 395 l~~~L~~~g~~~~~~---~~~-~~~i~l~~--~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id 468 (514)
+.+.|++.++.+..+ .++ ++++.+++ ..+..++.+.|. ++||.+.++..+ +.+++|++++..+++++++
T Consensus 278 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~~~----~~~~iRi~~~~~~~~~~i~ 352 (366)
T 1m32_A 278 LVAGMRALGFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLK-EQGFVIYPGKVS----QSDCFRIGNIGEVYAADIT 352 (366)
T ss_dssp HHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHH-HTTEECEECCCS----SSCEEEEECCSSCCHHHHH
T ss_pred HHHHHHHCCCeeccCchhcCceEEEEEcCccCCCCHHHHHHHHH-HCCEEEECCcCC----CCCEEEEecCCCCCHHHHH
Confidence 999999887776543 233 78888875 456788999996 889999987654 3579999999888999999
Q ss_pred HHHHHHHHHHHHc
Q psy16848 469 KFVTDLLAVWKSL 481 (514)
Q Consensus 469 ~~~~~l~~~l~~~ 481 (514)
+++++|+++++++
T Consensus 353 ~~~~~l~~~~~~~ 365 (366)
T 1m32_A 353 ALLTAIRTAMYWT 365 (366)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999886543
No 76
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.97 E-value=7e-29 Score=253.26 Aligned_cols=328 Identities=16% Similarity=0.141 Sum_probs=240.3
Q ss_pred ceeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC---cEEEEeccccccccchhh
Q psy16848 18 RVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE---AGLVFTSCYVANDSTLFT 94 (514)
Q Consensus 18 ~~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~i~~~sGt~a~~~~l~~ 94 (514)
+.+.|..+.. ..+|++.+++.+++.. . +.....+..+++++++++++|.+ .+++++|||+|+..++.+
T Consensus 34 ~~~l~~~~~~-~~~~~v~~a~~~~~~~---~-----~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~ 104 (393)
T 1vjo_A 34 SRLLLGPGPS-NAHPSVLQAMNVSPVG---H-----LDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIAN 104 (393)
T ss_dssp CCEECSSSCC-CCCHHHHHHHSSCCCC---T-----TSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHH
T ss_pred cceeccCCCC-CCCHHHHHHHhccccc---c-----cCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHh
Confidence 3455544322 2357777776664431 0 11113477889999999999875 356667788999999988
Q ss_pred ccccCCCceEEecCccchh--hhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848 95 LGKMIPGLHYISDAGNHAS--MIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV 172 (514)
Q Consensus 95 l~~~~~gd~v~~~~~~h~~--~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
+.. +||.|+++.+.|.+ ....++..|.+++.++.+. +
T Consensus 105 ~~~--~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~-------------------------------------- 143 (393)
T 1vjo_A 105 AVE--PGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPW-G-------------------------------------- 143 (393)
T ss_dssp HCC--TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-T--------------------------------------
T ss_pred ccC--CCCEEEEEcCChhHHHHHHHHHHcCCceEEEecCC-C--------------------------------------
Confidence 865 99999999999988 6666666666655443210 0
Q ss_pred hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848 173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL 252 (514)
Q Consensus 173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l 252 (514)
...|.+.+++.+
T Consensus 144 --------------------------------------------------------------------~~~d~~~l~~~l 155 (393)
T 1vjo_A 144 --------------------------------------------------------------------EVFSLEELRTAL 155 (393)
T ss_dssp --------------------------------------------------------------------CCCCHHHHHHHH
T ss_pred --------------------------------------------------------------------CCCCHHHHHHHH
Confidence 012556666666
Q ss_pred hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc
Q psy16848 253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG 332 (514)
Q Consensus 253 ~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg 332 (514)
++. ++++|++++++||+|.+.|+++|.++|+++|+++|+||+|++|.. . + ... ..++|++++|+||+++
T Consensus 156 ~~~---~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~---~--~-~~~--~~~~di~~~s~sK~l~ 224 (393)
T 1vjo_A 156 ETH---RPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGV---P--I-FLD--AWGVDLAYSCSQKGLG 224 (393)
T ss_dssp HHH---CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTS---C--C-CTT--TTTCSEEECCSSSTTC
T ss_pred hhC---CceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCc---C--C-ccc--ccCccEEEEcCccccc
Confidence 542 478999999999999999999999999999999999999995532 1 1 122 2378999999999986
Q ss_pred CCC--eEEEecHHHHHHHHhhc---Cce--------------Eecc-CCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q psy16848 333 NIG--GYIVGTKNFIDTIRSYA---AGF--------------IFTT-SLPPTVLAGAREAIRILSSQEGVELRAKHQDIV 392 (514)
Q Consensus 333 ~~G--G~l~~~~~~~~~l~~~~---~~~--------------~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 392 (514)
+++ |++++++++++.+.... ..+ .+.. +.+...++++.++++.+.+.+++++++++++++
T Consensus 225 ~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~ 304 (393)
T 1vjo_A 225 CSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNV 304 (393)
T ss_dssp SCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CCCceEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 644 99999999988875321 111 1122 567888888899998765556788999999999
Q ss_pred HHHHHHHHhCCCccccCCC----cEEEEEeCCCccHHHHHHHHHHhC-CeEEecccCCCCCCCCcEEEEEe-CCCCCHHH
Q psy16848 393 AYLRNELIQIGFPVEHTPS----HIIPIKIGNPALNTKICDMLLKEK-GHYVQPINYPTVPVGEEKIRLAP-TPFHTREM 466 (514)
Q Consensus 393 ~~l~~~L~~~g~~~~~~~~----~~~~i~l~~~~~~~~~~~~Ll~~~-GI~v~~~~~~~~~~~~~~iRl~~-~~~~t~e~ 466 (514)
+++.+.|++.|+++..+.+ .++.+.++...+..++.+.|. ++ ||.+.++..+. .++++|+++ +...++++
T Consensus 305 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~gi~v~~g~~~~---~~~~iRis~~~~~~~~~~ 380 (393)
T 1vjo_A 305 EYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGVDGKAVARRLL-NEHNIEVGGGLGEL---AGKVWRVGLMGFNSRKES 380 (393)
T ss_dssp HHHHHHHHHTTCCBSSCGGGBCSSEEEEECCTTCCHHHHHHHHH-HHHCEECEECCGGG---TTTEEEEECCGGGCSHHH
T ss_pred HHHHHHHHHcCCcccCCccccCCcEEEEEcCCCCCHHHHHHHHH-hhCCEEEecCcccc---CCCEEEEeCCccCChHHH
Confidence 9999999988887765543 467788765556788999996 66 99999887533 357999995 44567788
Q ss_pred HHHHHHHHHHHH
Q psy16848 467 IDKFVTDLLAVW 478 (514)
Q Consensus 467 id~~~~~l~~~l 478 (514)
+++++++|++++
T Consensus 381 i~~~~~~l~~~l 392 (393)
T 1vjo_A 381 VDQLIPALEQVL 392 (393)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
No 77
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.97 E-value=8.6e-28 Score=243.33 Aligned_cols=321 Identities=17% Similarity=0.133 Sum_probs=235.8
Q ss_pred eeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhH------cCC--CcEEEEeccccccc
Q psy16848 20 TCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKL------HQK--EAGLVFTSCYVAND 89 (514)
Q Consensus 20 ~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~------~~~--~~~i~~~sGt~a~~ 89 (514)
.+||.++.+ ..+|++.+++.+++++.+.....+ +.... .++++.++++ ++. +..+++++|++++.
T Consensus 32 ~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y----~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~ 106 (369)
T 3cq5_A 32 DIRLNTNENPYPPSEALVADLVATVDKIATELNRY----PERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQ 106 (369)
T ss_dssp SEECSSCCCCSCCCHHHHHHHHHHHHHHGGGTTSC----CCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred ceeccCCCCCCCCCHHHHHHHHHHHHhcccccccC----CCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHH
Confidence 388977665 247899999999998742211111 11111 3566666665 332 23454555567788
Q ss_pred cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848 90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL 169 (514)
Q Consensus 90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
.++.++.. +||.|+++.+.|.+....++..|.+++.++.++.
T Consensus 107 ~~~~~l~~--~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~------------------------------------ 148 (369)
T 3cq5_A 107 QLLQAFGG--PGRTALGFQPSYSMHPILAKGTHTEFIAVSRGAD------------------------------------ 148 (369)
T ss_dssp HHHHHHCS--TTCEEEEEESSCTHHHHHHHHTTCEEEEEECCTT------------------------------------
T ss_pred HHHHHhcC--CCCEEEEcCCChHHHHHHHHHcCCEEEEecCCcC------------------------------------
Confidence 88888865 9999999999999998888777777665543110
Q ss_pred hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848 170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT 249 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~ 249 (514)
. ..|.+.++
T Consensus 149 --------------------------~---------------------------------------------~~d~~~l~ 157 (369)
T 3cq5_A 149 --------------------------F---------------------------------------------RIDMDVAL 157 (369)
T ss_dssp --------------------------S---------------------------------------------SCCHHHHH
T ss_pred --------------------------C---------------------------------------------CCCHHHHH
Confidence 0 01455566
Q ss_pred HHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccC-ceEEEcCCc
Q psy16848 250 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHN-MDIISGTLG 328 (514)
Q Consensus 250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~-~di~~~S~s 328 (514)
+.+++. +++++++++++||||.++|++++.++|+.+++++|+||+|+.+..+ .+...... ..+ .+++++|+|
T Consensus 158 ~~i~~~---~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~---~~~~~~~~-~~~~~~i~~~s~s 230 (369)
T 3cq5_A 158 EEIRAK---QPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPS---PSATTLLE-KYPTKLVVSRTMS 230 (369)
T ss_dssp HHHHHH---CCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCS---CCGGGGTT-TCTTTEEEEEESS
T ss_pred HHhhcc---CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCC---cchHHHHh-hCCCCEEEEEech
Confidence 665531 4688899999999999999999999999999999999999955432 11222211 124 679999999
Q ss_pred ccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCc
Q psy16848 329 KAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFP 405 (514)
Q Consensus 329 K~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 405 (514)
|++|.+| |++++++++++.+......+ +.++..++++.++++. .+++++.+++++++++++.+.|++.|+.
T Consensus 231 K~~~~~G~r~G~~~~~~~~~~~l~~~~~~~----~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 304 (369)
T 3cq5_A 231 KAFDFAGGRLGYFVANPAFIDAVMLVRLPY----HLSALSQAAAIVALRH--SADTLGTVEKLSVERVRVAARLEELGYA 304 (369)
T ss_dssp STTSCGGGCCEEEEECTHHHHHHHTTSCTT----CSCHHHHHHHHHHHHT--HHHHHTHHHHHHHHHHHHHHHHHHHTCE
T ss_pred HhcCCcccceEEEEeCHHHHHHHHHcCCCC----CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 9998657 99999999998887655443 5788888888888874 2456778889999999999999887887
Q ss_pred cccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848 406 VEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK 479 (514)
Q Consensus 406 ~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~ 479 (514)
+.++.++++++.++ .+..++.+.|. ++||.+.++. .++++|++++ +++|+++++++|+++++
T Consensus 305 ~~~~~~~~~~~~~~--~~~~~l~~~l~-~~gi~v~~~~------~~~~iRis~~---~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 305 VVPSESNFVFFGDF--SDQHAAWQAFL-DRGVLIRDVG------IAGHLRTTIG---VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp EECCSSSEEEEECC--SSHHHHHHHHH-HTTEECBCCS------CTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred ECCCCCeEEEEECC--CCHHHHHHHHH-HCCEEEEECC------CCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence 77667778888876 34678889995 9999998761 2468999998 79999999999998764
No 78
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.97 E-value=1.3e-28 Score=256.31 Aligned_cols=356 Identities=16% Similarity=0.115 Sum_probs=240.5
Q ss_pred cCCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC-cEEEEecccccc
Q psy16848 15 KSNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE-AGLVFTSCYVAN 88 (514)
Q Consensus 15 ~~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~i~~~sGt~a~ 88 (514)
.+|+.++||.++ .+++ ||++.+++.+++++..+ . ...+..+...+++++++++++.+ .++|++||++|+
T Consensus 46 ~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~-~----~~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~ 120 (452)
T 3n5m_A 46 IQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSY-F----PMSQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEAN 120 (452)
T ss_dssp TTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCC-C----CTTSEEHHHHHHHHHHHHHHTSCEEEEEESSHHHHH
T ss_pred CCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCC-c----ccccCCHHHHHHHHHHHHhCCCCceEEEeCchHHHH
Confidence 377889999765 6665 69999999999987543 1 12245688899999999998642 377788999999
Q ss_pred ccchhhcccc---C---CCceEEecCcc-chhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccC
Q psy16848 89 DSTLFTLGKM---I---PGLHYISDAGN-HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG 161 (514)
Q Consensus 89 ~~~l~~l~~~---~---~gd~v~~~~~~-h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 161 (514)
..++..+... . +++.|++.++. |.....+....+........ ....+.....
T Consensus 121 ~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~-------- 179 (452)
T 3n5m_A 121 ETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQY-------------EPFASGFLHV-------- 179 (452)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTT-------------CCCCSCEEEE--------
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhcccc-------------CCCCCCCeEe--------
Confidence 9999887521 2 56666655554 44444444433322110000 0000000000
Q ss_pred CccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec
Q psy16848 162 AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~ 241 (514)
+.+.. ..++
T Consensus 180 -----------------------------------------------------------~~~~~------------~~~~ 188 (452)
T 3n5m_A 180 -----------------------------------------------------------TPPDC------------YRMP 188 (452)
T ss_dssp -----------------------------------------------------------CCCCT------------TTST
T ss_pred -----------------------------------------------------------CCCcc------------ccCc
Confidence 00000 0011
Q ss_pred CCC---------hhHHHHHHhhccCCCceEEEEecC-CCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCC
Q psy16848 242 HND---------VNHLTQVLENMDVKIPKLVAFETV-HSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEH 306 (514)
Q Consensus 242 ~~d---------~~~l~~~l~~~~~~~~~~vv~~~~-~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~ 306 (514)
.+| ++.+++.+++...+++++|+++++ +| +|.+.+ +++|+++|++||++||+||+|+ +|..|..
T Consensus 189 ~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~ 267 (452)
T 3n5m_A 189 GIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKA 267 (452)
T ss_dssp TTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred cCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCccccc
Confidence 223 778888887333356889999999 99 998886 9999999999999999999999 6555432
Q ss_pred CCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHHHHHHHh---hcC-ceEeccCCcHHHHHHHHHHHHHhhh
Q psy16848 307 GAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNFIDTIRS---YAA-GFIFTTSLPPTVLAGAREAIRILSS 378 (514)
Q Consensus 307 ~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~~l~~---~~~-~~~~~~~~~~~~~~a~~~~l~~~~~ 378 (514)
+ ..+..+. .+|++ ||||++++ | |++++++++++.+.. ... ....+++.+++.++++.++++.+.+
T Consensus 268 ~--~~~~~~~--~~di~--t~sK~l~~-G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 340 (452)
T 3n5m_A 268 F--GFMNYDV--KPDII--TMAKGITS-AYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIEN 340 (452)
T ss_dssp S--GGGGTTC--CCSEE--EECGGGGT-TSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHH
T ss_pred c--hhhhcCC--CCCEE--eecccccC-CCcceEEEEECHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHh
Confidence 1 1233443 67888 78999987 6 999999999888753 111 1223557899999999999997754
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhC--CC---ccccCCCcEEEEEeCCC---------ccHHHHHHHHHHhCCeEEecccC
Q psy16848 379 QEGVELRAKHQDIVAYLRNELIQI--GF---PVEHTPSHIIPIKIGNP---------ALNTKICDMLLKEKGHYVQPINY 444 (514)
Q Consensus 379 ~~~~~~~~~~~~~~~~l~~~L~~~--g~---~~~~~~~~~~~i~l~~~---------~~~~~~~~~Ll~~~GI~v~~~~~ 444 (514)
+. ..++++++.+++++.|+++ ++ ....+.+.++.+.+... ....++++.|+ ++||.+.++..
T Consensus 341 ~~---~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~ 416 (452)
T 3n5m_A 341 EN---LIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACK-EKGLIIGRNGM 416 (452)
T ss_dssp TT---HHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCEEEEEEEETTTTEECCHHHHHHHHHHHH-HTTEECEECTT
T ss_pred cc---HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCCcccCCCCHHHHHHHHHHHH-HCCcEEeecCc
Confidence 44 5667777777777777654 22 23345677777766321 11357888886 89999998876
Q ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848 445 PTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS 480 (514)
Q Consensus 445 ~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~ 480 (514)
+. +...+++|++++..+|++++++++++|++++++
T Consensus 417 ~~-~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 417 TT-AGYNNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp SS-TTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred cc-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 43 445789999999999999999999999998764
No 79
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.97 E-value=3.2e-28 Score=248.19 Aligned_cols=335 Identities=12% Similarity=0.050 Sum_probs=240.2
Q ss_pred ceeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccchhhc
Q psy16848 18 RVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFTL 95 (514)
Q Consensus 18 ~~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~l 95 (514)
..+.|..+. ...+|++.+++.+++.. .. .....+...++++++++++|.+ ..++++|||+|+..++.++
T Consensus 9 ~~yl~~~~~-~~~~~~v~~a~~~~~~~----~~----~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~ 79 (392)
T 2z9v_A 9 PVITLTAGP-VNAYPEVLRGLGRTVLY----DY----DPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASL 79 (392)
T ss_dssp CSEECSSSC-CCCCHHHHHHTTSCCCC----TT----SHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHH
T ss_pred cceeecCCC-cCCCHHHHHHHhccccc----cc----cHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHh
Confidence 356666542 33467887777665432 11 1123456789999999999875 5666678888999999888
Q ss_pred cccCCCceEEecCccchhhh--hhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhh
Q psy16848 96 GKMIPGLHYISDAGNHASMI--QGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVS 173 (514)
Q Consensus 96 ~~~~~gd~v~~~~~~h~~~~--~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (514)
.. +||.|+++.++|.+.. ..++..|.+++.++.++
T Consensus 80 ~~--~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~----------------------------------------- 116 (392)
T 2z9v_A 80 IS--PDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPY----------------------------------------- 116 (392)
T ss_dssp CC--TTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCT-----------------------------------------
T ss_pred cC--CCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCC-----------------------------------------
Confidence 65 9999999999998752 12222344443332210
Q ss_pred hhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHh
Q psy16848 174 HQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLE 253 (514)
Q Consensus 174 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~ 253 (514)
.+ ..|.+.+++.++
T Consensus 117 ----------------------~~--------------------------------------------~~d~~~l~~~l~ 130 (392)
T 2z9v_A 117 ----------------------NE--------------------------------------------AIDPQAVADMLK 130 (392)
T ss_dssp ----------------------TS--------------------------------------------CCCHHHHHHHHH
T ss_pred ----------------------CC--------------------------------------------CCCHHHHHHHHh
Confidence 00 125666666665
Q ss_pred hccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc-c
Q psy16848 254 NMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF-G 332 (514)
Q Consensus 254 ~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l-g 332 (514)
+ ++++++|++++++||||.++|+++|.++|++||+++|+|++|+++... + +.. ..++|++++|+||++ +
T Consensus 131 ~--~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~-----~-~~~--~~~~d~~~~s~sK~~~~ 200 (392)
T 2z9v_A 131 A--HPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMK-----T-HPE--DCKADIYVTGPNKCLGA 200 (392)
T ss_dssp H--CTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBS-----C-CGG--GGTCSEEEECSSSTTCC
T ss_pred c--CCCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcc-----c-ccc--cccceEEEecCcccccC
Confidence 4 245789999999999999999999999999999999999999865421 1 111 236799999999976 4
Q ss_pred CCC-eEEEecHHHHHHHHhhc------------------CceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q psy16848 333 NIG-GYIVGTKNFIDTIRSYA------------------AGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVA 393 (514)
Q Consensus 333 ~~G-G~l~~~~~~~~~l~~~~------------------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 393 (514)
+.| |++++++++++.++... .......+.+...++++.++++.+.+.++++++++++++++
T Consensus 201 ~~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~ 280 (392)
T 2z9v_A 201 PPGLTMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAK 280 (392)
T ss_dssp CSCCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCceeEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 456 99999999988886421 00111234566777777788887654457788999999999
Q ss_pred HHHHHHHhCCCcccc-C----CCcEEEEEeCCCccHHHHHHHHHHhC-CeEEecccCCCCCCCCcEEEEEeCC-CCCHHH
Q psy16848 394 YLRNELIQIGFPVEH-T----PSHIIPIKIGNPALNTKICDMLLKEK-GHYVQPINYPTVPVGEEKIRLAPTP-FHTREM 466 (514)
Q Consensus 394 ~l~~~L~~~g~~~~~-~----~~~~~~i~l~~~~~~~~~~~~Ll~~~-GI~v~~~~~~~~~~~~~~iRl~~~~-~~t~e~ 466 (514)
++.+.|+++|+.+.. + .+.++++.+++..+..++.+.|. ++ ||.+.++..+ ...+++|+++.. .+++++
T Consensus 281 ~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~gi~v~~g~~~---~~~~~lRi~~~~~~~~~~~ 356 (392)
T 2z9v_A 281 AMRAGVTAMGLSVWAASDSIASPTTTAVRTPDGVDEKALRQAAR-ARYGVVFSSGRGE---TLGKLTRIGHMGPTAQPIY 356 (392)
T ss_dssp HHHHHHHHTTCCBSSSSGGGBCTTEEEEECCTTCCHHHHHHHHH-HHHCEECEECCGG---GTTTEEEEECCGGGCSHHH
T ss_pred HHHHHHHHcCCeeccCCccccCCceEEEECCCCCCHHHHHHHHH-hcCCEEEecCCCC---CCCCeEEEeCcccccCHHH
Confidence 999999988777655 3 25577888875556788999996 66 9999887642 235799999633 689999
Q ss_pred HHHHHHHHHHHHHHcCCc
Q psy16848 467 IDKFVTDLLAVWKSLDLP 484 (514)
Q Consensus 467 id~~~~~l~~~l~~~~~~ 484 (514)
+++++++|++++++++..
T Consensus 357 i~~~~~~l~~~~~~~~~~ 374 (392)
T 2z9v_A 357 AIAALTALGGAMNAAGRK 374 (392)
T ss_dssp HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 999999999999988653
No 80
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.97 E-value=2.4e-28 Score=251.00 Aligned_cols=303 Identities=17% Similarity=0.152 Sum_probs=227.8
Q ss_pred chHHHHHHHHHHhHcCCCc--EE-EEeccccccccchhhccccCCCceEEecCccchh--hhhhhhcCCCCeeeccCCCh
Q psy16848 59 SLFHEKLEEDVAKLHQKEA--GL-VFTSCYVANDSTLFTLGKMIPGLHYISDAGNHAS--MIQGIRNSSAPKIIYRHNDV 133 (514)
Q Consensus 59 ~~~~~~~~~~la~~~~~~~--~i-~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~--~~~~~~~~~~~~~~~~~~d~ 133 (514)
.+..+++++++++++|.+. .+ +++|||+|+..++.++.. +||.|+++.+.|.+ ....++..|.+++.++.+..
T Consensus 43 ~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 120 (416)
T 3isl_A 43 TGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIE--PEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWG 120 (416)
T ss_dssp HHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHCC--TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhcC--CCCEEEEecCCcccHHHHHHHHhcCCeeEEEecCCC
Confidence 5678899999999999764 33 456778999999988865 99999999999987 44455555665554433100
Q ss_pred HHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHh
Q psy16848 134 NHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG 213 (514)
Q Consensus 134 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~ 213 (514)
+
T Consensus 121 ---------------------------------------------------------------~---------------- 121 (416)
T 3isl_A 121 ---------------------------------------------------------------T---------------- 121 (416)
T ss_dssp ---------------------------------------------------------------C----------------
T ss_pred ---------------------------------------------------------------C----------------
Confidence 0
Q ss_pred hccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEE
Q psy16848 214 TLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTF 293 (514)
Q Consensus 214 ~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li 293 (514)
..|.+.+++.+++ +++++|++++++||+|.+.|+++|.++|++||+++|
T Consensus 122 ----------------------------~~d~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li 170 (416)
T 3isl_A 122 ----------------------------VFDPEDIIREIKK---VKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFI 170 (416)
T ss_dssp ----------------------------CCCHHHHHHHHHH---HCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEE
T ss_pred ----------------------------CCCHHHHHHHHhh---CCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEE
Confidence 0155666666653 247899999999999999999999999999999999
Q ss_pred EeccccccccCCCCCCccccCCCccCceEEEcCCcccc-cCCC-eEEEecHHHHHHHHhhc-------------------
Q psy16848 294 VDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF-GNIG-GYIVGTKNFIDTIRSYA------------------- 352 (514)
Q Consensus 294 ~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l-g~~G-G~l~~~~~~~~~l~~~~------------------- 352 (514)
+|++|+.+... + +.. ..++|++++|+||++ ++.| |+++.++++++.+....
T Consensus 171 ~D~a~~~~~~~-----~-~~~--~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~ 242 (416)
T 3isl_A 171 VDAVATIGGCE-----V-KVD--EWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNR 242 (416)
T ss_dssp EECTTTTTTSC-----C-CTT--TTTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC------------------CC
T ss_pred EECCccccCCC-----c-chh--hcCCCEEEecCccccCCCCCeEEEEECHHHHHHhhccccccccccccccchhccCCC
Confidence 99999865431 0 111 236899999999985 5556 99999999988887432
Q ss_pred ----------------CceE-eccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCC----C
Q psy16848 353 ----------------AGFI-FTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTP----S 411 (514)
Q Consensus 353 ----------------~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~ 411 (514)
.... ...+.+...+.++.++++.....++++++++++++++++.+.|++.|+.+..+. +
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 322 (416)
T 3isl_A 243 PITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMGLRLFGDDSCKMP 322 (416)
T ss_dssp CCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCT
T ss_pred CCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeccCccccCC
Confidence 0111 122456777778888888775555788999999999999999999888776553 4
Q ss_pred cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHH-HHHHHHHHHHHHHHcCCc
Q psy16848 412 HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREM-IDKFVTDLLAVWKSLDLP 484 (514)
Q Consensus 412 ~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~-id~~~~~l~~~l~~~~~~ 484 (514)
.++.+.+++..+..++.+.|+++.||.++++.. +..++++|++++...+++| +++++++|++++++++..
T Consensus 323 ~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~---~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~~~~ 393 (416)
T 3isl_A 323 VVTCVEIPGGIDGESVRDMLLAQFGIEIASSFG---PLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHNAG 393 (416)
T ss_dssp TEEEEECCTTCCHHHHHHHHHHHHCEECBCCCS---TTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred cEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCC---CCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 577888876567889999996334999997763 2346799999966666666 999999999999988643
No 81
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.97 E-value=1.4e-28 Score=246.96 Aligned_cols=317 Identities=10% Similarity=0.018 Sum_probs=230.4
Q ss_pred CCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccchhhccccCCCceE
Q psy16848 27 QYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFTLGKMIPGLHY 104 (514)
Q Consensus 27 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~l~~~~~gd~v 104 (514)
.+..+|++.+++.+++.. . ......+...++++++++++|.+ ..++++|||+|+..++.++.. +||.|
T Consensus 9 p~~~~~~v~~a~~~~~~~----~----~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~--~gd~v 78 (352)
T 1iug_A 9 PVRLHPKALEALARPQLH----H----RTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFA--PGERV 78 (352)
T ss_dssp SCCCCHHHHHHHHSCCCC----T----TSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCC--TTCEE
T ss_pred CCCCCHHHHHHhccCCCC----c----cCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhccC--CCCeE
Confidence 334478888877765531 1 11122456789999999999976 456667889999999988865 99999
Q ss_pred EecCccchhhh--hhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEe
Q psy16848 105 ISDAGNHASMI--QGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFV 182 (514)
Q Consensus 105 ~~~~~~h~~~~--~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (514)
+++.+.|.+.. ..++..|.+++.++.++ +
T Consensus 79 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~------------------------------------------------ 109 (352)
T 1iug_A 79 LVPVYGKFSERFYEIALEAGLVVERLDYPY-G------------------------------------------------ 109 (352)
T ss_dssp EEEECSHHHHHHHHHHHHTTCEEEEEECCT-T------------------------------------------------
T ss_pred EEEeCCchhHHHHHHHHHcCCceEEEeCCC-C------------------------------------------------
Confidence 99999998864 22233455444333210 0
Q ss_pred eccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceE
Q psy16848 183 DEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKL 262 (514)
Q Consensus 183 ~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~ 262 (514)
+ ..|.+.+++ +++++
T Consensus 110 --------------~--------------------------------------------~~d~~~l~~-------~~~~~ 124 (352)
T 1iug_A 110 --------------D--------------------------------------------TPRPEDVAK-------EGYAG 124 (352)
T ss_dssp --------------C--------------------------------------------CCCTTTSCC-------SSCSE
T ss_pred --------------C--------------------------------------------CCCHHHHhc-------cCCcE
Confidence 0 002222211 45789
Q ss_pred EEEecCCCCCccccCHHHHHHHHHHc--CCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc-cCCC-eEE
Q psy16848 263 VAFETVHSMTGAICPLKELCEVSHQH--GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF-GNIG-GYI 338 (514)
Q Consensus 263 vv~~~~~nptG~~~~l~~l~~l~~~~--gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l-g~~G-G~l 338 (514)
|++++++||||.+.|+++|.++|++| |+++|+|++|+++... + +.. ..++|++++|+||++ ++.| |++
T Consensus 125 v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~-----~-~~~--~~~~d~~~~s~~K~~~~~~g~G~~ 196 (352)
T 1iug_A 125 LLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGE-----V-ALE--AMGVDAAASGSQKGLMCPPGLGFV 196 (352)
T ss_dssp EEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBC-----C-CSG--GGTCSEEEEESSSTTCCCSCEEEE
T ss_pred EEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccCcc-----e-ecc--ccCeeEEEecCcccccCCCceeEE
Confidence 99999999999999999999999999 9999999999865421 1 111 235799999999965 5557 999
Q ss_pred EecHHHHHH---------HH----hhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCc
Q psy16848 339 VGTKNFIDT---------IR----SYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFP 405 (514)
Q Consensus 339 ~~~~~~~~~---------l~----~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 405 (514)
++++++++. +. ...... +..+.+...+.++.++++.+.+. +++++++++++++++.+.|++.|+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~ 274 (352)
T 1iug_A 197 ALSPRALERLKPRGYYLDLARELKAQKEGE-SAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEGGLR 274 (352)
T ss_dssp EECHHHHHTCCCCSSTTCHHHHHHHHTTTC-CSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred EECHHHHHHhhCCCceeeHHHHHhhcccCC-CCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 999887654 21 111111 13356777788888888876444 7889999999999999999988877
Q ss_pred cccC--CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 406 VEHT--PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 406 ~~~~--~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
+..+ .+.++++.+++..+..++.+.|. ++||.+.++..+ ...+++|++++..++++++++++++|+++++++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~~~---~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 275 PVPKRFSPAVAAFYLPEGVPYARVKEAFA-QRGAVIAGGQGP---LKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp ESCSSBCTTCEEEECCTTCCHHHHHHHHH-TTTEECEECCGG---GTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCeEEEEEcCCCCCHHHHHHHHH-HCCEEEEeCCCc---cCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 7655 45688888875556788999996 889999987632 235799999998889999999999999998876
No 82
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.97 E-value=1.4e-28 Score=248.51 Aligned_cols=327 Identities=13% Similarity=0.039 Sum_probs=238.4
Q ss_pred CCceeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccc
Q psy16848 16 SNRVTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDST 91 (514)
Q Consensus 16 ~g~~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~ 91 (514)
+|+.++||.++.. ..+|++.+++.+++... .. ++. ....++++.++++++.+ ..+++++|++++..+
T Consensus 22 ~~~~~idl~~~~~~~~~~~~v~~a~~~~~~~~-~~-------y~~-~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~ 92 (364)
T 1lc5_A 22 SPDQLLDFSANINPLGMPVSVKRALIDNLDCI-ER-------YPD-ADYFHLHQALARHHQVPASWILAGNGETESIFTV 92 (364)
T ss_dssp CGGGSEECSSCCCTTCCCHHHHHHHHHTGGGG-GS-------CCC-TTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHH
T ss_pred CccceEEeccccCCCCCCHHHHHHHHHHHHHh-hc-------CCC-CCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHH
Confidence 5677899976542 24788999988877541 11 111 22578899999999864 456566677888888
Q ss_pred hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848 92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE 171 (514)
Q Consensus 92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
+.++ +||.|+++.+.|.+....++..|.+++.++.+..
T Consensus 93 ~~~~----~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~-------------------------------------- 130 (364)
T 1lc5_A 93 ASGL----KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREA-------------------------------------- 130 (364)
T ss_dssp HHHH----CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGG--------------------------------------
T ss_pred HHHc----CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcc--------------------------------------
Confidence 8776 5699999999999988887777777665544210
Q ss_pred hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848 172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV 251 (514)
Q Consensus 172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~ 251 (514)
++++.+++.
T Consensus 131 -----------------------------------------------------------------------~~~~~l~~~ 139 (364)
T 1lc5_A 131 -----------------------------------------------------------------------DGWQLTDAI 139 (364)
T ss_dssp -----------------------------------------------------------------------GTTCCCTTH
T ss_pred -----------------------------------------------------------------------cccchhHHH
Confidence 011101112
Q ss_pred HhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc
Q psy16848 252 LENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG 328 (514)
Q Consensus 252 l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s 328 (514)
+++ .+++++++++++|+||||.++| +++|.++|++||+++|+||+|+.+..+ +.+..+... ..+.+++++|+|
T Consensus 140 ~~~-~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--~~~~~~~~~-~~~~~i~~~s~s 215 (364)
T 1lc5_A 140 LEA-LTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPH--ETGFIPALK-DNPHIWVLRSLT 215 (364)
T ss_dssp HHH-CCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTT--CCCSGGGCT-TCTTEEEEEEST
T ss_pred HHh-ccCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccC--ccchhhHhc-cCCCEEEEEECc
Confidence 222 2355788999999999999999 899999999999999999999954432 212222212 236789999999
Q ss_pred ccccCCC---eEEE-ecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-C
Q psy16848 329 KAFGNIG---GYIV-GTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-G 403 (514)
Q Consensus 329 K~lg~~G---G~l~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g 403 (514)
|++|.+| ||++ +++++++.+...... .+.+++.+.++.++++. ..++++.+++++++++++.+.|+++ +
T Consensus 216 K~~~~~G~r~G~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~ 289 (364)
T 1lc5_A 216 KFYAIPGLRLGYLVNSDDAAMARMRRQQMP----WSVNALAALAGEVALQD--SAWQQATWHWLREEGARFYQALCQLPL 289 (364)
T ss_dssp TTTTCTTTCCEEEECCCHHHHHHHHHHSCT----TCSCHHHHHHHHHGGGC--HHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred hhhcCCccceEEEEECCHHHHHHHHHhCCC----CCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9998656 9999 999999888776543 36788888888887764 3467788889999999999999987 7
Q ss_pred CccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 404 FPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 404 ~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
+.+.++.+.++++.+++. ..++.+.|. ++||.+.++..+. ..+.+++|++++ +++++++++++|+++++++
T Consensus 290 ~~~~~~~g~~~~~~~~~~--~~~l~~~l~-~~gi~v~~g~~~~-~~~~~~iRis~~---~~~~~~~l~~~l~~~~~~~ 360 (364)
T 1lc5_A 290 LTVYPGRANYLLLRCERE--DIDLQRRLL-TQRILIRSCANYP-GLDSRYYRVAIR---SAAQNERLLAALRNVLTGI 360 (364)
T ss_dssp EEECCCSSSEEEEEESCT--TCCHHHHHH-TTTEECEECTTST-TCCTTEEEEECC---CHHHHHHHHHHHHHHC---
T ss_pred CEECCCCCeEEEEECCCc--HHHHHHHHH-HCCcEEeeCcccC-CCCCCEEEEEeC---CHHHHHHHHHHHHHHhhcc
Confidence 777666777888887642 457888886 8899999987643 234679999987 6899999999999987664
No 83
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.97 E-value=5e-29 Score=256.88 Aligned_cols=342 Identities=17% Similarity=0.153 Sum_probs=242.7
Q ss_pred CCceeeecccCCCCCChhHHHHHHHHHH--H-hCCCCC-CcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccc
Q psy16848 16 SNRVTCRLSSVQYKVPKGGRKCLGEALE--K-FGTGAG-GTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVAND 89 (514)
Q Consensus 16 ~g~~~~d~~~~~~~~~~~~~~a~~~~~~--~-~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~ 89 (514)
++..++|+.+.. ..+|++.+++.+++. . ++.... .+...++..+..++++++++++++.+ .+++++||++|+.
T Consensus 21 ~~~iyld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~ 99 (423)
T 3lvm_A 21 KLPIYLDYSATT-PVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDN 99 (423)
T ss_dssp CSSEECBTTTCC-CCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHH
T ss_pred CCCEeecCCCcC-CCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHH
Confidence 344567776554 447899999988877 2 332221 22222334577789999999999876 6788888899999
Q ss_pred cchhhccc--cCCCceEEecCccchhhhhhhhc---CCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCcc
Q psy16848 90 STLFTLGK--MIPGLHYISDAGNHASMIQGIRN---SSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC 164 (514)
Q Consensus 90 ~~l~~l~~--~~~gd~v~~~~~~h~~~~~~~~~---~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
.++.++.. .++||.|+++.++|.+...++.. .|.+++.++.+.
T Consensus 100 ~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-------------------------------- 147 (423)
T 3lvm_A 100 LAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR-------------------------------- 147 (423)
T ss_dssp HHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT--------------------------------
T ss_pred HHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCC--------------------------------
Confidence 99887752 23799999999999998765532 244444332210
Q ss_pred chhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCC
Q psy16848 165 PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHND 244 (514)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d 244 (514)
.+ ..|
T Consensus 148 -------------------------------~~--------------------------------------------~~d 152 (423)
T 3lvm_A 148 -------------------------------NG--------------------------------------------IID 152 (423)
T ss_dssp -------------------------------TS--------------------------------------------CCC
T ss_pred -------------------------------CC--------------------------------------------ccC
Confidence 00 014
Q ss_pred hhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEE
Q psy16848 245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS 324 (514)
Q Consensus 245 ~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~ 324 (514)
.+.+++.+ +++++++++++++||+|.++|+++|.++|++||+++|+||+|+.+... .... ..++|+++
T Consensus 153 ~~~l~~~i----~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~------~~~~--~~~~di~~ 220 (423)
T 3lvm_A 153 LKELEAAM----RDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLP------IDLS--QLKVDLMS 220 (423)
T ss_dssp HHHHHHHC----CTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSC------CCTT--TSCCSEEE
T ss_pred HHHHHHhc----CCCcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCC------cChh--hcCCCEEE
Confidence 44444444 346899999999999999999999999999999999999999865431 1112 23689999
Q ss_pred cCCcccccCCC-eEEEecHHHHHHHHhhcCce-----EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q psy16848 325 GTLGKAFGNIG-GYIVGTKNFIDTIRSYAAGF-----IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNE 398 (514)
Q Consensus 325 ~S~sK~lg~~G-G~l~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 398 (514)
+|+||.+|+.| |+++++++..+.+.....+. ....+.+...++++.++++.+.. .+++++++++++++++.+.
T Consensus 221 ~s~sK~~g~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~l~~~ 299 (423)
T 3lvm_A 221 FSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKE-EMATEMERLRGLRNRLWNG 299 (423)
T ss_dssp EESTTTTSCSSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred echHHhcCCCCeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 99999888876 99998877665554432210 01234567777777788876643 3778999999999999999
Q ss_pred HHhC-CCccccCCC----cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCC----------------CCcEEEEE
Q psy16848 399 LIQI-GFPVEHTPS----HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV----------------GEEKIRLA 457 (514)
Q Consensus 399 L~~~-g~~~~~~~~----~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~----------------~~~~iRl~ 457 (514)
|+++ ++.+..+.+ .++.+.++. .+..++.+.|. + |.+.++..|.... ..+++|++
T Consensus 300 L~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~-~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~ 375 (423)
T 3lvm_A 300 IKDIEEVYLNGDLEHGAPNILNVSFNY-VEGESLIMALK-D--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFS 375 (423)
T ss_dssp HTTSTTEEEESCSTTBCTTEEEEEETT-SCHHHHHHHTT-T--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEE
T ss_pred HhcCCCEEEeCCccccCCCeEEEEeCC-CCHHHHHHHHh-h--heeccCccccCCCccccHHHHHhCCCccccCceEEEE
Confidence 9888 777665443 467777743 45678888874 5 8888776543210 13799999
Q ss_pred eCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848 458 PTPFHTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 458 ~~~~~t~e~id~~~~~l~~~l~~~~ 482 (514)
++..++++++++++++|++++++++
T Consensus 376 ~~~~~t~e~i~~~~~~l~~~~~~~~ 400 (423)
T 3lvm_A 376 LGRFTTEEEIDYTIELVRKSIGRLR 400 (423)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998764
No 84
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.96 E-value=3.1e-28 Score=253.96 Aligned_cols=343 Identities=15% Similarity=0.106 Sum_probs=236.5
Q ss_pred CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccccc
Q psy16848 16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVAN 88 (514)
Q Consensus 16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~ 88 (514)
+|+.++||.++ ..++ ||++.+++.+++++..+.++ ...+..+...+++++++++++ .++++|++||++|+
T Consensus 48 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~---~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~ 124 (459)
T 4a6r_A 48 EGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNT---FFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESV 124 (459)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCT---TSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHH
T ss_pred CCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhcccccc---ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHH
Confidence 67888898654 4454 79999999999998553222 223456888999999999984 56788889999999
Q ss_pred ccchhhcccc------CCCceEEec-CccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccC
Q psy16848 89 DSTLFTLGKM------IPGLHYISD-AGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG 161 (514)
Q Consensus 89 ~~~l~~l~~~------~~gd~v~~~-~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 161 (514)
..++..+... .+++.|++. +.+|.....+....+.......
T Consensus 125 ~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~-------------------------------- 172 (459)
T 4a6r_A 125 DTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQ-------------------------------- 172 (459)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC----------------------------------
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccc--------------------------------
Confidence 9999887531 145655554 4445444444443332211000
Q ss_pred CccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec
Q psy16848 162 AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~ 241 (514)
+......+..++
T Consensus 173 --------------------------------------------------------------------~~~~~~~~~~~~ 184 (459)
T 4a6r_A 173 --------------------------------------------------------------------GDLPIPGMAHIE 184 (459)
T ss_dssp ---------------------------------------------------------------------CCSCSSEEEEC
T ss_pred --------------------------------------------------------------------cCCCCCCCEEeC
Confidence 000000111111
Q ss_pred --C----C---C--------hhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-
Q psy16848 242 --H----N---D--------VNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA- 299 (514)
Q Consensus 242 --~----~---d--------~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~- 299 (514)
. + | .+.+++.+.+...+++++|++++++|++|.+.+ +++|+++|++||+++|+||+|+
T Consensus 185 ~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g 264 (459)
T 4a6r_A 185 QPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICG 264 (459)
T ss_dssp CCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred CCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence 1 1 1 567777776543356789999999999999876 9999999999999999999998
Q ss_pred ccccCCCCCCccccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHh---hcCceEeccCCcHHHHHHHHHHH
Q psy16848 300 VGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRS---YAAGFIFTTSLPPTVLAGAREAI 373 (514)
Q Consensus 300 ~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~a~~~~l 373 (514)
+|..|..+ ..+..+. .+|++ +|||++++.| |++++++++++.+.. ..... +++.+++.++++.++|
T Consensus 265 ~gr~G~~~--~~~~~~~--~pdi~--t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~--t~~~~~~~~aaa~aal 336 (459)
T 4a6r_A 265 FGRTGEWF--GHQHFGF--QPDLF--TAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGF--TYSGHPVCAAVAHANV 336 (459)
T ss_dssp TTTTSSSS--HHHHHTC--CCSEE--EECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHH--HHCSCHHHHHHHHHHH
T ss_pred CCcccccc--hHhhcCC--CCCee--ehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCC--CCCCCHHHHHHHHHHH
Confidence 55554321 1223333 67888 7889998744 999999999998873 22222 4578999999999999
Q ss_pred HHhhhchHHHHHHHHH-HHHHHHHHHH-HhC----CCccccCCCcEEEEEeCCCc-----------cHHHHHHHHHHhCC
Q psy16848 374 RILSSQEGVELRAKHQ-DIVAYLRNEL-IQI----GFPVEHTPSHIIPIKIGNPA-----------LNTKICDMLLKEKG 436 (514)
Q Consensus 374 ~~~~~~~~~~~~~~~~-~~~~~l~~~L-~~~----g~~~~~~~~~~~~i~l~~~~-----------~~~~~~~~Ll~~~G 436 (514)
+.+.++. ..++++ ++.+++++.| +.+ .+....+.+.++.+.+.... ...++++.|+ ++|
T Consensus 337 ~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G 412 (459)
T 4a6r_A 337 AALRDEG---IVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFF-RNN 412 (459)
T ss_dssp HHHHHTC---HHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHH-HTT
T ss_pred HHHhcch---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCccccccccchHHHHHHHHHHHH-HCC
Confidence 9775444 555565 6666666666 332 23334556778888775421 1567888886 889
Q ss_pred eEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 437 HYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 437 I~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
|.+.++. +++|++++..+|++++++++++|+++++++
T Consensus 413 v~v~~~g--------~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 449 (459)
T 4a6r_A 413 LIMRACG--------DHIVSAPPLVMTRAEVDEMLAVAERCLEEF 449 (459)
T ss_dssp EECEEET--------TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eEEecCC--------CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9998642 589999999999999999999999998765
No 85
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.96 E-value=1.6e-28 Score=251.23 Aligned_cols=337 Identities=12% Similarity=0.107 Sum_probs=236.7
Q ss_pred CceeeecccCCC--CCChhHHHHHHHHHHHhCCC-CCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccccccc
Q psy16848 17 NRVTCRLSSVQY--KVPKGGRKCLGEALEKFGTG-AGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVAND 89 (514)
Q Consensus 17 g~~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a~~ 89 (514)
++.++||.++.. ..+|.+.+++.+++++.+.. ...+....|..++.+++++++.+.+| .+..+++++|++|+.
T Consensus 34 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~ 113 (398)
T 3ele_A 34 KENVYDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLS 113 (398)
T ss_dssp GGGCEECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHH
T ss_pred CCCeEEeecCCCCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHH
Confidence 467899976533 24789999999999863210 11122233556677777777776655 245666677788999
Q ss_pred cchhhccccCCC-ceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848 90 STLFTLGKMIPG-LHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE 168 (514)
Q Consensus 90 ~~l~~l~~~~~g-d~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
.++.++.. +| |.|+++.+.|.+....++..|.+++.++.++ +
T Consensus 114 ~~~~~l~~--~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~---------------------------------- 156 (398)
T 3ele_A 114 ICFRALTS--DAYDEFITIAPYFPEYKVFVNAAGARLVEVPADT-E---------------------------------- 156 (398)
T ss_dssp HHHHHHCC--STTCEEEEESSCCTHHHHHHHHTTCEEEEECCCT-T----------------------------------
T ss_pred HHHHHHcC--CCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCC-c----------------------------------
Confidence 99988866 99 9999999999998887777777766554320 0
Q ss_pred HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848 169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL 248 (514)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l 248 (514)
+. .-|.+.+
T Consensus 157 --------------------------~~---------------------------------------------~~d~~~l 165 (398)
T 3ele_A 157 --------------------------HF---------------------------------------------QIDFDAL 165 (398)
T ss_dssp --------------------------TS---------------------------------------------SCCHHHH
T ss_pred --------------------------CC---------------------------------------------cCCHHHH
Confidence 00 0033333
Q ss_pred HHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHH------cCCEEEEeccccccccCCCCCCccccCCCccC
Q psy16848 249 TQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQ------HGALTFVDEVHAVGLYGEHGAGIGERDGQLHN 319 (514)
Q Consensus 249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~------~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~ 319 (514)
++.+ .++++++++++|+||||.+++ +++|.++|++ ||+++|+||+|+.+..+....+. ... ..+
T Consensus 166 ~~~l----~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~--~~~-~~~ 238 (398)
T 3ele_A 166 EERI----NAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPF--VTK-YYD 238 (398)
T ss_dssp HHTC----CTTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCC--GGG-TCS
T ss_pred HHHh----CcCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCC--hHh-hcC
Confidence 3333 456899999999999999999 7888899999 99999999999954432211111 111 235
Q ss_pred ceEEEcCCcccccCCC---eEEEecHHHH------HHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q psy16848 320 MDIISGTLGKAFGNIG---GYIVGTKNFI------DTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQD 390 (514)
Q Consensus 320 ~di~~~S~sK~lg~~G---G~l~~~~~~~------~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 390 (514)
.+++++|+||.+|.+| ||++++++++ +.+....... ...+.+...+.++...++. .. .++++++
T Consensus 239 ~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~---~~---~~~~~~~ 311 (398)
T 3ele_A 239 NTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRAL-GYVCAPSLFQKMIVKCQGA---TG---DINAYKE 311 (398)
T ss_dssp SEEEEEESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHT-TCCCSCHHHHHHHTTCTTC---CC---CHHHHHH
T ss_pred CeEEEEehhhcCCCccceeEEEEEcchhhhHHHHHHHHHHHhhhc-cccCCCHHHHHHHHHHhcC---HH---HHHHHHH
Confidence 7899999999998657 9999987643 3332221111 0224566666666655542 22 4677888
Q ss_pred HHHHHHHHHHhCCCccccCCCcE-EEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHH
Q psy16848 391 IVAYLRNELIQIGFPVEHTPSHI-IPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDK 469 (514)
Q Consensus 391 ~~~~l~~~L~~~g~~~~~~~~~~-~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~ 469 (514)
+++++.+.|+++++.+..+.+++ +++.++.. +..++.+.| .++||.+.++..|.. ++++|++++ ++++++++
T Consensus 312 ~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~l-~~~gi~v~~g~~~~~---~~~iRis~~--~~~e~i~~ 384 (398)
T 3ele_A 312 NRDLLYEGLTRIGYHCFKPDGAFYMFVKALED-DSNAFCEKA-KEEDVLIVAADGFGC---PGWVRISYC--VDREMIKH 384 (398)
T ss_dssp HHHHHHHHHHHHTCCEECCSBSSEEEEECSSS-CHHHHHHHH-HTTTEECEESGGGTC---TTEEEEECC--SCHHHHHH
T ss_pred HHHHHHHHHHHcCCeecCCCeeEEEEEEcCCC-CHHHHHHHH-HHCCEEEeCccccCC---CCeEEEEec--CCHHHHHH
Confidence 99999999998888877776664 77887653 577888888 499999999886543 469999997 69999999
Q ss_pred HHHHHHHHHHHcC
Q psy16848 470 FVTDLLAVWKSLD 482 (514)
Q Consensus 470 ~~~~l~~~l~~~~ 482 (514)
++++|++++++++
T Consensus 385 ~l~~l~~~l~~~~ 397 (398)
T 3ele_A 385 SMPAFEKIYKKYN 397 (398)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988753
No 86
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.96 E-value=1.6e-28 Score=254.33 Aligned_cols=369 Identities=14% Similarity=0.075 Sum_probs=239.8
Q ss_pred CCceeeecccCCC---C--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccccc
Q psy16848 16 SNRVTCRLSSVQY---K--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVAN 88 (514)
Q Consensus 16 ~g~~~~d~~~~~~---~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~ 88 (514)
+|++|+|+.+.-+ + +||++.+++.+|+++..... ..+....+...++.++|+++.. .++++|++|||+|+
T Consensus 65 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~---~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~ 141 (473)
T 4e3q_A 65 NGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYH---AFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEAN 141 (473)
T ss_dssp TCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCC---CCTTEEEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHH
T ss_pred CCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhccccc---ccccccCHHHHHHHHHHHhhCCCCccEEEEeCchHHHH
Confidence 5666666643222 2 37999999999999854321 1122235777889999999974 56789999999999
Q ss_pred ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848 89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE 168 (514)
Q Consensus 89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
+.|++..... .-.+..+++.++|.+++.||..-
T Consensus 142 e~AiKlAr~~----------------------------------------~~~~g~~~r~~ii~~~~~yHG~t------- 174 (473)
T 4e3q_A 142 DTMVKMLWFL----------------------------------------HAAEGKPQKRKILTRWNAYHGVT------- 174 (473)
T ss_dssp HHHHHHHHHH----------------------------------------HHHTTCTTCCEEEEETTCCCCSS-------
T ss_pred HHHHHHHHHH----------------------------------------HHhcCCCCcceEEEeeceECCCc-------
Confidence 9999654320 01122345667777777776210
Q ss_pred HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848 169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL 248 (514)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l 248 (514)
.|....++... ...........+.++.++.......+.....+.....+.+
T Consensus 175 -------------------~~a~s~tg~~~----------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l 225 (473)
T 4e3q_A 175 -------------------AVSASMTGKPY----------NSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLAREL 225 (473)
T ss_dssp -------------------HHHHHHSCCGG----------GGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHH
T ss_pred -------------------ccccccccccc----------ccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHH
Confidence 00000000000 0000000000011111111000000000000001123456
Q ss_pred HHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCceEE
Q psy16848 249 TQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMDII 323 (514)
Q Consensus 249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~di~ 323 (514)
++.+.+...+++++|++|+++...|.+.+ +++|+++|++||++||.||+++ +|+.|..+ ..+.+++ .||++
T Consensus 226 ~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~f--a~e~~gv--~PDi~ 301 (473)
T 4e3q_A 226 EETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTW--GCVTYDF--TPDAI 301 (473)
T ss_dssp HHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSC--HHHHTTC--CCSEE
T ss_pred HHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchh--HHHhcCC--CCChH
Confidence 66666666667899999999999999877 8999999999999999999999 66665433 2345555 89999
Q ss_pred EcCCcccccCCC---eEEEecHHHHHHHHhhc-----CceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy16848 324 SGTLGKAFGNIG---GYIVGTKNFIDTIRSYA-----AGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYL 395 (514)
Q Consensus 324 ~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 395 (514)
+++|.+++.+ |.+++++++.+.+.... ...+++++.+|+.++++.++|+.+.++. +.++.+++.+++
T Consensus 302 --t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~~---l~~~~~~~g~~l 376 (473)
T 4e3q_A 302 --ISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEG---LAENVRRLAPRF 376 (473)
T ss_dssp --EECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHH
T ss_pred --HhcccccCCCCCcccccccHHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhcccc---HHHHHHHHHHHH
Confidence 8999997732 88999999888775421 1223366889999999999999987776 677788888888
Q ss_pred HHHHHhC-CCc---cccCCCcEEEEEeCCC-----------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCC
Q psy16848 396 RNELIQI-GFP---VEHTPSHIIPIKIGNP-----------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTP 460 (514)
Q Consensus 396 ~~~L~~~-g~~---~~~~~~~~~~i~l~~~-----------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~ 460 (514)
.+.|+++ ..+ -+...|.++.+++... .....+.+.++ ++|+++.+. .+.+|+++++
T Consensus 377 ~~~L~~l~~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~--------g~~i~l~PPL 447 (473)
T 4e3q_A 377 EERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCT-DLGLICRPL--------GQSVVLCPPF 447 (473)
T ss_dssp HHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHH-HTTEECEEE--------TTEEEECCCT
T ss_pred HHHHHHHhcCCCeeEEeecceEEEEEEecCccccccccccHHHHHHHHHHHH-HCCcEEEec--------CCEEEEeCCC
Confidence 8888775 212 1234566888876321 12456888886 999998753 2479999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHc
Q psy16848 461 FHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 461 ~~t~e~id~~~~~l~~~l~~~ 481 (514)
.+|++|+|+++++++++++++
T Consensus 448 ~it~~eid~~~~~l~~al~~v 468 (473)
T 4e3q_A 448 ILTEAQMDEMFDKLEKALDKV 468 (473)
T ss_dssp TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998775
No 87
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.96 E-value=1.1e-28 Score=250.10 Aligned_cols=333 Identities=17% Similarity=0.142 Sum_probs=234.4
Q ss_pred eeecccCCCCCChhHHHHHHHHHHHhCCCCC-CcCcccCcchHHHHHHHHHHhHcCCCc--EEEEeccccccccchhhcc
Q psy16848 20 TCRLSSVQYKVPKGGRKCLGEALEKFGTGAG-GTRNISGNSLFHEKLEEDVAKLHQKEA--GLVFTSCYVANDSTLFTLG 96 (514)
Q Consensus 20 ~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~--~i~~~sGt~a~~~~l~~l~ 96 (514)
|+|+++.. ..+|.+.+++.+++........ .+....+..+..+++++++++++|.+. ++++++|++|+..++.++.
T Consensus 3 yld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~ 81 (382)
T 4hvk_A 3 YFDYTSAK-PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYA 81 (382)
T ss_dssp BCBTTTCC-CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHH
T ss_pred eecCCCcC-CCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhh
Confidence 45655443 3478999999999986322111 122223346778899999999999753 5666777888988888876
Q ss_pred ----ccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848 97 ----KMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV 172 (514)
Q Consensus 97 ----~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
. +||.|+++.++|.+...+++..
T Consensus 82 ~~~~~--~gd~vi~~~~~~~~~~~~~~~~--------------------------------------------------- 108 (382)
T 4hvk_A 82 MRNAR--KGKHILVSAVEHMSVINPAKFL--------------------------------------------------- 108 (382)
T ss_dssp HHHGG--GCCEEEEETTCCHHHHHHHHHH---------------------------------------------------
T ss_pred hhhcC--CCCEEEECCCCcHHHHHHHHHH---------------------------------------------------
Confidence 5 9999999999999987554331
Q ss_pred hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC-----ChhH
Q psy16848 173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN-----DVNH 247 (514)
Q Consensus 173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~-----d~~~ 247 (514)
...|++++.++.+ |.+.
T Consensus 109 ----------------------------------------------------------~~~g~~~~~v~~~~~~~~d~~~ 130 (382)
T 4hvk_A 109 ----------------------------------------------------------QKQGFEVEYIPVGKYGEVDVSF 130 (382)
T ss_dssp ----------------------------------------------------------HHTTCEEEEECBCTTSCBCHHH
T ss_pred ----------------------------------------------------------HhcCCEEEEeccCCCCCcCHHH
Confidence 1123333444321 3444
Q ss_pred HHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCC
Q psy16848 248 LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 327 (514)
Q Consensus 248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~ 327 (514)
+++.+ +++++++++++++||+|.+.|+++|.++|++||+ +|+|++|+.+.. .......++|++++|+
T Consensus 131 l~~~i----~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~--------~~~~~~~~~d~~~~s~ 197 (382)
T 4hvk_A 131 IDQKL----RDDTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQI--------EVDVEKIGADMLTISS 197 (382)
T ss_dssp HHHHC----CTTEEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTB--------CCCHHHHTCSEEEEES
T ss_pred HHHHh----ccCceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCC--------CCCchhcCCCEEEEeH
Confidence 44444 4568999999999999999999999999999999 999999986543 1111123679999999
Q ss_pred cccccCCC-eEEEecHHHHHHHHhhcCce-----EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848 328 GKAFGNIG-GYIVGTKNFIDTIRSYAAGF-----IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ 401 (514)
Q Consensus 328 sK~lg~~G-G~l~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 401 (514)
||++|+.| |+++.+++. .+.....+. ....+.+...+.++.++++.. .+++++.+++++++++++.+.|++
T Consensus 198 ~K~~g~~g~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 274 (382)
T 4hvk_A 198 NDIYGPKGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEIT-AMEWREEAERLRRLRDRIIDNVLK 274 (382)
T ss_dssp GGGTSCTTCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCceEEEEEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhc
Confidence 99888766 888877654 222211100 002245667777777777755 357788999999999999999998
Q ss_pred C-CCccccCCC----cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCC----------------CcEEEEEeCC
Q psy16848 402 I-GFPVEHTPS----HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVG----------------EEKIRLAPTP 460 (514)
Q Consensus 402 ~-g~~~~~~~~----~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~----------------~~~iRl~~~~ 460 (514)
+ ++.+..+.. +++.+.++. .+..++.+.|. ++||.++++..|..... ++++|++++.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~ 352 (382)
T 4hvk_A 275 IEESYLNGHPEKRLPNNVNVRFSY-IEGESIVLSLD-MAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGR 352 (382)
T ss_dssp STTEEECSCSSSBCTTEEEEEETT-CCHHHHHHHHH-HTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCT
T ss_pred CCCeEEeCCccccCCCEEEEEECC-CCHHHHHHHHH-HCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCC
Confidence 7 776654432 477777754 45778888885 89999998875443210 5799999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHcC
Q psy16848 461 FHTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 461 ~~t~e~id~~~~~l~~~l~~~~ 482 (514)
.+|++|+++++++|+++++++.
T Consensus 353 ~~t~e~i~~~~~~l~~~~~~~~ 374 (382)
T 4hvk_A 353 YNTDEDVDRLLEVLPGVIERLR 374 (382)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 88
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.96 E-value=1.6e-28 Score=253.47 Aligned_cols=207 Identities=23% Similarity=0.301 Sum_probs=161.7
Q ss_pred CCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848 257 VKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMDIISGTLGKAF 331 (514)
Q Consensus 257 ~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l 331 (514)
.+++++|++++++...|.+.+ +++|+++|++||++||+||+++ +|+.|+.+ ..+.+++ .||++ +++|.+
T Consensus 224 ~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~--a~e~~gv--~PDiv--t~gK~l 297 (456)
T 4atq_A 224 GDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWF--AVDHEGV--VPDII--TMAKGI 297 (456)
T ss_dssp GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS--GGGGTTC--CCSEE--EECGGG
T ss_pred CCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccc--cccccCC--CCchh--hhhhcc
Confidence 346899999999999998877 8999999999999999999999 67776543 2445665 89999 889999
Q ss_pred cCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC--CC--
Q psy16848 332 GNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI--GF-- 404 (514)
Q Consensus 332 g~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~-- 404 (514)
|+ | |.+++++++.+.+.....+. +++.+++.++++.++|+.+.++. +.++.++..+++.+.|+++ .+
T Consensus 298 gg-g~P~~av~~~~~i~~~~~~~~~~~--Tf~gnpla~aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~ 371 (456)
T 4atq_A 298 AG-GLPLSAITGRADLLDAVHPGGLGG--TYGGNPVACAAALAAIDTMEQHD---LNGRARHIEELALGKLRELAAELSA 371 (456)
T ss_dssp GT-TSSCEEEEEEHHHHTTSCTTSSCC--SSSSCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred cC-cCCceeeEecHHHHhcccccCCCC--CCCCChHHHHhhHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 86 4 88899999888776655444 66889999999999999997766 6667777777777777654 11
Q ss_pred ---cc---ccCCCcEEEEEeCCC-------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHH
Q psy16848 405 ---PV---EHTPSHIIPIKIGNP-------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFV 471 (514)
Q Consensus 405 ---~~---~~~~~~~~~i~l~~~-------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~ 471 (514)
++ +...|.++.+++.+. .....+.+.++ ++|+.+.+.. ...+.||+.+++.+|++++++++
T Consensus 372 ~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~-~~Gvl~~~~g-----~~~~~irl~PpL~it~~~id~~l 445 (456)
T 4atq_A 372 GGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACL-KEGVIILTCG-----TYGNVIRLLPPLVISDELLIDGL 445 (456)
T ss_dssp ----CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHH-HTTEECEEEC-----TTSCEEEECCCTTCCHHHHHHHH
T ss_pred ccCCceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHH-HCCCEEEecC-----CCCCEEEEECCCCCCHHHHHHHH
Confidence 22 234567888887432 22457888886 9999986432 12468999999999999999999
Q ss_pred HHHHHHHHHc
Q psy16848 472 TDLLAVWKSL 481 (514)
Q Consensus 472 ~~l~~~l~~~ 481 (514)
++|+++++..
T Consensus 446 ~~l~~al~a~ 455 (456)
T 4atq_A 446 EVLAAAIKAH 455 (456)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9999998753
No 89
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.96 E-value=4.5e-28 Score=246.82 Aligned_cols=331 Identities=18% Similarity=0.165 Sum_probs=238.3
Q ss_pred eecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC---cEEEEeccccccccchhhccc
Q psy16848 21 CRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE---AGLVFTSCYVANDSTLFTLGK 97 (514)
Q Consensus 21 ~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~i~~~sGt~a~~~~l~~l~~ 97 (514)
+.+....+..+|++.+++.+++. .. ......+...+++++++++++.+ ..++++||++|+..++.++..
T Consensus 25 ~~~~p~p~~~~~~v~~a~~~~~~----~~----~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~ 96 (393)
T 3kgw_A 25 LLLGPGPSNLAPRVLAAGSLRMI----GH----MQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLE 96 (393)
T ss_dssp EECSSSCCCCCHHHHHHTTCCCC----CT----TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCC
T ss_pred eeccCCCCCCCHHHHHHhccccc----Cc----ccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCC
Confidence 33433334446777776655321 11 11122467789999999999865 246668899999999988865
Q ss_pred cCCCceEEecCccchhh--hhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhh
Q psy16848 98 MIPGLHYISDAGNHASM--IQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ 175 (514)
Q Consensus 98 ~~~gd~v~~~~~~h~~~--~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (514)
+||.|+++.+.|.+. ...++..|.+++.++...
T Consensus 97 --~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------------------------------------------- 131 (393)
T 3kgw_A 97 --PGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKP------------------------------------------- 131 (393)
T ss_dssp --TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-------------------------------------------
T ss_pred --CCCEEEEEeCCchhHHHHHHHHHcCCceEEEeCCC-------------------------------------------
Confidence 999999998877532 344444555444332110
Q ss_pred cCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhc
Q psy16848 176 HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENM 255 (514)
Q Consensus 176 ~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~ 255 (514)
. ...|.+.+++.+++.
T Consensus 132 --------------------~--------------------------------------------~~~d~~~l~~~i~~~ 147 (393)
T 3kgw_A 132 --------------------G--------------------------------------------EHYTLQEVEEGLAQH 147 (393)
T ss_dssp --------------------T--------------------------------------------CCCCHHHHHHHHHHH
T ss_pred --------------------C--------------------------------------------CCCCHHHHHHHHhhC
Confidence 0 012566667766642
Q ss_pred cCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc-cCC
Q psy16848 256 DVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF-GNI 334 (514)
Q Consensus 256 ~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l-g~~ 334 (514)
++++|++++++||+|.+.|+++|.++|++||+++|+||+|+++... + ... ..++|+++.|+||++ ++.
T Consensus 148 ---~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~-----~-~~~--~~~~d~~~~s~sK~~~~~~ 216 (393)
T 3kgw_A 148 ---KPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVP-----I-YMD--QQGIDIMYSSSQKVLNAPP 216 (393)
T ss_dssp ---CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSC-----C-CTT--TTTCCEEEEESSSTTCCCS
T ss_pred ---CCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcc-----c-chh--hcCCCEEEecCcccccCCC
Confidence 4789999999999999999999999999999999999999865321 1 111 236799999999987 455
Q ss_pred C-eEEEecHHHHHHHHhhcCce---------------------EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q psy16848 335 G-GYIVGTKNFIDTIRSYAAGF---------------------IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIV 392 (514)
Q Consensus 335 G-G~l~~~~~~~~~l~~~~~~~---------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 392 (514)
| |++++++++++.+......+ ....+.+...++++.++++.+.+.+++++++++++++
T Consensus 217 g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~ 296 (393)
T 3kgw_A 217 GISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREAT 296 (393)
T ss_dssp SCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred ceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6 99999999998887533211 1123457777888888888776667888999999999
Q ss_pred HHHHHHHHhCCCccccCC-----CcEEEEEeCCCccHHHHHHHHHHhC-CeEEecccCCCCCCCCcEEEEEe-CCCCCHH
Q psy16848 393 AYLRNELIQIGFPVEHTP-----SHIIPIKIGNPALNTKICDMLLKEK-GHYVQPINYPTVPVGEEKIRLAP-TPFHTRE 465 (514)
Q Consensus 393 ~~l~~~L~~~g~~~~~~~-----~~~~~i~l~~~~~~~~~~~~Ll~~~-GI~v~~~~~~~~~~~~~~iRl~~-~~~~t~e 465 (514)
+++.+.|++.++.+..+. +.++++.+++..+..++.+.|+ ++ ||.+.++..+ ..++++|+++ +..++++
T Consensus 297 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~gi~v~~g~~~---~~~~~iRi~~~~~~~~~~ 372 (393)
T 3kgw_A 297 AHLHKHLQEMGLKFFVKDPEIRLPTITTVTVPAGYNWRDIVSYVL-DHFSIEISGGLGP---TEERVLRIGLLGYNATTE 372 (393)
T ss_dssp HHHHHHHHHTTCCBSSSSGGGBCSSEEEEECCTTBCHHHHHHHHH-HHHCEECBCCCGG---GTTTEEEEECCGGGCCHH
T ss_pred HHHHHHHHHcCCeeccCChhhcCCeEEEEeCCCCCCHHHHHHHHH-HhCCEEEeCCccc---CCCCEEEEEecccCCCHH
Confidence 999999999887765322 2356688876667889999997 65 9999987642 2357999998 6556999
Q ss_pred HHHHHHHHHHHHHHHcCC
Q psy16848 466 MIDKFVTDLLAVWKSLDL 483 (514)
Q Consensus 466 ~id~~~~~l~~~l~~~~~ 483 (514)
++++++++|+++++++..
T Consensus 373 ~i~~~~~~l~~~l~~~~~ 390 (393)
T 3kgw_A 373 NVDRVAEALREALQHCPK 390 (393)
T ss_dssp HHHHHHHHHHHHHHHSCB
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 999999999999988753
No 90
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.96 E-value=1.5e-28 Score=252.90 Aligned_cols=343 Identities=14% Similarity=0.104 Sum_probs=237.2
Q ss_pred ceeeecccCC------CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--------------CCc
Q psy16848 18 RVTCRLSSVQ------YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--------------KEA 77 (514)
Q Consensus 18 ~~~~d~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--------------~~~ 77 (514)
..++||..++ +..+|.+.+++.+++.... ..++....+ ..++++.++++++ .++
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~--~~~y~~~~~----~~~lr~~la~~~~~~~~~~~~~~~~~~~~~ 106 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQE--CNGYFPTVG----SPEAREAVATWWRNSFVHKEELKSTIVKDN 106 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTC--SSSCCCTTC----CHHHHHHHHHHHHHHHCCSTTTGGGCCGGG
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCc--cCCcCCCCC----CHHHHHHHHHHHHhhhcccccCCCCCCcce
Confidence 4689997654 3357899999999987631 111111123 3455555555554 345
Q ss_pred EEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccc
Q psy16848 78 GLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 157 (514)
Q Consensus 78 ~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~ 157 (514)
++++++|++|+..++.++.. +||.|+++.++|.+....++..|.+++.++... +
T Consensus 107 v~~~~g~~~al~~~~~~l~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~----------------------- 160 (416)
T 1bw0_A 107 VVLCSGGSHGILMAITAICD--AGDYALVPQPGFPHYETVCKAYGIGMHFYNCRP-E----------------------- 160 (416)
T ss_dssp EEEESHHHHHHHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEG-G-----------------------
T ss_pred EEEeCChHHHHHHHHHHhCC--CCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCc-c-----------------------
Confidence 67777788899889888865 999999999999998877777777665443210 0
Q ss_pred cccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCE
Q psy16848 158 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPK 237 (514)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~ 237 (514)
.+.
T Consensus 161 ------------------------------------~~~----------------------------------------- 163 (416)
T 1bw0_A 161 ------------------------------------NDW----------------------------------------- 163 (416)
T ss_dssp ------------------------------------GTT-----------------------------------------
T ss_pred ------------------------------------cCC-----------------------------------------
Confidence 000
Q ss_pred EEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCC--Cccc
Q psy16848 238 IIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGA--GIGE 312 (514)
Q Consensus 238 ~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~--~~~~ 312 (514)
..|.+.+++.+ +++++++++++|+||||.++| +++|.++|++||+++|+||+|+....+.... .+..
T Consensus 164 ----~~d~~~l~~~l----~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 235 (416)
T 1bw0_A 164 ----EADLDEIRRLK----DDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTS 235 (416)
T ss_dssp ----EECHHHHHHHC----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCC
T ss_pred ----CCCHHHHHHHh----ccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccC
Confidence 01344444444 345789999999999999999 9999999999999999999999543321100 1112
Q ss_pred cCCC-ccCceEEEcCCcccccCCC---eEEEecHH--HHHHHHhhcCce-EeccCCcHHHHHHHHHHHHHhhhchHHHHH
Q psy16848 313 RDGQ-LHNMDIISGTLGKAFGNIG---GYIVGTKN--FIDTIRSYAAGF-IFTTSLPPTVLAGAREAIRILSSQEGVELR 385 (514)
Q Consensus 313 ~~~~-~~~~di~~~S~sK~lg~~G---G~l~~~~~--~~~~l~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 385 (514)
...+ ....+++++|+||+++.+| ||++++++ +++.+....... ..+.+.++..++++.++|+.....++++.+
T Consensus 236 ~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 315 (416)
T 1bw0_A 236 VADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIV 315 (416)
T ss_dssp TTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHccCCCcEEEEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHH
Confidence 2221 1234788999999987656 89987653 443332111000 013367888888888888754445677889
Q ss_pred HHHHHHHHHHHHHHHhC-CCccccCC-CcEEEEEeCC-----CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEe
Q psy16848 386 AKHQDIVAYLRNELIQI-GFPVEHTP-SHIIPIKIGN-----PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP 458 (514)
Q Consensus 386 ~~~~~~~~~l~~~L~~~-g~~~~~~~-~~~~~i~l~~-----~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~ 458 (514)
++++++++++.+.|+++ ++.+..+. +.++++.++. ..+..++.+.|++++||.+.++..+.. ++++|+++
T Consensus 316 ~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~---~~~iRis~ 392 (416)
T 1bw0_A 316 AKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHA---PGFTRLTT 392 (416)
T ss_dssp HHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTC---TTEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCC---CCeEEEEe
Confidence 99999999999999987 77765554 5567777753 135678888886588999999886542 46999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848 459 TPFHTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 459 ~~~~t~e~id~~~~~l~~~l~~~~ 482 (514)
+ .+++++++++++|++++++.+
T Consensus 393 ~--~~~e~l~~~l~~l~~~l~~~~ 414 (416)
T 1bw0_A 393 T--RPVEVYREAVERIKAFCQRHA 414 (416)
T ss_dssp C--SCHHHHHHHHHHHHHHHHHHB
T ss_pred c--CCHHHHHHHHHHHHHHHHHhh
Confidence 6 689999999999999987653
No 91
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.96 E-value=3e-28 Score=249.73 Aligned_cols=338 Identities=17% Similarity=0.144 Sum_probs=242.4
Q ss_pred cCCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccc
Q psy16848 15 KSNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND 89 (514)
Q Consensus 15 ~~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~ 89 (514)
.+|+.++|+.++ .+++ +|++.+++.+++.+..... . . ...+...+++++++++++.+++++++||++|+.
T Consensus 36 ~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~--~--~-~~~~~~~~l~~~la~~~~~~~v~~~~gg~~a~~ 110 (406)
T 4adb_A 36 QQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTG--N--G-YTNEPVLRLAKKLIDATFADRVFFCNSGAEANE 110 (406)
T ss_dssp TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCC--T--T-SCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHH
T ss_pred CCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccccc--C--C-cCCHHHHHHHHHHHhhCCCCeEEEeCcHHHHHH
Confidence 367788999776 6765 7999999999998643221 1 1 134678999999999999998999999999999
Q ss_pred cchhhcccc------CCCceEEecCccchhh-hhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCC
Q psy16848 90 STLFTLGKM------IPGLHYISDAGNHASM-IQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGA 162 (514)
Q Consensus 90 ~~l~~l~~~------~~gd~v~~~~~~h~~~-~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
.++.++... ..+|.|++.++.|+.. ..+....+.....
T Consensus 111 ~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~----------------------------------- 155 (406)
T 4adb_A 111 AALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYS----------------------------------- 155 (406)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGT-----------------------------------
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCcccc-----------------------------------
Confidence 998876421 1336666655555444 4333333221100
Q ss_pred ccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC
Q psy16848 163 ICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH 242 (514)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~ 242 (514)
..+...+..+..++.
T Consensus 156 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 170 (406)
T 4adb_A 156 -----------------------------------------------------------------QDFAPLPADIRHAAY 170 (406)
T ss_dssp -----------------------------------------------------------------GGGCSCCSSEEEECT
T ss_pred -----------------------------------------------------------------ccCCCCCCCceEeCC
Confidence 001112334566666
Q ss_pred CChhHHHHHHhhccCCCceEEEEecCCCCCcccc--C---HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCC
Q psy16848 243 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC--P---LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQ 316 (514)
Q Consensus 243 ~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~--~---l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~ 316 (514)
+|.+.+++.+. +++++|+++ |+||+|.++ + +++|.++|++||+++|+||+|+ ++..|... .....+
T Consensus 171 ~d~~~l~~~l~----~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~--~~~~~~- 242 (406)
T 4adb_A 171 NDINSASALID----DSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELY--AYMHYG- 242 (406)
T ss_dssp TCHHHHHTTCS----TTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS--HHHHHT-
T ss_pred CcHHHHHHHhc----CCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhH--HHHhcC-
Confidence 67666665553 568999999 789998876 3 8999999999999999999997 43333211 111222
Q ss_pred ccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q psy16848 317 LHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVA 393 (514)
Q Consensus 317 ~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 393 (514)
..+|++ ||||.+++ | |++++++++++.+....... +.+.+++.++++.++++.+.. ++.+++++++++
T Consensus 243 -~~~d~~--t~sK~~~~-G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~ 313 (406)
T 4adb_A 243 -VTPDLL--TTAKALGG-GFPVGALLATEECARVMTVGTHGT--TYGGNPLASAVAGKVLELINT---PEMLNGVKQRHD 313 (406)
T ss_dssp -CCCSEE--EECGGGGT-TSCCEEEEECHHHHHTCCTTSSCC--SSTTCHHHHHHHHHHHHHHSS---HHHHHHHHHHHH
T ss_pred -CCCCEE--EechhhcC-CCCeEEEEEcHHHHhhhccCCcCC--CCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHH
Confidence 257888 78999985 5 99999999988877655444 447889999999999987643 468888899999
Q ss_pred HHHHHHHhCCC--cc---ccCCCcEEEEEeCCCc--cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHH
Q psy16848 394 YLRNELIQIGF--PV---EHTPSHIIPIKIGNPA--LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREM 466 (514)
Q Consensus 394 ~l~~~L~~~g~--~~---~~~~~~~~~i~l~~~~--~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~ 466 (514)
++.+.|++.+. .. ....+.++++.+++.. +..++.+.|+ ++||.+.++. .+++|++++..+++++
T Consensus 314 ~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~-------~~~iRi~~~~~~~~e~ 385 (406)
T 4adb_A 314 WFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYAGQAKQISQEAA-KAGVMVLIAG-------GNVVRFAPALNVSEEE 385 (406)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEETTEEEEEECTTTTTCHHHHHHHHH-HTTEECEESS-------TTEEEECCCTTCCHHH
T ss_pred HHHHHHHHHHHhCCCceEEEEEEEEEEEEEeCCcHHHHHHHHHHHH-HCCcEEeecC-------CCeEEEECCCCCCHHH
Confidence 99988887521 11 2234668888887632 5788999996 8899998632 5699999988899999
Q ss_pred HHHHHHHHHHHHHHcC
Q psy16848 467 IDKFVTDLLAVWKSLD 482 (514)
Q Consensus 467 id~~~~~l~~~l~~~~ 482 (514)
+++++++|+++++++.
T Consensus 386 i~~~~~~l~~~l~~~~ 401 (406)
T 4adb_A 386 VTTGLDRFAAACEHFV 401 (406)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998763
No 92
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.96 E-value=1.5e-27 Score=246.52 Aligned_cols=349 Identities=12% Similarity=0.078 Sum_probs=233.6
Q ss_pred eeeecccC-CCCCChhHHHHHHHHHH---------HhCCCCCCcCcccCcchHHHHHHHHHHhHcC------CCcEEEEe
Q psy16848 19 VTCRLSSV-QYKVPKGGRKCLGEALE---------KFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ------KEAGLVFT 82 (514)
Q Consensus 19 ~~~d~~~~-~~~~~~~~~~a~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~i~~~ 82 (514)
.++|+.++ +.+++|.+.+++.++.. ... ....+....|..++.+++.+.+.+.+| .+..++++
T Consensus 37 ~~i~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~ 115 (428)
T 1iay_A 37 GVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFK-AIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAG 115 (428)
T ss_dssp SBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHH-HHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEE
T ss_pred ceeeeccccchhhHHHHHHHHHhccccccccccccccH-hhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEcc
Confidence 57898653 34456677777764321 000 000011111233444444444443333 34456666
Q ss_pred ccccccccchhhccccCCCceEEecCccchhhhhhhh-cCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccC
Q psy16848 83 SCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIR-NSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG 161 (514)
Q Consensus 83 sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~-~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 161 (514)
++++++..++.++.. +||.|+++.++|.+....+. ..|.+++.++....+
T Consensus 116 G~~~ai~~~~~~~~~--~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~--------------------------- 166 (428)
T 1iay_A 116 GATGANETIIFCLAD--PGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSN--------------------------- 166 (428)
T ss_dssp HHHHHHHHHHHHHCC--TTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTT---------------------------
T ss_pred ChHHHHHHHHHHhCC--CCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCcc---------------------------
Confidence 677888888888866 99999999999999876553 567776655431000
Q ss_pred CccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec
Q psy16848 162 AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~ 241 (514)
+.
T Consensus 167 ---------------------------------~~--------------------------------------------- 168 (428)
T 1iay_A 167 ---------------------------------NF--------------------------------------------- 168 (428)
T ss_dssp ---------------------------------TT---------------------------------------------
T ss_pred ---------------------------------CC---------------------------------------------
Confidence 00
Q ss_pred CCChhHHHHHHhhc--cCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC-CCCCccccCC
Q psy16848 242 HNDVNHLTQVLENM--DVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE-HGAGIGERDG 315 (514)
Q Consensus 242 ~~d~~~l~~~l~~~--~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~-~~~~~~~~~~ 315 (514)
..|.+.+++.+++. ..++++++++++|+||||.++| +++|.++|++||+++|+||+|+.+.++. ...++.....
T Consensus 169 ~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~ 248 (428)
T 1iay_A 169 KITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILD 248 (428)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHT
T ss_pred cCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhcc
Confidence 01455555555532 1235889999999999999999 9999999999999999999999543321 1111111111
Q ss_pred ------CccCceEEEcCCcccccCCC---eEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhh--hchHHH
Q psy16848 316 ------QLHNMDIISGTLGKAFGNIG---GYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS--SQEGVE 383 (514)
Q Consensus 316 ------~~~~~di~~~S~sK~lg~~G---G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~ 383 (514)
...+..+++.|+||++|.+| |++++ ++++++.+......+ +.+.+.+.++.++++... ..++++
T Consensus 249 ~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~~~~----~~~~~~~~a~~~~l~~~~~~~~~~~~ 324 (428)
T 1iay_A 249 EQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFG----LVSTQTQYFLAAMLSDEKFVDNFLRE 324 (428)
T ss_dssp SGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTTS----CCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHHhcc----cCCHHHHHHHHHHhcChHHHHHHHHH
Confidence 00234488999999998667 99988 678888887654332 567788888777776321 235677
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccccC-CCcEEEEEeCCC------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEE
Q psy16848 384 LRAKHQDIVAYLRNELIQIGFPVEHT-PSHIIPIKIGNP------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRL 456 (514)
Q Consensus 384 ~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~i~l~~~------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl 456 (514)
.+++++++++++.+.|+++|+.+..+ .+.++++.++.. ....++.+.|++++||.+.++..+... +++++|+
T Consensus 325 ~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~-~~~~iRi 403 (428)
T 1iay_A 325 SAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQ-EPGWFRV 403 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCS-SSSEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCC-CCCEEEE
Confidence 88899999999999999988877666 455777887642 134578888863459999998764422 3579999
Q ss_pred EeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 457 APTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 457 ~~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
+++ .++++++++++++|++++++.
T Consensus 404 s~~-~~~~e~i~~~~~~l~~~l~~~ 427 (428)
T 1iay_A 404 CFA-NMDDGTVDIALARIRRFVGVE 427 (428)
T ss_dssp ECS-SSCHHHHHHHHHHHHHHHHTT
T ss_pred EEe-cCCHHHHHHHHHHHHHHHhcc
Confidence 998 689999999999999988753
No 93
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.96 E-value=2e-27 Score=245.46 Aligned_cols=308 Identities=15% Similarity=0.081 Sum_probs=226.5
Q ss_pred cCcchHHHHHHHHHHhHcCCC----------cEEEEec-cccccccchhhccccCCCceEEecCccchhhhhhhhcCCCC
Q psy16848 56 SGNSLFHEKLEEDVAKLHQKE----------AGLVFTS-CYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAP 124 (514)
Q Consensus 56 ~~~~~~~~~~~~~la~~~~~~----------~~i~~~s-Gt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~ 124 (514)
.|..++.+++++.+++.+|.+ ..+++++ +++++..++.++.. +||.|+++.+.|......++..|.+
T Consensus 78 ~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~ 155 (425)
T 2r2n_A 78 AGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIIN--PGDNVLLDEPAYSGTLQSLHPLGCN 155 (425)
T ss_dssp TCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCC--TTCEEEEESSCCHHHHHHHGGGTCE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCC--CCCEEEEeCCCcHHHHHHHHHcCCE
Confidence 466788888888888877743 2455555 56778888888866 9999999999999999999999988
Q ss_pred eeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCc
Q psy16848 125 KIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQ 204 (514)
Q Consensus 125 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~ 204 (514)
++.++.++ +
T Consensus 156 ~~~v~~~~-~---------------------------------------------------------------------- 164 (425)
T 2r2n_A 156 IINVASDE-S---------------------------------------------------------------------- 164 (425)
T ss_dssp EEEECEET-T----------------------------------------------------------------------
T ss_pred EEEeCcCC-C----------------------------------------------------------------------
Confidence 87665410 0
Q ss_pred hhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhcc--------CCCceEEEE-ecCCCCCccc
Q psy16848 205 LHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD--------VKIPKLVAF-ETVHSMTGAI 275 (514)
Q Consensus 205 ~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~--------~~~~~~vv~-~~~~nptG~~ 275 (514)
..|.+.+++.+++.. .++++++++ ++++||||.+
T Consensus 165 -------------------------------------~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~ 207 (425)
T 2r2n_A 165 -------------------------------------GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNS 207 (425)
T ss_dssp -------------------------------------EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCC
T ss_pred -------------------------------------CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCc
Confidence 003344444443211 134677765 7899999999
Q ss_pred cC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHH
Q psy16848 276 CP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTI 348 (514)
Q Consensus 276 ~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l 348 (514)
++ +++|.++|++||+++|+||+|+...+ +....++.... ..+.+++++||||+++ +| ||+++++++++.+
T Consensus 208 ~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~--~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l~~~l 284 (425)
T 2r2n_A 208 LTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMD--VDGRVIRADSFSKIIS-SGLRIGFLTGPKPLIERV 284 (425)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGC--TTSCEEEEEESTTTTC-STTCCEEEEEEHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccC--CCCCEEEEccchhhcc-CccceEEEecCHHHHHHH
Confidence 99 56999999999999999999995433 33222232222 1356899999999998 57 9999999999888
Q ss_pred HhhcCceEeccCCcHHHHHHHHHHHHHhh----hchHHHHHHHHHHHHHHHHHHHHhC--CC-ccccC-CCcEEEEEeCC
Q psy16848 349 RSYAAGFIFTTSLPPTVLAGAREAIRILS----SQEGVELRAKHQDIVAYLRNELIQI--GF-PVEHT-PSHIIPIKIGN 420 (514)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~~~l~~~L~~~--g~-~~~~~-~~~~~~i~l~~ 420 (514)
....... +.+.+.+.+.++.++++.+. ..++++++++++++++++.+.|++. ++ .+..+ .+.++++.++.
T Consensus 285 ~~~~~~~--~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~ 362 (425)
T 2r2n_A 285 ILHIQVS--TLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKG 362 (425)
T ss_dssp HHHHHTT--TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETT
T ss_pred HHHHHHh--cCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCC
Confidence 7655443 33678888888888887532 2456778888999999999999884 65 34434 45577888876
Q ss_pred CccHHH-HHHHHHHhCCeEEecccCCCCC--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848 421 PALNTK-ICDMLLKEKGHYVQPINYPTVP--VGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS 480 (514)
Q Consensus 421 ~~~~~~-~~~~Ll~~~GI~v~~~~~~~~~--~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~ 480 (514)
..+..+ +.+.| .++||.+.++..|... .+.+++|++++. .+++++++++++|++++++
T Consensus 363 ~~~~~~~~~~~l-~~~gv~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 363 INDVKELIEEKA-VKMGVLMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp CSCCHHHHHTHH-HHTTEECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHCCcEEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHH
Confidence 444555 46677 4999999999875543 235799999983 5999999999999998865
No 94
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.96 E-value=4.9e-28 Score=246.94 Aligned_cols=336 Identities=17% Similarity=0.128 Sum_probs=238.6
Q ss_pred CCceeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCc---EEEEeccccccccch
Q psy16848 16 SNRVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEA---GLVFTSCYVANDSTL 92 (514)
Q Consensus 16 ~g~~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~i~~~sGt~a~~~~l 92 (514)
+++.+.+.. +.+..+|++.+++.+++.. . +.....+..+++++++++++|.+. .++++|||+|+..++
T Consensus 17 ~~~~~~~~~-g~~~~~~~v~~a~~~~~~~----~----~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~ 87 (393)
T 2huf_A 17 TPNKLLMGP-GPSNAPQRVLDAMSRPILG----H----LHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATL 87 (393)
T ss_dssp CCCCEECSS-SCCCCCHHHHHHTTSCCCC----T----TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHH
T ss_pred CCCeEEecC-CCCCCCHHHHHHHHhhhcc----C----CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHH
Confidence 445544443 3444578888877665432 0 011124678899999999999753 455678889999999
Q ss_pred hhccccCCCceEEecCccchhhh--hhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848 93 FTLGKMIPGLHYISDAGNHASMI--QGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 170 (514)
Q Consensus 93 ~~l~~~~~gd~v~~~~~~h~~~~--~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
.++.. +||.|+++.+.|.+.. ..++..|.+++.++.++ +
T Consensus 88 ~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~------------------------------------ 128 (393)
T 2huf_A 88 CNLLE--DGDVILIGHTGHWGDRSADMATRYGADVRVVKSKV-G------------------------------------ 128 (393)
T ss_dssp HHHCC--TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-T------------------------------------
T ss_pred HHHhC--CCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCC-C------------------------------------
Confidence 88865 9999999999988742 12233344443332100 0
Q ss_pred hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848 171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ 250 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ 250 (514)
...|.+.+++
T Consensus 129 ----------------------------------------------------------------------~~~d~~~l~~ 138 (393)
T 2huf_A 129 ----------------------------------------------------------------------QSLSLDEIRD 138 (393)
T ss_dssp ----------------------------------------------------------------------CCCCHHHHHH
T ss_pred ----------------------------------------------------------------------CCCCHHHHHH
Confidence 0125666666
Q ss_pred HHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccc
Q psy16848 251 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKA 330 (514)
Q Consensus 251 ~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~ 330 (514)
.+++. ++++|++++++||||.++|+++|.++|++||+++|+|++++++.. . + +.. ..++|++++|+||+
T Consensus 139 ~i~~~---~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~---~--~-~~~--~~~~d~~~~s~sK~ 207 (393)
T 2huf_A 139 ALLIH---KPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGA---P--M-FMD--RWEIDAMYTGSQKV 207 (393)
T ss_dssp HHHHH---CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTB---C--C-CTT--TTTCSEEECCSSST
T ss_pred HHhcc---CCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCC---C--c-chh--hcCccEEEECCCcc
Confidence 66542 478999999999999999999999999999999999999986542 1 1 111 23689999999998
Q ss_pred c-cCCC-eEEEecHHHHHHHHhhc---Cce-----------------Eec-cCCcHHHHHHHHHHHHHhhhchHHHHHHH
Q psy16848 331 F-GNIG-GYIVGTKNFIDTIRSYA---AGF-----------------IFT-TSLPPTVLAGAREAIRILSSQEGVELRAK 387 (514)
Q Consensus 331 l-g~~G-G~l~~~~~~~~~l~~~~---~~~-----------------~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 387 (514)
+ |+.| |++++++++++.+.... ..+ .+. .+.+...++++.++++.+.+.++++.+++
T Consensus 208 l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~ 287 (393)
T 2huf_A 208 LGAPPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIAR 287 (393)
T ss_dssp TCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred cccCCCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 6 4567 99999999998887541 111 011 24566666777778887654467888999
Q ss_pred HHHHHHHHHHHHHhCCCccccCC---C-cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEe-CCCC
Q psy16848 388 HQDIVAYLRNELIQIGFPVEHTP---S-HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP-TPFH 462 (514)
Q Consensus 388 ~~~~~~~l~~~L~~~g~~~~~~~---~-~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~-~~~~ 462 (514)
++++++++.+.|++.|+.+..+. . .++.+.++...+..++.+.|++++||.+.++..+. ..+++|+++ +..+
T Consensus 288 ~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~---~~~~~Ri~~~~~~~ 364 (393)
T 2huf_A 288 HEDCAKRLYRGLQDAGFELYADPKDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPT---AGQVFRIGLMGQNA 364 (393)
T ss_dssp HHHHHHHHHHHHHHTTCCBSSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCGGG---TTTEEEEECCGGGC
T ss_pred HHHHHHHHHHHHHHcCCeeccCccccCCcEEEEEcCCCCCHHHHHHHHHHhCCEEEecCcccc---cCCEEEEEcccCcC
Confidence 99999999999998887766542 2 37778887545678899999644599998776532 357999999 5445
Q ss_pred CHHHHHHHHHHHHHHHHHcCC
Q psy16848 463 TREMIDKFVTDLLAVWKSLDL 483 (514)
Q Consensus 463 t~e~id~~~~~l~~~l~~~~~ 483 (514)
+++++++++++|++++++++.
T Consensus 365 ~~e~i~~~~~~l~~~~~~~~~ 385 (393)
T 2huf_A 365 TTERVDRVLQVFQEAVAAVKP 385 (393)
T ss_dssp SHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHcCC
Confidence 799999999999999988754
No 95
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.96 E-value=5e-28 Score=251.72 Aligned_cols=344 Identities=15% Similarity=0.141 Sum_probs=234.5
Q ss_pred CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC---CCcEEEEeccccc
Q psy16848 16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ---KEAGLVFTSCYVA 87 (514)
Q Consensus 16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~i~~~sGt~a 87 (514)
+|+.|+||.++ ..++ ||++++++.+++++... . ....+..+...+++++++++++ .++++|++|||+|
T Consensus 59 ~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~-~---~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA 134 (451)
T 3oks_A 59 DGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTH-T---CFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEA 134 (451)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSC-C---TTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHH
T ss_pred CCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhccc-c---cCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHH
Confidence 67788888653 3344 79999999999987422 1 1123456788999999999985 3568889999999
Q ss_pred cccchhhccccCCCceEE-ecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccch
Q psy16848 88 NDSTLFTLGKMIPGLHYI-SDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL 166 (514)
Q Consensus 88 ~~~~l~~l~~~~~gd~v~-~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
+..+++.+....+++.|+ .+..+|.....+....+... .+..
T Consensus 135 ~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~-~~~~------------------------------------ 177 (451)
T 3oks_A 135 VENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVM-PYKD------------------------------------ 177 (451)
T ss_dssp HHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCT-TTTT------------------------------------
T ss_pred HHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCc-cccc------------------------------------
Confidence 999997654312334454 45555555554444433210 0000
Q ss_pred hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC----
Q psy16848 167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH---- 242 (514)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~---- 242 (514)
.+......+..++.
T Consensus 178 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 195 (451)
T 3oks_A 178 --------------------------------------------------------------GFGPFAPEIYRAPLSYPF 195 (451)
T ss_dssp --------------------------------------------------------------TCCSCCSSEEEECCCCHH
T ss_pred --------------------------------------------------------------CCCCCCCCcEEeCCCccc
Confidence 00000111122221
Q ss_pred --------------CChhHHHHHHhhccC-CCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccc
Q psy16848 243 --------------NDVNHLTQVLENMDV-KIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGL 302 (514)
Q Consensus 243 --------------~d~~~l~~~l~~~~~-~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~ 302 (514)
.+++.+++.+++... +++++|+++++++++|.+.+ +++|+++|++||+++|+||+|+ ++.
T Consensus 196 ~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~ 275 (451)
T 3oks_A 196 RDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFAR 275 (451)
T ss_dssp HHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred cccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCc
Confidence 134455566654333 45788999998888888877 9999999999999999999998 555
Q ss_pred cCCCCCCccccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhc
Q psy16848 303 YGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQ 379 (514)
Q Consensus 303 ~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 379 (514)
.|..+ ..+..+. .+|++ ||+|++++ | |++++++++++.+....... +++.+++.++++.++++.+.++
T Consensus 276 ~g~~~--~~~~~~~--~pdi~--t~sK~l~~-G~~iG~v~~~~~~~~~~~~~~~~~--t~~~~~~~~aaa~aal~~~~~~ 346 (451)
T 3oks_A 276 TGAMF--ACEHEGI--DPDLI--VTAKGIAG-GLPLSAVTGRAEIMDSPHVSGLGG--TYGGNPIACAAALATIETIESE 346 (451)
T ss_dssp TSSSS--GGGGGTC--CCSEE--EECGGGGT-TSSCEEEEEEHHHHTCSCTTSBCC--SSSSCHHHHHHHHHHHHHHHHT
T ss_pred cccch--hhhhcCC--CCCee--eehhhhhC-CcceEEEEECHHHHhhhcCCCcCC--CCCCCHHHHHHHHHHHHHHhhh
Confidence 44321 1233333 67888 89999987 6 99999999988776544333 5578999999999999977544
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhC----C-CccccCCCcEEEEEeC-------CCccHHHHHHHHHHhCCeEEecccCCCC
Q psy16848 380 EGVELRAKHQDIVAYLRNELIQI----G-FPVEHTPSHIIPIKIG-------NPALNTKICDMLLKEKGHYVQPINYPTV 447 (514)
Q Consensus 380 ~~~~~~~~~~~~~~~l~~~L~~~----g-~~~~~~~~~~~~i~l~-------~~~~~~~~~~~Ll~~~GI~v~~~~~~~~ 447 (514)
. +.++++++.+++++.|.++ . +....+.+.++++.+. +.....++.+.|+ ++||.+.++..
T Consensus 347 ~---~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~--- 419 (451)
T 3oks_A 347 G---LVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAH-AAGVIVLSCGT--- 419 (451)
T ss_dssp T---HHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEBSTTSCCBCHHHHHHHHHHHH-HTTEECEEECT---
T ss_pred h---HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEecCccCCCCHHHHHHHHHHHH-hCCcEEecCCC---
Confidence 3 5666666666666666553 2 2233456778888773 2234667888886 89999987542
Q ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848 448 PVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS 480 (514)
Q Consensus 448 ~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~ 480 (514)
..+.+|++++..++++++++++++|++++++
T Consensus 420 --~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 420 --YGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp --TSCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred --CCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 1368999999999999999999999998764
No 96
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.96 E-value=3e-27 Score=235.92 Aligned_cols=314 Identities=13% Similarity=0.123 Sum_probs=230.0
Q ss_pred CCceeeecccC-CCCC-ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCc-EEEEec-cccccccc
Q psy16848 16 SNRVTCRLSSV-QYKV-PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEA-GLVFTS-CYVANDST 91 (514)
Q Consensus 16 ~g~~~~d~~~~-~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~i~~~s-Gt~a~~~~ 91 (514)
..+.+||++++ ++++ +|.+.+++.+.+.... . +. .+...++++.++++++.+. .+++++ +++++..+
T Consensus 14 ~~~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~~----~----y~-~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~ 84 (337)
T 3p1t_A 14 AAAQAVCLAFNENPEAVEPRVQAAIAAAAARIN----R----YP-FDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRI 84 (337)
T ss_dssp CCCCCEECSSCCCCSCCCHHHHHHHHHHGGGTT----S----CC-TTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHH
T ss_pred CCCCceEeeCCCCCCCCCHHHHHHHHHhhhhhc----c----CC-CCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHH
Confidence 44578999776 4554 7899999888776421 1 11 2467899999999998653 455555 45566666
Q ss_pred hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848 92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE 171 (514)
Q Consensus 92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
+..+ +||.|+++.+.|.+....++..|.+++.++.++
T Consensus 85 ~~~~----~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~--------------------------------------- 121 (337)
T 3p1t_A 85 SAEF----SSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTD--------------------------------------- 121 (337)
T ss_dssp HHHS----TTSEEEEESSSCSHHHHHHTTSCCEEEEECBCT---------------------------------------
T ss_pred HHhc----CCCeEEEeCCCcHHHHHHHHHcCCEEEEecCCC---------------------------------------
Confidence 6554 899999999999998888777777766554310
Q ss_pred hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848 172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV 251 (514)
Q Consensus 172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~ 251 (514)
++..+.+.
T Consensus 122 ------------------------------------------------------------------------~~~~d~~~ 129 (337)
T 3p1t_A 122 ------------------------------------------------------------------------DLLLDPND 129 (337)
T ss_dssp ------------------------------------------------------------------------TSSBCHHH
T ss_pred ------------------------------------------------------------------------CCCCCHHH
Confidence 11111222
Q ss_pred HhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccc-cccCCCCCCccccCCCccCceEEEcCCccc
Q psy16848 252 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAV-GLYGEHGAGIGERDGQLHNMDIISGTLGKA 330 (514)
Q Consensus 252 l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~-g~~g~~~~~~~~~~~~~~~~di~~~S~sK~ 330 (514)
+++. .+++++++++++||||.++|++++.++|+++++ +|+||+|+. +..+.. . .. ..+.+++++|+||.
T Consensus 130 l~~~--~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~---~---~~-~~~~~i~~~S~sK~ 199 (337)
T 3p1t_A 130 LAQV--SRDDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSFRAR---G---LA-YGENELVFRSFSKS 199 (337)
T ss_dssp HTTC--CTTEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSCSSS---C---CC-CBTTEEEEEESSST
T ss_pred HHhh--cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhcccccc---c---cc-cCCCEEEEeeCchh
Confidence 3332 357899999999999999999999999999997 566999983 221110 1 11 23678999999999
Q ss_pred ccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccc
Q psy16848 331 FGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVE 407 (514)
Q Consensus 331 lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 407 (514)
+|.+| ||+++++++++.+...... .+.+...+.++.++++.. ....+.++++.++++++.+.|+++|+.+.
T Consensus 200 ~g~~G~r~G~~~~~~~~~~~l~~~~~~----~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 273 (337)
T 3p1t_A 200 YGLAGLRLGALFGPSELIAAMKRKQWF----CNVGTLDLHALEAALDND--RAREAHIAKTLAQRRRVADALRGLGYRVA 273 (337)
T ss_dssp TCCTTTCCEEEECCHHHHHHHHTTSCT----TCSCHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHHHHHTTCCBC
T ss_pred ccCcchheEEEEeCHHHHHHHHhhcCC----CCCCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHCcCEEC
Confidence 98656 9999999999988775433 256777777777777632 23456777778888999999999888887
Q ss_pred cCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848 408 HTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK 479 (514)
Q Consensus 408 ~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~ 479 (514)
.+.++++++..++ ..++.+.| +++||.+.++..|.. ++++|++++ +++++++++++|+++++
T Consensus 274 ~~~~~~~~~~~~~---~~~~~~~l-~~~gi~v~~g~~~~~---~~~iRis~~---~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 274 SSEANFVLVENAA---GERTLRFL-RERGIQVKDAGQFGL---HHHIRISIG---REEDNDRLLAALAEYSD 335 (337)
T ss_dssp CCSSSEEEEECTT---THHHHHHH-HHTTEECEEGGGGTC---CSEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred CCCCeEEEEEcCC---HHHHHHHH-HHCCeEEEECccCCC---CCeEEEecC---CHHHHHHHHHHHHHHhh
Confidence 7788888887764 34666777 589999999887543 469999998 79999999999988753
No 97
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.96 E-value=5.7e-28 Score=251.17 Aligned_cols=357 Identities=15% Similarity=0.116 Sum_probs=229.4
Q ss_pred CCceeeeccc---CCCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc--CCCcEEEEecccccc
Q psy16848 16 SNRVTCRLSS---VQYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH--QKEAGLVFTSCYVAN 88 (514)
Q Consensus 16 ~g~~~~d~~~---~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~--~~~~~i~~~sGt~a~ 88 (514)
+|+.++||.+ ..+++ ||++.+++.+++++..... ...+..+...++++++++++ +.++++|++||++|+
T Consensus 42 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~----~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~ 117 (448)
T 3dod_A 42 NGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHST----LLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAM 117 (448)
T ss_dssp TSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCC----CSSSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcc----ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHH
Confidence 7788889865 44555 7999999999998743211 12345678899999999998 456788899999999
Q ss_pred ccchhhcccc---CC---CceEEecCccchh-hhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccC
Q psy16848 89 DSTLFTLGKM---IP---GLHYISDAGNHAS-MIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG 161 (514)
Q Consensus 89 ~~~l~~l~~~---~~---gd~v~~~~~~h~~-~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 161 (514)
..++..+... .. +|.|++.++.|+. ...+....+....... +... .+...
T Consensus 118 ~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~----------~~~~---~~~~~---------- 174 (448)
T 3dod_A 118 EIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHV----------YGPL---MFESY---------- 174 (448)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEEC------------------------------------------CE----------
T ss_pred HHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCcccccc----------ccCC---CCCce----------
Confidence 9999887541 12 4777776666544 3333332221110000 0000 00000
Q ss_pred CccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec
Q psy16848 162 AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~ 241 (514)
.++.+..|.. . +.....+.
T Consensus 175 ---------------------------------------------------------~~~~~~~~~~--~--~~~~~~~~ 193 (448)
T 3dod_A 175 ---------------------------------------------------------KAPIPYVYRS--E--SGDPDECR 193 (448)
T ss_dssp ---------------------------------------------------------EECCCCCTTS--S--SCCHHHHH
T ss_pred ---------------------------------------------------------EeCCCccccC--C--ccchhhhh
Confidence 0000000000 0 00000001
Q ss_pred CCChhHHHHHHhhccCCCceEEEEecCC-CCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCC
Q psy16848 242 HNDVNHLTQVLENMDVKIPKLVAFETVH-SMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDG 315 (514)
Q Consensus 242 ~~d~~~l~~~l~~~~~~~~~~vv~~~~~-nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~ 315 (514)
.+|++.+++.+++. .+++++|++++++ |++|...+ +++|+++|++||++||+||+|+ +|..|..+ ..+..+
T Consensus 194 ~~d~~~le~~l~~~-~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~--a~~~~~ 270 (448)
T 3dod_A 194 DQCLRELAQLLEEH-HEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMF--ACEHEN 270 (448)
T ss_dssp HHHHHHHHHHHHHH-GGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS--GGGGGT
T ss_pred HHHHHHHHHHHHhC-CCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchh--hhhhcC
Confidence 12467788887632 2457899999998 99998776 9999999999999999999999 55554322 123333
Q ss_pred CccCceEEEcCCcccccCC---CeEEEecHHHHHHHHh-------hcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHH
Q psy16848 316 QLHNMDIISGTLGKAFGNI---GGYIVGTKNFIDTIRS-------YAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELR 385 (514)
Q Consensus 316 ~~~~~di~~~S~sK~lg~~---GG~l~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 385 (514)
. .+|++ +|+|++++. .|++++++++++.+.. .... .+++.+++.++++.++|+.+.++. +.
T Consensus 271 ~--~~di~--t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~--~t~~~~~~~~aaa~aal~~~~~~~---~~ 341 (448)
T 3dod_A 271 V--QPDLM--AAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHG--HSYTGNQLGCAVALENLALFESEN---IV 341 (448)
T ss_dssp C--CCSEE--EECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCC--CTTTTCHHHHHHHHHHHHHHHHTT---HH
T ss_pred C--CCCEE--EecccccCCcCceEEEEECHHHHHHhhhccccCCccccc--CCCCcCHHHHHHHHHHHHHHhccc---HH
Confidence 3 67887 789999762 1899999999988865 2222 255789999999999999775444 56
Q ss_pred HHHHHHHHHHHHHHHhC-CCc---cccCCCcEEEEEeCCCcc-----------HHHHHHHHHHhCCeEEecccCCCCCCC
Q psy16848 386 AKHQDIVAYLRNELIQI-GFP---VEHTPSHIIPIKIGNPAL-----------NTKICDMLLKEKGHYVQPINYPTVPVG 450 (514)
Q Consensus 386 ~~~~~~~~~l~~~L~~~-g~~---~~~~~~~~~~i~l~~~~~-----------~~~~~~~Ll~~~GI~v~~~~~~~~~~~ 450 (514)
++++++.+++++.|.++ +++ ...+.+.++++.++.... ..++++.|+ ++||.+.++
T Consensus 342 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~-------- 412 (448)
T 3dod_A 342 EQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMR-ELGMLTRPL-------- 412 (448)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHH-HTTEECCEE--------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHHHHHH-HCCcEEecc--------
Confidence 66666666766666653 222 223457788888765321 367889996 889999764
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 451 EEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 451 ~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
.+++|++++..+|++++++++++|+++++++
T Consensus 413 ~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 443 (448)
T 3dod_A 413 GDVIAFLPPLASTAEELSEMVAIMKQAIHEV 443 (448)
T ss_dssp TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2589999999999999999999999998765
No 98
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.96 E-value=3.4e-29 Score=252.34 Aligned_cols=331 Identities=12% Similarity=0.066 Sum_probs=229.2
Q ss_pred eeee-cccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhh
Q psy16848 19 VTCR-LSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFT 94 (514)
Q Consensus 19 ~~~d-~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~ 94 (514)
+++| |.+++|++ ||.+.+++.++++.++. ..+...++..+...++++++++++|.+..++++||++|+..++.+
T Consensus 4 ~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al~~ 81 (357)
T 3lws_A 4 RLRTSFQQTTGQISGHGKRNVGVLKTAFAAVAD--EMASDQYGTGAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRI 81 (357)
T ss_dssp HHHHHHHTCSEESSBSSCCBHHHHHHHHTTSCT--TCBCEETTEETTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHH
T ss_pred hhhhHHHhhcccccCCCCCCHHHHHHHHHHhhc--ccCcccccCChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHH
Confidence 4565 68888885 78999988888887652 223345566678899999999999999899999999999999888
Q ss_pred ccccCCCc--eEEecCccchhhhhh---hhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848 95 LGKMIPGL--HYISDAGNHASMIQG---IRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL 169 (514)
Q Consensus 95 l~~~~~gd--~v~~~~~~h~~~~~~---~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
+.. +|| .|++++.+|.+.... ....|.
T Consensus 82 ~~~--~gd~~~vi~~~~~~~~~~~~~~~~~~~g~---------------------------------------------- 113 (357)
T 3lws_A 82 WSD--ETDNRTVAYHPLCHLEIHEQDGLKELHPI---------------------------------------------- 113 (357)
T ss_dssp HHH--HHTCCEEEECTTCHHHHSSTTHHHHHSSC----------------------------------------------
T ss_pred Hhh--cCCCcEEEecccceeeeeccchhhhccCc----------------------------------------------
Confidence 876 777 899998888776531 222233
Q ss_pred hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848 170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT 249 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~ 249 (514)
+++.++..+...+.
T Consensus 114 ------------------------------------------------------------------~~~~v~~~~~~~d~ 127 (357)
T 3lws_A 114 ------------------------------------------------------------------ETILVGAADRLMTL 127 (357)
T ss_dssp ------------------------------------------------------------------EEEECSCTTSCCCH
T ss_pred ------------------------------------------------------------------EEEEecCCCCCcCH
Confidence 33333322222222
Q ss_pred HHHhhccCCCceEEEEecCCCCC-ccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEc
Q psy16848 250 QVLENMDVKIPKLVAFETVHSMT-GAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG 325 (514)
Q Consensus 250 ~~l~~~~~~~~~~vv~~~~~npt-G~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~ 325 (514)
+.+++.. +++++++++|+||+ |.+++ +++|.++|++||+++|+|++|.++.....+.+..... ...|+++.
T Consensus 128 ~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~---~~~d~~~~ 202 (357)
T 3lws_A 128 DEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA---GLFDSIYI 202 (357)
T ss_dssp HHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH---TTSSEEEE
T ss_pred HHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH---hcCCEEEE
Confidence 3333332 27899999999998 99887 8999999999999999999987322111111111111 24677889
Q ss_pred CCcccc-cCCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-C
Q psy16848 326 TLGKAF-GNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-G 403 (514)
Q Consensus 326 S~sK~l-g~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g 403 (514)
|+||++ ++.||++++++++++.+......+..+...+...++++..+++... + ..+++.++++++.+.|+++ +
T Consensus 203 s~sK~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~----~~~~~~~~~~~l~~~L~~~~g 277 (357)
T 3lws_A 203 SFYKGLGGIAGAILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRK-D----RMGQYYEQAKQLAEQFNALPG 277 (357)
T ss_dssp ESSSTTCCSSCEEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHHHHTSTT
T ss_pred eccccCCCCceEEEEcCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHhCCC
Confidence 999999 5566999999999988875443221122233444445556666432 2 2334577788999999988 7
Q ss_pred Cccc--cCCCcEEEEEeCCC--ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCC---CCHHHHHHHHHHHHH
Q psy16848 404 FPVE--HTPSHIIPIKIGNP--ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF---HTREMIDKFVTDLLA 476 (514)
Q Consensus 404 ~~~~--~~~~~~~~i~l~~~--~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~---~t~e~id~~~~~l~~ 476 (514)
+.+. ++.++++++.++.. .+..++.+.| .++||.+.++..+. .+..++|++++.. .+++++++++++|++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~g~~~~--~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~ 354 (357)
T 3lws_A 278 VHTTPEVPVSNMFHLHFDGQAADISPKLEQVQ-EETGLGFVGYLVDK--DGYCSTEISVGDAYGELDQQTRDAGFARLRQ 354 (357)
T ss_dssp EEEESSSCSSSEEEEEEESCHHHHHHHHHHHH-HHHCEESCSCCEEC--SSEEEEEEEBCTTGGGSCHHHHHHHHHHHHH
T ss_pred CeeccCCCcceEEEEEecCChHHHHHHHHHHH-HhcCeEEecccccC--CCceEEEEEecchhhhcCHHHHHHHHHHHHH
Confidence 7762 45667888887653 2356777888 48999999886533 3456899998743 578889999998887
Q ss_pred HH
Q psy16848 477 VW 478 (514)
Q Consensus 477 ~l 478 (514)
++
T Consensus 355 al 356 (357)
T 3lws_A 355 AF 356 (357)
T ss_dssp HC
T ss_pred hc
Confidence 54
No 99
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=7.9e-28 Score=245.09 Aligned_cols=325 Identities=18% Similarity=0.116 Sum_probs=227.6
Q ss_pred ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCc--EEEEeccccccccchhhcccc----------
Q psy16848 31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEA--GLVFTSCYVANDSTLFTLGKM---------- 98 (514)
Q Consensus 31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~i~~~sGt~a~~~~l~~l~~~---------- 98 (514)
+|++.+++.+++......+. ...+..+..+++++++++++|.+. .++++||++|+..++.++...
T Consensus 43 ~~~v~~a~~~~~~~~~~~~~---~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~ 119 (397)
T 3f9t_A 43 LPITRKIVDIFLETNLGDPG---LFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLS 119 (397)
T ss_dssp CTHHHHHHHHHTTCCTTSGG---GBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHhhcCCCcc---cChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhccc
Confidence 68888888887765222111 112456778899999999998754 477888999999999887651
Q ss_pred -CCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcC
Q psy16848 99 -IPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHG 177 (514)
Q Consensus 99 -~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (514)
++||.|+++.++|.+...+++..|.+++.++.++.
T Consensus 120 ~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~-------------------------------------------- 155 (397)
T 3f9t_A 120 KNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKED-------------------------------------------- 155 (397)
T ss_dssp CCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCTT--------------------------------------------
T ss_pred CCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCCC--------------------------------------------
Confidence 24999999999999998888877777666554200
Q ss_pred ceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccC
Q psy16848 178 ALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV 257 (514)
Q Consensus 178 ~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~ 257 (514)
+ ..|.+.+++.+++.
T Consensus 156 -------------------~--------------------------------------------~~d~~~l~~~i~~~-- 170 (397)
T 3f9t_A 156 -------------------Y--------------------------------------------TIDEKFVKDAVEDY-- 170 (397)
T ss_dssp -------------------S--------------------------------------------SBCHHHHHHHHHHS--
T ss_pred -------------------C--------------------------------------------cCCHHHHHHHHhhc--
Confidence 0 01455556665542
Q ss_pred CCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCC--Ccc----ccCCCccCceEEEcCCcccc
Q psy16848 258 KIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGA--GIG----ERDGQLHNMDIISGTLGKAF 331 (514)
Q Consensus 258 ~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~--~~~----~~~~~~~~~di~~~S~sK~l 331 (514)
+++++++++++||+|.+.++++|.++|++||+++|+||+|+.+..+..+. .+. +..... +.|+++.|+||++
T Consensus 171 -~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~ 248 (397)
T 3f9t_A 171 -DVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMG 248 (397)
T ss_dssp -CCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTT
T ss_pred -CCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEcccccc
Confidence 47899999999999999999999999999999999999998554322211 000 111112 6799999999998
Q ss_pred cCC-C-eEEEec-HHHHHHHHhhcCceEe------ccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848 332 GNI-G-GYIVGT-KNFIDTIRSYAAGFIF------TTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI 402 (514)
Q Consensus 332 g~~-G-G~l~~~-~~~~~~l~~~~~~~~~------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 402 (514)
+++ + |+++.+ +.+.+.+......+.. ..+.+.....+..+++..+...+.++..++.+++++++.+.|++.
T Consensus 249 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 328 (397)
T 3f9t_A 249 HCPIPSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN 328 (397)
T ss_dssp CCCSSCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 543 2 777665 4455444322111100 011122233334444444445566788899999999999999998
Q ss_pred CCccc-cCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848 403 GFPVE-HTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK 479 (514)
Q Consensus 403 g~~~~-~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~ 479 (514)
++++. .+.++++.+.+++ ..++.+.|. ++||.+.++.. ++++|++++..++++++++++++|+++++
T Consensus 329 g~~~~~~~~~~~~~~~~~~---~~~~~~~l~-~~gi~v~~~~~------~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 329 NFKPVIEPILNIVAIEDED---YKEVCKKLR-DRGIYVSVCNC------VKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp TCCBSSCCSSSEEEEECTT---HHHHHHHHH-HTTCBCEECSS------SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred CCEEEcCCCccEEEEEeCC---HHHHHHHHH-hCCeEEeccCC------CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 87754 4456677777664 678889995 88999987654 46999999988999999999999998764
No 100
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.96 E-value=2e-27 Score=250.27 Aligned_cols=337 Identities=12% Similarity=0.080 Sum_probs=234.1
Q ss_pred hhHHHHHHHHHHHhC-CCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccccccccchhhcc-ccCCCceEE
Q psy16848 32 KGGRKCLGEALEKFG-TGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVANDSTLFTLG-KMIPGLHYI 105 (514)
Q Consensus 32 ~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a~~~~l~~l~-~~~~gd~v~ 105 (514)
+++.+++.+.+.... .....+....|..++.+++++.+.+..| .+.++++++|++++..++.++. . +||.|+
T Consensus 109 ~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~--~gd~Vl 186 (500)
T 3tcm_A 109 ADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRN--EKDGIL 186 (500)
T ss_dssp HHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCS--TTEEEE
T ss_pred HHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCC--CCCEEE
Confidence 446666666666542 1333444455666777777777766654 3456666667778888888876 5 999999
Q ss_pred ecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecc
Q psy16848 106 SDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV 185 (514)
Q Consensus 106 ~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (514)
++.+.|.+...+++..|.+++.++..+.
T Consensus 187 v~~p~y~~~~~~~~~~g~~~~~~~~~~~---------------------------------------------------- 214 (500)
T 3tcm_A 187 VPIPQYPLYSASIALHGGALVPYYLNES---------------------------------------------------- 214 (500)
T ss_dssp EEESCCTHHHHHHHHTTCEEEEEECBTT----------------------------------------------------
T ss_pred EeCCCcHhHHHHHHHcCCEEEEEecccc----------------------------------------------------
Confidence 9999999999999999988887653100
Q ss_pred ccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhcc--CCCceEE
Q psy16848 186 HAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD--VKIPKLV 263 (514)
Q Consensus 186 ~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~--~~~~~~v 263 (514)
.++ ..|++.+++.+++.. ..++++|
T Consensus 215 --------~~~---------------------------------------------~~d~~~l~~~l~~~~~~~~~~k~i 241 (500)
T 3tcm_A 215 --------TGW---------------------------------------------GLETSDVKKQLEDARSRGINVRAL 241 (500)
T ss_dssp --------TTS---------------------------------------------BCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred --------cCC---------------------------------------------CCCHHHHHHHHHHHHhcCCCceEE
Confidence 000 014455555554421 1247889
Q ss_pred EEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC--CCCCccc---cCC--CccCceEEEcCCcccc-c
Q psy16848 264 AFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE--HGAGIGE---RDG--QLHNMDIISGTLGKAF-G 332 (514)
Q Consensus 264 v~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~--~~~~~~~---~~~--~~~~~di~~~S~sK~l-g 332 (514)
++++++||||.+++ +++|+++|++||+++|+||+|..+.++. ...++.. ..+ ......++++||||.+ |
T Consensus 242 vl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g 321 (500)
T 3tcm_A 242 VVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYG 321 (500)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTC
T ss_pred EEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCC
Confidence 99999999999999 6788888999999999999999655432 2222110 011 0112358889999998 6
Q ss_pred CCC---eEEEe---cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHH----------hhhchHHHHHHHHHHHHHHHH
Q psy16848 333 NIG---GYIVG---TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRI----------LSSQEGVELRAKHQDIVAYLR 396 (514)
Q Consensus 333 ~~G---G~l~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~----------~~~~~~~~~~~~~~~~~~~l~ 396 (514)
.+| ||+++ ++++++.+...... ..+.+...+.++..+++. + ....++++++++++++++.
T Consensus 322 ~~G~R~G~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~l~ 397 (500)
T 3tcm_A 322 ECGKRGGYFEITGFSAPVREQIYKIASV---NLCSNITGQILASLVMNPPKASDESYASY-KAEKDGILASLARRAKALE 397 (500)
T ss_dssp CGGGCCEEEEEESCCTTHHHHHHHHHHT---TCCCCHHHHHHHHHHHSCCCSSSTHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred CCccceEEEEEeCCCHHHHHHHHHHHhc---ccCCCHHHHHHHHHHhcCccccchhHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 555 99987 88888888765421 235677777777766641 2 2345678888999999999
Q ss_pred HHHHhC-CCccccCCCcEEE-EEeCCCc------------cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCC
Q psy16848 397 NELIQI-GFPVEHTPSHIIP-IKIGNPA------------LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFH 462 (514)
Q Consensus 397 ~~L~~~-g~~~~~~~~~~~~-i~l~~~~------------~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~ 462 (514)
+.|++. |+.+..+.++++. +.+..+. ....++..+++++||.+.|+..|....+..++|++++ .
T Consensus 398 ~~L~~~~g~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--~ 475 (500)
T 3tcm_A 398 HAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--P 475 (500)
T ss_dssp HHHHTSTTEECCCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--S
T ss_pred HHHhcCCCcEEecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--C
Confidence 999998 8888777776443 3333211 1233455665688999999998775566789999999 7
Q ss_pred CHHHHHHHHHHHHHHHHHc
Q psy16848 463 TREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 463 t~e~id~~~~~l~~~l~~~ 481 (514)
+++++++++++|+++++++
T Consensus 476 ~~e~i~~~i~~l~~~~~~~ 494 (500)
T 3tcm_A 476 QEDKIPAVISRFTVFHEAF 494 (500)
T ss_dssp CTTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 8899999999999988765
No 101
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.96 E-value=8.5e-28 Score=250.10 Aligned_cols=346 Identities=16% Similarity=0.156 Sum_probs=234.2
Q ss_pred CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC---CCcEEEEeccccc
Q psy16848 16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ---KEAGLVFTSCYVA 87 (514)
Q Consensus 16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~i~~~sGt~a 87 (514)
+|+.|+||.++ ..++ ||++++++.+++++... . ....+..+...+++++++++++ .++++|++|||+|
T Consensus 62 ~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~-~---~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA 137 (453)
T 4ffc_A 62 DGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTH-T---CFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEA 137 (453)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSC-C---TTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHH
T ss_pred CCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccc-c---ccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHH
Confidence 77889999654 3454 79999999999988422 1 1223456888999999999985 3568889999999
Q ss_pred cccchhhccccCCCce-EEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccch
Q psy16848 88 NDSTLFTLGKMIPGLH-YISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL 166 (514)
Q Consensus 88 ~~~~l~~l~~~~~gd~-v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
+..+++.+....+++. |..+..+|.....+....+... .+..
T Consensus 138 ~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~-~~~~------------------------------------ 180 (453)
T 4ffc_A 138 VENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSM-PYKS------------------------------------ 180 (453)
T ss_dssp HHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCT-TTTT------------------------------------
T ss_pred HHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCc-cccc------------------------------------
Confidence 9999976542113344 4455555655555444433210 0000
Q ss_pred hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC---
Q psy16848 167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN--- 243 (514)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~--- 243 (514)
.+......+..++.+
T Consensus 181 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 198 (453)
T 4ffc_A 181 --------------------------------------------------------------QFGPFAPEVYRMPASYPL 198 (453)
T ss_dssp --------------------------------------------------------------TSCSCCSSEEEECCCCTT
T ss_pred --------------------------------------------------------------CCCCCCCCcEEeCCCccc
Confidence 000000111122211
Q ss_pred ----------ChhHHHHHHhhccC-CCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCC
Q psy16848 244 ----------DVNHLTQVLENMDV-KIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHG 307 (514)
Q Consensus 244 ----------d~~~l~~~l~~~~~-~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~ 307 (514)
+++.+.+.+++... +++++|++++.++++|.+.+ +++|+++|++||+++|+||+|+ ++..|..+
T Consensus 199 ~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~ 278 (453)
T 4ffc_A 199 RDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWF 278 (453)
T ss_dssp TSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred cCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccc
Confidence 12333344544433 34678888888888888876 9999999999999999999998 55554321
Q ss_pred CCccccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHH
Q psy16848 308 AGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVEL 384 (514)
Q Consensus 308 ~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 384 (514)
..+..+. .+|++ ||+|++++ | |++++++++++.+....... +++.+++.++++.++++.+.++. .
T Consensus 279 --a~~~~~~--~pdi~--t~sK~~~~-G~~~G~~~~~~~i~~~~~~~~~~~--t~~~~~~~~aaa~aal~~~~~~~---~ 346 (453)
T 4ffc_A 279 --ASEHEGI--VPDIV--TMAKGIAG-GMPLSAVTGRAELMDAVYAGGLGG--TYGGNPVTCAAAVAALGVMRELD---L 346 (453)
T ss_dssp --THHHHTC--CCSEE--EECGGGGT-TSSCEEEEEEHHHHTTSCTTSSCC--SSSSCHHHHHHHHHHHHHHHHTT---H
T ss_pred --hhhhcCC--CcchH--hhhhhhcC-CcCeEEEEECHHHHhhhcccCcCC--CCCcCHHHHHHHHHHHHHhhhhh---H
Confidence 1223333 67887 78999987 6 99999999988876554443 55789999999999999775443 5
Q ss_pred HHHHHHHHHHHHHHHHhC-----CCccccCCCcEEEEEeC-------CCccHHHHHHHHHHhCCeEEecccCCCCCCCCc
Q psy16848 385 RAKHQDIVAYLRNELIQI-----GFPVEHTPSHIIPIKIG-------NPALNTKICDMLLKEKGHYVQPINYPTVPVGEE 452 (514)
Q Consensus 385 ~~~~~~~~~~l~~~L~~~-----g~~~~~~~~~~~~i~l~-------~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~ 452 (514)
.++++++.+++++.|+++ .+....+.+.++++.+. +.....++.+.|+ ++||.+.++.. ..+
T Consensus 347 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~-----~~~ 420 (453)
T 4ffc_A 347 PARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPGTLEPDAALTKSIAAEAL-SQGVLILTCGT-----FGN 420 (453)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHH-HTTEECCEECT-----TSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEecCcccCCCHHHHHHHHHHHH-hCCCEEecCCC-----CCC
Confidence 566666666666666543 22233456778888773 2234667888886 89999987543 136
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848 453 KIRLAPTPFHTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 453 ~iRl~~~~~~t~e~id~~~~~l~~~l~~~~ 482 (514)
.+|++++..++++++++++++|+++++++.
T Consensus 421 ~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 450 (453)
T 4ffc_A 421 VIRLLPPLVIGDDLLDEGITALSDIIRAKA 450 (453)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999998753
No 102
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.96 E-value=1.1e-27 Score=244.64 Aligned_cols=333 Identities=18% Similarity=0.195 Sum_probs=235.2
Q ss_pred CCceeeecccC---CCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccccc
Q psy16848 16 SNRVTCRLSSV---QYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVAN 88 (514)
Q Consensus 16 ~g~~~~d~~~~---~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~ 88 (514)
+|+.++|+.++ .++ .+|++.+++.++++.++.. +.. + ..+..++++++++++++ .+++++++||++|+
T Consensus 43 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~--~~~--~-~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~ 117 (395)
T 1vef_A 43 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAM--PQT--L-PTPMRGEFYRTLTAILPPELNRVFPVNSGTEAN 117 (395)
T ss_dssp TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCC--CTT--S-CCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHH
T ss_pred CCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCC--ccc--c-CCHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHH
Confidence 56778899654 344 4789999999999875432 111 1 35788999999999994 55678888899999
Q ss_pred ccchhhccccCCCceEEecCccc-hhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848 89 DSTLFTLGKMIPGLHYISDAGNH-ASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK 167 (514)
Q Consensus 89 ~~~l~~l~~~~~gd~v~~~~~~h-~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
..++.++....+||.|++.++.| .....+++..|.+.+....
T Consensus 118 ~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~------------------------------------- 160 (395)
T 1vef_A 118 EAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPF------------------------------------- 160 (395)
T ss_dssp HHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGG-------------------------------------
T ss_pred HHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCccccccc-------------------------------------
Confidence 98887663112677776666555 4555555555554221000
Q ss_pred HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848 168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH 247 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~ 247 (514)
......+..++..|.+.
T Consensus 161 ---------------------------------------------------------------~p~~~~~~~~~~~d~~~ 177 (395)
T 1vef_A 161 ---------------------------------------------------------------LPLVEPVEFIPYNDVEA 177 (395)
T ss_dssp ---------------------------------------------------------------CSCSSCEEEECTTCHHH
T ss_pred ---------------------------------------------------------------CCCCCCeeEeCCCcHHH
Confidence 00011233344456666
Q ss_pred HHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCc-cccCCCccCceE
Q psy16848 248 LTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGI-GERDGQLHNMDI 322 (514)
Q Consensus 248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~-~~~~~~~~~~di 322 (514)
+++.++ +++++|++++++||||.+.+ +++|.++|++||+++|+||+|+ ++ +..+..+ .+..+ ..+|+
T Consensus 178 l~~~i~----~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~-~~-~~~g~~~~~~~~~--~~~d~ 249 (395)
T 1vef_A 178 LKRAVD----EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT-GM-GRTGKRFAFEHFG--IVPDI 249 (395)
T ss_dssp HHHHCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT-TT-TTTSSSSTHHHHT--CCCSE
T ss_pred HHHHhc----cCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc-CC-ccCCchhHhhhcC--CCCCE
Confidence 666664 45889999999999999887 9999999999999999999999 32 2222111 11222 25687
Q ss_pred EEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q psy16848 323 ISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNEL 399 (514)
Q Consensus 323 ~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 399 (514)
+ ||||++++ | |++++++++++.+...... .+.+.++..++++.++++.+.. ++..++++++++++.+.|
T Consensus 250 ~--s~sK~~~~-g~~~G~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~l~~~l 321 (395)
T 1vef_A 250 L--TLAKALGG-GVPLGVAVMREEVARSMPKGGHG--TTFGGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKL 321 (395)
T ss_dssp E--EECGGGGT-TSSCEEEEEEHHHHHTSCTTSSC--CSSTTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHH
T ss_pred E--EEcccccC-CCceEEEEehHHHHhhhccCCcC--CCcCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHH
Confidence 7 88999987 4 9999988887766542222 2446788899999999987643 347788899999999999
Q ss_pred HhCCCcc---ccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848 400 IQIGFPV---EHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA 476 (514)
Q Consensus 400 ~~~g~~~---~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~ 476 (514)
++++.++ ..+.+.++++.++.. ..++.+.|++++||.+.++ +.+++|++++..++++++++++++|++
T Consensus 322 ~~~~~~~~~~~~~~g~~~~~~~~~~--~~~l~~~l~~~~gi~v~~~-------~~~~iRi~~~~~~~~~~i~~~~~~l~~ 392 (395)
T 1vef_A 322 RAIPSPKIREVRGMGLMVGLELKEK--AAPYIARLEKEHRVLALQA-------GPTVIRFLPPLVIEKEDLERVVEAVRA 392 (395)
T ss_dssp HTSCCTTEEEEEEETTEEEEEESSC--SHHHHHHHHHHHCEECEES-------STTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHhhcCceEEEEEEEEEEEEEEcCh--HHHHHHHHHHHCCeEEecC-------CCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 8875432 234566888888753 5788888843789999863 256999999888999999999999998
Q ss_pred HH
Q psy16848 477 VW 478 (514)
Q Consensus 477 ~l 478 (514)
++
T Consensus 393 ~l 394 (395)
T 1vef_A 393 VL 394 (395)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 103
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.96 E-value=6.7e-28 Score=244.40 Aligned_cols=330 Identities=17% Similarity=0.187 Sum_probs=231.3
Q ss_pred cCCceeeecccCCC---C--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC-CcEEEEecccccc
Q psy16848 15 KSNRVTCRLSSVQY---K--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK-EAGLVFTSCYVAN 88 (514)
Q Consensus 15 ~~g~~~~d~~~~~~---~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~i~~~sGt~a~ 88 (514)
.+|..++|+.++.+ + .+|++.+++.+++++++... .. +. .+...++++++++++|. +++++++||++|+
T Consensus 25 ~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~--~~--y~-~~~~~~l~~~la~~~g~~~~v~~~~g~t~a~ 99 (375)
T 2eh6_A 25 EEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVS--NL--YE-NPWQEELAHKLVKHFWTEGKVFFANSGTESV 99 (375)
T ss_dssp TTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCC--TT--BC-CHHHHHHHHHHHHTSSSCEEEEEESSHHHHH
T ss_pred CCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccC--cc--cC-CHHHHHHHHHHHhhcCCCCeEEEeCchHHHH
Confidence 36778899975432 3 47899999999998754321 11 12 35678999999999998 7778888899998
Q ss_pred ccchhhccc-c---CCC-ceEEecCccchhhhhhh-hcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCC
Q psy16848 89 DSTLFTLGK-M---IPG-LHYISDAGNHASMIQGI-RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGA 162 (514)
Q Consensus 89 ~~~l~~l~~-~---~~g-d~v~~~~~~h~~~~~~~-~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
..++.++.. . .|| |.|++..+.|+.....+ ...+..+.. ..
T Consensus 100 ~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~-~~-------------------------------- 146 (375)
T 2eh6_A 100 EAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFH-KG-------------------------------- 146 (375)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGT-TT--------------------------------
T ss_pred HHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCcccc-CC--------------------------------
Confidence 888865310 1 378 99999888766544322 222211000 00
Q ss_pred ccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC
Q psy16848 163 ICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH 242 (514)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~ 242 (514)
+......+..++.
T Consensus 147 -------------------------------------------------------------------~~~~~~~~~~~~~ 159 (375)
T 2eh6_A 147 -------------------------------------------------------------------FEPLVPGFSYAKL 159 (375)
T ss_dssp -------------------------------------------------------------------TCSCCSSEEEECT
T ss_pred -------------------------------------------------------------------CCCCCCCceeCCC
Confidence 0000011334444
Q ss_pred CChhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCc
Q psy16848 243 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQL 317 (514)
Q Consensus 243 ~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~ 317 (514)
.|.+.+++.+ ++++++|++++++||||.+.+ +++|.++|++||+++|+||+|+ ++..+... . ....+
T Consensus 160 ~d~~~l~~~l----~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~-~-~~~~~-- 231 (375)
T 2eh6_A 160 NDIDSVYKLL----DEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFY-A-YQHFN-- 231 (375)
T ss_dssp TCHHHHHTTC----CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-G-GGGGT--
T ss_pred chHHHHHHHh----cCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcch-h-hhhcC--
Confidence 4555555444 346899999999999999988 9999999999999999999999 54432111 1 11112
Q ss_pred cCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q psy16848 318 HNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAY 394 (514)
Q Consensus 318 ~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 394 (514)
..+|++ ||||++++ | |++++++++++.+....... +.+.++..++++.++++... +..+++++++++
T Consensus 232 ~~~d~~--s~SK~~~~-g~~~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~ 301 (375)
T 2eh6_A 232 LKPDVI--ALAKGLGG-GVPIGAILAREEVAQSFTPGSHGS--TFGGNPLACRAGTVVVDEVE-----KLLPHVREVGNY 301 (375)
T ss_dssp CCCSEE--EECGGGGT-TSCCEEEEEEHHHHTTCCTTSCCC--SSTTCHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred CCCCEE--EEcccccC-CCCeEEEEEcHHHHhhhcCCCCCC--CCCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 137887 77799986 4 99999888877665532222 34668888888888887653 578888999999
Q ss_pred HHHHHHhCCCccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Q psy16848 395 LRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDL 474 (514)
Q Consensus 395 l~~~L~~~g~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l 474 (514)
+.+.|++++.....+.+.++++.++. +..++++.|. ++||.+.++ +.+++|++++..++++++++++++|
T Consensus 302 l~~~L~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~l~-~~gi~~~~~-------~~~~iRi~~~~~~~~~~i~~~~~~l 371 (375)
T 2eh6_A 302 FKEKLKELGKGKVKGRGLMLGLELER--ECKDYVLKAL-EKGLLINCT-------AGKVLRFLPPLIIQKEHIDRAISVL 371 (375)
T ss_dssp HHHHHHHTTSSEEEEETTEEEEECSS--CCHHHHHHHH-HTTEECEEE-------TTTEEEECCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCceEEEEEEEEEEcC--cHHHHHHHHH-HCCCEEecC-------CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 99999987654445567788888864 3578889996 899999864 2468999998889999999999999
Q ss_pred HHH
Q psy16848 475 LAV 477 (514)
Q Consensus 475 ~~~ 477 (514)
+++
T Consensus 372 ~~~ 374 (375)
T 2eh6_A 372 REI 374 (375)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 104
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.96 E-value=3.2e-27 Score=244.14 Aligned_cols=346 Identities=15% Similarity=0.120 Sum_probs=236.6
Q ss_pred CCceeeecccCC---CCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccccc
Q psy16848 16 SNRVTCRLSSVQ---YKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVAN 88 (514)
Q Consensus 16 ~g~~~~d~~~~~---~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~ 88 (514)
+|+.++|+.++. +++ +|++.+++.+++++..... .+. ...+...+++++++++++ .++++|++||++|+
T Consensus 41 ~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~-~~~---~~~~~~~~l~~~la~~~~~~~~~v~~~~ggtea~ 116 (429)
T 1s0a_A 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVM-FGG---ITHAPAIELCRKLVAMTPQPLECVFLADSGSVAV 116 (429)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCC-CSS---EECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHH
T ss_pred CCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccccc-ccc---cCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHH
Confidence 677888997654 454 7999999999998753311 111 124567889999999994 56778888999999
Q ss_pred ccchhhccc-cC----CCceEEecCcc-chhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCC
Q psy16848 89 DSTLFTLGK-MI----PGLHYISDAGN-HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGA 162 (514)
Q Consensus 89 ~~~l~~l~~-~~----~gd~v~~~~~~-h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
..++.++.. .+ |||.|++.++. |.....++...+.... +.. .+. ...+.
T Consensus 117 ~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~-~~~--------~~~---~~~~~------------- 171 (429)
T 1s0a_A 117 EVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNS-MHS--------LWK---GYLPE------------- 171 (429)
T ss_dssp HHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTT-TGG--------GGT---TTSCC-------------
T ss_pred HHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchh-hcc--------ccc---CCCCC-------------
Confidence 988876531 11 58888777764 5444444444332110 000 000 00000
Q ss_pred ccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEe--
Q psy16848 163 ICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIY-- 240 (514)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v-- 240 (514)
...+.+
T Consensus 172 ------------------------------------------------------------------------~~~~~~~~ 179 (429)
T 1s0a_A 172 ------------------------------------------------------------------------NLFAPAPQ 179 (429)
T ss_dssp ------------------------------------------------------------------------CEEECCCC
T ss_pred ------------------------------------------------------------------------ceEeCCCc
Confidence 000000
Q ss_pred -------cCCChhHHHHHHhhccCCCceEEEEecC-CCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCC
Q psy16848 241 -------RHNDVNHLTQVLENMDVKIPKLVAFETV-HSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHG 307 (514)
Q Consensus 241 -------~~~d~~~l~~~l~~~~~~~~~~vv~~~~-~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~ 307 (514)
...|++.+++.+++. .+++++|+++++ +||+|...+ +++|.++|++||+++|+||+|+ ++..|..+
T Consensus 180 ~~~~~~~~~~d~~~l~~~l~~~-~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~ 258 (429)
T 1s0a_A 180 SRMDGEWDERDMVGFARLMAAH-RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF 258 (429)
T ss_dssp SBC-CCCCGGGGHHHHHHHHHH-TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred ccccccchHHHHHHHHHHHHhC-CCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHH
Confidence 013667777777643 235788888888 899998776 9999999999999999999998 55443211
Q ss_pred CCccccCCCccCceEEEcCCcccccCC--C-eEEEecHHHHHHHHhhc-Cc--eEeccCCcHHHHHHHHHHHHHhhhchH
Q psy16848 308 AGIGERDGQLHNMDIISGTLGKAFGNI--G-GYIVGTKNFIDTIRSYA-AG--FIFTTSLPPTVLAGAREAIRILSSQEG 381 (514)
Q Consensus 308 ~~~~~~~~~~~~~di~~~S~sK~lg~~--G-G~l~~~~~~~~~l~~~~-~~--~~~~~~~~~~~~~a~~~~l~~~~~~~~ 381 (514)
..+..+ ..+|++ |+||+++++ + |++++++++++.+.... .. ...+.+.+++.++++.++++.+.++
T Consensus 259 --~~~~~~--~~~d~~--t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~-- 330 (429)
T 1s0a_A 259 --ACEHAE--IAPDIL--CLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESG-- 330 (429)
T ss_dssp --GGGGGT--CCCSEE--EECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTC--
T ss_pred --HhhhcC--CCCCEE--EecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHhC--
Confidence 112222 257877 789999762 2 99999999988887531 11 1124567899999999999977543
Q ss_pred HHHHHHHHHHHHHHHHHHHhC----CCccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEE
Q psy16848 382 VELRAKHQDIVAYLRNELIQI----GFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLA 457 (514)
Q Consensus 382 ~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~ 457 (514)
+..++++++++++.+.|+++ ++....+.+.++++.++...+..++.+.|+ ++||.+.+. .+++|++
T Consensus 331 -~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~-~~Gi~v~~~--------~~~iRis 400 (429)
T 1s0a_A 331 -DWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAALQKFFV-EQGVWIRPF--------GKLIYLM 400 (429)
T ss_dssp -HHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEETTEEEEEESSCBCHHHHHHHHH-HTTEECCCB--------TTEEEEC
T ss_pred -CHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEeeEEEEEEECCcccHHHHHHHHH-HCCCEEecc--------CCEEEEE
Confidence 36788888899999999875 222234456788888875455778999996 899999752 2589999
Q ss_pred eCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 458 PTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 458 ~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
++..+|++|+++++++|+++++++
T Consensus 401 ~~~~~t~e~i~~~~~~l~~~~~~~ 424 (429)
T 1s0a_A 401 PPYIILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhh
Confidence 998899999999999999987554
No 105
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.96 E-value=8e-28 Score=243.83 Aligned_cols=328 Identities=11% Similarity=0.029 Sum_probs=229.2
Q ss_pred ceeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC---cEEEE-eccccccccchh
Q psy16848 18 RVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE---AGLVF-TSCYVANDSTLF 93 (514)
Q Consensus 18 ~~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~i~~-~sGt~a~~~~l~ 93 (514)
++..+|..+.+.-+|++.+++.+++.. .. .....+..+++++++++++|.+ ..+++ +||++|+..++.
T Consensus 18 ~~~~~~~pgp~~~~~~v~~a~~~~~~~----~~----~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~ 89 (376)
T 3f0h_A 18 QGMLNFTVGPVMSSEEVRAIGAEQVPY----FR----TTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVM 89 (376)
T ss_dssp SSCEECSSSSCCCCHHHHHHHTSCCCC----CS----SHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHH
T ss_pred cCceeecCCCCCCcHHHHHHhcCCCCC----CC----CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHH
Confidence 455666655555678888777664421 11 1123467789999999999875 45554 566999999998
Q ss_pred hccccCCCceEEecCccchhhh--hhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848 94 TLGKMIPGLHYISDAGNHASMI--QGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE 171 (514)
Q Consensus 94 ~l~~~~~gd~v~~~~~~h~~~~--~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
++.. +||.|++..+.|.+.. ..+...|.
T Consensus 90 ~~~~--~gd~vi~~~~~~~~~~~~~~~~~~g~------------------------------------------------ 119 (376)
T 3f0h_A 90 NCFT--KKDKVLVIDGGSFGHRFVQLCEIHEI------------------------------------------------ 119 (376)
T ss_dssp HHCC--TTCCEEEEESSHHHHHHHHHHHHTTC------------------------------------------------
T ss_pred hccC--CCCeEEEEeCChhhHHHHHHHHHcCC------------------------------------------------
Confidence 8865 9999998876554422 12222333
Q ss_pred hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC-ChhHHHH
Q psy16848 172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN-DVNHLTQ 250 (514)
Q Consensus 172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~ 250 (514)
+++.++.+ +...+.+
T Consensus 120 ----------------------------------------------------------------~~~~v~~~~~~~~d~~ 135 (376)
T 3f0h_A 120 ----------------------------------------------------------------PYVALKLEHGKKLTKE 135 (376)
T ss_dssp ----------------------------------------------------------------CEEEEECCTTCCCCHH
T ss_pred ----------------------------------------------------------------ceEEEeCCCCCCCCHH
Confidence 33333311 1222223
Q ss_pred HHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccc
Q psy16848 251 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKA 330 (514)
Q Consensus 251 ~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~ 330 (514)
.+++..+++++++++++++||+|.++|+++|.++|++||+++|+|++++.+... + +.. ..+.|++++|+||+
T Consensus 136 ~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~-----~-~~~--~~~~d~~~~s~~K~ 207 (376)
T 3f0h_A 136 KLYEYDNQNFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADP-----F-NMN--ECGADVMITGSQKV 207 (376)
T ss_dssp HHHTTTTSCCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSC-----C-CHH--HHTCSEEEEETTTT
T ss_pred HHHHhhccCceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCcc-----c-ccc--ccCccEEEecCccc
Confidence 344444567899999999999999999999999999999999999999865421 1 111 23578999999999
Q ss_pred cc-CCC-eEEEecHHHHHHHHhhcCc-e--------------EeccCCcHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHH
Q psy16848 331 FG-NIG-GYIVGTKNFIDTIRSYAAG-F--------------IFTTSLPPTVLAGAREAIRILSSQ-EGVELRAKHQDIV 392 (514)
Q Consensus 331 lg-~~G-G~l~~~~~~~~~l~~~~~~-~--------------~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~ 392 (514)
++ +.| |+++.++++++.+...... + ....+.+...++++.++++.+.+. ++++++++.++++
T Consensus 208 l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~ 287 (376)
T 3f0h_A 208 LACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQA 287 (376)
T ss_dssp TCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred ccCCCceEEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 98 556 8999999999888753211 0 001234555557777788876555 5788999999999
Q ss_pred HHHHHHHHhCCCccccCC-C-cEEEEEeCCCccHHHHHHHHHHhC-CeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHH
Q psy16848 393 AYLRNELIQIGFPVEHTP-S-HIIPIKIGNPALNTKICDMLLKEK-GHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDK 469 (514)
Q Consensus 393 ~~l~~~L~~~g~~~~~~~-~-~~~~i~l~~~~~~~~~~~~Ll~~~-GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~ 469 (514)
+++.+.|+++++.+..+. . .++.+. +...+..++.+.|. ++ ||.++++.. ....+++|++++..+|++|+++
T Consensus 288 ~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~-~~~gi~v~~g~~---~~~~~~lRis~~~~~t~e~i~~ 362 (376)
T 3f0h_A 288 ADFRAKIKDLPFELVSESPANGVTSVH-PTTANAYDIFLKLK-DEYGIWICPNGG---EMKDTIFRVGHIGALTHEDNTT 362 (376)
T ss_dssp HHHHHHTTTSSEEECCSSBBTTEEEEE-ESSSCHHHHHHHHH-HHSSEECEECCG---GGTTTCEEEECCSSCCHHHHHH
T ss_pred HHHHHHHHHcCCccCccccCceEEEEe-CCCCCHHHHHHHHH-HhCCEEEecCcc---ccCCCEEEEecCCCCCHHHHHH
Confidence 999999998876654432 2 244343 34456788999997 65 999987742 2245799999998899999999
Q ss_pred HHHHHHHHHHH
Q psy16848 470 FVTDLLAVWKS 480 (514)
Q Consensus 470 ~~~~l~~~l~~ 480 (514)
++++|++++++
T Consensus 363 ~~~~l~~~l~~ 373 (376)
T 3f0h_A 363 LVNAFKDLQKR 373 (376)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 106
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.96 E-value=1.4e-27 Score=244.62 Aligned_cols=339 Identities=13% Similarity=0.081 Sum_probs=230.5
Q ss_pred CCceeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhH--cC-C-C-cEEEEecccccc
Q psy16848 16 SNRVTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKL--HQ-K-E-AGLVFTSCYVAN 88 (514)
Q Consensus 16 ~g~~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~--~~-~-~-~~i~~~sGt~a~ 88 (514)
.|..++|+..+++ ..+|.+.+++.++++..+.... ...|+......++++.++++ .| . + ..++++++++++
T Consensus 31 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~--~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al 108 (400)
T 3asa_A 31 PQHTVINLSIGDTTQPLNASVAEAFASSIARLSSPTT--CRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDL 108 (400)
T ss_dssp TTSCCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSC--CCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHH
T ss_pred CCCceEeccCCCCCCCCCHHHHHHHHHHHhccccccc--ccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHH
Confidence 3567899976654 3478999999999987543211 11122223457888888888 46 2 3 344444455666
Q ss_pred ccchhhccccCCCceEEecCccchhhhhhhhcCCCC-eeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848 89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAP-KIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK 167 (514)
Q Consensus 89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~-~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
..+ ..+.. +||.|+++.+.|.+....++..|.+ ++.++..+.+.+
T Consensus 109 ~~~-~~~~~--~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~------------------------------- 154 (400)
T 3asa_A 109 FRL-LSFFG--PNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAF------------------------------- 154 (400)
T ss_dssp HHH-HHHHC--SSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTT-------------------------------
T ss_pred HHH-HHHcC--CCCEEEECCCCcHHHHHHHHHcCCcceEecccchhcCc-------------------------------
Confidence 554 34544 8999999999999988888777777 665543210000
Q ss_pred HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848 168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH 247 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~ 247 (514)
..++
T Consensus 155 --------------------------------------------------------------------------~~~l-- 158 (400)
T 3asa_A 155 --------------------------------------------------------------------------FPEF-- 158 (400)
T ss_dssp --------------------------------------------------------------------------CCCC--
T ss_pred --------------------------------------------------------------------------ccCh--
Confidence 0011
Q ss_pred HHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCceEE
Q psy16848 248 LTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMDII 323 (514)
Q Consensus 248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~di~ 323 (514)
++. ++++++++++++||||.++| +++|.++|+++|+++|+||+|+ +...+.....+..... ..+.+++
T Consensus 159 -----~~~--~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~~~~i~ 230 (400)
T 3asa_A 159 -----PED--THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPD-ARFCAIE 230 (400)
T ss_dssp -----CTT--CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTT-GGGTEEE
T ss_pred -----hhc--cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCC-CCCceEE
Confidence 011 35789999999999999999 6789999999999999999999 4332211111211111 1245799
Q ss_pred EcCCcccccCCC---eEEEecHHH-------HHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q psy16848 324 SGTLGKAFGNIG---GYIVGTKNF-------IDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVA 393 (514)
Q Consensus 324 ~~S~sK~lg~~G---G~l~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 393 (514)
++|+||++|.+| ||+++++++ ++.+........+ .+.+.+.+.++.++++.. ++++.+++++++++
T Consensus 231 ~~s~sK~~g~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~ 306 (400)
T 3asa_A 231 INSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTF-NGASIPAQEAGVAGLSIL---PQLEAIHYYRENSD 306 (400)
T ss_dssp EEECCGGGTTTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHT---TTCHHHHHHHHHHH
T ss_pred EecchhhcCCcchheeEEeeChhhccchhhhHHHHHHHHhccCc-cCCChHHHHHHHHHhCcH---HHHHHHHHHHHHHH
Confidence 999999998667 999998887 5655432222111 146788888888888753 45568889999999
Q ss_pred HHHHHHHhCCCccccC-CCcEEEEE-eCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHH
Q psy16848 394 YLRNELIQIGFPVEHT-PSHIIPIK-IGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFV 471 (514)
Q Consensus 394 ~l~~~L~~~g~~~~~~-~~~~~~i~-l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~ 471 (514)
++.+.|++.|+.+..+ .+.++++. +++..+..++.+.|++++||.+.++..|. +.+.+++|+++ ..+++++++++
T Consensus 307 ~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~-~~~~~~iRis~--~~~~e~i~~~l 383 (400)
T 3asa_A 307 LLRKALLATGFEVFGGEHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFG-RSGSGFVRFSS--LGKREDILAAC 383 (400)
T ss_dssp HHHHHHHHTTCEEEECSSSSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGC-GGGTTCEEEEC--CSCHHHHHHHH
T ss_pred HHHHHHHHCCCeeeCCCCceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhC-CCCCCEEEEEe--eCCHHHHHHHH
Confidence 9999999988877655 45678888 77544556788888656699999987654 33467899995 46899999999
Q ss_pred HHHHHHHHHc
Q psy16848 472 TDLLAVWKSL 481 (514)
Q Consensus 472 ~~l~~~l~~~ 481 (514)
++|++++++.
T Consensus 384 ~~l~~~~~~~ 393 (400)
T 3asa_A 384 ERLQMAPALQ 393 (400)
T ss_dssp HHHHC-----
T ss_pred HHHHHHHHhh
Confidence 9999888664
No 107
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.96 E-value=1.6e-27 Score=246.80 Aligned_cols=346 Identities=20% Similarity=0.207 Sum_probs=235.0
Q ss_pred cCCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-CCCcEEEEecccccc
Q psy16848 15 KSNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-QKEAGLVFTSCYVAN 88 (514)
Q Consensus 15 ~~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~i~~~sGt~a~ 88 (514)
.+|+.++||.++ .+++ ||++.+++.+++++ +... .+..+...++++++++++ +.+++++++||++|+
T Consensus 53 ~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~-~~~~------~~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~ 125 (434)
T 2epj_A 53 VDGARIVDLVLAYGPLILGHKHPRVLEAVEEALAR-GWLY------GAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEAT 125 (434)
T ss_dssp TTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHT-CSCC------SSCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHH
T ss_pred CCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHh-CCCC------CCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHH
Confidence 367788999765 4554 79999999999987 3211 124577889999999999 778889999999999
Q ss_pred ccchhhccc-cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848 89 DSTLFTLGK-MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK 167 (514)
Q Consensus 89 ~~~l~~l~~-~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
..++..... .++++.|+.++.+|.....++...+.....+.. |.
T Consensus 126 ~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~-----------------p~------------------ 170 (434)
T 2epj_A 126 MTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGV-----------------PT------------------ 170 (434)
T ss_dssp HHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CE-----------------ES------------------
T ss_pred HHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCC-----------------CC------------------
Confidence 999987211 224455555555555444343333321110000 00
Q ss_pred HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848 168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH 247 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~ 247 (514)
..|+ -...+..+..++.+|.+.
T Consensus 171 ---------------------------~~g~-------------------------------~~~~~~~~~~~~~~d~~~ 192 (434)
T 2epj_A 171 ---------------------------SAGV-------------------------------PEAVARLTLVTPYNDVEA 192 (434)
T ss_dssp ---------------------------STTC-------------------------------CHHHHTTEEEEETTCHHH
T ss_pred ---------------------------CCCC-------------------------------CCcccCceEecCCCCHHH
Confidence 0000 000012355566678888
Q ss_pred HHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccc-cCCCCCCccccCCCccCceE
Q psy16848 248 LTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGL-YGEHGAGIGERDGQLHNMDI 322 (514)
Q Consensus 248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~-~g~~~~~~~~~~~~~~~~di 322 (514)
+++.+++.. +++++|++++++|++|.+.+ +++|+++|++||+++|+||+|+ |+ .|.. ...+..+. .+|+
T Consensus 193 le~~l~~~~-~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~~g~~--~~~~~~~~--~~di 266 (434)
T 2epj_A 193 LERVFAEYG-DRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVT-GFRLGLE--GAQGYFNI--EGDI 266 (434)
T ss_dssp HHHHHHHHG-GGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTT-TTTSSTT--HHHHHHTC--CCSE
T ss_pred HHHHHHhCC-CCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchh-ceeCCcc--hhhHHhCC--CCCe
Confidence 888887532 35789999999999999887 9999999999999999999999 33 2221 11122232 5788
Q ss_pred EEcCCcccccC--CCeEEEecHHHHHHHHhhcCc-eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q psy16848 323 ISGTLGKAFGN--IGGYIVGTKNFIDTIRSYAAG-FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNEL 399 (514)
Q Consensus 323 ~~~S~sK~lg~--~GG~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 399 (514)
+ ||||++++ ++|++++++++++.+...... ...+.+.+++.++++.++++.+.++. ..++++++.+++.+.|
T Consensus 267 ~--s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~---~~~~~~~~~~~l~~~L 341 (434)
T 2epj_A 267 I--VLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEP---VYSVSREAAKALEEAA 341 (434)
T ss_dssp E--EEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHHH
T ss_pred e--eecchhcCCcceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHH
Confidence 7 89999987 339999999888776542211 11244788999999999999875433 6777888888888888
Q ss_pred HhC----CCcc-ccCCCcEEEEEeCCC-------------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCC
Q psy16848 400 IQI----GFPV-EHTPSHIIPIKIGNP-------------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF 461 (514)
Q Consensus 400 ~~~----g~~~-~~~~~~~~~i~l~~~-------------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~ 461 (514)
+++ ++.. ..+.+.++++.+++. ....++.+.|+ ++||.+.++.. ..+|+ +..
T Consensus 342 ~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~-------~~~~~--~~~ 411 (434)
T 2epj_A 342 SEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEML-RRGVFIAPSNL-------EAVFT--GLP 411 (434)
T ss_dssp HHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHH-HTTEECCSSTT-------SCEEC--CTT
T ss_pred HHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHH-HCCeEEeccCC-------CcEEE--ecc
Confidence 764 5432 345677888888651 23567888896 89999986532 23454 456
Q ss_pred CCHHHHHHHHHHHHHHHHHc
Q psy16848 462 HTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 462 ~t~e~id~~~~~l~~~l~~~ 481 (514)
+|++++++++++|+++++++
T Consensus 412 ~t~e~i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 412 HQGEALEIAVEGLRSSLKTV 431 (434)
T ss_dssp CSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999988764
No 108
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.96 E-value=2.5e-27 Score=244.51 Aligned_cols=343 Identities=15% Similarity=0.106 Sum_probs=231.0
Q ss_pred CCceeeecccCC---CCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-C-C-CcEEEEeccccc
Q psy16848 16 SNRVTCRLSSVQ---YKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-Q-K-EAGLVFTSCYVA 87 (514)
Q Consensus 16 ~g~~~~d~~~~~---~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~-~-~~~i~~~sGt~a 87 (514)
+|+.++|+.++. +++ +|++.+++.+++++.+... ..++..+...++++.+++++ + . +.+++++||++|
T Consensus 39 ~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~----~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a 114 (426)
T 1sff_A 39 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTC----FQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEA 114 (426)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCC----TTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHH
T ss_pred CCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCcc----ccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHH
Confidence 677888996554 554 7899999999987644321 12334577889999999999 5 4 456777888999
Q ss_pred cccchh---hccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCcc
Q psy16848 88 NDSTLF---TLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC 164 (514)
Q Consensus 88 ~~~~l~---~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
+..++. ++.. +|+.|+.++.+|.....+++..+.+.. ++. .-.|..
T Consensus 115 ~~~~~~~a~~~~~--~~~vi~~~p~y~~~~~~~~~~~g~~~~-~~~--------------~~~~~~-------------- 163 (426)
T 1sff_A 115 VENAVKIARAATK--RSGTIAFSGAYHGRTHYTLALTGKVNP-YSA--------------GMGLMP-------------- 163 (426)
T ss_dssp HHHHHHHHHHHHT--CCEEEEETTCCCCSSHHHHHHSSCCTT-TTT--------------TSCCCC--------------
T ss_pred HHHHHHHHHHhhC--CCeEEEECCCcCCCchHhhhhcCCccc-ccc--------------ccCCCC--------------
Confidence 988887 4544 775554555566666666666654310 000 000000
Q ss_pred chhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec--C
Q psy16848 165 PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR--H 242 (514)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~--~ 242 (514)
..++.++ .
T Consensus 164 ----------------------------------------------------------------------~~v~~v~~~~ 173 (426)
T 1sff_A 164 ----------------------------------------------------------------------GHVYRALYPC 173 (426)
T ss_dssp ----------------------------------------------------------------------SSEEEECCCB
T ss_pred ----------------------------------------------------------------------CCcEEeCCCc
Confidence 0000111 0
Q ss_pred ---C-----ChhHHHHHHhhcc-CCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCC
Q psy16848 243 ---N-----DVNHLTQVLENMD-VKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGA 308 (514)
Q Consensus 243 ---~-----d~~~l~~~l~~~~-~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~ 308 (514)
+ |++.+++.+++.. .+++++|++++.+|++|...+ +++|.++|++||+++|+||+|+ ++..|...
T Consensus 174 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~- 252 (426)
T 1sff_A 174 PLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLF- 252 (426)
T ss_dssp GGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-
T ss_pred cccccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchh-
Confidence 0 4555666665311 134778888665444996666 9999999999999999999999 33322111
Q ss_pred CccccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHH
Q psy16848 309 GIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELR 385 (514)
Q Consensus 309 ~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 385 (514)
..+..+ ..+|++ ||||++++ | |++++++++++.+...... .+.+.+++.++++.++++.+.++. ..
T Consensus 253 -~~~~~~--~~~di~--s~sK~~~~-GlriG~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~a~~aal~~~~~~~---~~ 321 (426)
T 1sff_A 253 -AMEQMG--VAPDLT--TFAKSIAG-GFPLAGVTGRAEVMDAVAPGGLG--GTYAGNPIACVAALEVLKVFEQEN---LL 321 (426)
T ss_dssp -GGGGTT--SCCSEE--EECGGGGT-SSCCEEEEEEHHHHTTSCTTSBC--CSSSSCHHHHHHHHHHHHHHHHTT---HH
T ss_pred -hhhhcC--CCCCEE--EEcccccC-CCceEEEEEcHHHHhhhccCCcC--cCCCCCHHHHHHHHHHHHHHHhcC---HH
Confidence 112222 257777 99999998 8 9999999888776542222 245678999999999998775433 66
Q ss_pred HHHHHHHHHHHHHHHhCC--Cc---cccCCCcEEEEEeC--------CCccHHHHHHHHHHhCCeEEecccCCCCCCCCc
Q psy16848 386 AKHQDIVAYLRNELIQIG--FP---VEHTPSHIIPIKIG--------NPALNTKICDMLLKEKGHYVQPINYPTVPVGEE 452 (514)
Q Consensus 386 ~~~~~~~~~l~~~L~~~g--~~---~~~~~~~~~~i~l~--------~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~ 452 (514)
++++++++++.+.|++++ ++ ...+.+.++++.+. +..+..++.+.|+ ++||.+.++..+ .+
T Consensus 322 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~~~~~-----~~ 395 (426)
T 1sff_A 322 QKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARAR-DKGLILLSCGPY-----YN 395 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHH-HTTEECEEESTT-----SC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHH-HCCcEEecCCCC-----CC
Confidence 777888888888877642 33 22345778888874 2234677889996 889999987641 46
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 453 KIRLAPTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 453 ~iRl~~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
++|++++..++++++++++++|+++++++
T Consensus 396 ~iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 396 VLRILVPLTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 89999988899999999999999998765
No 109
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.96 E-value=1.8e-27 Score=244.62 Aligned_cols=333 Identities=15% Similarity=0.141 Sum_probs=236.4
Q ss_pred CCceeeecccCCCCCChhHHHHHHHHHHH-hCCCCCCcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccch
Q psy16848 16 SNRVTCRLSSVQYKVPKGGRKCLGEALEK-FGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTL 92 (514)
Q Consensus 16 ~g~~~~d~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l 92 (514)
++..++|+++.. ..+|.+.+++.+++.. ++.....+....+..+..+++++++++++|.+ ++++++||++++..++
T Consensus 27 ~~~~yld~~~~~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al 105 (416)
T 1qz9_A 27 EGVIYLDGNSLG-ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVL 105 (416)
T ss_dssp TTCEECCTTTSC-CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHH
T ss_pred CCeEeecCCCcC-CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHH
Confidence 456677776554 3478999999999975 22211111112234577889999999999875 5566666777777777
Q ss_pred hhcccc----CCCce-EEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848 93 FTLGKM----IPGLH-YISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK 167 (514)
Q Consensus 93 ~~l~~~----~~gd~-v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
.++... .+||. |++++.+|.++..++...
T Consensus 106 ~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~---------------------------------------------- 139 (416)
T 1qz9_A 106 SAALRVQATRSPERRVIVTETSNFPTDLYIAEGL---------------------------------------------- 139 (416)
T ss_dssp HHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHH----------------------------------------------
T ss_pred HhhcccccccCCCCcEEEEcCCCCCchHHHHHHH----------------------------------------------
Confidence 766412 48885 777788998876443210
Q ss_pred HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhC--CCCEEEecCCCh
Q psy16848 168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNS--SAPKIIYRHNDV 245 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~--g~~~~~v~~~d~ 245 (514)
.... |++++.++. .
T Consensus 140 --------------------------------------------------------------~~~~~~g~~~~~v~~--~ 155 (416)
T 1qz9_A 140 --------------------------------------------------------------ADMLQQGYTLRLVDS--P 155 (416)
T ss_dssp --------------------------------------------------------------HHHHCSSCEEEEESS--G
T ss_pred --------------------------------------------------------------HHHhcCCceEEEeCc--H
Confidence 0001 334444444 4
Q ss_pred hHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEc
Q psy16848 246 NHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG 325 (514)
Q Consensus 246 ~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~ 325 (514)
+.+++.+ ++++++|++++++||||.+.|+++|.++|++||+++|+|++|++|... + +.. ..++|++++
T Consensus 156 ~~l~~~i----~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~-----~-~~~--~~~~d~~~~ 223 (416)
T 1qz9_A 156 EELPQAI----DQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVP-----V-DLH--QAGADYAIG 223 (416)
T ss_dssp GGHHHHC----STTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSC-----C-CHH--HHTCSEEEE
T ss_pred HHHHHHh----CCCceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcC-----C-Chh--hcCCCEEEe
Confidence 4444444 346899999999999999999999999999999999999999865431 1 111 225799999
Q ss_pred CCccccc-C-CC-eEEEecHHHHHHHHhhcCce--------------------Ee-ccCCcHHHHHHHHHHHHHhhhchH
Q psy16848 326 TLGKAFG-N-IG-GYIVGTKNFIDTIRSYAAGF--------------------IF-TTSLPPTVLAGAREAIRILSSQEG 381 (514)
Q Consensus 326 S~sK~lg-~-~G-G~l~~~~~~~~~l~~~~~~~--------------------~~-~~~~~~~~~~a~~~~l~~~~~~~~ 381 (514)
|+||+++ + .+ |++++++++++.+.....++ .+ ..+.+...++++.++++.+..+++
T Consensus 224 s~~K~l~~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~ 303 (416)
T 1qz9_A 224 CTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDM 303 (416)
T ss_dssp CSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCH
T ss_pred cCcccCCCCCCCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCH
Confidence 9999973 3 44 89999988876665432110 01 124567777888888988765678
Q ss_pred HHHHHHHHHHHHHHHHHHHhC----CCccccCC-----CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCc
Q psy16848 382 VELRAKHQDIVAYLRNELIQI----GFPVEHTP-----SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEE 452 (514)
Q Consensus 382 ~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~-----~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~ 452 (514)
++++++++++++++.+.|++. |+.+..+. ++++++.+++ ..++.+.|. ++||.+.. .+.+
T Consensus 304 ~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~l~-~~gi~~~~-------~~~~ 372 (416)
T 1qz9_A 304 ASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE---GYAVIQALI-DRGVIGDY-------REPR 372 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT---HHHHHHHHH-TTTEECEE-------ETTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCC---HHHHHHHHH-hCCcEecc-------CCCC
Confidence 889999999999999999886 77766552 5677888764 678889995 89998742 1356
Q ss_pred EEEEEeC-CCCCHHHHHHHHHHHHHHHHHcC
Q psy16848 453 KIRLAPT-PFHTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 453 ~iRl~~~-~~~t~e~id~~~~~l~~~l~~~~ 482 (514)
++|++++ ..++++|+++++++|++++++..
T Consensus 373 ~lRis~~~~~~t~~~i~~~~~~l~~~~~~~~ 403 (416)
T 1qz9_A 373 IMRFGFTPLYTTFTEVWDAVQILGEILDRKT 403 (416)
T ss_dssp EEEEECCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEeCcccCCCHHHHHHHHHHHHHHHhccc
Confidence 8999998 48899999999999999998753
No 110
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.96 E-value=2.9e-27 Score=237.61 Aligned_cols=320 Identities=14% Similarity=0.117 Sum_probs=234.5
Q ss_pred CCceeeecccCC-CC-CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccc
Q psy16848 16 SNRVTCRLSSVQ-YK-VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDST 91 (514)
Q Consensus 16 ~g~~~~d~~~~~-~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~ 91 (514)
+|+.++||+++. .+ .+|++.+++.+++... ..+ +.... .+++++++++++.+ ..+++++|++++..+
T Consensus 13 ~g~~~id~~~~~~~~~~~~~v~~a~~~~~~~~-~~y-------~~~~~-~~lr~~la~~~~~~~~~i~~t~g~~~al~~~ 83 (350)
T 3fkd_A 13 LSSEIVNFSTTVWTDGDKDHLEKHLVENLNCI-RHY-------PEPDA-GTLRQMLAKRNSVDNNAILVTNGPTAAFYQI 83 (350)
T ss_dssp ---CCEECSCCSCCCSCCHHHHHHHHHTGGGG-GSC-------CCTTC-HHHHHHHHHHTTCCGGGEEEESHHHHHHHHH
T ss_pred ccccEEEccCCCCCCCCCHHHHHHHHHhHhHH-hcC-------CCCcH-HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHH
Confidence 567899997653 33 4789999988877321 111 11122 68999999999864 566667778888888
Q ss_pred hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccC-CChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848 92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRH-NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 170 (514)
Q Consensus 92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
+.++. ||.|+++.++|.+....++..|.+++.++. ++.+.+
T Consensus 84 ~~~l~----gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~---------------------------------- 125 (350)
T 3fkd_A 84 AQAFR----GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDIGEA---------------------------------- 125 (350)
T ss_dssp HHHTT----TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCGGGS----------------------------------
T ss_pred HHHHC----CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCccccC----------------------------------
Confidence 87764 899999999999998888888877766554 211100
Q ss_pred hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848 171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ 250 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ 250 (514)
T Consensus 126 -------------------------------------------------------------------------------- 125 (350)
T 3fkd_A 126 -------------------------------------------------------------------------------- 125 (350)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcC-CEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcc
Q psy16848 251 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHG-ALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK 329 (514)
Q Consensus 251 ~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~g-v~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK 329 (514)
..++++++++++++||||.++|.+++.++++.++ .++|+||+|+........ ...... ..+.+++++||||
T Consensus 126 -----~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~--~~~~~~-~~~~~i~~~S~sK 197 (350)
T 3fkd_A 126 -----DFSNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVI--RPADIK-GRKNLVMVYSFSH 197 (350)
T ss_dssp -----CCTTCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCC--CGGGGT-TCSSEEEEEESHH
T ss_pred -----ccCCCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccCcch--hhHHhh-cCCCEEEEecCch
Confidence 0035789999999999999999999999999886 799999999843322111 111111 2367799999999
Q ss_pred cccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCc
Q psy16848 330 AFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFP 405 (514)
Q Consensus 330 ~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 405 (514)
.++.+| ||+++++++++.+......+ +.++..+.++.++++... ...+++++.. ++++++.+.|+++ ++.
T Consensus 198 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~-~~~~~~~~~~-~~~~~l~~~L~~~~~~~ 271 (350)
T 3fkd_A 198 AYGIPGLRIGYIVANKDFMKRVAAFSTPW----AVNALAIEAAKFILIHPA-QFTLPIRKWQ-RNTVDFITALNRLDGVE 271 (350)
T ss_dssp HHSCGGGCCEEEECCHHHHHHHHTTCCTT----CSCHHHHHHHHHHHHCTT-TTCCCHHHHH-HHHHHHHHHHHHSTTEE
T ss_pred hccCcchheEeEEeCHHHHHHHHHhCCCC----CCCHHHHHHHHHHHhCHH-HHHHHHHHHH-HHHHHHHHHHhcCCCcE
Confidence 998656 99999999999998766433 678888888888887432 1222333333 8889999999988 888
Q ss_pred cccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 406 VEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 406 ~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
+.++.++++++.++.. +..++.+.|.+++||.+.++..|. ..+.+++|++++ +++++++++++|+++.++.
T Consensus 272 ~~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gi~v~~g~~f~-~~~~~~iRis~~---~~~~~~~l~~al~~~~~~~ 342 (350)
T 3fkd_A 272 VHPSGTTFFLLRLKKG-TAAELKKYMLEEYNMLIRDASNFR-GLDESYVRITTQ---RPAQNQLFIKALETFLEKY 342 (350)
T ss_dssp ECCCSSSEEEEEESSS-CHHHHHHHHHHTTCEECEECTTST-TCCTTEEEEECC---CHHHHHHHHHHHHHHHTC-
T ss_pred ECCCCCcEEEEECCCC-CHHHHHHHHHHHCCEEEEeCccCC-CCCCCEEEEEcC---CHHHHHHHHHHHHHHHHHh
Confidence 7777788888888765 678999999633999999988654 345789999998 8999999999999987654
No 111
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.96 E-value=5.2e-28 Score=249.07 Aligned_cols=342 Identities=13% Similarity=0.112 Sum_probs=232.7
Q ss_pred CceeeecccCCCC-------CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC---cEEEEecccc
Q psy16848 17 NRVTCRLSSVQYK-------VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE---AGLVFTSCYV 86 (514)
Q Consensus 17 g~~~~d~~~~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~i~~~sGt~ 86 (514)
|..++|+..+.|. .++.+.+++.+..... ..++....|..++.+++.+++.+..+.+ .++++++|++
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~---~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~ 113 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSE---HVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTG 113 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHH---HHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHH
T ss_pred CCCeEECCCCcccCCCCCccccHHHHHHHHHhcccc---cCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCchHH
Confidence 5678999887663 2456666655433211 0111223355566666666666655666 6777888899
Q ss_pred ccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccch
Q psy16848 87 ANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL 166 (514)
Q Consensus 87 a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
|+..++.++.. +||.|+++.+.|......++..|.+++.++..+.+
T Consensus 114 al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~-------------------------------- 159 (418)
T 3rq1_A 114 GIHHLIHNYTE--PGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEH-------------------------------- 159 (418)
T ss_dssp HHHHHHHHHSC--TTCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTT--------------------------------
T ss_pred HHHHHHHHhcC--CCCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCC--------------------------------
Confidence 99999988866 99999999999999888888888877765431000
Q ss_pred hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848 167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN 246 (514)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~ 246 (514)
. ..|.+
T Consensus 160 -----------------------------~---------------------------------------------~~d~~ 165 (418)
T 3rq1_A 160 -----------------------------N---------------------------------------------NFNHE 165 (418)
T ss_dssp -----------------------------S---------------------------------------------SBCHH
T ss_pred -----------------------------C---------------------------------------------CcCHH
Confidence 0 01455
Q ss_pred HHHHHHhhccCCCce-EEEEecC-CCCCccccC---HHHHHHHHH------HcCCEEEEecccc-ccccCCCCCCcccc-
Q psy16848 247 HLTQVLENMDVKIPK-LVAFETV-HSMTGAICP---LKELCEVSH------QHGALTFVDEVHA-VGLYGEHGAGIGER- 313 (514)
Q Consensus 247 ~l~~~l~~~~~~~~~-~vv~~~~-~nptG~~~~---l~~l~~l~~------~~gv~li~Dea~~-~g~~g~~~~~~~~~- 313 (514)
.+++.+++...++++ ++++++| +||||.+++ +++|+++|+ +||+++|+||+|. ++..+....++...
T Consensus 166 ~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~ 245 (418)
T 3rq1_A 166 AFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKF 245 (418)
T ss_dssp HHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGG
T ss_pred HHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHH
Confidence 566666543222344 7888989 999999999 566667776 8999999999997 32221111111111
Q ss_pred CCCccC-ceEEEcCCcccccCCC---eEEEe---cHHHHHHHHhhcCceEe--ccCCcHHHHHHHHHHHHHhh-----hc
Q psy16848 314 DGQLHN-MDIISGTLGKAFGNIG---GYIVG---TKNFIDTIRSYAAGFIF--TTSLPPTVLAGAREAIRILS-----SQ 379 (514)
Q Consensus 314 ~~~~~~-~di~~~S~sK~lg~~G---G~l~~---~~~~~~~l~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~-----~~ 379 (514)
.+...+ .+++++||||.+|.+| ||+++ ++++++.+......... ..+.+...+.++.++++... ..
T Consensus 246 ~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 325 (418)
T 3rq1_A 246 SHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEA 325 (418)
T ss_dssp TTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHH
Confidence 111111 1488899999998767 99988 89998888765432211 12467777777777775321 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCccccCCCcE-EEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEe
Q psy16848 380 EGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHI-IPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP 458 (514)
Q Consensus 380 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~ 458 (514)
...+++++++++++++.+.|+++|+++..+.+++ +++.++ +..++++.| .++||.+.++ .+++|+++
T Consensus 326 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~l-~~~gi~v~~g--------~~~iRis~ 393 (418)
T 3rq1_A 326 ERNCYYQLIRDRADIFKQEAAQVGLPMLPYRGGFFITIPTD---SANAICEEL-KKEHIYVIAL--------ANGIRIAA 393 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCSSSEEEEECT---THHHHHHHH-HHTTEECEEC--------SSEEEEEG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEcCCC---CHHHHHHHH-HhCCEEEecC--------CCCeEEEE
Confidence 3346678889999999999998888887777664 445553 367888888 5999999875 35799998
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848 459 TPFHTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 459 ~~~~t~e~id~~~~~l~~~l~~~~ 482 (514)
+ ..+++++++++++|++++++++
T Consensus 394 ~-~~~~~~i~~~~~~l~~~l~~~~ 416 (418)
T 3rq1_A 394 C-GIPKCQMTGLAEKIYNAMKSLG 416 (418)
T ss_dssp G-GSCHHHHTTHHHHHHHHHHHTT
T ss_pred e-cCCHHHHHHHHHHHHHHHHHHh
Confidence 7 5699999999999999998764
No 112
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.96 E-value=2.4e-27 Score=241.99 Aligned_cols=301 Identities=16% Similarity=0.116 Sum_probs=223.0
Q ss_pred hHHHHHHHHHHhHcCCCc---EEEEeccccccccchhhccccCCCceEEecCccchhhh--hhhhcCCCCeeeccCCChH
Q psy16848 60 LFHEKLEEDVAKLHQKEA---GLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMI--QGIRNSSAPKIIYRHNDVN 134 (514)
Q Consensus 60 ~~~~~~~~~la~~~~~~~---~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~--~~~~~~~~~~~~~~~~d~~ 134 (514)
+...++++.+++++|.+. .++++|||+++..++.++.. +||.|+++.++|.+.. ..++..|.+++.++.++ +
T Consensus 51 ~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~ 127 (396)
T 2ch1_A 51 RTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLE--EGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPP-D 127 (396)
T ss_dssp HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCC--TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-T
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhcC--CCCeEEEEcCCcccHHHHHHHHHcCCceEEecCCC-C
Confidence 457899999999998753 45566788899999988865 9999999999998863 24455555554433210 0
Q ss_pred HHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhh
Q psy16848 135 HLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT 214 (514)
Q Consensus 135 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~ 214 (514)
+
T Consensus 128 --------------------------------------------------------------~----------------- 128 (396)
T 2ch1_A 128 --------------------------------------------------------------R----------------- 128 (396)
T ss_dssp --------------------------------------------------------------S-----------------
T ss_pred --------------------------------------------------------------C-----------------
Confidence 0
Q ss_pred ccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEE
Q psy16848 215 LVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFV 294 (514)
Q Consensus 215 l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~ 294 (514)
..|.+.+++.+++. ++++|++++++||||.++|+++|.++|+++|+++|+
T Consensus 129 ---------------------------~~d~~~l~~~l~~~---~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~ 178 (396)
T 2ch1_A 129 ---------------------------PFSLETLARAIELH---QPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIV 178 (396)
T ss_dssp ---------------------------CCCHHHHHHHHHHH---CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEE
T ss_pred ---------------------------CCCHHHHHHHHHhC---CCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEE
Confidence 12556666666542 478999999999999999999999999999999999
Q ss_pred eccccccccCCCCCCccccCCCccCceEEEcCCccccc-CCC-eEEEecHHHHHHHHhhcC---c---------------
Q psy16848 295 DEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG-NIG-GYIVGTKNFIDTIRSYAA---G--------------- 354 (514)
Q Consensus 295 Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg-~~G-G~l~~~~~~~~~l~~~~~---~--------------- 354 (514)
||+|++|.. ++ ... ..++|++++|+||+++ +.| |+++.++++++.+..... .
T Consensus 179 Dea~~~g~~-----~~-~~~--~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (396)
T 2ch1_A 179 DAVASLCGV-----PF-YMD--KWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCY 250 (396)
T ss_dssp ECTTTBTTB-----CC-CTT--TTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCS
T ss_pred EccccccCC-----cc-chh--hcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEechHHHHHhhhhh
Confidence 999996532 11 111 2357999999999875 445 899999988887754210 0
Q ss_pred ---eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCC-----cEEEEEeCCCccHHH
Q psy16848 355 ---FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPS-----HIIPIKIGNPALNTK 426 (514)
Q Consensus 355 ---~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-----~~~~i~l~~~~~~~~ 426 (514)
.....+.+...+.++.++++.+.+.++++++++++++++++.+.|+++|+.+..+.+ .++.+.++.+.+..+
T Consensus 251 ~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (396)
T 2ch1_A 251 DEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGVDWWK 330 (396)
T ss_dssp SSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCCHHH
T ss_pred cccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCeeccCCccccCCceEEEEcCCCCCHHH
Confidence 001224567777888888887655677889999999999999999988887765543 377788875556788
Q ss_pred HHHHHHHhCCeEEecccCCCCCCCCcEEEEEe-CCCCCHHHHHHHHHHHHHHHHHcCC
Q psy16848 427 ICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP-TPFHTREMIDKFVTDLLAVWKSLDL 483 (514)
Q Consensus 427 ~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~-~~~~t~e~id~~~~~l~~~l~~~~~ 483 (514)
+.+.|++++||.+.++..+ ...+++|+++ +..++++++++++++|+++++++..
T Consensus 331 ~~~~L~~~~gi~v~~g~~~---~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~~ 385 (396)
T 2ch1_A 331 VSQYAMNNFSLEVQGGLGP---TFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATHP 385 (396)
T ss_dssp HHHHHHHHHCBCCBCCCGG---GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhCCEEEecCccc---cCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhCc
Confidence 9999963459999876542 2357999999 5566899999999999999988754
No 113
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.96 E-value=2.7e-28 Score=252.17 Aligned_cols=337 Identities=12% Similarity=0.039 Sum_probs=240.0
Q ss_pred ceeeecccCCC--CC-ChhH--HHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-----CC--Cc---EEEEe
Q psy16848 18 RVTCRLSSVQY--KV-PKGG--RKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-----QK--EA---GLVFT 82 (514)
Q Consensus 18 ~~~~d~~~~~~--~~-~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-----~~--~~---~i~~~ 82 (514)
..++||..+.+ ++ +|.+ .+++.+++.... ... |+......++++.+++++ +. +. .++++
T Consensus 47 ~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~--~~~----y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~ 120 (430)
T 2x5f_A 47 STTYNATIGMATNKDGKMFASSLDAMFNDLTPDE--IFP----YAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTN 120 (430)
T ss_dssp TCSEECCCSSCEETTEECCCHHHHTTBSSCCGGG--TSS----CCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEES
T ss_pred CCcEEeeeeeccCCCCchhhHHHHHHHHhcCccc--ccc----cCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcC
Confidence 45799987776 34 4566 565555443211 111 111122456666666666 43 45 67777
Q ss_pred ccccccccchhhccccCCCceEEecCccchhhhhhhhc-CCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccC
Q psy16848 83 SCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRN-SSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG 161 (514)
Q Consensus 83 sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~-~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 161 (514)
+|++|+..++.++.. +||.|+++.+.|.+....++. .|.+++.++..+.+
T Consensus 121 g~~~al~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~--------------------------- 171 (430)
T 2x5f_A 121 ALTHGLSLVGDLFVN--QDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKD--------------------------- 171 (430)
T ss_dssp HHHHHHHHHHHHHCC--TTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTT---------------------------
T ss_pred CchHHHHHHHHHHhC--CCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCcc---------------------------
Confidence 778899999988866 999999999999999888887 78777655431000
Q ss_pred CccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec
Q psy16848 162 AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~ 241 (514)
.
T Consensus 172 ----------------------------------~--------------------------------------------- 172 (430)
T 2x5f_A 172 ----------------------------------G--------------------------------------------- 172 (430)
T ss_dssp ----------------------------------S---------------------------------------------
T ss_pred ----------------------------------C---------------------------------------------
Confidence 0
Q ss_pred CCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHH-----cCCEEEEeccccccccC-CCCCCcc-
Q psy16848 242 HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQ-----HGALTFVDEVHAVGLYG-EHGAGIG- 311 (514)
Q Consensus 242 ~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~-----~gv~li~Dea~~~g~~g-~~~~~~~- 311 (514)
..|.+.+++.+++. .++++++++++|+||||.+++ +++|.++|++ ||+++|+||+|+.+..+ ....++.
T Consensus 173 ~~d~~~l~~~l~~~-~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~ 251 (430)
T 2x5f_A 173 HYTTDSLVEALQSY-NKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFT 251 (430)
T ss_dssp CBCSHHHHHHHHHC-CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHH
T ss_pred CcCHHHHHHHHHhc-CCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHH
Confidence 01456666666543 135789999999999999999 8999999999 99999999999954432 2122222
Q ss_pred ccCCCccCc---eEEEcCCcccccCCC---eEEEe---cHHHHHHHHhhcCc----eEeccCCcHHHHHHHHHHHH-Hhh
Q psy16848 312 ERDGQLHNM---DIISGTLGKAFGNIG---GYIVG---TKNFIDTIRSYAAG----FIFTTSLPPTVLAGAREAIR-ILS 377 (514)
Q Consensus 312 ~~~~~~~~~---di~~~S~sK~lg~~G---G~l~~---~~~~~~~l~~~~~~----~~~~~~~~~~~~~a~~~~l~-~~~ 377 (514)
.... ..+. +++++|+||.+|.+| ||+++ ++++++.+...... . +.+.+++.+.++.++++ ...
T Consensus 252 ~~~~-~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~ 328 (430)
T 2x5f_A 252 ALTN-LHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSN--ISSGPLPTQSAVKHVLKNNKQ 328 (430)
T ss_dssp HHHT-TCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTT--TSSCCHHHHHHHHHHHHSCHH
T ss_pred HHhh-ccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcc--cCCCChHHHHHHHHHHccChH
Confidence 2212 1245 788999999998657 99999 99998888764432 2 33678888888888887 320
Q ss_pred -hchHHHHHHHHHHHHHHHHHHHH----hCCCccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCC
Q psy16848 378 -SQEGVELRAKHQDIVAYLRNELI----QIGFPVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGE 451 (514)
Q Consensus 378 -~~~~~~~~~~~~~~~~~l~~~L~----~~g~~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~ 451 (514)
.+.+++.+++++++++++.+.|+ +.++.+..+.++ ++++.++ +.+..++.+.|++++||.+.++ +.
T Consensus 329 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g-------~~ 400 (430)
T 2x5f_A 329 FDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNSGYFMAIKVH-DVDPEALRKHLIDKYSIGVIAL-------NA 400 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEEECCCCBSSEEEEEES-SSCHHHHHHHHHHHHCEECEEC-------SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceeeCCCceEEEEeCCC-CCCHHHHHHHHHHhCCEEEecC-------CC
Confidence 12345588889999999999998 567777666655 5778887 4567889999963399999876 25
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 452 EKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 452 ~~iRl~~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
+++|++++. .+++++++++++|+++++++
T Consensus 401 ~~iRis~~~-~~~e~i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 401 TDIRIAFSC-VEKDDIPHVFDSIAKAIDDL 429 (430)
T ss_dssp SEEEEEGGG-SCGGGHHHHHHHHHHHHHHH
T ss_pred CeEEEEEec-CCHHHHHHHHHHHHHHHHhc
Confidence 689999984 58999999999999998764
No 114
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.96 E-value=2.4e-27 Score=245.37 Aligned_cols=346 Identities=17% Similarity=0.163 Sum_probs=235.2
Q ss_pred cCCceeeecccCCC---CC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-CCCcEEEEecccccc
Q psy16848 15 KSNRVTCRLSSVQY---KV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-QKEAGLVFTSCYVAN 88 (514)
Q Consensus 15 ~~g~~~~d~~~~~~---~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~i~~~sGt~a~ 88 (514)
.+|+.|+||.++.+ ++ ||++.+++.+++.+. ..+ ....+...++++++++++ +.++++|++|||+|+
T Consensus 52 ~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~------~~~~~~~~~l~~~la~~~~~~~~v~~~~sGsea~ 124 (434)
T 3l44_A 52 VDGNKYIDYLAAYGPIITGHAHPHITKAITTAAENG-VLY------GTPTALEVKFAKMLKEAMPALDKVRFVNSGTEAV 124 (434)
T ss_dssp TTCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHC-SCC------SSCCHHHHHHHHHHHHHCTTCSEEEEESSHHHHH
T ss_pred CCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhC-cCC------CCCCHHHHHHHHHHHHhCCCCCEEEEeCchHHHH
Confidence 37788999976543 44 799999999999872 111 123577889999999998 567788889999999
Q ss_pred ccchhhccccCCCceEEecCcc-chhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848 89 DSTLFTLGKMIPGLHYISDAGN-HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK 167 (514)
Q Consensus 89 ~~~l~~l~~~~~gd~v~~~~~~-h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
..++..+....+++.|++.++. |.....++...+.....+...+
T Consensus 125 ~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~----------------------------------- 169 (434)
T 3l44_A 125 MTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPD----------------------------------- 169 (434)
T ss_dssp HHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBS-----------------------------------
T ss_pred HHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCC-----------------------------------
Confidence 9999876432356666665554 4445544444433221110000
Q ss_pred HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848 168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH 247 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~ 247 (514)
..+ ........+..++.+|.+.
T Consensus 170 ---------------------------~~~-------------------------------~~~~~~~~~~~~~~~d~~~ 191 (434)
T 3l44_A 170 ---------------------------SAG-------------------------------VPQSIAQEVITVPFNNVET 191 (434)
T ss_dssp ---------------------------STT-------------------------------CCHHHHTTEEEECTTCHHH
T ss_pred ---------------------------cCC-------------------------------CCCcCCCceEecCcccHHH
Confidence 000 0000122466777889999
Q ss_pred HHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEE
Q psy16848 248 LTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDII 323 (514)
Q Consensus 248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~ 323 (514)
+++.+++.. +++++|++++++|++|.+.+ +++|.++|++||++||+||+|+....|.. ...+..+. .+|++
T Consensus 192 le~~l~~~~-~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g~~--~~~~~~~~--~~di~ 266 (434)
T 3l44_A 192 LKEALDKWG-HEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMYG--GAQDLLGV--TPDLT 266 (434)
T ss_dssp HHHHHHHHG-GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSSSS--CHHHHHTC--CCSEE
T ss_pred HHHHHHhCC-CCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceecccc--HHHHHcCC--CCCee
Confidence 999887642 35789999999999999887 99999999999999999999982232221 11223333 57877
Q ss_pred EcCCcccccCCC---eEEEecHHHHHHHHhhcCc-eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q psy16848 324 SGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAG-FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNEL 399 (514)
Q Consensus 324 ~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 399 (514)
||||.+++ | |++++++++++.+...... ...+++.+++.++++.++++.+.++. ..++++++.+++.+.|
T Consensus 267 --t~sK~~~~-G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~---~~~~~~~~~~~l~~~L 340 (434)
T 3l44_A 267 --ALGKVIGG-GLPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEG---LYEKLDELGATLEKGI 340 (434)
T ss_dssp --EEEGGGGT-TSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTT---HHHHHHHHHHHHHHHH
T ss_pred --ehhhhhcC-CcCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHHH
Confidence 89999985 5 9999999998877653211 12245789999999999999875433 6666777777777766
Q ss_pred HhC----CCc-cccCCCcEEEEEeCC-------------CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCC
Q psy16848 400 IQI----GFP-VEHTPSHIIPIKIGN-------------PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF 461 (514)
Q Consensus 400 ~~~----g~~-~~~~~~~~~~i~l~~-------------~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~ 461 (514)
++. ++. ...+.+.++.+.+.. .....++.+.|+ ++||.+.++. ...+|++ ..
T Consensus 341 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~-------~~~~rl~--~~ 410 (434)
T 3l44_A 341 LEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLML-QEGVNLAPSK-------YEAWFLT--TE 410 (434)
T ss_dssp HHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHH-HTTEECCSST-------TCCEECC--TT
T ss_pred HHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHH-HCCeEEeecC-------CCcEEEe--cc
Confidence 653 332 234567788887732 122367888886 8999997653 2357875 46
Q ss_pred CCHHHHHHHHHHHHHHHHHc
Q psy16848 462 HTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 462 ~t~e~id~~~~~l~~~l~~~ 481 (514)
+|++++++++++|+++++++
T Consensus 411 ~t~e~i~~~l~~l~~~l~~~ 430 (434)
T 3l44_A 411 HTKEDIEYTIEAVGRAFAAL 430 (434)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998765
No 115
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.96 E-value=1.2e-27 Score=239.84 Aligned_cols=324 Identities=15% Similarity=0.117 Sum_probs=230.9
Q ss_pred cccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC---c-EEEEeccccccccchhhcccc
Q psy16848 23 LSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE---A-GLVFTSCYVANDSTLFTLGKM 98 (514)
Q Consensus 23 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~-~i~~~sGt~a~~~~l~~l~~~ 98 (514)
|..+.+..+|++.+++.+++.. . . .....+...++++++++++|.+ + .++++||++|+..++.++.
T Consensus 4 ~~~gp~~~~~~v~~a~~~~~~~----~---~-~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~-- 73 (353)
T 2yrr_A 4 LTPGPTPIPERVQKALLRPMRG----H---L-DPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD-- 73 (353)
T ss_dssp CSSSSCCCCHHHHGGGGSCCCC----T---T-CHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS--
T ss_pred CCCCCCCCCHHHHHHHhccccc----c---c-CHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc--
Confidence 3444445578888877765542 1 1 1112356789999999999873 4 4555667888888887775
Q ss_pred CCCceEEecCccchhh--hhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhc
Q psy16848 99 IPGLHYISDAGNHASM--IQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH 176 (514)
Q Consensus 99 ~~gd~v~~~~~~h~~~--~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (514)
+ |.|+++.+.|.+. ...++..|.+++.++.++ +
T Consensus 74 -~-d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~------------------------------------------ 108 (353)
T 2yrr_A 74 -R-GPVLVLVNGAFSQRVAEMAALHGLDPEVLDFPP-G------------------------------------------ 108 (353)
T ss_dssp -C-CCEEEEECSHHHHHHHHHHHHTTCCEEEEECCT-T------------------------------------------
T ss_pred -C-CcEEEEcCCCchHHHHHHHHHcCCceEEEeCCC-C------------------------------------------
Confidence 3 8899988888874 333344555554433210 0
Q ss_pred CceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhcc
Q psy16848 177 GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD 256 (514)
Q Consensus 177 ~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~ 256 (514)
+ ..|.+.+++.+++.
T Consensus 109 --------------------~--------------------------------------------~~d~~~l~~~l~~~- 123 (353)
T 2yrr_A 109 --------------------E--------------------------------------------PVDPEAVARALKRR- 123 (353)
T ss_dssp --------------------S--------------------------------------------CCCHHHHHHHHHHS-
T ss_pred --------------------C--------------------------------------------CCCHHHHHHHHHhC-
Confidence 0 12556666666542
Q ss_pred CCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc-cCCC
Q psy16848 257 VKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF-GNIG 335 (514)
Q Consensus 257 ~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l-g~~G 335 (514)
++++|++++++||||.+.|+++|.++|++||+++|+|++|+++.. . + +.. ..++|++++|++|++ ++.|
T Consensus 124 --~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~---~--~-~~~--~~~~d~~~~s~~K~~~~~~g 193 (353)
T 2yrr_A 124 --RYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGML---P--F-SMR--AMGVDYAFTGSQKCLSAPPG 193 (353)
T ss_dssp --CCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTS---C--C-CHH--HHTCSEEECCTTSTTCCCSS
T ss_pred --CCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCcccccc---c--c-ccc--ccCceEEEecCcccccCCCc
Confidence 478999999999999999999999999999999999999985532 1 1 111 125799999999976 4456
Q ss_pred -eEEEecHHHHHHHHh-------------hcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848 336 -GYIVGTKNFIDTIRS-------------YAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ 401 (514)
Q Consensus 336 -G~l~~~~~~~~~l~~-------------~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 401 (514)
|++++++++++.+.. ......+..+.+...+.++.++++.+.+.++++++++++++++++.+.|++
T Consensus 194 ~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 273 (353)
T 2yrr_A 194 LAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKA 273 (353)
T ss_dssp CEEEEECHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECHHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998876641 000111133567777777788888775555788999999999999999998
Q ss_pred CCCccccCC---CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHH-HHHHHHHHH
Q psy16848 402 IGFPVEHTP---SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMID-KFVTDLLAV 477 (514)
Q Consensus 402 ~g~~~~~~~---~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id-~~~~~l~~~ 477 (514)
.|+.+..+. +.++++.++...+..++.+.|. ++||.+.++..+. ..+++|++++...+++|++ +++++|+++
T Consensus 274 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~g~~~~---~~~~iRi~~~~~~~~~~~~~~~~~~l~~~ 349 (353)
T 2yrr_A 274 RGFRPYPKASPLPTVLVVRPPEGVDADRLVRALY-AEGVAVAGGIGPT---RGQVLRLGLMGEGARREAYQAFLKALDRA 349 (353)
T ss_dssp TTCEESCSSSBCTTEEEEECCTTCCHHHHHHHHH-HTTEECEECCGGG---TTTCEEEECSGGGSCHHHHHHHHHHHHHH
T ss_pred CCCccccCccCCCeEEEEECCCCCCHHHHHHHHH-HCCEEEeCCcccc---CCCeEEEecCccCCHHHHHHHHHHHHHHH
Confidence 887765542 3466788865556788999996 7899999877432 3568999997778899999 999999998
Q ss_pred HHH
Q psy16848 478 WKS 480 (514)
Q Consensus 478 l~~ 480 (514)
++.
T Consensus 350 l~~ 352 (353)
T 2yrr_A 350 LAL 352 (353)
T ss_dssp HHC
T ss_pred Hhh
Confidence 753
No 116
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.96 E-value=3e-27 Score=237.04 Aligned_cols=328 Identities=19% Similarity=0.260 Sum_probs=220.9
Q ss_pred eeeecccCCCC-CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccc
Q psy16848 19 VTCRLSSVQYK-VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGK 97 (514)
Q Consensus 19 ~~~d~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~ 97 (514)
.+|||+++... ..|++++++.+... . ...++..+...++++++++++|.++.++++|||+|+..++.++.+
T Consensus 4 ~~i~~~~~~~~~p~~~~~~a~~~~~~------~--~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~~~~~ 75 (347)
T 1jg8_A 4 MMIDLRSDTVTKPTEEMRKAMAQAEV------G--DDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQ 75 (347)
T ss_dssp -CEECSCGGGCCCCHHHHHHHHTCCC------C--CGGGTCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCC
T ss_pred eEEEeccccCCCCCHHHHHHHhcCCC------C--CcccCCChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHHHhcC
Confidence 35788765544 35666666543211 1 112334567789999999999999999999999999888888765
Q ss_pred cCCCceEEecCccchhhhh---hhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhh
Q psy16848 98 MIPGLHYISDAGNHASMIQ---GIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSH 174 (514)
Q Consensus 98 ~~~gd~v~~~~~~h~~~~~---~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (514)
|||+|+++.++|.+... .++..|++++.+ ..+
T Consensus 76 --~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~------------------------------------------ 110 (347)
T 1jg8_A 76 --RGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PGK------------------------------------------ 110 (347)
T ss_dssp --TTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CEE------------------------------------------
T ss_pred --CCCEEEEcCcchhhhccccchhhccCeEEEEe-cCC------------------------------------------
Confidence 99999999999987653 234445544433 100
Q ss_pred hcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhh
Q psy16848 175 QHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLEN 254 (514)
Q Consensus 175 ~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~ 254 (514)
.+ ..|.+.+++.+++
T Consensus 111 ---------------------~~--------------------------------------------~~d~~~l~~~i~~ 125 (347)
T 1jg8_A 111 ---------------------NG--------------------------------------------AMDPDDVRKAIRP 125 (347)
T ss_dssp ---------------------TT--------------------------------------------EECHHHHHHHSCC
T ss_pred ---------------------CC--------------------------------------------ccCHHHHHHHhcc
Confidence 00 0144555555543
Q ss_pred cc--CCCceEEEEecCCCCC-ccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc
Q psy16848 255 MD--VKIPKLVAFETVHSMT-GAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG 328 (514)
Q Consensus 255 ~~--~~~~~~vv~~~~~npt-G~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s 328 (514)
.. .+++++|++++++||+ |.++| +++|.++|++||+++|+|++|.++.....+....+. ....|.++.|+|
T Consensus 126 ~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~---~~~~d~~~~s~s 202 (347)
T 1jg8_A 126 RNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEY---AGYADSVMFCLS 202 (347)
T ss_dssp SCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHH---HHTCSEEEEESS
T ss_pred ccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHh---cccccEEEEecc
Confidence 10 1368999999999999 99988 578999999999999999998643211111111111 124577777999
Q ss_pred ccccC-CCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCcc-
Q psy16848 329 KAFGN-IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPV- 406 (514)
Q Consensus 329 K~lg~-~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~- 406 (514)
|++++ .|+++++++++++.+......+..+...+...++++..+++... ..+ ++..++++++.+.|++.++.+
T Consensus 203 K~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~----~~~~~~~~~l~~~L~~~~~~~~ 277 (347)
T 1jg8_A 203 KGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMV-DRL----KEDHENARFLALKLKEIGYSVN 277 (347)
T ss_dssp STTCCSSCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSS-TTH----HHHHHHHHHHHHHHHHHTCBCC
T ss_pred cccCCCceEEEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH-HHH----HHHHHHHHHHHHHHHhcCceec
Confidence 99985 33467788888877765433332122345555666666676532 222 223346677788887766654
Q ss_pred -ccCCCcEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848 407 -EHTPSHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS 480 (514)
Q Consensus 407 -~~~~~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~ 480 (514)
.++.++++++.++. ..+..++.+.|. ++||.+.++. .+++|++++..++++|+++++++|++++++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~-------~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 278 PEDVKTNMVILRTDNLKVNAHGFIEALR-NSGVLANAVS-------DTEIRLVTHKDVSRNDIEEALNIFEKLFRK 345 (347)
T ss_dssp GGGCCSSEEEEECTTSSSCHHHHHHHHH-HHTEECEEEE-------TTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCcceEEEEEcccccCCHHHHHHHHH-HCCCEEecCC-------CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 24567788888874 446788999995 8999998642 358999998889999999999999998765
No 117
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.96 E-value=5.6e-27 Score=242.52 Aligned_cols=348 Identities=18% Similarity=0.136 Sum_probs=236.7
Q ss_pred CCceeeecccCC---CCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccccc
Q psy16848 16 SNRVTCRLSSVQ---YKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVAN 88 (514)
Q Consensus 16 ~g~~~~d~~~~~---~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~ 88 (514)
+|+.++|+.++. +++ +|++.+++.+++++.... . ..+..+...+++++++++++ .+++++++||++|+
T Consensus 41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~---~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~ 115 (433)
T 1zod_A 41 DGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHL--F---SEMLSRPVVDLATRLANITPPGLDRALLLSTGAESN 115 (433)
T ss_dssp TCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCC--C---TTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHH
T ss_pred CCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCccc--c---cccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHH
Confidence 677888985433 444 799999999999875421 1 12235678899999999986 45678888999999
Q ss_pred ccchhhccccCCCceEEecC-ccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848 89 DSTLFTLGKMIPGLHYISDA-GNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK 167 (514)
Q Consensus 89 ~~~l~~l~~~~~gd~v~~~~-~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
..++..+....+++.|++.+ .+|.....++...+..... .. .+.
T Consensus 116 ~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~-~~----------------~~~------------------ 160 (433)
T 1zod_A 116 EAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRK-GV----------------GPA------------------ 160 (433)
T ss_dssp HHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCS-SS----------------CCC------------------
T ss_pred HHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCcccc-cc----------------CCC------------------
Confidence 99987643111456666555 4555555444433321100 00 000
Q ss_pred HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec------
Q psy16848 168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR------ 241 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~------ 241 (514)
..|...+.++
T Consensus 161 ----------------------------------------------------------------~~~~~~v~~~~~~~~~ 176 (433)
T 1zod_A 161 ----------------------------------------------------------------AVGSFAIPAPFTYRPR 176 (433)
T ss_dssp ----------------------------------------------------------------CTTEEEECCCCTTSCC
T ss_pred ----------------------------------------------------------------CCCceEecCCcccccc
Confidence 0011111111
Q ss_pred CC---------ChhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCC
Q psy16848 242 HN---------DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHG 307 (514)
Q Consensus 242 ~~---------d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~ 307 (514)
++ |++.+++.+++...+++++|++++++||+|...+ +++|.++|++||+++|+||+|+ ++..|..+
T Consensus 177 ~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~ 256 (433)
T 1zod_A 177 FERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF 256 (433)
T ss_dssp CEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred cCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHh
Confidence 11 3667777776533246788999888899997665 9999999999999999999999 55544311
Q ss_pred CCccccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHH
Q psy16848 308 AGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVEL 384 (514)
Q Consensus 308 ~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 384 (514)
..+..+. .+|++ |+||++++ | |++++++++++.+.........+.+.+++.++++.++++.+.++. .
T Consensus 257 --~~~~~~~--~~di~--s~sK~~~~-G~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~~~---~ 326 (433)
T 1zod_A 257 --ACQRDGV--TPDIL--TLSKTLGA-GLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDG---L 326 (433)
T ss_dssp --THHHHTC--CCSEE--EECHHHHT-TSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTT---H
T ss_pred --HHhhcCC--CCCEE--EecccccC-CCCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhCC---H
Confidence 1122232 56776 89999987 6 999999999988876322211255778999999999998775543 6
Q ss_pred HHHHHHHHHHHHHHHHhC--CCc---cccCCCcEEEEEeCCC--------ccHHHHHHHHHHhCCeEEecccCCCCCCCC
Q psy16848 385 RAKHQDIVAYLRNELIQI--GFP---VEHTPSHIIPIKIGNP--------ALNTKICDMLLKEKGHYVQPINYPTVPVGE 451 (514)
Q Consensus 385 ~~~~~~~~~~l~~~L~~~--g~~---~~~~~~~~~~i~l~~~--------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~ 451 (514)
.++++++++++.+.|+++ .++ ...+.+.++++.++.. ....++.+.|+ ++||.+.++..+. .+
T Consensus 327 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~---~~ 402 (433)
T 1zod_A 327 VARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECM-NLGLSMNIVQLPG---MG 402 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHH-HTTEECCEECCTT---SC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHH-HCCCeEeccCCCC---CC
Confidence 677788888888887764 122 2345677888776531 23677889996 8999999876421 24
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 452 EKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 452 ~~iRl~~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
+++|++++..++++++++++++|+++++++
T Consensus 403 ~~lRi~~~~~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 403 GVFRIAPPLTVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence 799999998899999999999999988753
No 118
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.95 E-value=2.2e-27 Score=243.06 Aligned_cols=345 Identities=18% Similarity=0.178 Sum_probs=239.5
Q ss_pred CceeeecccCCCCCChhHHHHHHHHHH-HhCCCCCCcCcccCc---chHHHHHHHHHHhHcCCCcEE-EEeccccccccc
Q psy16848 17 NRVTCRLSSVQYKVPKGGRKCLGEALE-KFGTGAGGTRNISGN---SLFHEKLEEDVAKLHQKEAGL-VFTSCYVANDST 91 (514)
Q Consensus 17 g~~~~d~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~i-~~~sGt~a~~~~ 91 (514)
+..++|+.+.+++ +|++.+++.+++. .++..++++....+. .++.+++++++++++|.+... +++||++|+..+
T Consensus 23 ~~~~~~~~~~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a~~~a 101 (405)
T 2vi8_A 23 HAKIELIASENFV-SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAV 101 (405)
T ss_dssp HHSEECCTTCCCC-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHH
T ss_pred hcceeeccCcccC-CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceEEEecCcHHHHHHH
Confidence 3567899888888 8999999999885 443332222222222 223334557999999988764 468999999999
Q ss_pred hhhccccCCCceEEecCccchhhhhhh---hcCCC--CeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccch
Q psy16848 92 LFTLGKMIPGLHYISDAGNHASMIQGI---RNSSA--PKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL 166 (514)
Q Consensus 92 l~~l~~~~~gd~v~~~~~~h~~~~~~~---~~~~~--~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
+.++.. +||.|+++.++|.+..... +..|. +++.++.+.
T Consensus 102 ~~~~~~--~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------------------------------- 145 (405)
T 2vi8_A 102 YFTVLE--HGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDP---------------------------------- 145 (405)
T ss_dssp HHHHCC--TTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCT----------------------------------
T ss_pred HHHhcC--CCCEEEEecccccchhcccchhhhccceeEEEeccccc----------------------------------
Confidence 988865 9999999999998875311 11111 222111100
Q ss_pred hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848 167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN 246 (514)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~ 246 (514)
.. ...|.+
T Consensus 146 ---------------------------~~---------------------------------------------~~~d~~ 153 (405)
T 2vi8_A 146 ---------------------------ET---------------------------------------------HVIDYD 153 (405)
T ss_dssp ---------------------------TT---------------------------------------------CSBCHH
T ss_pred ---------------------------cc---------------------------------------------CCcCHH
Confidence 00 012566
Q ss_pred HHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcC
Q psy16848 247 HLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT 326 (514)
Q Consensus 247 ~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S 326 (514)
.+++.+++. +++++++++ +|+ |...++++|.++|++||+++|+||+|++|..+.. ... ... ..+|++++|
T Consensus 154 ~l~~~i~~~---~~~~v~~~~-~~~-~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~---~~~-~~~-~~~di~~~s 223 (405)
T 2vi8_A 154 DVREKARLH---RPKLIVAAA-AAY-PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAG---LHP-NPV-PYAHFVTTT 223 (405)
T ss_dssp HHHHHHHHH---CCSEEEECC-SSC-CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTT---SSC-CST-TTCSEEEEE
T ss_pred HHHHHHHhc---CCeEEEEeC-CCC-CccCCHHHHHHHHHHcCCEEEEEccccccccccC---cCC-Ccc-ccCCEEEEe
Confidence 666666542 357777743 333 5666899999999999999999999997654221 111 111 257899999
Q ss_pred Cccccc-CCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCc
Q psy16848 327 LGKAFG-NIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFP 405 (514)
Q Consensus 327 ~sK~lg-~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 405 (514)
+||+++ +.||++++++++++.+......+.++ +.++..++++.++++.....++++++++++++++++.+.|++.|++
T Consensus 224 ~sK~~~g~~gG~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 302 (405)
T 2vi8_A 224 THKTLRGPRGGMILCQEQFAKQIDKAIFPGIQG-GPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFT 302 (405)
T ss_dssp SSSTTCCCSCEEEEECHHHHHHHHHHHTTTTCS-SCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred ccccCCCCCCeEEEEcHHHHHHHHhhhcccccC-CCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 999997 66799999999988887654443221 3356666776778877655577889999999999999999998887
Q ss_pred cccC--CCcEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCC---CCCCCCcEEEEEeCC----CCCHHHHHHHHHHHH
Q psy16848 406 VEHT--PSHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYP---TVPVGEEKIRLAPTP----FHTREMIDKFVTDLL 475 (514)
Q Consensus 406 ~~~~--~~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~---~~~~~~~~iRl~~~~----~~t~e~id~~~~~l~ 475 (514)
+..+ .++++++.++. ..+..++.+.| .++||.+.++..+ ..+...+++|++++. .++++++++++++|+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~ 381 (405)
T 2vi8_A 303 LVSGGTDNHLLLVDLRPQQLTGKTAEKVL-DEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIG 381 (405)
T ss_dssp EGGGSCSSSEEEEECGGGTCCHHHHHHHH-HHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHH
T ss_pred EecCCCCceEEEEEccCCCCCHHHHHHHH-HHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHH
Confidence 7643 45678888764 23567888888 4899999987632 112235689999985 578999999999999
Q ss_pred HHHHHcC
Q psy16848 476 AVWKSLD 482 (514)
Q Consensus 476 ~~l~~~~ 482 (514)
++++++.
T Consensus 382 ~~~~~~~ 388 (405)
T 2vi8_A 382 LVLKNVG 388 (405)
T ss_dssp HHHTCTT
T ss_pred HHHhccc
Confidence 9987653
No 119
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.95 E-value=6e-27 Score=243.54 Aligned_cols=360 Identities=16% Similarity=0.120 Sum_probs=238.2
Q ss_pred CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccccc
Q psy16848 16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVAN 88 (514)
Q Consensus 16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~ 88 (514)
+|+.++|+.++ .+++ +|++.+++.+++++.+ . +....+..+...+++++++++++ .+++++++||++|+
T Consensus 48 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~--~--~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggsea~ 123 (449)
T 3a8u_X 48 KGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLD--Y--SPGFQYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECA 123 (449)
T ss_dssp TCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCS--C--CCSSSCCCHHHHHHHHHHHTTSSTTEEEEEEESSHHHHH
T ss_pred CCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCC--C--ccccccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHH
Confidence 66778888643 3454 6899999999988743 1 11113445778999999999984 45678888999999
Q ss_pred ccchhhcccc------CCCceEEe-cCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEe--eccccc
Q psy16848 89 DSTLFTLGKM------IPGLHYIS-DAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAF--ETVHSM 159 (514)
Q Consensus 89 ~~~l~~l~~~------~~gd~v~~-~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~--~~~~~~ 159 (514)
..++.++... .++|.|++ ++.+|.....+++..+.+..... .....+.+... +..|..
T Consensus 124 ~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~-------------~~~~~~~~~~v~~~~~~~~ 190 (449)
T 3a8u_X 124 LTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKL-------------FGQPMQDVDHLPHTLLASN 190 (449)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTT-------------TCCCSCSEEEECCCCCGGG
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccc-------------cCCCCCCCeEecCCccccC
Confidence 9998876421 15677776 45555555556665553210000 00000000000 000000
Q ss_pred cCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEE
Q psy16848 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKII 239 (514)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~ 239 (514)
+. .|+. ...
T Consensus 191 -----------------------------~~-----~~~d-------------------------------------~~~ 199 (449)
T 3a8u_X 191 -----------------------------AY-----SRGM-------------------------------------PKE 199 (449)
T ss_dssp -----------------------------TT-----CSSS-------------------------------------CSS
T ss_pred -----------------------------cc-----ccCC-------------------------------------hHH
Confidence 00 0000 000
Q ss_pred ecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccC
Q psy16848 240 YRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERD 314 (514)
Q Consensus 240 v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~ 314 (514)
....+++.+++.+++...+++++|++++.+|++|.+.+ +++|.++|++||+++|+||+|+ +|..|..+ ..+..
T Consensus 200 ~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~--~~~~~ 277 (449)
T 3a8u_X 200 GGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMF--GADSF 277 (449)
T ss_dssp SHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS--HHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcch--hhhhc
Confidence 00001566667766432235788999998889998887 9999999999999999999996 66554311 11222
Q ss_pred CCccCceEEEcCCcccccCC---CeEEEecHHHHHHHHhhcC-------ceEeccCCcHHHHHHHHHHHHHhhhchHHHH
Q psy16848 315 GQLHNMDIISGTLGKAFGNI---GGYIVGTKNFIDTIRSYAA-------GFIFTTSLPPTVLAGAREAIRILSSQEGVEL 384 (514)
Q Consensus 315 ~~~~~~di~~~S~sK~lg~~---GG~l~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 384 (514)
+. .+|++ |+||++++. .|++++++++++.+..... ....+.+.+++.++++.++++.+.++ +.
T Consensus 278 ~~--~~di~--s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~---~~ 350 (449)
T 3a8u_X 278 GV--TPDLM--CIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKE---NL 350 (449)
T ss_dssp TC--CCSEE--EECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHT---TH
T ss_pred CC--CCCEE--EEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhc---CH
Confidence 32 57877 889999862 3888889999988876421 12235577899999999999977544 37
Q ss_pred HHHHHHHHHHHHHHHHhCC-Cccc---cCCCcEEEEEeCCCc-----cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEE
Q psy16848 385 RAKHQDIVAYLRNELIQIG-FPVE---HTPSHIIPIKIGNPA-----LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIR 455 (514)
Q Consensus 385 ~~~~~~~~~~l~~~L~~~g-~~~~---~~~~~~~~i~l~~~~-----~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iR 455 (514)
.++++++.+++.+.|++++ ++.. .+.+.++++.++... +..++.+.|+ ++||.+.++ + +++|
T Consensus 351 ~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~-------g-~~iR 421 (449)
T 3a8u_X 351 VQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALW-KAGFYVRFG-------G-DTLQ 421 (449)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHH-HHTEECEEE-------T-TEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccccccHHHHHHHHH-HCCcEEecC-------C-CEEE
Confidence 7888899999999998762 4432 345678888887532 2336888996 789999865 1 5899
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 456 LAPTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 456 l~~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
++++..++++++++++++|+++++++
T Consensus 422 is~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 422 FGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 99988899999999999999998764
No 120
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.95 E-value=1.2e-27 Score=246.08 Aligned_cols=338 Identities=13% Similarity=0.030 Sum_probs=228.6
Q ss_pred CceeeecccCCCCC-------ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC---cEEEEecccc
Q psy16848 17 NRVTCRLSSVQYKV-------PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE---AGLVFTSCYV 86 (514)
Q Consensus 17 g~~~~d~~~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~i~~~sGt~ 86 (514)
|..++|+..++|++ +|.+.+++.+..... ..++....|..++.+++++++.+..+.+ .+++++||++
T Consensus 36 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~---~~~Y~~~~g~~~lr~~la~~~~~~~~~~~~~~i~~t~g~~~ 112 (413)
T 3t18_A 36 REAVINAALGTLLDDKGKIIALPSVYDRLDEMDRSH---IASYAPIEGEKDYRKIVIDTLFGPYKPEGYISAIATPGGTG 112 (413)
T ss_dssp GGGCEECCSCCCBCTTSCBCCCHHHHHHHHHSCHHH---HHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHH
T ss_pred ccceEeccccCccCCCCCcCChHHHHHHHHhcCccc---ccCcCCCCCCHHHHHHHHHHHhcccCccccCcEEEcCccHH
Confidence 56889998888753 356666655432210 0112223355677777777776665555 6777888899
Q ss_pred ccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccch
Q psy16848 87 ANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL 166 (514)
Q Consensus 87 a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
|+..++.++.. +||.|+++.++|......++..|.+++.++..+.+
T Consensus 113 al~~~~~~~~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~-------------------------------- 158 (413)
T 3t18_A 113 AIRSAIFSYLD--EGDPLICHDYYWAPYRKICEEFGRNFKTFEFFTDD-------------------------------- 158 (413)
T ss_dssp HHHHHHHHHCC--SSCEEEEESSCCTHHHHHHHHHTCEEEEECCBCTT--------------------------------
T ss_pred HHHHHHHHhcC--CCCEEEECCCCcccHHHHHHHhCCeEEEeeccCCC--------------------------------
Confidence 99999988866 99999999999999988888888877765431000
Q ss_pred hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848 167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN 246 (514)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~ 246 (514)
. ..|.+
T Consensus 159 -----------------------------~---------------------------------------------~~d~~ 164 (413)
T 3t18_A 159 -----------------------------F---------------------------------------------AFNID 164 (413)
T ss_dssp -----------------------------S---------------------------------------------SBCHH
T ss_pred -----------------------------C---------------------------------------------CcCHH
Confidence 0 01455
Q ss_pred HHHHHHhhccCCCce-EEEEecC-CCCCccccC---HHHHHHHHH------HcCCEEEEecccc-ccccCCCCCCcccc-
Q psy16848 247 HLTQVLENMDVKIPK-LVAFETV-HSMTGAICP---LKELCEVSH------QHGALTFVDEVHA-VGLYGEHGAGIGER- 313 (514)
Q Consensus 247 ~l~~~l~~~~~~~~~-~vv~~~~-~nptG~~~~---l~~l~~l~~------~~gv~li~Dea~~-~g~~g~~~~~~~~~- 313 (514)
.+++.+++...++++ ++++++| +||||.+++ +++|+++|+ +||+++|+||+|. ++..+....++...
T Consensus 165 ~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~ 244 (413)
T 3t18_A 165 VYKEAIDEGIRDSDRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFEKF 244 (413)
T ss_dssp HHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGGGG
T ss_pred HHHHHHHHHhhcCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHHHH
Confidence 555655543222355 7888888 999999999 566666776 8999999999998 44333322222221
Q ss_pred CCCccC-ceEEEcCCcccccCCC---eEEEe---cHHHHHHHHhhcCceEec--cCCcHHHHHHHHHHHHHhh----hch
Q psy16848 314 DGQLHN-MDIISGTLGKAFGNIG---GYIVG---TKNFIDTIRSYAAGFIFT--TSLPPTVLAGAREAIRILS----SQE 380 (514)
Q Consensus 314 ~~~~~~-~di~~~S~sK~lg~~G---G~l~~---~~~~~~~l~~~~~~~~~~--~~~~~~~~~a~~~~l~~~~----~~~ 380 (514)
.+...+ .+++++||||.+|.+| ||+++ ++++++.+.........+ .+.+...+.++.++++... .+.
T Consensus 245 ~~~~~~~~~i~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 324 (413)
T 3t18_A 245 SNLPRNLFVVVAFSMSKSHTAYGLRSGAAVGISSSKEIIEEFEASLAHSARCNWSNGTHAAQNILIELERAENKKIYEQE 324 (413)
T ss_dssp TTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEEESCHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTSHHHHHHHHHH
T ss_pred hhcCCCeeEEEEEecCccCCCcCcCcEEEEEecCCHHHHHHHHHHHHHhhhccccCCChHHHHHHHHHhcChHHHHHHHH
Confidence 111111 1488899999999767 99998 899998887654322111 2467777777777665321 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccccCCCcE-EEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeC
Q psy16848 381 GVELRAKHQDIVAYLRNELIQIGFPVEHTPSHI-IPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPT 459 (514)
Q Consensus 381 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~ 459 (514)
.++++++++++++++.+.|++.|+++..+.+++ +++.+. +..++.+.| .++||.+.++ .+++|++++
T Consensus 325 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~l-~~~gv~v~~g--------~~~iRis~~ 392 (413)
T 3t18_A 325 LVDLRNMLKSRADVFVTAAKENKLTMIPYFGGFFTFIPTD---KAFDIVKDL-EKENIFTIPS--------AKGIRVAIC 392 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSSSCEEEECS---CHHHHHHHH-HHTTEECEEC--------SSEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccCCCceEEEEeCCC---CHHHHHHHH-HhCCEEEecC--------CCceEEEEe
Confidence 556788899999999999999888887777664 445442 467888888 5999999875 458999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHHc
Q psy16848 460 PFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 460 ~~~t~e~id~~~~~l~~~l~~~ 481 (514)
. .+++++ +++|.++++++
T Consensus 393 ~-~~~~~~---l~~l~~~l~~~ 410 (413)
T 3t18_A 393 G-VGEEKI---PKLVQRLAFYT 410 (413)
T ss_dssp T-SCGGGH---HHHHHHHHHHH
T ss_pred e-CCHHHH---HHHHHHHHHHH
Confidence 4 344544 67777766654
No 121
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.95 E-value=1.1e-26 Score=239.40 Aligned_cols=343 Identities=17% Similarity=0.096 Sum_probs=228.4
Q ss_pred cCCceeeecccCC---CCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC---CcEEEEeccc
Q psy16848 15 KSNRVTCRLSSVQ---YKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK---EAGLVFTSCY 85 (514)
Q Consensus 15 ~~g~~~~d~~~~~---~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~i~~~sGt 85 (514)
.+|+.++|+.++. +++ +|++++++.+++++... .+.+ .+..+...++++++++++|. +++++++||+
T Consensus 39 ~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~-~~~~---~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ 114 (419)
T 2eo5_A 39 VDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAH-AAAN---DFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGT 114 (419)
T ss_dssp TTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCC-CSCS---CSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHH
T ss_pred CCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCcc-cccc---ccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchH
Confidence 3677889997654 454 69999999999976432 1111 23356788999999999985 3567778899
Q ss_pred cccccchhhccccCCCceEEecCc-cchhhhhhhhcCCC-------------CeeeccCCChHHHHHHHHhcccCCCcEE
Q psy16848 86 VANDSTLFTLGKMIPGLHYISDAG-NHASMIQGIRNSSA-------------PKIIYRHNDVNHLTQVLENMDVKIPKLV 151 (514)
Q Consensus 86 ~a~~~~l~~l~~~~~gd~v~~~~~-~h~~~~~~~~~~~~-------------~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 151 (514)
+|+..++..+... +||.|++.++ +|.....+....+. .++.++.++
T Consensus 115 ea~~~ai~~~~~~-~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------------------- 174 (419)
T 2eo5_A 115 EAIEASIKVVKNT-GRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPN------------------- 174 (419)
T ss_dssp HHHHHHHHHHHTT-SCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCC-------------------
T ss_pred HHHHHHHHHHHHh-hCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCc-------------------
Confidence 9999998765421 2777777665 45455544444332 222222211
Q ss_pred EeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHh
Q psy16848 152 AFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIR 231 (514)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~ 231 (514)
.|.. +.|..
T Consensus 175 ----~~~~-----------------------------------~~g~~-------------------------------- 183 (419)
T 2eo5_A 175 ----PYRN-----------------------------------PWHIN-------------------------------- 183 (419)
T ss_dssp ----SSSC-----------------------------------TTCCC--------------------------------
T ss_pred ----cccc-----------------------------------ccccc--------------------------------
Confidence 0100 00000
Q ss_pred hCCC-CE-EEecCCChhHHH-HHHhhccC-CCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccc
Q psy16848 232 NSSA-PK-IIYRHNDVNHLT-QVLENMDV-KIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGL 302 (514)
Q Consensus 232 ~~g~-~~-~~v~~~d~~~l~-~~l~~~~~-~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~ 302 (514)
+. +. .... .|++.++ +.+++... +++++|++++++|++|...+ +++|.++|++||+++|+||+|+ ++.
T Consensus 184 --~~~~~~~~~~-~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~ 260 (419)
T 2eo5_A 184 --GYENPSELVN-RVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGR 260 (419)
T ss_dssp --TTTCHHHHHH-HHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred --ccccchhhHH-HHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCcc
Confidence 00 00 0000 0234455 55543211 34678888888888998665 9999999999999999999999 555
Q ss_pred cCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhh
Q psy16848 303 YGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSS 378 (514)
Q Consensus 303 ~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~ 378 (514)
.|..+ ..+..+. .+|++ ||||++++ | |+++++++++ .+ ... ...+.+.+++.++++.++++...+
T Consensus 261 ~g~~~--~~~~~~~--~~d~~--t~sK~~~~-G~~riG~~~~~~~~~-~~-~~~--~~~t~~~n~~~~~aa~aal~~~~~ 329 (419)
T 2eo5_A 261 TGKLF--AIENFNT--VPDVI--TLAKALGG-GIMPIGATIFRKDLD-FK-PGM--HSNTFGGNALACAIGSKVIDIVKD 329 (419)
T ss_dssp TSSSS--GGGGGTC--CCSEE--EECGGGGT-TTSCCEEEEEEGGGC-CC---------CCCCCHHHHHHHHHHHHHHHH
T ss_pred Ccchh--hHHhcCC--CCCEE--EecccccC-CccceEEEEEchHhh-cC-Ccc--cCCCCCCCHHHHHHHHHHHHHHHH
Confidence 44311 1122232 56777 89999986 5 9999988876 55 212 222457789999999999986532
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCccccCCCcEEEEEeC-CCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEE
Q psy16848 379 QEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIG-NPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLA 457 (514)
Q Consensus 379 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~i~l~-~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~ 457 (514)
.+++++++++++.+.|+++ +....+.+.++++.+. +..... +.+.|+ ++||.+.++. .+++|++
T Consensus 330 -----~~~~~~~~~~~l~~~L~~~-~~~~~~~g~~~~i~~~~~~~~~~-~~~~l~-~~Gv~v~~~~-------~~~lRis 394 (419)
T 2eo5_A 330 -----LLPHVNEIGKIFAEELQGL-ADDVRGIGLAWGLEYNEKKVRDR-IIGESF-KRGLLLLPAG-------RSAIRVI 394 (419)
T ss_dssp -----HHHHHHHHHHHHHHHHTTS-SSEEEEETTEEEEECSCHHHHHH-HHHHHH-HTTEECEEET-------TTEEEEC
T ss_pred -----HHHHHHHHHHHHHHHHHHh-hhheEeeeEEEEEEEecCccHHH-HHHHHH-HCCCEEecCC-------CCEEEEE
Confidence 7788899999999999886 4444566778888874 222345 888886 8999998652 4689999
Q ss_pred eCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 458 PTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 458 ~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
++..+|++++++++++|+++++++
T Consensus 395 ~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 395 PPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhc
Confidence 998899999999999999988764
No 122
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.95 E-value=2.6e-27 Score=246.25 Aligned_cols=343 Identities=13% Similarity=0.109 Sum_probs=232.1
Q ss_pred cCCceeeecccCC---CCC--ChhHH-H-HHHH---HHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC---CCcEEEE
Q psy16848 15 KSNRVTCRLSSVQ---YKV--PKGGR-K-CLGE---ALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ---KEAGLVF 81 (514)
Q Consensus 15 ~~g~~~~d~~~~~---~~~--~~~~~-~-a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~i~~ 81 (514)
.+|+.|+||.++. .++ ||++. + ++.+ ++++... .+ + ....+...+++++++++++ .++++|+
T Consensus 51 ~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~-~~-~---~~~~~~~~~la~~la~~~~~~~~~~v~~~ 125 (449)
T 2cjg_A 51 ITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKP-SN-S---DVYSVAMARFVETFARVLGDPALPHLFFV 125 (449)
T ss_dssp TTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCC-CT-T---TCCCHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred CCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCC-CC-c---ccCCHHHHHHHHHHHHhcCCCCCCEEEEe
Confidence 3567778885433 233 79999 9 9999 7776421 11 1 1245678899999999984 5678888
Q ss_pred eccccccccchhhccc-cC----------C-CceEEecCcc-chhhhhhhhcCCC-------------CeeeccCCC--h
Q psy16848 82 TSCYVANDSTLFTLGK-MI----------P-GLHYISDAGN-HASMIQGIRNSSA-------------PKIIYRHND--V 133 (514)
Q Consensus 82 ~sGt~a~~~~l~~l~~-~~----------~-gd~v~~~~~~-h~~~~~~~~~~~~-------------~~~~~~~~d--~ 133 (514)
+||++|+..++..+.. .+ + ||.|++.++. |.....++...+. .++.++.+| .
T Consensus 126 ~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 205 (449)
T 2cjg_A 126 EGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGL 205 (449)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTC
T ss_pred CchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchh
Confidence 9999999999875431 11 2 7777777664 5445544454443 111111111 0
Q ss_pred HHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHh
Q psy16848 134 NHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG 213 (514)
Q Consensus 134 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~ 213 (514)
+.- . ...
T Consensus 206 ~~~-~-~~~----------------------------------------------------------------------- 212 (449)
T 2cjg_A 206 DEP-A-MAA----------------------------------------------------------------------- 212 (449)
T ss_dssp CHH-H-HHH-----------------------------------------------------------------------
T ss_pred hcc-c-cch-----------------------------------------------------------------------
Confidence 000 0 000
Q ss_pred hccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcC
Q psy16848 214 TLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHG 289 (514)
Q Consensus 214 ~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~g 289 (514)
-...+.+.+++.+++. .+++++|++++++|++|...+ +++|+++|++||
T Consensus 213 --------------------------~~~~~~~~le~~i~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g 265 (449)
T 2cjg_A 213 --------------------------LEAEALRQARAAFETR-PHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFD 265 (449)
T ss_dssp --------------------------HHHHHHHHHHHHHHHS-TTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTT
T ss_pred --------------------------hhHHHHHHHHHHHHhc-CCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCC
Confidence 0000234466666542 356899999999999997665 999999999999
Q ss_pred CEEEEecccc-ccccCCCCCCccccCCCccCceEEEcCCcccccCCCeEEEecHHHHHHHHh--hc-CceEeccCCcHHH
Q psy16848 290 ALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRS--YA-AGFIFTTSLPPTV 365 (514)
Q Consensus 290 v~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~GG~l~~~~~~~~~l~~--~~-~~~~~~~~~~~~~ 365 (514)
+++|+||+|+ +|..|..+ ..+..+. .+|++ |+||++ + -|++++++++++.+.. .. .....+.+.+++.
T Consensus 266 ~lli~DEv~~g~g~~g~~~--~~~~~~~--~~di~--t~sK~l-~-iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~ 337 (449)
T 2cjg_A 266 ALLIFDEVQTGCGLTGTAW--AYQQLDV--APDIV--AFGKKT-Q-VCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTD 337 (449)
T ss_dssp CEEEEECTTTTTTTTSSSS--THHHHTC--CCSEE--EECGGG-S-SEEEEECGGGGGSTTCTTTSTTSSCCSSSSCHHH
T ss_pred cEEEEeccccCCCccCcce--eecccCC--CceEE--EecCcc-c-EEEEEECHHHhhhhhhcccCCcccccCCCCCHHH
Confidence 9999999999 55554321 1122333 67887 789999 4 5788888888775332 11 1112245778999
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC--C----CccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEE
Q psy16848 366 LAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI--G----FPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYV 439 (514)
Q Consensus 366 ~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g----~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v 439 (514)
++++.++++.+.++ ++.++++++++++.+.|+++ + +....+.+.++.+.+++.....++++.|+ ++||.+
T Consensus 338 ~~aa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~-~~Gv~v 413 (449)
T 2cjg_A 338 MVRARRILEVIEAE---GLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPTTADRDELIRQLW-QRAVIV 413 (449)
T ss_dssp HHHHHHHHHHHHHH---THHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEECSSHHHHHHHHHHHH-HTTEEC
T ss_pred HHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEECChHHHHHHHHHHH-HCCeEE
Confidence 99999999977543 36788888888988888764 2 32345567788888875445678999997 899999
Q ss_pred ecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 440 QPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 440 ~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
.++ +.+++|++++..+|++++++++++|+++++++
T Consensus 414 ~~~-------g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 414 LPA-------GADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp EEE-------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ecC-------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 864 24689999998999999999999999988753
No 123
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.95 E-value=6.2e-27 Score=243.00 Aligned_cols=228 Identities=16% Similarity=0.130 Sum_probs=163.1
Q ss_pred ChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCc
Q psy16848 244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM 320 (514)
Q Consensus 244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~ 320 (514)
|.+.+++.+++ .+++++++++++|+||||.++| +++|.++|++||+++|+||+|+.+..+....+.. ....+.
T Consensus 192 d~~~l~~~l~~-~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~---~~~~~~ 267 (444)
T 3if2_A 192 DFEALENLPAL-KEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAH---LNWDNN 267 (444)
T ss_dssp CHHHHHTCHHH-HTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCC---CCCCTT
T ss_pred CHHHHHHHHHh-cCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCccccccccccc---ccCCCC
Confidence 44455544322 2456899999999999999999 8999999999999999999998433211111111 112367
Q ss_pred eEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhh-hchHHH-HHHHHHHHHHHH
Q psy16848 321 DIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS-SQEGVE-LRAKHQDIVAYL 395 (514)
Q Consensus 321 di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~-~~~~~~~~~~~l 395 (514)
+++++|+||. +.+| ||+++++++++.+....... +.+.++..+.++...++... .....+ ++++++++++.+
T Consensus 268 ~i~~~S~sK~-~~~G~r~G~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 344 (444)
T 3if2_A 268 TILCFSLSKI-GLPGMRTGIIVADAKVIEAVSAMNAVV--NLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLA 344 (444)
T ss_dssp EEEEEESTTT-TCGGGCCEEEECCHHHHHHHHHHHHHH--HSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH
T ss_pred EEEEechhhc-cCCCCceEEEEECHHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence 8999999997 4445 99999999999887765544 33566677777777766321 112222 566777888888
Q ss_pred HHHHHhC----CCccccCC-CcEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCC-------CCcEEEEEeCCCC
Q psy16848 396 RNELIQI----GFPVEHTP-SHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPV-------GEEKIRLAPTPFH 462 (514)
Q Consensus 396 ~~~L~~~----g~~~~~~~-~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~-------~~~~iRl~~~~~~ 462 (514)
.+.|.+. ++.+..+. +.++++.++. ..+..++.+.| .++||.+.++..|.... ..+++|++++.
T Consensus 345 ~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l-~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~-- 421 (444)
T 3if2_A 345 VKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPISTLDLYERL-KAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA-- 421 (444)
T ss_dssp HHHHHHHSSSSSEEEECCCBSSEEEEEETTCSSCHHHHHHHH-HHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--
T ss_pred HHHHHHhcccCCceEecCCccEEEEEEcCCCCCCHHHHHHHH-HHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC--
Confidence 8877663 44444444 4577788875 45688899999 49999999998764321 23699999995
Q ss_pred CHHHHHHHHHHHHHHHHHc
Q psy16848 463 TREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 463 t~e~id~~~~~l~~~l~~~ 481 (514)
+++++++++++|+++++++
T Consensus 422 ~~e~i~~~l~~l~~~~~~~ 440 (444)
T 3if2_A 422 DEQTLIDGIKVIGEVVREL 440 (444)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998765
No 124
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.95 E-value=9.1e-27 Score=234.70 Aligned_cols=282 Identities=17% Similarity=0.110 Sum_probs=208.4
Q ss_pred HHHHHHHHHhHcCCC--cEEEEeccccccccchhhccccCCC-ceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848 62 HEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFTLGKMIPG-LHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ 138 (514)
Q Consensus 62 ~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~l~~~~~g-d~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~ 138 (514)
..++++.++++++.+ ..++++++++++..++.++.. +| |.|+++.++|.+....++..|.+++.++..+.
T Consensus 60 ~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~~--~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~----- 132 (356)
T 1fg7_A 60 PKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCE--PGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDN----- 132 (356)
T ss_dssp CHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCC--TTTCEEEECSSSCTHHHHHHHHHTCEEEECCCCTT-----
T ss_pred HHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHhC--CCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCCCC-----
Confidence 578999999999864 455556667888888888865 99 99999999999988777777776655443100
Q ss_pred HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848 139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP 218 (514)
Q Consensus 139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~ 218 (514)
.
T Consensus 133 ---------------------------------------------------------~---------------------- 133 (356)
T 1fg7_A 133 ---------------------------------------------------------W---------------------- 133 (356)
T ss_dssp ---------------------------------------------------------S----------------------
T ss_pred ---------------------------------------------------------C----------------------
Confidence 0
Q ss_pred ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCH---HHHHHHHHHcCCEEEEe
Q psy16848 219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL---KELCEVSHQHGALTFVD 295 (514)
Q Consensus 219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l---~~l~~l~~~~gv~li~D 295 (514)
..|.+.++ +..+ +++++++++++||||.++|. ++|.++|+ +|+++|+|
T Consensus 134 -----------------------~~d~~~l~----~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~D 184 (356)
T 1fg7_A 134 -----------------------QLDLQGIS----DKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVAD 184 (356)
T ss_dssp -----------------------CCCHHHHH----TSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEE
T ss_pred -----------------------CCCHHHHH----HHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEE
Confidence 01233333 3323 58899999999999999995 55556666 99999999
Q ss_pred ccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHH
Q psy16848 296 EVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREA 372 (514)
Q Consensus 296 ea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~ 372 (514)
|+|+.+..+ .++..... ..+.++++.|+||++|.+| ||+++++++++.+......+ +.+++.+.++.++
T Consensus 185 e~~~~~~~~---~~~~~~~~-~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~----~~~~~~~~a~~~~ 256 (356)
T 1fg7_A 185 EAYIEFCPQ---ASLAGWLA-EYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPY----PLSTPVADIAAQA 256 (356)
T ss_dssp CTTGGGSGG---GCSGGGTT-TCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHHSCSS----CSCHHHHHHHHHH
T ss_pred ccchhhcCC---CcHHHHHh-hCCCEEEEecchHhhcCchhhhEEEEeCHHHHHHHHHhcCCC----CCCHHHHHHHHHH
Confidence 999943311 12222211 2356899999999998667 99999999999888765444 5778888888888
Q ss_pred HHHhhhchHHHHHHHHHHHHHHHHHHHHhCC--CccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEec-ccCCCCCC
Q psy16848 373 IRILSSQEGVELRAKHQDIVAYLRNELIQIG--FPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQP-INYPTVPV 449 (514)
Q Consensus 373 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~-~~~~~~~~ 449 (514)
++....+++++.+++++++++++.+.|++++ +.+.++.+.++++.++ +..++.+.| .++||.+++ +..+..
T Consensus 257 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~L-~~~gI~v~~~g~~~~~-- 330 (356)
T 1fg7_A 257 LSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK---ASSAVFKSL-WDQGIILRDQNKQPSL-- 330 (356)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET---THHHHHHHH-HHTTEECEECTTSTTC--
T ss_pred hcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECC---CHHHHHHHH-HHCCEEEEECCCCCCC--
Confidence 7643212367788899999999999999885 3444556778888886 467899999 499999998 665432
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848 450 GEEKIRLAPTPFHTREMIDKFVTDLLA 476 (514)
Q Consensus 450 ~~~~iRl~~~~~~t~e~id~~~~~l~~ 476 (514)
++++|++++ +++|+++++++|++
T Consensus 331 -~~~iRis~~---~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 331 -SGCLRITVG---TREESQRVIDALRA 353 (356)
T ss_dssp -TTEEEEECC---CHHHHHHHHHHHHT
T ss_pred -CCeEEEEeC---CHHHHHHHHHHHHh
Confidence 359999998 68999999999875
No 125
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.95 E-value=3.5e-27 Score=241.76 Aligned_cols=342 Identities=18% Similarity=0.147 Sum_probs=238.4
Q ss_pred ceeeecc-cCCCCCChhHHHHHHHHHHH-hCCCCCCcCcccCcch--HHH-HHHHHHHhHcCCCcE-EEEeccccccccc
Q psy16848 18 RVTCRLS-SVQYKVPKGGRKCLGEALEK-FGTGAGGTRNISGNSL--FHE-KLEEDVAKLHQKEAG-LVFTSCYVANDST 91 (514)
Q Consensus 18 ~~~~d~~-~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~--~~~-~~~~~la~~~~~~~~-i~~~sGt~a~~~~ 91 (514)
..++|+. +..++ +|++.+++.+++.. +...++.+....|... ..+ ..++++++++|.+.. ++++|||+|+..+
T Consensus 23 ~~~i~~~~~~~~~-~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~a~~~~ 101 (407)
T 2dkj_A 23 REGLELIASENFV-SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQANMAV 101 (407)
T ss_dssp HTSEECCTTCCCC-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHH
T ss_pred hcceeeccCCCCC-CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcceEEecchHHHHHHH
Confidence 4567774 44555 89999999998864 3333332222223322 222 234589999998766 6678999999999
Q ss_pred hhhccccCCCceEEecCccchhhh---hhhhcCCCC--eeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccch
Q psy16848 92 LFTLGKMIPGLHYISDAGNHASMI---QGIRNSSAP--KIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL 166 (514)
Q Consensus 92 l~~l~~~~~gd~v~~~~~~h~~~~---~~~~~~~~~--~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
+.++.. +||.|+++.++|.+.. .+++..|.. ++.++..
T Consensus 102 ~~~~~~--~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------------------------------- 144 (407)
T 2dkj_A 102 YMALME--PGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVR----------------------------------- 144 (407)
T ss_dssp HHHHCC--TTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCC-----------------------------------
T ss_pred HHHhcC--CCCEEEEecccccCccchHHHHHhcCceEEEEecCCC-----------------------------------
Confidence 988865 9999999999998874 233332321 1111000
Q ss_pred hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848 167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN 246 (514)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~ 246 (514)
+ .. ...|.+
T Consensus 145 -----------------~---------~~---------------------------------------------~~~d~~ 153 (407)
T 2dkj_A 145 -----------------P---------DT---------------------------------------------ELIDLE 153 (407)
T ss_dssp -----------------T---------TT---------------------------------------------SSCCHH
T ss_pred -----------------c---------cc---------------------------------------------CccCHH
Confidence 0 00 012566
Q ss_pred HHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcC
Q psy16848 247 HLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT 326 (514)
Q Consensus 247 ~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S 326 (514)
.+++.+++. +++++++++++|| ...++++|.++|++||+++|+||+|+.|...... .. ... ..+|++++|
T Consensus 154 ~l~~~l~~~---~~~~v~~~~p~~~--~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-~~-~~~---~~~di~~~s 223 (407)
T 2dkj_A 154 EVRRLALEH---RPKVIVAGASAYP--RFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGL-HP-NPL---PYAHVVTST 223 (407)
T ss_dssp HHHHHHHHH---CCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTC-SC-CCT---TTCSEEEEE
T ss_pred HHHHHHhhc---CCeEEEEeccccC--CCCCHHHHHHHHHHcCCEEEEEccccccccccCc-cC-Ccc---ccccEEEEe
Confidence 677766532 4688888888886 6778999999999999999999999975532110 00 011 137999999
Q ss_pred Cccccc-CCCeEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16848 327 LGKAFG-NIGGYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGF 404 (514)
Q Consensus 327 ~sK~lg-~~GG~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 404 (514)
+||+++ +.||+++++ +++++.+......+. ..+.++..++++.++++.....++++++++++++++++.+.|++.|+
T Consensus 224 ~sK~l~g~~~G~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 302 (407)
T 2dkj_A 224 THKTLRGPRGGLILSNDPELGKRIDKLIFPGI-QGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRGY 302 (407)
T ss_dssp SSGGGCCCSCEEEEESCHHHHHHHHHHHTTTT-CSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccCCCCCceEEEECCHHHHHHHHhhhcccc-cCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999885 456999999 799888876554432 12345556667778887764567788999999999999999999888
Q ss_pred cccc--CCCcEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCC---CCCCCcEEEEEeCC----CCCHHHHHHHHHHH
Q psy16848 405 PVEH--TPSHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPT---VPVGEEKIRLAPTP----FHTREMIDKFVTDL 474 (514)
Q Consensus 405 ~~~~--~~~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~---~~~~~~~iRl~~~~----~~t~e~id~~~~~l 474 (514)
++.. +.++++++.++. ..+..++.+.| .++||.+.++..+. .+...+++|++++. .++++++++++++|
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l 381 (407)
T 2dkj_A 303 RIVTGGTDNHLFLVDLRPKGLTGKEAEERL-DAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELI 381 (407)
T ss_dssp EEGGGSCSSSEEEEECGGGTCCHHHHHHHH-HHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHH
T ss_pred eeecCCCCceEEEEECcccCCCHHHHHHHH-HHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHH
Confidence 7763 456788888864 23577888888 48999999876431 12235689999964 26899999999999
Q ss_pred HHHHHH
Q psy16848 475 LAVWKS 480 (514)
Q Consensus 475 ~~~l~~ 480 (514)
++++++
T Consensus 382 ~~~~~~ 387 (407)
T 2dkj_A 382 DRALLE 387 (407)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999887
No 126
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.95 E-value=1.8e-26 Score=242.71 Aligned_cols=337 Identities=14% Similarity=0.116 Sum_probs=231.1
Q ss_pred hHHHHHHHHHHHhCC-CCCCcCcccCcchHHHHHHHHHHhHcC-----CCcEEEEeccccccccchhhccccCCC----c
Q psy16848 33 GGRKCLGEALEKFGT-GAGGTRNISGNSLFHEKLEEDVAKLHQ-----KEAGLVFTSCYVANDSTLFTLGKMIPG----L 102 (514)
Q Consensus 33 ~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~la~~~~-----~~~~i~~~sGt~a~~~~l~~l~~~~~g----d 102 (514)
++.+++.++++..+. ....+....|..++.+++++.+.+..| .+..++++++++++..++.++.. +| |
T Consensus 105 ~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~--~gd~~~d 182 (498)
T 3ihj_A 105 DAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVS--GGGKSRT 182 (498)
T ss_dssp HHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCC--CCGGGSE
T ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcC--CCCCCCC
Confidence 444667778876542 233444455667788888888877764 23456566667788888888876 66 4
Q ss_pred eEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEe
Q psy16848 103 HYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFV 182 (514)
Q Consensus 103 ~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (514)
.|+++.+.|.....+++..|++++.++.+..
T Consensus 183 ~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~------------------------------------------------- 213 (498)
T 3ihj_A 183 GVMIPIPQYPLYSAVISELDAIQVNYYLDEE------------------------------------------------- 213 (498)
T ss_dssp EEEEEESCCTHHHHHHHHTTCEEEEEECBGG-------------------------------------------------
T ss_pred EEEEeCCCchhHHHHHHHcCCEEEEeecccc-------------------------------------------------
Confidence 9999999999999999998988887765310
Q ss_pred eccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCC-Cce
Q psy16848 183 DEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVK-IPK 261 (514)
Q Consensus 183 ~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~-~~~ 261 (514)
++++ -|++.+++.+++.... +++
T Consensus 214 -----------~~~~---------------------------------------------~d~~~le~~l~~~~~~~~~k 237 (498)
T 3ihj_A 214 -----------NCWA---------------------------------------------LNVNELRRAVQEAKDHCDPK 237 (498)
T ss_dssp -----------GTTB---------------------------------------------CCHHHHHHHHHHHTTTSEEE
T ss_pred -----------ccCC---------------------------------------------CCHHHHHHHHHhhhccCCCe
Confidence 0000 1455555555543222 478
Q ss_pred EEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC--CCCCccccCC-C-----ccCceEEEcCCccc
Q psy16848 262 LVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE--HGAGIGERDG-Q-----LHNMDIISGTLGKA 330 (514)
Q Consensus 262 ~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~--~~~~~~~~~~-~-----~~~~di~~~S~sK~ 330 (514)
++++++|+||||.+++ +++|+++|++||+++|+||+|..+.++. ...++..... . .....++++||||.
T Consensus 238 ~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~ 317 (498)
T 3ihj_A 238 VLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKG 317 (498)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSS
T ss_pred EEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccc
Confidence 9999999999999999 6889999999999999999999655532 2222211100 0 01235888999999
Q ss_pred c-cCCC---eEEE---ecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHH-------h--hhchHHHHHHHHHHHHHH
Q psy16848 331 F-GNIG---GYIV---GTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRI-------L--SSQEGVELRAKHQDIVAY 394 (514)
Q Consensus 331 l-g~~G---G~l~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~-------~--~~~~~~~~~~~~~~~~~~ 394 (514)
+ |.+| ||++ .++++++.+...... ....+...+.++..+++. + ......++++++++++++
T Consensus 318 ~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~ 394 (498)
T 3ihj_A 318 YMGECGYRGGYMEVINLHPEIKGQLVKLLSV---RLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKL 394 (498)
T ss_dssp TTCCSSSCCEEEEEESCCHHHHHHHHHHHHH---SCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcccceEEEEEecCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 9 5445 9987 588888888765432 234566666666665531 0 012345677889999999
Q ss_pred HHHHHHhC-CCccccCCCcEEE-EEeCCC-----------ccHHHH-HHHHHHhCCeEEecccCCCCCCCCcEEEEEeCC
Q psy16848 395 LRNELIQI-GFPVEHTPSHIIP-IKIGNP-----------ALNTKI-CDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTP 460 (514)
Q Consensus 395 l~~~L~~~-g~~~~~~~~~~~~-i~l~~~-----------~~~~~~-~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~ 460 (514)
+.+.|+++ |+.+..+.++++. +.+..+ .+..++ +..+++++||.+.|+..|....+..++|+++.
T Consensus 395 l~~~L~~~~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~- 473 (498)
T 3ihj_A 395 TEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTIL- 473 (498)
T ss_dssp HHHHHHTSTTEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECC-
T ss_pred HHHHHhcCCCcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeC-
Confidence 99999998 8888777776543 344321 123443 56665689999999998765556789999996
Q ss_pred CCCHHHHHHHHHHHHHHHHHc
Q psy16848 461 FHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 461 ~~t~e~id~~~~~l~~~l~~~ 481 (514)
.+++++++++++|+++++++
T Consensus 474 -~~~e~l~~~i~~L~~~~~~~ 493 (498)
T 3ihj_A 474 -PPVEKLKTVLQKVKDFHINF 493 (498)
T ss_dssp -SCHHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHH
Confidence 78999999999999988765
No 127
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.95 E-value=1.4e-26 Score=233.04 Aligned_cols=325 Identities=14% Similarity=0.078 Sum_probs=229.1
Q ss_pred eeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC---cEEEEeccccccccchhhcc
Q psy16848 20 TCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE---AGLVFTSCYVANDSTLFTLG 96 (514)
Q Consensus 20 ~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~i~~~sGt~a~~~~l~~l~ 96 (514)
++.|......-+|++.+++.+.+.....+.+ . ......+..+++++++++++|.+ .+++++|||+|+..++.++.
T Consensus 5 ~~~~~p~p~~~~~~v~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~ 82 (362)
T 3ffr_A 5 KIYFTPGPSELYPTVRQHMITALDEKIGVIS-H-RSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV 82 (362)
T ss_dssp CEEECSSSCCCCTTHHHHHHHHHHTTTTTSC-T-TSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC
T ss_pred ceeccCCCcCCCHHHHHHHHHHhcCCccCcC-C-CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc
Confidence 3455444445578999888888875221111 1 11123467788999999999863 35667778889999998887
Q ss_pred ccCCCceEEecCccchh-hhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhh
Q psy16848 97 KMIPGLHYISDAGNHAS-MIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ 175 (514)
Q Consensus 97 ~~~~gd~v~~~~~~h~~-~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (514)
. + +.+++....|.. ....++..|.+++.++.++
T Consensus 83 ~--~-~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~------------------------------------------- 116 (362)
T 3ffr_A 83 E--K-KSFHCVNGSFSKRFYEFAGELGREAYKEEAAF------------------------------------------- 116 (362)
T ss_dssp S--S-EEEEEECSHHHHHHHHHHHHTTCEEEEEECCT-------------------------------------------
T ss_pred C--C-cEEEEcCcHHHHHHHHHHHHhCCCeEEEecCC-------------------------------------------
Confidence 5 6 656665555542 1223333344433322100
Q ss_pred cCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhc
Q psy16848 176 HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENM 255 (514)
Q Consensus 176 ~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~ 255 (514)
+. ..|.+.++
T Consensus 117 -------------------~~---------------------------------------------~~d~~~l~------ 126 (362)
T 3ffr_A 117 -------------------GK---------------------------------------------GFYPADIT------ 126 (362)
T ss_dssp -------------------TC---------------------------------------------CCCGGGCC------
T ss_pred -------------------CC---------------------------------------------CCCHHHHh------
Confidence 00 01333333
Q ss_pred cCCCceEEEEecCCCCCccccCHHHHHHHHHHc-CCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc-C
Q psy16848 256 DVKIPKLVAFETVHSMTGAICPLKELCEVSHQH-GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG-N 333 (514)
Q Consensus 256 ~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~-gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg-~ 333 (514)
.+++++++++++++||+|.++|+++|.++|++| |+++|+|++|+.+.. +... ...|++++|+||+++ +
T Consensus 127 ~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~--------~~~~--~~~d~~~~s~~K~~~~~ 196 (362)
T 3ffr_A 127 VPADAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYP--------KFDW--TKIDSVFFSVQKCFGLP 196 (362)
T ss_dssp CCTTCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSS--------CCCT--TSCSEEEEETTSTTCCC
T ss_pred ccCCccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCc--------ccCh--hHCcEEEEecccccCCC
Confidence 356789999999999999999999999999999 999999999986543 1111 127899999999998 5
Q ss_pred CC-eEEEecHHHHHHHHhhcCc-------------------eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q psy16848 334 IG-GYIVGTKNFIDTIRSYAAG-------------------FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVA 393 (514)
Q Consensus 334 ~G-G~l~~~~~~~~~l~~~~~~-------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 393 (514)
.| |+++.++++++.+.....+ .....+.+...+.++.++++.+...++++++++.+++++
T Consensus 197 ~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~ 276 (362)
T 3ffr_A 197 AGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAA 276 (362)
T ss_dssp SCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CceEEEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 67 8999999988877654320 000224566777777788886655567889999999999
Q ss_pred HHHHHHHhC-CCccccC-----CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHH
Q psy16848 394 YLRNELIQI-GFPVEHT-----PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI 467 (514)
Q Consensus 394 ~l~~~L~~~-g~~~~~~-----~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~i 467 (514)
++.+.|+++ |+.+..+ ...++++.+++ +..++.+.|. ++||.+.++..+ .+++++|++++..++++++
T Consensus 277 ~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~-~~gi~~~~g~~~---~~~~~iRis~~~~~~~e~i 350 (362)
T 3ffr_A 277 LINTYIESSKVFSFGVEDAKLRSMTTIVANTTM--LPGEINKILE-PFDMAVGAGYGS---KKETQIRIANFPAHSLEQV 350 (362)
T ss_dssp HHHHHHHHCSSEEESSSCGGGBCSSEEEEEESS--CHHHHHHHHG-GGTEEEEECSGG---GTTTEEEEECCTTSCHHHH
T ss_pred HHHHHHHHccCceeccCChhhcCCceEEEecCC--CHHHHHHHHH-HCCeEEecCccc---cCCCEEEEECCCCCCHHHH
Confidence 999999998 8776542 23467777776 6789999996 779999987543 2357999999988999999
Q ss_pred HHHHHHHHHHH
Q psy16848 468 DKFVTDLLAVW 478 (514)
Q Consensus 468 d~~~~~l~~~l 478 (514)
++++++|++++
T Consensus 351 ~~l~~~l~~~~ 361 (362)
T 3ffr_A 351 HKLVQTLKEKI 361 (362)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998763
No 128
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.95 E-value=5.8e-28 Score=246.97 Aligned_cols=340 Identities=17% Similarity=0.146 Sum_probs=216.9
Q ss_pred CCceeeecccCCCCCChhHHHHHHHHHHHh-CCCCCCcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccch
Q psy16848 16 SNRVTCRLSSVQYKVPKGGRKCLGEALEKF-GTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTL 92 (514)
Q Consensus 16 ~g~~~~d~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l 92 (514)
++..++|++++. ..+|++.+++.+++.+. +..........+..+..+++++++++++|.+ .+++++||++|+..++
T Consensus 19 ~~~iyld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~ 97 (400)
T 3vax_A 19 SHMTYLDAAATT-RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIAL 97 (400)
T ss_dssp ---CCCCCCCCS-SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHH
T ss_pred CCcEEecCCCCC-CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHH
Confidence 334567776554 34789999999999853 2221111112223566889999999999875 5677777889999999
Q ss_pred hhcc----ccCCCc-eEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848 93 FTLG----KMIPGL-HYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK 167 (514)
Q Consensus 93 ~~l~----~~~~gd-~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
.++. + +|| .|+++.++|+++...++..
T Consensus 98 ~~l~~~~~~--~gd~~Vl~~~~~~~~~~~~~~~~---------------------------------------------- 129 (400)
T 3vax_A 98 LGLAPYGER--TGRRHIITSAIEHKAVLEPLEHL---------------------------------------------- 129 (400)
T ss_dssp HTTHHHHHH--HTCCEEEEETTSCHHHHHHHHHH----------------------------------------------
T ss_pred HHHHHhhcc--CCCCEEEECccccHhHHHHHHHH----------------------------------------------
Confidence 8886 5 999 9999999999876544321
Q ss_pred HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC-Chh
Q psy16848 168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN-DVN 246 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~-d~~ 246 (514)
...|++++.++.+ +..
T Consensus 130 ---------------------------------------------------------------~~~g~~~~~v~~~~~~~ 146 (400)
T 3vax_A 130 ---------------------------------------------------------------AGRGFEVDFLTPGPSGR 146 (400)
T ss_dssp ---------------------------------------------------------------HTTTCEEEEECCCTTCC
T ss_pred ---------------------------------------------------------------HhcCCeEEEEccCCCCC
Confidence 1123344444421 222
Q ss_pred HHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcC
Q psy16848 247 HLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT 326 (514)
Q Consensus 247 ~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S 326 (514)
.+.+.+++..+++++++++++++||+|.+.|+++|.++|++||+++|+|++|+.+... .+.. .. +|++++|
T Consensus 147 ~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~------~~~~--~~-~d~~~~s 217 (400)
T 3vax_A 147 ISVEGVMERLRPDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVP------GDLT--TP-IDMISIS 217 (400)
T ss_dssp CCHHHHHTTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSG------GGGG--SC-CSEEEEE
T ss_pred cCHHHHHHhcCCCceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCC------cChh--hc-CcEEEEe
Confidence 2233444444567899999999999999999999999999999999999999865431 1111 22 7899999
Q ss_pred CcccccCCC-eEEE-ecHH-HH---HHHHhhcCc-----eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy16848 327 LGKAFGNIG-GYIV-GTKN-FI---DTIRSYAAG-----FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYL 395 (514)
Q Consensus 327 ~sK~lg~~G-G~l~-~~~~-~~---~~l~~~~~~-----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 395 (514)
+||.+|+.| |+++ .+++ +. ..+...... .....+.+...++++.++++.+. +++++++++++++++++
T Consensus 218 ~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l 296 (400)
T 3vax_A 218 GHKIGAPKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFE-AEHAQWQVAAQDLRSRL 296 (400)
T ss_dssp TGGGTSCSSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH-HSHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHH
Confidence 999878766 8877 7651 11 111111110 00022456777777778887663 46788999999999999
Q ss_pred HHHHHhCCCccccCCC----cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC------------CC----CcEEE
Q psy16848 396 RNELIQIGFPVEHTPS----HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP------------VG----EEKIR 455 (514)
Q Consensus 396 ~~~L~~~g~~~~~~~~----~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~------------~~----~~~iR 455 (514)
.+.|+..++.+..+.+ +++.+.++. .+..++.+.| . +||.++++..|... .. .+++|
T Consensus 297 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~L-~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR 373 (400)
T 3vax_A 297 LAGLASTSFQVNGDQDHVVPHILNLSFED-VDAEAFLVTL-K-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLR 373 (400)
T ss_dssp HHHHTTTTCEECSCTTSBCTTEEEEECTT-CCHHHHHHHH-H-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEE
T ss_pred HHhhCCCCEEEeCCcccCCCCEEEEEeCC-CCHHHHHHHH-h-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEE
Confidence 9999833777655543 477777764 4577888888 5 89998876533210 11 47999
Q ss_pred EEe-CCCCCHHHHHHHHHHHHHHHHH
Q psy16848 456 LAP-TPFHTREMIDKFVTDLLAVWKS 480 (514)
Q Consensus 456 l~~-~~~~t~e~id~~~~~l~~~l~~ 480 (514)
+++ +..++++++++++++|++++++
T Consensus 374 ls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 374 FSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp EEEEEC--------------------
T ss_pred EEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 999 8888999999999999988653
No 129
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.95 E-value=1.7e-26 Score=237.57 Aligned_cols=216 Identities=15% Similarity=0.099 Sum_probs=160.0
Q ss_pred CCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC
Q psy16848 257 VKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN 333 (514)
Q Consensus 257 ~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~ 333 (514)
+++++++++++++||||.+++ +++|.++|++||+++|+||+|+....+....+. .....+.+++++||||. +.
T Consensus 178 ~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~---~~~~~~~~i~~~s~sK~-~~ 253 (417)
T 3g7q_A 178 GEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEA---RPLWNPNIILCMSLSKL-GL 253 (417)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCC---CCCCCTTEEEEEESGGG-TC
T ss_pred ccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcccccccccccc---ccCCCCCEEEEEechhc-cC
Confidence 456899999999999999999 899999999999999999999843321111111 11123678999999994 55
Q ss_pred CC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhh-hchHHH-HHHHHHHHHHHHHHHHHhC----CC
Q psy16848 334 IG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS-SQEGVE-LRAKHQDIVAYLRNELIQI----GF 404 (514)
Q Consensus 334 ~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~-~~~~~~~~~~~l~~~L~~~----g~ 404 (514)
+| ||+++++++++.+......+ +.+.++..+.++.+.++... .....+ ++++++++++.+.+.|.+. ++
T Consensus 254 ~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 331 (417)
T 3g7q_A 254 PGSRCGIIIANDKTITAIANMNGII--SLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERC 331 (417)
T ss_dssp TTSCCEEEECCHHHHHHHHHHHHHH--CCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTC
T ss_pred CCcceEEEEeCHHHHHHHHHhhcce--eeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 56 99999999999888766554 33567777777777776321 111222 5667788888888888763 46
Q ss_pred ccccCC-CcEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCC------CcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848 405 PVEHTP-SHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVG------EEKIRLAPTPFHTREMIDKFVTDLLA 476 (514)
Q Consensus 405 ~~~~~~-~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~------~~~iRl~~~~~~t~e~id~~~~~l~~ 476 (514)
.+..+. +.++++.++. ..+..++.+.|. ++||.+.++..|..... .+++|++++. +++++++++++|++
T Consensus 332 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~ 408 (417)
T 3g7q_A 332 LIHKPEGAIFLWLWFKDLPITTELLYQRLK-ARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP--EPDKIEAGVKILAE 408 (417)
T ss_dssp EEECCCBSSEEEEECTTCSSCHHHHHHHHH-HTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS--CHHHHHHHHHHHHH
T ss_pred eeeCCCcceEEEEEcCCCCCCHHHHHHHHH-HCCEEEECchhhCCCCccccccCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 655454 4577788876 456888999994 99999999886543221 5799999984 89999999999999
Q ss_pred HHHHc
Q psy16848 477 VWKSL 481 (514)
Q Consensus 477 ~l~~~ 481 (514)
+++++
T Consensus 409 ~l~~~ 413 (417)
T 3g7q_A 409 EIERA 413 (417)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 130
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.95 E-value=2e-27 Score=248.41 Aligned_cols=362 Identities=17% Similarity=0.181 Sum_probs=230.8
Q ss_pred cCCceeeecccCCC---CC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc--CCCcEEEEeccccc
Q psy16848 15 KSNRVTCRLSSVQY---KV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH--QKEAGLVFTSCYVA 87 (514)
Q Consensus 15 ~~g~~~~d~~~~~~---~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~--~~~~~i~~~sGt~a 87 (514)
.+|+.|+||.++.+ ++ ||++.+++.+++...+...+.........++.+++++++++++ +.++++|++||++|
T Consensus 60 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGseA 139 (472)
T 1ohv_A 60 VDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCS 139 (472)
T ss_dssp TTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHH
T ss_pred CCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchhH
Confidence 36788888865443 44 8999999999875432111111111123567777777777776 56788999999999
Q ss_pred cccchhhcccc------C-----------------CC---c-eEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHH
Q psy16848 88 NDSTLFTLGKM------I-----------------PG---L-HYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVL 140 (514)
Q Consensus 88 ~~~~l~~l~~~------~-----------------~g---d-~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l 140 (514)
++.+++.+... + || + .|..+..+|.....+++..+.....
T Consensus 140 ~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~------------- 206 (472)
T 1ohv_A 140 NENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIH------------- 206 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHH-------------
T ss_pred HHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCcccc-------------
Confidence 99999876310 0 24 4 4555667777777777776643210
Q ss_pred HhcccCCCc--EEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848 141 ENMDVKIPK--LVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP 218 (514)
Q Consensus 141 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~ 218 (514)
........ .+.+. .| ..|.... + .++.
T Consensus 207 -~~~~~~~~~~~~~~p-~~-----~~~~~~~--~--~~~~---------------------------------------- 235 (472)
T 1ohv_A 207 -KIDIPSFDWPIAPFP-RL-----KYPLEEF--V--KENQ---------------------------------------- 235 (472)
T ss_dssp -HTTSCCCCCCEECCC-CC-----CSSGGGC--H--HHHH----------------------------------------
T ss_pred -ccCCCCCCCcccCCC-cc-----cCccccc--c--ccch----------------------------------------
Confidence 00000000 00000 00 0000000 0 0000
Q ss_pred ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccC--CCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEE
Q psy16848 219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV--KIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALT 292 (514)
Q Consensus 219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~--~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~l 292 (514)
.....|.+.+++.+++... .++++|++++++|++|.+.+ +++|+++|++||+++
T Consensus 236 --------------------~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~ll 295 (472)
T 1ohv_A 236 --------------------QEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAF 295 (472)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEE
T ss_pred --------------------hHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 0000145666777765321 26899999999999998877 999999999999999
Q ss_pred EEecccc-ccccCCCCCCccccCCCccCceEEEcCCcccc-cCCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHH
Q psy16848 293 FVDEVHA-VGLYGEHGAGIGERDGQLHNMDIISGTLGKAF-GNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAR 370 (514)
Q Consensus 293 i~Dea~~-~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l-g~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~ 370 (514)
|+||+|+ +|..|... ..+..+....+|++ ||||++ + ||+++ ++++. .+...... .+.+.+++.++++.
T Consensus 296 i~DEv~~g~g~~g~~~--~~~~~gv~~~~Di~--t~sK~~l~--GG~~~-~~~~~-~~~~~~~~--~T~~~~~~~~aaa~ 365 (472)
T 1ohv_A 296 LVDEVQTGGGSTGKFW--AHEHWGLDDPADVM--TFSKKMMT--GGFFH-KEEFR-PNAPYRIF--NTWLGDPSKNLLLA 365 (472)
T ss_dssp EEECTTTTTTTTSSSS--GGGGGCCSSCCSEE--EECGGGSS--EEEEE-CGGGS-CSSSSSSC--CSSSSCHHHHHHHH
T ss_pred EEeCcccCCCCCCCch--hccccCCCCCCCEE--EEcccccc--CCccC-chhhc-cccccccc--CccCccHHHHHHHH
Confidence 9999998 55443211 11222321127888 889995 4 57776 65542 11111111 23467899999999
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC--CCc----cccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccC
Q psy16848 371 EAIRILSSQEGVELRAKHQDIVAYLRNELIQI--GFP----VEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINY 444 (514)
Q Consensus 371 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~----~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~ 444 (514)
++|+.+.++. +.++++++++++.+.|+++ +++ ...+.+.++.+.+++.....++++.|+ ++||.+.++
T Consensus 366 aal~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~-- 439 (472)
T 1ohv_A 366 EVINIIKRED---LLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDESIRNKLISIAR-NKGVMLGGC-- 439 (472)
T ss_dssp HHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEEECSSHHHHHHHHHHHH-HTTEECEEE--
T ss_pred HHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCceEEEEEeCChhHHHHHHHHHH-HCCeEEecC--
Confidence 9999875544 6788888888888888765 233 234557788888765445678999997 899999863
Q ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 445 PTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 445 ~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
+.+++|++++..+|++|+++++++|+++++++
T Consensus 440 -----g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 440 -----GDKSIRFRPTLVFRDHHAHLFLNIFSDILADF 471 (472)
T ss_dssp -----TTTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred -----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 24689999999999999999999999988764
No 131
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.95 E-value=7.3e-27 Score=239.06 Aligned_cols=321 Identities=17% Similarity=0.160 Sum_probs=216.2
Q ss_pred CCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEe
Q psy16848 27 QYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYIS 106 (514)
Q Consensus 27 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~ 106 (514)
+|..++.+.+++.+++..+....+...+..+..+..+++++++++++|.++.++++||++|+..++.++.. +||+|++
T Consensus 31 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~~--~gd~vi~ 108 (398)
T 2rfv_A 31 IFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQ--QGDHIVS 108 (398)
T ss_dssp CCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEE
T ss_pred CcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEE
Confidence 34444445555555554322222222222334678899999999999998899999999999999988866 9999999
Q ss_pred cCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccc
Q psy16848 107 DAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH 186 (514)
Q Consensus 107 ~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (514)
+.+.|.++...++.
T Consensus 109 ~~~~~~~~~~~~~~------------------------------------------------------------------ 122 (398)
T 2rfv_A 109 ASAIYGCTHAFLSH------------------------------------------------------------------ 122 (398)
T ss_dssp ESSSCHHHHHHHHT------------------------------------------------------------------
T ss_pred cCCCcccHHHHHHH------------------------------------------------------------------
Confidence 99999988755410
Q ss_pred cccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEe
Q psy16848 187 AVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFE 266 (514)
Q Consensus 187 ~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~ 266 (514)
.+...|.+++.++..|.+.+++.++ +++++|+++
T Consensus 123 ------------------------------------------~~~~~g~~~~~v~~~d~~~l~~~i~----~~~~~v~~~ 156 (398)
T 2rfv_A 123 ------------------------------------------SMPKFGINVRFVDAAKPEEIRAAMR----PETKVVYIE 156 (398)
T ss_dssp ------------------------------------------HHHHTTCEEEEECTTSHHHHHHHCC----TTEEEEEEE
T ss_pred ------------------------------------------HHHHcCCEEEEeCCCCHHHHHHhcC----CCCeEEEEE
Confidence 0112244444555445555555443 358999999
Q ss_pred cCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEecH
Q psy16848 267 TVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVGTK 342 (514)
Q Consensus 267 ~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~~~ 342 (514)
+++||+|.++|+++|.++|++||+++|+||+|+.+..+. .. ..++|+++.|+||+++++ ||++++++
T Consensus 157 ~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~-------~~--~~~~di~~~s~sK~~~~~g~~~~G~~~~~~ 227 (398)
T 2rfv_A 157 TPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQ-------PL--QLGADIVVHSVTKYINGHGDVIGGIIVGKQ 227 (398)
T ss_dssp SSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC-------GG--GGTCSEEEEETTTTTTCSSCCCCEEEEECH
T ss_pred CCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCC-------ch--hhCCcEEEEeCcccccCCCCceEEEEEECH
Confidence 999999999999999999999999999999999665421 11 236899999999999653 49999998
Q ss_pred HHHH-HHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC---------------Ccc
Q psy16848 343 NFID-TIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIG---------------FPV 406 (514)
Q Consensus 343 ~~~~-~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------------~~~ 406 (514)
++++ .+......+ .+.+.++..++++.++++.. ....++..++.+.+.+.|++.+ +.+
T Consensus 228 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~ 301 (398)
T 2rfv_A 228 EFIDQARFVGLKDI-TGGCMSPFNAWLTLRGVKTL-----GIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYEL 301 (398)
T ss_dssp HHHHHHHHTHHHHT-TCCCCCHHHHHHHHHHHTTH-----HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHH
T ss_pred HHHHHHHHHHHHhC-CCCCCCHHHHHHHHhhhhhH-----HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHH
Confidence 8876 555433221 02356788888888777643 2344556666777777776642 111
Q ss_pred cc----CCCcEEEEEeCCC-ccHHHHHHHHHHhCCeEEecccCCC------C--------------CCCCcEEEEEeCCC
Q psy16848 407 EH----TPSHIIPIKIGNP-ALNTKICDMLLKEKGHYVQPINYPT------V--------------PVGEEKIRLAPTPF 461 (514)
Q Consensus 407 ~~----~~~~~~~i~l~~~-~~~~~~~~~Ll~~~GI~v~~~~~~~------~--------------~~~~~~iRl~~~~~ 461 (514)
.. ..++++.+.+++. .....+.+.+ ...|+.+++|..+. . ...++.+|++++..
T Consensus 302 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~-~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~ 380 (398)
T 2rfv_A 302 GQRQMSLPGGIISFEIAGGLEAGRRMINSV-ELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLE 380 (398)
T ss_dssp HHHHCSSCCSEEEEEETTHHHHHHHHHTTC-SSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSS
T ss_pred HHhhCCCCceEEEEEEcCCHHHHHHHHHhC-CcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCC
Confidence 11 2467888888742 2233444444 24577776664311 0 01268999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy16848 462 HTREMIDKFVTDLLAV 477 (514)
Q Consensus 462 ~t~e~id~~~~~l~~~ 477 (514)
++++++++++++|+++
T Consensus 381 ~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 381 DPEDIINDLEHAIRKA 396 (398)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999888753
No 132
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.95 E-value=1.1e-26 Score=240.23 Aligned_cols=345 Identities=18% Similarity=0.113 Sum_probs=239.9
Q ss_pred cCCceeeecccCCC---CC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-CCCcEEEEecccccc
Q psy16848 15 KSNRVTCRLSSVQY---KV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-QKEAGLVFTSCYVAN 88 (514)
Q Consensus 15 ~~g~~~~d~~~~~~---~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~i~~~sGt~a~ 88 (514)
.+|+.|+||.++.+ ++ ||++.+++.+++.+... . +...+...++++++++++ +.++++|++||++|+
T Consensus 50 ~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~-~------~~~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~ 122 (429)
T 3k28_A 50 IDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTS-F------GAPTEIENKLAKLVIERVPSIEIVRMVNSGTEAT 122 (429)
T ss_dssp TTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSC-C------SSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHH
T ss_pred CCCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcC-c------CCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHH
Confidence 37888999976543 44 79999999999987321 1 123477889999999998 567788899999999
Q ss_pred ccchhhccccCCCceEEe-cCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848 89 DSTLFTLGKMIPGLHYIS-DAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK 167 (514)
Q Consensus 89 ~~~l~~l~~~~~gd~v~~-~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
..++..+....+++.|++ ++.+|.....++...+.....+....
T Consensus 123 ~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~----------------------------------- 167 (429)
T 3k28_A 123 MSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPD----------------------------------- 167 (429)
T ss_dssp HHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CC-----------------------------------
T ss_pred HHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCC-----------------------------------
Confidence 999977643224555555 56666666655555444322111000
Q ss_pred HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848 168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH 247 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~ 247 (514)
..+ .....+..++.++.+|.+.
T Consensus 168 ---------------------------~~~-------------------------------~~~~~~~~~~~~~~~d~~~ 189 (429)
T 3k28_A 168 ---------------------------SPG-------------------------------VPEGVAKNTITVAYNDLES 189 (429)
T ss_dssp ---------------------------CTT-------------------------------CCHHHHTTEEEEETTCHHH
T ss_pred ---------------------------cCC-------------------------------CCCcccCceeecCCCCHHH
Confidence 000 0000123566777889999
Q ss_pred HHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEE
Q psy16848 248 LTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDII 323 (514)
Q Consensus 248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~ 323 (514)
+++.+++.. +++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+....|.. ...+..+. .+|++
T Consensus 190 le~~l~~~~-~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~--~~~~~~~~--~~di~ 264 (429)
T 3k28_A 190 VKYAFEQFG-DDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYN--CGQGYYGV--TPDLT 264 (429)
T ss_dssp HHHHHHHHG-GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSSTT--HHHHHHTC--CCSEE
T ss_pred HHHHHHhCC-CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccCcc--hHHHHhCC--CCcee
Confidence 999887642 35789999999999999988 99999999999999999999972122211 11222333 57887
Q ss_pred EcCCcccccCCC---eEEEecHHHHHHHHhhcCc-eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q psy16848 324 SGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAG-FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNEL 399 (514)
Q Consensus 324 ~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 399 (514)
||||++++ | |++++++++++.+...... ...+++.+++.++++.++++... ++..++++++++++.+.|
T Consensus 265 --t~sK~~~~-G~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~----~~~~~~~~~~~~~l~~~L 337 (429)
T 3k28_A 265 --CLGKVIGG-GLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT----PESYVEFERKAEMLEAGL 337 (429)
T ss_dssp --EECGGGGT-TSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC----HHHHHHHHHHHHHHHHHH
T ss_pred --hhhhhhcC-CCCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 89999976 5 9999999988877543221 12245789999999999998653 457888888888888888
Q ss_pred HhC----CC-ccccCCCcEEEEEeCCC-------------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCC
Q psy16848 400 IQI----GF-PVEHTPSHIIPIKIGNP-------------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF 461 (514)
Q Consensus 400 ~~~----g~-~~~~~~~~~~~i~l~~~-------------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~ 461 (514)
++. +. ....+.+.++.+.+... ....++++.|+ ++||.+.++. ...+|+++ .
T Consensus 338 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~-------~~~~r~~~--~ 407 (429)
T 3k28_A 338 RKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMV-EQGVFLPPSQ-------FEGLFLST--V 407 (429)
T ss_dssp HHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-HTTEECCSST-------TSCBCCCT--T
T ss_pred HHHHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHH-HCCeEEecCC-------CCCEEEEC--C
Confidence 764 22 22345677877776421 12467888886 8999997642 23567754 5
Q ss_pred CCHHHHHHHHHHHHHHHHHc
Q psy16848 462 HTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 462 ~t~e~id~~~~~l~~~l~~~ 481 (514)
+|++++++++++|+++++++
T Consensus 408 ~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 408 HSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp CCHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998875
No 133
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.95 E-value=6.6e-27 Score=235.06 Aligned_cols=330 Identities=12% Similarity=0.074 Sum_probs=226.2
Q ss_pred ceeeecccCCCC-CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCc-EEEEeccccccccchhhc
Q psy16848 18 RVTCRLSSVQYK-VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEA-GLVFTSCYVANDSTLFTL 95 (514)
Q Consensus 18 ~~~~d~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~i~~~sGt~a~~~~l~~l 95 (514)
..++||.++.+. .+|++.+++.+++. + +...++..+..+++++++++++|.+. .++++|||+|+..++.++
T Consensus 7 ~~~id~~~~~~~~~~~~v~~a~~~~~~--~-----~~~~~~~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~ 79 (356)
T 1v72_A 7 PPALGFSSDNIAGASPEVAQALVKHSS--G-----QAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAM 79 (356)
T ss_dssp CCCCBCSCGGGCCCCHHHHHHHHHTTS--S-----CCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTS
T ss_pred CceEeeccCCccCCCHHHHHHHHhhcc--C-----cccccccchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHh
Confidence 457899776555 37899988888642 1 11234456788999999999999655 477788999999999888
Q ss_pred cccCCCceEEecCccchhhhhh--hhcC--CCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848 96 GKMIPGLHYISDAGNHASMIQG--IRNS--SAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE 171 (514)
Q Consensus 96 ~~~~~gd~v~~~~~~h~~~~~~--~~~~--~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
.. +||.|+++.++|.+.... ++.. |.+++.++.++ .
T Consensus 80 ~~--~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~------------------------------------- 119 (356)
T 1v72_A 80 TP--PWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPA-A------------------------------------- 119 (356)
T ss_dssp CC--TTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGG-G-------------------------------------
T ss_pred cC--CCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCCC-C-------------------------------------
Confidence 65 999999999999998766 6665 66666544310 0
Q ss_pred hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH-
Q psy16848 172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ- 250 (514)
Q Consensus 172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~- 250 (514)
.-|.+.+++
T Consensus 120 ----------------------------------------------------------------------~~d~~~l~~~ 129 (356)
T 1v72_A 120 ----------------------------------------------------------------------KLDIVRLRER 129 (356)
T ss_dssp ----------------------------------------------------------------------CCCHHHHHHH
T ss_pred ----------------------------------------------------------------------eEcHHHHHHH
Confidence 013444444
Q ss_pred HHhhc---cCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEE
Q psy16848 251 VLENM---DVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS 324 (514)
Q Consensus 251 ~l~~~---~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~ 324 (514)
.+++. ..+++++|++++++| +|.+++ +++|.++|++||+++|+|++|..+.....+... ...++....|+++
T Consensus 130 ~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~-~~~~~~~~~d~~~ 207 (356)
T 1v72_A 130 TREKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSP-AEMTWKAGVDALS 207 (356)
T ss_dssp TTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCT-TTTTGGGTCCEEE
T ss_pred hhhcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCH-HHhhhhhcCCEEE
Confidence 44321 112578999999876 999777 799999999999999999999843211111011 1111113578888
Q ss_pred cCCcccccCCC-eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-
Q psy16848 325 GTLGKAFGNIG-GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI- 402 (514)
Q Consensus 325 ~S~sK~lg~~G-G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 402 (514)
.|+||+.++.| |++++++++++.+.......+ ..... ...++...++.+.+....+..++.+++++++.+.|+++
T Consensus 208 ~s~sK~g~~~G~g~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~ 284 (356)
T 1v72_A 208 FGATKNGVLAAEAIVLFNTSLATEMSYRRKRAG-HLSSK--MRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLG 284 (356)
T ss_dssp ECCGGGTCSSCEEEEESSGGGHHHHHHHHHHTT-CCCSS--THHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred EecccCCCcCccEEEEECHHHHhhHHHHhhccC-chhhh--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCC
Confidence 89999944445 688889888887764422110 11111 12233334555544334557778889999999999886
Q ss_pred CCcccc-CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848 403 GFPVEH-TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS 480 (514)
Q Consensus 403 g~~~~~-~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~ 480 (514)
|+.+.. +.++++++.++ .++.+.|. ++||.+.++.+ . .+++|++++..++++++++++++|++++++
T Consensus 285 g~~~~~~~~~~~~~~~~~-----~~~~~~l~-~~gi~v~~g~~-~----~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~ 352 (356)
T 1v72_A 285 GVEVLGGTEANILFCRLD-----SAMIDALL-KAGFGFYHDRW-G----PNVVRFVTSFATTAEDVDHLLNQVRLAADR 352 (356)
T ss_dssp TEEEESCCCSSEEEEEEC-----HHHHHHHH-HTTCBCBCSSS-S----TTEEEEECCTTCCHHHHHHHHHHHHHTC--
T ss_pred CcEEccCCCccEEEEEcC-----HHHHHHHH-hcCeEEecccc-C----CCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 777643 34567777764 37888885 89999987663 1 579999999889999999999999987654
No 134
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.95 E-value=2.9e-26 Score=236.76 Aligned_cols=345 Identities=19% Similarity=0.154 Sum_probs=234.6
Q ss_pred cCCceeeecccCC---CCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC-CCcEEEEecccccc
Q psy16848 15 KSNRVTCRLSSVQ---YKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ-KEAGLVFTSCYVAN 88 (514)
Q Consensus 15 ~~g~~~~d~~~~~---~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~i~~~sGt~a~ 88 (514)
.+|+.++||.++. .++ ||++.+++.+++++... ++ ...+...+++++++++++ .+++++++||++|+
T Consensus 49 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~------~~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~ 121 (427)
T 3fq8_A 49 VDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTS-FG------APCALENVLAEMVNDAVPSIEMVRFVNSGTEAC 121 (427)
T ss_dssp TTSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSC-CS------SCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHH
T ss_pred CCCCEEEECCCchhhhccCCCCHHHHHHHHHHHHhCCC-cC------CCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHH
Confidence 3778899997653 344 79999999999986321 11 145788999999999984 66788889999999
Q ss_pred ccchhhccc-cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848 89 DSTLFTLGK-MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK 167 (514)
Q Consensus 89 ~~~l~~l~~-~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
..++..... .++++.|+.++.+|.....+....+.....+.. |.
T Consensus 122 ~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~-----------------~~------------------ 166 (427)
T 3fq8_A 122 MAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGL-----------------PS------------------ 166 (427)
T ss_dssp HHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTC-----------------CS------------------
T ss_pred HHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCC-----------------CC------------------
Confidence 999854321 224445555666666555444333322111000 00
Q ss_pred HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848 168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH 247 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~ 247 (514)
..| .....+..+..++.+|++.
T Consensus 167 ---------------------------~~~-------------------------------~~~~~~~~~~~~~~~d~~~ 188 (427)
T 3fq8_A 167 ---------------------------SPG-------------------------------VPKKTTANTLTTPYNDLEA 188 (427)
T ss_dssp ---------------------------CSS-------------------------------SCHHHHTTEEEEETTCHHH
T ss_pred ---------------------------CCC-------------------------------CCCcccCceeecCCCCHHH
Confidence 000 0000123466777789999
Q ss_pred HHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEE
Q psy16848 248 LTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDII 323 (514)
Q Consensus 248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~ 323 (514)
+++.+++.. +++++|++++++|++|.+.+ +++|.++|++||++||+||+|+....|.. ...+..+. .+|+.
T Consensus 189 le~~l~~~~-~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~--~~~~~~~~--~~di~ 263 (427)
T 3fq8_A 189 VKALFAENP-GEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYG--GVQEKFGV--TPDLT 263 (427)
T ss_dssp HHHHHHHST-TTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTT--HHHHHTTC--CCSEE
T ss_pred HHHHHHhCC-CCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCcc--hhhHhcCC--CCChh
Confidence 999987643 45899999999999999999 99999999999999999999981122211 11223333 57877
Q ss_pred EcCCcccccCCC---eEEEecHHHHHHHHhhcCc-eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q psy16848 324 SGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAG-FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNEL 399 (514)
Q Consensus 324 ~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 399 (514)
|+||++++ | |++++++++++.+...... ...+.+.+++.++++.++++.+.++. +.++++++.+++.+.|
T Consensus 264 --t~sK~~~~-G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~---~~~~~~~~~~~~~~~l 337 (427)
T 3fq8_A 264 --TLGKIIGG-GLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPG---TYEYLDQITKRLSDGL 337 (427)
T ss_dssp --EECGGGGT-TSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTT---HHHHHHHHHHHHHHHH
T ss_pred --hhhhhhhC-CcceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHH
Confidence 88899985 5 9999999998877653211 11244679999999999999775443 5666777777777766
Q ss_pred HhC----CCcc-ccCCCcEEEEEeCCCc-------------cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCC
Q psy16848 400 IQI----GFPV-EHTPSHIIPIKIGNPA-------------LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF 461 (514)
Q Consensus 400 ~~~----g~~~-~~~~~~~~~i~l~~~~-------------~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~ 461 (514)
++. ++.. ....+.++++.+.... ...++.+.|+ ++||.+.++.. . |+.++..
T Consensus 338 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~Gi~v~~~~~-------~--r~~~~~~ 407 (427)
T 3fq8_A 338 LAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGML-EQGIYLAPSQF-------E--AGFTSLA 407 (427)
T ss_dssp HHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHH-HTTEECCSSTT-------S--CEECCTT
T ss_pred HHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHH-HCCcEEecCCC-------C--CEEeeCc
Confidence 653 3322 2335668888775321 1357888886 89999986542 1 4556677
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy16848 462 HTREMIDKFVTDLLAVWKS 480 (514)
Q Consensus 462 ~t~e~id~~~~~l~~~l~~ 480 (514)
+|++++++++++|++++++
T Consensus 408 ~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 408 HTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 8999999999999998875
No 135
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.95 E-value=3.6e-26 Score=236.23 Aligned_cols=346 Identities=16% Similarity=0.129 Sum_probs=229.0
Q ss_pred cCCceeeecccCCC---CC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-CCCcEEEEecccccc
Q psy16848 15 KSNRVTCRLSSVQY---KV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-QKEAGLVFTSCYVAN 88 (514)
Q Consensus 15 ~~g~~~~d~~~~~~---~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~i~~~sGt~a~ 88 (514)
.+|+.|+||.++.+ ++ ||++.+++.+++++.. .+ ....+...++++++++++ +.++++|++|||+|+
T Consensus 50 ~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~-~~------~~~~~~~~~la~~l~~~~~~~~~v~~~~sGsea~ 122 (429)
T 4e77_A 50 VDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGL-SF------GAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEAT 122 (429)
T ss_dssp TTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCS-CC------SSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHH
T ss_pred CCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCc-cc------CCCCHHHHHHHHHHHhhCCCCCEEEEeCcHHHHH
Confidence 37788899976543 33 7999999999998732 11 123477889999999998 567788899999999
Q ss_pred ccchhhccc-cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848 89 DSTLFTLGK-MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK 167 (514)
Q Consensus 89 ~~~l~~l~~-~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
..++..+.. .++++.|+.+..+|......+...+.....+.. |.
T Consensus 123 ~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~-----------------~~------------------ 167 (429)
T 4e77_A 123 MSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQ-----------------PN------------------ 167 (429)
T ss_dssp HHHHHHHHHHHCCCEEEEETTCCCC-----------------------------------CC------------------
T ss_pred HHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCC-----------------CC------------------
Confidence 999875432 224455555666666655443322221110000 00
Q ss_pred HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848 168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH 247 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~ 247 (514)
..+ ........+..++.+|.+.
T Consensus 168 ---------------------------~~~-------------------------------~~~~~~~~~~~~~~~d~~~ 189 (429)
T 4e77_A 168 ---------------------------SPG-------------------------------VPTDFAKHTLTCTYNDLAS 189 (429)
T ss_dssp ---------------------------CTT-------------------------------SCGGGGTTEEEECTTCHHH
T ss_pred ---------------------------cCC-------------------------------CCCccCCceeecCCCCHHH
Confidence 000 0001123466777889999
Q ss_pred HHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEE
Q psy16848 248 LTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDII 323 (514)
Q Consensus 248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~ 323 (514)
+++.+++.. +++++|+++++++++|.+.+ +++|.++|++||++||+||+|+....|.. ...+..+. .+|++
T Consensus 190 le~~l~~~~-~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~~--~~~~~~~~--~pdi~ 264 (429)
T 4e77_A 190 VRQAFEQYP-QEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVALA--GAQDYYHV--IPDLT 264 (429)
T ss_dssp HHHHHHHST-TTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBTT--CHHHHTTC--CCSEE
T ss_pred HHHHHHhcC-CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCcc--hHHHhcCC--CCCee
Confidence 999987642 45788999998888898888 99999999999999999999992133321 12233333 67887
Q ss_pred EcCCcccccC--CCeEEEecHHHHHHHHhhcCc-eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q psy16848 324 SGTLGKAFGN--IGGYIVGTKNFIDTIRSYAAG-FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI 400 (514)
Q Consensus 324 ~~S~sK~lg~--~GG~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 400 (514)
|+||.+++ +.|++++++++++.+...... ...+.+.+++.++++.++++.+.++. ..++++++.+++++.|+
T Consensus 265 --t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~l~~~L~ 339 (429)
T 4e77_A 265 --CLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVG---VYETLTELTDSLATGLR 339 (429)
T ss_dssp --EEEGGGGTTSCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTT---HHHHHHHHHHHHHHHHH
T ss_pred --eecccccCCCCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHH
Confidence 89999985 229999999998877653211 12244789999999999999875433 56666666666666665
Q ss_pred hC----CCcc-ccCCCcEEEEEeCCC--------------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCC
Q psy16848 401 QI----GFPV-EHTPSHIIPIKIGNP--------------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF 461 (514)
Q Consensus 401 ~~----g~~~-~~~~~~~~~i~l~~~--------------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~ 461 (514)
+. ++.. ..+.+.++.+.+++. ....++.+.|+ ++||.+.++.. ..+|+ +..
T Consensus 340 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~~-------~~~~~--~~~ 409 (429)
T 4e77_A 340 HAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLML-EEGVYLAPSAF-------EAGFM--SLA 409 (429)
T ss_dssp HHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHH-HTTEECCSSTT-------SCEEC--CTT
T ss_pred HHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHH-HCCeEEeecCC-------CCEEE--ecc
Confidence 53 4332 234567888887653 12367888896 88999986532 23454 456
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy16848 462 HTREMIDKFVTDLLAVWKS 480 (514)
Q Consensus 462 ~t~e~id~~~~~l~~~l~~ 480 (514)
+|++++++++++|++++++
T Consensus 410 ~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 410 HSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp CCHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 8999999999999998764
No 136
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.95 E-value=5.3e-26 Score=232.99 Aligned_cols=317 Identities=16% Similarity=0.135 Sum_probs=218.8
Q ss_pred cCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceE
Q psy16848 25 SVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHY 104 (514)
Q Consensus 25 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v 104 (514)
..+|...+.+.+++.+.++.+....+...+.....+..+++++++++++|.+++++++||++|+..++.++.. +||.|
T Consensus 27 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~l~~~ia~~~g~~~~i~~~~g~~ai~~~~~~l~~--~gd~V 104 (404)
T 1e5e_A 27 PPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTILK--AGDHL 104 (404)
T ss_dssp CCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEE
T ss_pred CCCcCCCccccCCHHHHHHhhcCCcCCccccCCcChHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHHhC--CCCEE
Confidence 3455556666666666665443222222222223466789999999999999899999999999999988866 99999
Q ss_pred EecCccchhhhh----hhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceE
Q psy16848 105 ISDAGNHASMIQ----GIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALT 180 (514)
Q Consensus 105 ~~~~~~h~~~~~----~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (514)
+++.+.|.+... .++..
T Consensus 105 l~~~~~y~~~~~~~~~~~~~~----------------------------------------------------------- 125 (404)
T 1e5e_A 105 ISDECLYGCTHALFEHALTKF----------------------------------------------------------- 125 (404)
T ss_dssp EEESCCCHHHHHHHHTHHHHT-----------------------------------------------------------
T ss_pred EEeCCCchhHHHHHHHHHHHc-----------------------------------------------------------
Confidence 999999998775 33333
Q ss_pred EeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCc
Q psy16848 181 FVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP 260 (514)
Q Consensus 181 ~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~ 260 (514)
|++++.++.+|.+.+++.++ +++
T Consensus 126 -----------------------------------------------------g~~~~~v~~~d~~~l~~~i~----~~t 148 (404)
T 1e5e_A 126 -----------------------------------------------------GIQVDFINTAIPGEVKKHMK----PNT 148 (404)
T ss_dssp -----------------------------------------------------TCEEEEECTTSTTHHHHHCC----TTE
T ss_pred -----------------------------------------------------CCEEEEECCCCHHHHHHhcC----CCC
Confidence 44455555445555555553 358
Q ss_pred eEEEEecCCCCCccccCHHHHHHHHHH-cCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCC----C
Q psy16848 261 KLVAFETVHSMTGAICPLKELCEVSHQ-HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----G 335 (514)
Q Consensus 261 ~~vv~~~~~nptG~~~~l~~l~~l~~~-~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----G 335 (514)
++|++++|+||+|.++++++|.++|++ +|+++|+|++|+.+.... +. ..++|+++.|+||+++++ |
T Consensus 149 ~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~~------~~---~~~~di~~~S~sK~~~~~g~ri~ 219 (404)
T 1e5e_A 149 KIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITN------PV---DFGVDVVVHSATKYINGHTDVVA 219 (404)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCC------GG---GGTCSEEEEETTTTTTCSSCCCC
T ss_pred cEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhCC------cc---ccCCEEEEEcCccccCCCCCCeE
Confidence 999999999999999999999999999 999999999999654321 11 236899999999999764 4
Q ss_pred eEEEecHHHHH-HHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC-C---------
Q psy16848 336 GYIVGTKNFID-TIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIG-F--------- 404 (514)
Q Consensus 336 G~l~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~--------- 404 (514)
|++++++++++ .+......+ ++...++..+.++..+++.. +...++..++.+.+.+.|++.. +
T Consensus 220 G~~~~~~~~~~~~l~~~~~~~-~g~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~ 293 (404)
T 1e5e_A 220 GLICGKADLLQQIRMVGIKDI-TGSVISPHDAWLITRGLSTL-----NIRMKAESENAMKVAEYLKSHPAVEKVYYPGFE 293 (404)
T ss_dssp EEEEECHHHHHHHHHTCCCCC-CCCCCCHHHHHHHHHHHTTH-----HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCS
T ss_pred EEEEECHHHHHHHHHHHHHhC-CCCCCCHHHHHHHHHhHhHH-----HHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCC
Confidence 99999999888 777655433 12356777777777777532 2345555666666777776542 1
Q ss_pred -----cccc----CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccC---------CCCC------------CC--Cc
Q psy16848 405 -----PVEH----TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINY---------PTVP------------VG--EE 452 (514)
Q Consensus 405 -----~~~~----~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~---------~~~~------------~~--~~ 452 (514)
.+.. ..++++.+.+++. ..+..+ ++++.||.+...++ |..+ .+ ++
T Consensus 294 ~~p~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~-~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~ 370 (404)
T 1e5e_A 294 DHEGHDIAKKQMRMYGSMITFILKSG--FEGAKK-LLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDG 370 (404)
T ss_dssp SSTTHHHHHHHCSSCCSEEEEEETTH--HHHHHH-HHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTT
T ss_pred CCccHHHHHhhCCCCceEEEEEeCCC--HHHHHH-HHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCC
Confidence 1111 1377888887642 233444 44688985443211 1100 12 57
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 453 KIRLAPTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 453 ~iRl~~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
++|++++. |+++++++.|+++++.+
T Consensus 371 ~iRis~g~----e~~~~li~~l~~al~~~ 395 (404)
T 1e5e_A 371 MIRLSVGI----EDADELIADFKQGLDAL 395 (404)
T ss_dssp EEEEECCS----SCHHHHHHHHHHHHHHH
T ss_pred eEEEEeCC----CCHHHHHHHHHHHHHHH
Confidence 99999994 88999999998887653
No 137
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.95 E-value=2.2e-26 Score=237.55 Aligned_cols=341 Identities=21% Similarity=0.201 Sum_probs=230.6
Q ss_pred cCCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-CCCcEEEEecccccc
Q psy16848 15 KSNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-QKEAGLVFTSCYVAN 88 (514)
Q Consensus 15 ~~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~i~~~sGt~a~ 88 (514)
.+|+.++||.++ .+++ ||++.+++.+++++ +..+ .+..+...++++++++++ +.+++++++||++|+
T Consensus 49 ~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~~~------~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~ 121 (424)
T 2e7u_A 49 ADGNRYLDYVMSWGPLILGHAHPKVLARVRETLER-GLTF------GAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEAT 121 (424)
T ss_dssp TTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHT-CSCC------SSCCHHHHHHHHHHHHHCTTCCEEEEESSHHHHH
T ss_pred CCCCEEEEccccccccccCCCCHHHHHHHHHHHHh-CCCC------CCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHH
Confidence 367888999765 4554 78999999999987 3221 124577899999999999 677788899999999
Q ss_pred ccchhh---ccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccc
Q psy16848 89 DSTLFT---LGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP 165 (514)
Q Consensus 89 ~~~l~~---l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
..++.. +.. +++.|+.++.+|.....++...+.....+.. |.
T Consensus 122 ~~al~~ar~~~~--~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~-----------------p~---------------- 166 (424)
T 2e7u_A 122 MSALRLARGYTG--RPYIVKFRGNYHGHADGLLVEAGSGALTLGV-----------------PS---------------- 166 (424)
T ss_dssp HHHHHHHHHHHC--CCEEEEETTCCCCCCGGGSEECCSSSCCBCE-----------------ES----------------
T ss_pred HHHHHHHHHhhC--CCEEEEECCCcCCCcHHHHHhcCCcccccCC-----------------CC----------------
Confidence 998875 332 5555555555555444344333321110000 00
Q ss_pred hhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCCh
Q psy16848 166 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDV 245 (514)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~ 245 (514)
..|+ ....+.+++.++.+|+
T Consensus 167 -----------------------------~~g~-------------------------------~~~~~~~~~~~~~~d~ 186 (424)
T 2e7u_A 167 -----------------------------SAGV-------------------------------PEEYAKLTLVLEYNDP 186 (424)
T ss_dssp -----------------------------STTC-------------------------------CHHHHTTEEEECTTCH
T ss_pred -----------------------------CCCC-------------------------------CCccCCceEeCCCCCH
Confidence 0000 0000123556666788
Q ss_pred hHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCce
Q psy16848 246 NHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMD 321 (514)
Q Consensus 246 ~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~d 321 (514)
+.+++.+++.. +++++|++++.++++|.+.+ +++|+++ ++||+++|+||+|+....|.. ...+..+. .+|
T Consensus 187 ~~le~~l~~~~-~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g~~--~~~~~~~~--~~d 260 (424)
T 2e7u_A 187 EGLREVLKRRG-EEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLAFG--GATELLGL--KPD 260 (424)
T ss_dssp HHHHHHHHHHG-GGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSSTT--HHHHHHTC--CCS
T ss_pred HHHHHHHHhCC-CCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccchh--HHHHHhCC--Ccc
Confidence 88888887531 34788888888878998887 9999999 999999999999992122221 11122333 578
Q ss_pred EEEcCCcccccC--CCeEEEecHHHHHHHHhhcCc-eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q psy16848 322 IISGTLGKAFGN--IGGYIVGTKNFIDTIRSYAAG-FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNE 398 (514)
Q Consensus 322 i~~~S~sK~lg~--~GG~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 398 (514)
++ ||||++++ +.|++++++++++.+...... ...+.+.+++.++++.++++.+.+ .++..++++++.+++.+.
T Consensus 261 i~--s~sK~l~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~ 336 (424)
T 2e7u_A 261 LV--TLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAG 336 (424)
T ss_dssp EE--EECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHH
T ss_pred hh--hhhhhhhCCcceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHH
Confidence 77 99999986 239999999988877652211 112447889999999999987754 134778888888888888
Q ss_pred HHhC----CCc-cccCCCcEEEEEeCCC-------------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCC
Q psy16848 399 LIQI----GFP-VEHTPSHIIPIKIGNP-------------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTP 460 (514)
Q Consensus 399 L~~~----g~~-~~~~~~~~~~i~l~~~-------------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~ 460 (514)
|+++ ++. ...+.+.++++.+++. ....++.+.|+ ++||.+.++.. ..+|++ .
T Consensus 337 L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~-------~~~~~~--~ 406 (424)
T 2e7u_A 337 LKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLL-DRGIYWPPSNF-------EAAFLS--V 406 (424)
T ss_dssp HHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-TTTEECCSSSS-------SCEECC--T
T ss_pred HHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHH-HCCeEEeccCC-------CceEee--c
Confidence 8764 543 2345677888888641 23567888896 89999986542 235544 5
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy16848 461 FHTREMIDKFVTDLLAV 477 (514)
Q Consensus 461 ~~t~e~id~~~~~l~~~ 477 (514)
.++++++++++++|+++
T Consensus 407 ~~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 407 AHREEDVEKTLEALRKA 423 (424)
T ss_dssp TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 68999999999999875
No 138
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.95 E-value=1.5e-26 Score=241.67 Aligned_cols=325 Identities=17% Similarity=0.152 Sum_probs=229.7
Q ss_pred ChhHHHHHHHHHHHhCCCCC-CcC-cccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccchhhccc-cCCCceEE
Q psy16848 31 PKGGRKCLGEALEKFGTGAG-GTR-NISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFTLGK-MIPGLHYI 105 (514)
Q Consensus 31 ~~~~~~a~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~l~~-~~~gd~v~ 105 (514)
++.+.+++.+++..++.... ++. ...+..+..+++++++++++|.+ ..++++|+|+++..++.++.+ ..++++|+
T Consensus 80 p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl 159 (465)
T 3e9k_A 80 PKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYKIL 159 (465)
T ss_dssp ETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEE
T ss_pred hHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccccCCCCEEE
Confidence 45687888887776542211 111 11133466688999999999865 456566667777778888765 12355699
Q ss_pred ecCccchhhhh----hhhcCCCCeee----c-cCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhc
Q psy16848 106 SDAGNHASMIQ----GIRNSSAPKII----Y-RHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH 176 (514)
Q Consensus 106 ~~~~~h~~~~~----~~~~~~~~~~~----~-~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (514)
++.+.|++... .++..|.++.. + +.+
T Consensus 160 ~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~--------------------------------------------- 194 (465)
T 3e9k_A 160 LEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPRE--------------------------------------------- 194 (465)
T ss_dssp EETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCT---------------------------------------------
T ss_pred EcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCC---------------------------------------------
Confidence 99999998655 34445655421 1 100
Q ss_pred CceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhcc
Q psy16848 177 GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD 256 (514)
Q Consensus 177 ~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~ 256 (514)
+.+ .-|.+.+++.+++.
T Consensus 195 ------------------~~~--------------------------------------------~~d~~~l~~~i~~~- 211 (465)
T 3e9k_A 195 ------------------GEE--------------------------------------------TLRIEDILEVIEKE- 211 (465)
T ss_dssp ------------------TCS--------------------------------------------SCCHHHHHHHHHHH-
T ss_pred ------------------CCC--------------------------------------------ccCHHHHHHHHHhc-
Confidence 000 01556666666543
Q ss_pred CCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc--cCC
Q psy16848 257 VKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF--GNI 334 (514)
Q Consensus 257 ~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l--g~~ 334 (514)
++++++|++++++||||.+.|+++|.++|++||+++|+|++|+.|.. +......++|++++|+||++ |+.
T Consensus 212 ~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~--------~~~~~~~~~D~~~~s~~K~l~~gp~ 283 (465)
T 3e9k_A 212 GDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNV--------ELYLHDWGVDFACWCSYKYLNAGAG 283 (465)
T ss_dssp GGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTS--------CCCHHHHTCCEEEECSSSTTCCCTT
T ss_pred CCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCc--------CCchhhcCCCEEEECcccccccCCC
Confidence 13589999999999999999999999999999999999999996653 11111347899999999999 444
Q ss_pred C-eEEEecHHHHHHHHhhcCceE-------------e----------ccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q psy16848 335 G-GYIVGTKNFIDTIRSYAAGFI-------------F----------TTSLPPTVLAGAREAIRILSSQEGVELRAKHQD 390 (514)
Q Consensus 335 G-G~l~~~~~~~~~l~~~~~~~~-------------~----------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 390 (514)
| |++++++++++.+.....++. + ..+.+...++++.++++.+...++++++++.++
T Consensus 284 ~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~ 363 (465)
T 3e9k_A 284 GIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVL 363 (465)
T ss_dssp CCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred ceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 4 889988888765543222110 0 114567778888889988766668899999999
Q ss_pred HHHHHHHHHHh-----------CCCccccCC-----CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEE
Q psy16848 391 IVAYLRNELIQ-----------IGFPVEHTP-----SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKI 454 (514)
Q Consensus 391 ~~~~l~~~L~~-----------~g~~~~~~~-----~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~i 454 (514)
+.+++.+.|++ .++.+..+. ++++++.++. +..++.+.|. ++||.+.. ..++++
T Consensus 364 ~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~--~~~~l~~~L~-~~Gi~v~~-------~~~~~i 433 (465)
T 3e9k_A 364 LTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV--PNKDVFQELE-KRGVVCDK-------RNPNGI 433 (465)
T ss_dssp HHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECC--TTCCHHHHHH-TTTEECEE-------ETTTEE
T ss_pred HHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecC--CHHHHHHHHH-HCCEEEec-------CCCCEE
Confidence 99999999988 567666553 6688888762 3567888895 89999862 224699
Q ss_pred EEEe-CCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 455 RLAP-TPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 455 Rl~~-~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
|+++ +..+|++|++++++.|++++++.
T Consensus 434 Ris~~~~~~t~edi~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 434 RVAPVPLYNSFHDVYKFTNLLTSILDSA 461 (465)
T ss_dssp EEBCCTTTCCHHHHHHHHHHHHHHHTC-
T ss_pred EEeCcccCCCHHHHHHHHHHHHHHHHhc
Confidence 9998 78999999999999999988754
No 139
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.95 E-value=2.8e-26 Score=233.06 Aligned_cols=221 Identities=15% Similarity=0.212 Sum_probs=164.1
Q ss_pred ChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHc--CCEEEEeccccccccCCCCCCccccCCCccCce
Q psy16848 244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH--GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMD 321 (514)
Q Consensus 244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~--gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~d 321 (514)
|.+.+++.+++ .++++|++++++||||.+.|+++|.++|++| |+++|+|++|+++.. ++ +.. ..++|
T Consensus 125 d~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~-----~~-~~~--~~~~d 193 (385)
T 2bkw_A 125 PLELITEKLSQ---NSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCE-----EF-EFD--EWGVD 193 (385)
T ss_dssp CHHHHHHHHHH---SCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTS-----CC-CTT--TTTCS
T ss_pred CHHHHHHHHhc---CCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCc-----cc-ccc--ccCce
Confidence 55666666654 2478999999999999999999999999999 999999999986542 11 111 23679
Q ss_pred EEEcCCccccc-CCC-eEEEecHHHHH-HHHh----------------------hcCc-eEeccCCcHHHHHHHHHHHHH
Q psy16848 322 IISGTLGKAFG-NIG-GYIVGTKNFID-TIRS----------------------YAAG-FIFTTSLPPTVLAGAREAIRI 375 (514)
Q Consensus 322 i~~~S~sK~lg-~~G-G~l~~~~~~~~-~l~~----------------------~~~~-~~~~~~~~~~~~~a~~~~l~~ 375 (514)
++++|+||+++ +.| |++++++++++ .+.. ...+ ..+..+.+...+.++.++++.
T Consensus 194 ~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~ 273 (385)
T 2bkw_A 194 FALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKE 273 (385)
T ss_dssp EEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH
T ss_pred EEEecCccccccCCcceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHH
Confidence 99999999775 567 99999988776 4421 1110 000124667777778888887
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHH-HhCCCccccC------CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC
Q psy16848 376 LSSQEGVELRAKHQDIVAYLRNEL-IQIGFPVEHT------PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP 448 (514)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~~~L-~~~g~~~~~~------~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~ 448 (514)
+.+.++++++++++++++++.+.| +++++.+..+ .++++++.+++ ..++.+.|. ++||.+.++..+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~-~~gi~v~~g~~~~-- 347 (385)
T 2bkw_A 274 ILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVAD---PPDVIAFLK-SHGVVIAGGIHKD-- 347 (385)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSC---HHHHHHHHH-HTTEECBCCCCTT--
T ss_pred HHHccHHHHHHHHHHHHHHHHHHHHHhcCceecccCcccccCCceEEEecCC---HHHHHHHHH-HCCeEEeCCCCcc--
Confidence 654557788999999999999999 8777776532 35678888764 678889995 8999998876421
Q ss_pred CCCcEEEEE-eC---CCCCHHHHHHHHHHHHHHHHHc
Q psy16848 449 VGEEKIRLA-PT---PFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 449 ~~~~~iRl~-~~---~~~t~e~id~~~~~l~~~l~~~ 481 (514)
...+++|++ ++ ..++++|+++++++|+++++++
T Consensus 348 ~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~~ 384 (385)
T 2bkw_A 348 IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQRK 384 (385)
T ss_dssp TGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC-
T ss_pred cCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHhc
Confidence 235799999 65 2468999999999999987543
No 140
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.95 E-value=1.1e-25 Score=232.35 Aligned_cols=287 Identities=17% Similarity=0.139 Sum_probs=208.5
Q ss_pred chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848 59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ 138 (514)
Q Consensus 59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~ 138 (514)
.+..+++++++++++|.++.++++||++|+..++.++.+ +||+|+++.+.|.++...++.
T Consensus 113 ~~~~~~l~~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~~--~Gd~Vi~~~~~y~~~~~~~~~------------------ 172 (445)
T 1qgn_A 113 NPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVP--AGGHIVTTTDCYRKTRIFIET------------------ 172 (445)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSC--SSCEEEEETTSCHHHHHHHHH------------------
T ss_pred ChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC--CCCEEEEcCCCchhHHHHHHH------------------
Confidence 577899999999999998899999999999999988866 999999999999887643210
Q ss_pred HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848 139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP 218 (514)
Q Consensus 139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~ 218 (514)
T Consensus 173 -------------------------------------------------------------------------------- 172 (445)
T 1qgn_A 173 -------------------------------------------------------------------------------- 172 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCc-eEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecc
Q psy16848 219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP-KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV 297 (514)
Q Consensus 219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~-~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea 297 (514)
.+...|.++++++.+|.+.+++.+++ ++ ++|++++++||+|.+.|+++|.++|+++|+++|+|++
T Consensus 173 ----------~~~~~G~~v~~v~~~d~~~l~~ai~~----~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a 238 (445)
T 1qgn_A 173 ----------ILPKMGITATVIDPADVGALELALNQ----KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGT 238 (445)
T ss_dssp ----------TGGGGTCEEEEECSSCHHHHHHHHHH----SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECT
T ss_pred ----------HHHHcCCEEEEeCCCCHHHHHHHhcc----CCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECC
Confidence 11223455556665566666666653 36 8999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848 298 HAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI 373 (514)
Q Consensus 298 ~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l 373 (514)
|+.+... .. ...++|++++|+||++|+. +|++++++++++.+......+ +...++..+..+...+
T Consensus 239 ~~~~~~~-------~~--~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~--g~~~~~~~a~~~~~~l 307 (445)
T 1qgn_A 239 FATPLNQ-------KA--LALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHIL--GGALNPNAAYLIIRGM 307 (445)
T ss_dssp TTCTTTC-------CT--TTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHG
T ss_pred CcccccC-------Cc--cccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHHHh--CCCCCHHHHHHHHHhH
Confidence 9855421 11 1347899999999999874 599999999888886544333 3345666655554444
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHhC-CC-cccc-----------------CCCcEEEEEeCCC-ccHHHHHHHHHH
Q psy16848 374 RILSSQEGVELRAKHQDIVAYLRNELIQI-GF-PVEH-----------------TPSHIIPIKIGNP-ALNTKICDMLLK 433 (514)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~-----------------~~~~~~~i~l~~~-~~~~~~~~~Ll~ 433 (514)
+. +....++..++.+++.+.|++. ++ .+.. ..++++.+.++.. .....+.+.| +
T Consensus 308 ~~-----l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l-~ 381 (445)
T 1qgn_A 308 KT-----LHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDAL-K 381 (445)
T ss_dssp GG-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHC-S
T ss_pred HH-----HHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhC-C
Confidence 42 3345566677788888888886 33 2211 1466889998753 2345566665 3
Q ss_pred hCCeEEecccCCCC--------------------CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848 434 EKGHYVQPINYPTV--------------------PVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS 480 (514)
Q Consensus 434 ~~GI~v~~~~~~~~--------------------~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~ 480 (514)
..++.++.|..|.. ...++.||+|++ .||++.+++.|+++++.
T Consensus 382 ~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 382 IPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALDS 444 (445)
T ss_dssp SSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHHH
T ss_pred CceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHhh
Confidence 45777666654321 112579999998 46799999999988864
No 141
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.95 E-value=4.5e-26 Score=237.20 Aligned_cols=338 Identities=19% Similarity=0.163 Sum_probs=221.7
Q ss_pred CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-CCCcEEEEeccccccc
Q psy16848 16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-QKEAGLVFTSCYVAND 89 (514)
Q Consensus 16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~i~~~sGt~a~~ 89 (514)
+|+.++||.++ .+++ +|++.+++.+++++ +..+ .+..++.+++++++++++ +.+++++++||++|+.
T Consensus 55 ~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~-~~~~------~~~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~ 127 (453)
T 2cy8_A 55 DGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSH-GVQY------AASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTL 127 (453)
T ss_dssp TCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTT-TCSS------CSSCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHH
T ss_pred CCCEEEECcccHhhcccCCCCHHHHHHHHHHHHh-CCCC------CCCCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHH
Confidence 67788999766 5554 78999999999976 3221 134578889999998888 5677888999999999
Q ss_pred cchhh---ccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccch
Q psy16848 90 STLFT---LGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL 166 (514)
Q Consensus 90 ~~l~~---l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
.++.. +.. +++.|+.++.+|.....++...+.. +.. |.. .|.
T Consensus 128 ~al~~ar~~~~--~~~vi~~~~~yhg~~~~~~~~~~~~---~~~-----------------~~~---~g~---------- 172 (453)
T 2cy8_A 128 LALRVARAFTG--RRMILRFEGHYHGWHDFSASGYNSH---FDG-----------------QPA---PGV---------- 172 (453)
T ss_dssp HHHHHHHHHHC--CCEEEEECC----------------------------------------------------------
T ss_pred HHHHHHHHhhC--CCEEEEEcCCcCCCchhhHhhcCCc---cCC-----------------CcC---CCC----------
Confidence 99887 433 5555555544554433222222110 000 000 000
Q ss_pred hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848 167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN 246 (514)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~ 246 (514)
-......+..++.+|++
T Consensus 173 ---------------------------------------------------------------~~~~~~~~~~~~~~d~~ 189 (453)
T 2cy8_A 173 ---------------------------------------------------------------LPETTANTLLIRPDDIE 189 (453)
T ss_dssp ------------------------------------------------------------------CGGGEEEECTTCHH
T ss_pred ---------------------------------------------------------------CccccCceeecCCCCHH
Confidence 00001134455566888
Q ss_pred HHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccc-cCCCCCCccccCCCccCce
Q psy16848 247 HLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGL-YGEHGAGIGERDGQLHNMD 321 (514)
Q Consensus 247 ~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~-~g~~~~~~~~~~~~~~~~d 321 (514)
.+++.+++.. +++++|++++++|++|.+.+ +++|+++|++||+++|+||+|+ |+ .|.. ...+..+. .+|
T Consensus 190 ~le~~l~~~~-~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~~g~~--~~~~~~~~--~~d 263 (453)
T 2cy8_A 190 GMREVFANHG-SDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVIS-GFRVGNH--GMQALLDV--QPD 263 (453)
T ss_dssp HHHHHHHHHG-GGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTCTT--HHHHHHTC--CCS
T ss_pred HHHHHHHhcC-CCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc-ccccCch--hhhHHhCC--CCc
Confidence 8888887532 35789999998889998877 9999999999999999999999 33 2211 11122232 578
Q ss_pred EEEcCCcccccC--CCeEEEecHHHHHHHHhh--c-CceEeccCCcHHHHHHHHHHHHH-hhhchHHHHHHHHHHHHHHH
Q psy16848 322 IISGTLGKAFGN--IGGYIVGTKNFIDTIRSY--A-AGFIFTTSLPPTVLAGAREAIRI-LSSQEGVELRAKHQDIVAYL 395 (514)
Q Consensus 322 i~~~S~sK~lg~--~GG~l~~~~~~~~~l~~~--~-~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~~l 395 (514)
++ |+||++++ ++|++++++++++.+... . .....+.+.+++.++++.++++. + .+. ..++++++++++
T Consensus 264 i~--s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~~~---~~~~~~~~~~~l 337 (453)
T 2cy8_A 264 LT--CLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL-EDD---VCAKINDLGQFA 337 (453)
T ss_dssp EE--EEEGGGGTTSSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH-HTT---HHHHHHHHHHHH
T ss_pred EE--EEChhhhCCcceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh-hhh---HHHHHHHHHHHH
Confidence 77 89999986 239999999888776541 1 11112447889999999999987 6 333 667778888888
Q ss_pred HHHHHhC----CCcc-ccCCCcEEEEEeCC-----C--------------ccHHHHHHHHHHhCCeEEecccCCCCCCCC
Q psy16848 396 RNELIQI----GFPV-EHTPSHIIPIKIGN-----P--------------ALNTKICDMLLKEKGHYVQPINYPTVPVGE 451 (514)
Q Consensus 396 ~~~L~~~----g~~~-~~~~~~~~~i~l~~-----~--------------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~ 451 (514)
.+.|+++ ++.. ..+.+.++++.++. . ....++.+.|+ ++||.+.++ .
T Consensus 338 ~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~Gv~v~~~--------~ 408 (453)
T 2cy8_A 338 REAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALI-LEGVDIGGR--------G 408 (453)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHH-HTTEECBTT--------T
T ss_pred HHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHH-HCCeEEeCC--------C
Confidence 8777654 4332 45677788888874 1 12567888996 899998531 1
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848 452 EKIRLAPTPFHTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 452 ~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~ 482 (514)
.+|+ +..++++++++++++|+++++++.
T Consensus 409 -~~~l--~~~~t~~~i~~~l~~l~~~l~~~~ 436 (453)
T 2cy8_A 409 -SVFL--SAQHEREHVEHLVTTFDRVLDRLA 436 (453)
T ss_dssp -EEEC--CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred -CEEe--eccCCHHHHHHHHHHHHHHHHHHH
Confidence 3555 467899999999999999987753
No 142
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.95 E-value=1.8e-26 Score=244.64 Aligned_cols=339 Identities=11% Similarity=-0.056 Sum_probs=227.4
Q ss_pred eeecccCCCC-CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC-------CcEEEEeccccccccc
Q psy16848 20 TCRLSSVQYK-VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK-------EAGLVFTSCYVANDST 91 (514)
Q Consensus 20 ~~d~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-------~~~i~~~sGt~a~~~~ 91 (514)
++|++.+.+. .+|++.+++.+++.... +. ....|..++.+++++.+.+.++. ++.+++++||+|+..+
T Consensus 105 ~i~l~~g~~~~~~~~~v~a~~~~~~~~~--y~--~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~ 180 (533)
T 3f6t_A 105 AVNYCHTELGLNRDKVVAEWVNGAVANN--YP--VPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYA 180 (533)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHTCS--CC--SSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHH
T ss_pred heeccCCCCCcCCcHHHHHHHHHHHhCC--CC--CCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHH
Confidence 4666554444 35778888877776422 11 12235566777777777655232 3556667778888888
Q ss_pred hhh-----ccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccch
Q psy16848 92 LFT-----LGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL 166 (514)
Q Consensus 92 l~~-----l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
+.+ +.. +||+|+++.++|.+....++..|..++.++....+
T Consensus 181 ~~~l~~~~l~~--~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~-------------------------------- 226 (533)
T 3f6t_A 181 FHSLAENHLLK--KGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYE-------------------------------- 226 (533)
T ss_dssp HHHHHHTTSSC--TTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEET--------------------------------
T ss_pred HHHhhhhhccC--CcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCc--------------------------------
Confidence 876 544 99999999999999998888877776655431000
Q ss_pred hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848 167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN 246 (514)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~ 246 (514)
..+.+ -|.+
T Consensus 227 --------------------------~~~~~---------------------------------------------~d~~ 235 (533)
T 3f6t_A 227 --------------------------KNDWE---------------------------------------------IEPN 235 (533)
T ss_dssp --------------------------TTTSE---------------------------------------------ECHH
T ss_pred --------------------------ccCCC---------------------------------------------CCHH
Confidence 00000 0334
Q ss_pred HHHHHHhhccCCCceEEEEecCCCCCccccCH---HHHHHHHH-HcCCEEEEeccccccccCCCCCCccccCCCccCceE
Q psy16848 247 HLTQVLENMDVKIPKLVAFETVHSMTGAICPL---KELCEVSH-QHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDI 322 (514)
Q Consensus 247 ~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l---~~l~~l~~-~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di 322 (514)
.+++.+ ++++++|++++|+||||.+++. ++|.++|+ +||+++|+||+|+....+ +.++.. ...+.++
T Consensus 236 ~l~~~l----~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~--~~~~~~---~~~~~~i 306 (533)
T 3f6t_A 236 EIEKLK----DPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPN--FKSIYS---VVPYNTM 306 (533)
T ss_dssp HHHHHS----CTTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTT--CCCHHH---HSGGGEE
T ss_pred HHHHHh----CCCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccC--ccCHhh---cCCCCEE
Confidence 444433 4568999999999999999994 58888898 589999999999833321 111211 1236789
Q ss_pred EEcCCcccccCCC---eEEEecHH-----HHHHH--------------------------------HhhcCceEeccCCc
Q psy16848 323 ISGTLGKAFGNIG---GYIVGTKN-----FIDTI--------------------------------RSYAAGFIFTTSLP 362 (514)
Q Consensus 323 ~~~S~sK~lg~~G---G~l~~~~~-----~~~~l--------------------------------~~~~~~~~~~~~~~ 362 (514)
+++||||.+|.+| ||++++++ +++.+ ....... +.+.+
T Consensus 307 ~~~S~SK~~g~~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~--~~~~~ 384 (533)
T 3f6t_A 307 LVYSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYH--TAGLS 384 (533)
T ss_dssp EEEESHHHHTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGG--GCSCC
T ss_pred EEecCcccCCCcccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhc--ccCCC
Confidence 9999999999778 99998766 33322 1222222 33456
Q ss_pred HHHHHH----HHHHHH-----HhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCc-EEEEEeCC------------
Q psy16848 363 PTVLAG----AREAIR-----ILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSH-IIPIKIGN------------ 420 (514)
Q Consensus 363 ~~~~~a----~~~~l~-----~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~i~l~~------------ 420 (514)
.+.+.+ +..++. .....++++++++++++++++.+.|. .++.+..+.++ ++++.++.
T Consensus 385 ~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~ 463 (533)
T 3f6t_A 385 TPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-APKDETDTNTHYYSLIDIYRLAEKIYGKEFRD 463 (533)
T ss_dssp HHHHHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-CCccccCCCceEEEEEehHhhhhhccchHHHH
Confidence 655555 334442 11235677889999999999999997 77766556555 45555542
Q ss_pred ----CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848 421 ----PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 421 ----~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~ 482 (514)
..+..+++..+++++||.+.|+..|..+ .+++|++++ ..+++++++++++|+++++++.
T Consensus 464 ~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~--~~~iRls~a-~~~~e~i~~~i~~L~~~l~~~~ 526 (533)
T 3f6t_A 464 YLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAK--PGELRVSQA-NLPTEDYALIGKQVLELLKEYY 526 (533)
T ss_dssp HHHHHCCHHHHHHHHHHHTTSSSCTTEEECSS--TTEEEEESS-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccCCHHHHHHHHHHhCCEEEeCCcccCCC--CCEEEEEEe-eCCHHHHHHHHHHHHHHHHHHH
Confidence 0234577777767889999999876653 579999996 4689999999999999988753
No 143
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.95 E-value=3.2e-26 Score=228.62 Aligned_cols=305 Identities=13% Similarity=0.037 Sum_probs=222.9
Q ss_pred eeeecccCCC-C-CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC---C--CcEEEEeccccccccc
Q psy16848 19 VTCRLSSVQY-K-VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ---K--EAGLVFTSCYVANDST 91 (514)
Q Consensus 19 ~~~d~~~~~~-~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~--~~~i~~~sGt~a~~~~ 91 (514)
.++||+++.. + .+|++.+++.+++...+. . . ++.. ...++++.++++++ . +..+++++|++++..+
T Consensus 20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~--~--~--y~~~-~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~ 92 (335)
T 1uu1_A 20 DKTYLALNENPFPFPEDLVDEVFRRLNSDAL--R--I--YYDS-PDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVM 92 (335)
T ss_dssp CSEEESSCCCSSCCCHHHHHHHHHTCCGGGG--G--S--CCCS-SCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHH
T ss_pred cceECCCCCCCCCCCHHHHHHHHHHhhhhhh--h--c--CCCC-chHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHH
Confidence 5788876655 3 478899988887632111 1 1 1111 25788999999988 3 3455556667777777
Q ss_pred hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848 92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE 171 (514)
Q Consensus 92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
+.++ ||.|+++ +.|.+....++..|.+++.++.++ +
T Consensus 93 ~~~~-----gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~~-~------------------------------------- 128 (335)
T 1uu1_A 93 MLMF-----DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLTK-D------------------------------------- 128 (335)
T ss_dssp HHHS-----SEEEECS-SSCHHHHHHHHHHTCEEEECCCCT-T-------------------------------------
T ss_pred HHHh-----CCcEEEC-CCcHHHHHHHHHcCCeEEEeccCC-C-------------------------------------
Confidence 7665 7999999 999998887777777766554310 0
Q ss_pred hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848 172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV 251 (514)
Q Consensus 172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~ 251 (514)
.+ .|.+.+
T Consensus 129 ------------------------~~---------------------------------------------~d~~~l--- 136 (335)
T 1uu1_A 129 ------------------------LR---------------------------------------------IPEVNV--- 136 (335)
T ss_dssp ------------------------SC---------------------------------------------CCCCCC---
T ss_pred ------------------------CC---------------------------------------------CCHHHc---
Confidence 00 011111
Q ss_pred HhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848 252 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF 331 (514)
Q Consensus 252 l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l 331 (514)
++++++++++|+||||.++|.+++.++++.+| ++|+||+|+.+..+ ++....+ ..+.+++++|+||++
T Consensus 137 ------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~----~~~~~~~-~~~~~i~~~s~sK~~ 204 (335)
T 1uu1_A 137 ------GEGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGE----SYVDFLK-KYENLAVIRTFSKAF 204 (335)
T ss_dssp ------CTTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCC----CCGGGGG-TCSSEEEEEESTTTT
T ss_pred ------CCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcch----hHHHHhh-hCCCEEEEecchhhc
Confidence 35789999999999999999999999999889 99999999943211 1222111 235789999999999
Q ss_pred cCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCcccc
Q psy16848 332 GNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEH 408 (514)
Q Consensus 332 g~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 408 (514)
|.+| ||+++++++++.+......+ +.++..+.++.++++. .+++++.+++++++++++.+.|++.|+.+.+
T Consensus 205 g~~G~r~G~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 278 (335)
T 1uu1_A 205 SLAAQRVGYVVASEKFIDAYNRVRLPF----NVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREMGYRITD 278 (335)
T ss_dssp TCGGGCCEEEEECHHHHHHHHHHSCTT----CSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHTCCBCC
T ss_pred CCcccCeEEEEeCHHHHHHHHHhcCCC----CcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHCCcEEcC
Confidence 8657 99999999998887765433 6788888888888874 2456778889999999999999887776656
Q ss_pred CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848 409 TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV 477 (514)
Q Consensus 409 ~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~ 477 (514)
+.+.++++.++. .+..++.+.|. ++||.+.+ ..+++|++++ +++|+++++++|+++
T Consensus 279 ~~~~~~~~~~~~-~~~~~~~~~l~-~~gi~v~~--------~~~~iRis~~---~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 279 SRGNFVFVFMEK-EEKERLLEHLR-TKNVAVRS--------FREGVRITIG---KREENDMILRELEVF 334 (335)
T ss_dssp CCSSEEEEECCT-HHHHHHHHHHH-HHTEEEEE--------ETTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred CCCeEEEEECCC-CCHHHHHHHHH-HCCEEEEE--------CCCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 667788888875 45678889996 88999986 2458999997 578899999998753
No 144
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.90 E-value=2.7e-29 Score=256.56 Aligned_cols=342 Identities=12% Similarity=0.120 Sum_probs=232.4
Q ss_pred eeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccccccccch
Q psy16848 19 VTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVANDSTL 92 (514)
Q Consensus 19 ~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a~~~~l 92 (514)
.++||..+++ ..+|++.+++.+++......++ ....++.+++++++.+.+| .+..+++++|++|+..++
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~-----~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~ 106 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYAEQLVYGYT-----YASDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAI 106 (392)
Confidence 5566644433 2368899999988865211111 1123444444444444444 345666777788999999
Q ss_pred hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848 93 FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV 172 (514)
Q Consensus 93 ~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
.++.. +||.|+++.+.|.+....++..|.+++.++..+.+ |.|
T Consensus 107 ~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~--------------------g~~--------------- 149 (392)
T 3b1d_A 107 QAFTK--EGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEEN--------------------GLF--------------- 149 (392)
Confidence 88865 99999999999999887777777766554331000 000
Q ss_pred hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848 173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL 252 (514)
Q Consensus 173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l 252 (514)
..|.+.+++.+
T Consensus 150 ---------------------------------------------------------------------~~d~~~l~~~l 160 (392)
T 3b1d_A 150 ---------------------------------------------------------------------QIDFEQLENDI 160 (392)
Confidence 00333344444
Q ss_pred hhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEcCCc
Q psy16848 253 ENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISGTLG 328 (514)
Q Consensus 253 ~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~S~s 328 (514)
++ ++++++++++++||+|.+++ +++|.++|++||+++|+||+|+.+.. +....++........+.+++++|+|
T Consensus 161 ~~---~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~s 237 (392)
T 3b1d_A 161 VE---NDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSAT 237 (392)
Confidence 31 34778889999999999988 89999999999999999999995433 2221122111110035678899999
Q ss_pred ccccCCC---eEEEecH-HHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh-C-
Q psy16848 329 KAFGNIG---GYIVGTK-NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ-I- 402 (514)
Q Consensus 329 K~lg~~G---G~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~- 402 (514)
|.+|.+| ||+++++ ++++.+......+.+ .+.+++.++++.++++.. ..++++.+++++++++++.+.|++ +
T Consensus 238 K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~ 315 (392)
T 3b1d_A 238 KTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNH-HEVSSLGYIATETAYRYG-KPWLVALKAVLEENIQFAVEYFAQEAP 315 (392)
Confidence 9998556 9988865 588888765544421 145777788888888743 356677888899999999999987 4
Q ss_pred CCccccCCCcEE-EEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848 403 GFPVEHTPSHII-PIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK 479 (514)
Q Consensus 403 g~~~~~~~~~~~-~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~ 479 (514)
++.+..+.++++ ++.++. ..+..++.+.|++++||.+.++..+. +.+++++|++++. +++++++++++|+++++
T Consensus 316 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~~~--~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 316 RLKVMKPQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYG-SEGELHARLNIAA--PKSLVEEICKRIVCCLP 391 (392)
Confidence 777766776655 467664 23466788888547899999987644 3356799999883 67899999999988764
No 145
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.94 E-value=3.3e-26 Score=235.12 Aligned_cols=335 Identities=13% Similarity=0.031 Sum_probs=223.6
Q ss_pred CCceeeecccCCCCC-------ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-C-------CCcEEE
Q psy16848 16 SNRVTCRLSSVQYKV-------PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-Q-------KEAGLV 80 (514)
Q Consensus 16 ~g~~~~d~~~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~-------~~~~i~ 80 (514)
+|..++||..+.|++ +|.+.+++.++++..+. ...+ +......++++.+++++ + .++.++
T Consensus 28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~~y----~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~ 102 (412)
T 1ajs_A 28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSL-NHEY----LPILGLAEFRTCASRLALGDDSPALQEKRVGG 102 (412)
T ss_dssp CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTC-CCCC----CCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhh-ccCC----CCCCCCHHHHHHHHHHHhcCCCCccCCCcEEE
Confidence 466789998887642 36788888777632111 1111 11222356666666666 3 256777
Q ss_pred --EeccccccccchhhccccCCC-----ceEEecCccchhhhhhhhcCCCC-eeeccCCChHHHHHHHHhcccCCCcEEE
Q psy16848 81 --FTSCYVANDSTLFTLGKMIPG-----LHYISDAGNHASMIQGIRNSSAP-KIIYRHNDVNHLTQVLENMDVKIPKLVA 152 (514)
Q Consensus 81 --~~sGt~a~~~~l~~l~~~~~g-----d~v~~~~~~h~~~~~~~~~~~~~-~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 152 (514)
++||++|+..++..+....+| |.|+++.++|.+....++..|.+ ++.++....
T Consensus 103 ~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~------------------- 163 (412)
T 1ajs_A 103 VQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDT------------------- 163 (412)
T ss_dssp EEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEET-------------------
T ss_pred EECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecC-------------------
Confidence 888899988885432212389 99999999999998888888887 765543100
Q ss_pred eeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhh
Q psy16848 153 FETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRN 232 (514)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~ 232 (514)
.+.
T Consensus 164 -----------------------------------------~~~------------------------------------ 166 (412)
T 1ajs_A 164 -----------------------------------------EKR------------------------------------ 166 (412)
T ss_dssp -----------------------------------------TTT------------------------------------
T ss_pred -----------------------------------------CCC------------------------------------
Confidence 000
Q ss_pred CCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccc-ccccC--CC
Q psy16848 233 SSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHA-VGLYG--EH 306 (514)
Q Consensus 233 ~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~-~g~~g--~~ 306 (514)
..|.+.+++.+.+. ..+++++++++++||||.+++ +++|.++|++||+++|+||+|. ++..+ ..
T Consensus 167 ---------~~d~~~l~~~l~~~-~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~ 236 (412)
T 1ajs_A 167 ---------GLDLQGFLSDLENA-PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKD 236 (412)
T ss_dssp ---------EECHHHHHHHHHHS-CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHH
T ss_pred ---------ccCHHHHHHHHHhC-CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCccccc
Confidence 00455566666543 234788889999999999988 6789999999999999999998 33321 01
Q ss_pred CCCccccCCCccCceEEEcCCcccccCCC---eEEEe---cHH----HHHHHHhhcCceEeccCCcHHHHHHHHHHHHHh
Q psy16848 307 GAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVG---TKN----FIDTIRSYAAGFIFTTSLPPTVLAGAREAIRIL 376 (514)
Q Consensus 307 ~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~ 376 (514)
..++..... ..+.++++.|+||.+|+.| ||+++ +++ +++.+....... ....+++.+.++.++|+..
T Consensus 237 ~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~ 313 (412)
T 1ajs_A 237 AWAIRYFVS-EGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVT--WSNPPAQGARIVARTLSDP 313 (412)
T ss_dssp THHHHHHHH-TTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTT--TSSCCSHHHHHHHHHHHSH
T ss_pred chHHHHHhc-cCCcEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcc--cCCCChHHHHHHHHHHcCc
Confidence 111111111 1245699999999999877 99998 777 444444321111 1134777788888888743
Q ss_pred h-----hchHHHHHHHHHHHHHHHHHHHHhCC----CccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCC
Q psy16848 377 S-----SQEGVELRAKHQDIVAYLRNELIQIG----FPVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPT 446 (514)
Q Consensus 377 ~-----~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~ 446 (514)
. ..++++.+++++++++++.+.|++++ +.+..+.++ ++++.++ .++...+++++||.+.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~gv~v~~----- 383 (412)
T 1ajs_A 314 ELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLN-----PKQVEYLINQKHIYLLP----- 383 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCC-----HHHHHHHHHTTCEECCT-----
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCC-----HHHHHHHHHhCCEEecC-----
Confidence 2 34667889999999999999999886 666555554 4443332 34455554689999874
Q ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 447 VPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 447 ~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
.+|++++. .+++++++++++|+++++++
T Consensus 384 ------~~Ris~~~-~~~~~i~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 384 ------SGRINMCG-LTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp ------TSEEEGGG-CCTTTHHHHHHHHHHHHHHC
T ss_pred ------CcEEEeee-CCHHHHHHHHHHHHHHHHhc
Confidence 26999983 58999999999999998764
No 146
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.94 E-value=5.6e-26 Score=233.65 Aligned_cols=336 Identities=16% Similarity=0.183 Sum_probs=219.4
Q ss_pred eecccCCCCCChhHHHHHHHHHH-HhCCCCCCcCcccCc---chHHHHHHHHHHhHcCCCcE-EEEeccccccccchhhc
Q psy16848 21 CRLSSVQYKVPKGGRKCLGEALE-KFGTGAGGTRNISGN---SLFHEKLEEDVAKLHQKEAG-LVFTSCYVANDSTLFTL 95 (514)
Q Consensus 21 ~d~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~-i~~~sGt~a~~~~l~~l 95 (514)
..+.+.+| .+|++.+++.+++. .++.+++++.+..+. ....+.+++++++++|.+.. ++++||++|+..++.++
T Consensus 34 ~~~~~~n~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~ 112 (420)
T 3gbx_A 34 ELIASENY-TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTAL 112 (420)
T ss_dssp ECCTTCCC-CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHH
T ss_pred eeeccCCC-CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHh
Confidence 34456666 58999999999884 443333333222221 23344555789999998765 55799999999998888
Q ss_pred cccCCCceEEecCccchhhhh-hh--hcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848 96 GKMIPGLHYISDAGNHASMIQ-GI--RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV 172 (514)
Q Consensus 96 ~~~~~gd~v~~~~~~h~~~~~-~~--~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
.+ +||.|+++.++|.+... +. ...+..+
T Consensus 113 ~~--~gd~v~~~~~~~~~~~~~~~~~~~~g~~~----------------------------------------------- 143 (420)
T 3gbx_A 113 LQ--PGDTVLGMNLAQGGHLTHGSPVNFSGKLY----------------------------------------------- 143 (420)
T ss_dssp CC--TTCEEEEEEEC------------CHHHHS-----------------------------------------------
T ss_pred cC--CCCEEEecchhhcceeccchhhhhcccce-----------------------------------------------
Confidence 66 99999999999987431 11 1111100
Q ss_pred hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec-----CCChhH
Q psy16848 173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR-----HNDVNH 247 (514)
Q Consensus 173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~-----~~d~~~ 247 (514)
..+.++ ..|.+.
T Consensus 144 ---------------------------------------------------------------~~~~~~~~~~~~~d~~~ 160 (420)
T 3gbx_A 144 ---------------------------------------------------------------NIVPYGIDESGKIDYDE 160 (420)
T ss_dssp ---------------------------------------------------------------EEEEEEECTTCSCCHHH
T ss_pred ---------------------------------------------------------------eEEeccCCccCCcCHHH
Confidence 111111 136777
Q ss_pred HHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCC
Q psy16848 248 LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 327 (514)
Q Consensus 248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~ 327 (514)
+++.+++. ++++|++++++|+ ...++++|.++|++||+++|+||+|+.+...... .......+|++++|+
T Consensus 161 l~~~i~~~---~~~~v~~~~~~~~--~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~-----~~~~~~~~di~~~s~ 230 (420)
T 3gbx_A 161 MAKLAKEH---KPKMIIGGFSAYS--GVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGV-----YPNPVPHAHVVTTTT 230 (420)
T ss_dssp HHHHHHHH---CCSEEEECCTTCC--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTS-----SCCSTTTSSEEEEES
T ss_pred HHHHHHhc---CCeEEEEecCccC--CccCHHHHHHHHHHcCCEEEEECCcchhceeccc-----CCcccccCCEEEeec
Confidence 77777653 3688999888775 4778999999999999999999999855542111 111112479999999
Q ss_pred cccc-cCCCeEEEecH---HHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC
Q psy16848 328 GKAF-GNIGGYIVGTK---NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIG 403 (514)
Q Consensus 328 sK~l-g~~GG~l~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 403 (514)
||++ |+.||++++++ ++.+.+.........+ +.+...++++..++.....++++++++++.++++++.+.|++.|
T Consensus 231 sK~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 309 (420)
T 3gbx_A 231 HKTLAGPRGGLILAKGGDEELYKKLNSAVFPSAQG-GPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNRG 309 (420)
T ss_dssp SGGGCSCSCEEEEESSCCHHHHHHHHHHHC----C-CCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCCCCCceEEEEcCCcHHHHHHhhhhcCCCCCC-CcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999 55679999987 7777776544333222 23344444444455544345667889999999999999999988
Q ss_pred Ccccc--CCCcEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCC---CCCCcEEEEEeCCC----CCHHHHHHHHHH
Q psy16848 404 FPVEH--TPSHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTV---PVGEEKIRLAPTPF----HTREMIDKFVTD 473 (514)
Q Consensus 404 ~~~~~--~~~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~---~~~~~~iRl~~~~~----~t~e~id~~~~~ 473 (514)
+.+.. +.++++++.++. ..+...+.+.| +++||.+.+...+.. +.+...+|++++.. .+++++++++++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~ 388 (420)
T 3gbx_A 310 YKVVSGGTENHLFLLDLVDKNLTGKEADAAL-GRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGW 388 (420)
T ss_dssp CEEGGGSCSSSEEEEECGGGTCCHHHHHHHH-HHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHH
T ss_pred CeeccCCCCCeEEEEEcCCCCCCHHHHHHHH-HHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHH
Confidence 87765 456677777654 23456677777 589999988433221 12345699998643 568999999999
Q ss_pred HHHHHHHc
Q psy16848 474 LLAVWKSL 481 (514)
Q Consensus 474 l~~~l~~~ 481 (514)
|++++++.
T Consensus 389 l~~~l~~~ 396 (420)
T 3gbx_A 389 MCDVLDNI 396 (420)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhCc
Confidence 99998875
No 147
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.90 E-value=3.2e-29 Score=259.32 Aligned_cols=327 Identities=18% Similarity=0.142 Sum_probs=232.4
Q ss_pred cCCceeeecccCCC---CC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-CCCcEEEEecccccc
Q psy16848 15 KSNRVTCRLSSVQY---KV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-QKEAGLVFTSCYVAN 88 (514)
Q Consensus 15 ~~g~~~~d~~~~~~---~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~i~~~sGt~a~ 88 (514)
.+|+.|+||.++.+ ++ ||++++++.+++.+ +... ....+...++++++++++ +.++++|++||++|+
T Consensus 97 ~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~-~~~~------~~~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~ 169 (465)
T 2yky_A 97 VDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAV-GLNL------STQTENEALFAEAVCDRFPSIDLVRFTNSGTEAN 169 (465)
Confidence 37788888877665 44 79999999999987 3221 123467789999999998 778899999999999
Q ss_pred ccchhhccccCCCceEEe-cCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848 89 DSTLFTLGKMIPGLHYIS-DAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK 167 (514)
Q Consensus 89 ~~~l~~l~~~~~gd~v~~-~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
+.+++.+....+++.|++ +..+|.....++ .| +.
T Consensus 170 ~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~--sg--~~----------------------------------------- 204 (465)
T 2yky_A 170 LMALATATAITGRKTVLAFDGGYHGGLLNFA--SG--HA----------------------------------------- 204 (465)
Confidence 999976532224455555 555555554333 11 00
Q ss_pred HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCC--CEEEecCCCh
Q psy16848 168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSA--PKIIYRHNDV 245 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~--~~~~v~~~d~ 245 (514)
..|. .++.++++|.
T Consensus 205 ----------------------------------------------------------------~~g~~~~~~~~~~~d~ 220 (465)
T 2yky_A 205 ----------------------------------------------------------------PTNAPYHVVLGVYNDV 220 (465)
Confidence 0000 2334455677
Q ss_pred hHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCce
Q psy16848 246 NHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMD 321 (514)
Q Consensus 246 ~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~d 321 (514)
+.+++.+++. .+++++|+++++++++|.+.+ +++|+++|++||+++|+||+|+ +..|..+ ..+..+. .+|
T Consensus 221 ~~l~~~l~~~-~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~--a~~~~gv--~pD 294 (465)
T 2yky_A 221 EGTADLLKRH-GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGG--AQEMLGI--SAD 294 (465)
Confidence 7777777653 246889999998888998777 8999999999999999999999 6544321 2233333 578
Q ss_pred EEEcCCcccccCCC---eEEEecHHHHHHHHhh--cC-ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy16848 322 IISGTLGKAFGNIG---GYIVGTKNFIDTIRSY--AA-GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYL 395 (514)
Q Consensus 322 i~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~--~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 395 (514)
++ ||+|++|+ | |++++++++++.+.+. .. ....+++.+++.++++.++|+.+.++. +.++++++.+++
T Consensus 295 i~--t~sK~lg~-G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~~~---~~~~~~~~~~~l 368 (465)
T 2yky_A 295 LT--TLGKYIGG-GMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTRQ---AASDLSASGDRF 368 (465)
Confidence 77 89999987 6 8999999999888761 11 122255789999999999999875443 778888888888
Q ss_pred HHHHHhC--CCcc---ccCCCcEEEEEeCC-C------------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEE
Q psy16848 396 RNELIQI--GFPV---EHTPSHIIPIKIGN-P------------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLA 457 (514)
Q Consensus 396 ~~~L~~~--g~~~---~~~~~~~~~i~l~~-~------------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~ 457 (514)
++.|+++ +..+ +...|.++++.+.+ . .....+.+.|+ ++||++.|+.+. .
T Consensus 369 ~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll-~~GV~v~p~~~~-------~---- 436 (465)
T 2yky_A 369 RANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHML-RKGIYLAPRGMY-------A---- 436 (465)
Confidence 8888775 2222 34567788877653 1 12456888886 899999876531 1
Q ss_pred eCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 458 PTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 458 ~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
++..+|++|+++++++++++++++
T Consensus 437 ~s~~~t~edid~~l~~l~~~l~~~ 460 (465)
T 2yky_A 437 LSLEIADAGRDAFAEALADFIGEQ 460 (465)
Confidence 444689999999999999988775
No 148
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.94 E-value=2.5e-26 Score=236.08 Aligned_cols=332 Identities=11% Similarity=0.064 Sum_probs=221.6
Q ss_pred CCceeeecccCCCCC-------ChhHHHHHHH-HHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-C-------CCcEE
Q psy16848 16 SNRVTCRLSSVQYKV-------PKGGRKCLGE-ALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-Q-------KEAGL 79 (514)
Q Consensus 16 ~g~~~~d~~~~~~~~-------~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~-------~~~~i 79 (514)
++..++||..+.|++ +|.+.+++.+ ++.. +. ...+....| ..++++.+++++ + .+..+
T Consensus 27 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~-~~-~~~y~~~~g----~~~lr~~ia~~~~~~~~~~~~~~~i~ 100 (412)
T 1yaa_A 27 QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDS-SY-NHEYLGITG----LPSLTSNAAKIIFGTQSDALQEDRVI 100 (412)
T ss_dssp CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCT-TC-CCCCCCTTC----CHHHHHHHHHHHHCTTCHHHHTTCEE
T ss_pred CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCc-cc-ccCCCCCCC----cHHHHHHHHHHHhcCCCCCCCcceEE
Confidence 456789999888743 3677777777 6542 11 111111223 345555555555 2 35567
Q ss_pred E--Eeccccccccch--hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeec
Q psy16848 80 V--FTSCYVANDSTL--FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFET 155 (514)
Q Consensus 80 ~--~~sGt~a~~~~l--~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~ 155 (514)
+ +++|++|+..++ ..+.. +||.|+++.++|.+....++..|.+++.++..+.+
T Consensus 101 ~~~t~g~~~a~~~~~~~~~~~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~--------------------- 157 (412)
T 1yaa_A 101 SVQSLSGTGALHISAKFFSKFF--PDKLVYLSKPTWANHMAIFENQGLKTATYPYWANE--------------------- 157 (412)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHC--TTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETT---------------------
T ss_pred EEeccchHhHHHHHHHHHHHhC--CCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCC---------------------
Confidence 6 777888887763 33333 99999999999999988888888877765430000
Q ss_pred cccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCC
Q psy16848 156 VHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSA 235 (514)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~ 235 (514)
+.
T Consensus 158 ---------------------------------------~~--------------------------------------- 159 (412)
T 1yaa_A 158 ---------------------------------------TK--------------------------------------- 159 (412)
T ss_dssp ---------------------------------------TT---------------------------------------
T ss_pred ---------------------------------------CC---------------------------------------
Confidence 00
Q ss_pred CEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC---CCCC
Q psy16848 236 PKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE---HGAG 309 (514)
Q Consensus 236 ~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~---~~~~ 309 (514)
..|.+.+++.+++. .++++++++++++||||.+++ +++|.++|++||+++|+||+|+....+. .+.+
T Consensus 160 ------~~d~~~l~~~l~~~-~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~ 232 (412)
T 1yaa_A 160 ------SLDLNGFLNAIQKA-PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYA 232 (412)
T ss_dssp ------EECHHHHHHHHHHS-CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHH
T ss_pred ------ccCHHHHHHHHHhC-CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHH
Confidence 01455555655542 122456777999999999998 6789999999999999999997333221 1111
Q ss_pred ccccCCCccC---ceEEEcCCcccccCCC---eEEE--e-----cHH----HHHHHHhhcCceEeccCCcHHHHHHHHHH
Q psy16848 310 IGERDGQLHN---MDIISGTLGKAFGNIG---GYIV--G-----TKN----FIDTIRSYAAGFIFTTSLPPTVLAGAREA 372 (514)
Q Consensus 310 ~~~~~~~~~~---~di~~~S~sK~lg~~G---G~l~--~-----~~~----~~~~l~~~~~~~~~~~~~~~~~~~a~~~~ 372 (514)
+..... ... .+++++|+||.+|+.| ||++ + +++ +++.+....... ..+.+...+.++.++
T Consensus 233 ~~~~~~-~~~~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~~a~~~~ 309 (412)
T 1yaa_A 233 VRLGVE-KLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSE--VSNPPAYGAKIVAKL 309 (412)
T ss_dssp HHHHHH-HTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTT--TSSCCHHHHHHHHHH
T ss_pred HHHHHh-cCCCCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhc--cCCCChHHHHHHHHH
Confidence 211111 112 6799999999999877 9988 7 566 777766532221 224477888888888
Q ss_pred HHHhh-----hchHHHHHHHHHHHHHHHHHHHHhCC----CccccCCCcEEE-EEeCCCccHHHHHHHHHHhCCeEEecc
Q psy16848 373 IRILS-----SQEGVELRAKHQDIVAYLRNELIQIG----FPVEHTPSHIIP-IKIGNPALNTKICDMLLKEKGHYVQPI 442 (514)
Q Consensus 373 l~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~-i~l~~~~~~~~~~~~Ll~~~GI~v~~~ 442 (514)
++... ..++++.+++++++++++.+.|++.+ +.+..+.++++. +.+ +...+ ..+++++||.+.+
T Consensus 310 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~l~~~gi~v~~- 383 (412)
T 1yaa_A 310 LETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL----TPQMV-KRLEETHAVYLVA- 383 (412)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCC----CHHHH-HHHHHHHCEECCT-
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCC----CHHHH-HHHHHhCCEEecc-
Confidence 87441 24677889999999999999999875 776666665443 322 23455 5554688999874
Q ss_pred cCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 443 NYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 443 ~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
++|++++. .+++++++++++|+++++.+
T Consensus 384 ----------~~Ris~~~-~~~~~i~~~~~~l~~~~~~~ 411 (412)
T 1yaa_A 384 ----------SGRASIAG-LNQGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp ----------TSEEEGGG-CCTTTHHHHHHHHHHHHHHC
T ss_pred ----------CcEEEEcc-CCHhHHHHHHHHHHHHHHhh
Confidence 47999983 58999999999999988753
No 149
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.94 E-value=1.2e-25 Score=237.72 Aligned_cols=332 Identities=14% Similarity=0.092 Sum_probs=231.4
Q ss_pred CChhHHHHHHHHHHHhCCCCC-CcCcccCcchHHHHHHHHHHhHcCCC----cE--EEEeccccccccchhhccccCCC-
Q psy16848 30 VPKGGRKCLGEALEKFGTGAG-GTRNISGNSLFHEKLEEDVAKLHQKE----AG--LVFTSCYVANDSTLFTLGKMIPG- 101 (514)
Q Consensus 30 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~----~~--i~~~sGt~a~~~~l~~l~~~~~g- 101 (514)
+++.+.+++.+++..+..... .+....+..++..++++++++++|.+ .+ ++++|||+|+..++.++.. +|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~--~g~ 185 (514)
T 3mad_A 108 GDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRD--WAR 185 (514)
T ss_dssp CCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHH--HHH
T ss_pred CCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHH--Hhh
Confidence 357788888888876443222 11222233466677888889999876 45 8888899999999988865 54
Q ss_pred -------ceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhh
Q psy16848 102 -------LHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSH 174 (514)
Q Consensus 102 -------d~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (514)
|.|+++.+.|.+...+++..|.+++.++.++ +
T Consensus 186 ~~~g~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~~~-~---------------------------------------- 224 (514)
T 3mad_A 186 ATKGITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDA-D---------------------------------------- 224 (514)
T ss_dssp HHHCCSSCEEEEETTSCTHHHHHHHHHTCEEEEECBCT-T----------------------------------------
T ss_pred hhcCCCCCeEEEeCccchHHHHHHHHcCCeeEEeeeCC-C----------------------------------------
Confidence 9999999999999888877777766554320 0
Q ss_pred hcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhh
Q psy16848 175 QHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLEN 254 (514)
Q Consensus 175 ~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~ 254 (514)
+ .-|.+.+++.+
T Consensus 225 ----------------------~--------------------------------------------~~d~~~Le~~i-- 236 (514)
T 3mad_A 225 ----------------------Y--------------------------------------------RADVAAMREAI-- 236 (514)
T ss_dssp ----------------------S--------------------------------------------CBCHHHHHHHC--
T ss_pred ----------------------C--------------------------------------------CCCHHHHHHHh--
Confidence 0 00444444444
Q ss_pred ccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecccccccc---CCCCCCccccCCCccCceEEEcCCcccc
Q psy16848 255 MDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY---GEHGAGIGERDGQLHNMDIISGTLGKAF 331 (514)
Q Consensus 255 ~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~---g~~~~~~~~~~~~~~~~di~~~S~sK~l 331 (514)
++++++|++++++||+|.+.++++|.++|++||+++|+|++|+.+.. +..+.+.........+.|++++|+||++
T Consensus 237 --~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l 314 (514)
T 3mad_A 237 --TPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYG 314 (514)
T ss_dssp --CTTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTT
T ss_pred --ccCCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhcc
Confidence 34689999999999999999999999999999999999999984332 1122111122222346899999999995
Q ss_pred -cCCC-eEEEecHHHHHHHHhhcC-c--------eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q psy16848 332 -GNIG-GYIVGTKNFIDTIRSYAA-G--------FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI 400 (514)
Q Consensus 332 -g~~G-G~l~~~~~~~~~l~~~~~-~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 400 (514)
++.| |+++.+++.......... . ..+..+.+.....++.+++..+...++++..++..++++++.+.|+
T Consensus 315 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~ 394 (514)
T 3mad_A 315 YGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVR 394 (514)
T ss_dssp CCCSSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444 888777665443221110 0 0011233444455666666666566778899999999999999999
Q ss_pred hC-CCccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeC-CCCCHHHHHHHHHHHHHHH
Q psy16848 401 QI-GFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPT-PFHTREMIDKFVTDLLAVW 478 (514)
Q Consensus 401 ~~-g~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~-~~~t~e~id~~~~~l~~~l 478 (514)
+. ++.+..+...++++... ..+..++.+.|. ++||.+. +.. ..+.+|++++ ..++++++++++++|++++
T Consensus 395 ~~~g~~~~~~~~~~~~~~~~-~~~~~~l~~~L~-~~Gi~v~-g~~-----~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l 466 (514)
T 3mad_A 395 AIPSLKILGDPLWVIAVASD-ELNIYQVMEEMA-GRGWRLN-GLH-----RPPAFHVALTLRHTEPGVVDRFLADLQDAV 466 (514)
T ss_dssp TSTTCEESSCCSSEEEEECS-SSCHHHHHHHHH-TTTCBCE-EET-----TTTEEEEECCGGGGSTTHHHHHHHHHHHHH
T ss_pred hCCCeEEeCCCeEEEEEeCC-CCCHHHHHHHHH-hcCCEec-cCC-----CCCeEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 97 78777666667777653 345788999996 8899883 322 1357999997 4456699999999999998
Q ss_pred HHcC
Q psy16848 479 KSLD 482 (514)
Q Consensus 479 ~~~~ 482 (514)
+++.
T Consensus 467 ~~~~ 470 (514)
T 3mad_A 467 AQVR 470 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 150
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.94 E-value=3.5e-26 Score=229.94 Aligned_cols=332 Identities=14% Similarity=0.083 Sum_probs=223.4
Q ss_pred CCceeeecccCCCC-CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccch
Q psy16848 16 SNRVTCRLSSVQYK-VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTL 92 (514)
Q Consensus 16 ~g~~~~d~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l 92 (514)
+...+++|+++... .+|++.+++.+++..|.. ..|..+..+++++++++++|.+ .+++++||++|+..++
T Consensus 11 ~~p~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~-------~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~ 83 (359)
T 1svv_A 11 AKPKPYSFVNDYSVGMHPKILDLMARDNMTQHA-------GYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIAC 83 (359)
T ss_dssp ----CEECSCSCSSCCCHHHHHHHHHHTTCCCC-------STTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHH
T ss_pred CCCeeEEecCCCcCCCCHHHHHHHHHHHhhccc-------cccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHH
Confidence 34457888763322 368999999988764322 2245688999999999999864 3677788999999999
Q ss_pred hhccccCCCceEEecCccchhhhhh--hhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848 93 FTLGKMIPGLHYISDAGNHASMIQG--IRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 170 (514)
Q Consensus 93 ~~l~~~~~gd~v~~~~~~h~~~~~~--~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
.++.. +||.|+++.+.|.+...+ ++..|.+++.++.++.
T Consensus 84 ~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~------------------------------------- 124 (359)
T 1svv_A 84 SLALR--PWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDG------------------------------------- 124 (359)
T ss_dssp HHHCC--TTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCTTS-------------------------------------
T ss_pred HHHhC--CCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCCCC-------------------------------------
Confidence 98866 999999999999998874 6666666665543210
Q ss_pred hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848 171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ 250 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ 250 (514)
.-|.+.+++
T Consensus 125 -----------------------------------------------------------------------~~d~~~l~~ 133 (359)
T 1svv_A 125 -----------------------------------------------------------------------KLRVADIES 133 (359)
T ss_dssp -----------------------------------------------------------------------CCCHHHHHH
T ss_pred -----------------------------------------------------------------------eecHHHHHH
Confidence 013455555
Q ss_pred HHhhc---cCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEE
Q psy16848 251 VLENM---DVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS 324 (514)
Q Consensus 251 ~l~~~---~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~ 324 (514)
.+++. ...++++++++++ ||+|.++| +++|.++|++||+++|+||+|.....+..+... .........|+++
T Consensus 134 ~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~~d~~~ 211 (359)
T 1svv_A 134 ALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDL-TLADIARLTDMFY 211 (359)
T ss_dssp HHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCC-CHHHHHHHCSEEE
T ss_pred HHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcch-hhhhhhhcCCEEE
Confidence 55432 1123789999998 79999999 899999999999999999999421122111110 0001113578999
Q ss_pred cCCcccccCCC-eEEEecHHHHHHHHhhc--CceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848 325 GTLGKAFGNIG-GYIVGTKNFIDTIRSYA--AGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ 401 (514)
Q Consensus 325 ~S~sK~lg~~G-G~l~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 401 (514)
.|++|+.++.| |+++.++++++.+.... .+..+ ..+.....++.+ .+.+...++.+++++++++++.+.|+.
T Consensus 212 ~s~~K~g~~~~~g~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~l~~~L~~ 286 (359)
T 1svv_A 212 IGATKAGGMFGEALIILNDALKPNARHLIKQRGALM--AKGWLLGIQFEV---LMKDNLFFELGAHSNKMAAILKAGLEA 286 (359)
T ss_dssp EECTTTTCSSCEEEEECSGGGCTTHHHHHHHTTCCC--TTTHHHHHHHHH---HTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecccCCCCCceEEEEEcccHHHHHHHHHhcCCccc--ccchhhHHHHHH---HHhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 99999876666 89998888877665432 22211 112222222222 233445677889999999999999954
Q ss_pred CCCccccCC-CcEEEEEeCCCccHHHHHHHHHHhC-CeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848 402 IGFPVEHTP-SHIIPIKIGNPALNTKICDMLLKEK-GHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK 479 (514)
Q Consensus 402 ~g~~~~~~~-~~~~~i~l~~~~~~~~~~~~Ll~~~-GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~ 479 (514)
.++++..+. +.++++.++ .++.+.|+ ++ ||.+.+.. +.+.+++|++++..++++++++++++|+++++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~-----~~~~~~l~-~~~gi~v~~~~----~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 356 (359)
T 1svv_A 287 CGIRLAWPSASNQLFPILE-----NTMIAELN-NDFDMYTVEPL----KDGTCIMRLCTSWATEEKECHRFVEVLKRLVA 356 (359)
T ss_dssp TTCCBSSCCSSSEECBEEE-----HHHHHHHT-TTEECEEEEEE----TTTEEEEEEECCTTCCHHHHHHHHHHHHHC--
T ss_pred CCeEEccCCccceEEEEcC-----HHHHHHHH-HhcCEEEEecc----cCCCceEEEEccCcCCHHHHHHHHHHHHHHHh
Confidence 577776444 445555543 47888896 77 99983211 23457999999888999999999999998876
Q ss_pred Hc
Q psy16848 480 SL 481 (514)
Q Consensus 480 ~~ 481 (514)
++
T Consensus 357 ~~ 358 (359)
T 1svv_A 357 ST 358 (359)
T ss_dssp --
T ss_pred cc
Confidence 53
No 151
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.94 E-value=7.1e-26 Score=233.38 Aligned_cols=332 Identities=13% Similarity=0.038 Sum_probs=220.6
Q ss_pred CceeeecccCCCCC-------ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CC--cEEEEec
Q psy16848 17 NRVTCRLSSVQYKV-------PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KE--AGLVFTS 83 (514)
Q Consensus 17 g~~~~d~~~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~--~~i~~~s 83 (514)
....+|+..+.|+. +|.+++++.++++... ...+....|..++.+++++.+....+ .+ ..+++++
T Consensus 48 ~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G 125 (420)
T 4f4e_A 48 RPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGL--PRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALG 125 (420)
T ss_dssp CSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCC--CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred CCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCC--CCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCc
Confidence 45789998775542 3689999999887621 11222334555666666666554433 23 4566777
Q ss_pred cccccccchh--hccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccC
Q psy16848 84 CYVANDSTLF--TLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG 161 (514)
Q Consensus 84 Gt~a~~~~l~--~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 161 (514)
|++|+..++. ++.. +||.|+++.++|.+....++..|.+++.++..+.+
T Consensus 126 ~t~al~~~~~~~~~~~--~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~--------------------------- 176 (420)
T 4f4e_A 126 GTGALKIGADFLRTLN--PKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAK--------------------------- 176 (420)
T ss_dssp HHHHHHHHHHHHHHHC--TTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETT---------------------------
T ss_pred cHHHHHHHHHHHHHhC--CCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccc---------------------------
Confidence 8888888743 4444 99999999999999998888888877766541000
Q ss_pred CccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec
Q psy16848 162 AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~ 241 (514)
+.
T Consensus 177 ---------------------------------~~--------------------------------------------- 178 (420)
T 4f4e_A 177 ---------------------------------TN--------------------------------------------- 178 (420)
T ss_dssp ---------------------------------TT---------------------------------------------
T ss_pred ---------------------------------cC---------------------------------------------
Confidence 00
Q ss_pred CCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC--CCCCccccCCC
Q psy16848 242 HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE--HGAGIGERDGQ 316 (514)
Q Consensus 242 ~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~--~~~~~~~~~~~ 316 (514)
..|++.+++.+++. .++++++++++++||||.+++ +++|.++|++||+++|+||+|+....+. ...++....+
T Consensus 179 ~~d~~~l~~~l~~~-~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~- 256 (420)
T 4f4e_A 179 GVNFDGMLAALNGY-EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAA- 256 (420)
T ss_dssp EECHHHHHHHHTTC-CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHH-
T ss_pred ccCHHHHHHHHHhC-CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHh-
Confidence 00455666666543 345889999999999999998 6899999999999999999998444331 1111111111
Q ss_pred ccCceEEEcCCcccccCCC---eEEEe---cHHHHHHH----HhhcCceEeccCCcHHHHHHHHHHHHHhh-----hchH
Q psy16848 317 LHNMDIISGTLGKAFGNIG---GYIVG---TKNFIDTI----RSYAAGFIFTTSLPPTVLAGAREAIRILS-----SQEG 381 (514)
Q Consensus 317 ~~~~di~~~S~sK~lg~~G---G~l~~---~~~~~~~l----~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~ 381 (514)
..+.+++++||||.+|.+| ||++. ++++++.+ ....... ..+.+...+.++...++... ..++
T Consensus 257 ~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 334 (420)
T 4f4e_A 257 ANLNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTN--YSNPPTHGGAIVAAVLASPELRASWVQEL 334 (420)
T ss_dssp TTCCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTT--TSSCCSHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cCCCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 2367899999999999767 88753 45555443 2211111 12345566666665555321 3456
Q ss_pred HHHHHHHHHHHHHHHHHHHhC----CCccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEE
Q psy16848 382 VELRAKHQDIVAYLRNELIQI----GFPVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRL 456 (514)
Q Consensus 382 ~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl 456 (514)
++++++++++++++.+.|++. ++.+..+.++ ++++.++ ...+.+.+ +++||.+.++ .|+
T Consensus 335 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~l-~~~gI~v~~~-----------~Ri 398 (420)
T 4f4e_A 335 GEMRDRIRAMRNGLVERLKAAGIERDFSFINAQRGMFSYSGLT----SAQVDRLR-EEFGIYAVST-----------GRI 398 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHSCSSEEECCCC----HHHHHHHH-HHHCEECCTT-----------SEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCceeECCCccEEEEeCCC----HHHHHHHH-HhCCEEecCC-----------CeE
Confidence 788999999999999999987 5666655555 4444432 34454445 6899998752 299
Q ss_pred EeCCCCCHHHHHHHHHHHHHHH
Q psy16848 457 APTPFHTREMIDKFVTDLLAVW 478 (514)
Q Consensus 457 ~~~~~~t~e~id~~~~~l~~~l 478 (514)
+++ ..+++++++++++|++++
T Consensus 399 s~~-~~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 399 CVA-ALNTRNLDVVANAIAAVL 419 (420)
T ss_dssp EGG-GCCTTTHHHHHHHHHHHH
T ss_pred EEe-cCCHHHHHHHHHHHHHHh
Confidence 997 457788999999999875
No 152
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.94 E-value=1.9e-25 Score=228.57 Aligned_cols=287 Identities=17% Similarity=0.188 Sum_probs=205.3
Q ss_pred cchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848 58 NSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT 137 (514)
Q Consensus 58 ~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~ 137 (514)
..+..+++++++++++|.+++++++||++|+..++.++.. +||+|+++.+.|.++...++..
T Consensus 63 ~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~~--~gd~vl~~~~~~~~~~~~~~~~---------------- 124 (398)
T 1gc0_A 63 SNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLR--PGDEVLLGNTLYGCTFAFLHHG---------------- 124 (398)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEEESSCCSHHHHHHHHT----------------
T ss_pred CChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhc--CCCEEEEeCCCchhHHHHHHHH----------------
Confidence 4578899999999999999999999999999999988865 9999999999999877544110
Q ss_pred HHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848 138 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN 217 (514)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~ 217 (514)
T Consensus 125 -------------------------------------------------------------------------------- 124 (398)
T 1gc0_A 125 -------------------------------------------------------------------------------- 124 (398)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecc
Q psy16848 218 PEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV 297 (514)
Q Consensus 218 ~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea 297 (514)
+...|.+++.++..|.+.+++.++ +++++|++++++||+|.+.++++|.++|+++|+++|+|++
T Consensus 125 ------------~~~~g~~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~ 188 (398)
T 1gc0_A 125 ------------IGEFGVKLRHVDMADLQALEAAMT----PATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNT 188 (398)
T ss_dssp ------------GGGGTCEEEEECTTCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECT
T ss_pred ------------HHHcCCEEEEECCCCHHHHHHhcC----CCCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECC
Confidence 012244455555555555555553 3589999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEecHHHHH-HHHhhcCc-eEeccCCcHHHHHHHHH
Q psy16848 298 HAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVGTKNFID-TIRSYAAG-FIFTTSLPPTVLAGARE 371 (514)
Q Consensus 298 ~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~~~~~~~-~l~~~~~~-~~~~~~~~~~~~~a~~~ 371 (514)
|+.+..+. + ...++|+++.|+||+++++ ||+++++++.++ .+...... + +.+.++..++++..
T Consensus 189 ~~~~~~~~------~---~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 257 (398)
T 1gc0_A 189 YCTPYLQR------P---LELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMT--GAVLSPHDAALLMR 257 (398)
T ss_dssp TTHHHHCC------G---GGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHT--CCCCCHHHHHHHHH
T ss_pred CcccccCC------c---hhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccC--CCCCCHHHHHHHHh
Confidence 99665421 1 1236899999999999863 489999887665 55544333 2 34577877777777
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC-C--------------cccc----CCCcEEEEEeCCCccHHHHHHHHH
Q psy16848 372 AIRILSSQEGVELRAKHQDIVAYLRNELIQIG-F--------------PVEH----TPSHIIPIKIGNPALNTKICDMLL 432 (514)
Q Consensus 372 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~--------------~~~~----~~~~~~~i~l~~~~~~~~~~~~Ll 432 (514)
+++.+ ....++..++.+.+.+.|++.. + .+.. ..++++.+.++.. .....+.+
T Consensus 258 ~l~~~-----~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~l- 329 (398)
T 1gc0_A 258 GIKTL-----NLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGG--IGAGRRFM- 329 (398)
T ss_dssp HHTTH-----HHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTH--HHHHHHHH-
T ss_pred ccchH-----HHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCC--HHHHHHHH-
Confidence 66532 3456666777777777777641 1 1111 2467888888642 23344444
Q ss_pred HhCCeEEecccC---------CC------CC--------CCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848 433 KEKGHYVQPINY---------PT------VP--------VGEEKIRLAPTPFHTREMIDKFVTDLLAV 477 (514)
Q Consensus 433 ~~~GI~v~~~~~---------~~------~~--------~~~~~iRl~~~~~~t~e~id~~~~~l~~~ 477 (514)
++.++.+...+. |. .+ ..++.+|++++..+++++++.+.++|+++
T Consensus 330 ~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 330 NALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp HHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 578887764221 11 00 12579999999999999999999988764
No 153
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.94 E-value=4e-26 Score=233.04 Aligned_cols=330 Identities=14% Similarity=0.055 Sum_probs=216.9
Q ss_pred CCceeeecccCCCCC-------ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc---C-----CCcEEE
Q psy16848 16 SNRVTCRLSSVQYKV-------PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH---Q-----KEAGLV 80 (514)
Q Consensus 16 ~g~~~~d~~~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~---~-----~~~~i~ 80 (514)
.+..++||..+.|++ +|.+.+++.++++... ..++ +......++++.+++++ + .+..++
T Consensus 24 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~y----~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~ 97 (396)
T 2q7w_A 24 ERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET--TKNY----LGIDGIPEFGRCTQELLFGKGSALINDKRART 97 (396)
T ss_dssp ----CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCC--CCCC----CCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred CCCCceecccccccCCCCCccCcHHHHHHHHhhcCccc--ccCC----CCCCCCHHHHHHHHHHHhcCCCCccccccEEE
Confidence 345689998888642 4789999988877521 1111 11222355666666665 2 345665
Q ss_pred --EeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccc
Q psy16848 81 --FTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHS 158 (514)
Q Consensus 81 --~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~ 158 (514)
+++|++|+..++..+....+||.|+++.+.|.+....++..|.+++.++....+
T Consensus 98 ~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~------------------------ 153 (396)
T 2q7w_A 98 AQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAE------------------------ 153 (396)
T ss_dssp EEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETT------------------------
T ss_pred EecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCC------------------------
Confidence 778888988887665423499999999999999988888777776655431000
Q ss_pred ccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEE
Q psy16848 159 MTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKI 238 (514)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~ 238 (514)
+.
T Consensus 154 ------------------------------------~~------------------------------------------ 155 (396)
T 2q7w_A 154 ------------------------------------NH------------------------------------------ 155 (396)
T ss_dssp ------------------------------------TT------------------------------------------
T ss_pred ------------------------------------CC------------------------------------------
Confidence 00
Q ss_pred EecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC--CCCCcccc
Q psy16848 239 IYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE--HGAGIGER 313 (514)
Q Consensus 239 ~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~--~~~~~~~~ 313 (514)
..|.+.+++.+++. .++++++++++++||||.+++ +++|.++|++||+++|+||+|+....+. .+.++...
T Consensus 156 ---~~d~~~l~~~l~~~-~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 231 (396)
T 2q7w_A 156 ---TLDFDALINSLNEA-QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAF 231 (396)
T ss_dssp ---EECHHHHHHHHTTC-CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHH
T ss_pred ---CcCHHHHHHHHHhC-CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHH
Confidence 00455555555432 134688999999999999998 6789999999999999999998433321 11111111
Q ss_pred CCCccCceEEEcCCcccccCCC---eEEEe---cH----HHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHh-----hh
Q psy16848 314 DGQLHNMDIISGTLGKAFGNIG---GYIVG---TK----NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRIL-----SS 378 (514)
Q Consensus 314 ~~~~~~~di~~~S~sK~lg~~G---G~l~~---~~----~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~-----~~ 378 (514)
.. ..+.+++++|+||.+|++| ||+++ ++ ++++.+....... ....++..+.++.++++.. ..
T Consensus 232 ~~-~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~l~~~~~ 308 (396)
T 2q7w_A 232 AA-MHKELIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRAN--YSNPPAHGASVVATILSNDALRAIWE 308 (396)
T ss_dssp HH-HCSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTT--TSSCCHHHHHHHHHHHTSHHHHHHHH
T ss_pred Hh-cCCcEEEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhc--cCCCCcHHHHHHHHHhcChhhHHHHH
Confidence 11 1246799999999999767 99886 55 3444444322111 1234777888877777532 12
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCC----CccccCCCcEE-EEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcE
Q psy16848 379 QEGVELRAKHQDIVAYLRNELIQIG----FPVEHTPSHII-PIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEK 453 (514)
Q Consensus 379 ~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~-~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~ 453 (514)
+++++.+++++++++++.+.|++.+ +.+..+.++++ ++.++ ...+.+.+ +++||.+.+ .
T Consensus 309 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l-~~~gv~v~~-----------~ 372 (396)
T 2q7w_A 309 QELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT----KEQVLRLR-EEFGVYAVA-----------S 372 (396)
T ss_dssp HHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCC----HHHHHHHH-HHHCEECCT-----------T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCCceEEEecCC----HHHHHHHH-HhcCeeecC-----------C
Confidence 4567788889999999999999986 66655555543 44332 23444444 689999874 2
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848 454 IRLAPTPFHTREMIDKFVTDLLAV 477 (514)
Q Consensus 454 iRl~~~~~~t~e~id~~~~~l~~~ 477 (514)
+|++++. .+++++++++++|+++
T Consensus 373 ~Ris~~~-~~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 373 GRVNVAG-MTPDNMAPLCEAIVAV 395 (396)
T ss_dssp CEEEGGG-CCTTTHHHHHHHHHHH
T ss_pred ceEEEee-cCHHHHHHHHHHHHhc
Confidence 6999984 4899999999999875
No 154
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.94 E-value=2.9e-26 Score=234.70 Aligned_cols=333 Identities=13% Similarity=0.010 Sum_probs=215.3
Q ss_pred ceeeecccCCCCC---Chh----HHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEE--Eecc
Q psy16848 18 RVTCRLSSVQYKV---PKG----GRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLV--FTSC 84 (514)
Q Consensus 18 ~~~~d~~~~~~~~---~~~----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~--~~sG 84 (514)
...+|+..+.|++ +|. +.+++.+.....+ ..++....|..++.+++.+.+.+..| .++.++ +++|
T Consensus 28 ~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~ 105 (401)
T 7aat_A 28 SKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKM--DKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISG 105 (401)
T ss_dssp TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTC--CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHH
T ss_pred CCceeeeeeeEECCCCCEechHHHHHHHHHhccccc--ccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcc
Confidence 3479998888753 444 5555555444211 22233334545555555555544333 445555 6778
Q ss_pred ccccccchhhccc-cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCc
Q psy16848 85 YVANDSTLFTLGK-MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAI 163 (514)
Q Consensus 85 t~a~~~~l~~l~~-~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
++++..++..+.. .+|||.|+++.++|......++..|.+++.++..+.+
T Consensus 106 ~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~----------------------------- 156 (401)
T 7aat_A 106 TGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPK----------------------------- 156 (401)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETT-----------------------------
T ss_pred hHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccc-----------------------------
Confidence 8888877766541 2499999999999999988888888777655431100
Q ss_pred cchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC
Q psy16848 164 CPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN 243 (514)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~ 243 (514)
..+ -
T Consensus 157 -------------------------------~~~---------------------------------------------~ 160 (401)
T 7aat_A 157 -------------------------------TCS---------------------------------------------L 160 (401)
T ss_dssp -------------------------------TTE---------------------------------------------E
T ss_pred -------------------------------cCc---------------------------------------------c
Confidence 000 1
Q ss_pred ChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCC---CCCccccCCCc
Q psy16848 244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEH---GAGIGERDGQL 317 (514)
Q Consensus 244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~---~~~~~~~~~~~ 317 (514)
|++.+++.+++ ..+++++++++++|||||.+++ +++|.++|++||+++|+||+|.....+.. ..++..... .
T Consensus 161 d~~~l~~~l~~-~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~-~ 238 (401)
T 7aat_A 161 DFTGAMEDISK-IPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIE-Q 238 (401)
T ss_dssp CHHHHHHHHTT-SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHH-T
T ss_pred CHHHHHHHHHh-CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHh-c
Confidence 55666677766 4567899999999999999988 78999999999999999999984433211 000100001 2
Q ss_pred cCceEEEcCCcccccCCC---eEEEe---cHH----HHHHHHhhcCceEeccCCcHHHHHHHHHHHHHh-----hhchHH
Q psy16848 318 HNMDIISGTLGKAFGNIG---GYIVG---TKN----FIDTIRSYAAGFIFTTSLPPTVLAGAREAIRIL-----SSQEGV 382 (514)
Q Consensus 318 ~~~di~~~S~sK~lg~~G---G~l~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~-----~~~~~~ 382 (514)
.+.+++++||||.+|.+| ||++. +++ +.+.+....... +.+.+...+.++...++.. ...+++
T Consensus 239 ~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 316 (401)
T 7aat_A 239 GIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPM--YSNPPMNGARIASLILNTPELRKEWLVEVK 316 (401)
T ss_dssp TCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHH--HSSCCHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CCcEEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhc--cCCCChHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 356889999999999878 98875 555 344444333222 2344555555555445311 034466
Q ss_pred HHHHHHHHHHHHHHHHHHhCC----CccccCCCcEE-EEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEE
Q psy16848 383 ELRAKHQDIVAYLRNELIQIG----FPVEHTPSHII-PIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLA 457 (514)
Q Consensus 383 ~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~-~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~ 457 (514)
+.+++++++++++.+.|++.+ +.+..+.++++ ++.++ .+....+++++||.+.+ .+|++
T Consensus 317 ~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ll~~~gi~v~~-----------~~Ris 380 (401)
T 7aat_A 317 GMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK-----PEQVERLTKEFSIYMTK-----------DGRIS 380 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCC-----HHHHHHHHHHHCEECCT-----------TCEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCceecCCcceEEecCCC-----HHHHHHHHHhCCEeccC-----------CCeEE
Confidence 788899999999999999885 55555555544 33322 34446665688999853 36999
Q ss_pred eCCCCCHHHHHHHHHHHHHHH
Q psy16848 458 PTPFHTREMIDKFVTDLLAVW 478 (514)
Q Consensus 458 ~~~~~t~e~id~~~~~l~~~l 478 (514)
++. .+++++++++++|++++
T Consensus 381 ~~~-~~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 381 VAG-VASSNVGYLAHAIHQVT 400 (401)
T ss_dssp GGG-CCTTTHHHHHHHHHHHH
T ss_pred ecc-CChhhHHHHHHHHHHHh
Confidence 984 45566999999999875
No 155
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.94 E-value=5.1e-25 Score=226.83 Aligned_cols=337 Identities=18% Similarity=0.187 Sum_probs=216.4
Q ss_pred eeec-ccCCCCCChhHHHHHHHHHH-HhCCCCCCcCcccCc--chHHHHH-HHHHHhHcCCCcEE-EEeccccccccchh
Q psy16848 20 TCRL-SSVQYKVPKGGRKCLGEALE-KFGTGAGGTRNISGN--SLFHEKL-EEDVAKLHQKEAGL-VFTSCYVANDSTLF 93 (514)
Q Consensus 20 ~~d~-~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~-~~~la~~~~~~~~i-~~~sGt~a~~~~l~ 93 (514)
.+++ .+.+++ +|++.+++.+++. .++.++.++.+..+. .+..+++ ++++++++|.+... +++||++|+..++.
T Consensus 34 ~i~l~~~~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~v~~~~Gs~a~~~al~ 112 (425)
T 3ecd_A 34 QVELIASENIV-SRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHANVQPHSGAQANGAVML 112 (425)
T ss_dssp SEECCTTCCCC-CHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHH
T ss_pred ceeeecccCCC-CHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCceeecCchHHHHHHHHH
Confidence 4555 445555 8999999999884 444333333332222 1234444 47888999988874 48999999999998
Q ss_pred hccccCCCceEEecCccchhhh-hhhh--cCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848 94 TLGKMIPGLHYISDAGNHASMI-QGIR--NSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 170 (514)
Q Consensus 94 ~l~~~~~gd~v~~~~~~h~~~~-~~~~--~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
++.. +||.|+++.++|.+.. .+.. ..+..+
T Consensus 113 ~~~~--~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~--------------------------------------------- 145 (425)
T 3ecd_A 113 ALAK--PGDTVLGMSLDAGGHLTHGAKPALSGKWF--------------------------------------------- 145 (425)
T ss_dssp HHCC--TTCEEEEECC------------------C---------------------------------------------
T ss_pred HccC--CCCEEEEcccccccceecchhhhhcccce---------------------------------------------
Confidence 8865 9999999999998732 2211 112111
Q ss_pred hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec------CCC
Q psy16848 171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR------HND 244 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~------~~d 244 (514)
++++++ ..|
T Consensus 146 -----------------------------------------------------------------~~~~~~~~~~~~~~d 160 (425)
T 3ecd_A 146 -----------------------------------------------------------------NALQYGVSRDTMLID 160 (425)
T ss_dssp -----------------------------------------------------------------EEEEECCCTTTSSCC
T ss_pred -----------------------------------------------------------------eeeecCCCcccCccC
Confidence 111222 115
Q ss_pred hhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEE
Q psy16848 245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS 324 (514)
Q Consensus 245 ~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~ 324 (514)
.+.+++.+.+. ++++|++++++| |...++++|.++|++||+++|+||+|..|.... + .........|+++
T Consensus 161 ~~~l~~~i~~~---~~~~v~~~~~~~--~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~-~----~~~~~~~~~di~~ 230 (425)
T 3ecd_A 161 YDQVEALAQQH---KPSLIIAGFSAY--PRKLDFARFRAIADSVGAKLMVDMAHIAGVIAA-G----RHANPVEHAHVVT 230 (425)
T ss_dssp HHHHHHHHHHH---CCSEEEEECSCC--CSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHT-T----SSCCGGGTCSEEE
T ss_pred HHHHHHHHhhc---CCcEEEEccccC--CCcCCHHHHHHHHHHcCCEEEEECcChHhhhhc-c----cccCchhcCcEEE
Confidence 66777776532 468999988877 467789999999999999999999987554321 1 0111112368999
Q ss_pred cCCccccc-CCCeEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848 325 GTLGKAFG-NIGGYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI 402 (514)
Q Consensus 325 ~S~sK~lg-~~GG~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 402 (514)
+|+||+++ +.||+++++ +.+.+.+........ ..+.+...++++..++......++++.+++++++.+++.+.|.+.
T Consensus 231 ~s~sK~l~g~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 309 (425)
T 3ecd_A 231 STTHKTLRGPRGGFVLTNDEEIAKKINSAVFPGL-QGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG 309 (425)
T ss_dssp EESSGGGCCCSCEEEEESCHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ecCCcccCCCCcEEEEeCCHHHHHHHHhhhCccc-cCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999994 346999887 567777765443321 223344444444555544434566788999999999999999998
Q ss_pred CCcccc--CCCcEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCC---CCCCCcEEEEEeC----CCCCHHHHHHHHH
Q psy16848 403 GFPVEH--TPSHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPT---VPVGEEKIRLAPT----PFHTREMIDKFVT 472 (514)
Q Consensus 403 g~~~~~--~~~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~---~~~~~~~iRl~~~----~~~t~e~id~~~~ 472 (514)
|+.+.. +.++++++.++. ..+...+.+.| +++||.+.++..+. .+.....+|++++ ..+++++++++++
T Consensus 310 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~ 388 (425)
T 3ecd_A 310 GVDLVTGGTDNHLLLVDLRPKGLKGAQVEQAL-ERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGR 388 (425)
T ss_dssp TCEEGGGSCSSSEEEEECGGGTCCHHHHHHHH-HHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHH
T ss_pred CCeeccCCCCceEEEEEeCCCCCCHHHHHHHH-HHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHH
Confidence 887764 345677777754 23466777777 58999998544322 1223568999944 4556999999999
Q ss_pred HHHHHHHHc
Q psy16848 473 DLLAVWKSL 481 (514)
Q Consensus 473 ~l~~~l~~~ 481 (514)
+|++++++.
T Consensus 389 ~l~~~l~~~ 397 (425)
T 3ecd_A 389 LILEVFEAL 397 (425)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 999999875
No 156
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.94 E-value=4.1e-25 Score=227.05 Aligned_cols=338 Identities=17% Similarity=0.178 Sum_probs=225.8
Q ss_pred eeeec-ccCCCCCChhHHHHHHHHHH-HhCCCCCCcCcccCc---chHHHHHHHHHHhHcCCCcE-EEEeccccccccch
Q psy16848 19 VTCRL-SSVQYKVPKGGRKCLGEALE-KFGTGAGGTRNISGN---SLFHEKLEEDVAKLHQKEAG-LVFTSCYVANDSTL 92 (514)
Q Consensus 19 ~~~d~-~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~-i~~~sGt~a~~~~l 92 (514)
..+++ .+.+|. +|++.+++.+++. .++..+.++.+..+. .++.+.+++++++++|.+.. ++++|||+|+..++
T Consensus 26 ~~i~l~~~~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~~sGt~a~~~~~ 104 (417)
T 3n0l_A 26 EGLEMIASENFT-LPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVY 104 (417)
T ss_dssp HSEECCTTCCCC-CHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHH
T ss_pred cCeeeecccCCC-CHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcceEeccHHHHHHHHH
Confidence 34665 344554 8999999998884 443333332322222 23333455588999998776 88899999999999
Q ss_pred hhccccCCCceEEecCccchhhhh---hhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848 93 FTLGKMIPGLHYISDAGNHASMIQ---GIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL 169 (514)
Q Consensus 93 ~~l~~~~~gd~v~~~~~~h~~~~~---~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
.++.+ +||.|+++.++|.+... .+...|..
T Consensus 105 ~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~~g~~--------------------------------------------- 137 (417)
T 3n0l_A 105 AALIN--PGDKILGMDLSHGGHLTHGAKVSSSGKM--------------------------------------------- 137 (417)
T ss_dssp HHHSC--TTCEEEEECC----------------CC---------------------------------------------
T ss_pred HHhcC--CCCEEEecccccccccchhhhhhhhcce---------------------------------------------
Confidence 88866 99999999999977543 11111111
Q ss_pred hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec-----CCC
Q psy16848 170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR-----HND 244 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~-----~~d 244 (514)
..+++++ ..|
T Consensus 138 -----------------------------------------------------------------~~~~~~~~~~~~~~d 152 (417)
T 3n0l_A 138 -----------------------------------------------------------------YESCFYGVELDGRID 152 (417)
T ss_dssp -----------------------------------------------------------------SEEEEECCCTTSSCC
T ss_pred -----------------------------------------------------------------eeeEeccCCCCCCcC
Confidence 1122222 136
Q ss_pred hhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEE
Q psy16848 245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS 324 (514)
Q Consensus 245 ~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~ 324 (514)
.+.+++.+.+. ++++|++++++| |...++++|.++|++||+++|+|++|+.|...... ........|+++
T Consensus 153 ~~~l~~~i~~~---~~~~v~~~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-----~~~~~~~~di~~ 222 (417)
T 3n0l_A 153 YEKVREIAKKE---KPKLIVCGASAY--ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGE-----HPSPFPYAHVVS 222 (417)
T ss_dssp HHHHHHHHHHH---CCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTS-----SCCCTTTCSEEE
T ss_pred HHHHHHHHHhc---CCeEEEECCccc--CccCCHHHHHHHHHHcCCEEEEECccchhhhhccc-----CCCccccceEEE
Confidence 67777777632 467888777765 89999999999999999999999998755431110 011112468999
Q ss_pred cCCcccccC-CCeEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848 325 GTLGKAFGN-IGGYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI 402 (514)
Q Consensus 325 ~S~sK~lg~-~GG~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 402 (514)
+|+||++++ .||+++++ +++.+.+........ ..+.+...++++..++......++++.++++.++++++.+.|++.
T Consensus 223 ~s~sK~l~g~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 301 (417)
T 3n0l_A 223 STTHKTLRGPRGGIIMTNDEELAKKINSAIFPGI-QGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR 301 (417)
T ss_dssp EESSTTTCSCSCEEEEESCHHHHHHHHHHHTTTT-CSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeCccccCCCCeeEEEECCHHHHHHHhhhhCCcc-cCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999944 46999988 788888876543321 224455666666666665444566788899999999999999998
Q ss_pred CCcccc--CCCcEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCC---CCCCcEEEEEeCC----CCCHHHHHHHHH
Q psy16848 403 GFPVEH--TPSHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTV---PVGEEKIRLAPTP----FHTREMIDKFVT 472 (514)
Q Consensus 403 g~~~~~--~~~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~---~~~~~~iRl~~~~----~~t~e~id~~~~ 472 (514)
|+.+.. ..++++++.++. ..+..++.+.| +++||.+.+...+.. +.....+|++++. ..++++++++++
T Consensus 302 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~ 380 (417)
T 3n0l_A 302 KFKLVSDGTDNHLVLMSFLDREFSGKDADLAL-GNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSN 380 (417)
T ss_dssp TCEEGGGSCSSSEEEEECTTSSSCHHHHHHHH-HHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHH
T ss_pred CceeccCCCCceEEEEEcccCCCCHHHHHHHH-HHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHH
Confidence 877654 345577777753 33566777777 589999987654332 2234679998752 367899999999
Q ss_pred HHHHHHHHc
Q psy16848 473 DLLAVWKSL 481 (514)
Q Consensus 473 ~l~~~l~~~ 481 (514)
+|++++++.
T Consensus 381 ~l~~~l~~~ 389 (417)
T 3n0l_A 381 YIADILDDV 389 (417)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcc
Confidence 999998864
No 157
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.94 E-value=1.1e-25 Score=232.37 Aligned_cols=308 Identities=10% Similarity=-0.046 Sum_probs=213.3
Q ss_pred CcchHHHHHHHHHHhHcCCC-cEEEEeccc-ccc--ccchhhccccCC----------CceEEecCccchhhhhhhhcCC
Q psy16848 57 GNSLFHEKLEEDVAKLHQKE-AGLVFTSCY-VAN--DSTLFTLGKMIP----------GLHYISDAGNHASMIQGIRNSS 122 (514)
Q Consensus 57 ~~~~~~~~~~~~la~~~~~~-~~i~~~sGt-~a~--~~~l~~l~~~~~----------gd~v~~~~~~h~~~~~~~~~~~ 122 (514)
+......++++.++++++.+ ..+++++|+ +++ ..++.++....| ||+|+++.++|......++..|
T Consensus 75 ~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g 154 (427)
T 3ppl_A 75 GGLDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFG 154 (427)
T ss_dssp CCSSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTT
T ss_pred CCCCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcC
Confidence 33344578888888888754 345555555 455 366666543114 8999999999999988888887
Q ss_pred CCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeec
Q psy16848 123 APKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERD 202 (514)
Q Consensus 123 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~ 202 (514)
.+++.++.++ .
T Consensus 155 ~~~~~v~~~~---------------------------------------------------------------~------ 165 (427)
T 3ppl_A 155 FEMISVPMNE---------------------------------------------------------------D------ 165 (427)
T ss_dssp CEEEEEEEET---------------------------------------------------------------T------
T ss_pred CEEEEeCCCC---------------------------------------------------------------C------
Confidence 7776554310 0
Q ss_pred CchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEe-cCCCCCccccCH---
Q psy16848 203 GQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFE-TVHSMTGAICPL--- 278 (514)
Q Consensus 203 G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~-~~~nptG~~~~l--- 278 (514)
..|.+.+++.++ .+++++|+++ +++||||.+++.
T Consensus 166 ---------------------------------------g~d~~~l~~~l~---~~~~~~v~~~p~~~NPtG~~~~~~~~ 203 (427)
T 3ppl_A 166 ---------------------------------------GPDMDAVEELVK---NPQVKGMWVVPVFSNPTGFTVTEDVA 203 (427)
T ss_dssp ---------------------------------------EECHHHHHHHTT---STTEEEEEECCSSCTTTCCCCCHHHH
T ss_pred ---------------------------------------CCCHHHHHHHHh---cCCCeEEEECCCCCCCCCccCCHHHH
Confidence 004455555442 2457888754 899999999995
Q ss_pred HHHHHHH-HHcCCEEEEeccccccccCCCCCCccccCCC-----ccCceEEEcCCcccccCCC---eEEEecHHHHHHHH
Q psy16848 279 KELCEVS-HQHGALTFVDEVHAVGLYGEHGAGIGERDGQ-----LHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIR 349 (514)
Q Consensus 279 ~~l~~l~-~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~-----~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~ 349 (514)
++|.++| ++||+++|+||+|+...++..+........+ ..+.+++++||||++++ | ||+++++++++.+.
T Consensus 204 ~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-G~r~G~~~~~~~l~~~~~ 282 (427)
T 3ppl_A 204 KRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLA-GAGVSFFLTSAENRKWYT 282 (427)
T ss_dssp HHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCT-TSSCEEEECCHHHHHHHH
T ss_pred HHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCc-CccEEEEEcCHHHHHHHH
Confidence 5888888 9999999999999954443322111111111 23678999999999543 5 99999999999887
Q ss_pred hhcCceEeccCCcHHHHHHHHHHHHHh--hhchHHHHHHHHHHHHHHHHHHHHhC-----CCccccC-CCcEEEEEeCCC
Q psy16848 350 SYAAGFIFTTSLPPTVLAGAREAIRIL--SSQEGVELRAKHQDIVAYLRNELIQI-----GFPVEHT-PSHIIPIKIGNP 421 (514)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~-~~~~~~i~l~~~ 421 (514)
...... +.+.+...+.++..+++.. ...++.+.++.++++++.+.+.|.+. ++.+..+ .+.++++.++..
T Consensus 283 ~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~ 360 (427)
T 3ppl_A 283 GHAGIR--GIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPG 360 (427)
T ss_dssp HHHHHH--CSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTT
T ss_pred HHhhcc--cCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcc
Confidence 765444 3366778887777777531 13456677788888888888777652 3554444 355778888764
Q ss_pred ccHHHHHHHHHHhCCeEEecccCCCC---CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 422 ALNTKICDMLLKEKGHYVQPINYPTV---PVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 422 ~~~~~~~~~Ll~~~GI~v~~~~~~~~---~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
+..++.+.| .++||.+.++..++. ....+++|++++. .+++++++++++|++++++.
T Consensus 361 -~~~~~~~~l-~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~-~~~~~i~~~~~~l~~~l~~~ 420 (427)
T 3ppl_A 361 -TASRVAELA-KEAGIALTGAGSSYPLRQDPENKNLRLAPSL-PPVEELEVAMDGVATCVLLA 420 (427)
T ss_dssp -CHHHHHHHH-HHTTEECCCTTTTSGGGCCTTSCEEEECCSS-SCHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHH-HHCCCEEecCcCcCCCCCCCCCCeEEEECCC-CCHHHHHHHHHHHHHHHHHH
Confidence 577888888 499999999443232 1357899999974 48999999999999998764
No 158
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.94 E-value=2e-25 Score=230.71 Aligned_cols=358 Identities=13% Similarity=0.109 Sum_probs=220.8
Q ss_pred CCceeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCc--ccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccc
Q psy16848 16 SNRVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRN--ISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDST 91 (514)
Q Consensus 16 ~g~~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~ 91 (514)
++..++|++++. ..+|++.+++.+++... ..+..+.+ ..+..+..+++++++++++|.+ ..+++++||+|+..+
T Consensus 17 ~~~~~Ld~~~~~-~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~ 94 (432)
T 3a9z_A 17 NRKVYMDYNATT-PLEPEVIQAVTEAMKEA-WGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLV 94 (432)
T ss_dssp -CCEECBTTTCC-CCCHHHHHHHHHHHHHC-CSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHH
T ss_pred CCcEEeeCCccC-CCCHHHHHHHHHHHHHh-cCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHH
Confidence 455677776655 44789999999998762 11111111 1123456789999999999864 456666678899888
Q ss_pred hhhccc------cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccc
Q psy16848 92 LFTLGK------MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP 165 (514)
Q Consensus 92 l~~l~~------~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
+.++.+ ..+||.|++..+.|... ..+++.+..|+
T Consensus 95 ~~~~~~~~~~~~~~~gd~vl~~~p~y~~~---------------------------------~~i~~~~~~h~------- 134 (432)
T 3a9z_A 95 IHSTVRCFHEQQTLQGRTVDQISPEEGTR---------------------------------PHFITCTVEHD------- 134 (432)
T ss_dssp HHHHHHHHHHHHHHC------------CC---------------------------------CEEEEETTCCH-------
T ss_pred HHHHHhhhhhccccCCccccccccccccC---------------------------------CeEEEecCcch-------
Confidence 887741 02788777766655321 00111100000
Q ss_pred hhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC--
Q psy16848 166 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN-- 243 (514)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~-- 243 (514)
.+ ...+.......|++++.++.+
T Consensus 135 -----------------------------------------s~--------------~~~~~~~~~~~g~~v~~v~~~~~ 159 (432)
T 3a9z_A 135 -----------------------------------------SI--------------RLPLEHLVEDQVAEVTFVPVSKV 159 (432)
T ss_dssp -----------------------------------------HH--------------HHHHHHHHHTTSCEEEEECCCTT
T ss_pred -----------------------------------------hH--------------HHHHHHHHHhcCcEEEEEecCcc
Confidence 00 000111122346666666632
Q ss_pred ChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcC----------CEEEEeccccccccCCCCCCcccc
Q psy16848 244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHG----------ALTFVDEVHAVGLYGEHGAGIGER 313 (514)
Q Consensus 244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~g----------v~li~Dea~~~g~~g~~~~~~~~~ 313 (514)
+...+.+.+++..++++++|++++++||||.++|+++|.++|+++| +++|+|++|+.+.. . + +.
T Consensus 160 ~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~---~--~-~~ 233 (432)
T 3a9z_A 160 NGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKR---R--V-DV 233 (432)
T ss_dssp TSSCCHHHHHHTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTS---C--C-CH
T ss_pred cCCcCHHHHHHhccCCceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCc---c--c-Ch
Confidence 2222334444444567899999999999999999999999999999 99999999986532 1 1 11
Q ss_pred CCCccCceEEEcCCcccccCCCeEEEecHHH-HHHHHhhcCc-----eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHH
Q psy16848 314 DGQLHNMDIISGTLGKAFGNIGGYIVGTKNF-IDTIRSYAAG-----FIFTTSLPPTVLAGAREAIRILSSQEGVELRAK 387 (514)
Q Consensus 314 ~~~~~~~di~~~S~sK~lg~~GG~l~~~~~~-~~~l~~~~~~-----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 387 (514)
. ..++|++++|+||++|+..|+++++++. ...+.....+ .....+.+...++++.++++.+. +++++++++
T Consensus 234 ~--~~~~d~~~~s~~K~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~-~~~~~~~~~ 310 (432)
T 3a9z_A 234 E--DLGVDFLTIVGHKFYGPRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVS-ENCETYEAH 310 (432)
T ss_dssp H--HHCCSEEEEEGGGTTCCSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred h--hcCCCEEEEehhHhcCCcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHH-hhHHHHHHH
Confidence 1 2357899999999988655999988765 2222211100 00012456777778888888764 467888999
Q ss_pred HHHHHHHHHHHHHhC-CCccc--cC------CCcEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCC---------
Q psy16848 388 HQDIVAYLRNELIQI-GFPVE--HT------PSHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVP--------- 448 (514)
Q Consensus 388 ~~~~~~~l~~~L~~~-g~~~~--~~------~~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~--------- 448 (514)
++++++++.+.|+++ |+.+. .+ .+.++.+.+++ ..+..++.+.+ .++.+..+..+...
T Consensus 311 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~i~~~~G~~~~~~~~~~~~~~l 387 (432)
T 3a9z_A 311 MRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQC---QTLLASVGASCHSDHEDRPSPVL 387 (432)
T ss_dssp HHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTCCHHHHHHHC---SSEECBSSCGGGGGGTTSCCHHH
T ss_pred HHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHHh---cCeEEeccccccCCCCCCccHHH
Confidence 999999999999885 55432 22 23366677764 22345555544 37777665433210
Q ss_pred ---C-----CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848 449 ---V-----GEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 449 ---~-----~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~ 482 (514)
. ..+++|++++..+|++|+++++++|++++++++
T Consensus 388 ~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~ 429 (432)
T 3a9z_A 388 LSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLE 429 (432)
T ss_dssp HHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 0 137999999988899999999999999987653
No 159
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.94 E-value=3e-25 Score=230.59 Aligned_cols=337 Identities=12% Similarity=0.038 Sum_probs=223.9
Q ss_pred CCc-eeeecccCCCCC---ChhHHHHHHHHHHHhC----CCCCCcCcccCcchHHHHHHHHHHhHc-CCC-------cEE
Q psy16848 16 SNR-VTCRLSSVQYKV---PKGGRKCLGEALEKFG----TGAGGTRNISGNSLFHEKLEEDVAKLH-QKE-------AGL 79 (514)
Q Consensus 16 ~g~-~~~d~~~~~~~~---~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~-------~~i 79 (514)
+++ ..+|+..+.|++ ++.+.+++.+++.... ....++....| ..++++.+++++ |.+ +.+
T Consensus 46 ~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G----~~~lr~~ia~~l~g~~~~~~~~~~i~ 121 (448)
T 3meb_A 46 DTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAG----FPLFLEAAQFLMFGKDSKAAQEGRIA 121 (448)
T ss_dssp CCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTC----CHHHHHHHHHHHHCTTCHHHHTTCEE
T ss_pred CCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcc----hHHHHHHHHHHhcCCCccccCcCcEE
Confidence 444 469998888864 5667777777744332 12222222233 356666666665 643 566
Q ss_pred E--Eecccccccc--chhhccccCCCceEEecCccchhhhhhhh----cCCCCeeeccCCChHHHHHHHHhcccCCCcEE
Q psy16848 80 V--FTSCYVANDS--TLFTLGKMIPGLHYISDAGNHASMIQGIR----NSSAPKIIYRHNDVNHLTQVLENMDVKIPKLV 151 (514)
Q Consensus 80 ~--~~sGt~a~~~--~l~~l~~~~~gd~v~~~~~~h~~~~~~~~----~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 151 (514)
+ +++||+|+.. .+.++.. +||+|+++.++|.+....++ ..|.+++.++..|.+
T Consensus 122 ~~~t~ggt~al~l~~~~~~~~~--~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~----------------- 182 (448)
T 3meb_A 122 SCQSLSGTGSLHIGFEFLHLWM--PKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKD----------------- 182 (448)
T ss_dssp EEEESHHHHHHHHHHHHHHHHC--TTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTT-----------------
T ss_pred EEECCcHHHHHHHHHHHHHHhC--CCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccc-----------------
Confidence 6 7778888765 4445544 99999999999999998888 888888776542100
Q ss_pred EeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHh
Q psy16848 152 AFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIR 231 (514)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~ 231 (514)
++.
T Consensus 183 ------------------------------------------~~~----------------------------------- 185 (448)
T 3meb_A 183 ------------------------------------------GEL----------------------------------- 185 (448)
T ss_dssp ------------------------------------------SCS-----------------------------------
T ss_pred ------------------------------------------cCC-----------------------------------
Confidence 000
Q ss_pred hCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC---
Q psy16848 232 NSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE--- 305 (514)
Q Consensus 232 ~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~--- 305 (514)
.-|++.+++.+++. .++++++++++++||||.+++ +++|.++|++||+++|+||+|.....+.
T Consensus 186 ----------~~d~e~l~~~l~~~-~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~ 254 (448)
T 3meb_A 186 ----------EIDFSNTKKDIQSA-PEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEA 254 (448)
T ss_dssp ----------SBCHHHHHHHHHHS-CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHH
T ss_pred ----------CcCHHHHHHHHHhC-CCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCccc
Confidence 01556666666543 234788999999999999999 6779999999999999999998433221
Q ss_pred CCCCccccCCCccCceEEEcCCcccccCCC---eEE--Ee--------c-H----HHHHHHHhhcCceEeccCCcHHHHH
Q psy16848 306 HGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYI--VG--------T-K----NFIDTIRSYAAGFIFTTSLPPTVLA 367 (514)
Q Consensus 306 ~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l--~~--------~-~----~~~~~l~~~~~~~~~~~~~~~~~~~ 367 (514)
...++..... ....++++.||||.+|.+| ||+ ++ + + ++++.+....... ..+.+...+.
T Consensus 255 ~~~~~~~~~~-~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~~ 331 (448)
T 3meb_A 255 DAFAVRMFVD-AGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKT--WSMSAIHGAY 331 (448)
T ss_dssp HTHHHHHHHH-TTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTT--TSSCCHHHHH
T ss_pred CchhHHHHhh-cCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcc--cCCccHHHHH
Confidence 0001111101 1245788999999999777 887 55 3 4 5666555433222 2245667777
Q ss_pred HHHHHHHHhh-----hchHHHHHHHHHHHHHHHHHHHHhCC---------CccccCCCcEEE-EEeCCCccHHHHHHHHH
Q psy16848 368 GAREAIRILS-----SQEGVELRAKHQDIVAYLRNELIQIG---------FPVEHTPSHIIP-IKIGNPALNTKICDMLL 432 (514)
Q Consensus 368 a~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g---------~~~~~~~~~~~~-i~l~~~~~~~~~~~~Ll 432 (514)
++..+++... .+.+++++++++++++++.+.|++.+ +.+..+.+.++. ..++ .+++..++
T Consensus 332 a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~ll 406 (448)
T 3meb_A 332 IVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLT-----PEHVDYLK 406 (448)
T ss_dssp HHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCC-----HHHHHHHH
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCC-----HHHHHHHH
Confidence 7777665321 13467788999999999999999874 334444555443 3332 46677776
Q ss_pred HhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848 433 KEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 433 ~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~ 482 (514)
+++||++.++. .|++++ ..+++++++++++|++++++++
T Consensus 407 ~~~gV~v~~G~----------gRis~a-~~~~~~i~~~~~~l~~~l~~~~ 445 (448)
T 3meb_A 407 EKWSIYLVKAG----------GRMSMC-GLTESNCDYVAEAIHDAVTKLP 445 (448)
T ss_dssp HHHCEEECSGG----------GEEEGG-GCCTTTHHHHHHHHHHHHHHSC
T ss_pred HhCCEEEeCCC----------cEEEEe-cCCHHHHHHHHHHHHHHHHhcc
Confidence 68899998754 299997 4467789999999999998764
No 160
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.94 E-value=8.8e-26 Score=224.95 Aligned_cols=280 Identities=16% Similarity=0.128 Sum_probs=198.7
Q ss_pred HHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhc
Q psy16848 64 KLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENM 143 (514)
Q Consensus 64 ~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 143 (514)
++++++++++|.++.++++||++|+..++.++.. +||.|+++.+.|.+....++.
T Consensus 2 ~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~~~--~g~~v~~~~~~~~~~~~~~~~----------------------- 56 (331)
T 1pff_A 2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLK--AGDHLISDDCLYGCTHALFEH----------------------- 56 (331)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEEESCCCHHHHHHHHT-----------------------
T ss_pred hHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC--CCCEEEEcCCCcchHHHHHHH-----------------------
Confidence 6889999999998899999999999999988865 999999999999987654321
Q ss_pred ccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeee
Q psy16848 144 DVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIH 223 (514)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~ 223 (514)
T Consensus 57 -------------------------------------------------------------------------------- 56 (331)
T 1pff_A 57 -------------------------------------------------------------------------------- 56 (331)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHH-cCCEEEEeccccccc
Q psy16848 224 ASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ-HGALTFVDEVHAVGL 302 (514)
Q Consensus 224 ~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~-~gv~li~Dea~~~g~ 302 (514)
.+...|++++.++..|.+.+++.++ +++++|++++++||+|.++|+++|.++|++ +|+++|+|++|+.+.
T Consensus 57 -----~~~~~g~~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~ 127 (331)
T 1pff_A 57 -----QLRKFGVEVDFIDMAVPGNIEKHLK----PNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPI 127 (331)
T ss_dssp -----HHHHTTCEEEEECTTSTTHHHHTCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHH
T ss_pred -----HHHhcCCEEEEeCCCCHHHHHHhhc----CCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccc
Confidence 0111233444444445555544443 458999999999999999999999999999 999999999999665
Q ss_pred cCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEecH-HHHHHHHhhcCc-eEeccCCcHHHHHHHHHHHHHh
Q psy16848 303 YGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVGTK-NFIDTIRSYAAG-FIFTTSLPPTVLAGAREAIRIL 376 (514)
Q Consensus 303 ~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~~~-~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~l~~~ 376 (514)
... +. ..++|++++|+||+++++ +|++++++ ++++.+...... + +...++..+.++...++..
T Consensus 128 ~~~------~~---~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~ 196 (331)
T 1pff_A 128 LTN------PL---DLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDIT--GAIISPHDAWLITRGTLTL 196 (331)
T ss_dssp HCC------GG---GGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCC--CCCCCHHHHHHHHHHHHHH
T ss_pred cCC------hh---hcCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhc--CCCCCHHHHHHHHcCcchH
Confidence 421 11 236899999999999753 48999998 899888876655 3 3456777776666666543
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHhC---------------CCccc----cCCCcEEEEEeCCCccHHHHHHHHHHhCCe
Q psy16848 377 SSQEGVELRAKHQDIVAYLRNELIQI---------------GFPVE----HTPSHIIPIKIGNPALNTKICDMLLKEKGH 437 (514)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~l~~~L~~~---------------g~~~~----~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI 437 (514)
. ...+...++.+.+.+.+++. ++.+. ...++++.+.++ +..++.+.| +++||
T Consensus 197 ~-----~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l-~~~gI 267 (331)
T 1pff_A 197 D-----MRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD---GLEKAKKVL-DNCHV 267 (331)
T ss_dssp H-----HHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS---SHHHHHHHH-HTCSS
T ss_pred H-----HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC---CHHHHHHHH-HhCCC
Confidence 1 23333444444555555432 11111 124568888876 355676777 58999
Q ss_pred EEeccc---------CCCC--------------CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848 438 YVQPIN---------YPTV--------------PVGEEKIRLAPTPFHTREMIDKFVTDLLAV 477 (514)
Q Consensus 438 ~v~~~~---------~~~~--------------~~~~~~iRl~~~~~~t~e~id~~~~~l~~~ 477 (514)
.+++.+ .|.. ...++.+|++++..++++++++++++|+++
T Consensus 268 ~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 268 VSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp SEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred ceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 876542 1110 112579999999999999999999998754
No 161
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.94 E-value=6.5e-25 Score=224.01 Aligned_cols=286 Identities=14% Similarity=0.152 Sum_probs=208.5
Q ss_pred cchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848 58 NSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT 137 (514)
Q Consensus 58 ~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~ 137 (514)
..+..+++++++++++|.+++++++||++|+..++.++.+ +||+|+++.+.|.++...+.
T Consensus 64 ~~~~~~~l~~~la~~~g~~~~~~~~sGt~A~~~al~~~~~--~gd~Vi~~~~~y~~~~~~~~------------------ 123 (392)
T 3qhx_A 64 GNPTRTALEAALAAVEDAAFGRAFSSGMAAADCALRAMLR--PGDHVVIPDDAYGGTFRLID------------------ 123 (392)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEEETTCCHHHHHHHH------------------
T ss_pred CChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCcchHHHHHH------------------
Confidence 3577899999999999999999999999999999988865 99999999999988764431
Q ss_pred HHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848 138 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN 217 (514)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~ 217 (514)
T Consensus 124 -------------------------------------------------------------------------------- 123 (392)
T 3qhx_A 124 -------------------------------------------------------------------------------- 123 (392)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecc
Q psy16848 218 PEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV 297 (514)
Q Consensus 218 ~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea 297 (514)
..+...|.++++++.+|.+.+++.++ +++++|++++++||+|.+.|+++|.++|++||+++|+|++
T Consensus 124 ----------~~~~~~g~~~~~v~~~d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~ 189 (392)
T 3qhx_A 124 ----------KVFTGWNVEYTPVALADLDAVRAAIR----PTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNT 189 (392)
T ss_dssp ----------HTGGGGTCEEEEECTTCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECT
T ss_pred ----------HHHHhcCcEEEEeCCCCHHHHHHhhC----CCCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECC
Confidence 01122344555566556666555553 4689999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHH
Q psy16848 298 HAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREA 372 (514)
Q Consensus 298 ~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~ 372 (514)
|+.+... .. ...++|+++.|+||++++. ||+++.+ +++.+.+......+ +...++..++++...
T Consensus 190 ~~~~~~~-------~~--~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~--g~~~~~~~~~~~~~~ 258 (392)
T 3qhx_A 190 FASPALQ-------QP--LSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGA--GAVPGPFDAYLTMRG 258 (392)
T ss_dssp TTCTTTC-------CG--GGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHH--CCCCCHHHHHHHHHH
T ss_pred CcccccC-------Ch--HHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhc--CCCCCHHHHHHHHhh
Confidence 9854321 11 1347899999999999874 4888887 68888777655443 446677777776666
Q ss_pred HHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc------------------cCCCcEEEEEeCCC-ccHHHHHHHHH
Q psy16848 373 IRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE------------------HTPSHIIPIKIGNP-ALNTKICDMLL 432 (514)
Q Consensus 373 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~------------------~~~~~~~~i~l~~~-~~~~~~~~~Ll 432 (514)
++.+ ....++..++.+++.+.|++. ++..+ ...++++.+.++.. .....+.+.|
T Consensus 259 l~~l-----~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l- 332 (392)
T 3qhx_A 259 LKTL-----VLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKT- 332 (392)
T ss_dssp HTTH-----HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHC-
T ss_pred hhHH-----HHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhC-
Confidence 6532 345667778888888888875 22111 11256889998763 4566777777
Q ss_pred HhCCeEEecccCCCC-----------------CCCCcEEEEEeCCCCCHHHHHHHHHHH
Q psy16848 433 KEKGHYVQPINYPTV-----------------PVGEEKIRLAPTPFHTREMIDKFVTDL 474 (514)
Q Consensus 433 ~~~GI~v~~~~~~~~-----------------~~~~~~iRl~~~~~~t~e~id~~~~~l 474 (514)
+..++.++.+..+.. ...++.+|+|++...++++++.+.++|
T Consensus 333 ~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 333 NIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp SSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred CCceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 477777765543210 023678999999877777777776655
No 162
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.94 E-value=5.3e-25 Score=225.89 Aligned_cols=285 Identities=13% Similarity=0.115 Sum_probs=202.3
Q ss_pred cchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848 58 NSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT 137 (514)
Q Consensus 58 ~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~ 137 (514)
..+..+++++++++++|.+++++++||++|+..++.++.+ +||+|+++.+.|.+....++.
T Consensus 79 ~~p~~~~l~~~la~~~g~~~~~~~~sG~~Ai~~al~~l~~--~Gd~Vi~~~~~y~~~~~~~~~----------------- 139 (414)
T 3ndn_A 79 GNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLGALLG--AGDRLVAARSLFGSCFVVCSE----------------- 139 (414)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCC--TTCEEEEESCCCHHHHHHHHT-----------------
T ss_pred CChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEcCCccchHHHHHHH-----------------
Confidence 4578899999999999999999999999999999988866 999999999999887644322
Q ss_pred HHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848 138 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN 217 (514)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~ 217 (514)
T Consensus 140 -------------------------------------------------------------------------------- 139 (414)
T 3ndn_A 140 -------------------------------------------------------------------------------- 139 (414)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecc
Q psy16848 218 PEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV 297 (514)
Q Consensus 218 ~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea 297 (514)
.+...|.++++++.+|.+.+++.++ +++++|++++++||+|.+.++++|.++|+++|+++|+|++
T Consensus 140 -----------~~~~~g~~~~~v~~~d~~~l~~ai~----~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~ 204 (414)
T 3ndn_A 140 -----------ILPRWGVQTVFVDGDDLSQWERALS----VPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNV 204 (414)
T ss_dssp -----------HHHHTTCEEEEECTTCHHHHHHHTS----SCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECT
T ss_pred -----------HHHHcCcEEEEeCCCCHHHHHHhcC----CCCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECC
Confidence 1122455566666556666655553 4588999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHHHH-HHHhhcCceEeccCCcHHHHHHHHHH
Q psy16848 298 HAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNFID-TIRSYAAGFIFTTSLPPTVLAGAREA 372 (514)
Q Consensus 298 ~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~a~~~~ 372 (514)
|+.+.... ....+.|+++.|+||++++.| |+++++++.+. .+......+ +...++..++++...
T Consensus 205 ~~~~~~~~---------~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~--g~~~~~~~a~~~~~~ 273 (414)
T 3ndn_A 205 FATPLLQQ---------GFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHT--GPAMSAFNAWVLLKG 273 (414)
T ss_dssp TTHHHHCC---------CGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHH--CCCCCHHHHHHHHHH
T ss_pred CcccccCC---------chhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHH
Confidence 98554311 113367999999999998744 89999887765 555433333 334566665555444
Q ss_pred HHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc------------------cCCCcEEEEEeCC-----CccHHHHH
Q psy16848 373 IRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE------------------HTPSHIIPIKIGN-----PALNTKIC 428 (514)
Q Consensus 373 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~------------------~~~~~~~~i~l~~-----~~~~~~~~ 428 (514)
++ .+....++..++++++.+.|++. ++..+ ...+.++++.++. ......+.
T Consensus 274 l~-----~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~ 348 (414)
T 3ndn_A 274 LE-----TLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVL 348 (414)
T ss_dssp GG-----GHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHH
Confidence 43 33456677788888888888876 32211 1135689999965 33466777
Q ss_pred HHHHHhCCeEEecccCCCC--------------------CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848 429 DMLLKEKGHYVQPINYPTV--------------------PVGEEKIRLAPTPFHTREMIDKFVTDLLAV 477 (514)
Q Consensus 429 ~~Ll~~~GI~v~~~~~~~~--------------------~~~~~~iRl~~~~~~t~e~id~~~~~l~~~ 477 (514)
+.| +..++.++.|..+.. ...++++|++++.. +++.+++.|+++
T Consensus 349 ~~l-~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~e----~~~dli~dl~~a 412 (414)
T 3ndn_A 349 DKM-RLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGLE----DTDDLIADIDRA 412 (414)
T ss_dssp HHC-SSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCSS----CHHHHHHHHHHH
T ss_pred HhC-ccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCcC----CHHHHHHHHHHh
Confidence 777 467777665543221 12467999999954 444555555544
No 163
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.94 E-value=1.2e-25 Score=230.84 Aligned_cols=329 Identities=12% Similarity=0.053 Sum_probs=217.0
Q ss_pred CCceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-CCC-------cE--EEEe
Q psy16848 16 SNRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-QKE-------AG--LVFT 82 (514)
Q Consensus 16 ~g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~-------~~--i~~~ 82 (514)
....++||..++|++ +|.+.+++.++.. ....++ +......++++.+++++ +.+ .. ..+.
T Consensus 39 ~~~~~i~l~~g~~~d~~~~~~v~~a~~~a~~---~~~~~y----~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~ 111 (409)
T 4eu1_A 39 PAKRKVNLSIGVYRDDADQPFVLECVKQATL---GTNMDY----APVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTL 111 (409)
T ss_dssp CCSSCEECCCSSCCCTTSCCCCCHHHHTCCC---CSCCCC----CCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEES
T ss_pred CCcCceeeeeeEEECCCCCEeecHHHHhcCc---cccccC----CCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecc
Confidence 345689999888753 6788888877611 111111 11222356666777664 432 23 2356
Q ss_pred ccccccccc---hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccc
Q psy16848 83 SCYVANDST---LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159 (514)
Q Consensus 83 sGt~a~~~~---l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~ 159 (514)
+|+.++..+ +.++. .+||.|+++.+.|.+....++..|.+++.++..+.+
T Consensus 112 ~g~ga~~~~~~~~~~~~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~------------------------- 164 (409)
T 4eu1_A 112 GGTGALRIGGDLLNRFV--ANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPA------------------------- 164 (409)
T ss_dssp HHHHHHHHHHHHGGGTS--SSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETT-------------------------
T ss_pred cchHHHHHHHHHHHHhc--CCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCc-------------------------
Confidence 677776543 33443 489999999999999998888888887766531000
Q ss_pred cCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEE
Q psy16848 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKII 239 (514)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~ 239 (514)
+.
T Consensus 165 -----------------------------------~~------------------------------------------- 166 (409)
T 4eu1_A 165 -----------------------------------TK------------------------------------------- 166 (409)
T ss_dssp -----------------------------------TT-------------------------------------------
T ss_pred -----------------------------------CC-------------------------------------------
Confidence 00
Q ss_pred ecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC---CCCCcccc
Q psy16848 240 YRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE---HGAGIGER 313 (514)
Q Consensus 240 v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~---~~~~~~~~ 313 (514)
..|++.+++.+++. .++++++++++|+||||.+++ +++|.++|++||+++|+||+|+.+..+. .+.++...
T Consensus 167 --~~d~~~l~~~l~~~-~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~ 243 (409)
T 4eu1_A 167 --GLNLAGMLECLDKA-PEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHL 243 (409)
T ss_dssp --EECHHHHHHHHHHS-CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHH
T ss_pred --cCcHHHHHHHHHhC-CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHH
Confidence 01455666666542 124677888999999999999 6679999999999999999998443332 11112111
Q ss_pred CCCccCceEEEcCCcccccCCC---eEE---EecHH----HHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhh-----h
Q psy16848 314 DGQLHNMDIISGTLGKAFGNIG---GYI---VGTKN----FIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS-----S 378 (514)
Q Consensus 314 ~~~~~~~di~~~S~sK~lg~~G---G~l---~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~ 378 (514)
.+ ..+.+++++||||.+|.+| ||+ +.+++ +++.+....... ..+.+...+.++..+++... .
T Consensus 244 ~~-~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (409)
T 4eu1_A 244 VD-MVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPM--YNNPPLYGAWVVSSILKDPQLTALWK 320 (409)
T ss_dssp HT-TSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHH--HSSCCHHHHHHHHHHHHCHHHHHHHH
T ss_pred Hh-hCCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhh--cCCCChHHHHHHHHHhCCHHHHHHHH
Confidence 11 1245688999999999768 995 55667 555555443222 33556778877777776321 2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCC----CccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEE
Q psy16848 379 QEGVELRAKHQDIVAYLRNELIQIG----FPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKI 454 (514)
Q Consensus 379 ~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~i 454 (514)
..+++.+++++++++++.+.|++.| +.+..+.++++.+ ++- ..+++..+++++||.+.++ .
T Consensus 321 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~-~~~---~~~~~~~ll~~~gv~v~p~-----------~ 385 (409)
T 4eu1_A 321 KELKQMSSRIAEVRKRLVSELKACGSVHDWSHIERQVGMMAY-TGL---TREQVELLRSEYHIYMTLN-----------G 385 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHSCSSEEE-CCC---CHHHHHHHHHHHCEECCTT-----------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCceEEEE-eCC---CHHHHHHHHHcCCEEEcCC-----------C
Confidence 3467788999999999999999986 5665566654433 221 1355677766789998752 3
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848 455 RLAPTPFHTREMIDKFVTDLLAVW 478 (514)
Q Consensus 455 Rl~~~~~~t~e~id~~~~~l~~~l 478 (514)
|++++ ..+++++++++++|++++
T Consensus 386 Ri~~~-~~~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 386 RAAVS-GLNSTNVEYVSQAIHNVT 408 (409)
T ss_dssp EEEGG-GCCTTTHHHHHHHHHHHH
T ss_pred EEEEE-ecCHhhHHHHHHHHHHHh
Confidence 88887 456778999999998875
No 164
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.94 E-value=1.3e-25 Score=229.44 Aligned_cols=333 Identities=12% Similarity=0.024 Sum_probs=215.6
Q ss_pred CceeeecccCCCCC-------ChhHHHHHHH-HHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CC--cEEEEe
Q psy16848 17 NRVTCRLSSVQYKV-------PKGGRKCLGE-ALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KE--AGLVFT 82 (514)
Q Consensus 17 g~~~~d~~~~~~~~-------~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~--~~i~~~ 82 (514)
...++|+..+.|++ +|.+.+++.+ ++...+. .++....|..++.+++++.+.+..+ .+ ..++++
T Consensus 25 ~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~--~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~ 102 (397)
T 3fsl_A 25 RSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGA--SLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTL 102 (397)
T ss_dssp CSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCC--CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEES
T ss_pred CCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCcccc--ccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcC
Confidence 35689998775542 2688888888 7764221 1222233445555555555544333 23 456667
Q ss_pred ccccccccchh--hccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc
Q psy16848 83 SCYVANDSTLF--TLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT 160 (514)
Q Consensus 83 sGt~a~~~~l~--~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 160 (514)
||++++..++. ++.. +||.|+++.+.|.+....++..|.+++.++..+.+
T Consensus 103 g~~~a~~~~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~-------------------------- 154 (397)
T 3fsl_A 103 GGSGALKVGADFLKRYF--PESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEA-------------------------- 154 (397)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETT--------------------------
T ss_pred CcHHHHHHHHHHHHhcC--CCCeEEEeCCCchhHHHHHHHcCCceEEEeeeecc--------------------------
Confidence 77888887743 3444 99999999999999998888888887766541000
Q ss_pred CCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEe
Q psy16848 161 GAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIY 240 (514)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v 240 (514)
+.
T Consensus 155 ----------------------------------~~-------------------------------------------- 156 (397)
T 3fsl_A 155 ----------------------------------TN-------------------------------------------- 156 (397)
T ss_dssp ----------------------------------TT--------------------------------------------
T ss_pred ----------------------------------CC--------------------------------------------
Confidence 00
Q ss_pred cCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC--CCCCccccCC
Q psy16848 241 RHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE--HGAGIGERDG 315 (514)
Q Consensus 241 ~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~--~~~~~~~~~~ 315 (514)
.-|.+.+++.+++. .++++++++++++||||.+++ +++|.++|++||+++|+||+|+.+..+. ...++.....
T Consensus 157 -~~d~~~l~~~l~~~-~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 234 (397)
T 3fsl_A 157 -GVRFNDLLATLKTL-QAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIAS 234 (397)
T ss_dssp -EECHHHHHHHHTTC-CTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHH
T ss_pred -cCcHHHHHHHHHhC-CCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHh
Confidence 00455555555543 245789999999999999988 6799999999999999999998554431 1111111111
Q ss_pred CccCceEEEcCCcccccCCC---eEEEe---cHHHHHHHHhhcCce-Ee-ccCCcHHHHHHHHHHHHHh-----hhchHH
Q psy16848 316 QLHNMDIISGTLGKAFGNIG---GYIVG---TKNFIDTIRSYAAGF-IF-TTSLPPTVLAGAREAIRIL-----SSQEGV 382 (514)
Q Consensus 316 ~~~~~di~~~S~sK~lg~~G---G~l~~---~~~~~~~l~~~~~~~-~~-~~~~~~~~~~a~~~~l~~~-----~~~~~~ 382 (514)
..+.+++++|+||.+|.+| ||++. ++++++.+....... .. ....+...+.++...++.. ...+++
T Consensus 235 -~~~~~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 313 (397)
T 3fsl_A 235 -AGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVE 313 (397)
T ss_dssp -TTCCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred -cCCCEEEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 2357899999999999767 98864 455555433221100 00 1133555555555555421 134567
Q ss_pred HHHHHHHHHHHHHHHHHHhC----CCccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEE
Q psy16848 383 ELRAKHQDIVAYLRNELIQI----GFPVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLA 457 (514)
Q Consensus 383 ~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~ 457 (514)
+.+++++++++++.+.|++. ++.+..+.++ ++++.++ ...+.+.+ +++||.+.++. |++
T Consensus 314 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l-~~~gi~v~~g~-----------Ris 377 (397)
T 3fsl_A 314 EMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLS----AAQVDRLR-EEFGVYLIASG-----------RMC 377 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTSCCTHHHHCCSSEEECCCC----HHHHHHHH-HTTCEECCTTC-----------EEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCceeecCCceEEEecCCC----HHHHHHHH-HhCCEEECCCC-----------eEE
Confidence 88899999999999999987 5766655544 4444442 34454555 69999997542 899
Q ss_pred eCCCCCHHHHHHHHHHHHHH
Q psy16848 458 PTPFHTREMIDKFVTDLLAV 477 (514)
Q Consensus 458 ~~~~~t~e~id~~~~~l~~~ 477 (514)
++ ..+++++++++++|+++
T Consensus 378 ~~-~~~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 378 VA-GLNTANVQRVAKAFAAV 396 (397)
T ss_dssp GG-GCCTTTHHHHHHHHHHH
T ss_pred EE-ecCHhhHHHHHHHHHhh
Confidence 97 44678899999999875
No 165
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.94 E-value=5.1e-26 Score=232.17 Aligned_cols=330 Identities=15% Similarity=0.077 Sum_probs=220.2
Q ss_pred CCceeeecccCCCC-------CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-CC----CcEEE--E
Q psy16848 16 SNRVTCRLSSVQYK-------VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-QK----EAGLV--F 81 (514)
Q Consensus 16 ~g~~~~d~~~~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~----~~~i~--~ 81 (514)
.+..++||..+.|+ .+|.+.+++.++++. + ...++ +......++++.+++++ +. ++.++ +
T Consensus 24 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~-~~~~y----~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~ 97 (394)
T 2ay1_A 24 PRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLET-E-TTKTY----AGLSGEPEFQKAMGELILGDGLKSETTATLAT 97 (394)
T ss_dssp CCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHH-C-CCCCC----CCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEE
T ss_pred CCccccccccceeeCCCCCccCcHHHHHHHHHhcCC-c-ccCCC----CCCCCcHHHHHHHHHHHhCCCCCcccEEEEec
Confidence 45678999888763 258899999888765 1 11111 11222356667777765 32 45666 7
Q ss_pred eccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccC
Q psy16848 82 TSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG 161 (514)
Q Consensus 82 ~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 161 (514)
+||++|+..++..+....+||.|+++.++|.+....++..|.+++.++....+
T Consensus 98 ~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~--------------------------- 150 (394)
T 2ay1_A 98 VGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAE--------------------------- 150 (394)
T ss_dssp EHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETT---------------------------
T ss_pred CCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEeccccc---------------------------
Confidence 88899998888766433489999999999999988887777776655431000
Q ss_pred CccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec
Q psy16848 162 AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~ 241 (514)
+.
T Consensus 151 ---------------------------------~~--------------------------------------------- 152 (394)
T 2ay1_A 151 ---------------------------------TR--------------------------------------------- 152 (394)
T ss_dssp ---------------------------------TT---------------------------------------------
T ss_pred ---------------------------------CC---------------------------------------------
Confidence 00
Q ss_pred CCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC--CCCCccccCCC
Q psy16848 242 HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE--HGAGIGERDGQ 316 (514)
Q Consensus 242 ~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~--~~~~~~~~~~~ 316 (514)
..|.+.+++.+++. .++++++++++++||||.+++ +++|.++|++||+++|+||+|+.+..+. ...++.....
T Consensus 153 ~~d~~~l~~~l~~~-~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~- 230 (394)
T 2ay1_A 153 GVDFEGMKADLAAA-KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIAS- 230 (394)
T ss_dssp EECHHHHHHHHHTC-CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHH-
T ss_pred ccCHHHHHHHHHhC-CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhh-
Confidence 00455566666543 234678889999999999998 6789999999999999999999433221 0001111111
Q ss_pred ccCceEEEcCCcccccCCC---eEEEe---cHHHHHHHHh----hcCceEeccCCcHHHHHHHHHHHHHh-----hhchH
Q psy16848 317 LHNMDIISGTLGKAFGNIG---GYIVG---TKNFIDTIRS----YAAGFIFTTSLPPTVLAGAREAIRIL-----SSQEG 381 (514)
Q Consensus 317 ~~~~di~~~S~sK~lg~~G---G~l~~---~~~~~~~l~~----~~~~~~~~~~~~~~~~~a~~~~l~~~-----~~~~~ 381 (514)
..+.+++++|+||.+|.+| ||+++ ++++++.+.. ..... ....++..++++.++++.. ..++.
T Consensus 231 ~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~l~~~~~~~~ 308 (394)
T 2ay1_A 231 RIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQT--YSFPPFHGAKIVSTVLTTPELRADWMAEL 308 (394)
T ss_dssp HCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTT--TSSCCCHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred cCCCEEEEEeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhh--cCCCChHHHHHHHHHhcChHHHHHHHHHH
Confidence 1234688999999999667 99987 6665443322 11111 1134677777777777633 12456
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC----CccccCC-CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEE
Q psy16848 382 VELRAKHQDIVAYLRNELIQIG----FPVEHTP-SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRL 456 (514)
Q Consensus 382 ~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~-~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl 456 (514)
++++++++++++++.+.|++.+ +.+..+. +.++++.++ ...+.+.+ +++||.+.+ .+|+
T Consensus 309 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~l-~~~gi~v~~-----------~~Ri 372 (394)
T 2ay1_A 309 EAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGAT----PEQVKRIK-EEFGIYMVG-----------DSRI 372 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCC----HHHHHHHH-HHHCEECCT-----------TCEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcCCceEEEeeCCC----HHHHHHHH-HhCCEEecC-----------CCeE
Confidence 7788999999999999998874 6655555 445555443 24454555 589999874 2699
Q ss_pred EeCCCCCHHHHHHHHHHHHHH
Q psy16848 457 APTPFHTREMIDKFVTDLLAV 477 (514)
Q Consensus 457 ~~~~~~t~e~id~~~~~l~~~ 477 (514)
+++ .++++++++++++|+++
T Consensus 373 s~~-~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 373 NIA-GLNDNTIPILARAIIEV 392 (394)
T ss_dssp EGG-GCCTTTHHHHHHHHHHH
T ss_pred Eee-cCCHhhHHHHHHHHHHc
Confidence 998 57899999999999875
No 166
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.94 E-value=5.4e-25 Score=228.62 Aligned_cols=336 Identities=20% Similarity=0.249 Sum_probs=226.2
Q ss_pred eeec-ccCCCCCChhHHHHHHHHHH-HhCCCCCCcCcccCcchHH--HHHH-HHHHhHcCCCcEEE-Eeccccccccchh
Q psy16848 20 TCRL-SSVQYKVPKGGRKCLGEALE-KFGTGAGGTRNISGNSLFH--EKLE-EDVAKLHQKEAGLV-FTSCYVANDSTLF 93 (514)
Q Consensus 20 ~~d~-~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~-~~la~~~~~~~~i~-~~sGt~a~~~~l~ 93 (514)
.+++ .+.++. +|++.+++.+++. .|+.+++++++..|..... ++++ +++++++|.+...+ ++||++|+..++.
T Consensus 47 ~i~l~~~~~~~-~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~~v~~~sGs~a~~~a~~ 125 (447)
T 3h7f_A 47 TLEMIASENFV-PRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFANVQPHSGAQANAAVLH 125 (447)
T ss_dssp SEECCTTCCCC-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHH
T ss_pred ceeEecCCCCC-CHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHH
Confidence 4555 344454 8999999998885 5544444444444443332 4555 89999999988777 8999999999998
Q ss_pred hccccCCCceEEecCccchhhh-hhh--hcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848 94 TLGKMIPGLHYISDAGNHASMI-QGI--RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 170 (514)
Q Consensus 94 ~l~~~~~gd~v~~~~~~h~~~~-~~~--~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
++.+ +||+|++..++|.+.. .+. ...|..
T Consensus 126 ~~~~--~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~---------------------------------------------- 157 (447)
T 3h7f_A 126 ALMS--PGERLLGLDLANGGHLTHGMRLNFSGKL---------------------------------------------- 157 (447)
T ss_dssp HHCC--TTCEEEEECGGGTCCGGGTCTTSHHHHS----------------------------------------------
T ss_pred HhcC--CCCEEEecCcccccccchhhhhhhcCCe----------------------------------------------
Confidence 8876 9999999999987732 211 111110
Q ss_pred hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec------CCC
Q psy16848 171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR------HND 244 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~------~~d 244 (514)
.++++++ ..|
T Consensus 158 ----------------------------------------------------------------~~~~~~~~~~~~~~~d 173 (447)
T 3h7f_A 158 ----------------------------------------------------------------YENGFYGVDPATHLID 173 (447)
T ss_dssp ----------------------------------------------------------------SEEEEECCCTTTCSCC
T ss_pred ----------------------------------------------------------------eEEEEcCcCcccCCcC
Confidence 0111111 126
Q ss_pred hhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEE
Q psy16848 245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS 324 (514)
Q Consensus 245 ~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~ 324 (514)
++.+++.+++. +++++++++++||++. ++++|+++|++||+++|+||+|..|.... + . ........|+++
T Consensus 174 ~~~l~~~i~~~---~~~~i~~~~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~-g--~--~~~~~~~~di~~ 243 (447)
T 3h7f_A 174 MDAVRATALEF---RPKVIIAGWSAYPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVAA-G--L--HPSPVPHADVVS 243 (447)
T ss_dssp HHHHHHHHHHH---CCSEEEEECSSCCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHT-T--S--SCCSTTTCSEEE
T ss_pred HHHHHHHHHhc---CCeEEEEcCCCCCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhcC-C--C--CCCCCCCCcEEE
Confidence 67777777542 3678888888888776 89999999999999999999987553211 1 0 011112568999
Q ss_pred cCCccccc-CCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-
Q psy16848 325 GTLGKAFG-NIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI- 402 (514)
Q Consensus 325 ~S~sK~lg-~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 402 (514)
+|+||+++ +.||++++++++.+.+......+.++ +.+...++++..++.....+++++.++++.++++++.+.|++.
T Consensus 244 ~s~sK~l~G~~gG~i~~~~~~~~~l~~~~~~~~~~-~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 322 (447)
T 3h7f_A 244 TTVHKTLGGGRSGLIVGKQQYAKAINSAVFPGQQG-GPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPD 322 (447)
T ss_dssp EESSGGGCCCSCEEEEECGGGHHHHHHHHTTTTCS-SCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHH
T ss_pred ecCCcCCCCCCeEEEEECHHHHHHHhhhcCCcccC-CccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999996 45699999999888887654443222 2334445555566665544466788999999999999999887
Q ss_pred ----CCcccc--CCCcEEEEEeCCC-ccHHHHHHHHHHhCCeEEe----cccCCCCCCCCcEEEEEeCCC----CCHHHH
Q psy16848 403 ----GFPVEH--TPSHIIPIKIGNP-ALNTKICDMLLKEKGHYVQ----PINYPTVPVGEEKIRLAPTPF----HTREMI 467 (514)
Q Consensus 403 ----g~~~~~--~~~~~~~i~l~~~-~~~~~~~~~Ll~~~GI~v~----~~~~~~~~~~~~~iRl~~~~~----~t~e~i 467 (514)
|+++.. +.++++++.+... .....+.+.| +++||.+. ++.. ..+...+.+|++++.. .+++|+
T Consensus 323 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~GI~v~~~~i~~~~-~~p~~~~~lRig~~~~~~~~~~~eei 400 (447)
T 3h7f_A 323 VAKAGVSVVSGGTDVHLVLVDLRDSPLDGQAAEDLL-HEVGITVNRNAVPNDP-RPPMVTSGLRIGTPALATRGFGDTEF 400 (447)
T ss_dssp HHHTTCEEGGGSCSSSEEEEECTTSSCCHHHHHHHH-HHTTEECBC--------------CEEEEECHHHHHHTCCHHHH
T ss_pred ccCCCeEEecCCCCCCEEEEEcCCCCCCHHHHHHHH-HHCCeEEecccCCCCC-CCCCCCCceeccCHHHhhCCCCHHHH
Confidence 887754 3556777776543 2344555555 68899998 4421 1123356899987542 679999
Q ss_pred HHHHHHHHHHHHHc
Q psy16848 468 DKFVTDLLAVWKSL 481 (514)
Q Consensus 468 d~~~~~l~~~l~~~ 481 (514)
++++++|++++.+.
T Consensus 401 ~~~~~~l~~~l~~~ 414 (447)
T 3h7f_A 401 TEVADIIATALATG 414 (447)
T ss_dssp HHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998765
No 167
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.93 E-value=4.2e-25 Score=229.74 Aligned_cols=336 Identities=16% Similarity=0.149 Sum_probs=214.8
Q ss_pred ccCCCCCChhHHHHHHHHHH-HhCCCCCCcCcccCcc---hHHHHHHHHHHhHcCCCc----E-EEEeccccccccchhh
Q psy16848 24 SSVQYKVPKGGRKCLGEALE-KFGTGAGGTRNISGNS---LFHEKLEEDVAKLHQKEA----G-LVFTSCYVANDSTLFT 94 (514)
Q Consensus 24 ~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~la~~~~~~~----~-i~~~sGt~a~~~~l~~ 94 (514)
+|.+| .+|+|.+++.+.+. +|+.+++++++..|.. .+.+.+++++++++|.+. + ++++|||+||..++.+
T Consensus 61 as~n~-~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~a 139 (490)
T 2a7v_A 61 ASENF-CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTA 139 (490)
T ss_dssp TTCCC-CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHH
T ss_pred CCCCC-CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHH
Confidence 56666 47999999988874 5666666666666542 333344599999999886 4 4456999999999999
Q ss_pred ccccCCCceEEecCccchhhhh--------hhhcCCCC--eeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCcc
Q psy16848 95 LGKMIPGLHYISDAGNHASMIQ--------GIRNSSAP--KIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC 164 (514)
Q Consensus 95 l~~~~~gd~v~~~~~~h~~~~~--------~~~~~~~~--~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
+.+ |||+|+++.+.|.+.+. .+...|.. ++.++.+
T Consensus 140 l~~--pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd--------------------------------- 184 (490)
T 2a7v_A 140 LLQ--PHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLN--------------------------------- 184 (490)
T ss_dssp HCC--SCEECCC-------------------------------CCBC---------------------------------
T ss_pred HcC--CCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccc---------------------------------
Confidence 976 99999999998876432 11122211 1111000
Q ss_pred chhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCC
Q psy16848 165 PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHND 244 (514)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d 244 (514)
+ ..| ..|
T Consensus 185 -------------------~----------~~~--------------------------------------------~iD 191 (490)
T 2a7v_A 185 -------------------P----------KTG--------------------------------------------LID 191 (490)
T ss_dssp -------------------T----------TTC--------------------------------------------SBC
T ss_pred -------------------c----------ccC--------------------------------------------CcC
Confidence 0 000 126
Q ss_pred hhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEE
Q psy16848 245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS 324 (514)
Q Consensus 245 ~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~ 324 (514)
++.+++.+.+. ++++|+++.++|| ...|+++|.++|++||+++++|++|..|...... ...+. ...|+++
T Consensus 192 ~d~le~~l~~~---~~klIi~~~s~~~--~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~-~~~~~----~~aDiv~ 261 (490)
T 2a7v_A 192 YNQLALTARLF---RPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKV-IPSPF----KHADIVT 261 (490)
T ss_dssp HHHHHHHHHHH---CCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTS-SCCGG----GTCSEEE
T ss_pred HHHHHHHHhhc---CCcEEEEcCCCCC--CcccHHHHHHHHHHcCCEEEEccccccccccCCc-CCCCC----CCCCEEE
Confidence 77777777643 3678888777765 4678999999999999999999999866432110 00111 2579999
Q ss_pred cCCcccc-cCCCeEEEecHH---------------HHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHH
Q psy16848 325 GTLGKAF-GNIGGYIVGTKN---------------FIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKH 388 (514)
Q Consensus 325 ~S~sK~l-g~~GG~l~~~~~---------------~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 388 (514)
+|+||++ |+.||+++++++ +.+.++....... ..+.+...+++...++.....+..++..+++
T Consensus 262 ~S~hK~l~Gp~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~-qggp~~~~iaAla~Al~~~~~~~~~~~~~~~ 340 (490)
T 2a7v_A 262 TTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSL-QGGPHNHAIAAVAVALKQACTPMFREYSLQV 340 (490)
T ss_dssp EESSGGGCSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTT-CCSCCHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred ECCcccCccccchheeeccchhcccccccchhhHHHHHHHHHHhcccC-CCCchHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999 556799988763 5566654433321 1234455556666666655444557788999
Q ss_pred HHHHHHHHHHHHhCCCcccc--CCCcEEEEEeCCC-ccHHHHHHHHHHhCCeEEecccCCCC--CCCCcEEEEEe----C
Q psy16848 389 QDIVAYLRNELIQIGFPVEH--TPSHIIPIKIGNP-ALNTKICDMLLKEKGHYVQPINYPTV--PVGEEKIRLAP----T 459 (514)
Q Consensus 389 ~~~~~~l~~~L~~~g~~~~~--~~~~~~~i~l~~~-~~~~~~~~~Ll~~~GI~v~~~~~~~~--~~~~~~iRl~~----~ 459 (514)
.++++++.+.|.+.|+.+.. ...+++++.+... .+..++.+.| ++.||.+.....|.. +.....+|++. +
T Consensus 341 ~~na~~L~~~L~~~G~~v~~~~t~t~lv~vdl~~~g~~~~~~~~~L-~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~ 419 (490)
T 2a7v_A 341 LKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVL-ELVSITANKNTCPGDRSAITPGGLRLGAPALTS 419 (490)
T ss_dssp HHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTTTCCHHHHHHHH-HHTTEECEEECCTTCCCSSSCSEEEEESHHHHH
T ss_pred HHHHHHHHHHHHHcCcEEecCCCCCeEEEEEeCCCCCCHHHHHHHH-HhCCeEEecCccCCCCCCCCCCceEeccccccc
Confidence 99999999999999988764 3456778887643 3566777777 589999986544332 22357899965 3
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q psy16848 460 PFHTREMIDKFVTDLLAVWKS 480 (514)
Q Consensus 460 ~~~t~e~id~~~~~l~~~l~~ 480 (514)
..++++|++++++.|.+++..
T Consensus 420 ~g~~~~d~~~~~~~i~~~l~~ 440 (490)
T 2a7v_A 420 RQFREDDFRRVVDFIDEGVNI 440 (490)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHh
Confidence 467899999999999998864
No 168
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.93 E-value=6.9e-25 Score=226.10 Aligned_cols=342 Identities=13% Similarity=0.053 Sum_probs=228.3
Q ss_pred eeeecccCCCC-----CChhHHHHHH--HHHHHhCCCCCCcCccc-CcchHHHHHHHHHHhHcCCC-cEEEEec-ccccc
Q psy16848 19 VTCRLSSVQYK-----VPKGGRKCLG--EALEKFGTGAGGTRNIS-GNSLFHEKLEEDVAKLHQKE-AGLVFTS-CYVAN 88 (514)
Q Consensus 19 ~~~d~~~~~~~-----~~~~~~~a~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~-~~i~~~s-Gt~a~ 88 (514)
..+||.....- .+|.+.+++. +.++ .+. ....| +......++++.++++++.+ ..+++++ +++++
T Consensus 26 ~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~-~~~----~~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al 100 (423)
T 3ez1_A 26 LNLNMQRGQPADADFDLSNGLLTVLGAEDVRM-DGL----DLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLEL 100 (423)
T ss_dssp CCEESCCCCCCHHHHHTTGGGGGSCCGGGCEE-TTE----ETTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHH
T ss_pred ceEecCCCCCChHhCCCcHHHHHHHhhhHHhh-cch----hhhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcHHHH
Confidence 46888654443 2456777664 3322 111 11223 33344578999999998854 3455555 45566
Q ss_pred c--cchhhccccCC---------CceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccc
Q psy16848 89 D--STLFTLGKMIP---------GLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 157 (514)
Q Consensus 89 ~--~~l~~l~~~~~---------gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~ 157 (514)
. .++.++....+ ||.|+++.++|......++..|.+++.++..+
T Consensus 101 ~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~------------------------- 155 (423)
T 3ez1_A 101 QGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQS------------------------- 155 (423)
T ss_dssp HHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEET-------------------------
T ss_pred HHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCCC-------------------------
Confidence 5 66666643114 69999999999998888877777766554310
Q ss_pred cccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCE
Q psy16848 158 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPK 237 (514)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~ 237 (514)
.
T Consensus 156 --------------------------------------~----------------------------------------- 156 (423)
T 3ez1_A 156 --------------------------------------D----------------------------------------- 156 (423)
T ss_dssp --------------------------------------T-----------------------------------------
T ss_pred --------------------------------------C-----------------------------------------
Confidence 0
Q ss_pred EEecCCChhHHHHHHhhccCCCceEEEE-ecCCCCCccccCH---HHHHHHH-HHcCCEEEEeccccccccCC-CCCCcc
Q psy16848 238 IIYRHNDVNHLTQVLENMDVKIPKLVAF-ETVHSMTGAICPL---KELCEVS-HQHGALTFVDEVHAVGLYGE-HGAGIG 311 (514)
Q Consensus 238 ~~v~~~d~~~l~~~l~~~~~~~~~~vv~-~~~~nptG~~~~l---~~l~~l~-~~~gv~li~Dea~~~g~~g~-~~~~~~ 311 (514)
..|.+.+++.+++ .+++++|++ ++++||||.+++. ++|.++| ++||+++|+||+|+...+.. .+....
T Consensus 157 ----g~d~~~l~~~l~~--~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~ 230 (423)
T 3ez1_A 157 ----GPDVDAVERLAGT--DPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPV 230 (423)
T ss_dssp ----EECHHHHHHHHHS--CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCC
T ss_pred ----CCCHHHHHHHHhh--CCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCc
Confidence 0145556665542 345788864 5899999999995 5888888 89999999999999433322 111111
Q ss_pred ccCCC-----ccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHh-h--hch
Q psy16848 312 ERDGQ-----LHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRIL-S--SQE 380 (514)
Q Consensus 312 ~~~~~-----~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~--~~~ 380 (514)
+.... ..+.+++++||||.+++ | ||+++++++++.+....... +.+.+...+.++...++.+ . ...
T Consensus 231 ~~~~~~~~~~~~~~~i~~~S~sK~~~~-G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~ 307 (423)
T 3ez1_A 231 NFVVLARDAGYPDRAFVFASTSKITFA-GAGLGFVASSEDNIRWLSKYLGAQ--SIGPNKVEQARHVKFLTEYPGGLEGL 307 (423)
T ss_dssp CHHHHHHHHTCTTSEEEEEESTTTSCS-SSSCEEEEECHHHHHHHHHHHHHS--CSCCCHHHHHHHHHHHHHSTTHHHHH
T ss_pred chhhhhhccCCCCeEEEEeCchhhccC-CcceEEEEeCHHHHHHHHHHHhhh--ccCCCHHHHHHHHHHHHhccchHHHH
Confidence 11110 23678999999998433 5 99999999999887765444 3467888888888887751 1 244
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----CC--CccccC-CCcEEEEEeCCCccHHHHHHHHHHhCCeEEec-ccCCCC--CCC
Q psy16848 381 GVELRAKHQDIVAYLRNELIQ----IG--FPVEHT-PSHIIPIKIGNPALNTKICDMLLKEKGHYVQP-INYPTV--PVG 450 (514)
Q Consensus 381 ~~~~~~~~~~~~~~l~~~L~~----~g--~~~~~~-~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~-~~~~~~--~~~ 450 (514)
+.+.++.++++++.+.+.|.+ .+ +.+..+ .+.++++.++.. +..++.+.| +++||.+.+ +.++.. ...
T Consensus 308 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~-~~~~~~~~l-~~~gv~v~~~g~~~~~~~~~~ 385 (423)
T 3ez1_A 308 MRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEP-VADRVVKLA-EAAGVSLTPAGATYPAGQDPH 385 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSS-CHHHHHHHH-HHTTEECCCTTTTSSTTCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCC-cHHHHHHHH-HHCCcEEecCcccccCCCCCC
Confidence 556667777777777766655 44 444444 345778888764 567777777 599999998 554432 235
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 451 EEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 451 ~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
.+++|++++.. +++++++++++|+++++++
T Consensus 386 ~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~ 415 (423)
T 3ez1_A 386 NRNLRLAPTRP-PVEEVRTAMQVVAACIRLA 415 (423)
T ss_dssp SCEEEECCSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCC-CHHHHHHHHHHHHHHHHHH
Confidence 78999999744 9999999999999998765
No 169
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.93 E-value=2.4e-24 Score=219.44 Aligned_cols=286 Identities=11% Similarity=0.114 Sum_probs=205.6
Q ss_pred chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848 59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ 138 (514)
Q Consensus 59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~ 138 (514)
.+...+++++++++++.++.++++||++|+..++.++.. +||.|+++.+.|.++...++
T Consensus 51 ~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~~~~~~~--~g~~vl~~~~~~~~~~~~~~------------------- 109 (386)
T 1cs1_A 51 NPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLK--PGDLLVAPHDCYGGSYRLFD------------------- 109 (386)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEEETTCCHHHHHHHH-------------------
T ss_pred CccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC--CCCEEEEecCCcHhHHHHHH-------------------
Confidence 467789999999999988889999999999999988865 99999999999988664321
Q ss_pred HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848 139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP 218 (514)
Q Consensus 139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~ 218 (514)
T Consensus 110 -------------------------------------------------------------------------------- 109 (386)
T 1cs1_A 110 -------------------------------------------------------------------------------- 109 (386)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848 219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH 298 (514)
Q Consensus 219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~ 298 (514)
..+...|.+++.++.+|.+.+++.+++ ++++|++++++||+|.++++++|.++|++||+++|+||+|
T Consensus 110 ---------~~~~~~g~~~~~~~~~d~~~l~~~i~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~ 176 (386)
T 1cs1_A 110 ---------SLAKRGCYRVLFVDQGDEQALRAALAE----KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTF 176 (386)
T ss_dssp ---------HHHTTTSCEEEEECTTCHHHHHHHHHT----CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTT
T ss_pred ---------HHHHhcCCEEEEeCCCCHHHHHHhhcc----CCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCC
Confidence 011122444555555566666666652 4789999999999999999999999999999999999999
Q ss_pred cccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecH-HHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848 299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTK-NFIDTIRSYAAGFIFTTSLPPTVLAGAREAI 373 (514)
Q Consensus 299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l 373 (514)
+.+.... .. ..++|++++|+||+++++| |++++++ ++++.+......+ +...++..++++...+
T Consensus 177 ~~~~~~~------~~---~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~l 245 (386)
T 1cs1_A 177 LSPALQN------PL---ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNI--GVTGGAFDSYLLLRGL 245 (386)
T ss_dssp TCTTTCC------GG---GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHH--TCBCCHHHHHHHHHHH
T ss_pred cccccCC------cc---ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhc--CCCCCHHHHHHHHhcc
Confidence 9554311 11 2368999999999997533 8888875 7888887655443 3356777766666655
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHhCC-Cc-----cc-------------cCCCcEEEEEeCCCccHHHHHHHHHHh
Q psy16848 374 RILSSQEGVELRAKHQDIVAYLRNELIQIG-FP-----VE-------------HTPSHIIPIKIGNPALNTKICDMLLKE 434 (514)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~-----~~-------------~~~~~~~~i~l~~~~~~~~~~~~Ll~~ 434 (514)
+. +.+..++..++.+.+.+.|+++. +. -. ...++++.+.+++. ..++.+.| ++
T Consensus 246 ~~-----~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l-~~ 317 (386)
T 1cs1_A 246 RT-----LVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD--EQTLRRFL-GG 317 (386)
T ss_dssp TT-----HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC--HHHHHHHH-HT
T ss_pred cH-----HHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC--HHHHHHHH-Hh
Confidence 42 33456667777778888777652 11 00 12367888888653 55676777 58
Q ss_pred CCeEEecccC---------CC------CC--------CCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848 435 KGHYVQPINY---------PT------VP--------VGEEKIRLAPTPFHTREMIDKFVTDLLAV 477 (514)
Q Consensus 435 ~GI~v~~~~~---------~~------~~--------~~~~~iRl~~~~~~t~e~id~~~~~l~~~ 477 (514)
+||.++...+ |. .+ ..++++|++++..+++++++.+.++|+++
T Consensus 318 ~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 318 LSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA 383 (386)
T ss_dssp CSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CCcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 9998874221 10 01 12579999999888888888888877764
No 170
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.93 E-value=1.4e-25 Score=226.29 Aligned_cols=327 Identities=8% Similarity=0.016 Sum_probs=221.5
Q ss_pred eeeecccCCCCCChhHHHHHHHHHHHhCCCCCCc-----CcccCcchHHHHHHHHHHhHcCCC---cEEEE-eccccccc
Q psy16848 19 VTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGT-----RNISGNSLFHEKLEEDVAKLHQKE---AGLVF-TSCYVAND 89 (514)
Q Consensus 19 ~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~la~~~~~~---~~i~~-~sGt~a~~ 89 (514)
.+.|..+ .+..+|++.+++.+.+..++. .+++ ....+..+..+++++++++++|.+ +.+++ +|||+++.
T Consensus 5 ~~l~~~~-~~~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~ 82 (362)
T 2c0r_A 5 AYNFNAG-PAALPLEVLERAQAEFVDYQH-TGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFA 82 (362)
T ss_dssp CEECCSS-SCCCCHHHHHHHHHTSSSSTT-SSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHH
T ss_pred eeeccCC-CCCCCHHHHHHHHHHHhhhhh-cCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHH
Confidence 3444433 345588999999988865422 1111 111123456789999999999976 44555 57788999
Q ss_pred cchhhccccCCCceEEecCccchhh--hhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848 90 STLFTLGKMIPGLHYISDAGNHASM--IQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK 167 (514)
Q Consensus 90 ~~l~~l~~~~~gd~v~~~~~~h~~~--~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
.++.++.. |||+|++..+.|.+. ...++..| +++.++... +
T Consensus 83 ~~~~~l~~--~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~-~--------------------------------- 125 (362)
T 2c0r_A 83 MIPMNFLK--EGQTANYVMTGSWASKALKEAKLIG-DTHVAASSE-A--------------------------------- 125 (362)
T ss_dssp HHHHHHCC--TTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECG-G---------------------------------
T ss_pred HHHHhcCC--CCCeEEEEecCcHhHHHHHHHHHhC-CeEEEeccc-c---------------------------------
Confidence 99988866 999998765554442 23333344 443322100 0
Q ss_pred HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848 168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH 247 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~ 247 (514)
.+.+. ..+.+.
T Consensus 126 --------------------------~~~~~-------------------------------------------~~~~~~ 136 (362)
T 2c0r_A 126 --------------------------SNYMT-------------------------------------------LPKLQE 136 (362)
T ss_dssp --------------------------GTTCS-------------------------------------------CCCGGG
T ss_pred --------------------------ccccc-------------------------------------------CCCHHH
Confidence 00000 001111
Q ss_pred HHHHHhhccCCCceEEEEecCCCCCccc-cCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcC
Q psy16848 248 LTQVLENMDVKIPKLVAFETVHSMTGAI-CPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT 326 (514)
Q Consensus 248 l~~~l~~~~~~~~~~vv~~~~~nptG~~-~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S 326 (514)
+ . .++++++|++++++||||.. .++++| +|+++|+|++|+++.. +. .+ .+.|++++|
T Consensus 137 ~----~--i~~~t~~v~~~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~--------~~-~~-~~~d~~~~s 194 (362)
T 2c0r_A 137 I----Q--LQDNAAYLHLTSNETIEGAQFKAFPDT------GSVPLIGDMSSDILSR--------PF-DL-NQFGLVYAG 194 (362)
T ss_dssp C----C--CCTTEEEEEEESEETTTTEECSSCCCC------TTSCEEEECTTTTTSS--------CC-CG-GGCSEEEEE
T ss_pred c----c--cCCCcCEEEEeCCcCccceeccccccc------CCCEEEEEChhhccCC--------cc-ch-hHCcEEEEe
Confidence 1 1 24578999999999999996 557766 8999999999996642 11 11 124899999
Q ss_pred CcccccCCC-eEEEecHHHHHHHHhhcCc----------eEeccCCcHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHH
Q psy16848 327 LGKAFGNIG-GYIVGTKNFIDTIRSYAAG----------FIFTTSLPPTVLAGAREAIRILSSQ-EGVELRAKHQDIVAY 394 (514)
Q Consensus 327 ~sK~lg~~G-G~l~~~~~~~~~l~~~~~~----------~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~ 394 (514)
+||++|+.| ||+++++++++.+...... .....+.+...+.++.++++.+.+. +++++++++++++++
T Consensus 195 ~~K~~g~~G~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~ 274 (362)
T 2c0r_A 195 AQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASL 274 (362)
T ss_dssp TTTTTCCSSCEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred ccccccCcCcEEEEEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999888 9999998887665431100 0012356777888889999876554 678899999999999
Q ss_pred HHHHHHhCC-C-ccccC----CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHH
Q psy16848 395 LRNELIQIG-F-PVEHT----PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMID 468 (514)
Q Consensus 395 l~~~L~~~g-~-~~~~~----~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id 468 (514)
+.+.|++++ + ++..+ ...++++.+++..+..++++.| +++||.+.++..+ .+.+|++++..++++|++
T Consensus 275 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~gi~~~~g~~~-----~~~iRis~~~~~~~e~i~ 348 (362)
T 2c0r_A 275 IYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEELEKEFVKAS-EQEGFVGLKGHRS-----VGGLRASIYNAVPYESCE 348 (362)
T ss_dssp HHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHHHHHHHHHHH-HHTTEESCBCCTT-----TCSEEEECCTTSCHHHHH
T ss_pred HHHHHHHcCCccccCCChHHcCCcEEEEEcCCcchHHHHHHHH-HHCCCeeccCCCC-----CCEEEEECCCCCCHHHHH
Confidence 999999986 6 55321 2346777777545677899998 4899988765432 247999999888999999
Q ss_pred HHHHHHHHHHHHc
Q psy16848 469 KFVTDLLAVWKSL 481 (514)
Q Consensus 469 ~~~~~l~~~l~~~ 481 (514)
++++.|++++++.
T Consensus 349 ~l~~~l~~~~~~~ 361 (362)
T 2c0r_A 349 ALVQFMEHFKRSR 361 (362)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987653
No 171
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.93 E-value=1e-25 Score=226.99 Aligned_cols=313 Identities=13% Similarity=0.100 Sum_probs=210.4
Q ss_pred ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCce--EEecC
Q psy16848 31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLH--YISDA 108 (514)
Q Consensus 31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~--v~~~~ 108 (514)
+|++.+++.+.+. ...++..+...++++++++++|.+..++++||++|+..++.++.. +||. |++++
T Consensus 28 ~p~v~~ai~~~~~---------~~~~~~~~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~~--~g~~~vvi~~~ 96 (359)
T 3pj0_A 28 LTEALQNIDDNLE---------SDIYGNGAVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWAD--RKENRRVAYHP 96 (359)
T ss_dssp HHHHTTTSCTTCB---------CCBTTBSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHH--HHTCCEEEECT
T ss_pred CHHHHHHHHhhcc---------cCcccCCHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHh--cCCCcEEEEec
Confidence 5777777666211 122345678899999999999999889899999999999988876 7776 77777
Q ss_pred ccchhhhhh--h-hcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecc
Q psy16848 109 GNHASMIQG--I-RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV 185 (514)
Q Consensus 109 ~~h~~~~~~--~-~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (514)
+.|...... + ...
T Consensus 97 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 112 (359)
T 3pj0_A 97 LSHLEIHEQDGLKELQ---------------------------------------------------------------- 112 (359)
T ss_dssp TCHHHHSSTTHHHHHH----------------------------------------------------------------
T ss_pred cceeeehhcchHHHhc----------------------------------------------------------------
Confidence 777665421 1 122
Q ss_pred ccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEE
Q psy16848 186 HAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAF 265 (514)
Q Consensus 186 ~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~ 265 (514)
|++++.++.++...+.+.+++. .+++++|++
T Consensus 113 ------------------------------------------------g~~~~~v~~~~~~~d~~~l~~~-~~~~~~v~~ 143 (359)
T 3pj0_A 113 ------------------------------------------------QITPLLLGTANQLLTIDDIKSL-REPVSSVLI 143 (359)
T ss_dssp ------------------------------------------------CCEEEECSCTTSCCCHHHHHTC-SSCCSEEEE
T ss_pred ------------------------------------------------CceEEecCCcCCCcCHHHHHhc-cCCceEEEE
Confidence 3334444432222233344444 567899999
Q ss_pred ecCCCCC-ccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCC-CeEEEe
Q psy16848 266 ETVHSMT-GAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI-GGYIVG 340 (514)
Q Consensus 266 ~~~~npt-G~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~-GG~l~~ 340 (514)
++++||+ |.+++ +++|.++|++||+++|+|++|..+.....+....+. ....|+++.|+||+++++ ||++++
T Consensus 144 ~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~---~~~~d~~~~s~sK~~~~~~gg~~~~ 220 (359)
T 3pj0_A 144 ELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEI---CALFDSVYVSFYKGIGGIAGAILAG 220 (359)
T ss_dssp ESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHH---HTTCSEEEEESSSTTCCSSCEEEEE
T ss_pred EecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHh---hccCCEEEEeccccCCCcceEEEEC
Confidence 9999998 78888 455599999999999999998754321111111111 125688888999998654 478889
Q ss_pred cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc--cCCCcEEEEE
Q psy16848 341 TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE--HTPSHIIPIK 417 (514)
Q Consensus 341 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~i~ 417 (514)
++++++.+......+..+.......++++..+++... +..+++.++++++.+.|+++ |+.+. ++.++++++.
T Consensus 221 ~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~ 295 (359)
T 3pj0_A 221 NDDFVQEAKIWKRRYGGDLISLYPYILSADYYFEKRI-----GKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVY 295 (359)
T ss_dssp CHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHG-----GGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEE
T ss_pred CHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEE
Confidence 9999988875432221122233333444445555331 23445678888999999998 77763 3556677777
Q ss_pred eCCC--ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCC---CCHHHHHHHHHHHHHH
Q psy16848 418 IGNP--ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF---HTREMIDKFVTDLLAV 477 (514)
Q Consensus 418 l~~~--~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~---~t~e~id~~~~~l~~~ 477 (514)
++.. .+..++.+.|. ++||.+.++..+.. .+..++|+++... .+.+++++++++|++.
T Consensus 296 ~~~~~~~~~~~l~~~l~-~~GV~v~~g~~~~~-~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 296 FENSADEIGAILTKIQD-ETGVGISGYLQEKS-ADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp ESSCHHHHHHHHHHHHH-HHCEECCSCCEEEE-TTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred ecCccchhHHHHHHHHH-hcCcEecCCccccC-CCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 7643 23567888884 89999999875443 3467899988643 5788888888888764
No 172
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.93 E-value=1.6e-24 Score=220.84 Aligned_cols=323 Identities=17% Similarity=0.122 Sum_probs=229.0
Q ss_pred eeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhc-cc
Q psy16848 19 VTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL-GK 97 (514)
Q Consensus 19 ~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l-~~ 97 (514)
.+|+|...+ + ++++.+++.+++..... ...+...++++.++++++.+++++++||++|+..++.++ ..
T Consensus 9 ~~i~~~~p~-~-~~~~~~a~~~~~~~~~~---------~~~~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~~~~ 77 (393)
T 1mdo_A 9 DFLPFSRPA-M-GAEELAAVKTVLDSGWI---------TTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIG 77 (393)
T ss_dssp CCBCSCCCC-C-CHHHHHHHHHHHHHTCC---------SSSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCC
T ss_pred cccccCCCC-C-CHHHHHHHHHHHhcCCc---------CCChHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHcCCC
Confidence 357776533 2 47888999998876311 123678899999999999998999999999999999888 55
Q ss_pred cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcC
Q psy16848 98 MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHG 177 (514)
Q Consensus 98 ~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (514)
+||.|+++.++|.+...+++..|.+++.++.+. +
T Consensus 78 --~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~-~------------------------------------------- 111 (393)
T 1mdo_A 78 --EGDEVITPSMTWVSTLNMIVLLGANPVMVDVDR-D------------------------------------------- 111 (393)
T ss_dssp --TTCEEEEESSSCHHHHHHHHHTTCEEEEECBCT-T-------------------------------------------
T ss_pred --CCCEEEeCCCccHhHHHHHHHCCCEEEEEeccC-C-------------------------------------------
Confidence 999999999999999888877777766544210 0
Q ss_pred ceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccC
Q psy16848 178 ALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV 257 (514)
Q Consensus 178 ~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~ 257 (514)
+. ..|.+.+++.++
T Consensus 112 -----------------~~---------------------------------------------~~d~~~l~~~l~---- 125 (393)
T 1mdo_A 112 -----------------TL---------------------------------------------MVTPEHIEAAIT---- 125 (393)
T ss_dssp -----------------TC---------------------------------------------CBCHHHHHHHCC----
T ss_pred -----------------cC---------------------------------------------CCCHHHHHHhcC----
Confidence 00 013444444443
Q ss_pred CCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc--ccccC-C
Q psy16848 258 KIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG--KAFGN-I 334 (514)
Q Consensus 258 ~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s--K~lg~-~ 334 (514)
+++++|+++ ||+|.+.++++|.++|+++|+++|+|++|+.|... .+ ...+ . .|++++|+| |++++ .
T Consensus 126 ~~~~~v~~~---~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~-~~----~~~~--~-~d~~~~S~~k~K~l~~~~ 194 (393)
T 1mdo_A 126 PQTKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGTSY-KG----RHIG--A-RGTAIFSFHAIKNITCAE 194 (393)
T ss_dssp TTEEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEE-TT----EETT--S-SSEEEEECCTTSSSCSSS
T ss_pred CCceEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECccccCCeE-CC----eecC--C-CCeEEEeCCCCCcccccc
Confidence 357888765 47999999999999999999999999999965421 11 1111 1 799999999 88865 3
Q ss_pred CeEEEec-HHHHHHHHhhcCce---------------Ee-------ccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy16848 335 GGYIVGT-KNFIDTIRSYAAGF---------------IF-------TTSLPPTVLAGAREAIRILSSQEGVELRAKHQDI 391 (514)
Q Consensus 335 GG~l~~~-~~~~~~l~~~~~~~---------------~~-------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 391 (514)
||+++.+ +++++.+....... .+ +..+++..++++...++. +++..++.+++
T Consensus 195 ~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~-----~~~~~~~~~~~ 269 (393)
T 1mdo_A 195 GGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQK-----LDALNARRAAI 269 (393)
T ss_dssp CEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHT-----HHHHHHHHHHH
T ss_pred ceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 4888886 78888776543211 10 023456655555555442 34567777788
Q ss_pred HHHHHHHHHhCCCcccc-------CCCcEEEEEeCC---CccHHHHHHHHHHhCCeEEecccCCC--------------C
Q psy16848 392 VAYLRNELIQIGFPVEH-------TPSHIIPIKIGN---PALNTKICDMLLKEKGHYVQPINYPT--------------V 447 (514)
Q Consensus 392 ~~~l~~~L~~~g~~~~~-------~~~~~~~i~l~~---~~~~~~~~~~Ll~~~GI~v~~~~~~~--------------~ 447 (514)
.+++.+.|.+.++.+.. ..+.++++.+++ ..+..++.+.|. ++||.++++..|. .
T Consensus 270 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~-~~gi~v~~~~~~~~~~~~~~~~~~~~~~ 348 (393)
T 1mdo_A 270 AAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLK-TKGIGTGLHFRAAHTQKYYRERFPTLTL 348 (393)
T ss_dssp HHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHH-HTTBCCBCCCCCGGGSHHHHHHSTTCCC
T ss_pred HHHHHHHHhcCCcccccCCCCCCCceeEEEEEEecccccccCHHHHHHHHH-hCCCCcccccCccccChhhhccCCccCC
Confidence 99999999887755431 123467888873 345788999995 8999998876541 1
Q ss_pred CC----CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 448 PV----GEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 448 ~~----~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
+. ..+.+|++++..+|++|+++++++|+++++..
T Consensus 349 ~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 386 (393)
T 1mdo_A 349 PDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQG 386 (393)
T ss_dssp HHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred hhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 11 13589999998899999999999999987654
No 173
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.93 E-value=9.4e-25 Score=222.38 Aligned_cols=315 Identities=17% Similarity=0.106 Sum_probs=220.2
Q ss_pred ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhc-cccCCCceEEecCc
Q psy16848 31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL-GKMIPGLHYISDAG 109 (514)
Q Consensus 31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l-~~~~~gd~v~~~~~ 109 (514)
.|++.+++.++++. +. . .+...+...++++.+++++|.++.++++|||+|+..++.++ .. +||+|+++.+
T Consensus 16 ~~~~~~a~~~~l~~-~~-~-----~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~~~--~gd~Vi~~~~ 86 (388)
T 1b9h_A 16 DDAERNGLVRALEQ-GQ-W-----WRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVG--PGTEVIVPAF 86 (388)
T ss_dssp CHHHHHHHHHHHHT-SC-C-----BTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCC--TTCEEEEESS
T ss_pred CHHHHHHHHHHHHc-CC-e-----eecCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCC--CcCEEEECCC
Confidence 47899999998876 21 1 12234668899999999999998999999999999999888 55 9999999999
Q ss_pred cchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848 110 NHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189 (514)
Q Consensus 110 ~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (514)
+|.+...+++..|.+++.++.+. +
T Consensus 87 ~~~~~~~~~~~~g~~~~~v~~~~-~------------------------------------------------------- 110 (388)
T 1b9h_A 87 TFISSSQAAQRLGAVTVPVDVDA-A------------------------------------------------------- 110 (388)
T ss_dssp SCTHHHHHHHHTTCEEEEECBCT-T-------------------------------------------------------
T ss_pred ccHHHHHHHHHcCCEEEEEecCC-C-------------------------------------------------------
Confidence 99999988877777766554310 0
Q ss_pred ccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCC
Q psy16848 190 LYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269 (514)
Q Consensus 190 ~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~ 269 (514)
+. ..|.+.+++.+ ++++++|+ ++
T Consensus 111 -----~~---------------------------------------------~~d~~~l~~~i----~~~~~~v~---~~ 133 (388)
T 1b9h_A 111 -----TY---------------------------------------------NLDPEAVAAAV----TPRTKVIM---PV 133 (388)
T ss_dssp -----TC---------------------------------------------CBCHHHHHHHC----CTTEEEEC---CB
T ss_pred -----cC---------------------------------------------CCCHHHHHHhc----CcCceEEE---Ee
Confidence 00 00344444444 34577777 78
Q ss_pred CCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc--ccccC-CCeEEEecHH-H-
Q psy16848 270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG--KAFGN-IGGYIVGTKN-F- 344 (514)
Q Consensus 270 nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s--K~lg~-~GG~l~~~~~-~- 344 (514)
||+|.+.++++|.++|++||+++|+|++|+.|... .+..+ ... + |+.++||| |++++ .||+++++++ +
T Consensus 134 n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~-~~~~~---~~~--~-~i~~~S~s~~K~l~g~~~G~~~~~~~~~~ 206 (388)
T 1b9h_A 134 HMAGLMADMDALAKISADTGVPLLQDAAHAHGARW-QGKRV---GEL--D-SIATFSFQNGKLMTAGEGGAVVFPDGETE 206 (388)
T ss_dssp CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEE-TTEEG---GGS--S-SCEEEECCTTSSSCSSSCEEEEECTTCHH
T ss_pred CCccCcCCHHHHHHHHHHcCCEEEEecchhcCCcc-CCeec---ccc--c-ceEEEEccCCCcccCCCeEEEEECCHHHH
Confidence 99999999999999999999999999999965431 11111 111 2 45555665 77744 4499888875 5
Q ss_pred -HHHHHhhcCc--------e-----EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcccc-
Q psy16848 345 -IDTIRSYAAG--------F-----IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEH- 408 (514)
Q Consensus 345 -~~~l~~~~~~--------~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~- 408 (514)
++.+...... + +.+..+++..++++...++ .+++.+++++++++++.+.|+++ ++.+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~-----~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 281 (388)
T 1b9h_A 207 KYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLA-----RLDEQIAVRDERWTLLSRLLGAIDGVVPQGG 281 (388)
T ss_dssp HHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHHTSTTCEECCC
T ss_pred HHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCCCccccCC
Confidence 5655432210 0 1122355555555444333 34557788888999999999987 776553
Q ss_pred -----CC-CcEEEEEeCCC--ccHHHHHHHHHHhCCeEEecccCCCC----------CC----------------CCcEE
Q psy16848 409 -----TP-SHIIPIKIGNP--ALNTKICDMLLKEKGHYVQPINYPTV----------PV----------------GEEKI 454 (514)
Q Consensus 409 -----~~-~~~~~i~l~~~--~~~~~~~~~Ll~~~GI~v~~~~~~~~----------~~----------------~~~~i 454 (514)
+. +.++++.++.. .+..++.+.|. ++||.++++..+.. +. ..+.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 360 (388)
T 1b9h_A 282 DVRADRNSHYMAMFRIPGLTEERRNALVDRLV-EAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCV 360 (388)
T ss_dssp CTTCCBCCCSEEEEECTTCCHHHHHHHHHHHH-HTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEE
T ss_pred CcCCCccceEEEEEEeCCcCcccHHHHHHHHH-HCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeE
Confidence 22 45788888753 25678999995 89999987654210 00 02479
Q ss_pred EEEeCCCC-CHHHHHHHHHHHHHHHHH
Q psy16848 455 RLAPTPFH-TREMIDKFVTDLLAVWKS 480 (514)
Q Consensus 455 Rl~~~~~~-t~e~id~~~~~l~~~l~~ 480 (514)
|++++..+ |++|++++++.|++++++
T Consensus 361 ~l~~~~~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 361 WLHHRVLLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp EEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 99999889 999999999999998764
No 174
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.93 E-value=8.3e-25 Score=224.26 Aligned_cols=288 Identities=12% Similarity=0.070 Sum_probs=203.4
Q ss_pred cchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848 58 NSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT 137 (514)
Q Consensus 58 ~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~ 137 (514)
..+..+++++++++++|.+++++++||++|+..++.++.+ +||+|+++.+.|.++...++.
T Consensus 80 ~~p~~~~le~~lA~l~g~~~~i~~ssGt~Ai~~al~~l~~--~Gd~Vi~~~~~y~~~~~~~~~----------------- 140 (415)
T 2fq6_A 80 GTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIE--QGDHVLMTNTAYEPSQDFCSK----------------- 140 (415)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCC--TTCEEEEETTSCHHHHHHHHH-----------------
T ss_pred CCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHhC--CCCEEEEeCCCchHHHHHHHH-----------------
Confidence 3577899999999999998899999999999999988866 999999999999887743310
Q ss_pred HHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848 138 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN 217 (514)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~ 217 (514)
T Consensus 141 -------------------------------------------------------------------------------- 140 (415)
T 2fq6_A 141 -------------------------------------------------------------------------------- 140 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHH--cCCEEEEe
Q psy16848 218 PEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ--HGALTFVD 295 (514)
Q Consensus 218 ~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~--~gv~li~D 295 (514)
.+...|.++.+++.+|.+.+++.+ +++|++|++++++||+|.++|+++|.++|++ +|+++|+|
T Consensus 141 -----------~l~~~G~~v~~v~~~d~~~le~ai----~~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD 205 (415)
T 2fq6_A 141 -----------ILSKLGVTTSWFDPLIGADIVKHL----QPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMID 205 (415)
T ss_dssp -----------TGGGGTCEEEEECTTCGGGGGGGC----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEE
T ss_pred -----------HHHHcCcEEEEECCCCHHHHHHhh----ccCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEE
Confidence 112234555555555555554444 3468999999999999999999999999999 99999999
Q ss_pred ccccccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHH
Q psy16848 296 EVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGARE 371 (514)
Q Consensus 296 ea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~ 371 (514)
++|+.+.... + +..++|++++|+||++++. ||++++++++++.+....... +...++..+..+..
T Consensus 206 ~a~a~~~~~~------p---~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~--G~~~~~~~a~~~~~ 274 (415)
T 2fq6_A 206 NTWAAGVLFK------A---LDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLM--GQMVDADTAYITSR 274 (415)
T ss_dssp CTTTTTTSSC------G---GGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHT--TCCCCHHHHHHHHH
T ss_pred CCCcccccCC------c---cccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhc--CCCCCHHHHHHHHh
Confidence 9998543211 1 1237899999999999874 389999888888776544322 33456665555555
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcc--c----------------cCCCcEEEEEeCCC---ccHHHHHH
Q psy16848 372 AIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPV--E----------------HTPSHIIPIKIGNP---ALNTKICD 429 (514)
Q Consensus 372 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~--~----------------~~~~~~~~i~l~~~---~~~~~~~~ 429 (514)
.++.+ ....++..++.+.+.+.|++. .+.. . ...++++.+.+++. .....+.+
T Consensus 275 ~l~~l-----~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~ 349 (415)
T 2fq6_A 275 GLRTL-----GVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLD 349 (415)
T ss_dssp HHHHH-----HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHT
T ss_pred hhhHH-----HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHH
Confidence 55533 335566677777888888775 2210 0 12456889998752 34455555
Q ss_pred HHHHhCCeEEecccCCC------------------CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848 430 MLLKEKGHYVQPINYPT------------------VPVGEEKIRLAPTPFHTREMIDKFVTDLLA 476 (514)
Q Consensus 430 ~Ll~~~GI~v~~~~~~~------------------~~~~~~~iRl~~~~~~t~e~id~~~~~l~~ 476 (514)
.+ +..++.++.|..|. ....++.+|+|++..+++++++.+.++|++
T Consensus 350 ~l-~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 350 NF-SLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp TC-SSCEECSCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred hC-CcCeEeccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 54 24445554332211 111257999999999999999998888864
No 175
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.93 E-value=1e-24 Score=227.67 Aligned_cols=358 Identities=15% Similarity=0.107 Sum_probs=228.2
Q ss_pred CCceeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhc
Q psy16848 16 SNRVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL 95 (514)
Q Consensus 16 ~g~~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l 95 (514)
.|+.|+|+.+.... +.+.+++.+++.. +.. .++..+...+++++++++++.+++++++|||+|+..++.++
T Consensus 41 ~g~~ylD~~~~~~~--~~v~~a~~~~~~~-~~~------~y~~~~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al~~~ 111 (467)
T 1ax4_A 41 SSAVYIDLLTDSGT--NAMSDHQWAAMIT-GDE------AYAGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVL 111 (467)
T ss_dssp GGGCSEECSCSSSC--CCEEHHHHHHHHT-CCC------CSSSCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHH
T ss_pred CCceeeecccCcCC--HHHHHHHHHHHhh-ccc------ccccCccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHHHHH
Confidence 45567777543332 8888888887764 211 12334567899999999999998999999999999999887
Q ss_pred cc--cCCCce---EEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848 96 GK--MIPGLH---YISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 170 (514)
Q Consensus 96 ~~--~~~gd~---v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
.. ..+||. |+++.+.|.....+++..|.+++...... .+ ...
T Consensus 112 ~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~--~~-------~~~------------------------ 158 (467)
T 1ax4_A 112 LKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEK--AF-------DSE------------------------ 158 (467)
T ss_dssp HHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGG--GG-------CTT------------------------
T ss_pred HHhhccCCCccceEEEeccccchhhHHHhccCCceecccccc--cc-------ccc------------------------
Confidence 42 017898 88885555666767777777655332100 00 000
Q ss_pred hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec-CCChhHHH
Q psy16848 171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR-HNDVNHLT 249 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~-~~d~~~l~ 249 (514)
...... ..|.+.++
T Consensus 159 -----------------------------------------------------------------~~~~~~~~~d~~~le 173 (467)
T 1ax4_A 159 -----------------------------------------------------------------TYDDWKGDFDIKKLK 173 (467)
T ss_dssp -----------------------------------------------------------------SCCTTTTCBCHHHHH
T ss_pred -----------------------------------------------------------------ccCCcccccCHHHHH
Confidence 000000 12677777
Q ss_pred HHHhhccCCCceEEEEecCCCCC-ccccC---HHHHHHHHHHcCCEEEEeccccc-ccc-------CCCCCCccccC-CC
Q psy16848 250 QVLENMDVKIPKLVAFETVHSMT-GAICP---LKELCEVSHQHGALTFVDEVHAV-GLY-------GEHGAGIGERD-GQ 316 (514)
Q Consensus 250 ~~l~~~~~~~~~~vv~~~~~npt-G~~~~---l~~l~~l~~~~gv~li~Dea~~~-g~~-------g~~~~~~~~~~-~~ 316 (514)
+.+.+...+++++|++++++||+ |.+++ +++|+++|++||+++|+|+++.+ +.. +..+.++.+.. ..
T Consensus 174 ~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (467)
T 1ax4_A 174 ENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDM 253 (467)
T ss_dssp HHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHH
T ss_pred HHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhh
Confidence 77765322358999999999999 88877 68999999999999999999774 221 11221111110 00
Q ss_pred ccCceEEEcCCcccccCC-CeEEEec-H-HHHHHHHhhcCce-E-ecc-CCcHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q psy16848 317 LHNMDIISGTLGKAFGNI-GGYIVGT-K-NFIDTIRSYAAGF-I-FTT-SLPPTVLAGAREAIRILSSQEGVELRAKHQD 390 (514)
Q Consensus 317 ~~~~di~~~S~sK~lg~~-GG~l~~~-~-~~~~~l~~~~~~~-~-~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 390 (514)
....|++++|+||++|.+ ||+++++ + ++++.+......+ . .+. ..+...+.++..+++...+ ++..++..+
T Consensus 254 ~~~~d~~~~s~sK~~g~~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~ 330 (467)
T 1ax4_A 254 YKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE---EEYLHYRIG 330 (467)
T ss_dssp GGGCSEEEEETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred ccccceEEEeccccCCCCcceEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhh---hhHHHHHHH
Confidence 023678889999999876 6888877 6 7877765432211 0 011 2233333333335554322 123344456
Q ss_pred HHHHHHHHHHhCCCccccC-CCcEEEEE-------eCC-CccHHHHHHHHHHhCCeEEec-ccCCCC---------CCCC
Q psy16848 391 IVAYLRNELIQIGFPVEHT-PSHIIPIK-------IGN-PALNTKICDMLLKEKGHYVQP-INYPTV---------PVGE 451 (514)
Q Consensus 391 ~~~~l~~~L~~~g~~~~~~-~~~~~~i~-------l~~-~~~~~~~~~~Ll~~~GI~v~~-~~~~~~---------~~~~ 451 (514)
+++++.+.|++.++++..+ .+.++++. ++. ..+..++++.|++++||.+.+ +.++.. +...
T Consensus 331 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~ 410 (467)
T 1ax4_A 331 QVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADM 410 (467)
T ss_dssp HHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSC
T ss_pred HHHHHHHHHHhCCCCcccCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCcccccccccccccccccc
Confidence 7788888888777776544 34566666 332 234678888884589999988 543111 1124
Q ss_pred cEEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCC
Q psy16848 452 EKIRLAPTP-FHTREMIDKFVTDLLAVWKSLDL 483 (514)
Q Consensus 452 ~~iRl~~~~-~~t~e~id~~~~~l~~~l~~~~~ 483 (514)
+++|++++. .+|++++++++++|++++++.+.
T Consensus 411 ~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~~~ 443 (467)
T 1ax4_A 411 EFMRLTIARRVYTNDHMDYIADALIGLKEKFAT 443 (467)
T ss_dssp CEEEEECCTTSSCHHHHHHHHHHHHTTHHHHTT
T ss_pred ceEEEecccccCCHHHHHHHHHHHHHHHHhhhc
Confidence 799999984 48999999999999999887643
No 176
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.93 E-value=1.3e-24 Score=221.90 Aligned_cols=286 Identities=15% Similarity=0.090 Sum_probs=201.0
Q ss_pred chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848 59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ 138 (514)
Q Consensus 59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~ 138 (514)
.+..+++++++++++|.++.++++||++|+..++. +.+ +||+|+++.+.|.++...++
T Consensus 54 ~~~~~~lr~~la~~~g~~~~i~~~sGt~a~~~al~-~~~--~gd~Vi~~~~~y~~~~~~~~------------------- 111 (393)
T 1n8p_A 54 NPNRENLERAVAALENAQYGLAFSSGSATTATILQ-SLP--QGSHAVSIGDVYGGTHRYFT------------------- 111 (393)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHH-TSC--SSCEEEEESSCCHHHHHHHH-------------------
T ss_pred ChhHHHHHHHHHHHhCCCcEEEECChHHHHHHHHH-HcC--CCCEEEEeCCCchHHHHHHH-------------------
Confidence 46788999999999999889999999999999998 765 99999999999987654221
Q ss_pred HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848 139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP 218 (514)
Q Consensus 139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~ 218 (514)
T Consensus 112 -------------------------------------------------------------------------------- 111 (393)
T 1n8p_A 112 -------------------------------------------------------------------------------- 111 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHc----CCEEEE
Q psy16848 219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH----GALTFV 294 (514)
Q Consensus 219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~----gv~li~ 294 (514)
..+...|++++.++.+| +.+++.+ ++++++|++++++||+|.++|+++|.++|+++ |+++|+
T Consensus 112 ---------~~~~~~G~~v~~v~~~d-~~l~~~i----~~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~liv 177 (393)
T 1n8p_A 112 ---------KVANAHGVETSFTNDLL-NDLPQLI----KENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVV 177 (393)
T ss_dssp ---------HTSTTTCSCCEEESSHH-HHHHHHS----CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEE
T ss_pred ---------HHHHHcCcEEEEeCCCh-HHHHHhc----ccCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEE
Confidence 01112244455555433 3333333 35689999999999999999999999999999 999999
Q ss_pred eccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHH
Q psy16848 295 DEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGA 369 (514)
Q Consensus 295 Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~ 369 (514)
|++|+.+... ... ..++|++++|+||++|+.| |+++++ +++++.+......+ +...++..+.++
T Consensus 178 D~a~~~~~~~-------~~~--~~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~--g~~~~~~~~~~~ 246 (393)
T 1n8p_A 178 DNTFLSPYIS-------NPL--NFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAI--GAIPSPFDAWLT 246 (393)
T ss_dssp ECTTTHHHHC-------CGG--GGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHH--CCCCCHHHHHHH
T ss_pred eCCccccccC-------CHH--HcCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhc--CCCCCHHHHHHH
Confidence 9999966542 111 2268999999999999765 999884 78888877654333 335566666655
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC--Cc-c-c----------------cC-C-CcEEEEEeCCC-ccHHH
Q psy16848 370 REAIRILSSQEGVELRAKHQDIVAYLRNELIQIG--FP-V-E----------------HT-P-SHIIPIKIGNP-ALNTK 426 (514)
Q Consensus 370 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~-~-~----------------~~-~-~~~~~i~l~~~-~~~~~ 426 (514)
..+++. +....++..++.+.+.+.|++.. +. + . .. . ++++.+.++.. .+...
T Consensus 247 ~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~ 321 (393)
T 1n8p_A 247 HRGLKT-----LHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASK 321 (393)
T ss_dssp HHHHTT-----HHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHH
T ss_pred Hhccch-----HHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHH
Confidence 555543 23455666677777777777652 21 1 0 11 3 66888988743 34555
Q ss_pred HHHHHHHhCCeEEecccCCC------C--------------CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848 427 ICDMLLKEKGHYVQPINYPT------V--------------PVGEEKIRLAPTPFHTREMIDKFVTDLLAV 477 (514)
Q Consensus 427 ~~~~Ll~~~GI~v~~~~~~~------~--------------~~~~~~iRl~~~~~~t~e~id~~~~~l~~~ 477 (514)
+.+.+ +..++.++.|..|. . ...++.+|+|++..+++++++.+.++|+++
T Consensus 322 ~l~~l-~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 322 FASST-RLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp HHHHC-SSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHhhC-CcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 66665 34555554332111 0 112579999999999999999999998865
No 177
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.93 E-value=6.4e-25 Score=226.38 Aligned_cols=338 Identities=13% Similarity=0.012 Sum_probs=224.3
Q ss_pred eeecccCCC----CC-ChhHHHHHHHHHH-HhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC-cEEEEecccc-cc--c
Q psy16848 20 TCRLSSVQY----KV-PKGGRKCLGEALE-KFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE-AGLVFTSCYV-AN--D 89 (514)
Q Consensus 20 ~~d~~~~~~----~~-~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~i~~~sGt~-a~--~ 89 (514)
.+||..+.. ++ +|.+.+++.+++. ..+. ....|+......++++.++++++.+ +.+++++|++ ++ .
T Consensus 34 ~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~ 109 (422)
T 3d6k_A 34 SLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGV----DCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFD 109 (422)
T ss_dssp CEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCC----BTTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHH
T ss_pred eEeCCCCCCChhhCCCcHHHHHHHHHHHhhccch----hhhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHH
Confidence 689976655 22 3467766654321 1110 1112222333578888888888754 3455666554 55 3
Q ss_pred cchhhccccCC------------CceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccc
Q psy16848 90 STLFTLGKMIP------------GLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 157 (514)
Q Consensus 90 ~~l~~l~~~~~------------gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~ 157 (514)
.++.++.. + +|.|+++.++|......++..|.+++.++.++ +
T Consensus 110 ~~~~~l~~--~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~----------------------- 163 (422)
T 3d6k_A 110 LISWSYTW--GNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTD-E----------------------- 163 (422)
T ss_dssp HHHHHHHH--CCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEET-T-----------------------
T ss_pred HHHHHhcC--cccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCCC-C-----------------------
Confidence 44455543 4 34799999999998887777777766544310 0
Q ss_pred cccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCE
Q psy16848 158 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPK 237 (514)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~ 237 (514)
T Consensus 164 -------------------------------------------------------------------------------- 163 (422)
T 3d6k_A 164 -------------------------------------------------------------------------------- 163 (422)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCChhHHHHHHhhccCCCceEEE-EecCCCCCccccCH---HHHHHHHH-HcCCEEEEeccccccccCCCCCCccc
Q psy16848 238 IIYRHNDVNHLTQVLENMDVKIPKLVA-FETVHSMTGAICPL---KELCEVSH-QHGALTFVDEVHAVGLYGEHGAGIGE 312 (514)
Q Consensus 238 ~~v~~~d~~~l~~~l~~~~~~~~~~vv-~~~~~nptG~~~~l---~~l~~l~~-~~gv~li~Dea~~~g~~g~~~~~~~~ 312 (514)
..|++.+++.+++ .++++++ +++++||||.+++. ++|.++|+ +||+++|+||+|..+.+...+....+
T Consensus 164 ----g~d~~~l~~~l~~---~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~ 236 (422)
T 3d6k_A 164 ----GPDMGVVRELVKD---PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHN 236 (422)
T ss_dssp ----EECHHHHHHHHTS---TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCC
T ss_pred ----CCCHHHHHHHHhc---CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcC
Confidence 0145555555532 2477877 78999999999995 58888888 99999999999984222222211111
Q ss_pred c------CCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHh--hhchH
Q psy16848 313 R------DGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRIL--SSQEG 381 (514)
Q Consensus 313 ~------~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~ 381 (514)
. .+ ..+.+++++||||+. .+| ||+++++++++.+......+ +.+.+.+.+.++.++++.. ...++
T Consensus 237 ~~~~~~~~~-~~~~~i~~~S~SK~~-~~GlriG~~~~~~~l~~~l~~~~~~~--~~~~~~~~q~a~~~~l~~~~~~~~~~ 312 (422)
T 3d6k_A 237 VIEFAQAAG-NPNRFWFMSSTSKIT-HAGSGVSFFASSKENIEWYASHANVR--GIGPNKLNQLAHAQFFGDVAGLKAHM 312 (422)
T ss_dssp HHHHHHHTT-CTTCEEEEEESTTTS-CTTSSCEEEECCHHHHHHHHHHHHHH--CSCCCHHHHHHHHHHHCSHHHHHHHH
T ss_pred hhhHhhccC-CCCcEEEEcChhhhc-CcccceEEEEeCHHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHhCcchHHHHH
Confidence 1 11 236789999999984 446 99999999999888765444 3467888888888877631 12456
Q ss_pred HHHHHHHHHHHHHHHHHHHh----CC-CccccC-CCcEEEEEeCCCccHHHHHHHHHHhCCeEEec-ccCCC-CC-CCCc
Q psy16848 382 VELRAKHQDIVAYLRNELIQ----IG-FPVEHT-PSHIIPIKIGNPALNTKICDMLLKEKGHYVQP-INYPT-VP-VGEE 452 (514)
Q Consensus 382 ~~~~~~~~~~~~~l~~~L~~----~g-~~~~~~-~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~-~~~~~-~~-~~~~ 452 (514)
++.++.++++++++.+.|.+ .+ +.+..+ .+.++++.++.. +..++.+.| +++||.+.+ +.++. .. ...+
T Consensus 313 ~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~-~~~~~~~~l-~~~gV~v~~~g~~f~~~~~~~~~ 390 (422)
T 3d6k_A 313 LKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPG-TASRVVELA-KEAGIALTGAGSSFPLHNDPNNE 390 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTT-CHHHHHHHH-HHTTEECCCTTTTSGGGCCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCC-CHHHHHHHH-HHCCeEEEcCccccCCCCCCCCC
Confidence 67778888888888887765 23 454444 455778888753 456777777 599999998 44332 11 2467
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 453 KIRLAPTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 453 ~iRl~~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
++|++++. ++++++++++++|+++++++
T Consensus 391 ~iRis~~~-~~~e~i~~~~~~l~~~l~~~ 418 (422)
T 3d6k_A 391 NIRLAPSL-PPVAELEVAMDGFATCVLMA 418 (422)
T ss_dssp EEEECCSS-SCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecCC-CCHHHHHHHHHHHHHHHHHH
Confidence 99999996 89999999999999988764
No 178
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.93 E-value=1.4e-25 Score=225.81 Aligned_cols=328 Identities=9% Similarity=0.056 Sum_probs=221.7
Q ss_pred eeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCc-----ccCcchHHHHHHHHHHhHcCCC--cEEE-Eecc-ccccc
Q psy16848 19 VTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRN-----ISGNSLFHEKLEEDVAKLHQKE--AGLV-FTSC-YVAND 89 (514)
Q Consensus 19 ~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~la~~~~~~--~~i~-~~sG-t~a~~ 89 (514)
+.+++..+.+..+|.+.+++.+.+..+ .+.+...+ ..+..+..+++++++++++|.+ +.++ ++++ |+|+.
T Consensus 3 ~~~~~~~g~~~~p~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~ 81 (360)
T 1w23_A 3 QVFNFNAGPSALPKPALERAQKELLNF-NDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFT 81 (360)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSS-TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHH
T ss_pred ceEeecCCCcCCCHHHHHHHHHHhhhh-ccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHH
Confidence 345565555556789999998887654 11111111 2233457889999999999975 2444 4444 67888
Q ss_pred cchhhcccc-CCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848 90 STLFTLGKM-IPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE 168 (514)
Q Consensus 90 ~~l~~l~~~-~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
.++.++... .+||.|+++.++|.+.. .++..| +++.++.+..+ |
T Consensus 82 ~~~~~l~~~~~~g~~vi~~~~~~~~~~-~~~~~g-~~~~v~~~~~~--------------------------~------- 126 (360)
T 1w23_A 82 MLPMNLLTKGTIGNYVLTGSWSEKALK-EAKLLG-ETHIAASTKAN--------------------------S------- 126 (360)
T ss_dssp HHHHHHCCTTCEEEEEECSHHHHHHHH-HHHTTS-EEEEEEECGGG--------------------------T-------
T ss_pred HHHHHhcCCCCcccEEEecchhHHHHH-HHHHhC-CeEEeeccccc--------------------------C-------
Confidence 877777641 25788999888887643 234445 54433221000 0
Q ss_pred HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848 169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL 248 (514)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l 248 (514)
..|.+.+
T Consensus 127 -------------------------------------------------------------------------~~d~~~l 133 (360)
T 1w23_A 127 -------------------------------------------------------------------------YQSIPDF 133 (360)
T ss_dssp -------------------------------------------------------------------------SCSCCCG
T ss_pred -------------------------------------------------------------------------cCCccch
Confidence 0022222
Q ss_pred HHHHhh-ccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCC
Q psy16848 249 TQVLEN-MDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 327 (514)
Q Consensus 249 ~~~l~~-~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~ 327 (514)
++ ..++++++|++++++||||.+++ + ++++||+++|+|++|+.+.. +. +.. ..|++++|+
T Consensus 134 ----~~~~i~~~~k~v~~~~~~nptG~~~~--~---i~~~~~~~li~D~a~~~~~~-----~~-~~~----~~di~~~s~ 194 (360)
T 1w23_A 134 ----SEFQLNENDAYLHITSNNTIYGTQYQ--N---FPEINHAPLIADMSSDILSR-----PL-KVN----QFGMIYAGA 194 (360)
T ss_dssp ----GGCCCCTTEEEEEEESEETTTTEECS--S---CCCCCSSCEEEECTTTTTSS-----CC-CGG----GCSEEEEET
T ss_pred ----HhhccCCCCCEEEEeCCCCCcceecc--c---ccccCCceEEEechhhcCCC-----Cc-Ccc----cCCEEEEEc
Confidence 22 33567899999999999999987 3 33389999999999986542 11 111 237999999
Q ss_pred cccccCCC-eEEEecHHHHHHHHhhcCceE---------e-ccCCcHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHH
Q psy16848 328 GKAFGNIG-GYIVGTKNFIDTIRSYAAGFI---------F-TTSLPPTVLAGAREAIRILSSQ-EGVELRAKHQDIVAYL 395 (514)
Q Consensus 328 sK~lg~~G-G~l~~~~~~~~~l~~~~~~~~---------~-~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l 395 (514)
||.+|+.| |++++++++++.+........ + ..+.+...+.++.++++.+.+. ++++++++++++++++
T Consensus 195 sK~~~~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l 274 (360)
T 1w23_A 195 QKNLGPSGVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKII 274 (360)
T ss_dssp TTTTSCTTCEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCcEEEEEcHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 99999878 999999888766544321100 0 1245666777777888876544 6788999999999999
Q ss_pred HHHHHhCC-C-ccc-cC--CCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHH
Q psy16848 396 RNELIQIG-F-PVE-HT--PSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDK 469 (514)
Q Consensus 396 ~~~L~~~g-~-~~~-~~--~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~ 469 (514)
.+.|++++ + ... .+ .++ ++++.+++..+..++.+.|. ++||.+.++.. ..+++|++++..++++++++
T Consensus 275 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~~-----~~~~iRis~~~~~~~~~i~~ 348 (360)
T 1w23_A 275 YDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEELNQQFLAKAK-EQGFVGLNGHR-----SVGGCRASIYNAVPIDACIA 348 (360)
T ss_dssp HHHHHTTTTSSEESSCGGGBCSSEEEEECSSHHHHHHHHHHHH-HTTEESCBCCT-----TTCSEEEECCTTSCHHHHHH
T ss_pred HHHHHHccCcccccCCchhccCcEEEEEcCCCccHHHHHHHHH-HCCeeeecCCC-----CCCeEEEEecCCCCHHHHHH
Confidence 99999875 4 432 12 234 78888876445677888884 89999876653 14689999998889999999
Q ss_pred HHHHHHHHHHH
Q psy16848 470 FVTDLLAVWKS 480 (514)
Q Consensus 470 ~~~~l~~~l~~ 480 (514)
++++|++++++
T Consensus 349 ~~~~l~~~~~~ 359 (360)
T 1w23_A 349 LRELMIQFKEN 359 (360)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 179
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.93 E-value=5.2e-25 Score=223.30 Aligned_cols=324 Identities=17% Similarity=0.184 Sum_probs=210.0
Q ss_pred hcCCc-eeeecccC--CCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC---CcEEEEeccccc
Q psy16848 14 HKSNR-VTCRLSSV--QYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK---EAGLVFTSCYVA 87 (514)
Q Consensus 14 ~~~g~-~~~d~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~i~~~sGt~a 87 (514)
...|. .++|+.+. .+..+|++.+++. .+ + +...+.+++++.+++++|. +++++++||++|
T Consensus 23 ~~~g~~~v~~~~~~~~~~~~~~~v~~a~~----~~----~------~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a 88 (374)
T 2aeu_A 23 NEKGRDALYDLSGLSGGFLIDEKDKALLN----TY----I------GSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSA 88 (374)
T ss_dssp HHTCGGGCEECSSCCCCCCCCHHHHHHHT----ST----T------HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHH
T ss_pred hccCccceeeecccCCCCCCCHHHHHHHH----Hh----c------CchHHHHHHHHHHHHHhCCCCcceEEEEcChHHH
Confidence 34676 67787543 3334667666664 21 1 1134557788888888998 678888999999
Q ss_pred cccchhhccccCCCceEEecCccchhhh---hhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCcc
Q psy16848 88 NDSTLFTLGKMIPGLHYISDAGNHASMI---QGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC 164 (514)
Q Consensus 88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~---~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
+..++.++ +||.|+++.+.|++.. ..++..
T Consensus 89 ~~~~~~~~----~gd~Vl~~~~~y~~~~~~~~~~~~~------------------------------------------- 121 (374)
T 2aeu_A 89 ILATILAL----KPKKVIHYLPELPGHPSIERSCKIV------------------------------------------- 121 (374)
T ss_dssp HHHHHHHH----CCSEEEEECSSSSCCTHHHHHHHHT-------------------------------------------
T ss_pred HHHHHHhC----CCCEEEEecCCCCccHHHHHHHHHc-------------------------------------------
Confidence 99888766 8999999998665432 233333
Q ss_pred chhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCC
Q psy16848 165 PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHND 244 (514)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d 244 (514)
|++++.+ .|
T Consensus 122 ---------------------------------------------------------------------g~~~~~v--~d 130 (374)
T 2aeu_A 122 ---------------------------------------------------------------------NAKYFES--DK 130 (374)
T ss_dssp ---------------------------------------------------------------------TCEEEEE--SC
T ss_pred ---------------------------------------------------------------------CcEEEEe--CC
Confidence 3444444 23
Q ss_pred hhHHHHHHhhccCCCceE-EEEecCCCCCc-cccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceE
Q psy16848 245 VNHLTQVLENMDVKIPKL-VAFETVHSMTG-AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDI 322 (514)
Q Consensus 245 ~~~l~~~l~~~~~~~~~~-vv~~~~~nptG-~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di 322 (514)
.+.+++ . ++++++ |++++++||+| ...++++|.++|++||+++|+||+|+.+..+...... . ...++|+
T Consensus 131 ~~~l~~----~-~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~--~--~~~~~di 201 (374)
T 2aeu_A 131 VGEILN----K-IDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPP--A--LKLGADL 201 (374)
T ss_dssp HHHHHT----T-CCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCC--H--HHHTCSE
T ss_pred HHHHHh----c-CCCccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCC--c--cccCCcE
Confidence 333332 2 356889 99999999999 7778999999999999999999999855321110000 1 1235799
Q ss_pred EEcCCcccccC-CCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHH----HHHHHH
Q psy16848 323 ISGTLGKAFGN-IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDI----VAYLRN 397 (514)
Q Consensus 323 ~~~S~sK~lg~-~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~----~~~l~~ 397 (514)
+++|+||++++ .+||+++++++++.+......+ +.+.++..++++.++++.+..+.+.+..++.+.. .+.+.+
T Consensus 202 ~~~S~sK~l~g~~~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 279 (374)
T 2aeu_A 202 VVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTKF--GLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNK 279 (374)
T ss_dssp EEEETTSSSSSCSCEEEEEEHHHHHHHHHHHHTT--TCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred EEecCcccccCcceEEEEECHHHHHHHHHhhccc--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999864 3499999999999887655333 3356888888888888865321222333333333 455555
Q ss_pred HHHhC----CCccccCCCcEEEEE--eCCCc---cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCC-CCCHHHH
Q psy16848 398 ELIQI----GFPVEHTPSHIIPIK--IGNPA---LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTP-FHTREMI 467 (514)
Q Consensus 398 ~L~~~----g~~~~~~~~~~~~i~--l~~~~---~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~-~~t~e~i 467 (514)
.|.+. |+.+..+..+++... ++... +..+++..+++++||.+.++..+ +.+.+++|++++. ..+++++
T Consensus 280 ~L~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~--~~~~~~lRi~~~~~~~~~~~l 357 (374)
T 2aeu_A 280 ELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGM--PGASKSLRIDLTSRDAERIDD 357 (374)
T ss_dssp HHTTTCTTEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSS--CSSCCSEEEETTSGGGGGSCH
T ss_pred hhhhhhhccCcceeeCCceEEEEeecccccccccchHHHHHHHHHhCCEEEecCCCC--CCCCCeEEEEcCCchHHHHHH
Confidence 55543 444433333433332 22111 11236666666789999987642 3345689999973 2233358
Q ss_pred HHHHHHHHHHHHHcC
Q psy16848 468 DKFVTDLLAVWKSLD 482 (514)
Q Consensus 468 d~~~~~l~~~l~~~~ 482 (514)
+++.+.++++++++.
T Consensus 358 ~~l~~~l~~~l~~~~ 372 (374)
T 2aeu_A 358 NYIIKAIVESIKMAF 372 (374)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988764
No 180
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.93 E-value=3.7e-24 Score=218.20 Aligned_cols=282 Identities=15% Similarity=0.125 Sum_probs=197.5
Q ss_pred chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848 59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ 138 (514)
Q Consensus 59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~ 138 (514)
.+...++++++++++|.+++++++||++|+..++.++.. +||+|+++.+.|.++...++
T Consensus 58 ~~~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~~~~~--~gd~vl~~~~~y~~~~~~~~------------------- 116 (389)
T 3acz_A 58 NPTVEQFEEMVCSIEGAAGSAAFGSGMGAISSSTLAFLQ--KGDHLIAGDTLYGCTVSLFT------------------- 116 (389)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTTCC--TTCEEEEESSCCHHHHHHHH-------------------
T ss_pred ChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHhC--CCCEEEEeCCCchHHHHHHH-------------------
Confidence 567899999999999999999999999999999988865 99999999999998765421
Q ss_pred HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848 139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP 218 (514)
Q Consensus 139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~ 218 (514)
T Consensus 117 -------------------------------------------------------------------------------- 116 (389)
T 3acz_A 117 -------------------------------------------------------------------------------- 116 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848 219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH 298 (514)
Q Consensus 219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~ 298 (514)
..+...|.+++.++..|.+.+++.+ ++++++|++++++||+|.+.|+++|.++|+++|+++|+|++|
T Consensus 117 ---------~~~~~~g~~~~~v~~~d~~~l~~~i----~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~ 183 (389)
T 3acz_A 117 ---------HWLPRFGIEVDLIDTSDVEKVKAAW----KPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATF 183 (389)
T ss_dssp ---------HHHHHTTCEEEEECTTCHHHHHHTC----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTT
T ss_pred ---------HHHHHcCCEEEEECCCCHHHHHHhc----CCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 0112234445555554555554444 345899999999999999999999999999999999999999
Q ss_pred cccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEecH-HHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848 299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVGTK-NFIDTIRSYAAGFIFTTSLPPTVLAGAREAI 373 (514)
Q Consensus 299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l 373 (514)
+.+..+. +. ..++|+++.|+||+++++ ||++++++ ++++.+......+ +...++..+.++...+
T Consensus 184 ~~~~~~~------~~---~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~--g~~~~~~~~~~~~~~l 252 (389)
T 3acz_A 184 TSPCFLK------PL---ELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDA--GSLMAPMDAFLCARGM 252 (389)
T ss_dssp TCTTTCC------GG---GTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHH
T ss_pred ccccccC------cc---ccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhc--CCCCCHHHHHHHHcCc
Confidence 8554321 11 237899999999999764 48999988 8888887655333 3456777777666666
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHhCC---------C------ccc----cCCCcEEEEEeCCCccHHHHHHHHHHh
Q psy16848 374 RILSSQEGVELRAKHQDIVAYLRNELIQIG---------F------PVE----HTPSHIIPIKIGNPALNTKICDMLLKE 434 (514)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------~------~~~----~~~~~~~~i~l~~~~~~~~~~~~Ll~~ 434 (514)
+.+ ....++..++.+.+.+.|++.+ + .+. ...++++.+.+++ ..+..+.+ ++
T Consensus 253 ~~l-----~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~---~~~~~~~l-~~ 323 (389)
T 3acz_A 253 KTL-----PIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS---FEAAKKLM-EH 323 (389)
T ss_dssp TTH-----HHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS---HHHHHHHH-TT
T ss_pred cHH-----HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC---HHHHHHHH-Hh
Confidence 532 2345556666777777776641 1 111 1236688888864 34455555 58
Q ss_pred CCeEEecc---------cCCCCC--------------CCCcEEEEEeCCCCCHHHHHHHHHHH
Q psy16848 435 KGHYVQPI---------NYPTVP--------------VGEEKIRLAPTPFHTREMIDKFVTDL 474 (514)
Q Consensus 435 ~GI~v~~~---------~~~~~~--------------~~~~~iRl~~~~~~t~e~id~~~~~l 474 (514)
.|+.+... ..|..+ ..++.+|++++...+++.++.+.++|
T Consensus 324 ~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~~~~~li~~l~~al 386 (389)
T 3acz_A 324 LKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQAL 386 (389)
T ss_dssp CSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred CCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHH
Confidence 89888763 222211 12579999999765444444444443
No 181
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.93 E-value=8.3e-25 Score=221.66 Aligned_cols=309 Identities=12% Similarity=0.017 Sum_probs=212.5
Q ss_pred ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhc-cccCCCceEEecCc
Q psy16848 31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL-GKMIPGLHYISDAG 109 (514)
Q Consensus 31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l-~~~~~gd~v~~~~~ 109 (514)
+|++.+++.+.+.... ++..+..+++++.+++++|.+++++++|||+|+..++.++ .+ +||.|+++.+
T Consensus 16 ~~~~~~a~~~~~~~~~---------~~~~~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~~~--~gd~Vi~~~~ 84 (373)
T 3frk_A 16 EYEIKFKFEEIYKRNW---------FILGDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYDIG--FGDEVIVPSN 84 (373)
T ss_dssp HHHHHHHHHHHHHHTC---------CSSSHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTTCC--TTCEEEEETT
T ss_pred CHHHHHHHHHHHHCCC---------ccCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCC--CcCEEEECCC
Confidence 4667777777776521 1334778999999999999999999999999999999888 55 9999999999
Q ss_pred cchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848 110 NHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189 (514)
Q Consensus 110 ~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (514)
+|.++..+++..|++++.++.+. +
T Consensus 85 ~~~~~~~~~~~~g~~~~~~~~~~-~------------------------------------------------------- 108 (373)
T 3frk_A 85 TFIATALAVSYTGAKPIFVEPDI-R------------------------------------------------------- 108 (373)
T ss_dssp SCTHHHHHHHHHSCEEEEECEET-T-------------------------------------------------------
T ss_pred CcHHHHHHHHHcCCEEEEEeccc-c-------------------------------------------------------
Confidence 99999988887777776554320 0
Q ss_pred ccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCC
Q psy16848 190 LYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269 (514)
Q Consensus 190 ~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~ 269 (514)
.. .-|.+.+++ ..++++++|+ ++
T Consensus 109 -----~~---------------------------------------------~~d~~~l~~----~l~~~~~~v~---~~ 131 (373)
T 3frk_A 109 -----TY---------------------------------------------NIDPSLIES----AITEKTKAII---AV 131 (373)
T ss_dssp -----TT---------------------------------------------EECGGGTGG----GCCTTEEEEE---EE
T ss_pred -----cc---------------------------------------------CcCHHHHHH----hcCCCCeEEE---EE
Confidence 00 002233332 3344678877 56
Q ss_pred CCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc--ccccC--CCeEEEec-HHH
Q psy16848 270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG--KAFGN--IGGYIVGT-KNF 344 (514)
Q Consensus 270 nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s--K~lg~--~GG~l~~~-~~~ 344 (514)
||+|...++++|.++|+++|+++|+|++|+.|.. ..+ ...+ ...|++++||+ |++++ .||+++++ +++
T Consensus 132 n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~-~~~----~~~~--~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~ 204 (373)
T 3frk_A 132 HLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSL-YKG----MKVG--SLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDL 204 (373)
T ss_dssp CCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCE-ETT----EETT--SSSSEEEEECCTTSSSCCSSSCEEEEESCHHH
T ss_pred CCCcCcccHHHHHHHHHHcCCEEEEECCcccCCE-ECC----Eecc--ccccEEEEeCcCCCccCccceeEEEEeCCHHH
Confidence 7899999999999999999999999999996653 111 1111 12578888876 99976 34888776 557
Q ss_pred HHHHHhhcCc----------eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccC-C---
Q psy16848 345 IDTIRSYAAG----------FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHT-P--- 410 (514)
Q Consensus 345 ~~~l~~~~~~----------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~--- 410 (514)
.+.++..... .+++..+++..+++....++ .+++..++.+++.+++.+.|+++++.+... .
T Consensus 205 ~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 279 (373)
T 3frk_A 205 AEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLK-----YLDKWNEERRKIAQKYIAGINNPNVIIPVEADYAK 279 (373)
T ss_dssp HHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHH-----THHHHHHHHHHHHHHHHHHCCCTTEECCCCCTTEE
T ss_pred HHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCceEeccCCCCCc
Confidence 6666543321 11233456666665554443 334577888888888888888765333211 1
Q ss_pred Cc--EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC-----------C---------CCcEEEEEeCCCCCHHHHH
Q psy16848 411 SH--IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP-----------V---------GEEKIRLAPTPFHTREMID 468 (514)
Q Consensus 411 ~~--~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~-----------~---------~~~~iRl~~~~~~t~e~id 468 (514)
.. .+.+... +..++.+.|. ++||.++++..+... . ..+.+|++++..+|++|++
T Consensus 280 ~~~~~~~~~~~---~~~~l~~~L~-~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~ 355 (373)
T 3frk_A 280 HVWYTFVIRSE---KRDELQKYLN-NNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIE 355 (373)
T ss_dssp CCCSSEEEEES---SHHHHHHHHH-HTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHH
T ss_pred eeeEEEEEEeC---CHHHHHHHHH-HCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHH
Confidence 11 2334433 4678889995 899999865411110 0 0268999999999999999
Q ss_pred HHHHHHHHHHH
Q psy16848 469 KFVTDLLAVWK 479 (514)
Q Consensus 469 ~~~~~l~~~l~ 479 (514)
+++++|+++..
T Consensus 356 ~~~~~l~~~~~ 366 (373)
T 3frk_A 356 YVIDKINAWKL 366 (373)
T ss_dssp HHHHHHHTCC-
T ss_pred HHHHHHHHHhh
Confidence 99999987543
No 182
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.93 E-value=1.4e-24 Score=220.55 Aligned_cols=224 Identities=17% Similarity=0.187 Sum_probs=169.7
Q ss_pred CChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccC
Q psy16848 243 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHN 319 (514)
Q Consensus 243 ~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~ 319 (514)
.|.+.+++.+++. +++++++.+++|++|.+.| +++|.++|++||+++|+|++++ |.. ++ ... ..+
T Consensus 122 ~d~~~l~~~i~~~---~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g~~-----~~-~~~--~~~ 189 (379)
T 3ke3_A 122 VDIETAVAKIKED---KSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-GCV-----WL-DMK--ELG 189 (379)
T ss_dssp CCHHHHHHHHHHH---TCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-TTC-----CC-CHH--HHT
T ss_pred CCHHHHHHHHhhc---CCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-CCc-----cc-ccc--ccC
Confidence 3667777777532 4788999999999999999 9999999999999999999997 532 11 111 236
Q ss_pred ceEEEcCCcccccC-CC-eEEEecHHHHHHHHhhc-Cce-------------------EeccCCcHHHHHHHHHHHHHhh
Q psy16848 320 MDIISGTLGKAFGN-IG-GYIVGTKNFIDTIRSYA-AGF-------------------IFTTSLPPTVLAGAREAIRILS 377 (514)
Q Consensus 320 ~di~~~S~sK~lg~-~G-G~l~~~~~~~~~l~~~~-~~~-------------------~~~~~~~~~~~~a~~~~l~~~~ 377 (514)
.|++++|+||++++ .| |++++++++++.+.... ..+ .+..+.+...++++.++++.+.
T Consensus 190 ~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~ 269 (379)
T 3ke3_A 190 IDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAK 269 (379)
T ss_dssp CSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHH
T ss_pred CCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 89999999999864 45 89999999988886521 111 1123667888888889999887
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHhCCCccccCC---Cc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCC--CCCC
Q psy16848 378 SQEGVELRAKHQDIVAYLRNELIQIGFPVEHTP---SH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTV--PVGE 451 (514)
Q Consensus 378 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~--~~~~ 451 (514)
++++++++++.+++.+++.+.|+++|+.+..+. .+ +..+..++. ...+.+.| +++||.+.++..|.. +...
T Consensus 270 ~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~L-~~~Gi~v~~g~~~~~~~~~~~ 346 (379)
T 3ke3_A 270 EIGFDILRDAQWELGNRVRKVLTDKGIESVAAEGFEAPGVVVSYTERD--DMHKGSAF-AEAGLQIAAGVPLKVGEPDNF 346 (379)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTCBCSSEEEEECSCH--HHHSSHHH-HHTTCCCEECCCCSSCCCTTC
T ss_pred HhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCccccCceEEEEccCCc--chHHHHHH-HHCCeEEeCCccccccccCcC
Confidence 667888999999999999999999988775443 33 333443321 22235667 589999998876443 3346
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 452 EKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 452 ~~iRl~~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
+.+|++++..+|++|+++++++|+++++++
T Consensus 347 ~~lRis~~~~~t~~di~~~~~~l~~~l~~~ 376 (379)
T 3ke3_A 347 KTFRLGLFGLDKLTDIDGTVERFEKALDEV 376 (379)
T ss_dssp CEEEEECCSHHHHTCHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCcCCCHHHHHHHHHHHHHHHHHh
Confidence 799999998899999999999999998875
No 183
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.93 E-value=1.8e-24 Score=226.27 Aligned_cols=327 Identities=15% Similarity=0.104 Sum_probs=224.9
Q ss_pred CChhHHHHHHHHHHHhCCCCCCcC-cccCcchHHHHHHHHHHhHcCCCcEEEE-eccccccccchhhccc--cCCCc---
Q psy16848 30 VPKGGRKCLGEALEKFGTGAGGTR-NISGNSLFHEKLEEDVAKLHQKEAGLVF-TSCYVANDSTLFTLGK--MIPGL--- 102 (514)
Q Consensus 30 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~i~~-~sGt~a~~~~l~~l~~--~~~gd--- 102 (514)
.+|++.+++.+.+.. .+...+. ...|..++.+++++++++++|.+..+++ ++|++|+..++.++.. ..+||
T Consensus 78 ~~p~v~~~~~~~~~~--~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~ 155 (474)
T 1wyu_B 78 YNPKLHEEAARLFAD--LHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRT 155 (474)
T ss_dssp CCCHHHHHHHHTTSS--CCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred CCHHHHHHHHHHHHh--cCCCCchhhChHHHHHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCccC
Confidence 368888777765211 1111111 2345568889999999999998876544 6678888776655421 23777
Q ss_pred --eEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceE
Q psy16848 103 --HYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALT 180 (514)
Q Consensus 103 --~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (514)
.|+++.+.|.+...+++..|.+++.++.++ +
T Consensus 156 r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~-~---------------------------------------------- 188 (474)
T 1wyu_B 156 RRVVLVPDSAHGSNPATASMAGYQVREIPSGP-E---------------------------------------------- 188 (474)
T ss_dssp CCEEEEETTSCTHHHHHHHHTTCEEEEECBCT-T----------------------------------------------
T ss_pred CCEEEEeCCcChhhHHHHHHCCCEEEEecCCC-C----------------------------------------------
Confidence 999999999998877777777666554310 0
Q ss_pred EeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCc
Q psy16848 181 FVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP 260 (514)
Q Consensus 181 ~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~ 260 (514)
| .-|.+.+++.+ ++++
T Consensus 189 ----------------~--------------------------------------------~~d~~~L~~~i----~~~t 204 (474)
T 1wyu_B 189 ----------------G--------------------------------------------EVDLEALKREL----GPHV 204 (474)
T ss_dssp ----------------S--------------------------------------------SBCHHHHHHHC----STTE
T ss_pred ----------------C--------------------------------------------CcCHHHHHHhh----CCCc
Confidence 0 00344444444 3458
Q ss_pred eEEEEecCCCCCccc-cCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCC-----
Q psy16848 261 KLVAFETVHSMTGAI-CPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----- 334 (514)
Q Consensus 261 ~~vv~~~~~nptG~~-~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----- 334 (514)
++|+++++ |++|.+ .++++|.++|++||+++|+|++|+.+..+.. ... ..++|++++|+||+++.+
T Consensus 205 ~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~-----~~~--~~g~di~~~s~~K~~~~p~g~gG 276 (474)
T 1wyu_B 205 AALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWA-----RPG--DMGFDVVHLNLHKTFTVPHGGGG 276 (474)
T ss_dssp EEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTC-----CHH--HHTCSEEECCTTTTTCCCCTTSC
T ss_pred eEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccCC-----Ccc--cCCCcEEEEeCccccccCCCCCC
Confidence 89999997 689998 5899999999999999999999986554311 111 236899999999998643
Q ss_pred -C-eEEEecHHHHHHHHh-hc----CceEe------------ccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy16848 335 -G-GYIVGTKNFIDTIRS-YA----AGFIF------------TTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYL 395 (514)
Q Consensus 335 -G-G~l~~~~~~~~~l~~-~~----~~~~~------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 395 (514)
| |++++++++++.+.. .. ..+.+ +.+.+...+.++...++.+..+++++..+++.++++++
T Consensus 277 ~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l 356 (474)
T 1wyu_B 277 PGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYL 356 (474)
T ss_dssp CCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 899999888766641 10 01110 12346666777777776554566777889999999999
Q ss_pred HHHHHhCCCccccCCCcE--EEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Q psy16848 396 RNELIQIGFPVEHTPSHI--IPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTD 473 (514)
Q Consensus 396 ~~~L~~~g~~~~~~~~~~--~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~ 473 (514)
.+.|++.|+++..+...+ +.+.++...+..++.+.|+ ++||.+ ++..+. ....+++|++++..+|++++++++++
T Consensus 357 ~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~Gi~~-~~~~~~-~~~~~~lRis~~~~~t~e~id~~~~~ 433 (474)
T 1wyu_B 357 KELLKEKGYRVPYDGPSMHEFVAQPPEGFRALDLAKGLL-ELGFHP-PTVYFP-LIVKEALMVEPTETEAKETLEAFAEA 433 (474)
T ss_dssp HHHHHHTTCBCSSCSSCCSCEEEBCSTTCCHHHHHHHHH-HTTCCC-CEESCS-TTSTTCEEECCCTTSCHHHHHHHHHH
T ss_pred HHHHhhcCcEecCCCCcceEEEEEcCCCCCHHHHHHHHH-HCCccc-cccccc-cccCCEEEEEeecCCCHHHHHHHHHH
Confidence 999998877663222222 4455543456788999996 789986 333211 12357899999988899999999999
Q ss_pred HHHHHHH
Q psy16848 474 LLAVWKS 480 (514)
Q Consensus 474 l~~~l~~ 480 (514)
|++++++
T Consensus 434 L~~~~~~ 440 (474)
T 1wyu_B 434 MGALLKK 440 (474)
T ss_dssp HHHHHTS
T ss_pred HHHHHHh
Confidence 9998765
No 184
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.93 E-value=1.5e-24 Score=219.63 Aligned_cols=321 Identities=15% Similarity=0.124 Sum_probs=219.0
Q ss_pred eeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhc-cc
Q psy16848 19 VTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL-GK 97 (514)
Q Consensus 19 ~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l-~~ 97 (514)
.++|+..+...-.+ +.+++.+.+.... ++..+...++++.++++++.+++++++|||+|+..++.++ ..
T Consensus 7 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~---------~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~~~~~~ 76 (374)
T 3uwc_A 7 PYSYLERQFADIEP-YLNDLREFIKTAD---------FTLGAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLNIG 76 (374)
T ss_dssp CSCCHHHHTSSCHH-HHHHHHHHHHHTC---------CSSCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCC
T ss_pred eeeccccCCCCchH-HHHHHHHHHHcCC---------cccChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCC
Confidence 34555433322234 7777777776521 1234678999999999999999999999999999999888 65
Q ss_pred cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcC
Q psy16848 98 MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHG 177 (514)
Q Consensus 98 ~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (514)
+||.|+++.++|.+...+++..|.+++.++.++. +
T Consensus 77 --~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---------------------------~---------------- 111 (374)
T 3uwc_A 77 --AGDEVITCANTFIASVGAIVQAGATPVLVDSENG---------------------------Y---------------- 111 (374)
T ss_dssp --TTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTT---------------------------S----------------
T ss_pred --CCCEEEECCCccHHHHHHHHHcCCEEEEEecCCC---------------------------C----------------
Confidence 9999999999999999888877777766544200 0
Q ss_pred ceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccC
Q psy16848 178 ALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV 257 (514)
Q Consensus 178 ~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~ 257 (514)
.-|.+.+++ ..+
T Consensus 112 ----------------------------------------------------------------~~d~~~l~~----~~~ 123 (374)
T 3uwc_A 112 ----------------------------------------------------------------VIDPEKIEA----AIT 123 (374)
T ss_dssp ----------------------------------------------------------------SBCGGGTGG----GCC
T ss_pred ----------------------------------------------------------------CcCHHHHHH----hCC
Confidence 002333332 233
Q ss_pred CCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc--ccccCC-
Q psy16848 258 KIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG--KAFGNI- 334 (514)
Q Consensus 258 ~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s--K~lg~~- 334 (514)
+++++++ ++||+|...++++|.++|++||+++|+|++|+.|..- .+ ...+ ...|++++|+| |++++.
T Consensus 124 ~~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~-~~----~~~~--~~~d~~~~s~~~~K~l~~~g 193 (374)
T 3uwc_A 124 DKTKAIM---PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGRI-ND----KFVG--SWGQFACFSLHPLKNLNVWS 193 (374)
T ss_dssp TTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEE-TT----EETT--SSSSEEEEECSSSSSSCCSS
T ss_pred CCceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCcee-CC----eecc--ccccEEEEeCCCCCcCCccc
Confidence 4577777 7889999999999999999999999999999965421 00 1111 12588888977 999773
Q ss_pred -CeEEEec-HHHHHHHHhhcCce----------EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848 335 -GGYIVGT-KNFIDTIRSYAAGF----------IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI 402 (514)
Q Consensus 335 -GG~l~~~-~~~~~~l~~~~~~~----------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 402 (514)
||+++++ +++.+.+....... +++..++...+++....+ +.+++..++.+++.+++.+.|++.
T Consensus 194 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~-----~~~~~~~~~~~~~~~~l~~~l~~~ 268 (374)
T 3uwc_A 194 DAGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLM-----NQLETITEKRRGIAHLYDQSFVDL 268 (374)
T ss_dssp CCEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHG-----GGHHHHHHHHHHHHHHHHHHTGGG
T ss_pred eeEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccC
Confidence 4887765 46766666543211 112233444444433322 345567888889999999999887
Q ss_pred C--CccccC-CC---c--EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCC--------------------CCcEE
Q psy16848 403 G--FPVEHT-PS---H--IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV--------------------GEEKI 454 (514)
Q Consensus 403 g--~~~~~~-~~---~--~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~--------------------~~~~i 454 (514)
+ +.+... .+ . .+.+..+ +..++.+.|. ++||.++++....... ..+.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~L~-~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 344 (374)
T 3uwc_A 269 SEFIDVPVRREGVYHVFHIYVLRVK---YRDQLFQYLK-DNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVI 344 (374)
T ss_dssp TTTEECCCCCTTEECCCSSEEEEET---THHHHHHHHH-HTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEE
T ss_pred CCeEEeccCCCCCceeeEEEEEEcC---CHHHHHHHHH-HCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEE
Confidence 3 544321 11 1 2334433 4678889995 8999998765111000 12789
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 455 RLAPTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 455 Rl~~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
|++++..+|++|+++++++|++++++.
T Consensus 345 rl~~~~~~t~edi~~~~~~l~~~l~~~ 371 (374)
T 3uwc_A 345 TLPAHPYLTEEEINYIIKKVREFYLEK 371 (374)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred EccCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998764
No 185
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.93 E-value=1.1e-23 Score=216.91 Aligned_cols=321 Identities=16% Similarity=0.142 Sum_probs=224.0
Q ss_pred ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhc-cccCCCceEEecCc
Q psy16848 31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL-GKMIPGLHYISDAG 109 (514)
Q Consensus 31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l-~~~~~gd~v~~~~~ 109 (514)
+|++.+++.++++....+ .+....|..++.+++++.+++++|.++.++++|||+|+..++.++ .. +||.|+++.+
T Consensus 15 ~~~~~~a~~~~~~~~~~~--~~~~~~g~~~l~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~~~--~gd~Vl~~~~ 90 (418)
T 2c81_A 15 SDRTRRKIEEVFQSNRWA--ISGYWTGEESMERKFAKAFADFNGVPYCVPTTSGSTALMLALEALGIG--EGDEVIVPSL 90 (418)
T ss_dssp CHHHHHHHHHHHHHTCCS--TTSBCCSSCCHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCC--TTCEEEEESS
T ss_pred CHHHHHHHHHHHhcCCcc--ccCcccCCHHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCC--CcCEEEECCC
Confidence 689999999999874222 122345667789999999999999998999999999999999888 55 9999999999
Q ss_pred cchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848 110 NHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189 (514)
Q Consensus 110 ~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (514)
+|.+...+++..|.+++.++.+.
T Consensus 91 ~~~~~~~~~~~~g~~~~~~~~~~--------------------------------------------------------- 113 (418)
T 2c81_A 91 TWIATATAVLNVNALPVFVDVEA--------------------------------------------------------- 113 (418)
T ss_dssp SCTHHHHHHHHTTCEEEEECBCT---------------------------------------------------------
T ss_pred ccHhHHHHHHHcCCEEEEEecCC---------------------------------------------------------
Confidence 99999888877777666554310
Q ss_pred ccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCC
Q psy16848 190 LYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269 (514)
Q Consensus 190 ~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~ 269 (514)
+++..+.+.+++..++++++|+++
T Consensus 114 -----------------------------------------------------~~~~~d~~~l~~~i~~~~~~v~~~--- 137 (418)
T 2c81_A 114 -----------------------------------------------------DTYCIDPQLIKSAITDKTKAIIPV--- 137 (418)
T ss_dssp -----------------------------------------------------TTCSBCHHHHGGGCCTTEEEECCB---
T ss_pred -----------------------------------------------------CCCCcCHHHHHHhhCCCCeEEEEe---
Confidence 011122233444444568888764
Q ss_pred CCCccccCHHHHHHHHHHcCCEEEEeccccccc-cCCCCCCccccCCCccCceEEEcCC--cccccC-CCeEEEec-HHH
Q psy16848 270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGL-YGEHGAGIGERDGQLHNMDIISGTL--GKAFGN-IGGYIVGT-KNF 344 (514)
Q Consensus 270 nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~-~g~~~~~~~~~~~~~~~~di~~~S~--sK~lg~-~GG~l~~~-~~~ 344 (514)
||+|...++++|.++|+++|+++|+|++|+.+. .. +..+ .. -.|+++.|| ||++++ .||+++++ +++
T Consensus 138 ~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~--~~~~---~~---~~~~~~~s~s~~K~~~~g~~g~~~~~~~~l 209 (418)
T 2c81_A 138 HLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWN--NQRA---GT---IGDIGAFSCQQGKVLTAGEGGIIVTKNPRL 209 (418)
T ss_dssp CCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEET--TEET---TS---SSSEEEEECCTTSSSCSSSCEEEEESCHHH
T ss_pred CCcCCcccHHHHHHHHHHCCCEEEEECcccccCccC--CEec---cc---ccceEEEeccCCcccCCCCeEEEEECCHHH
Confidence 578999999999999999999999999999664 21 1111 11 124555566 999987 33888884 788
Q ss_pred HHHHHhhcCceE------------ec------------cCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q psy16848 345 IDTIRSYAAGFI------------FT------------TSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI 400 (514)
Q Consensus 345 ~~~l~~~~~~~~------------~~------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 400 (514)
++.+........ +. ..++....+.....+ +.+++..++.+++.+++.+.|.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l-----~~~~~~~~~~~~~~~~l~~~L~ 284 (418)
T 2c81_A 210 FELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQL-----QELDDKNAIREKNAMFLNDALS 284 (418)
T ss_dssp HHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 777765332211 11 012333222222222 3455677888888999999998
Q ss_pred hC-CCccc-cCCC----c--EEEEEeCC----CccHHHHHHHHHHhC-CeE---EecccCCCCC----------------
Q psy16848 401 QI-GFPVE-HTPS----H--IIPIKIGN----PALNTKICDMLLKEK-GHY---VQPINYPTVP---------------- 448 (514)
Q Consensus 401 ~~-g~~~~-~~~~----~--~~~i~l~~----~~~~~~~~~~Ll~~~-GI~---v~~~~~~~~~---------------- 448 (514)
++ ++.+. .+.+ . ++.+.+++ +.+..++.+.|. ++ ||. ++++..|...
T Consensus 285 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~ 363 (418)
T 2c81_A 285 KIDGIKVMKRPPQVSRQTYYGYVFRFDPVKFGGLNADQFCEILR-EKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSV 363 (418)
T ss_dssp TSTTEEECCCCTTEEECCCSEEEEEECGGGTTTCCHHHHHHHHH-HHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHH
T ss_pred cCCCcccCCCCCCCcccccEEEEEEEccccccccCHHHHHHHHH-HcCCCCcccccccccccccCchhcccccccccccc
Confidence 87 77665 3333 2 44467763 346788999996 77 999 8876532100
Q ss_pred ---------CC--------CcEEEEEeCCCC-CHHHHHHHHHHHHHHHHHcC
Q psy16848 449 ---------VG--------EEKIRLAPTPFH-TREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 449 ---------~~--------~~~iRl~~~~~~-t~e~id~~~~~l~~~l~~~~ 482 (514)
.. .+.+|++++..+ |++|+++++++|+++++++.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~~ 415 (418)
T 2c81_A 364 RKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKFC 415 (418)
T ss_dssp HCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTTC
T ss_pred cccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhhc
Confidence 00 258999999999 99999999999999988754
No 186
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.8e-24 Score=226.31 Aligned_cols=335 Identities=11% Similarity=0.036 Sum_probs=233.8
Q ss_pred CChhHHHHHHHHHHHhCCCCC-CcCcccCcchHHHHHHHHHHhHcCCC----cEEEEeccccccccchhhccc---cCCC
Q psy16848 30 VPKGGRKCLGEALEKFGTGAG-GTRNISGNSLFHEKLEEDVAKLHQKE----AGLVFTSCYVANDSTLFTLGK---MIPG 101 (514)
Q Consensus 30 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~----~~i~~~sGt~a~~~~l~~l~~---~~~g 101 (514)
+++.+.+++.+++..+..... .+....+..++.+++++++++++|.+ .+++++|||+|+..++.++.. ..+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g 155 (497)
T 3mc6_A 76 GGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRG 155 (497)
T ss_dssp CCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSC
T ss_pred CchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCC
Confidence 467899999999988654322 12222244567778889999999876 467778889999999887743 1134
Q ss_pred ---ceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCc
Q psy16848 102 ---LHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGA 178 (514)
Q Consensus 102 ---d~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (514)
|.|+++.+.|.+...+++..|.+++.++.++ +
T Consensus 156 ~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~-~-------------------------------------------- 190 (497)
T 3mc6_A 156 ITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDP-T-------------------------------------------- 190 (497)
T ss_dssp CSSCEEEEETTSCHHHHHHHHHSCCEEEEECBCT-T--------------------------------------------
T ss_pred CCCceEEEeCCccHHHHHHHHHcCCeEEEEecCc-c--------------------------------------------
Confidence 8999999999999988888888776554321 0
Q ss_pred eEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCC
Q psy16848 179 LTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVK 258 (514)
Q Consensus 179 ~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~ 258 (514)
.+ .-|.+.++ +...+
T Consensus 191 -----------------~~--------------------------------------------~~d~~~l~----~~i~~ 205 (497)
T 3mc6_A 191 -----------------TY--------------------------------------------QVDLGKVK----KFINK 205 (497)
T ss_dssp -----------------TC--------------------------------------------SBCTTTTG----GGCCS
T ss_pred -----------------cC--------------------------------------------cCCHHHHH----HHHhh
Confidence 00 00233333 33345
Q ss_pred CceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecccccccc---CCCCCCcc-ccCCCccCceEEEcCCcccc-cC
Q psy16848 259 IPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY---GEHGAGIG-ERDGQLHNMDIISGTLGKAF-GN 333 (514)
Q Consensus 259 ~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~---g~~~~~~~-~~~~~~~~~di~~~S~sK~l-g~ 333 (514)
++++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+.. ...+.+.. +......+.|+++.|+||++ ++
T Consensus 206 ~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~ 285 (497)
T 3mc6_A 206 NTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAP 285 (497)
T ss_dssp SEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCC
T ss_pred CCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCC
Confidence 689999999999999999999999999999999999999983221 11111111 12222346899999999997 44
Q ss_pred CC-eEEEecHHHHHHHHhhc-Cce--------EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-
Q psy16848 334 IG-GYIVGTKNFIDTIRSYA-AGF--------IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI- 402 (514)
Q Consensus 334 ~G-G~l~~~~~~~~~l~~~~-~~~--------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 402 (514)
.| |+++.+++.+....... ..+ .+..+.+....++..++++.+...++.+..++..++++++.+.|++.
T Consensus 286 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~ 365 (497)
T 3mc6_A 286 KGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENI 365 (497)
T ss_dssp SSCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45 88888766554332111 110 01112334445556666766666677888999999999999999994
Q ss_pred -CCcccc-CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848 403 -GFPVEH-TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS 480 (514)
Q Consensus 403 -g~~~~~-~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~ 480 (514)
|+.+.. +.++++.+..+. .+..++.+.|. ++||.+..+.. ...+|++++ .+|++++++++++|++++++
T Consensus 366 ~g~~~~~~~~~~~v~~~~~~-~~~~~l~~~L~-~~Gi~v~~~~~------~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~ 436 (497)
T 3mc6_A 366 PDLDIMGNPRYSVISFSSKT-LNIHELSDRLS-KKGWHFNALQK------PVALHMAFT-RLSAHVVDEICDILRTTVQE 436 (497)
T ss_dssp TTCEECSCCCSSEEEEECTT-TTHHHHHHHHH-TTTCBCEECCS------SCCEEEECC-TTTTCTHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCeeEEEEeCCC-CCHHHHHHHHH-hCCEEEecCCC------CCeEEEEEe-CCCHHHHHHHHHHHHHHHHH
Confidence 887763 456677776543 45788999996 89998875443 236899998 78999999999999999988
Q ss_pred cCC
Q psy16848 481 LDL 483 (514)
Q Consensus 481 ~~~ 483 (514)
+..
T Consensus 437 ~~~ 439 (497)
T 3mc6_A 437 LKS 439 (497)
T ss_dssp HTC
T ss_pred HHh
Confidence 754
No 187
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.93 E-value=1.4e-23 Score=215.72 Aligned_cols=282 Identities=15% Similarity=0.127 Sum_probs=198.2
Q ss_pred chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848 59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ 138 (514)
Q Consensus 59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~ 138 (514)
.+..+++++++++++|.+++++++||++|+..++.++.. +||+|+++.+.|.++...+..
T Consensus 55 ~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~al~~l~~--~gd~vi~~~~~~~~~~~~~~~------------------ 114 (412)
T 2cb1_A 55 DPTAKALEERLKALEGALEAVVLASGQAATFAALLALLR--PGDEVVAAKGLFGQTIGLFGQ------------------ 114 (412)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCC--TTCEEEEETTCCHHHHHHHHH------------------
T ss_pred ChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCchhHHHHHHH------------------
Confidence 467899999999999999899999999999999988865 999999999999887654321
Q ss_pred HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848 139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP 218 (514)
Q Consensus 139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~ 218 (514)
T Consensus 115 -------------------------------------------------------------------------------- 114 (412)
T 2cb1_A 115 -------------------------------------------------------------------------------- 114 (412)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848 219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH 298 (514)
Q Consensus 219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~ 298 (514)
.+...|.+++.++.+ .+.+++.+ ++++++|++++++||+|.+.|+++|.++|++||+++|+|++|
T Consensus 115 ----------~~~~~g~~~~~~~~~-~~~l~~~i----~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~ 179 (412)
T 2cb1_A 115 ----------VLSLMGVTVRYVDPE-PEAVREAL----SAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTF 179 (412)
T ss_dssp ----------TTTTTTCEEEEECSS-HHHHHHHC----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGG
T ss_pred ----------HHHHcCCEEEEECCC-HHHHHHHh----ccCCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCC
Confidence 011123344444432 33333333 456899999999999999999999999999999999999999
Q ss_pred ccc-ccCCCCCCccccCCCccCceEEEcCCcccccCCC---eEE-EecH---------------------------HHHH
Q psy16848 299 AVG-LYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYI-VGTK---------------------------NFID 346 (514)
Q Consensus 299 ~~g-~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l-~~~~---------------------------~~~~ 346 (514)
+.+ ... .....++|++++|+||+++++| |++ +.++ ++.+
T Consensus 180 ~~~~~~~---------~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 250 (412)
T 2cb1_A 180 GAAGALC---------RPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPE 250 (412)
T ss_dssp GTTTTSC---------CGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHH
T ss_pred ccccccC---------CccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHH
Confidence 855 211 1112378999999999997533 444 4442 3444
Q ss_pred HHHhhc-CceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc--c--------------
Q psy16848 347 TIRSYA-AGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE--H-------------- 408 (514)
Q Consensus 347 ~l~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~-------------- 408 (514)
.++... ... +...++..++.+...++.+ .+..++..++.+++.+.|.+. ++..+ +
T Consensus 251 ~~r~~~~~~~--g~~~~~~~a~~~~~~l~~l-----~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~ 323 (412)
T 2cb1_A 251 RVRTLGLSLC--GMALSPFNAYLLFQGLETV-----ALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKY 323 (412)
T ss_dssp HHHHHHTTTT--CCCCCHHHHHHHHHHGGGH-----HHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHH
T ss_pred HHHHHHHHhc--CCCCChHHhHHHHcCCchH-----HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHh
Confidence 444432 222 2244566555555544432 345666778889999999886 66533 1
Q ss_pred --CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEeccc---------CCCCCC--------------CCcEEEEEeCCCCC
Q psy16848 409 --TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPIN---------YPTVPV--------------GEEKIRLAPTPFHT 463 (514)
Q Consensus 409 --~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~---------~~~~~~--------------~~~~iRl~~~~~~t 463 (514)
..++++.+.+ . +...+.+.+ ++.||.+ .++ .|.... .++.+|++++..++
T Consensus 324 ~~~~~~iv~~~~-~--~~~~~~~~l-~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~ 398 (412)
T 2cb1_A 324 LASGGPILTLDL-G--DLERASRFL-GAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDP 398 (412)
T ss_dssp CSSSCSEEEEEC-S--SHHHHHHHH-HHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCH
T ss_pred CCCCceEEEEEe-C--CHHHHHHHH-HhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCH
Confidence 2355888888 3 355666666 6899998 663 332111 15799999999999
Q ss_pred HHHHHHHHHHHHH
Q psy16848 464 REMIDKFVTDLLA 476 (514)
Q Consensus 464 ~e~id~~~~~l~~ 476 (514)
+++++.+.++|++
T Consensus 399 ~~~i~~l~~al~~ 411 (412)
T 2cb1_A 399 LDLLALFEEALEA 411 (412)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998864
No 188
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.93 E-value=1.6e-24 Score=221.71 Aligned_cols=327 Identities=14% Similarity=0.095 Sum_probs=226.5
Q ss_pred ceeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhc-c
Q psy16848 18 RVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL-G 96 (514)
Q Consensus 18 ~~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l-~ 96 (514)
..++|+..+...-.|++.+++.+++.... ++..+...++++.++++++.++.++++||++|+..++.++ .
T Consensus 30 ~~~id~~~~~~~~~~~v~~a~~~~~~~~~---------y~~~~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~~~~~ 100 (399)
T 2oga_A 30 VPFLDLKAAYEELRAETDAAIARVLDSGR---------YLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGI 100 (399)
T ss_dssp BCSCCHHHHHHHTHHHHHHHHHHHHHHTC---------CSSSHHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHHTTC
T ss_pred CcccccCcCCCCCCHHHHHHHHHHHhcCC---------CCCchhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHHHhCC
Confidence 35677754332223889999998887511 1223667899999999999988999999999999999888 5
Q ss_pred ccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhc
Q psy16848 97 KMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH 176 (514)
Q Consensus 97 ~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (514)
. +||.|+++.+.|.+...+++..|.+++.++.+. +
T Consensus 101 ~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~------------------------------------------ 135 (399)
T 2oga_A 101 G--PGDEVIVPSHTYIASWLAVSATGATPVPVEPHE-D------------------------------------------ 135 (399)
T ss_dssp C--TTCEEEEESSSCTHHHHHHHHTTCEEEEECBCS-S------------------------------------------
T ss_pred C--CcCEEEECCCccHHHHHHHHHCCCEEEEEecCC-C------------------------------------------
Confidence 5 999999999999998888777777666543210 0
Q ss_pred CceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhcc
Q psy16848 177 GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD 256 (514)
Q Consensus 177 ~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~ 256 (514)
.. ..|.+.+++.+.
T Consensus 136 ------------------~~---------------------------------------------~~d~~~l~~~i~--- 149 (399)
T 2oga_A 136 ------------------HP---------------------------------------------TLDPLLVEKAIT--- 149 (399)
T ss_dssp ------------------SS---------------------------------------------SBCHHHHHHHCC---
T ss_pred ------------------CC---------------------------------------------CcCHHHHHHhcC---
Confidence 00 013444444443
Q ss_pred CCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCC--cccccCC
Q psy16848 257 VKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL--GKAFGNI 334 (514)
Q Consensus 257 ~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~--sK~lg~~ 334 (514)
+++++|+ ++||+|.+.++++|.++|+++|+++|+|++|+.|... .+. . .+ .-.|++++|+ +|++++.
T Consensus 150 -~~~~~v~---~~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~-~~~---~-~~--~~~di~~~S~~~sK~~~~~ 218 (399)
T 2oga_A 150 -PRTRALL---PVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARY-RGR---R-IG--AGSSVAAFSFYPGKNLGCF 218 (399)
T ss_dssp -TTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEE-TTE---E-TT--CTTCEEEEECCTTSSSCCS
T ss_pred -CCCeEEE---EeCCcCCccCHHHHHHHHHHcCCEEEEECcccccCcc-CCe---e-cc--cccCEEEEeCCCCccCCcC
Confidence 3577777 4678999999999999999999999999999966421 111 1 11 1258999999 6999874
Q ss_pred --CeEEEec-HHHHHHHHhhcCce----------EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848 335 --GGYIVGT-KNFIDTIRSYAAGF----------IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ 401 (514)
Q Consensus 335 --GG~l~~~-~~~~~~l~~~~~~~----------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 401 (514)
||+++.+ +++++.+....... +++...++..++++.++++.+ ++..++.+++.+++.+.|++
T Consensus 219 G~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~-----~~~~~~~~~~~~~l~~~L~~ 293 (399)
T 2oga_A 219 GDGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHL-----DSWNGRRSALAAEYLSGLAG 293 (399)
T ss_dssp SCCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTH-----HHHHHHHHHHHHHHHHHTTT
T ss_pred CceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcc
Confidence 4888875 78887776543211 122356778787777777644 23566677788888888888
Q ss_pred C-CCcccc-C-CCc--EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC-----------C---------CCcEEEE
Q psy16848 402 I-GFPVEH-T-PSH--IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP-----------V---------GEEKIRL 456 (514)
Q Consensus 402 ~-g~~~~~-~-~~~--~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~-----------~---------~~~~iRl 456 (514)
+ ++.+.. + .+. ++.+.+.. .+..++.+.|. ++||.++++...... . ..+++|+
T Consensus 294 ~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~L~-~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi 371 (399)
T 2oga_A 294 LPGIGLPVTAPDTDPVWHLFTVRT-ERRDELRSHLD-ARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSL 371 (399)
T ss_dssp CTTCBCCCCCTTEECCCSSEEEEC-SSHHHHHHHHH-HTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEE
T ss_pred CCCccccCCCCCCcceeEEEEEEC-CCHHHHHHHHH-HCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEc
Confidence 6 665532 2 222 21133221 24678999995 899999864310000 0 0268999
Q ss_pred EeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848 457 APTPFHTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 457 ~~~~~~t~e~id~~~~~l~~~l~~~~ 482 (514)
+++..+|++|+++++++|+++++++.
T Consensus 372 ~~~~~~t~edi~~~~~~l~~~~~~l~ 397 (399)
T 2oga_A 372 PIGPHLERPQALRVIDAVREWAERVD 397 (399)
T ss_dssp CCSTTCCHHHHHHHHHHHHHHHHSCC
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988653
No 189
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.93 E-value=1.8e-24 Score=227.58 Aligned_cols=334 Identities=13% Similarity=0.067 Sum_probs=230.6
Q ss_pred ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC-------cEEEEeccccccccchhhcccc-----
Q psy16848 31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE-------AGLVFTSCYVANDSTLFTLGKM----- 98 (514)
Q Consensus 31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-------~~i~~~sGt~a~~~~l~~l~~~----- 98 (514)
+|.+.+++.+.+......+.. ..+..++.+++++++++++|.+ .++++++||+|+..++.++...
T Consensus 69 ~~~v~~~l~~~~~~~~~~~~~---~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~ 145 (502)
T 3hbx_A 69 EPECDKLIMSSINKNYVDMDE---YPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKR 145 (502)
T ss_dssp CHHHHHHHHHTTTCBTTCTTT---CHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCChhc---ChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHH
Confidence 678888887766542222211 1123566778888999999987 3456889999998888776541
Q ss_pred -CCCc-----eEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848 99 -IPGL-----HYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV 172 (514)
Q Consensus 99 -~~gd-----~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
.+|+ .|+++.+.|.++..+++..|.+++.++.++..
T Consensus 146 ~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~-------------------------------------- 187 (502)
T 3hbx_A 146 KAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGY-------------------------------------- 187 (502)
T ss_dssp HHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCBTTB--------------------------------------
T ss_pred HhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecCCCc--------------------------------------
Confidence 1266 89999999999888888777766654431000
Q ss_pred hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848 173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL 252 (514)
Q Consensus 173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l 252 (514)
+ .-|.+.+++.+
T Consensus 188 ------------------------~--------------------------------------------~~d~~~l~~~i 199 (502)
T 3hbx_A 188 ------------------------Y--------------------------------------------VMDPQQAVDMV 199 (502)
T ss_dssp ------------------------C--------------------------------------------SCCHHHHHHHC
T ss_pred ------------------------C--------------------------------------------cCCHHHHHHHH
Confidence 0 00333333333
Q ss_pred hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHc------CCEEEEeccccccc---cCCCCCCccccCCCccCceEE
Q psy16848 253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH------GALTFVDEVHAVGL---YGEHGAGIGERDGQLHNMDII 323 (514)
Q Consensus 253 ~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~------gv~li~Dea~~~g~---~g~~~~~~~~~~~~~~~~di~ 323 (514)
.+++++|++++++||+|.+.|+++|.++|+++ |+++++|++|+.+. ....... ... ..+.|++
T Consensus 200 ----~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~---~~~-~~~~D~v 271 (502)
T 3hbx_A 200 ----DENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEW---DFR-LPLVKSI 271 (502)
T ss_dssp ----CTTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCC---STT-STTEEEE
T ss_pred ----hhCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCccccc---ccC-CCCceEE
Confidence 45688999999999999999999999999999 99999999998443 1222110 111 3478999
Q ss_pred EcCCccccc-CCC-eEEEec-HHHHHHHHhhcCc--------eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q psy16848 324 SGTLGKAFG-NIG-GYIVGT-KNFIDTIRSYAAG--------FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIV 392 (514)
Q Consensus 324 ~~S~sK~lg-~~G-G~l~~~-~~~~~~l~~~~~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 392 (514)
.+|.||+++ +.| |+++.+ ++.+......... +.+..+.+.....+..+++..+..+++.++.++..+++
T Consensus 272 ~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a 351 (502)
T 3hbx_A 272 NVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENM 351 (502)
T ss_dssp EEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECcccccCCCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999984 445 766554 4444222111111 11112223334455556666655567778899999999
Q ss_pred HHHHHHHHhCC-CccccC--CCcEEEEEeCCC--ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHH
Q psy16848 393 AYLRNELIQIG-FPVEHT--PSHIIPIKIGNP--ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI 467 (514)
Q Consensus 393 ~~l~~~L~~~g-~~~~~~--~~~~~~i~l~~~--~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~i 467 (514)
+++.+.|++.+ +.+..+ ..+++.+.+++. .+..++.+.|. ++||.+.....+....+..++|++++..+|++++
T Consensus 352 ~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edi 430 (502)
T 3hbx_A 352 IVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLR-RYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLA 430 (502)
T ss_dssp HHHHHHHHTTTCEEECSCSSSSSEEEEEESSCSSCCHHHHHHHHH-TTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHH
T ss_pred HHHHHHHHhCCCEEEEeCCCCceEEEEEecCCCcCCHHHHHHHHH-hCCcEEeeccCCcccCCceEEEEEeCCCCCHHHH
Confidence 99999999984 777654 567888888642 34568999995 9999987655544444567999999999999999
Q ss_pred HHHHHHHHHHHHHcC
Q psy16848 468 DKFVTDLLAVWKSLD 482 (514)
Q Consensus 468 d~~~~~l~~~l~~~~ 482 (514)
+++++.|++++++++
T Consensus 431 d~li~~L~~~l~~l~ 445 (502)
T 3hbx_A 431 ERLVIDIEKVMRELD 445 (502)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988764
No 190
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.93 E-value=1.9e-24 Score=226.48 Aligned_cols=342 Identities=15% Similarity=0.145 Sum_probs=228.3
Q ss_pred eeeecccCCCCCChhHHHHHHHHHHH-hCCCCCCcCcccCc---chHHHHHHHHHHhHcCCCc-----EEEEeccccccc
Q psy16848 19 VTCRLSSVQYKVPKGGRKCLGEALEK-FGTGAGGTRNISGN---SLFHEKLEEDVAKLHQKEA-----GLVFTSCYVAND 89 (514)
Q Consensus 19 ~~~d~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~~-----~i~~~sGt~a~~ 89 (514)
..|++....-..+|.+.+++.+.+.. |..+++++++..+. .++.+.+++++++++|.+. .++++||++++.
T Consensus 45 ~~i~L~a~e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~ 124 (483)
T 1rv3_A 45 VGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANF 124 (483)
T ss_dssp SSEECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHH
T ss_pred cCeEEEcCCCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcHHHHH
Confidence 34665332223478899998888764 22122222222221 3444556699999999763 378899998888
Q ss_pred cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848 90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL 169 (514)
Q Consensus 90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
.++.++.+ |||+|+++++.|.+.+..........+.
T Consensus 125 ~~~~all~--pGD~Vl~~~~~~~~~~~~~~~~~~~~v~------------------------------------------ 160 (483)
T 1rv3_A 125 AVYTALVE--PHGRIMGLDLPDGGHLTHGFMTDKKKIS------------------------------------------ 160 (483)
T ss_dssp HHHHHHTC--TTCEEEEECGGGTCCGGGCCBCSSCBCS------------------------------------------
T ss_pred HHHHHhcC--CCCEEEEecCccCcCcchhhhhcccCcc------------------------------------------
Confidence 88888866 9999999999998886432111000000
Q ss_pred hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCC--CCEEEec------
Q psy16848 170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSS--APKIIYR------ 241 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g--~~~~~v~------ 241 (514)
..| .+.++++
T Consensus 161 --------------------------------------------------------------~~G~~~~~v~~~~~~~~~ 178 (483)
T 1rv3_A 161 --------------------------------------------------------------ATSIFFESMAYKVNPDTG 178 (483)
T ss_dssp --------------------------------------------------------------HHHHHSEEEEECBCTTTC
T ss_pred --------------------------------------------------------------cccceEEEEECccccCCC
Confidence 000 1122221
Q ss_pred CCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCce
Q psy16848 242 HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMD 321 (514)
Q Consensus 242 ~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~d 321 (514)
..|++.+++.+.+ +++++|++ +++|++ .+.|+++|.++|+++|+++|+|++|..|..... ... .. ....|
T Consensus 179 ~iD~d~le~~i~~---~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~---~~~-~p-~~~~d 248 (483)
T 1rv3_A 179 YIDYDRLEENARL---FHPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAG---VVP-SP-FEHCH 248 (483)
T ss_dssp SBCHHHHHHHHHH---HCCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHT---SSC-CG-GGTCS
T ss_pred cCCHHHHHHHHhh---cCCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccC---CCC-CC-CCCCc
Confidence 1266777777763 24789988 888888 889999999999999999999999986543110 000 00 12579
Q ss_pred EEEcCCcccc-cCCCeEEEecHH---------------HHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHH
Q psy16848 322 IISGTLGKAF-GNIGGYIVGTKN---------------FIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELR 385 (514)
Q Consensus 322 i~~~S~sK~l-g~~GG~l~~~~~---------------~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 385 (514)
++++|+||++ |+.||+++++++ +.+.+........ ..+.+...+++...+++.....++++++
T Consensus 249 iv~~s~~K~l~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~-~g~~~~~~iaal~~Al~~~~~~~~~~~~ 327 (483)
T 1rv3_A 249 VVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGL-QGGPHNHAIAGVAVALKQAMTPEFKEYQ 327 (483)
T ss_dssp EEEEESSGGGCCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTT-CCSCCHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred EEEecCcccCCCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcc-cCCccHHHHHHHHHHHHHHhChhHHHHH
Confidence 9999999998 556799988764 3344433221111 2234455566666778776555678899
Q ss_pred HHHHHHHHHHHHHHHhCCCccccCC--CcEEEEEeCC-CccHHHHHHHHHHhCCeEEe----cccCCCCCCCCcEEEEEe
Q psy16848 386 AKHQDIVAYLRNELIQIGFPVEHTP--SHIIPIKIGN-PALNTKICDMLLKEKGHYVQ----PINYPTVPVGEEKIRLAP 458 (514)
Q Consensus 386 ~~~~~~~~~l~~~L~~~g~~~~~~~--~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~----~~~~~~~~~~~~~iRl~~ 458 (514)
+++.++++++.+.|.+.|+.+..+. ..++++.+.. +.+..++.+.| ++.||.+. |+..+ +.+.+++|+++
T Consensus 328 ~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L-~~~gI~v~~~~~pg~~~--~~~~~~iRis~ 404 (483)
T 1rv3_A 328 RQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVL-EACSIACNKNTCPGDKS--ALRPSGLRLGT 404 (483)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEEGGGGTCCHHHHHHHH-HHTTEECEEECCSSCSC--TTSCCEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcCCEeccCCCCCceEEEeccCCCCCHHHHHHHH-HhCCcEEecCCCCCCCc--CCCCceEEeec
Confidence 9999999999999999888876542 2456666643 23566777777 58999998 65532 22467999999
Q ss_pred CCCCC----HHHHHHHHHHHHHHHHH
Q psy16848 459 TPFHT----REMIDKFVTDLLAVWKS 480 (514)
Q Consensus 459 ~~~~t----~e~id~~~~~l~~~l~~ 480 (514)
+..+| ++|+++++++|+++++.
T Consensus 405 ~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 405 PALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 85445 99999999999999875
No 191
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.92 E-value=1.5e-23 Score=212.15 Aligned_cols=313 Identities=15% Similarity=0.110 Sum_probs=218.1
Q ss_pred ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhc---cccCCCceEEec
Q psy16848 31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL---GKMIPGLHYISD 107 (514)
Q Consensus 31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l---~~~~~gd~v~~~ 107 (514)
+|++.+++.+++... . .. ..+...++++.+++++|.+++++++|||+|+..++.++ .+ +||.|+++
T Consensus 12 ~~~v~~a~~~~~~~~-~--~~------~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~~~--~gd~Vl~~ 80 (375)
T 2fnu_A 12 DKEDKKAVLEVLNSK-Q--LT------QGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSA--DRNEIITT 80 (375)
T ss_dssp CHHHHHHHHHHHTSS-C--CS------SSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCT--TSCEEEEC
T ss_pred CHHHHHHHHHHHHcC-c--cc------CChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcccCC--CCCEEEEC
Confidence 789999999988641 1 11 13567899999999999988888999999999999888 55 99999999
Q ss_pred CccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccc
Q psy16848 108 AGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 108 ~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
.++|.+...+++..|.+++.++.+. + +
T Consensus 81 ~~~~~~~~~~~~~~g~~~~~~~~~~-~--------------------------~-------------------------- 107 (375)
T 2fnu_A 81 PISFVATANMLLESGYTPVFAGIKN-D--------------------------G-------------------------- 107 (375)
T ss_dssp SSSCTHHHHHHHHTTCEEEECCBCT-T--------------------------S--------------------------
T ss_pred CCccHhHHHHHHHCCCEEEEeccCC-C--------------------------C--------------------------
Confidence 9999999988887777776554310 0 0
Q ss_pred ccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEec
Q psy16848 188 VGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFET 267 (514)
Q Consensus 188 ~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~ 267 (514)
..|.+.+++ ..+++++++++++
T Consensus 108 ------------------------------------------------------~~d~~~l~~----~i~~~~~~v~~~~ 129 (375)
T 2fnu_A 108 ------------------------------------------------------NIDELALEK----LINERTKAIVSVD 129 (375)
T ss_dssp ------------------------------------------------------SBCGGGSGG----GCCTTEEEEEEEC
T ss_pred ------------------------------------------------------CCCHHHHHh----hcCcCceEEEEeC
Confidence 002333333 2334678887776
Q ss_pred CCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc--ccccCCC-eEEEe-c-H
Q psy16848 268 VHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG--KAFGNIG-GYIVG-T-K 342 (514)
Q Consensus 268 ~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s--K~lg~~G-G~l~~-~-~ 342 (514)
+ +|.+.|+++|.++|++||+++|+|++|+++... .+ ...+. -.|+++.|+| |++++ | |+++. + +
T Consensus 130 ~---tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~-~~----~~~~~--~~~i~~~s~s~~K~~~~-g~g~~~~~~~~ 198 (375)
T 2fnu_A 130 Y---AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEY-QN----KKVGG--FALASVFSFHAIKPITT-AEGGAVVTNDS 198 (375)
T ss_dssp G---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEE-TT----EETTS--SSSEEEEECCTTSSSCC-SSCEEEEESCH
T ss_pred C---cCCccCHHHHHHHHHHcCCEEEEECccccCCeE-CC----eeccc--cCCeEEEeCCCCCCccc-cCceEEEeCCH
Confidence 6 899999999999999999999999999966431 11 01111 1256666776 99987 6 66655 4 6
Q ss_pred HHHHHHHhhcCce--------------EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc
Q psy16848 343 NFIDTIRSYAAGF--------------IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE 407 (514)
Q Consensus 343 ~~~~~l~~~~~~~--------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 407 (514)
++++.+....... .+....++..++++...+ +.+++..++.+++++++.+.|+++ ++.+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 273 (375)
T 2fnu_A 199 ELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQL-----KKAPFLMQKREEAALTYDRIFKDNPYFTPL 273 (375)
T ss_dssp HHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHTTCSSEEES
T ss_pred HHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Confidence 7877776543211 111234555444443332 345678888999999999999987 66654
Q ss_pred cC-----CC-cEEEEEeCCC-c-cHHHHHHHHHHhCCeEEecccCCC--------------CC----CCCcEEEEEeCCC
Q psy16848 408 HT-----PS-HIIPIKIGNP-A-LNTKICDMLLKEKGHYVQPINYPT--------------VP----VGEEKIRLAPTPF 461 (514)
Q Consensus 408 ~~-----~~-~~~~i~l~~~-~-~~~~~~~~Ll~~~GI~v~~~~~~~--------------~~----~~~~~iRl~~~~~ 461 (514)
.+ .. .++++.++.. . +..++.+.|. ++||.++....+. .+ ...+++|++++..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~ 352 (375)
T 2fnu_A 274 HPLLKDKSSNHLYPILMHQKFFTCKKLILESLH-KRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHAN 352 (375)
T ss_dssp GGGCSSCCCCSCEEEEECGGGGGGHHHHHHHHH-HTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTT
T ss_pred CCCCCCCcceEEEEEEeCccccchHHHHHHHHH-HCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCC
Confidence 33 12 2456666642 2 5778999995 8999998321111 00 0126899999999
Q ss_pred CCHHHHHHHHHHHHHHHHHcC
Q psy16848 462 HTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 462 ~t~e~id~~~~~l~~~l~~~~ 482 (514)
+|++|+++++++|++++++++
T Consensus 353 ~t~~~i~~~~~~l~~~~~~~~ 373 (375)
T 2fnu_A 353 LNLESVQNIAHSVLKTFESFK 373 (375)
T ss_dssp CCHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999988764
No 192
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.92 E-value=2.8e-25 Score=226.75 Aligned_cols=276 Identities=13% Similarity=0.116 Sum_probs=197.3
Q ss_pred HHHHHHHHhHcC-------CC-cEEEEeccccccccchhhccccCCCc----eEEecCccchhhhhhhhcCCCCeeeccC
Q psy16848 63 EKLEEDVAKLHQ-------KE-AGLVFTSCYVANDSTLFTLGKMIPGL----HYISDAGNHASMIQGIRNSSAPKIIYRH 130 (514)
Q Consensus 63 ~~~~~~la~~~~-------~~-~~i~~~sGt~a~~~~l~~l~~~~~gd----~v~~~~~~h~~~~~~~~~~~~~~~~~~~ 130 (514)
.++++.++++++ .+ ..++++++++++..++.++.. +|| .|+++.++|......++..|.+++.++.
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~--~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 148 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSS--LARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEG 148 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHH--TSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcC--CCCCCcceEEEcCCCchhHHHHHHHcCCeEEEecC
Confidence 667777777765 22 344445556778888888866 999 9999999999998888887777665433
Q ss_pred CChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHH
Q psy16848 131 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDI 210 (514)
Q Consensus 131 ~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~ 210 (514)
+
T Consensus 149 d------------------------------------------------------------------------------- 149 (391)
T 3bwn_A 149 D------------------------------------------------------------------------------- 149 (391)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCC
Q psy16848 211 ISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGA 290 (514)
Q Consensus 211 ~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv 290 (514)
.++++ .++++++++++|+||||.+++ +|.+.++.+++
T Consensus 150 -------------------------------~~~l~----------~~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~ 186 (391)
T 3bwn_A 150 -------------------------------AWGFD----------KKGPYIELVTSPNNPDGTIRE--TVVNRPDDDEA 186 (391)
T ss_dssp -------------------------------STTCC----------CCSCEEEEEESSCTTTCCCCC--CCC-----CCC
T ss_pred -------------------------------HHHcC----------CCCCEEEEECCCCCCCchhHH--HHHHHhhcCCC
Confidence 00111 135789999999999999997 44442222339
Q ss_pred EEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC---eEEEe-cHHHHHHHHhhcCceEeccCCcHHHH
Q psy16848 291 LTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVL 366 (514)
Q Consensus 291 ~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~ 366 (514)
++|+||+|..+ ....+ .. ..+.+++++||||.+|.+| ||+++ ++++++.+....... ..+.+.+.+
T Consensus 187 ~ii~De~y~~~----~~~~l---~~-~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~~~--~~~~~~~~q 256 (391)
T 3bwn_A 187 KVIHDFAYYWP----HYTPI---TR-RQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVN--SIGVSKESQ 256 (391)
T ss_dssp EEEEECTTCST----TTSCC---CC-CBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHHHH--HSSCCHHHH
T ss_pred EEEEeCCCCCC----CCCcc---cc-CCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHHhccc--ccCCCHHHH
Confidence 99999999731 11111 11 3467899999999999778 99987 889988887765433 336788888
Q ss_pred HHHHHHHHHhh---------hchHHHHHHHHHHHHHHHHHHHHhC-CCccccCC--------------CcEEEEEeCCCc
Q psy16848 367 AGAREAIRILS---------SQEGVELRAKHQDIVAYLRNELIQI-GFPVEHTP--------------SHIIPIKIGNPA 422 (514)
Q Consensus 367 ~a~~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~--------------~~~~~i~l~~~~ 422 (514)
.++.++++... +.+++++++.++++++++.+.|++. ++.+..+. +.++++.+++.
T Consensus 257 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~- 335 (391)
T 3bwn_A 257 VRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE- 335 (391)
T ss_dssp HHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS-
T ss_pred HHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCcH-
Confidence 88888887542 4578889999999999999999987 55543322 22567777642
Q ss_pred cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848 423 LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS 480 (514)
Q Consensus 423 ~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~ 480 (514)
..+.+.| +++||.+.++..|.. +.+++|++++ .+++++++++++|++++++
T Consensus 336 --~~~~~~l-~~~gV~v~pg~~fg~--~~~~iRis~~--~~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 336 --TDLVSEL-RRHKVMSRAGERCGS--DKKHVRVSML--SREDVFNVFLERLANMKLI 386 (391)
T ss_dssp --CCHHHHH-HHTTEECEEGGGGTC--CTTEEEEESC--SCHHHHHHHHHHHHSCC--
T ss_pred --HHHHHHH-HHCCEEEccCCCCCC--CCCEEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 2444555 689999999987643 4679999998 4889999999999887654
No 193
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.92 E-value=3.1e-24 Score=217.00 Aligned_cols=307 Identities=15% Similarity=0.098 Sum_probs=216.5
Q ss_pred ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhc-cccCCCceEEecCc
Q psy16848 31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL-GKMIPGLHYISDAG 109 (514)
Q Consensus 31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l-~~~~~gd~v~~~~~ 109 (514)
.|++.+++.+.+.... +...+...++++.+++++|.+++++++|||+|+..++.++ .+ +||+|+++.+
T Consensus 15 ~~~v~~a~~~~~~~~~---------~~~~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~~~--~gd~Vi~~~~ 83 (367)
T 3nyt_A 15 KDKIDAGIQRVLRHGQ---------YILGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGVG--PGDEVITPGF 83 (367)
T ss_dssp HHHHHHHHHHHHHHCC---------CSSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCC--TTCEEEEESS
T ss_pred CHHHHHHHHHHHhcCC---------ccCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhCCC--CcCEEEECCC
Confidence 3567777777766421 1234678899999999999999999999999999999888 44 9999999999
Q ss_pred cchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848 110 NHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189 (514)
Q Consensus 110 ~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (514)
+|.++..+++..|.+++.++.+. +
T Consensus 84 ~~~~~~~~~~~~G~~~~~~~~~~-~------------------------------------------------------- 107 (367)
T 3nyt_A 84 TYVATAETVALLGAKPVYVDIDP-R------------------------------------------------------- 107 (367)
T ss_dssp SCTHHHHHHHHTTCEEEEECBCT-T-------------------------------------------------------
T ss_pred ccHHHHHHHHHcCCEEEEEecCC-c-------------------------------------------------------
Confidence 99999988888777766554310 0
Q ss_pred ccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCC
Q psy16848 190 LYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269 (514)
Q Consensus 190 ~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~ 269 (514)
.. ..|.+.+ ++..++++++|+ ++
T Consensus 108 -----~~---------------------------------------------~~d~~~l----~~~i~~~~~~v~---~~ 130 (367)
T 3nyt_A 108 -----TY---------------------------------------------NLDPQLL----EAAITPRTKAII---PV 130 (367)
T ss_dssp -----TC---------------------------------------------SBCGGGT----GGGCCTTEEEEC---CB
T ss_pred -----cC---------------------------------------------CcCHHHH----HHhcCcCCcEEE---ee
Confidence 00 0023333 333345678877 66
Q ss_pred CCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCC--cccccCC--CeEEEe-cHHH
Q psy16848 270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL--GKAFGNI--GGYIVG-TKNF 344 (514)
Q Consensus 270 nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~--sK~lg~~--GG~l~~-~~~~ 344 (514)
||+|...++++|.++|+++|+++|+|++|++|... .+. ..+. .+ |++++|| +|++++. ||+++. ++++
T Consensus 131 ~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~-~~~----~~~~-~~-di~~~Sf~~~K~l~~~g~gg~~~~~~~~l 203 (367)
T 3nyt_A 131 SLYGQCADFDAINAIASKYGIPVIEDAAQSFGASY-KGK----RSCN-LS-TVACTSFFPSAPLGCYGDGGAIFTNDDEL 203 (367)
T ss_dssp CGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEE-TTE----ETTS-SS-SEEEEECCTTSSSCCSSCCEEEEESCHHH
T ss_pred CCccChhhHHHHHHHHHHcCCEEEEECccccCCeE-CCe----eccC-CC-CEEEEECCCCCcCCCcCceeEEEeCCHHH
Confidence 79999999999999999999999999999976531 111 1111 12 8888897 8999874 488877 4778
Q ss_pred HHHHHhhcCce----------EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccC-CC--
Q psy16848 345 IDTIRSYAAGF----------IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHT-PS-- 411 (514)
Q Consensus 345 ~~~l~~~~~~~----------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~-- 411 (514)
.+.+....... +++..+++..++++...++.+ ++..++.+++.+++.+.|++.++.+... .+
T Consensus 204 ~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~-----~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~ 278 (367)
T 3nyt_A 204 ATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIF-----EEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNI 278 (367)
T ss_dssp HHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTH-----HHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEE
T ss_pred HHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhccCCeeccCCCCCCc
Confidence 77776543321 124567888888877777643 3466777888889999998886544221 11
Q ss_pred ---cEEEEEeCCCccHHHHHHHHHHhCCeEEecccC-CC-----C--CC---------CCcEEEEEeCCCCCHHHHHHHH
Q psy16848 412 ---HIIPIKIGNPALNTKICDMLLKEKGHYVQPINY-PT-----V--PV---------GEEKIRLAPTPFHTREMIDKFV 471 (514)
Q Consensus 412 ---~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~-~~-----~--~~---------~~~~iRl~~~~~~t~e~id~~~ 471 (514)
.++.+.++ +..++.+.|. ++||.++.+.. +. . .. ..+.+|++++..+|++|+++++
T Consensus 279 ~~~~~~~~~~~---~~~~l~~~L~-~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~ 354 (367)
T 3nyt_A 279 SVYAQYTVRMD---NRESVQASLK-AAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIIC 354 (367)
T ss_dssp CCCSSEEEECS---SHHHHHHHHH-HHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHH
T ss_pred eeeEEEEEEeC---CHHHHHHHHH-HCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHH
Confidence 13445554 3678888884 89999876542 11 0 00 1368999999999999999999
Q ss_pred HHHHHH
Q psy16848 472 TDLLAV 477 (514)
Q Consensus 472 ~~l~~~ 477 (514)
+.+++.
T Consensus 355 ~~~~~~ 360 (367)
T 3nyt_A 355 AALTNL 360 (367)
T ss_dssp HHHHC-
T ss_pred HHHHHH
Confidence 998753
No 194
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.92 E-value=2e-23 Score=211.68 Aligned_cols=329 Identities=15% Similarity=0.094 Sum_probs=222.9
Q ss_pred eecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHH-HhHcC-CCcEEEEeccccccccchhhc-cc
Q psy16848 21 CRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDV-AKLHQ-KEAGLVFTSCYVANDSTLFTL-GK 97 (514)
Q Consensus 21 ~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-a~~~~-~~~~i~~~sGt~a~~~~l~~l-~~ 97 (514)
|.+...++...|++.+++.+.++. +. ...+.+...++++.+ ++++| .+++++++|||+|+..++.++ .+
T Consensus 5 i~~~~p~~~~~~~i~~a~~~~~~~-~~-------~~~~~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l~~~ 76 (377)
T 3ju7_A 5 IPFLRASTVPVIEYLDELKEIDAS-HI-------YTNYGPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLKKRK 76 (377)
T ss_dssp BCSCCCCCCCGGGGHHHHHHHHHH-TC-------CSSSCHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHHSCT
T ss_pred eeccCCCCCCcHHHHHHHHHHHHc-CC-------cccCCHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHcCCC
Confidence 555555565678899999999886 21 111236678999999 99999 889999999999999998887 44
Q ss_pred cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcC
Q psy16848 98 MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHG 177 (514)
Q Consensus 98 ~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (514)
+||+|+++.++|.++..+++..|++++.++.+. +
T Consensus 77 --~Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~-~------------------------------------------- 110 (377)
T 3ju7_A 77 --KGKYALMPSFTFPATPLAAIWCGLEPYFIDISI-D------------------------------------------- 110 (377)
T ss_dssp --TCCEEEEESSSCTHHHHHHHHTTCEEEEECBCT-T-------------------------------------------
T ss_pred --CcCEEEECCCCcHHHHHHHHHcCCEEEEEecCC-c-------------------------------------------
Confidence 999999999999999988888887776554310 0
Q ss_pred ceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccC
Q psy16848 178 ALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV 257 (514)
Q Consensus 178 ~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~ 257 (514)
.. ..|.+.+++.+....
T Consensus 111 -----------------~~---------------------------------------------~~d~~~l~~~i~~~~- 127 (377)
T 3ju7_A 111 -----------------DW---------------------------------------------YMDKTVLWDKIEELK- 127 (377)
T ss_dssp -----------------TC---------------------------------------------SBCHHHHHHHHHHHG-
T ss_pred -----------------cC---------------------------------------------CcCHHHHHHHHhcCC-
Confidence 00 014455555442110
Q ss_pred CCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC-CCe
Q psy16848 258 KIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN-IGG 336 (514)
Q Consensus 258 ~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~GG 336 (514)
+++++|+ ++|++|...++++|.++|+ ||+++|+|++|++|.... +. ...+...+.+++.++.+|.+++ .||
T Consensus 128 ~~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~-~~---~~g~~~~d~~~~S~~~~K~l~~g~gG 199 (377)
T 3ju7_A 128 EEVAIVV---PYATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMNG-GM---HYGQDFSGMIIYSFHATKPFGIGEGG 199 (377)
T ss_dssp GGEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEET-TE---ETTTTCSSEEEEECBTTSSSCCBSCE
T ss_pred CCceEEE---EECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeEC-CE---eccCCCCcEEEEECCCCCcCCCCCcE
Confidence 1267776 5678999999999999999 999999999999765311 10 1101111344444445799976 237
Q ss_pred EEEe-cHHHHHHHHhhcCc----------eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC--
Q psy16848 337 YIVG-TKNFIDTIRSYAAG----------FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIG-- 403 (514)
Q Consensus 337 ~l~~-~~~~~~~l~~~~~~----------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-- 403 (514)
+++. ++++.+.++..... .++...++...++.+...++.+ ++..++.+++.+++.+.|++.+
T Consensus 200 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l-----~~~~~~~~~~~~~~~~~L~~~~~~ 274 (377)
T 3ju7_A 200 LIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKW-----DDKLKERTRISEWYKQLLQSNGLM 274 (377)
T ss_dssp EEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTH-----HHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred EEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCCc
Confidence 7765 56777777654431 1234567777777777766533 3467777888888888888873
Q ss_pred -CccccCCC-----cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC---------C---------CCcEEEEEeC
Q psy16848 404 -FPVEHTPS-----HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP---------V---------GEEKIRLAPT 459 (514)
Q Consensus 404 -~~~~~~~~-----~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~---------~---------~~~~iRl~~~ 459 (514)
+.+....+ .++.+.+++..+.+++.+.| +++||.++.+..+... . ..+.+|++++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~ 353 (377)
T 3ju7_A 275 KKGWQLQKTEAVIQQFMPILCPEEVRNKQVIEDL-KKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLW 353 (377)
T ss_dssp TTTCBCCCCSCBCCSSEEEECCTTSCHHHHHHHH-HTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCC
T ss_pred cccccCCCCCcceEEEEEEEeCChhhHHHHHHHH-HHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCC
Confidence 22322111 14456666544578899999 5999999865521100 0 1368999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q psy16848 460 PFHTREMIDKFVTDLLAVWKS 480 (514)
Q Consensus 460 ~~~t~e~id~~~~~l~~~l~~ 480 (514)
..+|++|++++++.|++++..
T Consensus 354 ~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 354 EGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp TTCCHHHHHHHHHHHTC----
T ss_pred CCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999887754
No 195
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.92 E-value=1.2e-24 Score=227.12 Aligned_cols=354 Identities=15% Similarity=0.109 Sum_probs=216.2
Q ss_pred CCceeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhc
Q psy16848 16 SNRVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL 95 (514)
Q Consensus 16 ~g~~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l 95 (514)
.|..|+|+.+..+. |++.+++.+++.. +. ..++..+...+++++++++++.+++++++|||+|+..++.++
T Consensus 39 ~~~~ylD~~~~~~~--~~v~~a~~~~l~~-~~------~~y~~~~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al~~~ 109 (467)
T 2oqx_A 39 SEDVFIDLLTDSGT--GAVTQSMQAAMMR-GD------EAYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVL 109 (467)
T ss_dssp GGGCSEECSCCSSC--SCCCHHHHHHTTS-CC------CCSSSCHHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHHHHH
T ss_pred CCCeeEecccCCCc--HHHHHHHHHHhcc-Cc------ceeccCchhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHHHHH
Confidence 45567888655444 8899988887653 11 123444667899999999999999999999999999999888
Q ss_pred cccCC-----C----ceEEecCccchhhhh-hhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccc
Q psy16848 96 GKMIP-----G----LHYISDAGNHASMIQ-GIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP 165 (514)
Q Consensus 96 ~~~~~-----g----d~v~~~~~~h~~~~~-~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
.. + | |+|+++ .+|..... .....++.++...... +
T Consensus 110 ~~--~~~~~~G~~~~d~Ii~~-~~h~~t~~~~~~~~~~~~~~~~~~~------------------------~-------- 154 (467)
T 2oqx_A 110 IK--KREQEKGLDRSKMVAFS-NYFFDTTQGHSQINGCTVRNVYIKE------------------------A-------- 154 (467)
T ss_dssp HH--HHHHHHCCCTTTCEEEE-SSCCHHHHHHHHHTTCEEEECBCTT------------------------T--------
T ss_pred hc--cccccCCCCccceEEec-ccccccchhhhhccCcceeeccccc------------------------c--------
Confidence 65 6 7 888877 56644322 2222333222100000 0
Q ss_pred hhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec-CCC
Q psy16848 166 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR-HND 244 (514)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~-~~d 244 (514)
++ .. ...... ..|
T Consensus 155 ----------------~~-------------------------------------------------~~-~~~~~~~~~d 168 (467)
T 2oqx_A 155 ----------------FD-------------------------------------------------TG-VRYDFKGNFD 168 (467)
T ss_dssp ----------------TC-------------------------------------------------TT-SCCTTTTCBC
T ss_pred ----------------cc-------------------------------------------------CC-CCCCccCCcC
Confidence 00 00 000000 126
Q ss_pred hhHHHHHHhhccCCCceEEEEecCCCCC-ccccC---HHHHHHHHHHcCCEEEEeccccc-ccc-------CCCCCCccc
Q psy16848 245 VNHLTQVLENMDVKIPKLVAFETVHSMT-GAICP---LKELCEVSHQHGALTFVDEVHAV-GLY-------GEHGAGIGE 312 (514)
Q Consensus 245 ~~~l~~~l~~~~~~~~~~vv~~~~~npt-G~~~~---l~~l~~l~~~~gv~li~Dea~~~-g~~-------g~~~~~~~~ 312 (514)
.+.+++.+++...+++++|++++++||+ |.+++ +++|+++|++||+++|+|+++.. +.+ +..+.....
T Consensus 169 ~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~ 248 (467)
T 2oqx_A 169 LEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQ 248 (467)
T ss_dssp HHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHH
T ss_pred HHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHH
Confidence 7778888875322358999999999997 88777 78999999999999999988765 321 122211111
Q ss_pred cCC-CccCceEEEcCCcccccCC-CeEEEecHH-HHH---HHHhhc---CceEeccCCcHHHHHHHHHHHHHhhhchHHH
Q psy16848 313 RDG-QLHNMDIISGTLGKAFGNI-GGYIVGTKN-FID---TIRSYA---AGFIFTTSLPPTVLAGAREAIRILSSQEGVE 383 (514)
Q Consensus 313 ~~~-~~~~~di~~~S~sK~lg~~-GG~l~~~~~-~~~---~l~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 383 (514)
... .....|++++|+||+++.+ ||+++++++ +++ .+.... .+.......+...++++...++...+ ++
T Consensus 249 ~~~~~~~~~d~~~~s~sK~~g~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~---~~ 325 (467)
T 2oqx_A 249 ITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMN---LD 325 (467)
T ss_dssp HHHHHGGGCSEEEEESSSTTCCSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTC---HH
T ss_pred HhhhhhccCCeEEEecccccCCCCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhh---HH
Confidence 100 0023677888999999875 788888766 443 333221 11100112222222222222232211 12
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccccCCCcEEEEEeCC---Ccc-----HHHHHHHHHHhCCeEEecccCC-CC-------
Q psy16848 384 LRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGN---PAL-----NTKICDMLLKEKGHYVQPINYP-TV------- 447 (514)
Q Consensus 384 ~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~i~l~~---~~~-----~~~~~~~Ll~~~GI~v~~~~~~-~~------- 447 (514)
..++..++.+++.+.|++.++++.+..+.++++.++. ..+ ..++++.|+.++||.+.++..+ ..
T Consensus 326 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~ 405 (467)
T 2oqx_A 326 WLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGK 405 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCS
T ss_pred HHHHHHHHHHHHHHHHHHCCCeeecCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccccc
Confidence 4455677888999999888777662244566666631 111 4456888844899999874421 11
Q ss_pred --CCCCcEEEEEeCCC-CCHHHHHHHHHHHHHHHHHcC
Q psy16848 448 --PVGEEKIRLAPTPF-HTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 448 --~~~~~~iRl~~~~~-~t~e~id~~~~~l~~~l~~~~ 482 (514)
....+++|++++.. ++++++++++++|++++++.+
T Consensus 406 ~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~~ 443 (467)
T 2oqx_A 406 QLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAA 443 (467)
T ss_dssp BCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSGG
T ss_pred cccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 11247999999988 999999999999999998754
No 196
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.92 E-value=3.7e-24 Score=219.11 Aligned_cols=284 Identities=17% Similarity=0.122 Sum_probs=197.3
Q ss_pred hHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHH
Q psy16848 60 LFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQV 139 (514)
Q Consensus 60 ~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 139 (514)
+...++++++++++|.++.++++||++|+..++. +.+ +||+|+++.+.|.++...+.
T Consensus 67 p~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~-l~~--~gd~Vl~~~~~y~~~~~~~~-------------------- 123 (403)
T 3cog_A 67 PTRNCLEKAVAALDGAKYCLAFASGLAATVTITH-LLK--AGDQIICMDDVYGGTNRYFR-------------------- 123 (403)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHT-TSC--TTCEEEEESSCCHHHHHHHH--------------------
T ss_pred chHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-HhC--CCCEEEEeCCCcchHHHHHH--------------------
Confidence 5678999999999998889999999998888887 655 99999999999988654321
Q ss_pred HHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCc
Q psy16848 140 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPE 219 (514)
Q Consensus 140 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~ 219 (514)
T Consensus 124 -------------------------------------------------------------------------------- 123 (403)
T 3cog_A 124 -------------------------------------------------------------------------------- 123 (403)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcC-CEEEEeccc
Q psy16848 220 VAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHG-ALTFVDEVH 298 (514)
Q Consensus 220 v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~g-v~li~Dea~ 298 (514)
..+...|.+++.++.+|.+.+++.++ +++++|++++++||+|.++|+++|.++|+++| +++|+|++|
T Consensus 124 --------~~~~~~G~~v~~v~~~d~~~l~~~i~----~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~ 191 (403)
T 3cog_A 124 --------QVASEFGLKISFVDCSKIKLLEAAIT----PETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTF 191 (403)
T ss_dssp --------HTGGGGTCEEEEECTTSHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTT
T ss_pred --------HHHHHcCCEEEEECCCCHHHHHHhcC----cCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCC
Confidence 01122345555666555555555543 46899999999999999999999999999999 999999999
Q ss_pred cccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848 299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI 373 (514)
Q Consensus 299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l 373 (514)
+.+.... + . ..++|+++.|+||+++++| |+++++ +++++.+......+ +...++..+.++...+
T Consensus 192 ~~~~~~~------~-~--~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~--g~~~~~~~~~~~~~~l 260 (403)
T 3cog_A 192 MSPYFQR------P-L--ALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSL--GAVPSPIDCYLCNRGL 260 (403)
T ss_dssp TCTTTCC------T-T--TTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHH
T ss_pred cccccCC------c-c--ccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhc--CCCCCHHHHHHHHhhh
Confidence 9654321 1 1 2368999999999997533 898884 78888887655444 3456777777776666
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHhC---------------CCcccc----CCCcEEEEEeCCCccHHHHHHHHHHh
Q psy16848 374 RILSSQEGVELRAKHQDIVAYLRNELIQI---------------GFPVEH----TPSHIIPIKIGNPALNTKICDMLLKE 434 (514)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---------------g~~~~~----~~~~~~~i~l~~~~~~~~~~~~Ll~~ 434 (514)
+.+ ....++..++...+.+.|++. ++.+.. ..++++.+.++.. ..+..+.+ ++
T Consensus 261 ~~l-----~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~--~~~~~~~l-~~ 332 (403)
T 3cog_A 261 KTL-----HVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT--LQHAEIFL-KN 332 (403)
T ss_dssp TTH-----HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC--HHHHHHHH-HH
T ss_pred hHH-----HHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC--HHHHHHHH-Hh
Confidence 533 234455555555666666543 222221 2367888887643 23444444 57
Q ss_pred CCeEEeccc---------CCC------C--------CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848 435 KGHYVQPIN---------YPT------V--------PVGEEKIRLAPTPFHTREMIDKFVTDLLAV 477 (514)
Q Consensus 435 ~GI~v~~~~---------~~~------~--------~~~~~~iRl~~~~~~t~e~id~~~~~l~~~ 477 (514)
.||.+...+ .|. . ...++.+|++++..+++++++.+.++|+++
T Consensus 333 ~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~ 398 (403)
T 3cog_A 333 LKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAA 398 (403)
T ss_dssp CSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHh
Confidence 888654321 111 0 112579999999877777777777777654
No 197
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.92 E-value=4.2e-24 Score=217.85 Aligned_cols=312 Identities=17% Similarity=0.191 Sum_probs=216.3
Q ss_pred ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhc-cccCCCceEEecCc
Q psy16848 31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL-GKMIPGLHYISDAG 109 (514)
Q Consensus 31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l-~~~~~gd~v~~~~~ 109 (514)
.+++.+++.+.+..... . +..+...++++.++++++.+++++++|||+|+..++.++ .. +||.|+++.+
T Consensus 35 ~~~~~~a~~~~~~~~~~-------~-~~~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~~~--~gd~vl~~~~ 104 (391)
T 3dr4_A 35 DGNERDYVLECMDTTWI-------S-SVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIG--PGDEVIVPSL 104 (391)
T ss_dssp CSSHHHHHHHHHHHTCC-------S-SCSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHTCC--TTCEEEEESS
T ss_pred CHHHHHHHHHHHHcCCc-------c-CCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCC--CcCEEEECCC
Confidence 47888888888875211 1 234778999999999999999999999999999999888 55 9999999999
Q ss_pred cchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848 110 NHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189 (514)
Q Consensus 110 ~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (514)
+|.+...+++..|.+++.++.+. +
T Consensus 105 ~~~~~~~~~~~~g~~~~~~~~~~-~------------------------------------------------------- 128 (391)
T 3dr4_A 105 TYIASANSVTYCGATPVLVDNDP-R------------------------------------------------------- 128 (391)
T ss_dssp SCTHHHHHHHHTTCEEEEECBCT-T-------------------------------------------------------
T ss_pred chHHHHHHHHHCCCEEEEEecCc-c-------------------------------------------------------
Confidence 99999988888777776554320 0
Q ss_pred ccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCC
Q psy16848 190 LYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269 (514)
Q Consensus 190 ~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~ 269 (514)
.. .-|.+.++ +..++++++++ ++
T Consensus 129 -----~~---------------------------------------------~~d~~~l~----~~~~~~~~~v~---~~ 151 (391)
T 3dr4_A 129 -----TF---------------------------------------------NLDAAKLE----ALITPRTKAIM---PV 151 (391)
T ss_dssp -----TC---------------------------------------------SBCGGGSG----GGCCTTEEEEC---CB
T ss_pred -----cc---------------------------------------------CcCHHHHH----HhcCCCceEEE---EE
Confidence 00 00223322 23334677777 45
Q ss_pred CCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc--ccccC-CCeEEEec-HHHH
Q psy16848 270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG--KAFGN-IGGYIVGT-KNFI 345 (514)
Q Consensus 270 nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s--K~lg~-~GG~l~~~-~~~~ 345 (514)
||+|...++++|.++|+++|+++|+|++|+.|..... ...+. -.|+.+.||+ |++++ .||+++.+ +++.
T Consensus 152 n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~-----~~~~~--~~di~~~S~s~~K~l~~g~gg~~~~~~~~~~ 224 (391)
T 3dr4_A 152 HLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRG-----KKSGS--LGDCATFSFFGNAIITTGEGGMITTNDDDLA 224 (391)
T ss_dssp CGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETT-----EETTS--SSSEEEEECBTTSSSCCBSCEEEEESCHHHH
T ss_pred CCCCChhhHHHHHHHHHHcCCEEEEECcccccceECC-----eeecc--cCCEEEEECCCCCcCCcCCeEEEEECCHHHH
Confidence 7999999999999999999999999999996653110 01111 1356666654 99975 33787765 5576
Q ss_pred HHHHhhcCce------------EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccC----
Q psy16848 346 DTIRSYAAGF------------IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHT---- 409 (514)
Q Consensus 346 ~~l~~~~~~~------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~---- 409 (514)
+.+....... ++...++...+++....++ .+++..++.+++.+++.+.|++.++.+..+
T Consensus 225 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~-----~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 299 (391)
T 3dr4_A 225 AKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLE-----RVDEHLAARERVVGWYEQKLARLGNRVTKPHVAL 299 (391)
T ss_dssp HHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHH-----THHHHHHHHHHHHHHHHHHHGGGTTSEECCCCCT
T ss_pred HHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhcCCccccCcCCCC
Confidence 6665433211 1123445555554444433 345677888889999999998877665433
Q ss_pred --C--CcEEEEEeCC--CccHHHHHHHHHHhCCeEEecccCCCC--C---------------CCCcEEEEEeCCCCCHHH
Q psy16848 410 --P--SHIIPIKIGN--PALNTKICDMLLKEKGHYVQPINYPTV--P---------------VGEEKIRLAPTPFHTREM 466 (514)
Q Consensus 410 --~--~~~~~i~l~~--~~~~~~~~~~Ll~~~GI~v~~~~~~~~--~---------------~~~~~iRl~~~~~~t~e~ 466 (514)
. ..++.+.+++ +.+..++.+.|. ++||.++++..+.. + ...+.+|++++..+|++|
T Consensus 300 ~~~~~~~~~~i~~~~~~~~~~~~l~~~L~-~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~ed 378 (391)
T 3dr4_A 300 TGRHVFWMYTVRLGEGLSTTRDQVIKDLD-ALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEAD 378 (391)
T ss_dssp TSCCCCSSEEEEECSSCSSCHHHHHHHHH-HTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHH
T ss_pred CCcceeEEEEEEECCccchhHHHHHHHHH-HCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHH
Confidence 1 1246777775 456788999995 89999997752210 0 014689999999999999
Q ss_pred HHHHHHHHHHHH
Q psy16848 467 IDKFVTDLLAVW 478 (514)
Q Consensus 467 id~~~~~l~~~l 478 (514)
+++++++|++++
T Consensus 379 i~~~~~~l~~~l 390 (391)
T 3dr4_A 379 IDRVIAALDQVL 390 (391)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
No 198
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.92 E-value=7.2e-24 Score=218.03 Aligned_cols=284 Identities=15% Similarity=0.147 Sum_probs=197.0
Q ss_pred chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848 59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ 138 (514)
Q Consensus 59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~ 138 (514)
.+..+++++++++++|.+.+++++||++|+..++.++.+ +||+|+++.+.|.+....+.
T Consensus 81 ~p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~al~~--~Gd~Vi~~~~~y~~~~~~~~------------------- 139 (430)
T 3ri6_A 81 NPTVEDLEQRLKNLTGALGVLALGSGMAAISTAILTLAR--AGDSVVTTDRLFGHTLSLFQ------------------- 139 (430)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCC--TTCEEEEETTCCHHHHHHHH-------------------
T ss_pred CHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEcCCCchhHHHHHH-------------------
Confidence 577899999999999999999999999999999988866 99999999999988775221
Q ss_pred HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848 139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP 218 (514)
Q Consensus 139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~ 218 (514)
T Consensus 140 -------------------------------------------------------------------------------- 139 (430)
T 3ri6_A 140 -------------------------------------------------------------------------------- 139 (430)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848 219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH 298 (514)
Q Consensus 219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~ 298 (514)
..+...|.++++++.+|.+.+++.++ +++++|++++++||+|.+.|+++|.++|+++|+++|+|++|
T Consensus 140 ---------~~~~~~G~~~~~v~~~d~~~l~~ai~----~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~ 206 (430)
T 3ri6_A 140 ---------KTLPSFGIEVRFVDVMDSLAVEHACD----ETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTM 206 (430)
T ss_dssp ---------THHHHTTCEEEEECTTCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTT
T ss_pred ---------HHHHHcCCEEEEeCCCCHHHHHHhhC----CCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 11223355555666555555555553 46899999999999999999999999999999999999999
Q ss_pred cccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEe--cHHH------------------HHHHHhh-cC
Q psy16848 299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVG--TKNF------------------IDTIRSY-AA 353 (514)
Q Consensus 299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~--~~~~------------------~~~l~~~-~~ 353 (514)
+.+... .....+.|+++.|++|++++. ||+++. +.+. +..++.. ..
T Consensus 207 ~~~~~~---------~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~ 277 (430)
T 3ri6_A 207 TPPYLL---------EAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQ 277 (430)
T ss_dssp SCTTTC---------CGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHH
T ss_pred cccccC---------ChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHH
Confidence 855431 111346899999999999864 477773 3212 2222211 11
Q ss_pred ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc-cC----------------CCc-EE
Q psy16848 354 GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE-HT----------------PSH-II 414 (514)
Q Consensus 354 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~----------------~~~-~~ 414 (514)
.+ +..+++..+..+...++.+ ....++..++++++.+.|++. ++..+ .| .|+ ++
T Consensus 278 ~~--g~~~~~~~a~l~l~~l~~l-----~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~l 350 (430)
T 3ri6_A 278 NL--GPSLSPHNAYLQSLGLETM-----ALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSIL 350 (430)
T ss_dssp HH--CCCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEE
T ss_pred hc--CCCCCHHHHHHHHhhhhhH-----HHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEE
Confidence 11 3356777666666666543 335667788888999999876 44321 11 156 99
Q ss_pred EEEeCCCccHHHHHHHHHHhCCeEEecccCCCC--------------------CCCCcEEEEEeCCCCCHHHHHHHHHHH
Q psy16848 415 PIKIGNPALNTKICDMLLKEKGHYVQPINYPTV--------------------PVGEEKIRLAPTPFHTREMIDKFVTDL 474 (514)
Q Consensus 415 ~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~--------------------~~~~~~iRl~~~~~~t~e~id~~~~~l 474 (514)
++.+++.....++.+.+ +..++.++.|..+.. ...++.||++++... ++.+++.|
T Consensus 351 sf~l~~~~~~~~~~~~l-~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~E~----~~dl~~dl 425 (430)
T 3ri6_A 351 TFELESKEASYRFMDAL-KLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGIEE----IEDLKEDI 425 (430)
T ss_dssp EEECSSHHHHHHHHHHC-SSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCSSC----HHHHHHHH
T ss_pred EEEECCHHHHHHHHHhC-CcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCC----HHHHHHHH
Confidence 99998555566777777 356666555443221 124689999998544 44455555
Q ss_pred HHH
Q psy16848 475 LAV 477 (514)
Q Consensus 475 ~~~ 477 (514)
+++
T Consensus 426 ~~a 428 (430)
T 3ri6_A 426 LQA 428 (430)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 199
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.92 E-value=4.4e-24 Score=221.89 Aligned_cols=287 Identities=17% Similarity=0.184 Sum_probs=195.3
Q ss_pred chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848 59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ 138 (514)
Q Consensus 59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~ 138 (514)
.+..+++++++++++|.+++++++||++|+..++. +.. +||+|+++.+.|.+....++
T Consensus 132 ~~~~~~l~~~la~~~g~~~~i~~~sGt~al~~~l~-~~~--~Gd~Vi~~~~~y~~~~~~~~------------------- 189 (464)
T 1ibj_A 132 NPTRDALESLLAKLDKADRAFCFTSGMAALSAVTH-LIK--NGEEIVAGDDVYGGSDRLLS------------------- 189 (464)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHT-TSC--TTCEEEEESSCCHHHHHHHH-------------------
T ss_pred CHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHH-HhC--CCCEEEEECCCchhHHHHHH-------------------
Confidence 35789999999999999989999999998877664 544 99999999999988764321
Q ss_pred HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848 139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP 218 (514)
Q Consensus 139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~ 218 (514)
T Consensus 190 -------------------------------------------------------------------------------- 189 (464)
T 1ibj_A 190 -------------------------------------------------------------------------------- 189 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848 219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH 298 (514)
Q Consensus 219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~ 298 (514)
..+...|++++.++..|.+.+++.+. +++++|++++++||+|.++++++|.++|++||+++|+||+|
T Consensus 190 ---------~~~~~~G~~v~~v~~~d~~~l~~~i~----~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~ 256 (464)
T 1ibj_A 190 ---------QVVPRSGVVVKRVNTTKLDEVAAAIG----PQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSI 256 (464)
T ss_dssp ---------HTSGGGTCEEEEECTTSHHHHHHHCC----SSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTT
T ss_pred ---------HHHHHcCCEEEEeCCCCHHHHHHHhc----cCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCC
Confidence 01122345555555555555555553 46899999999999999999999999999999999999999
Q ss_pred cccccCCCCCCccccCCCccCceEEEcCCcccccCC-C---eEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848 299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI-G---GYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI 373 (514)
Q Consensus 299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~-G---G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l 373 (514)
+.+... .+. ..++|++++|+||++++. | |+++++ +++++.+....... +...++..+.++..++
T Consensus 257 ~~g~~~------~~~---~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~--g~~~~~~~~~a~~~al 325 (464)
T 1ibj_A 257 MSPVLS------RPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSE--GSGLAPFDCWLCLRGI 325 (464)
T ss_dssp TCTTTC------CGG---GTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHT--TCBCCHHHHHHHHHHH
T ss_pred cccccC------Chh---hcCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhc--CCCCCHHHHHHHHhch
Confidence 854321 011 236899999999999652 3 899888 47888776554222 2245677777776666
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHhC---------------CCccccC----CCcEEEEEeCCCccHHHHHHHHHHh
Q psy16848 374 RILSSQEGVELRAKHQDIVAYLRNELIQI---------------GFPVEHT----PSHIIPIKIGNPALNTKICDMLLKE 434 (514)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---------------g~~~~~~----~~~~~~i~l~~~~~~~~~~~~Ll~~ 434 (514)
+... ...++..+....+.+.|++. ++.+..+ .++++.+.+++......+.+.| +.
T Consensus 326 ~~~~-----~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~L-~~ 399 (464)
T 1ibj_A 326 KTMA-----LRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETT-KY 399 (464)
T ss_dssp TTHH-----HHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHC-SS
T ss_pred hhHH-----HHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECCHHHHHHHHHhc-Cc
Confidence 5321 12222222333333444332 2223222 3568888885322234577777 37
Q ss_pred CCeEEeccc------------CCCC--------CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 435 KGHYVQPIN------------YPTV--------PVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 435 ~GI~v~~~~------------~~~~--------~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
.||.++.|. .+.. ...++++|++++. |+++++++.|+++++++
T Consensus 400 ~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al~~~ 462 (464)
T 1ibj_A 400 FSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFKTF 462 (464)
T ss_dssp SEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHHSC
T ss_pred ceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHHhhc
Confidence 888887764 1111 1125799999994 89999999999988753
No 200
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.92 E-value=5e-25 Score=242.81 Aligned_cols=380 Identities=13% Similarity=0.041 Sum_probs=239.9
Q ss_pred eeeeccc---CCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC---CCcEEEEeccccccc
Q psy16848 19 VTCRLSS---VQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ---KEAGLVFTSCYVAND 89 (514)
Q Consensus 19 ~~~d~~~---~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~i~~~sGt~a~~ 89 (514)
+|+|+.+ +..+| ||++.+|+.+|++++++... .....+...+++++++++++ .++++|++||++||+
T Consensus 381 ~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~~~----~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E 456 (831)
T 4a0g_A 381 QQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMF----PENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIE 456 (831)
T ss_dssp EEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSCCC----TTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHH
T ss_pred heeeecccHhhcCCCCCCCHHHHHHHHHHHhhcccccc----cccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHH
Confidence 6778755 34443 79999999999999875421 11235778899999999986 568899999999999
Q ss_pred cchhhccc-----c-----------CCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcc---cCCCcE
Q psy16848 90 STLFTLGK-----M-----------IPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD---VKIPKL 150 (514)
Q Consensus 90 ~~l~~l~~-----~-----------~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~~ 150 (514)
.||+...+ . ++.+.|..+..+|..++.+++.++..........+ +.+.. ...|..
T Consensus 457 ~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~------~~~~~~~~~~~p~~ 530 (831)
T 4a0g_A 457 IALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQP------WYTGRGLFLDPPTV 530 (831)
T ss_dssp HHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCT------TCCCCEEEECCCEE
T ss_pred HHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccc------cccCCccccCCccc
Confidence 99987621 1 13457778899999999999888754321100000 00000 000100
Q ss_pred EEeeccccccCC------ccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeec
Q psy16848 151 VAFETVHSMTGA------ICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHA 224 (514)
Q Consensus 151 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~ 224 (514)
...+++++.+-+ .+...++..+.+..+.. .+ ...
T Consensus 531 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~----------~~~--------------------------- 570 (831)
T 4a0g_A 531 FLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKS---RD----------AST--------------------------- 570 (831)
T ss_dssp EEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGG---GG----------GSH---------------------------
T ss_pred cccCCceEecCCccccccccccccccchhhhhccc---cc----------chh---------------------------
Confidence 001121111100 00000000000000000 00 000
Q ss_pred chHHHHhhCCCCEEEecCCChhHHHHHHhhc----cCCCceEEEEecC-CCCCccccC----HHHHHHHHHHcCCEEEEe
Q psy16848 225 SMIQGIRNSSAPKIIYRHNDVNHLTQVLENM----DVKIPKLVAFETV-HSMTGAICP----LKELCEVSHQHGALTFVD 295 (514)
Q Consensus 225 ~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~----~~~~~~~vv~~~~-~nptG~~~~----l~~l~~l~~~~gv~li~D 295 (514)
......+.+++.|++. ..+++++|+++++ ++..|...+ +++|+++|++||+++|+|
T Consensus 571 ---------------~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~D 635 (831)
T 4a0g_A 571 ---------------LARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFD 635 (831)
T ss_dssp ---------------HHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEE
T ss_pred ---------------hhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEE
Confidence 0000124455555432 2356899999997 999998876 899999999999999999
Q ss_pred cccc-ccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHHHHHHHhhcC----ceEeccCCcHHHH
Q psy16848 296 EVHA-VGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNFIDTIRSYAA----GFIFTTSLPPTVL 366 (514)
Q Consensus 296 ea~~-~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~~l~~~~~----~~~~~~~~~~~~~ 366 (514)
|+++ +|+.|+.+ ..+.+++ .+|++ +++|++++ | |++++++++.+.+..... ..+++++.+++.+
T Consensus 636 EV~tGfGRtG~~f--a~e~~gv--~PDii--tlsK~L~g-G~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~ 708 (831)
T 4a0g_A 636 EVFTGFWRLGVET--TTELLGC--KPDIA--CFAKLLTG-GMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGC 708 (831)
T ss_dssp CTTTTTTTTSBSS--THHHHSS--CCSEE--EECGGGGT-TSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHH
T ss_pred cCccccccCCCch--hhHhcCC--CCcEE--EEeccccc-CccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHH
Confidence 9999 77776544 2344554 78998 89999977 4 899999999988764321 1334678899999
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHH--------HHHHHHHHhC-CCccccCCCcEEEEEeCCC--------ccHHHHHH
Q psy16848 367 AGAREAIRILSSQEGVELRAKHQDIV--------AYLRNELIQI-GFPVEHTPSHIIPIKIGNP--------ALNTKICD 429 (514)
Q Consensus 367 ~a~~~~l~~~~~~~~~~~~~~~~~~~--------~~l~~~L~~~-g~~~~~~~~~~~~i~l~~~--------~~~~~~~~ 429 (514)
+++.++|+.+.++. +.+++.++. +.+.+.+.+. .+..+...|.++.+++... ....++.+
T Consensus 709 Aaala~L~~i~~~~---l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~ 785 (831)
T 4a0g_A 709 ATAAKAIQWFKDPE---TNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLLI 785 (831)
T ss_dssp HHHHHHHHHHHCTT---TCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEEETTEEEEEEC---------CHHHHHHHH
T ss_pred HHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEeecccEEEEEEecCccccccchHHHHHHHH
Confidence 99999999886544 222222211 2344455554 3333455677888887532 23557888
Q ss_pred HHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848 430 MLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 430 ~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~ 482 (514)
.|+ ++||.+.+. .+.+|++++..+|++|+++++++|++++++++
T Consensus 786 ~l~-e~Gv~v~p~--------g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l~ 829 (831)
T 4a0g_A 786 MLR-EDGIFTRPL--------GNVIYLMCGPCTSPEICRRLLTKLYKRLGEFN 829 (831)
T ss_dssp HHH-HTTEECCCB--------TTEEEEECCTTCCHHHHHHHHHHHHHHHTTTC
T ss_pred HHH-HCCcEEEec--------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 886 899998753 35899999999999999999999999987653
No 201
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.92 E-value=7.2e-23 Score=213.13 Aligned_cols=319 Identities=14% Similarity=0.123 Sum_probs=206.4
Q ss_pred cchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccc-hhhhhhhhcCCCCeeeccCCChHHH
Q psy16848 58 NSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNH-ASMIQGIRNSSAPKIIYRHNDVNHL 136 (514)
Q Consensus 58 ~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h-~~~~~~~~~~~~~~~~~~~~d~~~l 136 (514)
..+...++++.++++++.+++++++||++|+..++.++.+ +|| +++.++| .+...+++..|++++.++... +
T Consensus 73 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~al~~l~~--~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~-~-- 145 (456)
T 2ez2_A 73 GSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLAIK--PGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDE-A-- 145 (456)
T ss_dssp SCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHCC--TTC--EEEESSCCHHHHHHHHHTTCEEEECBCGG-G--
T ss_pred cChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhCC--CCC--EeccccccchhHHHHHHcCCEEEEecccc-c--
Confidence 3567889999999999999999999999999999988865 999 5556666 887888888888777553310 0
Q ss_pred HHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhcc
Q psy16848 137 TQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLV 216 (514)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~ 216 (514)
....
T Consensus 146 ------~~~~---------------------------------------------------------------------- 149 (456)
T 2ez2_A 146 ------HDAG---------------------------------------------------------------------- 149 (456)
T ss_dssp ------GCTT----------------------------------------------------------------------
T ss_pred ------cccc----------------------------------------------------------------------
Confidence 0000
Q ss_pred CCceeeecchHHHHhhCCCCEEEec-CCChhHHHHHHhhccCCCceEEEEecCCC-CCccccC---HHHHHHHHHHcCCE
Q psy16848 217 NPEVAIHASMIQGIRNSSAPKIIYR-HNDVNHLTQVLENMDVKIPKLVAFETVHS-MTGAICP---LKELCEVSHQHGAL 291 (514)
Q Consensus 217 ~~~v~~~~~~~~~~~~~g~~~~~v~-~~d~~~l~~~l~~~~~~~~~~vv~~~~~n-ptG~~~~---l~~l~~l~~~~gv~ 291 (514)
....+. ..|.+.+++.+.+...++++++++++++| |+|.+++ +++|.++|++||++
T Consensus 150 -------------------~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~ 210 (456)
T 2ez2_A 150 -------------------LNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIK 210 (456)
T ss_dssp -------------------CCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCC
T ss_pred -------------------ccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCe
Confidence 000000 11566677777643212358999999998 9999998 99999999999999
Q ss_pred EEEeccccccc--------cCCCCCCccccC-CCccCceEEEcCCcccccCC-CeEEEe-cHHHHHHHHhhcCce-Ee--
Q psy16848 292 TFVDEVHAVGL--------YGEHGAGIGERD-GQLHNMDIISGTLGKAFGNI-GGYIVG-TKNFIDTIRSYAAGF-IF-- 357 (514)
Q Consensus 292 li~Dea~~~g~--------~g~~~~~~~~~~-~~~~~~di~~~S~sK~lg~~-GG~l~~-~~~~~~~l~~~~~~~-~~-- 357 (514)
+|+||+|+.|. ....+..+.+.. ......|+++.|++|..+.+ ||++++ ++++++.+....... .+
T Consensus 211 li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (456)
T 2ez2_A 211 VFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDDEMFSSAKELVVVYEGMPS 290 (456)
T ss_dssp EEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSCEEEEESCHHHHHHHHHHHHHHTCCTT
T ss_pred EEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCCCCceeEEEECCHHHHHHHHHHHhhccCccc
Confidence 99999999641 111221110000 00113577777888987643 599888 678887765433210 00
Q ss_pred ccCCcHHHHHH-HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCC-CcEEEEEeC---CCccHHHH-----
Q psy16848 358 TTSLPPTVLAG-AREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTP-SHIIPIKIG---NPALNTKI----- 427 (514)
Q Consensus 358 ~~~~~~~~~~a-~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~i~l~---~~~~~~~~----- 427 (514)
..+.+...+.+ +.+.++.+. ++..++.+++.+++.+.|++.|+++..+. +.++++.+. ...+..++
T Consensus 291 ~~~~~~~~~~a~a~~~~~~~~----~~~~~~~~~~~~~l~~~L~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l 366 (456)
T 2ez2_A 291 YGGLAGRDMEAMAIGLREAMQ----YEYIEHRVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSL 366 (456)
T ss_dssp TTTCCHHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHTTTSCGGGCHHHHH
T ss_pred ccCcchhHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHhcCCCccccCCCceEEEEEhHHhcCCCChhhccHHHH
Confidence 11223333333 344333321 34566667778888888988777765443 456666652 22223334
Q ss_pred HHHHHHhCCeEEec-ccCCCC---------CCCCcEEEEEeCCC-CCHHHHHHHHHHHHHHHHHcC
Q psy16848 428 CDMLLKEKGHYVQP-INYPTV---------PVGEEKIRLAPTPF-HTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 428 ~~~Ll~~~GI~v~~-~~~~~~---------~~~~~~iRl~~~~~-~t~e~id~~~~~l~~~l~~~~ 482 (514)
++.|++++||.+.+ +..+.. ..+.+++|++++.. ++++++++++++|++++++..
T Consensus 367 ~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 367 AASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKE 432 (456)
T ss_dssp HHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 77774588998754 332110 12246899999976 899999999999999998754
No 202
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.92 E-value=2e-23 Score=217.09 Aligned_cols=333 Identities=12% Similarity=0.025 Sum_probs=224.1
Q ss_pred ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCc-------EEEEeccccccccchhhccc------
Q psy16848 31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEA-------GLVFTSCYVANDSTLFTLGK------ 97 (514)
Q Consensus 31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-------~i~~~sGt~a~~~~l~~l~~------ 97 (514)
+|.+.+++.+++......+. ...+..++.+++++++++++|.+. ++++++||+|+..++.++..
T Consensus 55 ~~~v~e~~~~a~~~~~~~~~---~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~ 131 (452)
T 2dgk_A 55 DENVHKLMDLSINKNWIDKE---EYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRM 131 (452)
T ss_dssp CHHHHHHHHHTTTCBTTCTT---TCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccCCCChh---hChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence 57787777776654222221 122445677888999999998763 67788899999888877642
Q ss_pred cCCC-----ceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848 98 MIPG-----LHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV 172 (514)
Q Consensus 98 ~~~g-----d~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
..+| +.|+++. .|.++..+++..|.+++.++.++ +
T Consensus 132 ~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~-~-------------------------------------- 171 (452)
T 2dgk_A 132 EAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRP-G-------------------------------------- 171 (452)
T ss_dssp HHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCBT-T--------------------------------------
T ss_pred HhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecCC-C--------------------------------------
Confidence 0133 6899999 99998888887777766554310 0
Q ss_pred hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848 173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL 252 (514)
Q Consensus 173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l 252 (514)
.+ .-|.+.+++.+
T Consensus 172 -----------------------~~--------------------------------------------~~d~~~l~~~i 184 (452)
T 2dgk_A 172 -----------------------QL--------------------------------------------FMDPKRMIEAC 184 (452)
T ss_dssp -----------------------BC--------------------------------------------SCCHHHHHHHC
T ss_pred -----------------------CC--------------------------------------------eECHHHHHHHH
Confidence 00 00334444444
Q ss_pred hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHc------CCEEEEecccccccc---CCCCCCccccCCCccCceEE
Q psy16848 253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH------GALTFVDEVHAVGLY---GEHGAGIGERDGQLHNMDII 323 (514)
Q Consensus 253 ~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~------gv~li~Dea~~~g~~---g~~~~~~~~~~~~~~~~di~ 323 (514)
++++++|++++++||+|.+.|+++|.++|+++ |+++++|++|+.+.. .... +......+.|++
T Consensus 185 ----~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~----~~~~~~~~~d~~ 256 (452)
T 2dgk_A 185 ----DENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDI----VWDFRLPRVKSI 256 (452)
T ss_dssp ----CTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTC----CCSTTSTTEEEE
T ss_pred ----hhCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccc----hhhcCCCCCcEE
Confidence 44689999999999999999999999999996 999999999995432 2211 111113468999
Q ss_pred EcCCccccc-CCC-eEEEecH-HHH-HHHHhhcCce-----Ee--ccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q psy16848 324 SGTLGKAFG-NIG-GYIVGTK-NFI-DTIRSYAAGF-----IF--TTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIV 392 (514)
Q Consensus 324 ~~S~sK~lg-~~G-G~l~~~~-~~~-~~l~~~~~~~-----~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 392 (514)
++|+||++. +.| |+++.++ +.+ +.+....... .+ ..+.+.....+..+++..+..++++++.++..+++
T Consensus 257 ~~~~hK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a 336 (452)
T 2dgk_A 257 SASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVA 336 (452)
T ss_dssp EEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECcccccCCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999999763 334 8888754 333 3332111110 00 11222223344444555554566788899999999
Q ss_pred HHHHHHHHhC-CCcccc-----CCCcEEEEEeCCC----ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCC
Q psy16848 393 AYLRNELIQI-GFPVEH-----TPSHIIPIKIGNP----ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFH 462 (514)
Q Consensus 393 ~~l~~~L~~~-g~~~~~-----~~~~~~~i~l~~~----~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~ 462 (514)
+++.+.|++. ++.+.. +..+++.++++.. .+..++.+.|. ++||.+.....+....+..++|++++..+
T Consensus 337 ~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRis~~~~~ 415 (452)
T 2dgk_A 337 AYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLR-LRGWQVPAFTLGGEATDIVVMRIMCRRGF 415 (452)
T ss_dssp HHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHH-HTTCBCCEEECSTTCTTCEEEEEECCTTC
T ss_pred HHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHH-hcCCeeeeeeCCcccCCeEEEEEEecCCC
Confidence 9999999998 577653 3456788887642 23478999995 89997654333222234679999999899
Q ss_pred CHHHHHHHHHHHHHHHHHcC
Q psy16848 463 TREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 463 t~e~id~~~~~l~~~l~~~~ 482 (514)
|++|++++++.|+++++.++
T Consensus 416 t~e~id~li~~l~~~~~~~~ 435 (452)
T 2dgk_A 416 EMDFAELLLEDYKASLKYLS 435 (452)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887764
No 203
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.91 E-value=2.1e-23 Score=213.03 Aligned_cols=286 Identities=14% Similarity=0.091 Sum_probs=195.8
Q ss_pred cchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848 58 NSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT 137 (514)
Q Consensus 58 ~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~ 137 (514)
..+...+++++++++.|.+++++++||++|+.. +.++.+ +||+|+++.+.|.++...+...+
T Consensus 65 ~~p~~~~l~~~la~l~g~~~~~~~~sG~~Ai~~-~~~l~~--~gd~Vi~~~~~y~~~~~~~~~~~--------------- 126 (400)
T 3nmy_A 65 HNPTRFAYERCVAALEGGTRAFAFASGMAATST-VMELLD--AGSHVVAMDDLYGGTFRLFERVR--------------- 126 (400)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHH-HHTTSC--TTCEEEEESSCCHHHHHHHHHTH---------------
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEecCHHHHHHH-HHHHcC--CCCEEEEeCCCchHHHHHHHHhh---------------
Confidence 357789999999999999999999999888876 455655 99999999999987764432110
Q ss_pred HHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848 138 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN 217 (514)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~ 217 (514)
T Consensus 127 -------------------------------------------------------------------------------- 126 (400)
T 3nmy_A 127 -------------------------------------------------------------------------------- 126 (400)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecc
Q psy16848 218 PEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV 297 (514)
Q Consensus 218 ~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea 297 (514)
+...|.++++++.+|.+.+++.++ +++++|++++++||+|.+.|+++|.++|++||+++|+|++
T Consensus 127 ------------~~~~g~~~~~v~~~d~~~l~~~i~----~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~ 190 (400)
T 3nmy_A 127 ------------RRTAGLDFSFVDLTDPAAFKAAIR----ADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNT 190 (400)
T ss_dssp ------------HHHHCCEEEEECTTSHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECT
T ss_pred ------------HhhcCeEEEEECCCCHHHHHHHhc----cCCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECC
Confidence 122355566666666666665553 4689999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCccccCCCccCceEEEcCCcccccCC----Ce-EE-EecHHHHHHHHhhcCceEeccCCcHHHHHHHHH
Q psy16848 298 HAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GG-YI-VGTKNFIDTIRSYAAGFIFTTSLPPTVLAGARE 371 (514)
Q Consensus 298 ~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG-~l-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~ 371 (514)
|+.+.... . ...++|+++.|++|++++. || ++ ..++++.+.+......+ +...++..++++..
T Consensus 191 ~~~~~~~~-------~--~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~--g~~~~~~~a~~~l~ 259 (400)
T 3nmy_A 191 FASPMLQR-------P--LSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSI--GGVQGPFDSFLALR 259 (400)
T ss_dssp TTHHHHCC-------G--GGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHH--CCBCCHHHHHHHHH
T ss_pred CcccccCC-------h--hhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHH
Confidence 98544321 1 1236899999999999864 36 44 45678888877655444 34567777766666
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc------------------cCCCcEEEEEeCCC-ccHHHHHHHH
Q psy16848 372 AIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE------------------HTPSHIIPIKIGNP-ALNTKICDML 431 (514)
Q Consensus 372 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~------------------~~~~~~~~i~l~~~-~~~~~~~~~L 431 (514)
.++. +....++..++.+++.+.|++. .+..+ ...|.++.+.++.. .....+.+.+
T Consensus 260 ~l~~-----l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~~~l 334 (400)
T 3nmy_A 260 GLKT-----LPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKT 334 (400)
T ss_dssp HHTT-----HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHHC
T ss_pred hHhH-----HHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHHHcC
Confidence 5543 3346677788888888888876 22211 22466999998653 2345566665
Q ss_pred HHhCCeEEecccCCC------C--------------CCCCcEEEEEeCCCCCHHHHHHHHHHH
Q psy16848 432 LKEKGHYVQPINYPT------V--------------PVGEEKIRLAPTPFHTREMIDKFVTDL 474 (514)
Q Consensus 432 l~~~GI~v~~~~~~~------~--------------~~~~~~iRl~~~~~~t~e~id~~~~~l 474 (514)
+-.++.++.|.... . ...++.+|++++...+++.++.+.++|
T Consensus 335 -~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~~~dli~dl~~al 396 (400)
T 3nmy_A 335 -ELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLGDLRGDLERAL 396 (400)
T ss_dssp -SSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred -CcceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcCCHHHHHHHHHHHH
Confidence 24444433332211 0 113579999999765554444443333
No 204
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.91 E-value=1.4e-22 Score=206.89 Aligned_cols=317 Identities=17% Similarity=0.193 Sum_probs=221.0
Q ss_pred ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhc-cccCCCceEEecCc
Q psy16848 31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL-GKMIPGLHYISDAG 109 (514)
Q Consensus 31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l-~~~~~gd~v~~~~~ 109 (514)
.|++.+++.+.+.. +... ...+...++++.+++++|.+++++++|||+|+..++.++ .. +||.|+++.+
T Consensus 11 ~~~v~~a~~~~~~~-~~~~-------~~g~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~~~--~gd~Vl~~~~ 80 (394)
T 1o69_A 11 GGNELKYIEEVFKS-NYIA-------PLGEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVK--QDDIVLASSF 80 (394)
T ss_dssp -CCHHHHHHHHHHH-TTTS-------CTTHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCC--TTCEEEEESS
T ss_pred CHHHHHHHHHHHHc-CCcc-------CCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCC--CCCEEEECCC
Confidence 47788888888875 2111 113568899999999999988999999999999999888 55 9999999999
Q ss_pred cchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848 110 NHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189 (514)
Q Consensus 110 ~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (514)
+|.+...+++..|.+++.++.++.
T Consensus 81 ~~~~~~~~~~~~g~~~~~v~~~~~-------------------------------------------------------- 104 (394)
T 1o69_A 81 TFIASVAPICYLKAKPVFIDCDET-------------------------------------------------------- 104 (394)
T ss_dssp SCGGGTHHHHHTTCEEEEECBCTT--------------------------------------------------------
T ss_pred ccHHHHHHHHHcCCEEEEEEeCCC--------------------------------------------------------
Confidence 999999888877777665543100
Q ss_pred ccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCC
Q psy16848 190 LYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269 (514)
Q Consensus 190 ~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~ 269 (514)
+ ..|.+.+++.+++.. +++++|++++
T Consensus 105 -------~--------------------------------------------~~d~~~l~~~i~~~~-~~~~~v~~~~-- 130 (394)
T 1o69_A 105 -------Y--------------------------------------------NIDVDLLKLAIKECE-KKPKALILTH-- 130 (394)
T ss_dssp -------S--------------------------------------------SBCHHHHHHHHHHCS-SCCCEEEEEC--
T ss_pred -------C--------------------------------------------CcCHHHHHHHHhccc-CCceEEEEEC--
Confidence 0 014555566555421 2478888875
Q ss_pred CCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC-eEEEec-HHHHHH
Q psy16848 270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG-GYIVGT-KNFIDT 347 (514)
Q Consensus 270 nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G-G~l~~~-~~~~~~ 347 (514)
|+|...++++|.++|+++|+++|+|++|++|... .+..... ..+.|+.++|.+|.+++.+ |+++++ +++++.
T Consensus 131 -~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~-~~~~~~~----~~~~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~ 204 (394)
T 1o69_A 131 -LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFY-KNKALGT----FGEFGVYSYNGNKIITTSGGGMLIGKNKEKIEK 204 (394)
T ss_dssp -GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEE-TTEETTS----SSSEEEEECCTTSSSCCSSCEEEEESCHHHHHH
T ss_pred -CCCChhhHHHHHHHHHHcCCEEEEECcCccccee-CCccccc----ccCcEEEEEeCCccCCCCCceEEEECCHHHHHH
Confidence 7999999999999999999999999999965431 1111111 1257888777799997633 999995 788888
Q ss_pred HHhhcCceE------------eccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCC----C
Q psy16848 348 IRSYAAGFI------------FTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTP----S 411 (514)
Q Consensus 348 l~~~~~~~~------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~ 411 (514)
+........ +..+.++..++++...++ .+++..++.+++++++.+.|++. +.+..+. +
T Consensus 205 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~-----~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~ 278 (394)
T 1o69_A 205 ARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQME-----VLEQRVLKKREIYEWYKEFLGEY-FSFLDELENSRS 278 (394)
T ss_dssp HHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHTTT-EECCCCCTTEEC
T ss_pred HHHHHHhccccCccccccccCcccCcCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccc-ccccCCCCCCcc
Confidence 765432210 111145555555544443 34457788899999999999887 5544331 2
Q ss_pred c--EEEEEeCCC---------------------ccHHHHHHHHHHhCCeEEecccCCC--CCC--C-------------C
Q psy16848 412 H--IIPIKIGNP---------------------ALNTKICDMLLKEKGHYVQPINYPT--VPV--G-------------E 451 (514)
Q Consensus 412 ~--~~~i~l~~~---------------------~~~~~~~~~Ll~~~GI~v~~~~~~~--~~~--~-------------~ 451 (514)
. ++.+.++.. .+..++.+.|. ++||.+++++.|. .+. . .
T Consensus 279 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 357 (394)
T 1o69_A 279 NRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLK-NKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQ 357 (394)
T ss_dssp CCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHH-HTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHH
T ss_pred eeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHH-HcCCcccccCCccccchhhhccCCCCChHHHHHhc
Confidence 2 466777642 25678889995 8999999885431 110 0 1
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848 452 EKIRLAPTPFHTREMIDKFVTDLLAVWKS 480 (514)
Q Consensus 452 ~~iRl~~~~~~t~e~id~~~~~l~~~l~~ 480 (514)
+.+++..+..+|++|+++++++|+++++.
T Consensus 358 ~~~~~~~~~~~t~edi~~~~~~l~~~~~~ 386 (394)
T 1o69_A 358 KGICLPSGTAMSKDDVYEISKLILKSIKA 386 (394)
T ss_dssp HEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred CeEEccCCCCCCHHHHHHHHHHHHHHHhc
Confidence 45677778889999999999999987643
No 205
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.91 E-value=1.7e-23 Score=213.93 Aligned_cols=206 Identities=14% Similarity=0.039 Sum_probs=157.9
Q ss_pred CCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC-
Q psy16848 257 VKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG- 335 (514)
Q Consensus 257 ~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G- 335 (514)
++++++|++++++||||.++|+++|.++ +|+++|+|++|+.+.. +. .. .+.|++++|+||++|+.|
T Consensus 163 ~~~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~--------~~-~~-~~~di~~~s~sK~~~~~gg 229 (398)
T 2fyf_A 163 DPSVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGL--------PV-DI-AETDAYYFAPQKNFASDGG 229 (398)
T ss_dssp CTTCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTS--------CC-CG-GGCSEEEECTTSTTCSCSS
T ss_pred cCCCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCc--------cc-Cc-ccCcEEEEecCcccCCCCc
Confidence 4568999999999999999998888877 8999999999986542 11 11 147899999999998864
Q ss_pred -eEEEecHHHHHHHHhhc--------------------CceEeccCCcHHHHHHHHHHHHHhhhch-HHHHHHHHHHHHH
Q psy16848 336 -GYIVGTKNFIDTIRSYA--------------------AGFIFTTSLPPTVLAGAREAIRILSSQE-GVELRAKHQDIVA 393 (514)
Q Consensus 336 -G~l~~~~~~~~~l~~~~--------------------~~~~~~~~~~~~~~~a~~~~l~~~~~~~-~~~~~~~~~~~~~ 393 (514)
|++++++++++.+.... .... ..+.+...+.++.++++.+.+.+ +++++++++++++
T Consensus 230 ~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~ 308 (398)
T 2fyf_A 230 LWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQT-YNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQ 308 (398)
T ss_dssp EEEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCC-SSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred eEEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCC-CCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 88899999888774321 0111 12456666777788888765444 7889999999999
Q ss_pred HHHHHHHhC-CCcccc--C--CCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHH
Q psy16848 394 YLRNELIQI-GFPVEH--T--PSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI 467 (514)
Q Consensus 394 ~l~~~L~~~-g~~~~~--~--~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~i 467 (514)
++.+.|+++ |+.+.. + .++ ++++.++++.+..++.+.|. ++||.++++.. ..+.+++|++++..++++|+
T Consensus 309 ~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~gI~v~~g~~---~~~~~~iRis~~~~~t~e~i 384 (398)
T 2fyf_A 309 RLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDVDAGTVAKILR-ANGIVDTEPYR---KLGRNQLRVAMFPAVEPDDV 384 (398)
T ss_dssp HHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTTSCHHHHHHHHH-HTTCBCCSCCT---TTCSSEEEEECCTTSCHHHH
T ss_pred HHHHHHHHcCCceeccCChhhcCCcEEEEECCCCCCHHHHHHHHH-HCCcEEecCcc---cCCCCEEEEEecCCCCHHHH
Confidence 999999998 777653 3 345 78888876556789999996 78999987532 12357999999988999999
Q ss_pred HHHHHHHHHHHHH
Q psy16848 468 DKFVTDLLAVWKS 480 (514)
Q Consensus 468 d~~~~~l~~~l~~ 480 (514)
++++++|++++++
T Consensus 385 ~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 385 SALTECVDWVVER 397 (398)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998765
No 206
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.91 E-value=2e-22 Score=208.73 Aligned_cols=327 Identities=15% Similarity=0.114 Sum_probs=218.2
Q ss_pred CCceeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhc
Q psy16848 16 SNRVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL 95 (514)
Q Consensus 16 ~g~~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l 95 (514)
+|+.+|.+...++ ++++.+++.+++.... +...+...++++.+++++|.+++++++|||+|+..++.++
T Consensus 29 ~~~~~i~~~~~~~--~~~~~~a~~~~~~~~~---------~~~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~al~~l 97 (437)
T 3bb8_A 29 AGKSVVPPSGKVI--GTKELQLMVEASLDGW---------LTTGRFNDAFEKKLGEYLGVPYVLTTTSGSSANLLALTAL 97 (437)
T ss_dssp TTTSCBCSCCCCC--CHHHHHHHHHHHHHCC---------CBSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHT
T ss_pred CCCccccCCCCCC--CHHHHHHHHHHHHcCC---------cCCChHHHHHHHHHHHHHCCCcEEEeCCHHHHHHHHHHHh
Confidence 3455666655544 6788999988887521 1123678999999999999999999999999999998887
Q ss_pred c-------ccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848 96 G-------KMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE 168 (514)
Q Consensus 96 ~-------~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
. ...+||.|+++.++|.+...+++..|++++.++.+. +
T Consensus 98 ~~~~~~~~~~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~-~---------------------------------- 142 (437)
T 3bb8_A 98 TSPKLGVRALKPGDEVITVAAGFPTTVNPTIQNGLIPVFVDVDI-P---------------------------------- 142 (437)
T ss_dssp TCGGGGGGSCCTTCEEEECSSSCHHHHHHHHHTTCEEEECCEET-T----------------------------------
T ss_pred hhcccccccCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEeccC-c----------------------------------
Confidence 2 034899999999999999988887777766554310 0
Q ss_pred HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848 169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL 248 (514)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l 248 (514)
.+ .-|.+.+
T Consensus 143 ---------------------------~~--------------------------------------------~~d~~~l 151 (437)
T 3bb8_A 143 ---------------------------TY--------------------------------------------NVNASLI 151 (437)
T ss_dssp ---------------------------TT--------------------------------------------EECGGGH
T ss_pred ---------------------------cC--------------------------------------------CcCHHHH
Confidence 00 0044455
Q ss_pred HHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc
Q psy16848 249 TQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG 328 (514)
Q Consensus 249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s 328 (514)
++.+ ++++++|++++ ++|...++++|.++|+++|+++|+|++|++|... .+ ...+ ...|+++.||+
T Consensus 152 ~~~i----~~~~~~v~~~~---~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~-~~----~~~~--~~~d~~~~s~~ 217 (437)
T 3bb8_A 152 EAAV----SDKTKAIMIAH---TLGNLFDLAEVRRVADKYNLWLIEDCCDALGSTY-DG----KMAG--TFGDIGTVSFY 217 (437)
T ss_dssp HHHC----CTTEEEEEEEC---GGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEE-TT----EETT--SSSSEEEEECS
T ss_pred HHhc----CCCCeEEEEeC---CCCChhcHHHHHHHHHHcCCEEEEECccccCceE-CC----eecc--cccCEEEEECc
Confidence 5444 34578888864 3466689999999999999999999999976532 11 1111 12578777875
Q ss_pred c--cccC-CCeEEEecHHHHH-HHHh---hcCc----------------------------------eEeccCCcHHHHH
Q psy16848 329 K--AFGN-IGGYIVGTKNFID-TIRS---YAAG----------------------------------FIFTTSLPPTVLA 367 (514)
Q Consensus 329 K--~lg~-~GG~l~~~~~~~~-~l~~---~~~~----------------------------------~~~~~~~~~~~~~ 367 (514)
| .+++ .||+++++++.+. .+.. .... .+++..+++..++
T Consensus 218 ~~k~l~~g~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa 297 (437)
T 3bb8_A 218 PAKHITMGEGGAVFTQSAELKSIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAA 297 (437)
T ss_dssp TTSSSCCSSCEEEEESCHHHHHHHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHH
T ss_pred CCcCCCCCCeEEEEeCCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHH
Confidence 4 4432 3488888855443 3221 1100 1112245677777
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccccCC------C-cEEEEEeCC--CccHHHHHHHHHHhCCe
Q psy16848 368 GAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEHTP------S-HIIPIKIGN--PALNTKICDMLLKEKGH 437 (514)
Q Consensus 368 a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~------~-~~~~i~l~~--~~~~~~~~~~Ll~~~GI 437 (514)
++.++++.+ ++..++.+++.+++.+.|+++ ++...+.. + ..+.+.+.. +.+..++.+.|. ++||
T Consensus 298 ~~l~~l~~~-----~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~GI 371 (437)
T 3bb8_A 298 CGLAQLERI-----EEFVEKRKANFKYLKDALQSCADFIELPEATENSDPSWFGFPITLKEDSGVSRIDLVKFLD-EAKV 371 (437)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHHHHHHGGGGTTTEECCCCCTTEECCCSSEEEEECGGGSSCHHHHHHHHH-HTTB
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHhhccCCccccCCCCCCCceeeEEEEEEECCcCcCcHHHHHHHHH-HCCC
Confidence 777777654 234555578888999999887 65433211 1 123333332 245788999995 8999
Q ss_pred EEecccCCCC---CC------------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848 438 YVQPINYPTV---PV------------------GEEKIRLAPTPFHTREMIDKFVTDLLAVWK 479 (514)
Q Consensus 438 ~v~~~~~~~~---~~------------------~~~~iRl~~~~~~t~e~id~~~~~l~~~l~ 479 (514)
.++++..+.. +. ..+.+|++++..+|++|+++++++|+++++
T Consensus 372 ~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~i~~~l~~~~~ 434 (437)
T 3bb8_A 372 GTRLLFAGNLTRQPYFHDVKYRVVGELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEFFG 434 (437)
T ss_dssp CCBCCTTSSGGGSGGGSSCCCEECSCCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHTT
T ss_pred ceeccCCcccccCchhhccCccccCCCcHHHHHhcCEEEecCCCCCCHHHHHHHHHHHHHHHc
Confidence 9987654211 10 023699999999999999999999998754
No 207
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.91 E-value=3.2e-23 Score=211.74 Aligned_cols=332 Identities=11% Similarity=-0.050 Sum_probs=215.0
Q ss_pred ceeeecccCCCC-------CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----Cc--EEEEecc
Q psy16848 18 RVTCRLSSVQYK-------VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EA--GLVFTSC 84 (514)
Q Consensus 18 ~~~~d~~~~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~--~i~~~sG 84 (514)
...||++-+.|. ..+.++++.. .++..+ ....+....|..++.+++.+++.+..+. ++ .+++++|
T Consensus 29 ~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~ 106 (405)
T 3k7y_A 29 EEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENY-KEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGG 106 (405)
T ss_dssp SSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHC-CCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHH
T ss_pred cCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCC-CCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCch
Confidence 467999755442 2356666655 331211 1223334456666666666666544332 22 2556667
Q ss_pred ccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCcc
Q psy16848 85 YVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC 164 (514)
Q Consensus 85 t~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
++|+..++.++....| |.|+++.++|......++.+|++++.++..+.
T Consensus 107 ~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~------------------------------- 154 (405)
T 3k7y_A 107 TGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRGFNLKYINFFDY------------------------------- 154 (405)
T ss_dssp HHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEET-------------------------------
T ss_pred HHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEecccc-------------------------------
Confidence 7777777776654347 99999999999999888888888776543100
Q ss_pred chhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCC
Q psy16848 165 PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHND 244 (514)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d 244 (514)
.+.+ -|
T Consensus 155 -----------------------------~~~~---------------------------------------------~d 160 (405)
T 3k7y_A 155 -----------------------------NLID---------------------------------------------IN 160 (405)
T ss_dssp -----------------------------TTTE---------------------------------------------EC
T ss_pred -----------------------------ccCC---------------------------------------------cC
Confidence 0000 05
Q ss_pred hhHHHHHHhhccCCCceEEEEec-CCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCC---CCccccCCCc
Q psy16848 245 VNHLTQVLENMDVKIPKLVAFET-VHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHG---AGIGERDGQL 317 (514)
Q Consensus 245 ~~~l~~~l~~~~~~~~~~vv~~~-~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~---~~~~~~~~~~ 317 (514)
++.+++.+.+. ++++++++++ +|||||.+++ +++|.++|++|++++|+||+|.....+... .++..... .
T Consensus 161 ~~~l~~~l~~~--~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~-~ 237 (405)
T 3k7y_A 161 YDLFLNDLRNI--PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEE-K 237 (405)
T ss_dssp HHHHHHHHHHS--CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHT-T
T ss_pred HHHHHHHHHhC--CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHh-c
Confidence 56666666542 2356777765 5899999999 788999999999999999999843332110 01111111 1
Q ss_pred cCceEEEcCCcccccCCC---eEEEe---cHHHHHHHHh----hcCceEeccCCcHHHHHHHHHHHHHh-----hhchHH
Q psy16848 318 HNMDIISGTLGKAFGNIG---GYIVG---TKNFIDTIRS----YAAGFIFTTSLPPTVLAGAREAIRIL-----SSQEGV 382 (514)
Q Consensus 318 ~~~di~~~S~sK~lg~~G---G~l~~---~~~~~~~l~~----~~~~~~~~~~~~~~~~~a~~~~l~~~-----~~~~~~ 382 (514)
.+..+++.||||.++.+| ||+++ ++++++.+.. ..... ..+.+...+.++..+++.- ..+++.
T Consensus 238 ~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~ 315 (405)
T 3k7y_A 238 NIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKF--YSSPVIHTNRILCQLLNNQNLKLNWIKELS 315 (405)
T ss_dssp TCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTT--TSSCCHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CCcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcc--cCCCcHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 256899999999999778 99753 5666554432 11111 1134566666666666531 123456
Q ss_pred HHHHHHHHHHHHHHHHHH----hCC----CccccCCCcEE-EEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcE
Q psy16848 383 ELRAKHQDIVAYLRNELI----QIG----FPVEHTPSHII-PIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEK 453 (514)
Q Consensus 383 ~~~~~~~~~~~~l~~~L~----~~g----~~~~~~~~~~~-~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~ 453 (514)
+++++++++++.+.+.|+ ++| +.+..+.++|| ++.++. +++.+| +++||++.|+
T Consensus 316 ~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~-----~~~~~L-~~~gV~v~p~----------- 378 (405)
T 3k7y_A 316 QLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA-----KIAEHL-KTHHIYIINN----------- 378 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG-----GGTTTT-TTTTEECCTT-----------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCH-----HHHHHH-HHCCEeecCC-----------
Confidence 778889999999999999 776 46667777744 444432 445677 6999998752
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848 454 IRLAPTPFHTREMIDKFVTDLLAVWKS 480 (514)
Q Consensus 454 iRl~~~~~~t~e~id~~~~~l~~~l~~ 480 (514)
-|++++ ..+++++++++++|++++++
T Consensus 379 ~Ris~a-~~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 379 GRINVS-GITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp SEEEGG-GCCTTHHHHHHHHHHHHHHC
T ss_pred CeEEEe-ccCHHHHHHHHHHHHHHHhh
Confidence 199997 46789999999999998875
No 208
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.91 E-value=6.3e-23 Score=211.26 Aligned_cols=287 Identities=16% Similarity=0.138 Sum_probs=190.2
Q ss_pred chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848 59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ 138 (514)
Q Consensus 59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~ 138 (514)
.+..+++++++++++|.+++++++||++|+..++.++.. +||+|+++.+.|.++...+..
T Consensus 57 ~~~~~~l~~~la~~~g~~~~v~~~sGt~A~~~~l~~~~~--~gd~vi~~~~~~~~~~~~~~~------------------ 116 (421)
T 2ctz_A 57 NPTVDVLEKRLAALEGGKAALATASGHAAQFLALTTLAQ--AGDNIVSTPNLYGGTFNQFKV------------------ 116 (421)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEECSCCCHHHHHHHHT------------------
T ss_pred ChHHHHHHHHHHHHhCCCceEEecCHHHHHHHHHHHHhC--CCCEEEEeCCCchHHHHHHHH------------------
Confidence 467899999999999998899999999999999988865 999999999999998755410
Q ss_pred HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848 139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP 218 (514)
Q Consensus 139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~ 218 (514)
T Consensus 117 -------------------------------------------------------------------------------- 116 (421)
T 2ctz_A 117 -------------------------------------------------------------------------------- 116 (421)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeecchHHHHhhCCCCEEEe-cCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecc
Q psy16848 219 EVAIHASMIQGIRNSSAPKIIY-RHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV 297 (514)
Q Consensus 219 ~v~~~~~~~~~~~~~g~~~~~v-~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea 297 (514)
.+...|++++.+ +.+|.+.+++.++ +++++|++++++||+|.+.|+++|.++|+++|+++|+|++
T Consensus 117 ----------~~~~~g~~~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~ 182 (421)
T 2ctz_A 117 ----------TLKRLGIEVRFTSREERPEEFLALTD----EKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNT 182 (421)
T ss_dssp ----------HHHHTTCEEEECCTTCCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECG
T ss_pred ----------HHHHcCCEEEEECCCCCHHHHHHhhc----cCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECC
Confidence 011234444455 4445555444443 4689999999999999999999999999999999999999
Q ss_pred c-cccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEec--HHH----HHHHHhhcC-------------
Q psy16848 298 H-AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGT--KNF----IDTIRSYAA------------- 353 (514)
Q Consensus 298 ~-~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~--~~~----~~~l~~~~~------------- 353 (514)
| +++..+. .. ..++|++++|+||+++++| |+++.+ +++ .+.+.....
T Consensus 183 ~~~~g~~~~-------~~--~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~ 253 (421)
T 2ctz_A 183 FGMGGYLLR-------PL--AWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGE 253 (421)
T ss_dssp GGGGGTSCC-------GG--GGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGG
T ss_pred cccccccCC-------cc--ccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcch
Confidence 9 7664321 11 2368999999999998633 444442 222 222321100
Q ss_pred -----------ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc--------------
Q psy16848 354 -----------GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE-------------- 407 (514)
Q Consensus 354 -----------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-------------- 407 (514)
...++..+++..++++...++.+ ....++..++.+++.+.|++. ++..+
T Consensus 254 ~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l-----~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~ 328 (421)
T 2ctz_A 254 LAFIVKARVDGLRDQGQALGPFEAWVVLLGMETL-----SLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRA 328 (421)
T ss_dssp GHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTH-----HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHH
T ss_pred hHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchH-----HHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHH
Confidence 00112355666666665555533 345666668889999999886 55432
Q ss_pred -----cCCCcEEEEEeCCC-ccHHHHHHHHHHhCCeEEecccC------CC------CC--------CCCcEEEEEeCCC
Q psy16848 408 -----HTPSHIIPIKIGNP-ALNTKICDMLLKEKGHYVQPINY------PT------VP--------VGEEKIRLAPTPF 461 (514)
Q Consensus 408 -----~~~~~~~~i~l~~~-~~~~~~~~~Ll~~~GI~v~~~~~------~~------~~--------~~~~~iRl~~~~~ 461 (514)
...++++.+.+.+. .....+.+.+ +..++.++.+.. |. .+ ..++.+|++++.
T Consensus 329 ~~~~~~~~g~ivsf~l~~~~~~~~~~~~~l-~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~- 406 (421)
T 2ctz_A 329 QKYFKGKPGAVLTFGLKGGYEAAKRFISRL-KLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL- 406 (421)
T ss_dssp HHHHTTCCCSEEEEEETTHHHHHHHHHHTC-SSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS-
T ss_pred HHhccCCCceEEEEEeCCCHHHHHHHHHhC-CcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCC-
Confidence 13466899998752 2334455555 244544443311 10 00 125899999985
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy16848 462 HTREMIDKFVTDLLAVW 478 (514)
Q Consensus 462 ~t~e~id~~~~~l~~~l 478 (514)
++++.+++.|++++
T Consensus 407 ---e~~~~li~~l~~al 420 (421)
T 2ctz_A 407 ---EHVEDLKAELKEAL 420 (421)
T ss_dssp ---SCHHHHHHHHHHHT
T ss_pred ---CCHHHHHHHHHHHh
Confidence 46666666666543
No 209
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.91 E-value=3.7e-22 Score=205.76 Aligned_cols=318 Identities=15% Similarity=0.093 Sum_probs=218.7
Q ss_pred CCCCCChhHHHHHHHHHHHhCCCCCCcCcccCc-chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceE
Q psy16848 26 VQYKVPKGGRKCLGEALEKFGTGAGGTRNISGN-SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHY 104 (514)
Q Consensus 26 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v 104 (514)
.++..++++.+++.++++. +. ++. .+...++++.++++++.+++++++|||+|+..++.++. +||.|
T Consensus 26 p~~~~p~~~~~a~~~~~~~-~~--------y~~~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~l~~l~---~gd~V 93 (424)
T 2po3_A 26 PNRIDRARLYERLDRALDS-QW--------LSNGGPLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAG---LTGEV 93 (424)
T ss_dssp CCCCCHHHHHHHHHHHHHH-TC--------CSSSCHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHT---CCSEE
T ss_pred CCCCChHHHHHHHHHHHhc-CC--------cccCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC---CCCEE
Confidence 3333456899999888875 21 222 46788999999999999988999999999999998874 78999
Q ss_pred EecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeec
Q psy16848 105 ISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDE 184 (514)
Q Consensus 105 ~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (514)
+++.++|.+...+++..|.+++.++.+.
T Consensus 94 lv~~~~~~~~~~~~~~~G~~~~~v~~~~---------------------------------------------------- 121 (424)
T 2po3_A 94 IMPSMTFAATPHALRWIGLTPVFADIDP---------------------------------------------------- 121 (424)
T ss_dssp EEESSSCTHHHHHHHHTTCEEEEECBCT----------------------------------------------------
T ss_pred EECCCccHHHHHHHHHcCCEEEEEecCC----------------------------------------------------
Confidence 9999999999887777777666544310
Q ss_pred cccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEE
Q psy16848 185 VHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVA 264 (514)
Q Consensus 185 ~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv 264 (514)
+++..+.+.+++..++++++|+
T Consensus 122 ----------------------------------------------------------~~~~~d~~~l~~~i~~~~~~v~ 143 (424)
T 2po3_A 122 ----------------------------------------------------------DTGNLDPDQVAAAVTPRTSAVV 143 (424)
T ss_dssp ----------------------------------------------------------TTSSBCHHHHGGGCCTTEEEEE
T ss_pred ----------------------------------------------------------CcCCcCHHHHHHhhCcCCcEEE
Confidence 0111122333444445688888
Q ss_pred EecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc--ccccC-CCeEEEec
Q psy16848 265 FETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG--KAFGN-IGGYIVGT 341 (514)
Q Consensus 265 ~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s--K~lg~-~GG~l~~~ 341 (514)
+++ |+|...++++|.++|+++|+++|+|++|++|.. ..+.++ .. ..|++++||| |++++ .||+++++
T Consensus 144 ~~~---~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~-~~~~~~---~~---~~di~~~S~sk~K~l~~~~~G~~v~~ 213 (424)
T 2po3_A 144 GVH---LWGRPCAADQLRKVADEHGLRLYFDAAHALGCA-VDGRPA---GS---LGDAEVFSFHATKAVNAFEGGAVVTD 213 (424)
T ss_dssp EEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCE-ETTEET---TS---SSSEEEEECCTTSSSCCSSCEEEEES
T ss_pred EEC---CCCCcCCHHHHHHHHHHcCCEEEEECccccCCe-ECCeec---cc---ccCEEEEeCCCCCCccCCCCeEEEeC
Confidence 754 899999999999999999999999999996543 111111 11 2468888998 88866 33999988
Q ss_pred -HHHHHHHHhhcCce----------EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcccc-
Q psy16848 342 -KNFIDTIRSYAAGF----------IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEH- 408 (514)
Q Consensus 342 -~~~~~~l~~~~~~~----------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~- 408 (514)
+++++.+....... +.+...++..++++...++ .+++..++.+++.+++.+.|+++ ++.+..
T Consensus 214 ~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~-----~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 288 (424)
T 2po3_A 214 DADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLD-----AFPEVIDRNRRNHAAYREHLADLPGVLVADH 288 (424)
T ss_dssp CHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTCSCTTEEECCG
T ss_pred CHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCCCccccCC
Confidence 78888776543211 0112344555555444333 34457778888888999999887 766543
Q ss_pred CCC-----cEEEEEeCC---CccHHHHHHHHHHhCCeEEecccCCCCC-------C-----------CCcEEEEEeCCCC
Q psy16848 409 TPS-----HIIPIKIGN---PALNTKICDMLLKEKGHYVQPINYPTVP-------V-----------GEEKIRLAPTPFH 462 (514)
Q Consensus 409 ~~~-----~~~~i~l~~---~~~~~~~~~~Ll~~~GI~v~~~~~~~~~-------~-----------~~~~iRl~~~~~~ 462 (514)
+.+ .++.+.+++ +.+..++.+.| .++||.+.+...+... . ..+.+|+++...+
T Consensus 289 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~L-~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~ 367 (424)
T 2po3_A 289 DRHGLNNHQYVIVEIDEATTGIHRDLVMEVL-KAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAI 367 (424)
T ss_dssp GGGSCCCCCCEEEEECHHHHSSCHHHHHHHH-HHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTC
T ss_pred CCCCccccEEEEEEECCccchhhHHHHHHHH-HHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCC
Confidence 221 355576663 34577888888 4899999862210100 0 0123888877899
Q ss_pred CHHHHHHHHHHHHHHHHHc
Q psy16848 463 TREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 463 t~e~id~~~~~l~~~l~~~ 481 (514)
+++|+++++++|++++++.
T Consensus 368 t~e~i~~~~~~L~~~~~~~ 386 (424)
T 2po3_A 368 GDDDIRRVADLLRLCATRG 386 (424)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhh
Confidence 9999999999999987654
No 210
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.90 E-value=1.9e-23 Score=215.43 Aligned_cols=319 Identities=12% Similarity=0.032 Sum_probs=214.6
Q ss_pred eeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCccc-CcchHHHHHHHHHHhHcC--------CCcEEEEeccccc
Q psy16848 19 VTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNIS-GNSLFHEKLEEDVAKLHQ--------KEAGLVFTSCYVA 87 (514)
Q Consensus 19 ~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~--------~~~~i~~~sGt~a 87 (514)
..+|+..++. ..++.+.+++.+.+...+....++.... | .....++++.++++++ .++.+++++++++
T Consensus 57 ~~i~l~~g~~~~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G-~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~a 135 (427)
T 2hox_A 57 CSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVS-NFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQL 135 (427)
T ss_dssp CCEECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCC-TTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHH
T ss_pred ceEEecCcCCCCCCCHHHHHhHHhhhhcCCcccccCCCCCCC-ccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHH
Confidence 3566643322 2234566666665532222111121122 3 1113556666666653 2345555666778
Q ss_pred cccchhhc--------cccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccc
Q psy16848 88 NDSTLFTL--------GKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159 (514)
Q Consensus 88 ~~~~l~~l--------~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~ 159 (514)
+..++.++ .. +||.|+++.++|......++..|.+++.+.. |.+.|
T Consensus 136 l~~~~~~l~~~~~~~~~~--~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-d~~~l----------------------- 189 (427)
T 2hox_A 136 IHGLVISLSPNMTATPDA--PESKVVAHAPFYPVFREQTKYFDKKGYVWAG-NAANY----------------------- 189 (427)
T ss_dssp HHHHHHHHSCCTTTCTTS--CCEEEEECSSCCHHHHHHHHHSCBTTEEEEE-EGGGG-----------------------
T ss_pred HHHHHHHHhhccccccCC--CCCEEEEeCCCcccHHHHHHHcCCeeeeecC-CHHHH-----------------------
Confidence 88888888 55 9999999999999998888887777654322 22222
Q ss_pred cCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEE
Q psy16848 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKII 239 (514)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~ 239 (514)
T Consensus 190 -------------------------------------------------------------------------------- 189 (427)
T 2hox_A 190 -------------------------------------------------------------------------------- 189 (427)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccC
Q psy16848 240 YRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHN 319 (514)
Q Consensus 240 v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~ 319 (514)
++..+++++++++++|+||||.+++ + + ++ ++..+.|+++.. ...++... ..+
T Consensus 190 -------------~~~~~~~~k~v~l~~p~NPtG~~~~-~-~---l~--~~~~i~d~~~~~-----~~~s~~~~---~~~ 241 (427)
T 2hox_A 190 -------------VNVSNPEQYIEMVTSPNNPEGLLRH-A-V---IK--GCKSIYDMVYYW-----PHYTPIKY---KAD 241 (427)
T ss_dssp -------------TTCSCGGGEEEEEESSCTTTCCCCC-C-S---ST--TCEEEEECTTCS-----TTTSCCCS---CBC
T ss_pred -------------HHhhcCCceEEEEcCCCCCcccccH-H-H---Hc--CCCEEEeecccC-----CCCCcccc---CCC
Confidence 1222335789999999999999999 3 2 22 567888887742 11122222 246
Q ss_pred ceEEEcCCcccccCCC---eEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhh----------hchHHHHH
Q psy16848 320 MDIISGTLGKAFGNIG---GYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS----------SQEGVELR 385 (514)
Q Consensus 320 ~di~~~S~sK~lg~~G---G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----------~~~~~~~~ 385 (514)
.+++++||||.+|.+| ||+++ ++++++.+....... ..+.+.+.+.++..+|+... ...+.+.+
T Consensus 242 ~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~~~~--~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~ 319 (427)
T 2hox_A 242 EDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKN--TEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGF 319 (427)
T ss_dssp CSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHH--TSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHH
T ss_pred ceEEEEeChhcCCCCCceEEEEEECCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHH
Confidence 8999999999999767 99999 589998887765433 33677888877777776431 34566788
Q ss_pred HHHHHHHHHHHHHHHhC-CCcc--c------------cCC-CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCC
Q psy16848 386 AKHQDIVAYLRNELIQI-GFPV--E------------HTP-SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV 449 (514)
Q Consensus 386 ~~~~~~~~~l~~~L~~~-g~~~--~------------~~~-~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~ 449 (514)
++++++++++.+.|++. |+.+ . .+. +.++++.++. +..++++.+++++||.++++..|..
T Consensus 320 ~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~--~~~~~~~~ll~~~gI~v~pg~~f~~-- 395 (427)
T 2hox_A 320 KKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW--EEDKDCYQTFQNGRINTQNGVGFEA-- 395 (427)
T ss_dssp HHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS--GGGCSHHHHHHHTTEECEEGGGGTS--
T ss_pred HHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCC--cHHHHHHHHHHHCCEEEcCCCccCC--
Confidence 89999999999999987 6554 1 122 4567788865 3456778876689999999986543
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848 450 GEEKIRLAPTPFHTREMIDKFVTDLLAVWKS 480 (514)
Q Consensus 450 ~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~ 480 (514)
+++++|++++ .+++++++++++|++++++
T Consensus 396 ~~~~~Ris~~--~~~e~l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 396 SSRYVRLSLI--KTQDDFDQLMYYLKDMVKA 424 (427)
T ss_dssp CTTEEEEECS--SCHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEec--CCHHHHHHHHHHHHHHHhh
Confidence 5689999998 4889999999999988743
No 211
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.90 E-value=2.8e-22 Score=211.00 Aligned_cols=308 Identities=12% Similarity=0.089 Sum_probs=204.0
Q ss_pred chHHHHHHHHHHhHcCC---CcEEEEeccccccccchhhccc--c---------CC------Cc-eEEecCccchhhhhh
Q psy16848 59 SLFHEKLEEDVAKLHQK---EAGLVFTSCYVANDSTLFTLGK--M---------IP------GL-HYISDAGNHASMIQG 117 (514)
Q Consensus 59 ~~~~~~~~~~la~~~~~---~~~i~~~sGt~a~~~~l~~l~~--~---------~~------gd-~v~~~~~~h~~~~~~ 117 (514)
.++.+++++++++++|. +.+++++|||+|+..++.++.. . .+ |+ .|+++...|.++..+
T Consensus 139 ~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~ 218 (497)
T 2qma_A 139 TYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKS 218 (497)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHH
Confidence 34555667779999986 3567788899999888877310 0 02 46 899999999999988
Q ss_pred hhcCCC---CeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccC
Q psy16848 118 IRNSSA---PKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEH 194 (514)
Q Consensus 118 ~~~~~~---~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 194 (514)
++..|. +++.++.++
T Consensus 219 ~~~~g~g~~~v~~v~~~~-------------------------------------------------------------- 236 (497)
T 2qma_A 219 ASWMGLGEKAVMTVDANA-------------------------------------------------------------- 236 (497)
T ss_dssp HHHTTSCGGGEEEECBCT--------------------------------------------------------------
T ss_pred HHHcCCCcccEEEEecCC--------------------------------------------------------------
Confidence 887765 455444320
Q ss_pred CCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCC--ceEEEEecCCCCC
Q psy16848 195 GAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKI--PKLVAFETVHSMT 272 (514)
Q Consensus 195 ~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~--~~~vv~~~~~npt 272 (514)
.+ .-|.+.+++.+++..... +.+|++++++|++
T Consensus 237 -~~--------------------------------------------~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~t 271 (497)
T 2qma_A 237 -DG--------------------------------------------TMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDH 271 (497)
T ss_dssp -TS--------------------------------------------SBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTT
T ss_pred -CC--------------------------------------------cCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCC
Confidence 00 014555555555432222 3478889999999
Q ss_pred ccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCC-C-eEEEec-HHHHHHHH
Q psy16848 273 GAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI-G-GYIVGT-KNFIDTIR 349 (514)
Q Consensus 273 G~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~-G-G~l~~~-~~~~~~l~ 349 (514)
|.+.|+++|.++|++||+++++|++|+.+........ ...++ ..+|+++.|+||+++.+ | |+++.+ +..++.+.
T Consensus 272 G~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~--~~~gi-~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~~~~~ 348 (497)
T 2qma_A 272 GAIDDLDFIADMAVKHDMWMHVDGAYGGALILSSHKS--RLKGV-ERAHSISVDFHKLFYQTISCGALLVNDKSNFKFLL 348 (497)
T ss_dssp CCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGSTTGG--GGTTG-GGCSEEEEETTTTTCCCSSCEEEEESCGGGGGGGC
T ss_pred CCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCcchH--hhcCc-ccCCEEEEcchhccCCCcceEEEEEeCHHHHHHhc
Confidence 9999999999999999999999999995543211110 12222 36799999999988653 3 777765 44343332
Q ss_pred hhcCceEeccC---CcHH----------HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc-cCCCcEE
Q psy16848 350 SYAAGFIFTTS---LPPT----------VLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE-HTPSHII 414 (514)
Q Consensus 350 ~~~~~~~~~~~---~~~~----------~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~ 414 (514)
.. ..+..... .+.. .......+++.+..++++++.++..++++++.+.|++. ++++. .+..+++
T Consensus 349 ~~-~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v 427 (497)
T 2qma_A 349 HH-ADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTV 427 (497)
T ss_dssp C---------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCSSSEE
T ss_pred CC-chhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCCceEE
Confidence 11 11111100 1111 11223445665555677788999999999999999987 77764 4556688
Q ss_pred EEEeCCCc-----cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEe-CCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 415 PIKIGNPA-----LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP-TPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 415 ~i~l~~~~-----~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~-~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
.+++.... ...++.+.+. ++|+.+.+... ..+..++|+++ +..+|++|++++++.|+++++++
T Consensus 428 ~f~~~~~~~~~~~l~~~l~~~l~-~~G~~~~~~~~---~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 428 LFRATHETADLDELNKALRLEAL-TRGIAVLGETI---VDGKTALKFTILNPCLTTSDFESLLSKINMLAVEL 496 (497)
T ss_dssp EEEECCSSSCHHHHHHHHHHHHH-HHTSCBCEEEE---ETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEcCCccCHHHHHHHHHHHHH-hCCCEEEEeeE---ECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 88875421 1345667775 88988764332 12356899998 78899999999999999988764
No 212
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.90 E-value=1.1e-22 Score=215.80 Aligned_cols=223 Identities=11% Similarity=0.043 Sum_probs=149.6
Q ss_pred HHhhccCCCceEEEEecCCCCCccccC---HHHHHHHH--HHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEc
Q psy16848 251 VLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVS--HQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG 325 (514)
Q Consensus 251 ~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~--~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~ 325 (514)
.+++...++++++++++|+||||.+++ +++|.++| +++|+++|+||+|+....+ ..++... ..+.++++.
T Consensus 237 ~l~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~--~~s~~~~---~~~~~i~~~ 311 (546)
T 2zy4_A 237 ELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD--FQSLFAI---CPENTLLVY 311 (546)
T ss_dssp HHGGGGSTTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT--CCCHHHH---CGGGEEEEE
T ss_pred HHHHhhCCCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc--CcCHHHh---CCCCEEEEE
Confidence 334434567899999999999999999 67788998 7789999999999944322 2222221 235789999
Q ss_pred CCcccccCCC---eEEEecHH-HHHHHHhhc------------Cc----------------------eEeccCCcHHHHH
Q psy16848 326 TLGKAFGNIG---GYIVGTKN-FIDTIRSYA------------AG----------------------FIFTTSLPPTVLA 367 (514)
Q Consensus 326 S~sK~lg~~G---G~l~~~~~-~~~~l~~~~------------~~----------------------~~~~~~~~~~~~~ 367 (514)
||||.+|.+| ||++++++ +++.+.... .. ...+.+.+.+.+.
T Consensus 312 S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~ 391 (546)
T 2zy4_A 312 SFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQV 391 (546)
T ss_dssp ESTTTTTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHH
T ss_pred eCccccCCCCcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHH
Confidence 9999998778 99998875 777663211 00 0012245555554
Q ss_pred HHH--HHHHHhh--hchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCc-EEEEEeCC----------------CccHHH
Q psy16848 368 GAR--EAIRILS--SQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSH-IIPIKIGN----------------PALNTK 426 (514)
Q Consensus 368 a~~--~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~i~l~~----------------~~~~~~ 426 (514)
++. +....+. +.+.+++++.++++++.+.+.|. .++.+..+.++ ++++.++. +.+..+
T Consensus 392 a~a~~a~~all~~~~~~~~~~r~~~~~r~~~l~~~L~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~ 470 (546)
T 2zy4_A 392 QMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELG-MPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGD 470 (546)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHGGGT-SSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC-CCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHH
Confidence 421 1112221 34567788888888888888875 45544445555 45676642 011234
Q ss_pred HHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848 427 ICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 427 ~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~ 482 (514)
+...+++++||.+.||..+.. +.+++|++++ ..+++++++++++|+++++++.
T Consensus 471 ~l~~ll~~~gV~v~pG~~F~~--~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~~~ 523 (546)
T 2zy4_A 471 MLFRIADETGIVLLPGRGFGS--NRPSGRASLA-NLNEYEYAAIGRALRKMADELY 523 (546)
T ss_dssp HHHHHHHHHSCCCEESSCTTC--SSCEEEEESS-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEeCccccCC--CCCeEEEEec-cCCHHHHHHHHHHHHHHHHHHH
Confidence 334444699999999997653 4578999998 4579999999999999887654
No 213
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.90 E-value=4.7e-22 Score=202.65 Aligned_cols=309 Identities=14% Similarity=0.095 Sum_probs=213.6
Q ss_pred ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhcc-----ccCCCceEE
Q psy16848 31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLG-----KMIPGLHYI 105 (514)
Q Consensus 31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~-----~~~~gd~v~ 105 (514)
+|++.+++.+++.... +...+...++++.+++++|.+++++++|||+|+..++.++. ...+||+|+
T Consensus 14 ~~~~~~a~~~~~~~~~---------~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi 84 (390)
T 3b8x_A 14 DDLEYKAIQSVLDSKM---------FTMGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEII 84 (390)
T ss_dssp CHHHHHHHHHHHHHTC---------CSSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEE
T ss_pred CHHHHHHHHHHHHcCC---------CCCChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEE
Confidence 6888999999887621 12246789999999999999999999999999999998872 134899999
Q ss_pred ecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecc
Q psy16848 106 SDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV 185 (514)
Q Consensus 106 ~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (514)
++.++|.++..+++..|.+++.++.+. +
T Consensus 85 ~~~~~~~~~~~~~~~~g~~~~~~~~~~-~--------------------------------------------------- 112 (390)
T 3b8x_A 85 VPAVSWSTTYYPLQQYGLRVKFVDIDI-N--------------------------------------------------- 112 (390)
T ss_dssp EESSSCHHHHHHHHHTTCEEEEECBCT-T---------------------------------------------------
T ss_pred ECCCCcHHHHHHHHHcCCEEEEEecCc-c---------------------------------------------------
Confidence 999999999988887777766554320 0
Q ss_pred ccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEE
Q psy16848 186 HAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAF 265 (514)
Q Consensus 186 ~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~ 265 (514)
.+ .-|.+.+++.+ ++++++|++
T Consensus 113 ----------~~--------------------------------------------~~d~~~l~~~i----~~~~~~v~~ 134 (390)
T 3b8x_A 113 ----------TL--------------------------------------------NIDIESLKEAV----TDSTKAILT 134 (390)
T ss_dssp ----------TC--------------------------------------------SBCHHHHHHHC----CTTEEEEEE
T ss_pred ----------cc--------------------------------------------CcCHHHHHHHh----CcCCeEEEE
Confidence 00 00344444444 345788887
Q ss_pred ecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCC--ccccc-CCCeEEEecH
Q psy16848 266 ETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL--GKAFG-NIGGYIVGTK 342 (514)
Q Consensus 266 ~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~--sK~lg-~~GG~l~~~~ 342 (514)
++ ++|...++++|.++|+++|+++|+|++|+.|... .+ ...+. ..|+.++|+ +|.++ +.||++++++
T Consensus 135 ~~---~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~-~~----~~~g~--~~~~~~~s~~~~k~~~~g~gG~~~~~~ 204 (390)
T 3b8x_A 135 VN---LLGNPNNFDEINKIIGGRDIILLEDNCESMGATF-NN----KCAGT--FGLMGTFSSFYSNHIATMEGGCIVTDD 204 (390)
T ss_dssp EC---GGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEE-TT----EETTS--SSSEEEEECCTTSSSCSSSCEEEEESC
T ss_pred EC---CccChhhHHHHHHHHHHcCCEEEEECcCcccCEE-CC----ccccc--ccceEEEEccCCCCCccCCceEEEeCC
Confidence 64 5688889999999999999999999999976542 11 11121 235554443 45553 3468888875
Q ss_pred -HHHHHHHhhcC-c----------------------------eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q psy16848 343 -NFIDTIRSYAA-G----------------------------FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIV 392 (514)
Q Consensus 343 -~~~~~l~~~~~-~----------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 392 (514)
++.+.++.... + .+++..+++..++++...++.+ ++..++.++++
T Consensus 205 ~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l-----~~~~~~~~~~~ 279 (390)
T 3b8x_A 205 EEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKL-----PRFISVRRKNA 279 (390)
T ss_dssp HHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 66665543221 1 1122336777777777766543 45788889999
Q ss_pred HHHHHHHHhC-CCccccC--CCc--EEEEEeCC--CccHHHHHHHHHHhCCeEEeccc---CCCC-CC------------
Q psy16848 393 AYLRNELIQI-GFPVEHT--PSH--IIPIKIGN--PALNTKICDMLLKEKGHYVQPIN---YPTV-PV------------ 449 (514)
Q Consensus 393 ~~l~~~L~~~-g~~~~~~--~~~--~~~i~l~~--~~~~~~~~~~Ll~~~GI~v~~~~---~~~~-~~------------ 449 (514)
+++.+.|+++ ++.+..+ ..+ .+.+.++. +.+..++.+.|. ++||.+++.. .|.. +.
T Consensus 280 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~-~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (390)
T 3b8x_A 280 EYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLN-SAGIECRPIVTGNFLKNTDVLKYFDYTVHNNV 358 (390)
T ss_dssp HHHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTSCCCHHHHHHHHH-HTTBCCBCSTTSSGGGCHHHHTTCEEEESSCC
T ss_pred HHHHHHhcCCCCcccCCCCCCcccEEEEEEecCcCcccHHHHHHHHH-HCCCCeeeecCCchhhcchhhhcCCCCCcCCC
Confidence 9999999887 6665432 233 35566653 345788999994 8999998632 1112 11
Q ss_pred ------CCcEEEEEeCCCCCHHHHHHHHHHH
Q psy16848 450 ------GEEKIRLAPTPFHTREMIDKFVTDL 474 (514)
Q Consensus 450 ------~~~~iRl~~~~~~t~e~id~~~~~l 474 (514)
..+.+|++++..+|++|++++++.|
T Consensus 359 ~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 359 DNAEYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp HHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred hHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 0147999999999999999999876
No 214
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.90 E-value=1.8e-22 Score=212.74 Aligned_cols=311 Identities=13% Similarity=0.136 Sum_probs=208.2
Q ss_pred cchHHHHHHHHHHhHcCCC----cEEEEeccccccccchhhcccc------------CCCceEEecCccchhhhhhhhcC
Q psy16848 58 NSLFHEKLEEDVAKLHQKE----AGLVFTSCYVANDSTLFTLGKM------------IPGLHYISDAGNHASMIQGIRNS 121 (514)
Q Consensus 58 ~~~~~~~~~~~la~~~~~~----~~i~~~sGt~a~~~~l~~l~~~------------~~gd~v~~~~~~h~~~~~~~~~~ 121 (514)
..++.+++.+++++++|.+ .++++++||+|+..++.++... .+++.|+++...|.++..+++..
T Consensus 133 ~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~ 212 (511)
T 3vp6_A 133 FVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAAL 212 (511)
T ss_dssp HHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHc
Confidence 3466677778888888876 4577888999998888776431 15789999999999999999988
Q ss_pred CC---CeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCce
Q psy16848 122 SA---PKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGI 198 (514)
Q Consensus 122 ~~---~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 198 (514)
|. +++.++.++ .|
T Consensus 213 g~g~~~~~~v~~d~---------------------------------------------------------------~~- 228 (511)
T 3vp6_A 213 GFGTDNVILIKCNE---------------------------------------------------------------RG- 228 (511)
T ss_dssp TSCGGGEEEECBCT---------------------------------------------------------------TS-
T ss_pred CCCCCcEEEeecCC---------------------------------------------------------------CC-
Confidence 87 666555420 00
Q ss_pred eeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhcc--CCCceEEEEecCCCCCcccc
Q psy16848 199 GERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD--VKIPKLVAFETVHSMTGAIC 276 (514)
Q Consensus 199 ~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~--~~~~~~vv~~~~~nptG~~~ 276 (514)
.-|.+.+++.+++.. ..++++|++++++|++|.+.
T Consensus 229 -------------------------------------------~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd 265 (511)
T 3vp6_A 229 -------------------------------------------KIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFD 265 (511)
T ss_dssp -------------------------------------------CBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBC
T ss_pred -------------------------------------------ccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccc
Confidence 003444444444321 22368899999999999999
Q ss_pred CHHHHHHHHHHcCCEEEEeccccccccCC-CCCCccccCCCccCceEEEcCCcccccC-CC-eEEEe-cHHHHHHHHhhc
Q psy16848 277 PLKELCEVSHQHGALTFVDEVHAVGLYGE-HGAGIGERDGQLHNMDIISGTLGKAFGN-IG-GYIVG-TKNFIDTIRSYA 352 (514)
Q Consensus 277 ~l~~l~~l~~~~gv~li~Dea~~~g~~g~-~~~~~~~~~~~~~~~di~~~S~sK~lg~-~G-G~l~~-~~~~~~~l~~~~ 352 (514)
|+++|.++|++||+++++|++|+.+.... ..+ ....+ ...+|++++++||+++. .| |+++. ++.++.......
T Consensus 266 ~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~--~~~~g-~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~ 342 (511)
T 3vp6_A 266 PIQEIADICEKYNLWLHVDAAWGGGLLMSRKHR--HKLNG-IERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMH 342 (511)
T ss_dssp CHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTG--GGGTT-GGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCC
T ss_pred cHHHHHHHHHHcCCEEEEEccchhhHhhChhhh--hhccC-CccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccC
Confidence 99999999999999999999999665421 111 01122 23679999999999864 34 66655 455565543222
Q ss_pred CceEec---------------cC-CcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcccc---CCCc
Q psy16848 353 AGFIFT---------------TS-LPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEH---TPSH 412 (514)
Q Consensus 353 ~~~~~~---------------~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~---~~~~ 412 (514)
..+.+. .. ........+..++..+..++++++.++..++.+++.+.|++. |+.+.. +..+
T Consensus 343 ~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~ 422 (511)
T 3vp6_A 343 ASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHT 422 (511)
T ss_dssp CTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSS
T ss_pred CccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeE
Confidence 211110 00 001223445555665556778889999999999999999987 887765 4455
Q ss_pred EEEEEeCCCc----------------cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEe-CCCCCHHHHHHHHHHHH
Q psy16848 413 IIPIKIGNPA----------------LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP-TPFHTREMIDKFVTDLL 475 (514)
Q Consensus 413 ~~~i~l~~~~----------------~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~-~~~~t~e~id~~~~~l~ 475 (514)
++.+++.... ...++.+.|+ ++|+.+..... ...+..++|+++ +..++.+|++++++.|+
T Consensus 423 ~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~-~~G~~~~~~~~--~~~~~~~lRi~~~~~~~t~~di~~ll~~i~ 499 (511)
T 3vp6_A 423 NVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMM-ESGTTMVGYQP--QGDKANFFRMVISNPAATQSDIDFLIEEIE 499 (511)
T ss_dssp CEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHH-HHTSCEEEEEE--ETTEEEEEEECCCCTTCCHHHHHHHHHHHH
T ss_pred EEEEEEeCccccccccchhHHHHHHHHHHHHHHHHH-hcCCEEEEEEE--eCCceEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 6666543211 1236888886 77765443111 122235799999 67889999999999999
Q ss_pred HHHHHc
Q psy16848 476 AVWKSL 481 (514)
Q Consensus 476 ~~l~~~ 481 (514)
++-+.+
T Consensus 500 ~~~~~~ 505 (511)
T 3vp6_A 500 RLGQDL 505 (511)
T ss_dssp HHHC--
T ss_pred HHHHhh
Confidence 876544
No 215
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.90 E-value=1.5e-22 Score=210.73 Aligned_cols=301 Identities=14% Similarity=0.048 Sum_probs=204.0
Q ss_pred chHHHHHHHHHHhHcCCCc-EEEEeccc-cccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHH
Q psy16848 59 SLFHEKLEEDVAKLHQKEA-GLVFTSCY-VANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHL 136 (514)
Q Consensus 59 ~~~~~~~~~~la~~~~~~~-~i~~~sGt-~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l 136 (514)
.+..+++++++++++|.+. ++++++|| .++..++.++....+++.|+++..+|.+...+++..|.+++.++...
T Consensus 132 ~~~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~---- 207 (456)
T 2z67_A 132 YALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVL---- 207 (456)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEE----
T ss_pred HHHHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEec----
Confidence 4567889999999999865 56666677 45665665543212678888888899999988888887776543200
Q ss_pred HHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhcc
Q psy16848 137 TQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLV 216 (514)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~ 216 (514)
.+.. +
T Consensus 208 ----------------~~~~----------------------------------------~------------------- 212 (456)
T 2z67_A 208 ----------------DGDR----------------------------------------V------------------- 212 (456)
T ss_dssp ----------------ETTE----------------------------------------E-------------------
T ss_pred ----------------cCCC----------------------------------------C-------------------
Confidence 0000 0
Q ss_pred CCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH-hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEe
Q psy16848 217 NPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL-ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD 295 (514)
Q Consensus 217 ~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l-~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~D 295 (514)
..|.+.+++.+ +.....++++|++++++|++|.+.|+++|.++|+++|+++++|
T Consensus 213 -------------------------~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD 267 (456)
T 2z67_A 213 -------------------------YVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIIN 267 (456)
T ss_dssp -------------------------ECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEE
T ss_pred -------------------------CcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEE
Confidence 11556666666 3211235778889999999999999999999999999999999
Q ss_pred ccccccccCCCCCCccccC--CCccCceEEEcCCcccc-cCCC-eEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHH
Q psy16848 296 EVHAVGLYGEHGAGIGERD--GQLHNMDIISGTLGKAF-GNIG-GYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAR 370 (514)
Q Consensus 296 ea~~~g~~g~~~~~~~~~~--~~~~~~di~~~S~sK~l-g~~G-G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~ 370 (514)
++|+....| ..+.. ....++|++++|+||++ ++.| |+++. ++++++.+.+...+. . ..++ ..++.
T Consensus 268 ~A~~~~~~g-----~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~~~~g~--~-~~~~--~~~~~ 337 (456)
T 2z67_A 268 GAYAIQNNY-----YLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGR--A-SATP--VVNTL 337 (456)
T ss_dssp CTTTTTCHH-----HHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSC--B-CSHH--HHHHH
T ss_pred CcchHHHHH-----hhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCcCCCCC--C-CCCH--HHHHH
Confidence 998733321 10110 00116899999999986 4445 99988 577888775433322 1 1222 33344
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC----CCccccCCCcEEEEEe--CCCccHHHHHHHHHHhCCe---EEe-
Q psy16848 371 EAIRILSSQEGVELRAKHQDIVAYLRNELIQI----GFPVEHTPSHIIPIKI--GNPALNTKICDMLLKEKGH---YVQ- 440 (514)
Q Consensus 371 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~i~l--~~~~~~~~~~~~Ll~~~GI---~v~- 440 (514)
+++..+..++++++.++..++++++.+.|++. |+.+..+. +++.+.+ ++. ..++.+.|. ++|| .+.
T Consensus 338 aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~-~~v~~~~~~~~~--~~~l~~~L~-~~gi~~~rv~~ 413 (456)
T 2z67_A 338 VSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE-SPIASCISVNSD--PVEIAAKLY-NLRVTGPRGIK 413 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC-CSSEEEEECSSC--HHHHHHHHH-HTTEESCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC-CeEEEEEecccH--HHHHHHHHH-HcCCCcceEEe
Confidence 44554445677888999999999999999887 77666666 6666665 332 467888885 7875 443
Q ss_pred -----cccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848 441 -----PINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW 478 (514)
Q Consensus 441 -----~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l 478 (514)
++..|.. ....++|++++..+|++|+++++++|++++
T Consensus 414 ~~g~f~G~~~~~-~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 414 KTDHFGNCYLGT-YTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp TTCHHHHTCSSC-CSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred ecCccccccccc-cCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 1222211 124689999999999999999999998753
No 216
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.90 E-value=1.6e-22 Score=206.43 Aligned_cols=255 Identities=15% Similarity=0.128 Sum_probs=181.5
Q ss_pred hHHHHHHHHHHhHcCCCcEEE---EeccccccccchhhccccCCCceEEecC-ccchhhhhhhhcCCCCeeeccCCChHH
Q psy16848 60 LFHEKLEEDVAKLHQKEAGLV---FTSCYVANDSTLFTLGKMIPGLHYISDA-GNHASMIQGIRNSSAPKIIYRHNDVNH 135 (514)
Q Consensus 60 ~~~~~~~~~la~~~~~~~~i~---~~sGt~a~~~~l~~l~~~~~gd~v~~~~-~~h~~~~~~~~~~~~~~~~~~~~d~~~ 135 (514)
...+++++.+++++|.+.+++ ++||++|+..++.++.+ |||+|+++. +.|......+...|..
T Consensus 59 ~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~--~GD~Vl~~~~~~y~~~~~~~~~~g~~----------- 125 (409)
T 3jzl_A 59 EGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILR--PDDELLYITGQPYDTLEEIVGIRKQG----------- 125 (409)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHCC--TTCEEEECSSSCCTTHHHHHTSSSSS-----------
T ss_pred hHHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhcC--CCCEEEEeCCCCcHhHHHHHhcccch-----------
Confidence 347889999999999999888 78999999999988876 999999998 8887776332111100
Q ss_pred HHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhc
Q psy16848 136 LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215 (514)
Q Consensus 136 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l 215 (514)
T Consensus 126 -------------------------------------------------------------------------------- 125 (409)
T 3jzl_A 126 -------------------------------------------------------------------------------- 125 (409)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCceeeecchHHHHhhCCCCEEEecC-----CChhHHHHHHhhccCCCceEEEEec----CCCCCccccCHHHHHHHHH
Q psy16848 216 VNPEVAIHASMIQGIRNSSAPKIIYRH-----NDVNHLTQVLENMDVKIPKLVAFET----VHSMTGAICPLKELCEVSH 286 (514)
Q Consensus 216 ~~~~v~~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~l~~~~~~~~~~vv~~~----~~nptG~~~~l~~l~~l~~ 286 (514)
...+...|++++.++. .|++.+++.+ ++++++|++++ ++||+|.+.++++|.++|+
T Consensus 126 -----------~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai----~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~ 190 (409)
T 3jzl_A 126 -----------QGSLKDFHIGYSSVPLLENGDVDFPRIAKKM----TPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVK 190 (409)
T ss_dssp -----------SSCTGGGTCEEEECCCCTTSCCCHHHHHHHC----CTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHH
T ss_pred -----------hhHHHHcCCEEEEeCCCCCCCcCHHHHHHhc----cCCCeEEEEECCCCCCCCCcCccccHHHHHHHHH
Confidence 0011123444555542 2445554444 45689999999 9999999999999999999
Q ss_pred H--cCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEecHHHHHHHHhhcCc--eEec
Q psy16848 287 Q--HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVGTKNFIDTIRSYAAG--FIFT 358 (514)
Q Consensus 287 ~--~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~~~~~~~~l~~~~~~--~~~~ 358 (514)
+ +|+++++|++|+.+..+. .....++|++++|+||++|+. ||++++++++++.+...... ....
T Consensus 191 ~~~~~~~livD~a~~~~~~~~--------~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~ 262 (409)
T 3jzl_A 191 NINPEVIVFVDNCYGEFVEYQ--------EPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGRE 262 (409)
T ss_dssp HHCTTCEEEEECTTCTTTSSC--------CSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTGGG
T ss_pred hhCCCCEEEEeCCcccccccC--------CccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhcccccccc
Confidence 9 999999999998554211 111346899999999999753 59999999999988764322 2112
Q ss_pred cCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCc-----EEEEEeCCCccHHHHHHHHHH
Q psy16848 359 TSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSH-----IIPIKIGNPALNTKICDMLLK 433 (514)
Q Consensus 359 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-----~~~i~l~~~~~~~~~~~~Ll~ 433 (514)
.+.+.....++...++. .+.++++..+++.++.+.|+++|+.+.+..++ ++.+.+++.....++++.|.
T Consensus 263 ~g~~~~~~~~~l~gl~~-----~~~r~~~~~~~a~~la~~L~~~g~~v~p~~~~~~~~~i~~i~l~~~~~~~~~~~~L~- 336 (409)
T 3jzl_A 263 AGASLYSLLEMYQGFFL-----APHVTAQAIKGARFTAAMLAEFGVEADPVWDAPRTDLIQSVSFHNKEKMVAFAQAIQ- 336 (409)
T ss_dssp CCCCTTCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSCCEEECSCHHHHHHHHHHHH-
T ss_pred ccccHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCccEEEEEEeCCHHHHHHHHHHHH-
Confidence 22222112334444432 23577888899999999999998877544444 78888887777788999995
Q ss_pred hCC
Q psy16848 434 EKG 436 (514)
Q Consensus 434 ~~G 436 (514)
+..
T Consensus 337 ~~~ 339 (409)
T 3jzl_A 337 AAS 339 (409)
T ss_dssp HTS
T ss_pred hcC
Confidence 554
No 217
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.90 E-value=2.9e-22 Score=205.20 Aligned_cols=256 Identities=17% Similarity=0.172 Sum_probs=181.1
Q ss_pred HHHHHHHHHHhHcCCCcEEE---EeccccccccchhhccccCCCceEEecC-ccchhhhhhhhcCCCCeeeccCCChHHH
Q psy16848 61 FHEKLEEDVAKLHQKEAGLV---FTSCYVANDSTLFTLGKMIPGLHYISDA-GNHASMIQGIRNSSAPKIIYRHNDVNHL 136 (514)
Q Consensus 61 ~~~~~~~~la~~~~~~~~i~---~~sGt~a~~~~l~~l~~~~~gd~v~~~~-~~h~~~~~~~~~~~~~~~~~~~~d~~~l 136 (514)
..+++++++++++|.+.+++ ++||++|+..++.++++ |||+|+++. +.|......+...+.. +.
T Consensus 75 g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all~--pGD~Vl~~~~~~y~~~~~~~g~~~~~---~~------- 142 (427)
T 3hvy_A 75 GRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNLR--PNDTMMSICGMPYDTLHDIIGMDDSK---KV------- 142 (427)
T ss_dssp HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTCC--TTCEEEECSSSCCGGGHHHHTCCTTC---CS-------
T ss_pred hHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhcC--CCCEEEEeCCCCchhHHHHhccccch---hh-------
Confidence 47899999999999999988 79999999999998876 999999998 7777654221000000 00
Q ss_pred HHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhcc
Q psy16848 137 TQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLV 216 (514)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~ 216 (514)
T Consensus 143 -------------------------------------------------------------------------------- 142 (427)
T 3hvy_A 143 -------------------------------------------------------------------------------- 142 (427)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeeecchHHHHhhCCCCEEEecC----CChhHHHHHHhhccCCCceEEEEec----CCCCCccccCHHHHHHHHHH-
Q psy16848 217 NPEVAIHASMIQGIRNSSAPKIIYRH----NDVNHLTQVLENMDVKIPKLVAFET----VHSMTGAICPLKELCEVSHQ- 287 (514)
Q Consensus 217 ~~~v~~~~~~~~~~~~~g~~~~~v~~----~d~~~l~~~l~~~~~~~~~~vv~~~----~~nptG~~~~l~~l~~l~~~- 287 (514)
..+...|++++.++. .|++.+++.+++ .+++++|++++ ++||+|.+.++++|.++|++
T Consensus 143 -----------~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~--~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~ 209 (427)
T 3hvy_A 143 -----------GSLREYGVKYKMVDLKDGKVDINTVKEELKK--DDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREV 209 (427)
T ss_dssp -----------CCTGGGTCEEEECCCBTTBCCHHHHHHHHHH--CTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHH
T ss_pred -----------hHHHHcCCEEEEecCCCCCcCHHHHHHHhhC--CCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHh
Confidence 001112334444443 366667776653 14589999999 99999999999999999999
Q ss_pred -cCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC----CCeEEEecHHHHHHHHhhc--CceEeccC
Q psy16848 288 -HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN----IGGYIVGTKNFIDTIRSYA--AGFIFTTS 360 (514)
Q Consensus 288 -~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~----~GG~l~~~~~~~~~l~~~~--~~~~~~~~ 360 (514)
+|+++++|++|+.+.... .....++|++++|+||++++ .||++++++++++.++... ...+...+
T Consensus 210 ~~g~~livD~a~~~~~~~~--------~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g~~~~ 281 (427)
T 3hvy_A 210 NENVIVFVDNCYGEFVEEK--------EPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECG 281 (427)
T ss_dssp CSSSEEEEECTTCTTTSSS--------CGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCC
T ss_pred CCCCEEEEECCccccccCC--------CCcccCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCcccccC
Confidence 899999999998554211 11133689999999999986 4599999999999987743 22211222
Q ss_pred CcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCc-----EEEEEeCCCccHHHHHHHHHHhC
Q psy16848 361 LPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSH-----IIPIKIGNPALNTKICDMLLKEK 435 (514)
Q Consensus 361 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-----~~~i~l~~~~~~~~~~~~Ll~~~ 435 (514)
.+...+..+...+.. .+.++++..+++.++.+.|+++|+.+.+..++ ++.+.+++.....++++.|. ..
T Consensus 282 ~~~~~a~~~~~gl~~-----~~~r~~~~~~~a~~la~~L~~~g~~V~p~~~~~~~~li~~~~l~~~~~~~~f~~~l~-~~ 355 (427)
T 3hvy_A 282 STFGVMRSLYEGLFM-----APHVTIEAVKGAVFCARIMELAGFDVLPKYNDKRTDIIQAIKFNDEKKLIDFIKGIQ-TA 355 (427)
T ss_dssp CCTTCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSEEEEECSSHHHHHHHHHHHH-HT
T ss_pred CCHHHHHHHHHhHhH-----HHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCCceEEEEEeCCCHHHHHHHHHHhc-cc
Confidence 222223333444432 23477888899999999999998877554444 88899887666778888884 44
No 218
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.89 E-value=2.9e-22 Score=205.19 Aligned_cols=256 Identities=16% Similarity=0.165 Sum_probs=181.4
Q ss_pred HHHHHHHHHHhHcCCCcEEE---EeccccccccchhhccccCCCceEEecC-ccchhhhhhhhcCCCCeeeccCCChHHH
Q psy16848 61 FHEKLEEDVAKLHQKEAGLV---FTSCYVANDSTLFTLGKMIPGLHYISDA-GNHASMIQGIRNSSAPKIIYRHNDVNHL 136 (514)
Q Consensus 61 ~~~~~~~~la~~~~~~~~i~---~~sGt~a~~~~l~~l~~~~~gd~v~~~~-~~h~~~~~~~~~~~~~~~~~~~~d~~~l 136 (514)
..+++++++++++|.+.+++ ++||++|+..++.++.+ |||+|+++. +.|......+ |.+.... .
T Consensus 74 ~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~--pGD~Vl~~~~~~y~~~~~~~---g~~~~~~-~------ 141 (427)
T 3i16_A 74 GRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNLR--PGNTMLSVCGEPYDTLHDVI---GITENSN-M------ 141 (427)
T ss_dssp HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHCC--TTCEEEESSSSCCGGGHHHH---TCSCCCS-S------
T ss_pred HHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHhC--CCCEEEEeCCCccHHHHHHH---hccccch-H------
Confidence 47899999999999999888 89999999999988876 999999998 8887765322 1000000 0
Q ss_pred HHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhcc
Q psy16848 137 TQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLV 216 (514)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~ 216 (514)
T Consensus 142 -------------------------------------------------------------------------------- 141 (427)
T 3i16_A 142 -------------------------------------------------------------------------------- 141 (427)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeeecchHHHHhhCCCCEEEecC-----CChhHHHHHHhhccCCCceEEEEec----CCCCCccccCHHHHHHHHHH
Q psy16848 217 NPEVAIHASMIQGIRNSSAPKIIYRH-----NDVNHLTQVLENMDVKIPKLVAFET----VHSMTGAICPLKELCEVSHQ 287 (514)
Q Consensus 217 ~~~v~~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~l~~~~~~~~~~vv~~~----~~nptG~~~~l~~l~~l~~~ 287 (514)
..+...|.+++.++. .|++.+++.+++ .+++++|++++ |+||+|.+.++++|.++|++
T Consensus 142 -----------~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~--~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~ 208 (427)
T 3i16_A 142 -----------GSLKEFGINYKQVDLKEDGKPNLEEIEKVLKE--DESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKN 208 (427)
T ss_dssp -----------CCTGGGTCEEEECCCCTTSSCCHHHHHHHHHT--CTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHH
T ss_pred -----------HHHHHcCCEEEEecCccCCCcCHHHHHHHhhC--CCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHH
Confidence 000112334444442 366667776653 14689999999 99999999999999999999
Q ss_pred --cCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC----CCeEEEecHHHHHHHHhhcCceEeccCC
Q psy16848 288 --HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN----IGGYIVGTKNFIDTIRSYAAGFIFTTSL 361 (514)
Q Consensus 288 --~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~----~GG~l~~~~~~~~~l~~~~~~~~~~~~~ 361 (514)
+|+++++|++|+.+.... .....++|++++|+||.+|+ .||++++++++++.++........+...
T Consensus 209 ~~~g~~livD~a~~~~~~~~--------~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~~~ 280 (427)
T 3i16_A 209 IRKDIICFVDNCYGEFMDTK--------EPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGEC 280 (427)
T ss_dssp HCTTSEEEEECTTTTTSSSS--------CGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGC
T ss_pred hCCCCEEEEECCCccccccC--------CccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCccCccC
Confidence 999999999998554211 11133689999999999986 3599999999999988732211112111
Q ss_pred cH-HH-HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCc-----EEEEEeCCCccHHHHHHHHHHh
Q psy16848 362 PP-TV-LAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSH-----IIPIKIGNPALNTKICDMLLKE 434 (514)
Q Consensus 362 ~~-~~-~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-----~~~i~l~~~~~~~~~~~~Ll~~ 434 (514)
.+ .. ...+...++. ...++++..+++.++.+.|+++++.+.++.++ ++.+.+++.....++++.|. .
T Consensus 281 ~~~~~~a~~~l~gl~~-----~~~r~~~~~~~a~~la~~L~~~g~~V~p~~~~~~~~~i~~i~l~~~~~~~~f~~~l~-~ 354 (427)
T 3i16_A 281 GSTFGVVRSMYQGLFL-----APHISMEALKGAILCSRIMELAGFEVMPKYDEKRSDIIQSIKFNDKDKLIEFCKGIQ-T 354 (427)
T ss_dssp CCCTTCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSCEEEECSSHHHHHHHHHHHH-H
T ss_pred CccHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCCccEEEEEEECCHHHHHHHHHHHh-h
Confidence 11 22 2333333332 23578888999999999999998877555555 88899987667788999985 5
Q ss_pred C
Q psy16848 435 K 435 (514)
Q Consensus 435 ~ 435 (514)
.
T Consensus 355 ~ 355 (427)
T 3i16_A 355 G 355 (427)
T ss_dssp T
T ss_pred c
Confidence 5
No 219
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.89 E-value=1.5e-21 Score=203.92 Aligned_cols=305 Identities=11% Similarity=0.058 Sum_probs=206.6
Q ss_pred chHHHHHHHHHHhHcCCC-----------cEEEEeccccccccchhhcccc-----------------CCCceEEecCcc
Q psy16848 59 SLFHEKLEEDVAKLHQKE-----------AGLVFTSCYVANDSTLFTLGKM-----------------IPGLHYISDAGN 110 (514)
Q Consensus 59 ~~~~~~~~~~la~~~~~~-----------~~i~~~sGt~a~~~~l~~l~~~-----------------~~gd~v~~~~~~ 110 (514)
.++.+++.+++++++|.+ .++++++||++|+.++.+.... .++++|+++..+
T Consensus 112 ~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~ 191 (475)
T 3k40_A 112 TELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQA 191 (475)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTS
T ss_pred HHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCc
Confidence 456666777788888876 3688899999999888776320 145789999999
Q ss_pred chhhhhhhhcCCCCeeeccCC----ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccc
Q psy16848 111 HASMIQGIRNSSAPKIIYRHN----DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH 186 (514)
Q Consensus 111 h~~~~~~~~~~~~~~~~~~~~----d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (514)
|.++..+++..|.+++.++.+ |+++|++.|.+...
T Consensus 192 H~s~~~~~~~~g~~~~~v~~d~~~~d~~~L~~~i~~~~~----------------------------------------- 230 (475)
T 3k40_A 192 HSSVERAGLLGGVKLRSVQSENHRMRGAALEKAIEQDVA----------------------------------------- 230 (475)
T ss_dssp CHHHHHHHHHHTCEEEEECCBTTBCCHHHHHHHHHHHHH-----------------------------------------
T ss_pred hHHHHHHHHHcCCceEEEECCCCCcCHHHHHHHHHHHHH-----------------------------------------
Confidence 999999999888888777652 45555554433210
Q ss_pred cccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEe
Q psy16848 187 AVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFE 266 (514)
Q Consensus 187 ~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~ 266 (514)
....+.+++++
T Consensus 231 ---------------------------------------------------------------------~~~~~~~v~~~ 241 (475)
T 3k40_A 231 ---------------------------------------------------------------------EGLIPFYAVVT 241 (475)
T ss_dssp ---------------------------------------------------------------------TTCEEEEEEEE
T ss_pred ---------------------------------------------------------------------CCCccEEEEEE
Confidence 01125678889
Q ss_pred cCCCCCccccCHHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEcCCcccccC-CC-eEEEec-H
Q psy16848 267 TVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISGTLGKAFGN-IG-GYIVGT-K 342 (514)
Q Consensus 267 ~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~G-G~l~~~-~ 342 (514)
.++|++|.+.|+++|.++|++||+++++|++|+.+.. ....... ..+ ...+|.+++|+||+++. .| |+++.+ +
T Consensus 242 ~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~--~~g-i~~~Ds~~~~~hK~l~~p~g~g~l~~~~~ 318 (475)
T 3k40_A 242 LGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHL--MKG-IESADSFNFNPHKWMLVNFDCSAMWLKDP 318 (475)
T ss_dssp BSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGG--GTT-GGGCSEEEECHHHHSSCCSSCEEEEESSG
T ss_pred ecCCCCcCcCCHHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHH--hcC-cccCCEEEECchhccCCCCceEEEEEeCH
Confidence 9999999999999999999999999999999986533 2111111 112 12579999999998864 34 666554 4
Q ss_pred HHH-HHHHhhcCce------------EeccCCc-HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc
Q psy16848 343 NFI-DTIRSYAAGF------------IFTTSLP-PTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE 407 (514)
Q Consensus 343 ~~~-~~l~~~~~~~------------~~~~~~~-~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 407 (514)
..+ +.+....... .++...+ +.......+++..+..++++++.++..++++++.+.|++. ++++.
T Consensus 319 ~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~ 398 (475)
T 3k40_A 319 SWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELA 398 (475)
T ss_dssp GGC---------------------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEES
T ss_pred HHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 443 2221110000 0000011 1223444555665556678889999999999999999998 88776
Q ss_pred cC-CCcEEEEEeCC-CccHHHHHHHHHHhCCe-EEecccCCCCCCCCcEEEEEeCC-CCCHHHHHHHHHHHHHHHHHc
Q psy16848 408 HT-PSHIIPIKIGN-PALNTKICDMLLKEKGH-YVQPINYPTVPVGEEKIRLAPTP-FHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 408 ~~-~~~~~~i~l~~-~~~~~~~~~~Ll~~~GI-~v~~~~~~~~~~~~~~iRl~~~~-~~t~e~id~~~~~l~~~l~~~ 481 (514)
.+ ..+++.+.++. .....++.++|. ++|+ .+.+... .+..++|++++. .+|++|+++++++|+++.+++
T Consensus 399 ~~~~~~iv~f~~~~~~~~~~~l~~~L~-~~g~~~~~~~~~----~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~ 471 (475)
T 3k40_A 399 AEINMGLVCFRLKGSNERNEALLKRIN-GRGHIHLVPAKI----KDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEM 471 (475)
T ss_dssp SCCBTTEEEEEESSCHHHHHHHHHHHH-HHTSCBCEEEEE----TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEEEeCCchHHHHHHHHHHH-hCCcEEEEeeEE----CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 44 45677887753 334678889996 5554 4444332 346799999864 458999999999999988765
No 220
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.89 E-value=7.3e-22 Score=214.27 Aligned_cols=310 Identities=15% Similarity=0.104 Sum_probs=210.3
Q ss_pred chHHHHHHHHHHhHcCCCcEEEEeccc-cccccchhhccccCCCceEEecCccchhhhhh-hhcCCCCeeeccCCChHHH
Q psy16848 59 SLFHEKLEEDVAKLHQKEAGLVFTSCY-VANDSTLFTLGKMIPGLHYISDAGNHASMIQG-IRNSSAPKIIYRHNDVNHL 136 (514)
Q Consensus 59 ~~~~~~~~~~la~~~~~~~~i~~~sGt-~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~-~~~~~~~~~~~~~~d~~~l 136 (514)
.....++++.+++++|.+++++++||+ +++.+++.++.. +||.|+++.+.|.++..+ ++..|++++.++... +
T Consensus 172 ~~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~~--pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~-~-- 246 (730)
T 1c4k_A 172 EGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVS--NGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNR-N-- 246 (730)
T ss_dssp BTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCC--TTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEE-C--
T ss_pred hHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhcC--CCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCc-c--
Confidence 457899999999999999998888887 679999988876 999999999999999998 899999887654310 0
Q ss_pred HHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhcc
Q psy16848 137 TQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLV 216 (514)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~ 216 (514)
.|... |
T Consensus 247 -------------------~~~i~------------------------------------g------------------- 252 (730)
T 1c4k_A 247 -------------------PYGFI------------------------------------G------------------- 252 (730)
T ss_dssp -------------------TTCCE------------------------------------E-------------------
T ss_pred -------------------ccCcc------------------------------------C-------------------
Confidence 00000 0
Q ss_pred CCceeeecchHHHHhhCCCCEEEecCCChhHH-----HHHHhhcc-----CCCc-eEEEEecCCCCCccccCHHHHHHHH
Q psy16848 217 NPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL-----TQVLENMD-----VKIP-KLVAFETVHSMTGAICPLKELCEVS 285 (514)
Q Consensus 217 ~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l-----~~~l~~~~-----~~~~-~~vv~~~~~nptG~~~~l~~l~~l~ 285 (514)
.-|.+.+ ++.+++.. +.++ ++++++++ |++|.+.++++|.++|
T Consensus 253 -------------------------~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la 306 (730)
T 1c4k_A 253 -------------------------GIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRI 306 (730)
T ss_dssp -------------------------EECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHH
T ss_pred -------------------------CCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHH
Confidence 0033333 44444320 1112 78888887 6899999999999999
Q ss_pred HHcCCEEEEeccccccc-cCCCCCCccccCCCccCce----EEEcCCcccccCC--CeEEEecHHHH---------HHHH
Q psy16848 286 HQHGALTFVDEVHAVGL-YGEHGAGIGERDGQLHNMD----IISGTLGKAFGNI--GGYIVGTKNFI---------DTIR 349 (514)
Q Consensus 286 ~~~gv~li~Dea~~~g~-~g~~~~~~~~~~~~~~~~d----i~~~S~sK~lg~~--GG~l~~~~~~~---------~~l~ 349 (514)
+++|+++++|++|+.+. ++...++.........+.| ++++|+||++++. ||+++.+++.+ ..+.
T Consensus 307 ~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~~~~i~~~~~~ 386 (730)
T 1c4k_A 307 GHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFN 386 (730)
T ss_dssp GGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHH
T ss_pred HHcCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcCcccccCHHHHH
Confidence 99999999999997432 2221110001110011344 9999999999753 36775443321 1222
Q ss_pred hhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh-C-CCccccCC-----------------
Q psy16848 350 SYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ-I-GFPVEHTP----------------- 410 (514)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~----------------- 410 (514)
... ....+++.+...+++..++++.+..+...+..++..++.+++++.|++ . |+.+..+.
T Consensus 387 ~~~-~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~ 465 (730)
T 1c4k_A 387 NSF-NLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMAN 465 (730)
T ss_dssp HHH-HHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTT
T ss_pred HHH-HHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccc
Confidence 111 111134567777777777887765434567788899999999999988 3 66553321
Q ss_pred --------------------Cc---E----EEEEeCC-----------CccHHHHHHHHHHhCCeEEecccCCCCCCCCc
Q psy16848 411 --------------------SH---I----IPIKIGN-----------PALNTKICDMLLKEKGHYVQPINYPTVPVGEE 452 (514)
Q Consensus 411 --------------------~~---~----~~i~l~~-----------~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~ 452 (514)
.. + +.+..+. +....++.+.|. ++||.+... +..
T Consensus 466 ~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~-e~GI~v~~~-------~~~ 537 (730)
T 1c4k_A 466 NIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLR-DHGIIPEKS-------DLN 537 (730)
T ss_dssp CGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHH-HTTCCCSEE-------CSS
T ss_pred cchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHH-HCCcEEEEC-------CCC
Confidence 11 1 3455431 235678888895 789988532 346
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848 453 KIRLAPTPFHTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 453 ~iRl~~~~~~t~e~id~~~~~l~~~l~~~~ 482 (514)
.+|++++..+|++++++++++|+++.+.+.
T Consensus 538 ~ir~~~s~g~t~e~i~~Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 538 SILFLMTPAETPAKMNNLITQLLQLQRLIE 567 (730)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 899999999999999999999999987663
No 221
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.89 E-value=1.3e-22 Score=210.45 Aligned_cols=291 Identities=16% Similarity=0.148 Sum_probs=199.1
Q ss_pred chHHHHHHHHHHhHcCCCcEEEEecc-ccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccC--CChHH
Q psy16848 59 SLFHEKLEEDVAKLHQKEAGLVFTSC-YVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRH--NDVNH 135 (514)
Q Consensus 59 ~~~~~~~~~~la~~~~~~~~i~~~sG-t~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~--~d~~~ 135 (514)
.....++++++++ +|.++.+++++| |+++..++.++.. +||.|+++.+.|.++..++...|++++.++. ++.
T Consensus 56 ~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~~--~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~-- 130 (446)
T 2x3l_A 56 EEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFSQ--KKGDILMARNVHKSVLHALDISQQEGHFIETHQSPL-- 130 (446)
T ss_dssp SSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTTT--SSSCEEECTTCCHHHHHHHHHHTCCEEECEEEECTT--
T ss_pred chHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhcC--CCCEEEEecCccHHHHHHHHHcCCeEEEEeCeeccc--
Confidence 4567899999999 998776666665 5789999988866 9999999999999999999888888776543 100
Q ss_pred HHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhc
Q psy16848 136 LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215 (514)
Q Consensus 136 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l 215 (514)
+|..
T Consensus 131 ----------------------------------------~~~~------------------------------------ 134 (446)
T 2x3l_A 131 ----------------------------------------TNHY------------------------------------ 134 (446)
T ss_dssp ----------------------------------------TSSE------------------------------------
T ss_pred ----------------------------------------cCcC------------------------------------
Confidence 0000
Q ss_pred cCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEe
Q psy16848 216 VNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD 295 (514)
Q Consensus 216 ~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~D 295 (514)
-.+ |.+.+ ..++++++++++ .|++|.+.|+++|.++|++||+++|+|
T Consensus 135 ----------------------~~~---d~~~l-------~~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livD 181 (446)
T 2x3l_A 135 ----------------------NKV---NLSRL-------NNDGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLID 181 (446)
T ss_dssp ----------------------EEE---EC--------------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEE
T ss_pred ----------------------CCC---CHHHH-------cCCCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEc
Confidence 000 11111 124578999998 677999999999999999999999999
Q ss_pred ccccccccCCCCCCccccCCCccCceEEEcCCccccc-CCC-eEEEecHHHHH--HHHhhcCceEeccCCcHHHHHHHHH
Q psy16848 296 EVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG-NIG-GYIVGTKNFID--TIRSYAAGFIFTTSLPPTVLAGARE 371 (514)
Q Consensus 296 ea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg-~~G-G~l~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~a~~~ 371 (514)
|+|+. ...-.+. +......++|++++|+||+++ +.| |++++++++++ .+......+ .+++.+...++++.+
T Consensus 182 ea~~~-~~~f~~~---~~~~~~~g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~~~~~~-~~~s~~~~~~aal~~ 256 (446)
T 2x3l_A 182 EAHGA-HFGLQGF---PDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSYF-QTSSPSYLIMASLES 256 (446)
T ss_dssp CTTCT-TTTSTTS---CCCGGGGTCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHHHHHHH-SCSSCCHHHHHHHHH
T ss_pred chhhh-hhccCCC---CCChHHcCCCEEEECCccccccccccEEEEEcCCcCCHHHHHHHHHHH-cCCCchHHHHHHHHH
Confidence 99984 2211111 111112357999999999664 445 99988877654 332211111 123455666666666
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCC-CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCC
Q psy16848 372 AIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTP-SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVG 450 (514)
Q Consensus 372 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~ 450 (514)
+++.+...+.+++.++.+++.+++++. ++.+..+. ...+++.++ +.+..++.+.|. ++||.+... +
T Consensus 257 a~~~l~~~g~~~~~~~~~~l~~~l~~~----g~~~~~~~~~~~l~i~~~-~~~~~~l~~~L~-~~GI~v~~~-------g 323 (446)
T 2x3l_A 257 AAQFYKTYDSTLFFAKRAQLIECLENK----GFEMLQVDDPLKLLIKYE-GFTGHDIQNWFM-NAHIYLELA-------D 323 (446)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHH----TCEEEECSSTTEEEEECT-TSCHHHHHHHHH-HTTEEESEE-------C
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHc----CCEECcCCCCeEEEEEeC-CcCHHHHHHHHH-HCCCEEEec-------C
Confidence 676665443334666777777777666 67665543 336677776 345778999996 779998611 2
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848 451 EEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 451 ~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~ 482 (514)
.+++|++++..+|++++ +++++|+++++.+.
T Consensus 324 ~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~~ 354 (446)
T 2x3l_A 324 DYQALAILPLWHHDDTY-LFDSLLRKIEDMIL 354 (446)
T ss_dssp SSCEEEECCCCCTTCCC-CHHHHHHHHHTCCC
T ss_pred CCEEEEEeecCCCHHHH-HHHHHHHHHHHhhc
Confidence 35799999988899999 99999999987664
No 222
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.88 E-value=1e-20 Score=199.49 Aligned_cols=306 Identities=14% Similarity=0.147 Sum_probs=204.0
Q ss_pred chHHHHHHHHHHhHcCCC----cEEEEeccccccccchhhccc------cCCC-----c-eEEecCccchhhhhhhhcCC
Q psy16848 59 SLFHEKLEEDVAKLHQKE----AGLVFTSCYVANDSTLFTLGK------MIPG-----L-HYISDAGNHASMIQGIRNSS 122 (514)
Q Consensus 59 ~~~~~~~~~~la~~~~~~----~~i~~~sGt~a~~~~l~~l~~------~~~g-----d-~v~~~~~~h~~~~~~~~~~~ 122 (514)
.++..++.+++++++|.+ .++++++||+|+..++.++.. ..+| + .|+++...|.++..+++..|
T Consensus 131 ~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g 210 (504)
T 2okj_A 131 VLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALG 210 (504)
T ss_dssp HHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHcC
Confidence 445667778889999865 467778899999988877642 0145 6 79999999999998888776
Q ss_pred C---CeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCcee
Q psy16848 123 A---PKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIG 199 (514)
Q Consensus 123 ~---~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 199 (514)
. +++.++.++ .+
T Consensus 211 ~g~~~v~~v~~~~---------------------------------------------------------------~~-- 225 (504)
T 2okj_A 211 FGTDNVILIKCNE---------------------------------------------------------------RG-- 225 (504)
T ss_dssp SCGGGEEEECBCT---------------------------------------------------------------TS--
T ss_pred CCcccEEEEecCC---------------------------------------------------------------CC--
Confidence 5 454443320 00
Q ss_pred eecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhcc--CCCceEEEEecCCCCCccccC
Q psy16848 200 ERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD--VKIPKLVAFETVHSMTGAICP 277 (514)
Q Consensus 200 ~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~--~~~~~~vv~~~~~nptG~~~~ 277 (514)
.-|.+.+++.+++.. ..++++|++++++|++|.+.|
T Consensus 226 ------------------------------------------~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~ 263 (504)
T 2okj_A 226 ------------------------------------------KIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP 263 (504)
T ss_dssp ------------------------------------------CBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC
T ss_pred ------------------------------------------CCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC
Confidence 014455555554321 224789999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEeccccccccC-CCCCCccccCCCccCceEEEcCCccccc-CCC-eEEEecH-HHHHHHHhhcC
Q psy16848 278 LKELCEVSHQHGALTFVDEVHAVGLYG-EHGAGIGERDGQLHNMDIISGTLGKAFG-NIG-GYIVGTK-NFIDTIRSYAA 353 (514)
Q Consensus 278 l~~l~~l~~~~gv~li~Dea~~~g~~g-~~~~~~~~~~~~~~~~di~~~S~sK~lg-~~G-G~l~~~~-~~~~~l~~~~~ 353 (514)
+++|.++|++||+++++|++|+.+... .... ....++ ..+|+++.|+||+++ +.| |+++.++ ++++.......
T Consensus 264 l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~--~~~~g~-~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~ 340 (504)
T 2okj_A 264 IQEIADICEKYNLWLHVDAAWGGGLLMSRKHR--HKLNGI-ERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCA 340 (504)
T ss_dssp HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTG--GGGTTG-GGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCC
T ss_pred HHHHHHHHHHcCCEEEEehhhhhHHHhCHhhH--hhcCCc-ccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCC
Confidence 999999999999999999999965542 1110 112221 368999999999997 434 8888765 56654322222
Q ss_pred ceEecc-------------------CCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcccc---CC
Q psy16848 354 GFIFTT-------------------SLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEH---TP 410 (514)
Q Consensus 354 ~~~~~~-------------------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~---~~ 410 (514)
.+.++. ......+.++..++ ..++++++.++..++++++.+.|++. ++++.. +.
T Consensus 341 ~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~l---g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~ 417 (504)
T 2okj_A 341 GYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAK---GTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPE 417 (504)
T ss_dssp SSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCS
T ss_pred ccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence 111100 11234444443433 34567788999999999999999987 777764 44
Q ss_pred CcEEEEEe-CCC---------------ccHHHHHHHHHHhCCe-EEecccCCCCCCCCcEEEEEeC-CCCCHHHHHHHHH
Q psy16848 411 SHIIPIKI-GNP---------------ALNTKICDMLLKEKGH-YVQPINYPTVPVGEEKIRLAPT-PFHTREMIDKFVT 472 (514)
Q Consensus 411 ~~~~~i~l-~~~---------------~~~~~~~~~Ll~~~GI-~v~~~~~~~~~~~~~~iRl~~~-~~~t~e~id~~~~ 472 (514)
.+++.+.. +.. ....++.+.|. ++|+ .+.+... .....++|++++ ..+|++|++++++
T Consensus 418 ~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~G~~~~~~~~~---~~~~~~lRis~~~~~~t~edi~~~~~ 493 (504)
T 2okj_A 418 HTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMM-ESGTTMVGYQPQ---GDKANFFRMVISNPAATQSDIDFLIE 493 (504)
T ss_dssp SSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHH-HHTSCEEEEEEE---TTEEEEEEECCCCTTCCHHHHHHHHH
T ss_pred eEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHH-hCCcEEEEeeEE---CCceEEEEEEeCCCCCCHHHHHHHHH
Confidence 55666654 321 01356788886 7785 4443222 111358999996 7889999999999
Q ss_pred HHHHHHHHc
Q psy16848 473 DLLAVWKSL 481 (514)
Q Consensus 473 ~l~~~l~~~ 481 (514)
+|+++++++
T Consensus 494 ~l~~~~~~~ 502 (504)
T 2okj_A 494 EIERLGQDL 502 (504)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHHHHH
Confidence 999887653
No 223
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.88 E-value=9.4e-22 Score=203.67 Aligned_cols=205 Identities=19% Similarity=0.202 Sum_probs=140.7
Q ss_pred CCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecc-ccccccCCCCCCccccCCCccCceEEEcCCcc-----c
Q psy16848 257 VKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV-HAVGLYGEHGAGIGERDGQLHNMDIISGTLGK-----A 330 (514)
Q Consensus 257 ~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea-~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK-----~ 330 (514)
++++++|+++++ |++|.+.|+++|.++|+++|+++|+|.. +++|... . .+ ..++|++++|.+| +
T Consensus 194 ~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~-----~---~~-~~g~D~~~~s~kk~~~~~~ 263 (438)
T 1wyu_A 194 GEEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLK-----P---PG-AYGADIAVGDGQSLGLPMG 263 (438)
T ss_dssp CTTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBC-----C---HH-HHTCSEEEEECTTTTCCCG
T ss_pred CCCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcC-----C---Cc-cCCCCEEEECCcccCCCcc
Confidence 456899999999 9999999999999999999999997743 4444321 1 11 2367999988444 3
Q ss_pred ccCCC-eEEEecHHHHHHHHhhcC----------ceEe--------------ccCC---cHHHHHHHHHHHHHhhhchHH
Q psy16848 331 FGNIG-GYIVGTKNFIDTIRSYAA----------GFIF--------------TTSL---PPTVLAGAREAIRILSSQEGV 382 (514)
Q Consensus 331 lg~~G-G~l~~~~~~~~~l~~~~~----------~~~~--------------~~~~---~~~~~~a~~~~l~~~~~~~~~ 382 (514)
++++| |++++++++++.+..... .+.+ +.+. +.....++...+..+..++++
T Consensus 264 ~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~ 343 (438)
T 1wyu_A 264 FGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLR 343 (438)
T ss_dssp GGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHH
Confidence 43335 999999887766532110 0111 0111 112221112225544455677
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CCccccCCCc--EEEEEeCCCccHHHHHHHHHHhCCeEE--ecccCCCCCCCCcEEEEE
Q psy16848 383 ELRAKHQDIVAYLRNELIQI-GFPVEHTPSH--IIPIKIGNPALNTKICDMLLKEKGHYV--QPINYPTVPVGEEKIRLA 457 (514)
Q Consensus 383 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~--~~~i~l~~~~~~~~~~~~Ll~~~GI~v--~~~~~~~~~~~~~~iRl~ 457 (514)
++.++.+++++++.+.|+++ |+.+..+... ++.+.++ .+..++.+.|. ++||.+ .++.++. ++++|++
T Consensus 344 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~-~~gi~v~~~~~~~~~----~~~lRis 416 (438)
T 1wyu_A 344 EVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALP--KDPEAVRRALA-ERGFHGATPVPREYG----ENLALFA 416 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECS--SCHHHHHHHHH-HTTCCCCEECCTTSC----SSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEECCCCCeEEEEEEeCC--CCHHHHHHHHH-HCCceeccccccccC----CCeEEEE
Confidence 88999999999999999998 8887654322 3345443 35788999996 889998 5555321 5699999
Q ss_pred eCCCCCHHHHHHHHHHHHHHH
Q psy16848 458 PTPFHTREMIDKFVTDLLAVW 478 (514)
Q Consensus 458 ~~~~~t~e~id~~~~~l~~~l 478 (514)
++..+|++|+++++++|++++
T Consensus 417 ~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 417 ATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp CCTTCCHHHHHHHHHHHHHHC
T ss_pred ecccCCHHHHHHHHHHHHHHh
Confidence 999999999999999998763
No 224
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.88 E-value=1.8e-21 Score=203.79 Aligned_cols=305 Identities=13% Similarity=0.062 Sum_probs=207.8
Q ss_pred cchHHHHHHHHHHhHcCCC------------cEEEEeccccccccchhhccc-----------------cCCCceEEecC
Q psy16848 58 NSLFHEKLEEDVAKLHQKE------------AGLVFTSCYVANDSTLFTLGK-----------------MIPGLHYISDA 108 (514)
Q Consensus 58 ~~~~~~~~~~~la~~~~~~------------~~i~~~sGt~a~~~~l~~l~~-----------------~~~gd~v~~~~ 108 (514)
..++.+++.+++++++|.+ .+++++|||++|+.++.+... ..++++|+++.
T Consensus 116 ~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~ 195 (481)
T 4e1o_A 116 CTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASD 195 (481)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEET
T ss_pred HHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcC
Confidence 3456666777788888865 347888899999988876542 12678999999
Q ss_pred ccchhhhhhhhcCCCCeeeccCC-----ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEee
Q psy16848 109 GNHASMIQGIRNSSAPKIIYRHN-----DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD 183 (514)
Q Consensus 109 ~~h~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (514)
.+|.++..+++..|.+++.++.+ |+++|++.|.+...
T Consensus 196 ~~H~s~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~-------------------------------------- 237 (481)
T 4e1o_A 196 QAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQ-------------------------------------- 237 (481)
T ss_dssp TSCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHH--------------------------------------
T ss_pred cchHHHHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHh--------------------------------------
Confidence 99999999998888887776642 44555544432211
Q ss_pred ccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEE
Q psy16848 184 EVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLV 263 (514)
Q Consensus 184 ~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~v 263 (514)
....+.++
T Consensus 238 ------------------------------------------------------------------------~g~~~~~v 245 (481)
T 4e1o_A 238 ------------------------------------------------------------------------RGLVPVFV 245 (481)
T ss_dssp ------------------------------------------------------------------------TTCEEEEE
T ss_pred ------------------------------------------------------------------------CCCCcEEE
Confidence 11125678
Q ss_pred EEecCCCCCccccCHHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEcCCcccccC-CC-eEEEe
Q psy16848 264 AFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISGTLGKAFGN-IG-GYIVG 340 (514)
Q Consensus 264 v~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~G-G~l~~ 340 (514)
+++.++|++|.+.|+++|.++|++||+++++|++|+.+.. +...... ..+ ...+|.++.++||+++. .| |+++.
T Consensus 246 v~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~--~~g-i~~aDsi~~~~hK~l~~p~g~g~l~~ 322 (481)
T 4e1o_A 246 CATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGF--LKG-IEYADSFTFNPSKWMMVHFDCTGFWV 322 (481)
T ss_dssp EEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGG--GTT-GGGCSEEEECHHHHSSCCSSCEEEEE
T ss_pred EEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHH--hcC-cccCCEEEEChHHhcCCCCceEEEEE
Confidence 8899999999999999999999999999999999995532 2211111 112 12469999999999865 34 55554
Q ss_pred -cHHHHHHHHhhcCceEec---------------cCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-C
Q psy16848 341 -TKNFIDTIRSYAAGFIFT---------------TSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-G 403 (514)
Q Consensus 341 -~~~~~~~l~~~~~~~~~~---------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g 403 (514)
++..+.........+... .+.+ .......+++..+..++++++.++..++++++.+.|++. +
T Consensus 323 ~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~-~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g 401 (481)
T 4e1o_A 323 KDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRR-FRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPS 401 (481)
T ss_dssp SBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred eCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCC-ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 455443221111111100 0111 123344445555555677889999999999999999998 8
Q ss_pred CccccC-CCcEEEEEeCC-CccHHHHHHHHHHhCC-eEEecccCCCCCCCCcEEEEEeCCC-CCHHHHHHHHHHHHHHHH
Q psy16848 404 FPVEHT-PSHIIPIKIGN-PALNTKICDMLLKEKG-HYVQPINYPTVPVGEEKIRLAPTPF-HTREMIDKFVTDLLAVWK 479 (514)
Q Consensus 404 ~~~~~~-~~~~~~i~l~~-~~~~~~~~~~Ll~~~G-I~v~~~~~~~~~~~~~~iRl~~~~~-~t~e~id~~~~~l~~~l~ 479 (514)
+++..+ ..+++.+.++. .....++.++|. ++| +.+.+... .+..++|+++... +|++|+++++++|+++++
T Consensus 402 ~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~-~~g~~~~~~~~~----~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~ 476 (481)
T 4e1o_A 402 FEIPAKRHLGLVVFRLKGPNSLTENVLKEIA-KAGRLFLIPATI----QDKLIIRFTVTSQFTTRDDILRDWNLIRDAAT 476 (481)
T ss_dssp EECCSCCCSSEEEEEESSCHHHHHHHHHHHH-HHCSSBCEEEEE----TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred eEEecCCceeEEEEEeCCchHHHHHHHHHHH-hCCeEEEEeeEE----CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 877543 45677888754 334678888986 666 45444332 3456899997744 489999999999999887
Q ss_pred Hc
Q psy16848 480 SL 481 (514)
Q Consensus 480 ~~ 481 (514)
++
T Consensus 477 ~l 478 (481)
T 4e1o_A 477 LI 478 (481)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 225
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.88 E-value=1.9e-22 Score=202.84 Aligned_cols=323 Identities=12% Similarity=0.045 Sum_probs=216.8
Q ss_pred CCCChhHHHHHHHHHHHhCCCCCC----cCcccCcchHHHHHHHHHHhHcCCCc---EEEE-eccccccccchhhccccC
Q psy16848 28 YKVPKGGRKCLGEALEKFGTGAGG----TRNISGNSLFHEKLEEDVAKLHQKEA---GLVF-TSCYVANDSTLFTLGKMI 99 (514)
Q Consensus 28 ~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~la~~~~~~~---~i~~-~sGt~a~~~~l~~l~~~~ 99 (514)
+.-+|+|.+++.+.+..+..+..+ +.......+..++.++.+++++|.+. ++|+ .|||+++.+++..+....
T Consensus 22 ~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~~ 101 (377)
T 3e77_A 22 SMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLK 101 (377)
T ss_dssp CCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGGS
T ss_pred CCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCCC
Confidence 334789999999988754432221 11111135677889999999999753 4554 478899888888886533
Q ss_pred CCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCce
Q psy16848 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGAL 179 (514)
Q Consensus 100 ~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (514)
+||++++-...|.+.. .. +.++++|..
T Consensus 102 ~Gd~v~~~~~g~~~~~-~~----------------------------------------------------~~a~~~G~~ 128 (377)
T 3e77_A 102 AGRCADYVVTGAWSAK-AA----------------------------------------------------EEAKKFGTI 128 (377)
T ss_dssp TTCEEEECCCSHHHHH-HH----------------------------------------------------HHHTTTSEE
T ss_pred CCCeEEEEECCHHHHH-HH----------------------------------------------------HHHHHhCCc
Confidence 4898876666655431 10 111122211
Q ss_pred EEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC-ChhHHHHHHhhccCC
Q psy16848 180 TFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN-DVNHLTQVLENMDVK 258 (514)
Q Consensus 180 ~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~~l~~~~~~ 258 (514)
+ +.++.+ +...+.+.++...++
T Consensus 129 ~---------------------------------------------------------~~~~~~~~~~~~~~~~~~~i~~ 151 (377)
T 3e77_A 129 N---------------------------------------------------------IVHPKLGSYTKIPDPSTWNLNP 151 (377)
T ss_dssp E---------------------------------------------------------ECSCCCSSSCSCCCGGGCCCCT
T ss_pred e---------------------------------------------------------EEeccCCCcCCCCChHHhccCC
Confidence 1 111100 000000112334456
Q ss_pred CceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC-eE
Q psy16848 259 IPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG-GY 337 (514)
Q Consensus 259 ~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G-G~ 337 (514)
++++|.+++..|.+|.+.|+ +|+++|+++++|.++++|.. +.+.. +.+++++|.+|++|+.| |+
T Consensus 152 ~t~lV~~~h~et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~--------~id~~--~~~~~~~s~~K~~gp~G~g~ 216 (377)
T 3e77_A 152 DASYVYYCANETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSK--------PVDVS--KFGVIFAGAQKNVGSAGVTV 216 (377)
T ss_dssp TCSCEEEESEETTTTEECSS-----CCCCTTCCEEEECTTTTTSS--------CCCGG--GCSEEEEEGGGTTSCTTCEE
T ss_pred CccEEEEeCccCchheEchh-----hhccCCCEEEEEcccccCCC--------CCchh--hcCEEEEecccccCCCccEE
Confidence 78999999999999999998 47789999999999998764 22221 23467789999999989 99
Q ss_pred EEecHHHHHHHHhhcCce----------EeccCCcHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHHHHhC-CCc
Q psy16848 338 IVGTKNFIDTIRSYAAGF----------IFTTSLPPTVLAGAREAIRILSSQ-EGVELRAKHQDIVAYLRNELIQI-GFP 405 (514)
Q Consensus 338 l~~~~~~~~~l~~~~~~~----------~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~ 405 (514)
++.++++++.+.+....+ ....+.+.....++.++++++.+. +++++.++.+++.+++.+.|+++ |+.
T Consensus 217 l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~ 296 (377)
T 3e77_A 217 VIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFY 296 (377)
T ss_dssp EEEETTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSE
T ss_pred EEEcHHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence 988877654332211110 001255677788889999988777 78999999999999999999998 765
Q ss_pred ccc----CCCc-EEEEEeCCC---cc-HHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848 406 VEH----TPSH-IIPIKIGNP---AL-NTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA 476 (514)
Q Consensus 406 ~~~----~~~~-~~~i~l~~~---~~-~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~ 476 (514)
+.. ..++ ++.|.+++. .+ ...+.+.+. ++||.+.++... .+.+|+|+...+|++|++++++.|++
T Consensus 297 ~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~l~~l~-~~Gi~~~~g~~~-----~g~iRiS~~~~~t~edId~l~~al~~ 370 (377)
T 3e77_A 297 VCPVEPQNRSKMNIPFRIGNAKGDDALEKRFLDKAL-ELNMLSLKGHRS-----VGGIRASLYNAVTIEDVQKLAAFMKK 370 (377)
T ss_dssp ECCSCGGGBCSSEEEEEESSTTCCHHHHHHHHHHHH-HTTEESCBCCTT-----TCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ecCCCHHHcCCcEEEEEcCCCCCchhHHHHHHHHHH-HCCcEEeCCCCc-----CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 322 1233 577888752 11 246777784 899998876531 34699999999999999999999999
Q ss_pred HHHHc
Q psy16848 477 VWKSL 481 (514)
Q Consensus 477 ~l~~~ 481 (514)
++++-
T Consensus 371 ~~~~~ 375 (377)
T 3e77_A 371 FLEMH 375 (377)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 98763
No 226
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.87 E-value=9.3e-21 Score=200.17 Aligned_cols=308 Identities=14% Similarity=0.129 Sum_probs=202.2
Q ss_pred cchHHHHHHHHHHhHcCCC--cEEEEeccccccccchhhccc------cCCCc------eEEecCccchhhhhhhhcCCC
Q psy16848 58 NSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFTLGK------MIPGL------HYISDAGNHASMIQGIRNSSA 123 (514)
Q Consensus 58 ~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~l~~------~~~gd------~v~~~~~~h~~~~~~~~~~~~ 123 (514)
..++..++++++++++|.+ .+++++|||+|+..++.++.. ..+|| .|++++..|.++..+++..|.
T Consensus 146 ~~~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~ 225 (515)
T 2jis_A 146 FVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGL 225 (515)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHcCC
Confidence 3566778889999999975 567788899999888877631 01465 899999999999988887766
Q ss_pred ---CeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceee
Q psy16848 124 ---PKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGE 200 (514)
Q Consensus 124 ---~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~ 200 (514)
+++.++.++ .+
T Consensus 226 g~~~v~~v~~~~---------------------------------------------------------------~~--- 239 (515)
T 2jis_A 226 GTDSVRVVKADE---------------------------------------------------------------RG--- 239 (515)
T ss_dssp CGGGEEEECBCT---------------------------------------------------------------TS---
T ss_pred CCCcEEEEecCC---------------------------------------------------------------CC---
Confidence 554443310 00
Q ss_pred ecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhcc--CCCceEEEEecCCCCCccccCH
Q psy16848 201 RDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD--VKIPKLVAFETVHSMTGAICPL 278 (514)
Q Consensus 201 ~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~--~~~~~~vv~~~~~nptG~~~~l 278 (514)
.-|.+.+++.+++.. ..++++|++++++|++|.+.|+
T Consensus 240 -----------------------------------------~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l 278 (515)
T 2jis_A 240 -----------------------------------------KMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPL 278 (515)
T ss_dssp -----------------------------------------CBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCH
T ss_pred -----------------------------------------cCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCH
Confidence 014455555554421 2247899999999999999999
Q ss_pred HHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc-CCC-eEEEecHH--HHHHHHhhcCc
Q psy16848 279 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG-NIG-GYIVGTKN--FIDTIRSYAAG 354 (514)
Q Consensus 279 ~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg-~~G-G~l~~~~~--~~~~l~~~~~~ 354 (514)
++|.++|++||+++|+|++|+.+....+... ....+ ..++|++++|+||+++ +.| |+++.+++ +++........
T Consensus 279 ~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~-~~~~g-~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~ 356 (515)
T 2jis_A 279 EAIADVCQRHGLWLHVDAAWGGSVLLSQTHR-HLLDG-IQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQAS 356 (515)
T ss_dssp HHHHHHHHHHTCEEEEEETTGGGGGGCTTTG-GGGTT-GGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---
T ss_pred HHHHHHHHHcCCeEEEehhhhhHHHhChhhH-hhcCC-CccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCch
Confidence 9999999999999999999996554211000 01222 1368999999999986 445 88887765 66543211111
Q ss_pred eEe----------c---------cCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccccC-CCcE
Q psy16848 355 FIF----------T---------TSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEHT-PSHI 413 (514)
Q Consensus 355 ~~~----------~---------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~~ 413 (514)
+.. . .......+.++ +..+..++++++.++..++++++.+.|++. ++.+..+ ....
T Consensus 357 yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~---l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~ 433 (515)
T 2jis_A 357 YLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLM---WKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVN 433 (515)
T ss_dssp ------CCSCGGGCCGGGCSCSSCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSE
T ss_pred hccCCcccccccCCCCCCCCCCCCcccHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeE
Confidence 100 0 01112223333 333335567788999999999999999987 7776643 3445
Q ss_pred EEEEe-CCC-------cc--------HHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEe-CCCCCHHHHHHHHHHHHH
Q psy16848 414 IPIKI-GNP-------AL--------NTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP-TPFHTREMIDKFVTDLLA 476 (514)
Q Consensus 414 ~~i~l-~~~-------~~--------~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~-~~~~t~e~id~~~~~l~~ 476 (514)
+.+++ +.. .. ...+.+.+. +.|+.+..... ......++|+++ +..+|++|+++++++|++
T Consensus 434 v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~-~~G~~~~~~~~--~~~~~~~lRis~~~~~~t~edid~~~~~l~~ 510 (515)
T 2jis_A 434 VCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMV-KEGSMMIGYQP--HGTRGNFFRVVVANSALTCADMDFLLNELER 510 (515)
T ss_dssp EEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHH-HHTSCEEEEEE--ETTEEEEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEEEeCccccccccchhHHHHHHHHHHHHHHHHH-hcCCEEEEEEE--ECCceEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 55654 211 11 112566675 77865421110 012246899999 788999999999999998
Q ss_pred HHHH
Q psy16848 477 VWKS 480 (514)
Q Consensus 477 ~l~~ 480 (514)
++++
T Consensus 511 ~~~~ 514 (515)
T 2jis_A 511 LGQD 514 (515)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 8754
No 227
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.87 E-value=6.7e-21 Score=194.80 Aligned_cols=340 Identities=11% Similarity=0.010 Sum_probs=211.0
Q ss_pred CCceeeecccCCCCC---C----hhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC-Cc--EEEEeccc
Q psy16848 16 SNRVTCRLSSVQYKV---P----KGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK-EA--GLVFTSCY 85 (514)
Q Consensus 16 ~g~~~~d~~~~~~~~---~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~--~i~~~sGt 85 (514)
++..-||++=+-|.+ . |.|++|..+.++. +. ...+....|..++.+.+.+.+-.-... +. .+.+.+||
T Consensus 42 d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~-~~-~~~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggt 119 (420)
T 4h51_A 42 AKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDM-NL-DYEYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGT 119 (420)
T ss_dssp CCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHT-TC-CCCCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHH
T ss_pred CCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcC-CC-CCCCCCcCChHHHHHHHHHHhcCCCccccccceeeecCch
Confidence 444468886555553 2 4566665555543 22 123445566666655555443211111 12 34456788
Q ss_pred cccccchhhccc--cCCCceEEecCccchhhhhhhhcCCCCeee-ccCCChHHHHHHHHhcccCCCcEEEeeccccccCC
Q psy16848 86 VANDSTLFTLGK--MIPGLHYISDAGNHASMIQGIRNSSAPKII-YRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGA 162 (514)
Q Consensus 86 ~a~~~~l~~l~~--~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
.|+..++..+.+ ..|||.|++++++|......++.+|.+.+. ++..+.+
T Consensus 120 ga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~---------------------------- 171 (420)
T 4h51_A 120 GAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPK---------------------------- 171 (420)
T ss_dssp HHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGG----------------------------
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEEEeecccccc----------------------------
Confidence 776655544432 459999999999999998888888876442 2221000
Q ss_pred ccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC
Q psy16848 163 ICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH 242 (514)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~ 242 (514)
.. .
T Consensus 172 --------------------------------~~---------------------------------------------~ 174 (420)
T 4h51_A 172 --------------------------------TV---------------------------------------------S 174 (420)
T ss_dssp --------------------------------GT---------------------------------------------E
T ss_pred --------------------------------cc---------------------------------------------C
Confidence 00 0
Q ss_pred CChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCC-CCcc-ccCCCc
Q psy16848 243 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHG-AGIG-ERDGQL 317 (514)
Q Consensus 243 ~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~-~~~~-~~~~~~ 317 (514)
.|++.+.+.+++. ++++++++.++||||||..++ +++|.++|+++++++|+|++|.....+... .... ......
T Consensus 175 ~d~~~~~~~l~~~-~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~ 253 (420)
T 4h51_A 175 LNFEGMKKDILAA-PDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARR 253 (420)
T ss_dssp ECHHHHHHHHHHS-CSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHT
T ss_pred CCHHHHHHHHhcc-CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhh
Confidence 1455666666544 566889999999999999999 899999999999999999999843332110 0000 000002
Q ss_pred cCceEEEcCCcccccCCC---eEEEecHHHHHHHHh-------hcCceEeccCCcHHHHHHHHHHHHH-----hhhchHH
Q psy16848 318 HNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRS-------YAAGFIFTTSLPPTVLAGAREAIRI-----LSSQEGV 382 (514)
Q Consensus 318 ~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~a~~~~l~~-----~~~~~~~ 382 (514)
....+++.||||.++.+| ||+++..+..+.... ..... ..+.+...+.++...+.. .....++
T Consensus 254 ~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~--~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~ 331 (420)
T 4h51_A 254 GIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREE--YTCPPAHGARLAHLILSNNELRKEWEAELS 331 (420)
T ss_dssp TCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTT--TSSCCHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcc--cCcchHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 245788899999999888 998775443332221 11111 224455555555555542 1134567
Q ss_pred HHHHHHHHHHHHHHHHHHhCCC----ccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEe
Q psy16848 383 ELRAKHQDIVAYLRNELIQIGF----PVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP 458 (514)
Q Consensus 383 ~~~~~~~~~~~~l~~~L~~~g~----~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~ 458 (514)
.++++++++++.+.+.|++.|. .++.++++||.+ ++- ..+.++.| +++||++.++ -||++
T Consensus 332 ~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~-~gl---s~e~v~~L-~e~~Vy~~~~-----------gRis~ 395 (420)
T 4h51_A 332 AMAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSF-LGL---SKAQCEYC-QNHNIFITVS-----------GRANM 395 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEE-CCC---CHHHHHHH-HHTTEECCTT-----------CEEEG
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEe-cCc---CHHHHHHH-HhCCEEEcCC-----------CEEEe
Confidence 7889999999999999999853 334445555543 221 23455677 5999998632 19999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848 459 TPFHTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 459 ~~~~t~e~id~~~~~l~~~l~~~~ 482 (514)
+ ..++++|++++++|.++++++.
T Consensus 396 A-gl~~~ni~~~a~aI~~vvr~i~ 418 (420)
T 4h51_A 396 A-GLTHETALMLAQTINDAVRNVN 418 (420)
T ss_dssp G-GCCHHHHHHHHHHHHHHHC---
T ss_pred c-cCCHHHHHHHHHHHHHHHHHhh
Confidence 7 5789999999999999998764
No 228
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.87 E-value=1.9e-21 Score=196.59 Aligned_cols=206 Identities=10% Similarity=0.064 Sum_probs=150.6
Q ss_pred hhccCCCceEEEEecCCCCCccc-cCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848 253 ENMDVKIPKLVAFETVHSMTGAI-CPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF 331 (514)
Q Consensus 253 ~~~~~~~~~~vv~~~~~nptG~~-~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l 331 (514)
+...+++|++|.+.+..|.+|.+ .|+++|. +|+++++|.++++|.. +.+.. ..+++++|.+|++
T Consensus 160 ~~~l~~~t~lV~~~h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~--------pidv~--~~~~~~~s~hK~l 224 (386)
T 3qm2_A 160 EWQLSDNAAYLHYCPNETIDGIAIDETPDFG-----PEVVVTADFSSTILSA--------PLDVS--RYGVIYAGAQKNI 224 (386)
T ss_dssp GCCCCTTCSCEEECSEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSS--------CCCGG--GCSEEEEETTTTT
T ss_pred HhhcCCCCcEEEEECCcCCcCEecCchhhhc-----CCCEEEEEcccccCCC--------CCCcc--ccCEEEEeccccc
Confidence 34455678999999999999996 7888875 8999999999998764 22221 2245668999999
Q ss_pred cCCC-eEEEecHHHHHHHHhhcC-----------ceEeccCCcHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHH
Q psy16848 332 GNIG-GYIVGTKNFIDTIRSYAA-----------GFIFTTSLPPTVLAGAREAIRILSSQ-EGVELRAKHQDIVAYLRNE 398 (514)
Q Consensus 332 g~~G-G~l~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~ 398 (514)
|+.| |+++.++++++.+.+... +..+ .+.+.....++.++++++.+. +++++.++.+++.+++.+.
T Consensus 225 GP~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~-gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~ 303 (386)
T 3qm2_A 225 GPAGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMF-NTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGV 303 (386)
T ss_dssp CCTTEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC--------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCC-CCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 9989 999998877543322111 1111 134555677888888888766 6899999999999999999
Q ss_pred HHhCCCc-cc-c--CCC-cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Q psy16848 399 LIQIGFP-VE-H--TPS-HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTD 473 (514)
Q Consensus 399 L~~~g~~-~~-~--~~~-~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~ 473 (514)
|+++++- .. . ..+ .++.+.+++.....++.+.| +++||.+..+..+. +.+|+++...+|++|||++++.
T Consensus 304 l~~~~~~~~~~~~~~rs~~iv~f~~~~~~~~~~~~~~L-~~~gI~~~~g~~~~-----~~iRiS~~~~~t~edId~l~~~ 377 (386)
T 3qm2_A 304 IDNSDFYRNDVAQANRSRMNVPFQLADNTLDKVFLEES-FAAGLHALKGHRVV-----GGMRASIYNAMPIEGVKALTDF 377 (386)
T ss_dssp HHTCSSEECCBCGGGBCSSEEEEEESSGGGHHHHHHHH-HHTTEECCBCCTTT-----CSEEEECCTTSCHHHHHHHHHH
T ss_pred HHHCCCcccCCCHHHcCceEEEEECCCccccHHHHHHH-HHCCCEEeCCCCCc-----CeEEEEcCCCCCHHHHHHHHHH
Confidence 9988651 11 1 123 37788887532236777777 59999988766532 3599999999999999999999
Q ss_pred HHHHHHH
Q psy16848 474 LLAVWKS 480 (514)
Q Consensus 474 l~~~l~~ 480 (514)
|+++.++
T Consensus 378 l~~~~~~ 384 (386)
T 3qm2_A 378 MIDFERR 384 (386)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998765
No 229
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.87 E-value=2.3e-21 Score=208.64 Aligned_cols=312 Identities=14% Similarity=0.112 Sum_probs=209.6
Q ss_pred chHHHHHHHHHHhHcCCCcEEEEeccc-cccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848 59 SLFHEKLEEDVAKLHQKEAGLVFTSCY-VANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT 137 (514)
Q Consensus 59 ~~~~~~~~~~la~~~~~~~~i~~~sGt-~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~ 137 (514)
.....++++++|+++|.+++++++||| .||.+++.+++. |||.|+++.+.|.++..+++.+|++++.++... +
T Consensus 194 ~g~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~~--pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~-~--- 267 (715)
T 3n75_A 194 SGPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAP--AGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTR-N--- 267 (715)
T ss_dssp BTHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCC--TTCEEEEESSCCHHHHHHHHHSCCEEEEECCCB-C---
T ss_pred cHHHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhCC--CCCEEEECCCccHHHHHHHHHcCCEEEEEeccc-c---
Confidence 455789999999999999999999995 789999988876 999999999999999999999999988765410 0
Q ss_pred HHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848 138 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN 217 (514)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~ 217 (514)
.|...+.+.
T Consensus 268 ------------------~~gi~~~i~----------------------------------------------------- 276 (715)
T 3n75_A 268 ------------------AYGILGGIP----------------------------------------------------- 276 (715)
T ss_dssp ------------------TTCCBCCCC-----------------------------------------------------
T ss_pred ------------------ccccccCcc-----------------------------------------------------
Confidence 000000000
Q ss_pred CceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhcc-CCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEec
Q psy16848 218 PEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD-VKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDE 296 (514)
Q Consensus 218 ~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~-~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~De 296 (514)
...-|.+.+++.+++.. .+.+++++++++ |++|.+.++++|.++|++++ +++||
T Consensus 277 ----------------------~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDE 331 (715)
T 3n75_A 277 ----------------------QSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDS 331 (715)
T ss_dssp ----------------------GGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEEC
T ss_pred ----------------------cccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEcc
Confidence 00004566666666542 122458888888 99999999999999998664 79999
Q ss_pred cccccc-cCCCCCCccccCCCccCceEE---EcCCcccccC--CCeEEEecHHHH-HHHHhhcCceEeccCCcHHHHHHH
Q psy16848 297 VHAVGL-YGEHGAGIGERDGQLHNMDII---SGTLGKAFGN--IGGYIVGTKNFI-DTIRSYAAGFIFTTSLPPTVLAGA 369 (514)
Q Consensus 297 a~~~g~-~g~~~~~~~~~~~~~~~~di~---~~S~sK~lg~--~GG~l~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~a~ 369 (514)
+|+.+. +++...+...... ...+|++ ++|+||++++ .||++.+++++. +.+... ..+.++++.++..++++
T Consensus 332 AH~~~~~f~~~~~~~~al~~-g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~~-~~~~~STSpsy~~~Asl 409 (715)
T 3n75_A 332 AWVPYTNFSPIYEGKCGMSG-GRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEA-YMMHTTTSPHYGIVAST 409 (715)
T ss_dssp TTCTTGGGSGGGTTSSTTSS-SCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHHH-HHHTSCSSCCHHHHHHH
T ss_pred ccccccccCCcccccccccc-CcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHHH-HHhhcCCCchHHHHHHH
Confidence 998543 2322111111111 1124544 8999999976 358887765421 222221 12223567888888998
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-C------CccccCC------------------------C------c
Q psy16848 370 REAIRILSSQEGVELRAKHQDIVAYLRNELIQI-G------FPVEHTP------------------------S------H 412 (514)
Q Consensus 370 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g------~~~~~~~------------------------~------~ 412 (514)
.++++.+......++++++.++.+++++.|+++ + +.+..+. + .
T Consensus 410 daA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~ 489 (715)
T 3n75_A 410 ETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPI 489 (715)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTT
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCe
Confidence 889888754345668888999999999888765 1 2221110 0 0
Q ss_pred EEEEEeCC----------CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848 413 IIPIKIGN----------PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 413 ~~~i~l~~----------~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~ 482 (514)
-+.+..+. +.....+.+.| +++||.+.-. +...+-+-++...|++++++++++|.++.+.+.
T Consensus 490 Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L-~~~~I~~E~~-------d~~~vl~l~s~g~~~~~~~~L~~aL~~~~~~~~ 561 (715)
T 3n75_A 490 KVTLLTPGMEKDGTMSDFGIPASIVAKYL-DEHGIVVEKT-------GPYNLLFLFSIGIDKTKALSLLRALTDFKRAFD 561 (715)
T ss_dssp EEEEECSCBCTTSCBCSSCCCHHHHHHHH-HHTTCCCSEE-------ETTEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCCCccccCCCcHHHHHHHH-HHCCCEEEec-------CCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 12343332 23455777777 5889997522 345677778888999999999999998876543
No 230
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.87 E-value=1.5e-20 Score=197.26 Aligned_cols=310 Identities=12% Similarity=0.021 Sum_probs=204.5
Q ss_pred cchHHHHHHHHHHhHcCCCc-----------EEEEeccccccccchhhcccc--C-----CC---------c-eEEecCc
Q psy16848 58 NSLFHEKLEEDVAKLHQKEA-----------GLVFTSCYVANDSTLFTLGKM--I-----PG---------L-HYISDAG 109 (514)
Q Consensus 58 ~~~~~~~~~~~la~~~~~~~-----------~i~~~sGt~a~~~~l~~l~~~--~-----~g---------d-~v~~~~~ 109 (514)
..++.+++.+++++++|.+. ++++++||+|+..++.++... . .| + .|+++.+
T Consensus 111 ~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~ 190 (486)
T 1js3_A 111 CTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQ 190 (486)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETT
T ss_pred HHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCC
Confidence 34566677788899988763 578889999998888765321 0 03 2 4888999
Q ss_pred cchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848 110 NHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189 (514)
Q Consensus 110 ~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (514)
.|.++..+++..|.+++.++.++
T Consensus 191 ~h~s~~~~~~~~G~~v~~v~~d~--------------------------------------------------------- 213 (486)
T 1js3_A 191 AHSSVERAGLIGGVKLKAIPSDG--------------------------------------------------------- 213 (486)
T ss_dssp CCHHHHHHHHHHTCEEEEECCCT---------------------------------------------------------
T ss_pred CcHHHHHHHHhCCCceEEeecCC---------------------------------------------------------
Confidence 99999999988888877665420
Q ss_pred ccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccC--CCceEEEEec
Q psy16848 190 LYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV--KIPKLVAFET 267 (514)
Q Consensus 190 ~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~--~~~~~vv~~~ 267 (514)
.+ .-|.+.+++.+.+... .++.+|++++
T Consensus 214 ------~~--------------------------------------------~~d~~~L~~~i~~~~~~g~~p~~vv~~~ 243 (486)
T 1js3_A 214 ------KF--------------------------------------------AMRASALQEALERDKAAGLIPFFVVATL 243 (486)
T ss_dssp ------TS--------------------------------------------CCCHHHHHHHHHHHHHTTCEEEEEEEEB
T ss_pred ------CC--------------------------------------------CCCHHHHHHHHHHHHhCCCCceEEEEeC
Confidence 00 0144445555543211 1134888999
Q ss_pred CCCCCccccCHHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEcCCcccccC-CC-eEEEecHH-
Q psy16848 268 VHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISGTLGKAFGN-IG-GYIVGTKN- 343 (514)
Q Consensus 268 ~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~G-G~l~~~~~- 343 (514)
++|++|.+.|+++|.++|++||+++++|++|+.+.. .+..... ..++ .++|.+++|+||+++. .| |+++.+++
T Consensus 244 ~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~--~~g~-~~adsi~~~~hK~~~~p~~~G~l~~~~~~ 320 (486)
T 1js3_A 244 GTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHL--LNGV-EFADSFNFNPHKWLLVNFDCSAMWVKRRT 320 (486)
T ss_dssp SCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGG--GTTG-GGCSEEEECHHHHSSCCSSCEEEEESCHH
T ss_pred CCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHH--hcCc-cccCeeEEchhhhcCCCcceEEEEEeCHH
Confidence 999999999999999999999999999999996543 1111111 1222 3679999999999875 34 88877543
Q ss_pred H-HHHHHhhcCceE--------------eccCC-cHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcc
Q psy16848 344 F-IDTIRSYAAGFI--------------FTTSL-PPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPV 406 (514)
Q Consensus 344 ~-~~~l~~~~~~~~--------------~~~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 406 (514)
. .+.+........ ++... ......+..+++..+..++++++.++..++++++.+.|++. ++.+
T Consensus 321 ~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~ 400 (486)
T 1js3_A 321 DLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEV 400 (486)
T ss_dssp HHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred HHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 3 333211000000 00000 01122333444544445677888999999999999999987 7776
Q ss_pred cc-CCCcEEEEEeCCC-ccHHHHHHHHHHhCCeEE-ecccCCCCCCCCcEEEEEe-CCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848 407 EH-TPSHIIPIKIGNP-ALNTKICDMLLKEKGHYV-QPINYPTVPVGEEKIRLAP-TPFHTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 407 ~~-~~~~~~~i~l~~~-~~~~~~~~~Ll~~~GI~v-~~~~~~~~~~~~~~iRl~~-~~~~t~e~id~~~~~l~~~l~~~~ 482 (514)
.. +..+++.+.++.. ....++.+.|. ++|+.+ .+..+ .+..++|+++ +..+|++++++++++|+++++++.
T Consensus 401 ~~~~~~~~v~f~~~~~~~~~~~l~~~L~-~~g~~~~~~~~~----~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~~~ 475 (486)
T 1js3_A 401 CAEVTLGLVCFRLKGSDGLNEALLERIN-SARKIHLVPCRL----RGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELL 475 (486)
T ss_dssp CSCCCSSEEEEEESSCHHHHHHHHHHHH-HHTSCBCEEEEE----TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCceeEEEEEecChHHHHHHHHHHHH-hcCCEEEEEEEE----CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 54 5566888877642 23477888886 667543 33322 2357999997 445789999999999999987763
No 231
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.86 E-value=6.3e-21 Score=191.08 Aligned_cols=202 Identities=12% Similarity=0.039 Sum_probs=154.2
Q ss_pred CCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC-
Q psy16848 257 VKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG- 335 (514)
Q Consensus 257 ~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G- 335 (514)
++++++|.+++..|.+|.+.|. +++ +|+++++|.++++|.. +.+.. +.|++++|.||++|+.|
T Consensus 138 ~~~t~lv~~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~--------~id~~--~~d~~~~s~~K~~gp~G~ 201 (361)
T 3m5u_A 138 SDNADYAYICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSR--------KVDFS--NIALFYGGVQKNAGISGL 201 (361)
T ss_dssp CTTSSEEEEESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSS--------CCCCT--TEEEEEEETTTTSSCTTC
T ss_pred CCCCCEEEEeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCC--------CCCcc--cCCEEEEechhccCCCcc
Confidence 4578999999988999998772 333 4999999999998764 22221 47899999999999989
Q ss_pred eEEEecHHHHHHHHh-hcCce-E---------eccCCcHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHHHHhCC
Q psy16848 336 GYIVGTKNFIDTIRS-YAAGF-I---------FTTSLPPTVLAGAREAIRILSSQ-EGVELRAKHQDIVAYLRNELIQIG 403 (514)
Q Consensus 336 G~l~~~~~~~~~l~~-~~~~~-~---------~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g 403 (514)
|+++.++++++.+.+ ....+ . ...+.+.....++.++++++.+. +++++.++.+++.+++.+.|++++
T Consensus 202 g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~ 281 (361)
T 3m5u_A 202 SCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSN 281 (361)
T ss_dssp EEEEEEHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTST
T ss_pred EEEEEcHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999887764 11110 0 01245677788889999988777 799999999999999999999985
Q ss_pred -C-ccccC---CC-cEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848 404 -F-PVEHT---PS-HIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA 476 (514)
Q Consensus 404 -~-~~~~~---~~-~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~ 476 (514)
+ ....+ .. .++.+.+++ .....++.+.| +++||.+.+++.. .+.+|+++..++|++|++++++.|++
T Consensus 282 g~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~L-~~~gI~~~~g~~~-----~g~iRiS~~~~~t~edId~l~~al~~ 355 (361)
T 3m5u_A 282 GFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVKEA-EEAGMIGLKGHRI-----LGGIRASIYNALNLDQVKTLCEFMKE 355 (361)
T ss_dssp TSEEESSCGGGBCSSEEEEEESSCTTHHHHHHHHH-HHTTEECCBCCTT-----TCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeeeccCCHHHcCCeEEEEECCCchhhhHHHHHHH-HHCCCEEecCCCc-----cCeEEEEccCCCCHHHHHHHHHHHHH
Confidence 5 33211 22 377788875 22225677777 5899999876542 24599999999999999999999999
Q ss_pred HHHH
Q psy16848 477 VWKS 480 (514)
Q Consensus 477 ~l~~ 480 (514)
+.++
T Consensus 356 ~~~~ 359 (361)
T 3m5u_A 356 FQGK 359 (361)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8765
No 232
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.86 E-value=2.2e-20 Score=192.07 Aligned_cols=254 Identities=15% Similarity=0.174 Sum_probs=178.1
Q ss_pred hHHHHHHHHHHhHcCCCcEEE---EeccccccccchhhccccCCCceEEecC-ccchhhhhhhhcCCCCeeeccCCChHH
Q psy16848 60 LFHEKLEEDVAKLHQKEAGLV---FTSCYVANDSTLFTLGKMIPGLHYISDA-GNHASMIQGIRNSSAPKIIYRHNDVNH 135 (514)
Q Consensus 60 ~~~~~~~~~la~~~~~~~~i~---~~sGt~a~~~~l~~l~~~~~gd~v~~~~-~~h~~~~~~~~~~~~~~~~~~~~d~~~ 135 (514)
...+++++++++++|.+.+++ ++|||+|+..++.++.+ +||.|+++. +.|.+....++..+..
T Consensus 65 ~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~~--~Gd~Vl~~~~~~y~~~~~~~~l~g~~----------- 131 (431)
T 3ht4_A 65 IGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILR--PGDELLYITGKPYDTLEEIVGVRGKG----------- 131 (431)
T ss_dssp HHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTCC--TTCEEEECSSSCCTTHHHHTTSSSCS-----------
T ss_pred hhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhCC--CCCEEEEeCCCCchhHHHHHhhcccc-----------
Confidence 557899999999999988765 78999999999988876 999999998 8898887665443210
Q ss_pred HHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhc
Q psy16848 136 LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215 (514)
Q Consensus 136 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l 215 (514)
T Consensus 132 -------------------------------------------------------------------------------- 131 (431)
T 3ht4_A 132 -------------------------------------------------------------------------------- 131 (431)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCceeeecchHHHHhhCCCCEEEecC-----CChhHHHHHHhhccCCCceEEEEec-CCCCCccccC---HHHHHHHHH
Q psy16848 216 VNPEVAIHASMIQGIRNSSAPKIIYRH-----NDVNHLTQVLENMDVKIPKLVAFET-VHSMTGAICP---LKELCEVSH 286 (514)
Q Consensus 216 ~~~~v~~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~l~~~~~~~~~~vv~~~-~~nptG~~~~---l~~l~~l~~ 286 (514)
...+...|++++.++. .|++.+++.+ ++++++|++++ ++||+|...+ +++|.++|+
T Consensus 132 -----------~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l----~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~ 196 (431)
T 3ht4_A 132 -----------VGSFKEYNIGYNAVPLTEGGLVDFEAVAAAI----HSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVK 196 (431)
T ss_dssp -----------SSCSGGGTCEEEECCBCTTSSBCHHHHHHHC----CTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHH
T ss_pred -----------cchHHHcCCEEEEeCCCCCCCcCHHHHHhhc----CCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHH
Confidence 0111233555666653 2455555544 45789999995 7777776665 899999999
Q ss_pred H--cCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC----CCeEEEecHHHHHHHHhhcCc--eEec
Q psy16848 287 Q--HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN----IGGYIVGTKNFIDTIRSYAAG--FIFT 358 (514)
Q Consensus 287 ~--~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~----~GG~l~~~~~~~~~l~~~~~~--~~~~ 358 (514)
+ +|+++|+|++|+.+..+.. .. ..+.|++++|++|++|+ .||++++++++++.+...... .+..
T Consensus 197 ~~~~~~~livDea~~~~~~~~~------~~--~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~ 268 (431)
T 3ht4_A 197 EIKPDVVVFVDNCYGEFIEEQE------PC--HVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAE 268 (431)
T ss_dssp HHCTTCEEEEECTTCTTSSSCC------GG--GTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTS
T ss_pred hhCCCCEEEEeCCChhhccCCC------cc--ccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccc
Confidence 9 9999999999996543211 11 23679999999999754 569999999999988764332 2111
Q ss_pred cCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCc-----EEEEEeCCCccHHHHHHHHHH
Q psy16848 359 TSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSH-----IIPIKIGNPALNTKICDMLLK 433 (514)
Q Consensus 359 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-----~~~i~l~~~~~~~~~~~~Ll~ 433 (514)
.+.+...+.++...++.. +.++++..++++++.+.|+++|+.+.+.... ++.+.+++.....++++.|.
T Consensus 269 ~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~a~~l~~~L~~~g~~v~p~~~~~~~~li~~i~l~~~~~~~~~~~~l~- 342 (431)
T 3ht4_A 269 AGASLYSLQEMYQGFFLA-----PHVAGQALKGAIFTAAFLEKLGMNTSPAWNAPRTDLIQSVQFDDKDRMIAFCQAIQ- 342 (431)
T ss_dssp CSCCCSCSHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTCCEESCTTSCCSSSCCEEECCCHHHHHHHHHHHH-
T ss_pred cCccHHHHHHHHhHhhhH-----HHHHHHHHHHHHHHHHHHHhCcCEecCCCCCCCccEEEEEEeCCHHHHHHHHHHHH-
Confidence 122112123344444432 3467788889999999999988776443333 78888887666788999985
Q ss_pred hC
Q psy16848 434 EK 435 (514)
Q Consensus 434 ~~ 435 (514)
+.
T Consensus 343 ~~ 344 (431)
T 3ht4_A 343 YA 344 (431)
T ss_dssp HT
T ss_pred hc
Confidence 54
No 233
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.86 E-value=2e-20 Score=204.76 Aligned_cols=314 Identities=14% Similarity=0.074 Sum_probs=208.0
Q ss_pred chHHHHHHHHHHhHcCCCcEEEEeccc-cccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848 59 SLFHEKLEEDVAKLHQKEAGLVFTSCY-VANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT 137 (514)
Q Consensus 59 ~~~~~~~~~~la~~~~~~~~i~~~sGt-~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~ 137 (514)
.....++++.+++++|.++++++++|+ +++.+++.++.. |||.|+++.+.|.++..++...|++++.++... +
T Consensus 204 ~g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~~--~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~-~--- 277 (755)
T 2vyc_A 204 TGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMT--DNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSR-N--- 277 (755)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCC--TTCEEEEESSCCHHHHHHHHHHCCEEEEECCCB-C---
T ss_pred ccHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhcC--CCCEEEECCCchHHHHHHHHHcCCEEEEEeCCC-C---
Confidence 456788999999999999888888886 568999988876 999999999999999999999998887654310 0
Q ss_pred HHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848 138 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN 217 (514)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~ 217 (514)
.|...|.+
T Consensus 278 ------------------~~g~~g~i------------------------------------------------------ 285 (755)
T 2vyc_A 278 ------------------RYGIIGPI------------------------------------------------------ 285 (755)
T ss_dssp ------------------TTSCBCCC------------------------------------------------------
T ss_pred ------------------cccccccc------------------------------------------------------
Confidence 00000000
Q ss_pred CceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhc------cCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCE
Q psy16848 218 PEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENM------DVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGAL 291 (514)
Q Consensus 218 ~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~------~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~ 291 (514)
....-|.+.+++.+++. ...++++++++++ |++|.+.++++|.++|++||++
T Consensus 286 ---------------------~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~ 343 (755)
T 2vyc_A 286 ---------------------YPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDR 343 (755)
T ss_dssp ---------------------CGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSE
T ss_pred ---------------------CcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCE
Confidence 00000344444444431 1123458888887 7999999999999999999999
Q ss_pred EEEeccccccc-cCCCCCCccccCC----CccCceEEEcCCcccccC-C-CeEEEecHH--HH--HHHHhhcCceEeccC
Q psy16848 292 TFVDEVHAVGL-YGEHGAGIGERDG----QLHNMDIISGTLGKAFGN-I-GGYIVGTKN--FI--DTIRSYAAGFIFTTS 360 (514)
Q Consensus 292 li~Dea~~~g~-~g~~~~~~~~~~~----~~~~~di~~~S~sK~lg~-~-GG~l~~~~~--~~--~~l~~~~~~~~~~~~ 360 (514)
+++|++|+.+. .+...++.....+ .....+++++|+||++++ . ||+++.+++ .+ ..+......+ .+++
T Consensus 344 livDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~~~~~-~s~s 422 (755)
T 2vyc_A 344 LHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMH-ATTS 422 (755)
T ss_dssp EEEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHHHHHT-SCSS
T ss_pred EEEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHHHHHh-CCCC
Confidence 99999997321 2211101111111 111234599999999975 3 477766543 11 2222211111 1345
Q ss_pred CcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-C---------CccccC---------------------
Q psy16848 361 LPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-G---------FPVEHT--------------------- 409 (514)
Q Consensus 361 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g---------~~~~~~--------------------- 409 (514)
.+...+++..++++.+..++.++..++..++.+++++.|+++ + +.+..+
T Consensus 423 p~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (755)
T 2vyc_A 423 PLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKL 502 (755)
T ss_dssp CCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchh
Confidence 677777888888887755445678888888888888888764 3 322111
Q ss_pred -----------------------CC------cEEEEEeCC----------CccHHHHHHHHHHhCCeEEecccCCCCCCC
Q psy16848 410 -----------------------PS------HIIPIKIGN----------PALNTKICDMLLKEKGHYVQPINYPTVPVG 450 (514)
Q Consensus 410 -----------------------~~------~~~~i~l~~----------~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~ 450 (514)
.+ ..+.+..+. +.....+.+.| +++||.+.. .+
T Consensus 503 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L-~~~gI~~e~-------~~ 574 (755)
T 2vyc_A 503 LTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWL-GRHGIVPTR-------TT 574 (755)
T ss_dssp HHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHH-HTTTCCCSE-------EC
T ss_pred ccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHH-HHCCCEEee-------cC
Confidence 11 234555542 23446888888 589998742 23
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 451 EEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 451 ~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
...+|+.++..+|++++++++++|.++.+.+
T Consensus 575 ~~~v~~~~~~g~t~~~~~~l~~al~~~~~~~ 605 (755)
T 2vyc_A 575 DFQIMFLFSMGVTRGKWGTLVNTLCSFKRHY 605 (755)
T ss_dssp SSEEEEECCTTCCTTTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence 5689999999999999999999999988765
No 234
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.79 E-value=1.2e-17 Score=166.76 Aligned_cols=333 Identities=16% Similarity=0.153 Sum_probs=200.9
Q ss_pred ChhHHHHHHHHHH-HhCCCCCCcCcccCcchHHHH----HHHHHHhHcCCCcE-----EEEeccccccccchhhccccCC
Q psy16848 31 PKGGRKCLGEALE-KFGTGAGGTRNISGNSLFHEK----LEEDVAKLHQKEAG-----LVFTSCYVANDSTLFTLGKMIP 100 (514)
Q Consensus 31 ~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~la~~~~~~~~-----i~~~sGt~a~~~~l~~l~~~~~ 100 (514)
.|.+.+++-..+. +|..++++.+++.|. +..++ ..++..++||.+++ +-..||++||+++..++++ |
T Consensus 67 S~aV~~a~gS~ltnKYaEGyPg~RyYgGc-e~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All~--P 143 (490)
T 3ou5_A 67 SRAALEALGSCLNNKYSEGYPGKRYYGGA-EVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQ--P 143 (490)
T ss_dssp CHHHHHHHTSGGGTCCCCC-----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC---
T ss_pred CHHHHHHhcCcccccccCCCCCccccCCC-hHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHcC--C
Confidence 3555555555444 455666677766664 33333 34677888998874 5568999999999999987 9
Q ss_pred CceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceE
Q psy16848 101 GLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALT 180 (514)
Q Consensus 101 gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (514)
||+|+.-+..|..-+.--..... +-+.++|.|.
T Consensus 144 GD~ilg~~l~~GGHltHg~~~~~-------------------------~~v~~sg~~~---------------------- 176 (490)
T 3ou5_A 144 HDRIMGLDLPDGGHLTHGYMSDV-------------------------KRISATSIFF---------------------- 176 (490)
T ss_dssp CCCEECBC------------------------------------------------------------------------
T ss_pred CCEEEecccCCCCcccccccCCC-------------------------cccccccccc----------------------
Confidence 99999888877665421100000 0000111100
Q ss_pred EeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec------CCChhHHHHHHhh
Q psy16848 181 FVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR------HNDVNHLTQVLEN 254 (514)
Q Consensus 181 ~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~------~~d~~~l~~~l~~ 254 (514)
+.++++ .-|++.+++..++
T Consensus 177 -------------------------------------------------------~~~~Y~vd~~t~~IDyd~~~~~A~~ 201 (490)
T 3ou5_A 177 -------------------------------------------------------ESMPYKLNPKTGLIDYNQLALTARL 201 (490)
T ss_dssp ----------------------------------------------------------CBCEETTTTEECHHHHHHHHHH
T ss_pred -------------------------------------------------------cccccccCCCCCcccHHHHHHHHhh
Confidence 000110 1277778777776
Q ss_pred ccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc-cC
Q psy16848 255 MDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF-GN 333 (514)
Q Consensus 255 ~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l-g~ 333 (514)
. ++|+|+.-.-..| ..+|+++++++|++.|++|++|.+|-.|..... .. ......+|++++|.||++ |+
T Consensus 202 ~---kPklIi~G~SaY~--r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g---~~--psP~~~ADvVTtTTHKTLrGP 271 (490)
T 3ou5_A 202 F---RPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAK---VI--PSPFKHADIVTTTTHKTLRGA 271 (490)
T ss_dssp H---CCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTT---SS--CCGGGTCSEEEEESSSTTCSC
T ss_pred c---CCCeEEECCccCc--cccCHHHHHHHHhhcccEEEechhhhhhhhccc---cc--CCccccceEEeccccccccCC
Confidence 5 3678776554333 567799999999999999999999997765211 11 111235899999999999 77
Q ss_pred CCeEEEecH---------------HHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q psy16848 334 IGGYIVGTK---------------NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNE 398 (514)
Q Consensus 334 ~GG~l~~~~---------------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 398 (514)
.||++.+++ ++.+.+.....+.. ..+......++...++.....+...+..+++.++++.|.+.
T Consensus 272 rGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~-qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~ 350 (490)
T 3ou5_A 272 RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSL-QGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADA 350 (490)
T ss_dssp SCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTT-CSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEeccccccccccccchhHHHHHHHHHhhcCccc-cccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence 889998765 45566654433321 11222223333333344333566778889999999999999
Q ss_pred HHhCCCcccc--CCCcEEEEEeCCC-ccHHHHHHHHHHhCCeEEecccCCCC--CCCCcEEEEEeC----CCCCHHHHHH
Q psy16848 399 LIQIGFPVEH--TPSHIIPIKIGNP-ALNTKICDMLLKEKGHYVQPINYPTV--PVGEEKIRLAPT----PFHTREMIDK 469 (514)
Q Consensus 399 L~~~g~~~~~--~~~~~~~i~l~~~-~~~~~~~~~Ll~~~GI~v~~~~~~~~--~~~~~~iRl~~~----~~~t~e~id~ 469 (514)
|.+.|+.++. ...+++.+.+... .+..+..+.| ++.||.+..-..|+. +...+.||+..+ ..+.++|+++
T Consensus 351 L~~~G~~vvsGgTdnHlvLvDl~~~g~tG~~ae~~L-e~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~ 429 (490)
T 3ou5_A 351 LLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVL-ELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRR 429 (490)
T ss_dssp HHHTTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHH-HHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHH
T ss_pred HHhCCCeeecCCCCceEEEEeccccCCCHHHHHHHH-HHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHH
Confidence 9999999874 3566777877543 3445555555 799999974333332 223578999775 4678899999
Q ss_pred HHHHHHHHHHH
Q psy16848 470 FVTDLLAVWKS 480 (514)
Q Consensus 470 ~~~~l~~~l~~ 480 (514)
+.+.|.+++..
T Consensus 430 IA~~I~~~l~~ 440 (490)
T 3ou5_A 430 VVDFIDEGVNI 440 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988753
No 235
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.71 E-value=3e-16 Score=157.33 Aligned_cols=296 Identities=14% Similarity=0.103 Sum_probs=187.4
Q ss_pred CCCc--EEEEecccc-ccccchhhccccC--CCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCC
Q psy16848 74 QKEA--GLVFTSCYV-ANDSTLFTLGKMI--PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP 148 (514)
Q Consensus 74 ~~~~--~i~~~sGt~-a~~~~l~~l~~~~--~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~ 148 (514)
|.+. ..|..+|++ ++++++.+.++.+ .+|.|+++.+.|.|++.++.++|+.++.++..-
T Consensus 130 G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~---------------- 193 (501)
T 3hl2_A 130 GVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVL---------------- 193 (501)
T ss_dssp TCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEE----------------
T ss_pred CCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeee----------------
Confidence 7664 366666666 5777776666521 249999999999999999999999988765410
Q ss_pred cEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHH
Q psy16848 149 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQ 228 (514)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~ 228 (514)
++. ..
T Consensus 194 ----------------------------------d~~---------~~-------------------------------- 198 (501)
T 3hl2_A 194 ----------------------------------EGD---------EL-------------------------------- 198 (501)
T ss_dssp ----------------------------------ETT---------EE--------------------------------
T ss_pred ----------------------------------ccc---------cc--------------------------------
Confidence 000 00
Q ss_pred HHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccc-cCCCC
Q psy16848 229 GIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL-YGEHG 307 (514)
Q Consensus 229 ~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~-~g~~~ 307 (514)
.-|.+.+++.+++...+...+|+.+++.+..+.+.++++|.++|++||+++++|+||+.-+ ...
T Consensus 199 -------------~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~-- 263 (501)
T 3hl2_A 199 -------------RTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCM-- 263 (501)
T ss_dssp -------------EECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHH--
T ss_pred -------------CCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhh--
Confidence 0156777777776532333444444444544566789999999999999999999998322 100
Q ss_pred CCccccCCCccC-ceEEEcCCcccccC-CCe-EEE-ecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHH
Q psy16848 308 AGIGERDGQLHN-MDIISGTLGKAFGN-IGG-YIV-GTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVE 383 (514)
Q Consensus 308 ~~~~~~~~~~~~-~di~~~S~sK~lg~-~GG-~l~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 383 (514)
.++ ......+ +|+++.|.||.+-. .|| ++. .++++++.+.....+ +.+....+....++..+..+++.+
T Consensus 264 -~lp-~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~~yPG-----r~S~Spsldl~~tLL~lGr~Gy~~ 336 (501)
T 3hl2_A 264 -HLI-QQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPG-----RASASPSLDVLITLLSLGSNGYKK 336 (501)
T ss_dssp -HHH-HHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHHTSCS-----CBCSHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhH-HHHHhcCCCcEEEecccccceeecCceEEEeCCHHHHHHHHHhCCC-----CCCCcHHHHHHHHHHHHHHHHHHH
Confidence 000 0111224 99999999998743 344 443 356777777544322 112222233333444444667788
Q ss_pred HHHHHHHHHHHHHHHHHhC----CCccccCC-Cc-EEEEEeCC-----CccHHHHHHHHHHhCCeE---Eec-cc-----
Q psy16848 384 LRAKHQDIVAYLRNELIQI----GFPVEHTP-SH-IIPIKIGN-----PALNTKICDMLLKEKGHY---VQP-IN----- 443 (514)
Q Consensus 384 ~~~~~~~~~~~l~~~L~~~----g~~~~~~~-~~-~~~i~l~~-----~~~~~~~~~~Ll~~~GI~---v~~-~~----- 443 (514)
+.++..++.+++.+.|+++ |-++...+ .+ -+.+.+.. ......+...|+ .++|. |.+ +.
T Consensus 337 ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf-~r~vsG~Rvv~~~~~~~i~ 415 (501)
T 3hl2_A 337 LLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLF-TRQVSGARVVPLGSMQTVS 415 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHH-HTTCCSCEEECTTCCEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHH-hcCCCcceeecCCCceEEC
Confidence 9999999999999999885 54554443 33 33455542 123567788887 66543 321 11
Q ss_pred -----CCCCC---CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy16848 444 -----YPTVP---VGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL 483 (514)
Q Consensus 444 -----~~~~~---~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~~ 483 (514)
.+... .-..++-++....++++|+|.++++|++++.++.+
T Consensus 416 g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~ 463 (501)
T 3hl2_A 416 GYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRK 463 (501)
T ss_dssp TEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 11110 11368889999999999999999999999988754
No 236
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.69 E-value=5e-15 Score=150.58 Aligned_cols=309 Identities=13% Similarity=0.097 Sum_probs=183.5
Q ss_pred hHHHHHHHHHHhHcCCCcE--EEEecc-ccccccchhhccc--cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChH
Q psy16848 60 LFHEKLEEDVAKLHQKEAG--LVFTSC-YVANDSTLFTLGK--MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVN 134 (514)
Q Consensus 60 ~~~~~~~~~la~~~~~~~~--i~~~sG-t~a~~~~l~~l~~--~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~ 134 (514)
.+.+.+..++.+++|.+.. .++++| |.++++++.+.++ ..+++.|+++...|.|+..++.++|..++.++..-
T Consensus 98 ~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~~~-- 175 (450)
T 3bc8_A 98 KITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVL-- 175 (450)
T ss_dssp HHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEE--
T ss_pred HHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEEeee--
Confidence 4566788888888887753 445544 4354444444443 11389999999999999999999999887654410
Q ss_pred HHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhh
Q psy16848 135 HLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT 214 (514)
Q Consensus 135 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~ 214 (514)
. ++
T Consensus 176 ------------------~-----------------------------~~------------------------------ 178 (450)
T 3bc8_A 176 ------------------E-----------------------------GD------------------------------ 178 (450)
T ss_dssp ------------------E-----------------------------TT------------------------------
T ss_pred ------------------c-----------------------------Cc------------------------------
Confidence 0 00
Q ss_pred ccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEE
Q psy16848 215 LVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFV 294 (514)
Q Consensus 215 l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~ 294 (514)
-..-|.+.+++.+++...+++.+|+.++..+.+|.+.|+++|.++|++||+++++
T Consensus 179 -------------------------~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~V 233 (450)
T 3bc8_A 179 -------------------------ELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVV 233 (450)
T ss_dssp -------------------------EEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEE
T ss_pred -------------------------cCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEE
Confidence 0011566667777664322344455555555567889999999999999999999
Q ss_pred eccccccccCCCCCCccccCCCc-cCceEEEcCCcccccC-CC-eEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHH
Q psy16848 295 DEVHAVGLYGEHGAGIGERDGQL-HNMDIISGTLGKAFGN-IG-GYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAR 370 (514)
Q Consensus 295 Dea~~~g~~g~~~~~~~~~~~~~-~~~di~~~S~sK~lg~-~G-G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~ 370 (514)
|+||+.... ....++ ..... ..+|+++.|.||++.. .| +++.. +++.++.+.....+. . +.++ .+....
T Consensus 234 D~A~G~~~~--~~~~l~-~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~~~g~--~-s~Sp-sL~l~~ 306 (450)
T 3bc8_A 234 NNAYGLQSS--KCMHLI-QQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGR--A-SASP-SLDVLI 306 (450)
T ss_dssp ECTTTTTCH--HHHHHH-HHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCSC--B-CSHH-HHHHHH
T ss_pred ECCCchhhh--hhHhHH-HHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHHHhhcC--C-cccH-HHHHHH
Confidence 999983211 000010 01111 2689999999999865 34 55554 666776665432211 1 2232 222222
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC----CCccccCCC-c-EEEEEeCC-----CccHHHHHHHHHHhCC---
Q psy16848 371 EAIRILSSQEGVELRAKHQDIVAYLRNELIQI----GFPVEHTPS-H-IIPIKIGN-----PALNTKICDMLLKEKG--- 436 (514)
Q Consensus 371 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~-~-~~~i~l~~-----~~~~~~~~~~Ll~~~G--- 436 (514)
..+.. ..+.+.+..++..++.+++.+.+++. ++.+..... + -..+.+.. ..+...+.-.+. ..|
T Consensus 307 ~l~~~-G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~D~tkl~i~~~-~~g~sG 384 (450)
T 3bc8_A 307 TLLSL-GCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLF-TRQVSG 384 (450)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHH-HTTCCS
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccccccCCCceeEEEec-CCCCcc
Confidence 22222 34455566666677777888777654 555543221 1 11232321 234556666664 444
Q ss_pred eEEe--------------cccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848 437 HYVQ--------------PINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481 (514)
Q Consensus 437 I~v~--------------~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~ 481 (514)
..+. .........+...+-+.++..++++|+++++++|+++.++.
T Consensus 385 ~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~ 443 (450)
T 3bc8_A 385 ARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIV 443 (450)
T ss_dssp CEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ceeeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 3332 00000111235678888888999999999999999987665
No 237
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=94.39 E-value=0.19 Score=49.88 Aligned_cols=97 Identities=12% Similarity=0.195 Sum_probs=68.1
Q ss_pred CCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEe
Q psy16848 74 QKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAF 153 (514)
Q Consensus 74 ~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~ 153 (514)
+.+..+++..+.++.......+.. +..........+..+..++++|+++|++.+. .+.+.+++
T Consensus 123 ~~~~vi~~~~~yhg~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~----~~~~~v~~ 185 (395)
T 3nx3_A 123 KGGQFIAFKHSFHGRTLGALSLTA-------------NEKYQKPFKPLISGVKFAKYNDISSVEKLVN----EKTCAIIL 185 (395)
T ss_dssp TTCEEEEETTCCCCSSHHHHTTCC-------------CHHHHGGGCSCCSCEEEECTTCHHHHHTTCC----TTEEEEEE
T ss_pred CCCEEEEEcCCcCCCCHHHHhhcC-------------CcccccccCCCCCCcEEeCCCCHHHHHHhcc----CCeEEEEE
Confidence 355666666666665433323221 1122223334455677778889999988774 45678889
Q ss_pred eccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848 154 ETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 154 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
+..++.+|...| +.++.++++++|..+.+|+.|.
T Consensus 186 ~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~ 223 (395)
T 3nx3_A 186 ESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQC 223 (395)
T ss_dssp ESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred eCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 999989999988 8999999999999999999876
No 238
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=93.04 E-value=0.6 Score=47.75 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=47.6
Q ss_pred hHHHHHHHHhcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848 133 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 133 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
.++|++.+.+....+.+.++++.++..+|.+.| +.++.++|+++|+.+.+|+.|.
T Consensus 207 ~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~ 265 (476)
T 3i5t_A 207 VQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVT 265 (476)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred HHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 678898888655456789999999999998777 8899999999999999999886
No 239
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=93.01 E-value=0.68 Score=47.03 Aligned_cols=98 Identities=21% Similarity=0.233 Sum_probs=70.0
Q ss_pred HHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCC
Q psy16848 69 VAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP 148 (514)
Q Consensus 69 la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~ 148 (514)
...+.|.++.+.+..+.++......+... +. ........++.+|.+.+++.+.+.... .
T Consensus 163 Ar~~tgr~~ii~~~~~yHG~t~~~~~~~~--~~------------------~~~~~~~~~p~nd~~~l~~~l~~~~~~-i 221 (454)
T 4ao9_A 163 ALHFTGRRKIVVFSGGYHGGVLGFGARPS--PT------------------TVPFDFLVLPYNDAQTARAQIERHGPE-I 221 (454)
T ss_dssp HHHHHTCCEEEEETTCBCSTTCBBSSSBC--TT------------------SCCSEEEEECTTCHHHHHHHHHHTGGG-E
T ss_pred HHhcccCCeEEEEeCCcCCcccccccccc--Cc------------------cCCCCcccCCCchHHHHHHHHhhcCCc-e
Confidence 33445788888888888874333222211 11 112234556788999999999886543 4
Q ss_pred cEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848 149 KLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 149 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
..|+++.+....|.+.| ++.++++|+++|+.+.+|+.+.
T Consensus 222 AavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t 264 (454)
T 4ao9_A 222 AVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT 264 (454)
T ss_dssp EEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG
T ss_pred EEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc
Confidence 56778889888898888 8889999999999999999886
No 240
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=92.76 E-value=0.74 Score=47.02 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=48.1
Q ss_pred hHHHHHHHHhcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848 133 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 133 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
.++|++.+.+....+.+.++++.++..+|.+.| +.+++++++++|+.+.+|+.+.
T Consensus 209 ~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~ 267 (472)
T 3hmu_A 209 ARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVIC 267 (472)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc
Confidence 678888887655556789999999999999998 8999999999999999999886
No 241
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=92.67 E-value=0.81 Score=46.44 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=47.9
Q ss_pred hHHHHHHHHhcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848 133 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 133 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
.++|++.+.+....+++.++++.+..++|.+.| +.++.++++++|..+.+|+.+.
T Consensus 205 ~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~ 263 (459)
T 4a6r_A 205 ARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVIC 263 (459)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred HHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 688888887655456788999999999999888 8999999999999999999886
No 242
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=92.54 E-value=0.88 Score=46.16 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=47.3
Q ss_pred hHHHHHHHHhcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848 133 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 133 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
.++|++.+.+....+.+.++++.....+|.+.+ +.++.++++++|+.+.+|+.+.
T Consensus 207 ~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~ 265 (460)
T 3gju_A 207 ADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVT 265 (460)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred HHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 588888887655456788999999988898777 8889999999999999999887
No 243
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=92.09 E-value=0.64 Score=46.28 Aligned_cols=56 Identities=21% Similarity=0.372 Sum_probs=47.4
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
|+++|++.+.+ +++++++......+|.+.|+.++.++++++|..+.+|+.|+.|..
T Consensus 152 d~~~l~~~i~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~ 207 (423)
T 3lvm_A 152 DLKELEAAMRD----DTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKL 207 (423)
T ss_dssp CHHHHHHHCCT----TEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTS
T ss_pred CHHHHHHhcCC----CcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCC
Confidence 78888887753 568888888777789999999999999999999999999876543
No 244
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=91.70 E-value=0.72 Score=45.62 Aligned_cols=62 Identities=26% Similarity=0.314 Sum_probs=50.4
Q ss_pred CCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccC----CccchhHHhhhhhhcCceEEeecccc
Q psy16848 122 SAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG----AICPLKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 122 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
...+..++.+|+++|++.+. .++++++++.++++.| +..+..++.++++++|..+.+|+.|+
T Consensus 162 ~~~~~~~~~~d~~~l~~~l~----~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~ 227 (406)
T 4adb_A 162 PADIRHAAYNDINSASALID----DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQT 227 (406)
T ss_dssp CSSEEEECTTCHHHHHTTCS----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred CCCceEeCCCcHHHHHHHhc----CCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 45566677778888887764 4578888887777777 66789999999999999999999986
No 245
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=91.38 E-value=0.68 Score=46.78 Aligned_cols=56 Identities=25% Similarity=0.304 Sum_probs=47.2
Q ss_pred CChHHHHHHHHhcccCCCcEEEeeccc-cccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848 131 NDVNHLTQVLENMDVKIPKLVAFETVH-SMTGAICP----LKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 131 ~d~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
+|.++|++.|.+. ..+.+.|+++.++ ..+|...| +.++.++++++|..+.+|+.|.
T Consensus 195 ~d~~~le~~l~~~-~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~ 255 (448)
T 3dod_A 195 QCLRELAQLLEEH-HEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVAT 255 (448)
T ss_dssp HHHHHHHHHHHHH-GGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred HHHHHHHHHHHhC-CCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEecccc
Confidence 4688999998743 2346788999999 88898887 8999999999999999999986
No 246
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=90.70 E-value=0.18 Score=50.02 Aligned_cols=55 Identities=25% Similarity=0.311 Sum_probs=46.2
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL 190 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 190 (514)
|+++|++.+. .+++++++......+|.+.+..++.++++++|..+.+|+.|+.|.
T Consensus 148 d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~ 202 (400)
T 3vax_A 148 SVEGVMERLR----PDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGK 202 (400)
T ss_dssp CHHHHHTTCC----TTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTT
T ss_pred CHHHHHHhcC----CCceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCC
Confidence 6777776664 356888888877788999999999999999999999999987654
No 247
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=90.58 E-value=0.22 Score=48.70 Aligned_cols=54 Identities=30% Similarity=0.427 Sum_probs=46.0
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL 190 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 190 (514)
|+++|++.+. .+++++++......+|.+.|..++.++++++|. +.+|+.|+.|.
T Consensus 127 d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~ 180 (382)
T 4hvk_A 127 DVSFIDQKLR----DDTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQ 180 (382)
T ss_dssp CHHHHHHHCC----TTEEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTT
T ss_pred CHHHHHHHhc----cCceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCC
Confidence 7888887774 356788888888788999999999999999999 99999887654
No 248
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=90.51 E-value=1.5 Score=44.13 Aligned_cols=54 Identities=24% Similarity=0.342 Sum_probs=46.1
Q ss_pred hHHHHHHHHhcccCCCcEEEeecc-ccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848 133 VNHLTQVLENMDVKIPKLVAFETV-HSMTGAICP----LKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 133 ~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
.++|++.+.+....+.+.++++.. +. +|...| +.++.++++++|..+.+|+.|.
T Consensus 201 ~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~ 259 (452)
T 3n5m_A 201 VKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVIC 259 (452)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTT
T ss_pred HHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchh
Confidence 889999997444455678999998 68 998887 8889999999999999999886
No 249
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=90.38 E-value=0.42 Score=47.10 Aligned_cols=57 Identities=23% Similarity=0.353 Sum_probs=48.6
Q ss_pred CChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848 131 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189 (514)
Q Consensus 131 ~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (514)
.|++++++.+.+. .++++|++......+|.+.|..++.++++++|..+.+|+.|+.|
T Consensus 120 ~d~~~l~~~l~~~--~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g 176 (392)
T 2z9v_A 120 IDPQAVADMLKAH--PEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFG 176 (392)
T ss_dssp CCHHHHHHHHHHC--TTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBT
T ss_pred CCHHHHHHHHhcC--CCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccC
Confidence 3889999998752 35778888877777899999999999999999999999998754
No 250
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=89.55 E-value=0.32 Score=47.64 Aligned_cols=54 Identities=20% Similarity=0.458 Sum_probs=45.6
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcC--ceEEeecccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHG--ALTFVDEVHAVG 189 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g 189 (514)
|+++|++.+.. +++++++......+|.+.|..++.++++++| ..+.+|+.|+.|
T Consensus 128 d~~~l~~~i~~----~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~ 183 (384)
T 1eg5_A 128 KLEELEKLVDE----DTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIG 183 (384)
T ss_dssp CHHHHHHHCCT----TEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTT
T ss_pred CHHHHHHHhCC----CCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcC
Confidence 78888887753 5678888776667899999999999999999 999999998754
No 251
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=88.92 E-value=0.42 Score=47.21 Aligned_cols=54 Identities=31% Similarity=0.527 Sum_probs=46.7
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (514)
|+++|++.+.. ++++|+++.....+|.+.|..++.++++++|..+.+|+.|+.|
T Consensus 153 d~~~l~~~l~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g 206 (406)
T 1kmj_A 153 QLETLPTLFDE----KTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVM 206 (406)
T ss_dssp CGGGHHHHCCT----TEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred CHHHHHHHhcc----CCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcC
Confidence 78888887742 5688888888778899999999999999999999999998865
No 252
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=87.33 E-value=1.7 Score=44.01 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=45.4
Q ss_pred CChHHHHHHHHhcccCCCcEEEeec-cccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848 131 NDVNHLTQVLENMDVKIPKLVAFET-VHSMTGAICP----LKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 131 ~d~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
+|.++|++.|.+.. .+.+.++++. ....+|.+.| +.++.++++++|+.+.+|+.+.
T Consensus 218 ~d~~~le~~l~~~~-~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~ 278 (457)
T 3tfu_A 218 AYSAAFEAQLAQHA-GELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIAT 278 (457)
T ss_dssp HHHHHHHHHHHHHG-GGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred HHHHHHHHHHHhCC-CCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCcc
Confidence 47889999997643 3567888888 6667787776 8899999999999999999864
No 253
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=87.04 E-value=0.54 Score=46.70 Aligned_cols=55 Identities=27% Similarity=0.502 Sum_probs=46.3
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL 190 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 190 (514)
|+++|++.+.. ++++|++......+|.+.|..++.++++++|..+.+|+.|+.|.
T Consensus 158 d~~~l~~~l~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~ 212 (420)
T 1t3i_A 158 DLEHFKTLLSE----KTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPH 212 (420)
T ss_dssp CHHHHHHHCCT----TEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred CHHHHHHhhCC----CceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCC
Confidence 78888887743 56788887776678999999999999999999999999988653
No 254
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=86.91 E-value=0.55 Score=45.95 Aligned_cols=53 Identities=32% Similarity=0.489 Sum_probs=45.2
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (514)
|+++|++.+.. ++++|++......+|.+.|..++.++++++|.. .+|+.|+.|
T Consensus 127 d~~~l~~~i~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g 179 (382)
T 4eb5_A 127 DVSFIDQKLRD----DTILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVG 179 (382)
T ss_dssp CHHHHHHHCCT----TEEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBT
T ss_pred CHHHHHHHhcC----CCeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcC
Confidence 78888887753 467888887777889999999999999999999 999998854
No 255
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=86.62 E-value=0.46 Score=47.99 Aligned_cols=69 Identities=12% Similarity=0.133 Sum_probs=55.2
Q ss_pred hcCCCCeeeccC-----CChHHHHHHHHhcccCCCcEEEeec----cccccCCccchhHHhhhhhh--cCceEEeecccc
Q psy16848 119 RNSSAPKIIYRH-----NDVNHLTQVLENMDVKIPKLVAFET----VHSMTGAICPLKELCEVSHQ--HGALTFVDEVHA 187 (514)
Q Consensus 119 ~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 187 (514)
+..|.+++.++. .|++++++.+. .++++|+++. .....++..+..++.+++++ +|+.+.+|++++
T Consensus 136 ~~~G~~~~~v~~~~~~~~d~e~l~~~l~----~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~ 211 (431)
T 3ht4_A 136 KEYNIGYNAVPLTEGGLVDFEAVAAAIH----SNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYG 211 (431)
T ss_dssp GGGTCEEEECCBCTTSSBCHHHHHHHCC----TTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTC
T ss_pred HHcCCEEEEeCCCCCCCcCHHHHHhhcC----CCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCCh
Confidence 445666666665 38888888775 3578888887 56678999999999999999 999999999988
Q ss_pred cccc
Q psy16848 188 VGLY 191 (514)
Q Consensus 188 ~g~~ 191 (514)
.+..
T Consensus 212 ~~~~ 215 (431)
T 3ht4_A 212 EFIE 215 (431)
T ss_dssp TTSS
T ss_pred hhcc
Confidence 7764
No 256
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=86.24 E-value=0.68 Score=45.82 Aligned_cols=51 Identities=59% Similarity=1.121 Sum_probs=45.0
Q ss_pred CCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCc
Q psy16848 147 IPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAG 197 (514)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 197 (514)
++++|++++....+|.+.|..++.++++++|+.+.+|++|+.|..|+.|.|
T Consensus 178 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~ 228 (401)
T 2bwn_A 178 APKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAG 228 (401)
T ss_dssp SCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCC
T ss_pred CceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCce
Confidence 357888888888889999999999999999999999999999988766655
No 257
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=84.63 E-value=4.9 Score=40.42 Aligned_cols=55 Identities=20% Similarity=0.292 Sum_probs=43.3
Q ss_pred hHHHHHHHHhcc-cCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848 133 VNHLTQVLENMD-VKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 133 ~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
.+.+++.+.+.. ......++++.+..+.|.+.| +.++.++++++|..+.+|+.+.
T Consensus 212 ~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~ 271 (451)
T 3oks_A 212 AKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQT 271 (451)
T ss_dssp HHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred HHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 344445555432 245678899999998898888 8999999999999999999886
No 258
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=84.54 E-value=0.25 Score=49.72 Aligned_cols=50 Identities=50% Similarity=0.895 Sum_probs=44.2
Q ss_pred CcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCc
Q psy16848 148 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAG 197 (514)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 197 (514)
+++|++++.+..+|.+.|+.++.++++++|+.+.+|+.|+.|..+..+.+
T Consensus 195 ~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~ 244 (427)
T 2w8t_A 195 AKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRG 244 (427)
T ss_dssp CEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC
T ss_pred CeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCc
Confidence 36788889998999999999999999999999999999999888765554
No 259
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=82.28 E-value=1.1 Score=45.13 Aligned_cols=57 Identities=11% Similarity=0.052 Sum_probs=46.1
Q ss_pred CChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccc
Q psy16848 131 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 131 ~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
.|++.|++.|.+.....+.+|+..-.|..++.+++..++.++++++|..+.||.+|.
T Consensus 182 id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G 238 (450)
T 3bc8_A 182 TDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYG 238 (450)
T ss_dssp CCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTT
T ss_pred cCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCc
Confidence 389999999998764445555555555556789999999999999999999998765
No 260
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=82.13 E-value=1.9 Score=41.61 Aligned_cols=46 Identities=7% Similarity=-0.059 Sum_probs=33.9
Q ss_pred ceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEecC
Q psy16848 197 GIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYRH 242 (514)
Q Consensus 197 g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~~ 242 (514)
.++..+|+++++..++..+.++ +++++. .+...+...|++++.++.
T Consensus 70 ~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~ 121 (354)
T 3ly1_A 70 SILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKM 121 (354)
T ss_dssp GEEEESHHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECC
T ss_pred HEEEeCChHHHHHHHHHHHhCCCCeEEECCCCchHHHHHHHHcCCEEEEecC
Confidence 4566778999999999999887 566654 445666777877776663
No 261
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=82.01 E-value=1.1 Score=44.86 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=46.5
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
|.++|++.+.+....+.++++++.+...+|...| +.++.++++++|..+.+|+.|+
T Consensus 188 d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~ 247 (433)
T 1zod_A 188 ELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQT 247 (433)
T ss_dssp HHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTT
T ss_pred HHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc
Confidence 4788888887653345678888888777898777 8899999999999999999987
No 262
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=81.59 E-value=1.3 Score=44.78 Aligned_cols=56 Identities=11% Similarity=0.053 Sum_probs=43.5
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
|++.+++.|.++.......|.....|..++.+.+..++.++++++|..++||++|.
T Consensus 201 d~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhG 256 (501)
T 3hl2_A 201 DLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYG 256 (501)
T ss_dssp CHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTC
T ss_pred CHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcch
Confidence 89999999999853433444444334445678999999999999999999998775
No 263
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=77.69 E-value=1.6 Score=41.99 Aligned_cols=53 Identities=17% Similarity=0.303 Sum_probs=43.0
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhc-CceEEeeccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH-GALTFVDEVHAVGL 190 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~ 190 (514)
|+++++ ...+++++++......+|.+.|..++.++++++ |..+.+|..|+.|.
T Consensus 121 d~~~l~------~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~ 174 (362)
T 3ffr_A 121 YPADIT------VPADAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPY 174 (362)
T ss_dssp CGGGCC------CCTTCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTS
T ss_pred CHHHHh------ccCCccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCC
Confidence 555555 234678888887766789999999999999999 99999999887654
No 264
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=76.75 E-value=12 Score=37.53 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=36.9
Q ss_pred CCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848 146 KIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
.....++++.+..+.|.+.| +.++.++++++|..+.+|+.+.
T Consensus 224 ~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~ 269 (453)
T 4ffc_A 224 QSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQT 269 (453)
T ss_dssp GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTT
T ss_pred CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCcc
Confidence 34678889999988888888 8889999999999999999885
No 265
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=76.37 E-value=2.1 Score=42.37 Aligned_cols=47 Identities=38% Similarity=0.708 Sum_probs=39.7
Q ss_pred EEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCc
Q psy16848 151 VAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAG 197 (514)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 197 (514)
++++..+..+|.+.|+.++.++++++|+.+.+|+.|+.|..|..+.+
T Consensus 190 vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~ 236 (409)
T 3kki_A 190 IVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAG 236 (409)
T ss_dssp EEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCC
T ss_pred EEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCc
Confidence 44555666789999999999999999999999999998888776655
No 266
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=76.23 E-value=6.3 Score=38.09 Aligned_cols=54 Identities=11% Similarity=-0.018 Sum_probs=43.2
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (514)
|++++++.+ ..+++.+++...-..+|.+.|..++.++++++|..+.+|+.++.|
T Consensus 133 d~~~l~~~~----~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~ 186 (376)
T 3f0h_A 133 TKEKLYEYD----NQNFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFL 186 (376)
T ss_dssp CHHHHHTTT----TSCCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred CHHHHHHhh----ccCceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCcccc
Confidence 677776643 346778887765567799999999999999999999999887754
No 267
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=75.64 E-value=1.5 Score=42.16 Aligned_cols=44 Identities=18% Similarity=0.110 Sum_probs=38.3
Q ss_pred CCCcEEEeeccccccCCccchhHHhhhhhhc--CceEEeecccccc
Q psy16848 146 KIPKLVAFETVHSMTGAICPLKELCEVSHQH--GALTFVDEVHAVG 189 (514)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g 189 (514)
.+++++++......+|.+.|..++.++++++ |..+.+|+.|+.|
T Consensus 120 ~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~ 165 (352)
T 1iug_A 120 EGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLL 165 (352)
T ss_dssp SSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBT
T ss_pred cCCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCcccc
Confidence 3567888887777789999999999999999 9999999998754
No 268
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=74.69 E-value=17 Score=35.35 Aligned_cols=56 Identities=20% Similarity=0.289 Sum_probs=42.9
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccc---hhHHhhhhhhcCceEEeecccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
|+++|++.+.+ +++++++......+|.+.| ..++.++++++|..+.+|+.++.+..
T Consensus 163 d~~~l~~~l~~----~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~ 221 (389)
T 1o4s_A 163 SLEEVEGLLVG----KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVY 221 (389)
T ss_dssp CHHHHHHTCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBC
T ss_pred CHHHHHHhccc----CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence 67888777643 4677777655555688877 78888999999999999999986554
No 269
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=74.44 E-value=2.3 Score=42.33 Aligned_cols=86 Identities=20% Similarity=0.276 Sum_probs=67.8
Q ss_pred CCceEEecCccchhhhhhhh----cCCCCeeeccC------CChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848 100 PGLHYISDAGNHASMIQGIR----NSSAPKIIYRH------NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL 169 (514)
Q Consensus 100 ~gd~v~~~~~~h~~~~~~~~----~~~~~~~~~~~------~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
..+.|+++..+|.++..+++ ..|.+++.++. .|+++|++.+. .+++++++......+|.+.|..++
T Consensus 122 ~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~~~~i 197 (432)
T 3a9z_A 122 TRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVR----PTTCLVTIMLANNETGVIMPISEI 197 (432)
T ss_dssp CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCC----TTEEEEECCSBCTTTCBBCCHHHH
T ss_pred cCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhcc----CCceEEEEECcccCcccccCHHHH
Confidence 34789999999999976654 35788777664 25677766553 356788888777778999999999
Q ss_pred hhhhhhcC----------ceEEeecccccc
Q psy16848 170 CEVSHQHG----------ALTFVDEVHAVG 189 (514)
Q Consensus 170 ~~~~~~~~----------~~~~~~~~~~~g 189 (514)
.++++++| ..+.+|+.++.|
T Consensus 198 ~~l~~~~~~~~~~~~~~~~~livDea~~~~ 227 (432)
T 3a9z_A 198 SRRIKALNQIRAASGLPRVLVHTDAAQALG 227 (432)
T ss_dssp HHHHHHHHHHHHHHTCCCCEEEEECTTTTT
T ss_pred HHHHHhcCcccccccCCceEEEEEchhhhC
Confidence 99999999 999999998764
No 270
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=73.55 E-value=6.4 Score=37.88 Aligned_cols=75 Identities=7% Similarity=0.032 Sum_probs=48.1
Q ss_pred ceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCC
Q psy16848 197 GIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHS 270 (514)
Q Consensus 197 g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~n 270 (514)
.+...+|+++++..++..+.++ +++++. .+...+...|++++.++.+
T Consensus 86 ~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~--------------------------- 138 (363)
T 3ffh_A 86 ELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLL--------------------------- 138 (363)
T ss_dssp GEEEESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECC---------------------------
T ss_pred hEEEeCCHHHHHHHHHHHHccCCCEEEEcCCChHHHHHHHHHcCCEEEEecCC---------------------------
Confidence 4556778999999999999876 666654 4455566677777666531
Q ss_pred CCccccCHHHHHHHHHHcCCEEEEecccc
Q psy16848 271 MTGAICPLKELCEVSHQHGALTFVDEVHA 299 (514)
Q Consensus 271 ptG~~~~l~~l~~l~~~~gv~li~Dea~~ 299 (514)
+ +..++++++.+.+++.-..+++...+.
T Consensus 139 ~-~~~~d~~~l~~~i~~~~~~v~~~~p~n 166 (363)
T 3ffh_A 139 Q-DGEHDLEGMLNAIDEKTTIVWICNPNN 166 (363)
T ss_dssp T-TSCCCHHHHHHHCCTTEEEEEEESSCT
T ss_pred C-CCCcCHHHHHHhcccCCCEEEEeCCCC
Confidence 1 123567787777655434455545543
No 271
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=72.28 E-value=4.3 Score=39.45 Aligned_cols=55 Identities=24% Similarity=0.301 Sum_probs=44.8
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhh----hcCceEEeeccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSH----QHGALTFVDEVHAVGL 190 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~ 190 (514)
|+++|++.+. .++++|++......+|.+.|..++.++++ ++|..+.+|+.|+.|.
T Consensus 143 d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~ 201 (390)
T 1elu_A 143 AAAVLANHLG----PKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGS 201 (390)
T ss_dssp HHHHHHTTCC----TTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTT
T ss_pred hHHHHHHhcC----CCceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCC
Confidence 5666666553 35688888877777899999999999999 9999999999998653
No 272
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=72.25 E-value=7.8 Score=34.15 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=30.5
Q ss_pred ceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEE
Q psy16848 260 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFV 294 (514)
Q Consensus 260 ~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~ 294 (514)
+.+++.+-..|..|....++++.+++++||+.++.
T Consensus 160 Pa~vicEi~~~~dG~mar~~~l~~fA~~h~l~iit 194 (204)
T 1tks_A 160 PAGVICELVRDEDGLMMRLDDCIQFGKKHGIKIIN 194 (204)
T ss_dssp SBEEEEEBBCTTTCCBCBHHHHHHHHHHHTCCEEE
T ss_pred ceEEEEEEeECCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 56777777768899999999999999999998874
No 273
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=71.84 E-value=25 Score=33.88 Aligned_cols=56 Identities=23% Similarity=0.397 Sum_probs=42.9
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccc---hhHHhhhhhhcCceEEeecccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
|.++|++.+.. +++.+++......+|.+.| ..++.++++++|..+.+|+.|+.+..
T Consensus 152 d~~~l~~~l~~----~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~ 210 (388)
T 1j32_A 152 SPEQIRQAITP----KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILY 210 (388)
T ss_dssp CHHHHHHHCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBC
T ss_pred CHHHHHHhcCc----CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhccc
Confidence 78888887753 4677777665555687755 78888899999999999999886554
No 274
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=71.31 E-value=4 Score=41.19 Aligned_cols=59 Identities=7% Similarity=0.069 Sum_probs=43.7
Q ss_pred CChHHHHHHHHh-cccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848 131 NDVNHLTQVLEN-MDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189 (514)
Q Consensus 131 ~d~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (514)
.|+++|++.|.+ ....++.+++....-..+|.+.|..++.++++++|+.+.+|++|+..
T Consensus 214 ~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~ 273 (456)
T 2z67_A 214 VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQ 273 (456)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTT
T ss_pred cCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHH
Confidence 389999999943 21234555544443345799999999999999999999999877643
No 275
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=70.09 E-value=29 Score=33.43 Aligned_cols=56 Identities=20% Similarity=0.279 Sum_probs=42.8
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccc---hhHHhhhhhhcCceEEeecccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
|.++|++.+. .+++++++......+|...| ..++.++++++|..+.+|+.+....+
T Consensus 152 d~~~l~~~l~----~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~ 210 (386)
T 1u08_A 152 DWQEFAALLS----ERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINF 210 (386)
T ss_dssp CHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBC
T ss_pred CHHHHHHhhc----ccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEcccccccc
Confidence 7888888773 35677777765556687776 47788889999999999999876443
No 276
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=69.42 E-value=27 Score=34.13 Aligned_cols=56 Identities=13% Similarity=0.045 Sum_probs=42.6
Q ss_pred ChHHHHHHHHhcccCCCc-EEEeeccc-cccCCccchhHHhhhhh---------hcCceEEeecccc
Q psy16848 132 DVNHLTQVLENMDVKIPK-LVAFETVH-SMTGAICPLKELCEVSH---------QHGALTFVDEVHA 187 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 187 (514)
|+++|++.+.+....+++ ++++.+.+ ..+|...+..++.++++ ++|..+.+|+.+.
T Consensus 162 d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~ 228 (413)
T 3t18_A 162 NIDVYKEAIDEGIRDSDRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYL 228 (413)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTG
T ss_pred CHHHHHHHHHHHhhcCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEecccc
Confidence 789999988764333455 67777653 46799999888887766 8999999999874
No 277
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=69.33 E-value=27 Score=34.12 Aligned_cols=136 Identities=7% Similarity=-0.075 Sum_probs=74.4
Q ss_pred CChhHHHHHHHHHHHh-CCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEec-cccccccchhhccccCCCceEEec
Q psy16848 30 VPKGGRKCLGEALEKF-GTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTS-CYVANDSTLFTLGKMIPGLHYISD 107 (514)
Q Consensus 30 ~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~s-Gt~a~~~~l~~l~~~~~gd~v~~~ 107 (514)
+.+++.+++.+.+... +... .....-+....+.+.-.+..+++..+.+++.+ +......++... ....+.++
T Consensus 81 g~~~lr~~ia~~~~~~~~~~~--~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~----g~~~~~v~ 154 (418)
T 3rq1_A 81 GIPDFLCAAEKECFGNFRPEG--HIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDT----GRTLVTYS 154 (418)
T ss_dssp CCHHHHHHHHHHHHGGGCCSS--EEEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHHHHHHT----TCEEEEEC
T ss_pred ChHHHHHHHHHHHhcccCccc--cccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHHHHHHHc----CCEEEEEe
Confidence 4788898888877542 2110 00111112233445444555555444455544 433332222211 23333333
Q ss_pred CccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCc-EEEeecc-ccccCCccchhHHhhhhh---------hc
Q psy16848 108 AGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPK-LVAFETV-HSMTGAICPLKELCEVSH---------QH 176 (514)
Q Consensus 108 ~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~ 176 (514)
-.... -..|++++++.+.+....+++ ++++... ..-+|...+..++.++++ ++
T Consensus 155 ~~~~~----------------~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~ 218 (418)
T 3rq1_A 155 LFDEH----------------NNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRN 218 (418)
T ss_dssp SBCTT----------------SSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSC
T ss_pred eeCCC----------------CCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCC
Confidence 11000 012789999888764333344 6666655 456788888888877766 89
Q ss_pred CceEEeecccc
Q psy16848 177 GALTFVDEVHA 187 (514)
Q Consensus 177 ~~~~~~~~~~~ 187 (514)
|..+.+|+.|.
T Consensus 219 ~~~li~De~y~ 229 (418)
T 3rq1_A 219 NVIIGIDVAYL 229 (418)
T ss_dssp EEEEEEECTTG
T ss_pred CeEEEEecccc
Confidence 99999999874
No 278
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=69.22 E-value=31 Score=33.86 Aligned_cols=57 Identities=21% Similarity=0.334 Sum_probs=43.5
Q ss_pred CChHHHHHHHHhcccCCCcEEEeeccccccCCccc---hhHHhhhhhhcCceEEeecccccccc
Q psy16848 131 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 131 ~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
.|.++|++.+. .+++++++......+|.+.| ..++.++++++|..+.+|+.+....+
T Consensus 170 ~d~~~l~~~l~----~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~ 229 (429)
T 1yiz_A 170 LDNNELEALFN----EKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVF 229 (429)
T ss_dssp CCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBC
T ss_pred cCHHHHHHHhc----cCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEecccccccc
Confidence 37888888774 35677777765556688876 77888889999999999999875443
No 279
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=68.45 E-value=8.1 Score=34.66 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=28.0
Q ss_pred ceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEE
Q psy16848 260 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFV 294 (514)
Q Consensus 260 ~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~ 294 (514)
+..++.+-. |..|....++++.+++++||+.++.
T Consensus 179 Pa~VicEi~-~ddG~mar~~~l~~fA~~h~l~~it 212 (227)
T 1snn_A 179 PITTICEMM-GDDGNAMSKNETKRYAEKHNLIYLS 212 (227)
T ss_dssp SEEEEEEEB-CTTSSBCCHHHHHHHHHHHTCCEEE
T ss_pred ceEEEEEEe-CCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 455665555 6779999999999999999999884
No 280
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=68.17 E-value=4.8 Score=38.52 Aligned_cols=57 Identities=25% Similarity=0.550 Sum_probs=42.2
Q ss_pred ChHHHHHHHHhcc--cCCCcEEEeecccccc-CCccch---hHHhhhhhhcCceEEeeccccc
Q psy16848 132 DVNHLTQVLENMD--VKIPKLVAFETVHSMT-GAICPL---KELCEVSHQHGALTFVDEVHAV 188 (514)
Q Consensus 132 d~~~l~~~l~~~~--~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 188 (514)
|++++++.+.+.. ..++++|++++....+ |.+.|. .++.++++++|..+.+|++|..
T Consensus 115 d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~ 177 (347)
T 1jg8_A 115 DPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIF 177 (347)
T ss_dssp CHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHH
T ss_pred CHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhh
Confidence 7888888775421 1256788887777555 888776 5677888999999999997754
No 281
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=66.25 E-value=8.8 Score=37.46 Aligned_cols=46 Identities=20% Similarity=0.094 Sum_probs=34.6
Q ss_pred ceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEecC
Q psy16848 197 GIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYRH 242 (514)
Q Consensus 197 g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~~ 242 (514)
.++...|+++++..++.++.++ +++++. .+...+...|++++.++.
T Consensus 105 ~v~~~~ggt~a~~~~~~~~~~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~ 156 (398)
T 3a2b_A 105 AAILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGH 156 (398)
T ss_dssp EEEEESSHHHHHHHHHHHSSCTTCEEEEETTCCHHHHHHHHHSSSEEEEECT
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHcCCceEEeCC
Confidence 4667788999999999999887 566655 445666777888776664
No 282
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=66.11 E-value=13 Score=35.74 Aligned_cols=53 Identities=13% Similarity=0.200 Sum_probs=40.6
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
|++++++.+. .+++.|+..+ .+|.+.+..++.++++++|..+.+|++|+.|..
T Consensus 112 d~~~l~~~i~----~~~~~v~~~~---~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~ 164 (367)
T 3nyt_A 112 DPQLLEAAIT----PRTKAIIPVS---LYGQCADFDAINAIASKYGIPVIEDAAQSFGAS 164 (367)
T ss_dssp CGGGTGGGCC----TTEEEECCBC---GGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCE
T ss_pred CHHHHHHhcC----cCCcEEEeeC---CccChhhHHHHHHHHHHcCCEEEEECccccCCe
Confidence 5666665552 3456666433 468999999999999999999999999987754
No 283
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=64.89 E-value=8.9 Score=39.14 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=37.2
Q ss_pred CCceeeecCchhhHHHHHhhcc-CC--ceeeec----chHHHHhhCCCCEEEec
Q psy16848 195 GAGIGERDGQLHNMDIISGTLV-NP--EVAIHA----SMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 195 ~~g~~~~~G~~~~i~~~~~~l~-~~--~v~~~~----~~~~~~~~~g~~~~~v~ 241 (514)
...|+.++|+++++..++..++ ++ +++++. .+...+...|++++.++
T Consensus 157 ~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~ 210 (500)
T 3tcm_A 157 ADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIALHGGALVPYY 210 (500)
T ss_dssp GGGEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTHHHHHHHHTTCEEEEEE
T ss_pred cccEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHHHHHHHcCCEEEEEe
Confidence 3467888999999999999998 66 666665 55677778888887776
No 284
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=64.45 E-value=38 Score=32.63 Aligned_cols=53 Identities=17% Similarity=0.118 Sum_probs=39.0
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccc---hhHHhhhhhhcCceEEeecccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
|++++++. +++.+++.....-+|.+.| ..++.++++++|..+.+|+.++....
T Consensus 153 d~~~l~~~-------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~ 208 (391)
T 3h14_A 153 VPADFAGL-------DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEY 208 (391)
T ss_dssp CHHHHTTS-------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS
T ss_pred CHHHHHhc-------CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhccc
Confidence 56666543 5677777655555687777 67777888999999999999875444
No 285
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=63.29 E-value=15 Score=35.23 Aligned_cols=75 Identities=7% Similarity=0.011 Sum_probs=49.0
Q ss_pred ceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCC
Q psy16848 197 GIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHS 270 (514)
Q Consensus 197 g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~n 270 (514)
.+..++|+++++..++..+.++ +++++. .+...+...|++++.++.+
T Consensus 87 ~i~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~--------------------------- 139 (367)
T 3euc_A 87 EVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLR--------------------------- 139 (367)
T ss_dssp EEEEEEHHHHHHHHHHHHTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEECC---------------------------
T ss_pred eEEEcCCHHHHHHHHHHHHcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCC---------------------------
Confidence 4556678999999999999887 566554 4456666777777766531
Q ss_pred CCccccCHHHHHHHHHHc-CCEEEEecccc
Q psy16848 271 MTGAICPLKELCEVSHQH-GALTFVDEVHA 299 (514)
Q Consensus 271 ptG~~~~l~~l~~l~~~~-gv~li~Dea~~ 299 (514)
+ +..+++++|.+..+++ -..+++-..+.
T Consensus 140 ~-~~~~d~~~l~~~l~~~~~~~v~~~~~~n 168 (367)
T 3euc_A 140 A-DFTLDRGAMLAAMAEHQPAIVYLAYPNN 168 (367)
T ss_dssp T-TSCCCHHHHHHHHHHHCCSEEEEESSCT
T ss_pred C-CCCCCHHHHHHHhhccCCCEEEEcCCCC
Confidence 1 2234678888888773 34444544443
No 286
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=62.94 E-value=8.8 Score=39.18 Aligned_cols=47 Identities=21% Similarity=0.123 Sum_probs=37.0
Q ss_pred CCceeeecCchhhHHHHHhhccCC------ceeeec----chHHHHhhCCCCEEEec
Q psy16848 195 GAGIGERDGQLHNMDIISGTLVNP------EVAIHA----SMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 195 ~~g~~~~~G~~~~i~~~~~~l~~~------~v~~~~----~~~~~~~~~g~~~~~v~ 241 (514)
...|..++|+++++..++..+.++ +++++. .|...+...|++++.++
T Consensus 153 ~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~~~~~~~g~~~v~~~ 209 (498)
T 3ihj_A 153 PDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYY 209 (498)
T ss_dssp GGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHHHHHHHTTCEEEEEE
T ss_pred cccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHHHHHHHcCCEEEEee
Confidence 346788899999999999999986 566654 55667778888877766
No 287
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=62.85 E-value=37 Score=32.80 Aligned_cols=56 Identities=14% Similarity=0.236 Sum_probs=39.4
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH---Hhhhhhh------cCceEEeecccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE---LCEVSHQ------HGALTFVDEVHAVGLY 191 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------~~~~~~~~~~~~~g~~ 191 (514)
|+++|++.+.. +++.+++.....-+|.+.|..+ +.+++++ +|..+.+|+.|.....
T Consensus 161 d~~~l~~~l~~----~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~ 225 (398)
T 3ele_A 161 DFDALEERINA----HTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVY 225 (398)
T ss_dssp CHHHHHHTCCT----TEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBC
T ss_pred CHHHHHHHhCc----CCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEecccccccc
Confidence 77888877642 4677776654445688888544 4577777 8999999999876443
No 288
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=62.36 E-value=25 Score=34.19 Aligned_cols=57 Identities=18% Similarity=0.143 Sum_probs=39.7
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccC---CccchhHHhhhhhhcCceEEeecccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTG---AICPLKELCEVSHQHGALTFVDEVHAVG 189 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (514)
|.+.+++.+.+ ...+++++++...---+| +..+..++.++++++|..+++|+.+...
T Consensus 161 d~~~l~~~l~~-~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~ 220 (401)
T 7aat_A 161 DFTGAMEDISK-IPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGF 220 (401)
T ss_dssp CHHHHHHHHTT-SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTT
T ss_pred CHHHHHHHHHh-CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccc
Confidence 77888888877 334556666544333345 4445677888899999999999987643
No 289
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=62.17 E-value=7.2 Score=38.57 Aligned_cols=64 Identities=16% Similarity=0.160 Sum_probs=50.8
Q ss_pred CCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848 121 SSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189 (514)
Q Consensus 121 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (514)
.|.+++.++. |+++|++.+. .++++|+++.....+|.+.+..++.++++++|..+.+|+.|+.+
T Consensus 119 ~g~~~~~~~~-~~~~l~~~i~----~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~ 182 (412)
T 2cb1_A 119 MGVTVRYVDP-EPEAVREALS----AKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAA 182 (412)
T ss_dssp TTCEEEEECS-SHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTT
T ss_pred cCCEEEEECC-CHHHHHHHhc----cCCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccc
Confidence 3444555544 4777777664 35688888888888899999999999999999999999999876
No 290
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=60.11 E-value=87 Score=30.53 Aligned_cols=66 Identities=27% Similarity=0.359 Sum_probs=56.5
Q ss_pred CCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeeccccccc
Q psy16848 123 APKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGL 190 (514)
Q Consensus 123 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~ 190 (514)
..+..++++|.++|++.+.+.. .+++.++++..+..+|.+.| +.++.++++++|..+.+|+.|. |.
T Consensus 176 ~~~~~~~~~d~~~le~~l~~~~-~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-g~ 245 (427)
T 3fq8_A 176 ANTLTTPYNDLEAVKALFAENP-GEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVIT-GF 245 (427)
T ss_dssp TTEEEEETTCHHHHHHHHHHST-TTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-BT
T ss_pred CceeecCCCCHHHHHHHHHhCC-CCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-cc
Confidence 3466777889999999998753 45789999999999999999 9999999999999999999987 44
No 291
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=59.51 E-value=1.3e+02 Score=30.00 Aligned_cols=168 Identities=14% Similarity=0.088 Sum_probs=107.8
Q ss_pred CCceeeeccc---CCCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC---CCcEEEEeccccc
Q psy16848 16 SNRVTCRLSS---VQYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ---KEAGLVFTSCYVA 87 (514)
Q Consensus 16 ~g~~~~d~~~---~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~i~~~sGt~a 87 (514)
+|+.|+||.+ ...+| ||+|.+++.+|+.++.... ......+...++.+++.+++. .++++|++|||+|
T Consensus 62 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~----~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA 137 (456)
T 4atq_A 62 DGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHTC----FMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEA 137 (456)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCT----TTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHH
T ss_pred CCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccCcc----cCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHH
Confidence 5555666632 22223 8999999999999854321 112234667788899999974 4567889999999
Q ss_pred cccchhhccc-cCCCceEEecCccchhhhhhhhcCCCC-------------eeeccC-----------CChHHHHHHHHh
Q psy16848 88 NDSTLFTLGK-MIPGLHYISDAGNHASMIQGIRNSSAP-------------KIIYRH-----------NDVNHLTQVLEN 142 (514)
Q Consensus 88 ~~~~l~~l~~-~~~gd~v~~~~~~h~~~~~~~~~~~~~-------------~~~~~~-----------~d~~~l~~~l~~ 142 (514)
++.|++.... .++...|..+..+|..+..++...+.. +..++. ++.+.+++.+..
T Consensus 138 ~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 217 (456)
T 4atq_A 138 VENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITM 217 (456)
T ss_dssp HHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHH
Confidence 9999976543 445566777778888777666544321 111111 123334333332
Q ss_pred ----cccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848 143 ----MDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 143 ----~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
........++++-+-...|.+.| ++.++++|+++|+.+.+|+.+.
T Consensus 218 ~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~t 270 (456)
T 4atq_A 218 IEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQS 270 (456)
T ss_dssp HHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTT
T ss_pred HHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEeccccc
Confidence 12233456666766554455544 7789999999999999999764
No 292
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=57.87 E-value=11 Score=36.68 Aligned_cols=53 Identities=26% Similarity=0.429 Sum_probs=40.1
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
|++++++.+. .+++.++.. +.+|.+.+..++.++++++|+.+.+|++++.|..
T Consensus 133 d~~~l~~~~~----~~~~~v~~~---n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~ 185 (391)
T 3dr4_A 133 DAAKLEALIT----PRTKAIMPV---HLYGQICDMDPILEVARRHNLLVIEDAAEAVGAT 185 (391)
T ss_dssp CGGGSGGGCC----TTEEEECCB---CGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCE
T ss_pred CHHHHHHhcC----CCceEEEEE---CCCCChhhHHHHHHHHHHcCCEEEEECcccccce
Confidence 5566655543 245666543 3568899999999999999999999999987754
No 293
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=57.13 E-value=4.6 Score=39.44 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=43.1
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
|++++++.+.+ +++++++.. .+|.+.+..++.++++++|..+.+|+.|+.|..
T Consensus 116 d~~~l~~~l~~----~~~~v~~~~---~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~ 168 (393)
T 1mdo_A 116 TPEHIEAAITP----QTKAIIPVH---YAGAPADLDAIYALGERYGIPVIEDAAHATGTS 168 (393)
T ss_dssp CHHHHHHHCCT----TEEEECCBC---GGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCE
T ss_pred CHHHHHHhcCC----CceEEEEeC---CCCCcCCHHHHHHHHHHcCCeEEEECccccCCe
Confidence 78888887753 456666643 578899999999999999999999999987643
No 294
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=56.17 E-value=12 Score=35.82 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=39.6
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccc-cccCCccchhHH---hhhhhhcCceEEeecccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVH-SMTGAICPLKEL---CEVSHQHGALTFVDEVHAVG 189 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g 189 (514)
|.+++++. ..+++.+++.... +++|.+.+..++ .++++++|..+.+|+.+..+
T Consensus 127 d~~~l~~~-----~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~ 183 (359)
T 3pj0_A 127 TIDDIKSL-----REPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWE 183 (359)
T ss_dssp CHHHHHTC-----SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGG
T ss_pred CHHHHHhc-----cCCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhc
Confidence 67777655 3567888877665 445788887777 88899999999999876543
No 295
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=55.80 E-value=17 Score=34.87 Aligned_cols=45 Identities=9% Similarity=-0.019 Sum_probs=32.6
Q ss_pred ceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEec
Q psy16848 197 GIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 197 g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~ 241 (514)
.+...+|+++++..++..+.++ +++++. ++...+...|++++.++
T Consensus 71 ~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~ 121 (371)
T 2e7j_A 71 VARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVP 121 (371)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEEC
T ss_pred EEEEeCChHHHHHHHHHHHhCCCCEEEEccCcchHHHHHHHHcCCeEEEee
Confidence 4677889999999999999877 666665 33445566676666554
No 296
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=54.98 E-value=15 Score=35.27 Aligned_cols=74 Identities=8% Similarity=0.033 Sum_probs=52.8
Q ss_pred CceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCC
Q psy16848 196 AGIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269 (514)
Q Consensus 196 ~g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~ 269 (514)
..+...+|+++++..++..+.++ +++++. .+...+...|++++.++.+.
T Consensus 82 ~~i~~t~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~------------------------- 136 (377)
T 3fdb_A 82 EWIFPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDATG------------------------- 136 (377)
T ss_dssp GGEEEESCHHHHHHHHHHHHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEECTT-------------------------
T ss_pred HHEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCC-------------------------
Confidence 45788889999999999999887 565554 44556667777777655321
Q ss_pred CCCccccCHHHHHHHHHHcCCEEEEecccc
Q psy16848 270 SMTGAICPLKELCEVSHQHGALTFVDEVHA 299 (514)
Q Consensus 270 nptG~~~~l~~l~~l~~~~gv~li~Dea~~ 299 (514)
+ .+++++.+.++++...+++-..+.
T Consensus 137 ---~--~d~~~l~~~l~~~~~~v~i~~p~n 161 (377)
T 3fdb_A 137 ---G--INLHDVEKGFQAGARSILLCNPYN 161 (377)
T ss_dssp ---S--CCHHHHHHHHHTTCCEEEEESSBT
T ss_pred ---C--CCHHHHHHHhccCCCEEEEeCCCC
Confidence 1 678888888887666666666654
No 297
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=54.90 E-value=15 Score=35.16 Aligned_cols=44 Identities=9% Similarity=-0.052 Sum_probs=31.1
Q ss_pred ceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEe
Q psy16848 197 GIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIY 240 (514)
Q Consensus 197 g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v 240 (514)
.++..+|+++++..++.++.++ +++++. .+...+...|++++.+
T Consensus 84 ~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v 133 (360)
T 3hdo_A 84 WIIMANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTF 133 (360)
T ss_dssp GEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHHTCEEEEE
T ss_pred eEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCChHHHHHHHHHCCCEEEEe
Confidence 4666788999999999999887 566654 3445555666665543
No 298
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=54.79 E-value=12 Score=36.95 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=35.2
Q ss_pred CceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEec
Q psy16848 196 AGIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 196 ~g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~ 241 (514)
..|+.++|++++++.++.+++++ +++++. .+...+...|++++.++
T Consensus 109 ~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 160 (425)
T 2r2n_A 109 MDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPLGCNIINVA 160 (425)
T ss_dssp EEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHGGGTCEEEEEC
T ss_pred CcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeC
Confidence 46888999999999999999987 566665 34555667777776655
No 299
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=54.76 E-value=4.4 Score=39.15 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=40.4
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
|.++|++.+. .+++.+++... +|.+.|..++.++++++|..+.+|++|+.|..
T Consensus 110 d~~~l~~~i~----~~~~~v~~~~~---tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~ 162 (375)
T 2fnu_A 110 DELALEKLIN----ERTKAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSHALGSE 162 (375)
T ss_dssp CGGGSGGGCC----TTEEEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCE
T ss_pred CHHHHHhhcC----cCceEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECccccCCe
Confidence 6666665553 24565555443 79999999999999999999999999987643
No 300
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=54.62 E-value=10 Score=36.92 Aligned_cols=50 Identities=46% Similarity=0.777 Sum_probs=42.0
Q ss_pred CcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCc
Q psy16848 148 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAG 197 (514)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 197 (514)
++++++...+..+|.+.|..++.++++++|..+.+|+.++.|..+..+.+
T Consensus 176 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~ 225 (399)
T 3tqx_A 176 FKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRG 225 (399)
T ss_dssp SEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC
T ss_pred ceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCc
Confidence 46777777777889999999999999999999999999988876655433
No 301
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=54.34 E-value=11 Score=36.48 Aligned_cols=57 Identities=21% Similarity=0.372 Sum_probs=42.3
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccc---hhHHhhhhhhcCceEEeeccccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYG 192 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~ 192 (514)
|+++|++.+.. +++++++.....-+|.+.| ..++.++++++|..+.+|+.|+.+..+
T Consensus 149 d~~~l~~~l~~----~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~ 208 (389)
T 1gd9_A 149 NVDELKKYVTD----KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYD 208 (389)
T ss_dssp CHHHHHHHCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCT
T ss_pred CHHHHHHhcCc----CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccC
Confidence 78888887753 4566666544334577764 788888999999999999999876543
No 302
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=54.27 E-value=4.2 Score=39.41 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=39.5
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL 190 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 190 (514)
|++++++.+.+ +++.++ ..+.+|.+.+..++.++++++|..+.+|+.|+.|.
T Consensus 114 d~~~l~~~~~~----~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~ 165 (374)
T 3uwc_A 114 DPEKIEAAITD----KTKAIM---PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILG 165 (374)
T ss_dssp CGGGTGGGCCT----TEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTC
T ss_pred CHHHHHHhCCC----CceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCc
Confidence 56666555432 445555 33467999999999999999999999999998764
No 303
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=53.81 E-value=5.8 Score=38.65 Aligned_cols=53 Identities=21% Similarity=0.330 Sum_probs=42.1
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
|+++|++.+.. ++++|+ ..+.+|.+.+..++.++++++|..+.+|+.|+.|..
T Consensus 115 d~~~l~~~i~~----~~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~ 167 (388)
T 1b9h_A 115 DPEAVAAAVTP----RTKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGAR 167 (388)
T ss_dssp CHHHHHHHCCT----TEEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCE
T ss_pred CHHHHHHhcCc----CceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCc
Confidence 78888887742 345555 334579999999999999999999999999987653
No 304
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=53.74 E-value=47 Score=32.92 Aligned_cols=56 Identities=21% Similarity=0.333 Sum_probs=39.9
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCcc---chhHHhhhhhhcCceEEeecccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC---PLKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
|.++|++.+. .+++++++.....-+|... ...++.++++++|..+.+|+.+....+
T Consensus 190 d~~~l~~~l~----~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~ 248 (447)
T 3b46_A 190 DFEQFEKAIT----SKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYF 248 (447)
T ss_dssp CHHHHHTTCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBC
T ss_pred CHHHHHHhhc----cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhccc
Confidence 6777777663 3567777664333456664 477788888999999999999876443
No 305
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=53.62 E-value=12 Score=35.86 Aligned_cols=28 Identities=11% Similarity=0.026 Sum_probs=21.8
Q ss_pred ceeeecCchhhHHHHHhhccCC--ceeeec
Q psy16848 197 GIGERDGQLHNMDIISGTLVNP--EVAIHA 224 (514)
Q Consensus 197 g~~~~~G~~~~i~~~~~~l~~~--~v~~~~ 224 (514)
.++..+|+++++..++..++++ +++++.
T Consensus 84 ~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~ 113 (365)
T 3get_A 84 NIIIGAGSDQVIEFAIHSKLNSKNAFLQAG 113 (365)
T ss_dssp GEEEESSHHHHHHHHHHHHCCTTCEEEECS
T ss_pred eEEECCCHHHHHHHHHHHHhCCCCEEEEeC
Confidence 4566778999999999999876 555554
No 306
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=53.62 E-value=9.1 Score=37.40 Aligned_cols=54 Identities=24% Similarity=0.382 Sum_probs=46.5
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (514)
|+++|++.+. .++++|++......+|.+.|..++.++++++|..+.+|+.|+.|
T Consensus 154 d~~~l~~~l~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g 207 (406)
T 3cai_A 154 PTWQWESLIS----KSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAP 207 (406)
T ss_dssp CGGGHHHHCC----TTEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTT
T ss_pred CHHHHHHHhC----CCceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccC
Confidence 7888887774 35688888888778899999999999999999999999998754
No 307
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=53.57 E-value=6.7 Score=38.88 Aligned_cols=53 Identities=23% Similarity=0.369 Sum_probs=41.5
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
|+++|++.+. .++++|++.. .+|.+.+..++.++++++|..+.+|+.|+.|..
T Consensus 127 d~~~l~~~i~----~~~~~v~~~~---~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~ 179 (424)
T 2po3_A 127 DPDQVAAAVT----PRTSAVVGVH---LWGRPCAADQLRKVADEHGLRLYFDAAHALGCA 179 (424)
T ss_dssp CHHHHGGGCC----TTEEEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCE
T ss_pred CHHHHHHhhC----cCCcEEEEEC---CCCCcCCHHHHHHHHHHcCCEEEEECccccCCe
Confidence 6777766553 2456666643 578899999999999999999999999987653
No 308
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=52.54 E-value=17 Score=35.13 Aligned_cols=46 Identities=9% Similarity=0.098 Sum_probs=35.1
Q ss_pred CceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEec
Q psy16848 196 AGIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 196 ~g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~ 241 (514)
..+...+|+++++..++..+.++ +++++. .+...+...|++++.++
T Consensus 86 ~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~ 137 (391)
T 3dzz_A 86 DWCVFASGVVPAISAMVRQFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSD 137 (391)
T ss_dssp GGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCHHHHHHHHHTTCEEEECC
T ss_pred HHEEECCCHHHHHHHHHHHhCCCCCeEEECCCCcHHHHHHHHHcCCEEEEee
Confidence 45788889999999999999887 566654 44566677787777665
No 309
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=52.33 E-value=13 Score=36.02 Aligned_cols=57 Identities=23% Similarity=0.350 Sum_probs=42.5
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccc---hhHHhhhhhhcCceEEeeccccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYG 192 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~ 192 (514)
|+++|++.+. .+++++++......+|.+.| ..++.++++++|..+.+|+.+..+..|
T Consensus 141 d~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g 200 (381)
T 1v2d_A 141 DLSALEKALT----PRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYG 200 (381)
T ss_dssp CHHHHHTTCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSS
T ss_pred CHHHHHHhcC----cCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccC
Confidence 7777776663 35677777655445677766 678888899999999999999866544
No 310
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=52.06 E-value=15 Score=36.82 Aligned_cols=47 Identities=21% Similarity=0.293 Sum_probs=34.8
Q ss_pred CCceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEec
Q psy16848 195 GAGIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 195 ~~g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~ 241 (514)
...|+.++|++++++.++..++++ +++++. .+...+...|++++.++
T Consensus 140 ~~~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 192 (448)
T 3aow_A 140 DNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIP 192 (448)
T ss_dssp TSEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEE
T ss_pred hhhEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEec
Confidence 356888899999999999999987 566654 34555566777766554
No 311
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=51.84 E-value=13 Score=37.17 Aligned_cols=57 Identities=14% Similarity=0.186 Sum_probs=42.8
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccc-cccCCccc---hhHHhhhhhhcCceEEeeccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVH-SMTGAICP---LKELCEVSHQHGALTFVDEVHAV 188 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 188 (514)
|+++|++.+.+....+++.|+++... ++.|.+.+ +.++.++++++|..+.+|..|..
T Consensus 168 d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~ 228 (467)
T 2oqx_A 168 DLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFA 228 (467)
T ss_dssp CHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHH
T ss_pred CHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhh
Confidence 89999999986432356777777654 34466544 67899999999999999977765
No 312
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=51.82 E-value=6.3 Score=38.97 Aligned_cols=52 Identities=15% Similarity=0.298 Sum_probs=41.4
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL 190 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 190 (514)
|++++++.+. .++++|++.+ .+|.+.+..++.++++++|..+.+|+.|+.|.
T Consensus 119 d~~~l~~~i~----~~~~~v~~~~---~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~ 170 (418)
T 2c81_A 119 DPQLIKSAIT----DKTKAIIPVH---LFGSMANMDEINEIAQEHNLFVIEDCAQSHGS 170 (418)
T ss_dssp CHHHHGGGCC----TTEEEECCBC---CTTCCCCHHHHHHHHHHTTCEEEEECTTCTTC
T ss_pred CHHHHHHhhC----CCCeEEEEeC---CcCCcccHHHHHHHHHHCCCEEEEECcccccC
Confidence 6777766654 2456666643 46899999999999999999999999998875
No 313
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=51.75 E-value=9.9 Score=37.30 Aligned_cols=53 Identities=28% Similarity=0.442 Sum_probs=44.4
Q ss_pred hHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848 133 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189 (514)
Q Consensus 133 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (514)
+++|++.+. .++++|++......+|.+.|..++.++++++|..+.+|+.|+.|
T Consensus 155 ~~~l~~~i~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g 207 (416)
T 1qz9_A 155 PEELPQAID----QDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAG 207 (416)
T ss_dssp GGGHHHHCS----TTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred HHHHHHHhC----CCceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEcccccc
Confidence 566776664 35678888888778899999999999999999999999998754
No 314
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=51.51 E-value=48 Score=32.30 Aligned_cols=56 Identities=21% Similarity=0.296 Sum_probs=41.8
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccc---hhHHhhhhhhcCceEEeecccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
|++++++.+. .+++++++......+|.+.| ..++.++++++|..+.+|+.|+...+
T Consensus 163 d~~~l~~~~~----~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~ 221 (422)
T 3fvs_A 163 DPMELAGKFT----SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVY 221 (422)
T ss_dssp CHHHHHTTCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBC
T ss_pred CHHHHHhhcC----CCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhcc
Confidence 6777776654 35677777765556788874 77788889999999999999876443
No 315
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=50.36 E-value=14 Score=35.62 Aligned_cols=45 Identities=40% Similarity=0.670 Sum_probs=37.6
Q ss_pred cEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccccc
Q psy16848 149 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGE 193 (514)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 193 (514)
++++++.....+|.+.|..++.++++++|..+.+|+.|+.|..+.
T Consensus 170 ~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~ 214 (384)
T 1bs0_A 170 QMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGE 214 (384)
T ss_dssp EEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSG
T ss_pred eEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecC
Confidence 456666666667999999999999999999999999998887553
No 316
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=50.04 E-value=12 Score=36.51 Aligned_cols=68 Identities=18% Similarity=0.190 Sum_probs=55.2
Q ss_pred CCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccc
Q psy16848 121 SSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG 192 (514)
Q Consensus 121 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 192 (514)
.|.+++.++..|.+++++.+.. ++++++++.....+|.+.+..++.++++++|..+.+|+.++.|..+
T Consensus 127 ~g~~~~~v~~~d~~~l~~~i~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~ 194 (398)
T 2rfv_A 127 FGINVRFVDAAKPEEIRAAMRP----ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQ 194 (398)
T ss_dssp TTCEEEEECTTSHHHHHHHCCT----TEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTC
T ss_pred cCCEEEEeCCCCHHHHHHhcCC----CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC
Confidence 4555666666688888887753 5688888887777899999999999999999999999999877653
No 317
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=50.02 E-value=11 Score=35.61 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=52.8
Q ss_pred CCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhh-cCceEEeecccccccc
Q psy16848 122 SAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ-HGALTFVDEVHAVGLY 191 (514)
Q Consensus 122 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~ 191 (514)
|.+++.++..|.+++++.+. .++++++++.....+|.+.|..++.+++++ +|..+.+|+.|+.|..
T Consensus 62 g~~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~ 128 (331)
T 1pff_A 62 GVEVDFIDMAVPGNIEKHLK----PNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPIL 128 (331)
T ss_dssp TCEEEEECTTSTTHHHHTCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHH
T ss_pred CCEEEEeCCCCHHHHHHhhc----CCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCccccc
Confidence 44555555567888877664 356788888877788999999999999999 9999999999987654
No 318
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=49.67 E-value=10 Score=37.73 Aligned_cols=67 Identities=12% Similarity=0.077 Sum_probs=53.7
Q ss_pred CCCCeeeccC-----CChHHHHHHHHhcccCCCcEEEeec----cccccCCccchhHHhhhhhh--cCceEEeecccccc
Q psy16848 121 SSAPKIIYRH-----NDVNHLTQVLENMDVKIPKLVAFET----VHSMTGAICPLKELCEVSHQ--HGALTFVDEVHAVG 189 (514)
Q Consensus 121 ~~~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g 189 (514)
.|.+++.++. .|++++++.+. .++++|.++. .+..+|.+.+..++.+++++ +|+.+.+|++|+.+
T Consensus 132 ~G~~~~~v~~~~~g~~d~e~l~~ai~----~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~ 207 (409)
T 3jzl_A 132 FHIGYSSVPLLENGDVDFPRIAKKMT----PKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEF 207 (409)
T ss_dssp GTCEEEECCCCTTSCCCHHHHHHHCC----TTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTT
T ss_pred cCCEEEEeCCCCCCCcCHHHHHHhcc----CCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcccc
Confidence 3555555544 47888887774 3578999988 77888999999999999999 99999999998877
Q ss_pred cc
Q psy16848 190 LY 191 (514)
Q Consensus 190 ~~ 191 (514)
+.
T Consensus 208 ~~ 209 (409)
T 3jzl_A 208 VE 209 (409)
T ss_dssp TS
T ss_pred cc
Confidence 63
No 319
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=49.20 E-value=17 Score=35.71 Aligned_cols=46 Identities=17% Similarity=0.069 Sum_probs=35.0
Q ss_pred ceeeecCchhhHHHH--HhhccCC--ceeeec----chHHHHhhCCCCEEEecC
Q psy16848 197 GIGERDGQLHNMDII--SGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYRH 242 (514)
Q Consensus 197 g~~~~~G~~~~i~~~--~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~~ 242 (514)
.++..+|++++++.+ +.+++++ +++++. .+...+...|++++.++.
T Consensus 119 ~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~ 172 (420)
T 4f4e_A 119 VTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPY 172 (420)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCCEEEEEC
T ss_pred EEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeee
Confidence 578888999999999 5566777 677765 445667788888887763
No 320
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=49.01 E-value=13 Score=37.84 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=43.5
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhc------CceEEeeccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH------GALTFVDEVHAVGL 190 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~ 190 (514)
|+++|++.+.. ++++|++...-..+|.+.|..++.++++++ |+.+.+|.+|+.++
T Consensus 191 d~~~l~~~i~~----~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~ 251 (502)
T 3hbx_A 191 DPQQAVDMVDE----NTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFI 251 (502)
T ss_dssp CHHHHHHHCCT----TEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGT
T ss_pred CHHHHHHHHhh----CCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchh
Confidence 78888887754 356666555555569999999999999999 99999999887543
No 321
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=48.81 E-value=1.2e+02 Score=29.53 Aligned_cols=64 Identities=27% Similarity=0.381 Sum_probs=54.4
Q ss_pred CCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848 123 APKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 123 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
..+..++++|.++|++.+.+.. .+.+.++++..+..+|.+.| +.++.++++++|..+.+|+.|.
T Consensus 179 ~~~~~~~~~d~~~le~~l~~~~-~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~ 246 (434)
T 3l44_A 179 QEVITVPFNNVETLKEALDKWG-HEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVIT 246 (434)
T ss_dssp TTEEEECTTCHHHHHHHHHHHG-GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTT
T ss_pred CceEecCcccHHHHHHHHHhCC-CCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 3566778889999999998653 34578889999888899998 9999999999999999999885
No 322
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=48.80 E-value=8.5 Score=37.76 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=42.2
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL 190 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 190 (514)
|++++++.+.. ++++|+..+ .+|.+.+..++.++++++|..+.+|+.++.|.
T Consensus 140 d~~~l~~~i~~----~~~~v~~~n---~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~ 191 (399)
T 2oga_A 140 DPLLVEKAITP----RTRALLPVH---LYGHPADMDALRELADRHGLHIVEDAAQAHGA 191 (399)
T ss_dssp CHHHHHHHCCT----TEEEECCBC---GGGCCCCHHHHHHHHHHHTCEECEECTTCTTC
T ss_pred CHHHHHHhcCC----CCeEEEEeC---CcCCccCHHHHHHHHHHcCCEEEEECcccccC
Confidence 78888887753 456666543 46889999999999999999999999998774
No 323
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=48.53 E-value=4.5 Score=41.19 Aligned_cols=54 Identities=11% Similarity=0.085 Sum_probs=43.1
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (514)
|+++|++.+.+ ++++|++......+|.+.+..++.++++++|+.+.+|++|+.+
T Consensus 195 d~~~l~~~i~~----~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~ 248 (497)
T 3mc6_A 195 DLGKVKKFINK----NTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSF 248 (497)
T ss_dssp CTTTTGGGCCS----SEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHH
T ss_pred CHHHHHHHHhh----CCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhh
Confidence 56666665542 4677777766667899999999999999999999999998743
No 324
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=48.14 E-value=13 Score=37.00 Aligned_cols=56 Identities=27% Similarity=0.399 Sum_probs=49.5
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
|.++|++.+.+....+++.++++..+..+|.+.| +.++.++++++|..+.+|+.|.
T Consensus 186 d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~ 245 (439)
T 3dxv_A 186 ILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKV 245 (439)
T ss_dssp HHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred HHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 6889999986544566789999999999999999 9999999999999999999997
No 325
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=47.55 E-value=86 Score=30.36 Aligned_cols=56 Identities=11% Similarity=0.132 Sum_probs=38.8
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccc---hhHHhhhhhhcCceEEeecccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
|.+++++.+. .+++++++.....-+|...| ..++.++++++|..+.+|+.|..+..
T Consensus 161 d~~~l~~~i~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~ 219 (412)
T 2x5d_A 161 ELERAIRESI----PKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVY 219 (412)
T ss_dssp HHHHHHHTEE----SCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBC
T ss_pred CHHHHHHhcc----cCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEecccccccc
Confidence 4566665553 35677776543333566665 46788888999999999999987654
No 326
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=47.35 E-value=24 Score=33.82 Aligned_cols=45 Identities=7% Similarity=-0.009 Sum_probs=32.0
Q ss_pred ceeeecCchhhHHHHHhhccCC--ceeeecc------hHHHHhhCCCCEEEec
Q psy16848 197 GIGERDGQLHNMDIISGTLVNP--EVAIHAS------MIQGIRNSSAPKIIYR 241 (514)
Q Consensus 197 g~~~~~G~~~~i~~~~~~l~~~--~v~~~~~------~~~~~~~~g~~~~~v~ 241 (514)
.+...+|+++++..++.+++++ +++++.+ +...+...|++++.++
T Consensus 73 ~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~ 125 (386)
T 2dr1_A 73 VLLVPSSGTGIMEASIRNGVSKGGKVLVTIIGAFGKRYKEVVESNGRKAVVLE 125 (386)
T ss_dssp EEEESSCHHHHHHHHHHHHSCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEeCChHHHHHHHHHHhhcCCCeEEEEcCCchhHHHHHHHHHhCCceEEEe
Confidence 3667789999999999999887 6666652 3444556676666555
No 327
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=47.19 E-value=26 Score=33.90 Aligned_cols=46 Identities=9% Similarity=0.070 Sum_probs=34.3
Q ss_pred CceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEec
Q psy16848 196 AGIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 196 ~g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~ 241 (514)
..|...+|+++++..++.++.++ +++++. .+...+...|++++.++
T Consensus 88 ~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~ 139 (390)
T 1d2f_A 88 QTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVA 139 (390)
T ss_dssp GGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEE
T ss_pred HHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHCCCEEEEee
Confidence 45788899999999999999887 566654 44555566777776655
No 328
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=46.42 E-value=13 Score=36.44 Aligned_cols=67 Identities=13% Similarity=0.208 Sum_probs=54.4
Q ss_pred CCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848 121 SSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 121 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
.|.+++.++..|.+++++.+.. ++++|+++.....+|.+.+..++.++++++|..+.+|+.++.|..
T Consensus 128 ~g~~~~~~~~~d~~~l~~~i~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~ 194 (398)
T 1gc0_A 128 FGVKLRHVDMADLQALEAAMTP----ATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYL 194 (398)
T ss_dssp GTCEEEEECTTCHHHHHHHCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHH
T ss_pred cCCEEEEECCCCHHHHHHhcCC----CCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccc
Confidence 3455556666688888887753 568888888777889999999999999999999999999887654
No 329
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=45.50 E-value=20 Score=34.51 Aligned_cols=56 Identities=29% Similarity=0.421 Sum_probs=46.3
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccc---hhHHhhhhhhcCceEEeecccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
|++++++.+. .+++.|++......+|.+.| ..++.++++++|..+.+|+.|+....
T Consensus 143 d~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~ 201 (375)
T 3op7_A 143 DLEKLRQLIR----PTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSE 201 (375)
T ss_dssp CHHHHHHHCC----TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSS
T ss_pred CHHHHHHhhc----cCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence 7888888774 36788888877777899999 88999999999999999999875444
No 330
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=45.44 E-value=17 Score=36.00 Aligned_cols=68 Identities=13% Similarity=0.145 Sum_probs=55.2
Q ss_pred cCCCCeeec-cCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccc-ccccc
Q psy16848 120 NSSAPKIIY-RHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH-AVGLY 191 (514)
Q Consensus 120 ~~~~~~~~~-~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~ 191 (514)
..|.+++.+ +.+|.+++++.+.. ++++|+++.....+|.+.|..++.++++++|+.+.+|+.+ +.|..
T Consensus 120 ~~g~~~~~~~~~~d~~~l~~~i~~----~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~ 189 (421)
T 2ctz_A 120 RLGIEVRFTSREERPEEFLALTDE----KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYL 189 (421)
T ss_dssp HTTCEEEECCTTCCHHHHHHHCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTS
T ss_pred HcCCEEEEECCCCCHHHHHHhhcc----CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccc
Confidence 345566666 66688888887753 5688888887777899999999999999999999999999 87743
No 331
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=45.40 E-value=21 Score=36.03 Aligned_cols=56 Identities=14% Similarity=0.248 Sum_probs=43.4
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCc-cchhHHhhhhhhcCceEEeeccccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAI-CPLKELCEVSHQHGALTFVDEVHAVGLYG 192 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 192 (514)
|+++|++.+.. +.+.|++... ..+|.+ .+..++.++++++|+.+.+|++++.+..|
T Consensus 192 d~~~L~~~i~~----~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g 248 (474)
T 1wyu_B 192 DLEALKRELGP----HVAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMG 248 (474)
T ss_dssp CHHHHHHHCST----TEEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTT
T ss_pred CHHHHHHhhCC----CceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhcc
Confidence 78888888742 3466666543 246877 79999999999999999999999766543
No 332
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=45.38 E-value=17 Score=35.65 Aligned_cols=55 Identities=15% Similarity=0.267 Sum_probs=41.9
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccc---hhHHhhhhhhcCceEEeeccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGL 190 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~ 190 (514)
|.++|++.+.. +++.+++......+|...| ..++.++++++|..+.+|+.+....
T Consensus 166 d~~~l~~~l~~----~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~ 223 (416)
T 1bw0_A 166 DLDEIRRLKDD----KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMV 223 (416)
T ss_dssp CHHHHHHHCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCB
T ss_pred CHHHHHHHhcc----CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 77888877642 3456665555446688888 8888899999999999999988643
No 333
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=45.23 E-value=58 Score=31.48 Aligned_cols=70 Identities=6% Similarity=0.093 Sum_probs=44.5
Q ss_pred cCchhhHHHHHhhccCC--ceeeec-c-----hHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCc
Q psy16848 202 DGQLHNMDIISGTLVNP--EVAIHA-S-----MIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG 273 (514)
Q Consensus 202 ~G~~~~i~~~~~~l~~~--~v~~~~-~-----~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG 273 (514)
.|+++++..++.+++++ +++++. . +...+...|++++.++.+ +.|
T Consensus 69 ~s~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~---------------------------~~~ 121 (416)
T 3isl_A 69 GTSRAGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECE---------------------------WGT 121 (416)
T ss_dssp SCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECC---------------------------TTC
T ss_pred CcHHHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHHhcCCeeEEEecC---------------------------CCC
Confidence 45679999999999887 666654 2 223455667776665521 122
Q ss_pred cccCHHHHHHHHHH-cCCEEEEecccc
Q psy16848 274 AICPLKELCEVSHQ-HGALTFVDEVHA 299 (514)
Q Consensus 274 ~~~~l~~l~~l~~~-~gv~li~Dea~~ 299 (514)
.++++++.+..++ .-..+++...+.
T Consensus 122 -~~d~~~l~~~i~~~~~~~v~~~~~~n 147 (416)
T 3isl_A 122 -VFDPEDIIREIKKVKPKIVAMVHGET 147 (416)
T ss_dssp -CCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred -CCCHHHHHHHHhhCCCcEEEEEccCC
Confidence 4578888888875 444555655554
No 334
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=45.16 E-value=31 Score=33.52 Aligned_cols=45 Identities=9% Similarity=0.011 Sum_probs=33.5
Q ss_pred ceeeecCchhhHHHHHhhc-cCC--ceeeec----chHHHHhhCCCCEEEec
Q psy16848 197 GIGERDGQLHNMDIISGTL-VNP--EVAIHA----SMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 197 g~~~~~G~~~~i~~~~~~l-~~~--~v~~~~----~~~~~~~~~g~~~~~v~ 241 (514)
.++..+|+++++..++.++ +++ +++++. .+...+...|++++.++
T Consensus 49 ~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~ 100 (394)
T 1o69_A 49 NALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFID 100 (394)
T ss_dssp EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHHTTCEEEEEC
T ss_pred cEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEE
Confidence 4677889999999999998 776 666665 45566666777766655
No 335
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=45.14 E-value=24 Score=34.31 Aligned_cols=82 Identities=15% Similarity=0.028 Sum_probs=53.9
Q ss_pred CceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCC
Q psy16848 196 AGIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269 (514)
Q Consensus 196 ~g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~ 269 (514)
..++..+|+++++..++.+++++ +++++. .+...+...|++++.++.+.. ..
T Consensus 103 ~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------------------~~ 160 (407)
T 3nra_A 103 DGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYV----------------------SA 160 (407)
T ss_dssp TSEEEESHHHHHHHHHHHTTCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCC----------------------SS
T ss_pred CcEEEeCCcHHHHHHHHHHhCCCCCEEEEcCCcccchHHHHHHcCCEEEEeecccc----------------------cc
Confidence 46788899999999999999887 555544 456667778888777663110 00
Q ss_pred CCCccccCHHHHHHHHHHcCCEEEEecccc
Q psy16848 270 SMTGAICPLKELCEVSHQHGALTFVDEVHA 299 (514)
Q Consensus 270 nptG~~~~l~~l~~l~~~~gv~li~Dea~~ 299 (514)
...+..++++++.+..++.-..+++...+.
T Consensus 161 ~~~~~~~d~~~l~~~l~~~~~~v~~~~p~n 190 (407)
T 3nra_A 161 DETRAGLDLTGLEEAFKAGARVFLFSNPNN 190 (407)
T ss_dssp CCSSCCBCHHHHHHHHHTTCCEEEEESSCT
T ss_pred cCcCCCcCHHHHHHHHhhCCcEEEEcCCCC
Confidence 012334578888887776545555655543
No 336
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=45.13 E-value=17 Score=36.08 Aligned_cols=68 Identities=15% Similarity=0.186 Sum_probs=55.3
Q ss_pred cCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhh--cCceEEeecccccccc
Q psy16848 120 NSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ--HGALTFVDEVHAVGLY 191 (514)
Q Consensus 120 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~ 191 (514)
..|.++..++.+|++++++.|.. ++++|.++.....+|.+.+..++.+++++ +|+.+.+|..++.++.
T Consensus 144 ~~G~~v~~v~~~d~~~le~ai~~----~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~ 213 (415)
T 2fq6_A 144 KLGVTTSWFDPLIGADIVKHLQP----NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVL 213 (415)
T ss_dssp GGTCEEEEECTTCGGGGGGGCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTS
T ss_pred HcCcEEEEECCCCHHHHHHhhcc----CCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCccccc
Confidence 34666666666788888777643 46889988888888999999999999999 9999999999886643
No 337
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=44.87 E-value=1.5e+02 Score=28.74 Aligned_cols=64 Identities=31% Similarity=0.384 Sum_probs=54.8
Q ss_pred CCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848 123 APKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 123 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
..++.++++|.++|++.+.+.. .+++.++++..+..+|.+.| +.++.++++++|..+.+|+.|.
T Consensus 177 ~~~~~~~~~d~~~le~~l~~~~-~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~ 244 (429)
T 3k28_A 177 KNTITVAYNDLESVKYAFEQFG-DDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMT 244 (429)
T ss_dssp TTEEEEETTCHHHHHHHHHHHG-GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTT
T ss_pred CceeecCCCCHHHHHHHHHhCC-CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 3566778889999999998653 34678899999999999999 9999999999999999999984
No 338
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=44.41 E-value=27 Score=33.45 Aligned_cols=46 Identities=7% Similarity=0.061 Sum_probs=35.1
Q ss_pred CceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEec
Q psy16848 196 AGIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 196 ~g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~ 241 (514)
..++..+|+++++..++..+.++ +++++. .+...+...|++++.++
T Consensus 83 ~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~ 134 (383)
T 3kax_A 83 EWIVFSAGIVPALSTSIQAFTKENESVLVQPPIYPPFFEMVTTNNRQLCVSP 134 (383)
T ss_dssp GGEEEESCHHHHHHHHHHHHCCTTCEEEECSSCCHHHHHHHHHTTCEEEECC
T ss_pred hhEEEcCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCEEEecc
Confidence 45788899999999999999887 666654 44566677787777665
No 339
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=44.10 E-value=19 Score=34.88 Aligned_cols=68 Identities=19% Similarity=0.304 Sum_probs=56.0
Q ss_pred cCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848 120 NSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 120 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
..|.+++.++..|.+++++.+.. ++++++++.....+|.+.+..++.++++++|..+.+|+.|+.+..
T Consensus 114 ~~g~~~~~~~~~d~~~l~~~i~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~ 181 (386)
T 1cs1_A 114 RGCYRVLFVDQGDEQALRAALAE----KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPAL 181 (386)
T ss_dssp TTSCEEEEECTTCHHHHHHHHHT----CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT
T ss_pred hcCCEEEEeCCCCHHHHHHhhcc----CCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCccccc
Confidence 34556666666789999998863 578888888777889999999999999999999999999976644
No 340
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=43.86 E-value=23 Score=34.99 Aligned_cols=47 Identities=11% Similarity=0.117 Sum_probs=33.7
Q ss_pred CceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHh-hCCCCEEEecC
Q psy16848 196 AGIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIR-NSSAPKIIYRH 242 (514)
Q Consensus 196 ~g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~-~~g~~~~~v~~ 242 (514)
..++..+|+++++..++.++.++ +++++. .+...+. ..|++++.++.
T Consensus 112 ~~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~ 165 (435)
T 3piu_A 112 NHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHC 165 (435)
T ss_dssp GGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEEC
T ss_pred HHEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHHHhcCCEEEEeeC
Confidence 45788889999999999999987 555554 3344444 56777776653
No 341
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=43.19 E-value=19 Score=35.03 Aligned_cols=46 Identities=43% Similarity=0.715 Sum_probs=39.1
Q ss_pred CcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccccc
Q psy16848 148 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGE 193 (514)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 193 (514)
+++|++......+|.+.|..++.++++++|..+.+|+.++.|..+.
T Consensus 178 ~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~ 223 (401)
T 1fc4_A 178 HVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGE 223 (401)
T ss_dssp SEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSST
T ss_pred ceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCC
Confidence 4577777776778999999999999999999999999998777653
No 342
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=43.04 E-value=24 Score=34.01 Aligned_cols=47 Identities=13% Similarity=0.185 Sum_probs=35.4
Q ss_pred CceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEecC
Q psy16848 196 AGIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYRH 242 (514)
Q Consensus 196 ~g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~~ 242 (514)
..+...+|+++++..++..+.++ +++++. .+...+...|++++.++.
T Consensus 91 ~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~ 143 (391)
T 4dq6_A 91 EWLIYSPGVIPAISLLINELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPL 143 (391)
T ss_dssp GGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCTHHHHHHHHTTCEEEECCC
T ss_pred HHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCHHHHHHHHHcCCeEEeeee
Confidence 45778889999999999999887 566554 445666777877776653
No 343
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=43.02 E-value=20 Score=35.36 Aligned_cols=46 Identities=13% Similarity=0.184 Sum_probs=33.1
Q ss_pred CceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEec
Q psy16848 196 AGIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 196 ~g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~ 241 (514)
..|...+|++++++.++.++.++ +++++. .+...+...|++++.++
T Consensus 110 ~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~ 161 (425)
T 1vp4_A 110 DNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVP 161 (425)
T ss_dssp GGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEE
T ss_pred ccEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEec
Confidence 45788889999999999999887 566654 44455566676666544
No 344
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=42.99 E-value=36 Score=32.25 Aligned_cols=46 Identities=13% Similarity=0.069 Sum_probs=32.9
Q ss_pred ceeeecCchhhHHHHHhhccCCceeeec----chHHHHhhCCCCEEEecC
Q psy16848 197 GIGERDGQLHNMDIISGTLVNPEVAIHA----SMIQGIRNSSAPKIIYRH 242 (514)
Q Consensus 197 g~~~~~G~~~~i~~~~~~l~~~~v~~~~----~~~~~~~~~g~~~~~v~~ 242 (514)
.++.++|+++++..++..+...+++++. .+...+...|++++.++.
T Consensus 69 ~i~~t~g~~~al~~~~~~l~gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~ 118 (350)
T 3fkd_A 69 AILVTNGPTAAFYQIAQAFRGSRSLIAIPSFAEYEDACRMYEHEVCFYPS 118 (350)
T ss_dssp GEEEESHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHTTCEEEEEET
T ss_pred HEEEcCCHHHHHHHHHHHHCCCEEEEeCCCcHHHHHHHHHcCCeEEEEec
Confidence 4566778999999999988833666655 445666777877776663
No 345
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=42.98 E-value=28 Score=33.64 Aligned_cols=46 Identities=9% Similarity=-0.057 Sum_probs=33.4
Q ss_pred ceeeecCchhhHHHH--HhhccCC--ceeeec----chHHHHhhCCCCEEEecC
Q psy16848 197 GIGERDGQLHNMDII--SGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYRH 242 (514)
Q Consensus 197 g~~~~~G~~~~i~~~--~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~~ 242 (514)
.++.++|+++++..+ +.+++++ +++++. .+...+...|++++.++.
T Consensus 97 ~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~ 150 (397)
T 3fsl_A 97 ATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPW 150 (397)
T ss_dssp EEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTCCEEEECC
T ss_pred EEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCCceEEEee
Confidence 577888999999999 4566676 666654 445666778888777663
No 346
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=42.79 E-value=31 Score=33.23 Aligned_cols=75 Identities=16% Similarity=0.136 Sum_probs=49.0
Q ss_pred ceeeecCchhhHHHHHhhccCC--ceeeec----c--hHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecC
Q psy16848 197 GIGERDGQLHNMDIISGTLVNP--EVAIHA----S--MIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETV 268 (514)
Q Consensus 197 g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~--~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~ 268 (514)
.++..+|+++++..++.++.++ +++++. . +...+...|++++.++.+
T Consensus 87 ~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~------------------------- 141 (393)
T 1vjo_A 87 TIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKP------------------------- 141 (393)
T ss_dssp EEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECC-------------------------
T ss_pred EEEEeCchHHHHHHHHHhccCCCCEEEEEcCChhHHHHHHHHHHcCCceEEEecC-------------------------
Confidence 4777889999999999999887 566655 2 344455667666655521
Q ss_pred CCCCccccCHHHHHHHHHH-cCCEEEEecccc
Q psy16848 269 HSMTGAICPLKELCEVSHQ-HGALTFVDEVHA 299 (514)
Q Consensus 269 ~nptG~~~~l~~l~~l~~~-~gv~li~Dea~~ 299 (514)
+ +...++++|.+..++ .-..+++...+.
T Consensus 142 --~-~~~~d~~~l~~~l~~~~~~~v~~~~~~n 170 (393)
T 1vjo_A 142 --W-GEVFSLEELRTALETHRPAILALVHAET 170 (393)
T ss_dssp --T-TCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred --C-CCCCCHHHHHHHHhhCCceEEEEeccCC
Confidence 1 123567888887776 334556655544
No 347
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=42.55 E-value=30 Score=33.49 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=34.1
Q ss_pred CceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEec
Q psy16848 196 AGIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 196 ~g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~ 241 (514)
..+...+|+++++..++.++.++ +++++. .+...+...|++++.++
T Consensus 90 ~~v~~t~g~~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~ 141 (399)
T 1c7n_A 90 DWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECE 141 (399)
T ss_dssp GGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECC
T ss_pred hhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEecc
Confidence 45788899999999999999886 566654 44555566777766655
No 348
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=42.54 E-value=20 Score=35.41 Aligned_cols=73 Identities=7% Similarity=-0.089 Sum_probs=50.9
Q ss_pred eeeecCchhhHHHHHhhccC--C-ceeeec----chHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCC
Q psy16848 198 IGERDGQLHNMDIISGTLVN--P-EVAIHA----SMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHS 270 (514)
Q Consensus 198 ~~~~~G~~~~i~~~~~~l~~--~-~v~~~~----~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~n 270 (514)
++...|++++++++...+.+ | +|+++. .|...+...|++++.++..+
T Consensus 100 i~~t~G~~~al~~~~~~l~~~~~d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~-------------------------- 153 (405)
T 3k7y_A 100 TIQCIGGTGAIFVLLEFLKMLNVETLYVTNPPYINHVNMIESRGFNLKYINFFD-------------------------- 153 (405)
T ss_dssp EEEEEHHHHHHHHHHHHHHTTTCCEEEEESSCCHHHHHHHHTTTCEEEEECCEE--------------------------
T ss_pred EEEcCchHHHHHHHHHHHHhcCCCEEEEeCCCCHhHHHHHHHcCCeEEEEeccc--------------------------
Confidence 57788999999999998887 5 777776 45667788898888776310
Q ss_pred CCccccCHHHHHHHHHHc--CCEEEEec
Q psy16848 271 MTGAICPLKELCEVSHQH--GALTFVDE 296 (514)
Q Consensus 271 ptG~~~~l~~l~~l~~~~--gv~li~De 296 (514)
+.+.-++++++.+.+++. ..++++-.
T Consensus 154 ~~~~~~d~~~l~~~l~~~~~~~~i~l~~ 181 (405)
T 3k7y_A 154 YNLIDINYDLFLNDLRNIPNGSSVILQI 181 (405)
T ss_dssp TTTTEECHHHHHHHHHHSCSSCEEEECC
T ss_pred cccCCcCHHHHHHHHHhCCCCeEEEEeC
Confidence 113445778888877763 34555543
No 349
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=42.09 E-value=1.7e+02 Score=25.35 Aligned_cols=136 Identities=13% Similarity=0.158 Sum_probs=83.7
Q ss_pred CChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHH
Q psy16848 131 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDI 210 (514)
Q Consensus 131 ~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~ 210 (514)
.+.++|+..+... .. -+|-.+|++..++++.+.++++|.++++...-..|+.. ...++++
T Consensus 17 r~~~~l~~al~s~----~~-----~ifll~g~i~~l~~~v~~lk~~~K~v~Vh~Dli~Gls~-----------d~~ai~f 76 (192)
T 3kts_A 17 HNQKDMEKILELD----LT-----YMVMLETHVAQLKALVKYAQAGGKKVLLHADLVNGLKN-----------DDYAIDF 76 (192)
T ss_dssp SSSHHHHHHTTSS----CC-----EEEECSEETTTHHHHHHHHHHTTCEEEEEGGGEETCCC-----------SHHHHHH
T ss_pred cCHHHHHHHHcCC----CC-----EEEEecCcHHHHHHHHHHHHHcCCeEEEecCchhccCC-----------cHHHHHH
Confidence 3778888877543 12 24556789999999999999999998885444434321 2445666
Q ss_pred HHhhccCCceeeec--chHHHHhhCCCCEEEec-CCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHH
Q psy16848 211 ISGTLVNPEVAIHA--SMIQGIRNSSAPKIIYR-HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ 287 (514)
Q Consensus 211 ~~~~l~~~~v~~~~--~~~~~~~~~g~~~~~v~-~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~ 287 (514)
+.. ..+|+.++.. .....+...|...++-- --|-..++..++.....++.++=+- | |. +| +-|.+++++
T Consensus 77 L~~-~~~pdGIIsTk~~~i~~Ak~~gL~tIqR~FliDS~al~~~~~~i~~~~PD~iEiL----P-Gi-~p-~iI~~i~~~ 148 (192)
T 3kts_A 77 LCT-EICPDGIISTRGNAIMKAKQHKMLAIQRLFMIDSSAYNKGVALIQKVQPDCIELL----P-GI-IP-EQVQKMTQK 148 (192)
T ss_dssp HHH-TTCCSEEEESCHHHHHHHHHTTCEEEEEEECCSHHHHHHHHHHHHHHCCSEEEEE----C-TT-CH-HHHHHHHHH
T ss_pred HHh-CCCCCEEEeCcHHHHHHHHHCCCeEEEEEEEEEcchHHHHHHHHhhcCCCEEEEC----C-ch-hH-HHHHHHHHh
Confidence 654 5577666665 55677777777644433 3355555555554332233444222 1 32 23 567777788
Q ss_pred cCCEEEE
Q psy16848 288 HGALTFV 294 (514)
Q Consensus 288 ~gv~li~ 294 (514)
.++++|.
T Consensus 149 ~~~PiIa 155 (192)
T 3kts_A 149 LHIPVIA 155 (192)
T ss_dssp HCCCEEE
T ss_pred cCCCEEE
Confidence 8999987
No 350
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=42.08 E-value=27 Score=37.42 Aligned_cols=46 Identities=15% Similarity=0.134 Sum_probs=36.2
Q ss_pred CceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEec
Q psy16848 196 AGIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 196 ~g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~ 241 (514)
..+...+|++.++..++.++++| +|+++. ++...+.+.|+++++++
T Consensus 212 ~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~ 263 (715)
T 3n75_A 212 RSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPIYFR 263 (715)
T ss_dssp EEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHSCCEEEEEC
T ss_pred CceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHcCCEEEEEe
Confidence 34666789899999999999998 666654 66777888898888766
No 351
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=41.37 E-value=15 Score=35.79 Aligned_cols=59 Identities=25% Similarity=0.376 Sum_probs=48.6
Q ss_pred eeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848 125 KIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 125 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
+..++..|+++|++.+. .++++++++..+..+|.+.| ..++.++++++|..+.+|+.|+
T Consensus 167 ~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~ 229 (395)
T 1vef_A 167 VEFIPYNDVEALKRAVD----EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT 229 (395)
T ss_dssp EEEECTTCHHHHHHHCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred eeEeCCCcHHHHHHHhc----cCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 34445568899988875 25688888887777898888 9999999999999999999998
No 352
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=41.06 E-value=19 Score=35.06 Aligned_cols=68 Identities=19% Similarity=0.238 Sum_probs=55.1
Q ss_pred cCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848 120 NSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 120 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
..|.+++.++..|.+++++.+.. ++++|.++.....+|.+.+..++.++++++|..+.+|+.++.+..
T Consensus 121 ~~g~~~~~v~~~d~~~l~~~i~~----~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~ 188 (389)
T 3acz_A 121 RFGIEVDLIDTSDVEKVKAAWKP----NTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCF 188 (389)
T ss_dssp HTTCEEEEECTTCHHHHHHTCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTT
T ss_pred HcCCEEEEECCCCHHHHHHhcCC----CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc
Confidence 44566666666788888877743 467888888777789999999999999999999999999887654
No 353
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=40.91 E-value=19 Score=35.84 Aligned_cols=69 Identities=17% Similarity=0.157 Sum_probs=57.4
Q ss_pred hcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848 119 RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 119 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
+..|.+++.++.+|++++++.+.. ++++|.++.....+|.+.+..++.++++++|+.+.+|++++.|..
T Consensus 143 ~~~G~~~~~v~~~d~~~l~~ai~~----~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~ 211 (430)
T 3ri6_A 143 PSFGIEVRFVDVMDSLAVEHACDE----TTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYL 211 (430)
T ss_dssp HHTTCEEEEECTTCHHHHHHHCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTT
T ss_pred HHcCCEEEEeCCCCHHHHHHhhCC----CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc
Confidence 445667777777788988887743 568888888888889999999999999999999999999887654
No 354
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=40.80 E-value=21 Score=35.69 Aligned_cols=59 Identities=22% Similarity=0.335 Sum_probs=50.9
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
|.+++++.|.++. .+++++++.+....+|.+.|..++.++++++|+.+.+|.+|+.|..
T Consensus 200 d~~~l~~~i~~~~-~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~ 258 (465)
T 3e9k_A 200 RIEDILEVIEKEG-DSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNV 258 (465)
T ss_dssp CHHHHHHHHHHHG-GGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTS
T ss_pred CHHHHHHHHHhcC-CCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCc
Confidence 7899999997642 3568888988888889999999999999999999999999987653
No 355
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=40.46 E-value=21 Score=35.03 Aligned_cols=68 Identities=18% Similarity=0.232 Sum_probs=56.1
Q ss_pred cCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcC-ceEEeecccccccc
Q psy16848 120 NSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHG-ALTFVDEVHAVGLY 191 (514)
Q Consensus 120 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~ 191 (514)
..|.+++.++.+|.+++++.+. .++++|+++.....+|.+.+..++.++++++| ..+.+|+.++.+..
T Consensus 128 ~~G~~v~~v~~~d~~~l~~~i~----~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~ 196 (403)
T 3cog_A 128 EFGLKISFVDCSKIKLLEAAIT----PETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYF 196 (403)
T ss_dssp GGTCEEEEECTTSHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTT
T ss_pred HcCCEEEEECCCCHHHHHHhcC----cCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCccccc
Confidence 4466667777778888887774 35688888888888899999999999999999 99999999987654
No 356
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=40.38 E-value=26 Score=32.88 Aligned_cols=42 Identities=14% Similarity=0.007 Sum_probs=27.2
Q ss_pred ceeeecCchhhHHHHHhhccCC-ceeeec----chHHHHhhCCCCEEE
Q psy16848 197 GIGERDGQLHNMDIISGTLVNP-EVAIHA----SMIQGIRNSSAPKII 239 (514)
Q Consensus 197 g~~~~~G~~~~i~~~~~~l~~~-~v~~~~----~~~~~~~~~g~~~~~ 239 (514)
.++.+.|+++++..++..+ .. +++++. .+...+...|++++.
T Consensus 70 ~i~~t~G~~~~l~~~~~~~-~gd~vl~~~p~~~~~~~~~~~~g~~~~~ 116 (337)
T 3p1t_A 70 NLMLVRGIDECFDRISAEF-SSMRFVTAWPGFDGYRARIAVSGLRHFE 116 (337)
T ss_dssp GEEEESHHHHHHHHHHHHS-TTSEEEEESSSCSHHHHHHTTSCCEEEE
T ss_pred HEEEeCCHHHHHHHHHHhc-CCCeEEEeCCCcHHHHHHHHHcCCEEEE
Confidence 4566678899999999888 32 566654 344455555655443
No 357
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=40.00 E-value=21 Score=34.66 Aligned_cols=59 Identities=24% Similarity=0.347 Sum_probs=50.5
Q ss_pred eeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848 125 KIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 125 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
+..++.+|+++|++.+. .++++|+++.....+|.+.| ..++.++++++|..+.+|+.|+
T Consensus 164 ~~~~~~~d~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~ 226 (392)
T 3ruy_A 164 IIVIPYGDLEALKAAIT----PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQT 226 (392)
T ss_dssp EEEECTTCHHHHHHHCC----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTT
T ss_pred CeeeCcccHHHHHHHhc----cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechh
Confidence 45566778999998876 46788888888778899998 9999999999999999999985
No 358
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=39.62 E-value=40 Score=32.16 Aligned_cols=75 Identities=15% Similarity=0.124 Sum_probs=47.2
Q ss_pred CceeeecCchhhHHHHHhhccCC--ceeeec-ch-----HHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEec
Q psy16848 196 AGIGERDGQLHNMDIISGTLVNP--EVAIHA-SM-----IQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFET 267 (514)
Q Consensus 196 ~g~~~~~G~~~~i~~~~~~l~~~--~v~~~~-~~-----~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~ 267 (514)
..++..+|+++++. ++..++++ +++++. .| ...+...|++++.++.
T Consensus 55 ~~v~~~~g~t~al~-~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~------------------------- 108 (384)
T 3zrp_A 55 QPLIIPGGGTSAME-SVTSLLKPNDKILVVSNGVFGDRWEQIFKRYPVNVKVLRP------------------------- 108 (384)
T ss_dssp EEEEEESCHHHHHH-HGGGGCCTTCEEEEECSSHHHHHHHHHHTTSSCEEEEECC-------------------------
T ss_pred cEEEEcCCcHHHHH-HHHhhcCCCCEEEEecCCcchHHHHHHHHHcCCcEEEecC-------------------------
Confidence 34778889999999 99998887 566654 22 2223456666665552
Q ss_pred CCCCCccccCHHHHHHHHHHcCC-EEEEecccc
Q psy16848 268 VHSMTGAICPLKELCEVSHQHGA-LTFVDEVHA 299 (514)
Q Consensus 268 ~~nptG~~~~l~~l~~l~~~~gv-~li~Dea~~ 299 (514)
++.| .++++++.+.+++++. .+++...+.
T Consensus 109 --~~~~-~~d~~~l~~~i~~~~~~~v~~~~~~n 138 (384)
T 3zrp_A 109 --SPGD-YVKPGEVEEEVRKSEYKLVALTHVET 138 (384)
T ss_dssp --STTC-CCCHHHHHHHHHHSCEEEEEEESEET
T ss_pred --CCCC-CCCHHHHHHHHHhCCCcEEEEeCCCC
Confidence 1122 4578888888888543 344444443
No 359
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=39.56 E-value=20 Score=35.68 Aligned_cols=55 Identities=13% Similarity=-0.009 Sum_probs=42.3
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhc------CceEEeeccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH------GALTFVDEVHAVGL 190 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~ 190 (514)
|+++|++.|.+ ++++|+....-..+|.+.|..++.++++++ |..+.+|.+++.+.
T Consensus 176 d~~~l~~~i~~----~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~ 236 (452)
T 2dgk_A 176 DPKRMIEACDE----NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFL 236 (452)
T ss_dssp CHHHHHHHCCT----TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGT
T ss_pred CHHHHHHHHhh----CCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHH
Confidence 78888888753 345555544333579999999999999995 99999999887654
No 360
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=39.43 E-value=30 Score=33.96 Aligned_cols=79 Identities=13% Similarity=0.048 Sum_probs=50.2
Q ss_pred CceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCC
Q psy16848 196 AGIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269 (514)
Q Consensus 196 ~g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~ 269 (514)
..|...+|+++++..++..+.++ +++++. .+...+...|.+++.++...
T Consensus 120 ~~v~~~~g~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~------------------------- 174 (421)
T 3l8a_A 120 EDILFIDGVVPAISIALQAFSEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQI------------------------- 174 (421)
T ss_dssp GGEEEESCHHHHHHHHHHHHSCTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEE-------------------------
T ss_pred HHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHCCCEEEeccccc-------------------------
Confidence 45777889999999999999887 566554 34555566677666555210
Q ss_pred CCCccccCHHHHHHHHHHcC-CEEEEecccc
Q psy16848 270 SMTGAICPLKELCEVSHQHG-ALTFVDEVHA 299 (514)
Q Consensus 270 nptG~~~~l~~l~~l~~~~g-v~li~Dea~~ 299 (514)
...+..+++++|.+..++.+ ..+++-..+.
T Consensus 175 ~~~~~~~d~~~le~~i~~~~~~~vil~~p~n 205 (421)
T 3l8a_A 175 INGRFEIDFEQLEKDIIDNNVKIYLLCSPHN 205 (421)
T ss_dssp ETTEEECCHHHHHHHHHHTTEEEEEEESSBT
T ss_pred cCCCeeeCHHHHHHHhhccCCeEEEECCCCC
Confidence 01123457888888887543 3444555554
No 361
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=39.41 E-value=25 Score=34.14 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=32.5
Q ss_pred CceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEec
Q psy16848 196 AGIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 196 ~g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~ 241 (514)
..+...+|+++++..++..+.++ +++++. .+...+...|++++.++
T Consensus 99 ~~v~~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~ 150 (407)
T 2zc0_A 99 ENIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVP 150 (407)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEE
T ss_pred ceEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCEEEEcc
Confidence 45778889999999999999876 566554 33455556666665544
No 362
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=39.41 E-value=23 Score=35.65 Aligned_cols=56 Identities=21% Similarity=0.348 Sum_probs=47.6
Q ss_pred ChHHHHHHHHhccc--CCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848 132 DVNHLTQVLENMDV--KIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 132 d~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
|+++|++.|.+... .+.+.|+++.++..+|.+.| +.++.++++++|+.+.+|+.+.
T Consensus 241 d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~ 302 (472)
T 1ohv_A 241 CLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQT 302 (472)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCccc
Confidence 67888888876432 15679999998888999888 8999999999999999999986
No 363
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=39.39 E-value=79 Score=30.48 Aligned_cols=40 Identities=0% Similarity=-0.218 Sum_probs=29.1
Q ss_pred cCchhhHHHHHhhc-cCC--ceeeec----chHHHHhhCCCCEEEec
Q psy16848 202 DGQLHNMDIISGTL-VNP--EVAIHA----SMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 202 ~G~~~~i~~~~~~l-~~~--~v~~~~----~~~~~~~~~g~~~~~v~ 241 (514)
.++++++..++.++ +++ +|+++. ++...+...|+++++++
T Consensus 60 ~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~ 106 (377)
T 3ju7_A 60 ANATLGLMAAIQLKKRKKGKYALMPSFTFPATPLAAIWCGLEPYFID 106 (377)
T ss_dssp SCHHHHHHHHHHHHSCTTCCEEEEESSSCTHHHHHHHHTTCEEEEEC
T ss_pred CCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEe
Confidence 34578888888887 776 777765 45666777888877766
No 364
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=39.35 E-value=35 Score=32.37 Aligned_cols=56 Identities=9% Similarity=0.138 Sum_probs=39.8
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH---HhhhhhhcCceEEeeccccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE---LCEVSHQHGALTFVDEVHAVGLYG 192 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~ 192 (514)
+++++++.+.+ ++++++......+|.+.|..+ +.++++++|..+.+|+.|+....+
T Consensus 134 ~~~~l~~~l~~-----~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~ 192 (361)
T 3ftb_A 134 DYEDIISKIDD-----VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD 192 (361)
T ss_dssp CHHHHHHHTTT-----CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC
T ss_pred CHHHHHHhccC-----CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC
Confidence 56777777754 667776666555677777555 555556999999999998766554
No 365
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=38.72 E-value=19 Score=35.47 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=55.6
Q ss_pred cCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848 120 NSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 120 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
..|.+++.++.+|.+++++.+.. ++++|+++.....+|.+.+..++.++++++|+.+.+|+.++.+..
T Consensus 129 ~~g~~~~~v~~~d~~~l~~~i~~----~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~ 196 (400)
T 3nmy_A 129 TAGLDFSFVDLTDPAAFKAAIRA----DTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPML 196 (400)
T ss_dssp HHCCEEEEECTTSHHHHHHHCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHH
T ss_pred hcCeEEEEECCCCHHHHHHHhcc----CCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCccccc
Confidence 34566667777788999888753 568888888777789999999999999999999999998876543
No 366
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=38.45 E-value=27 Score=33.85 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=32.5
Q ss_pred CceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEec
Q psy16848 196 AGIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 196 ~g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~ 241 (514)
..+...+|+++++..++.++.++ +++++. .+...+...|++++.++
T Consensus 92 ~~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~ 143 (397)
T 2zyj_A 92 EEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVP 143 (397)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEE
T ss_pred hhEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEecC
Confidence 45778889999999999999887 565554 34455556666665544
No 367
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=38.32 E-value=19 Score=34.59 Aligned_cols=53 Identities=13% Similarity=0.178 Sum_probs=41.1
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
|++++++.+.+ +++.++. .+.+|.+.+..++.++++++|+.+.+|++|+.|..
T Consensus 113 d~~~l~~~l~~----~~~~v~~---~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~ 165 (373)
T 3frk_A 113 DPSLIESAITE----KTKAIIA---VHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSL 165 (373)
T ss_dssp CGGGTGGGCCT----TEEEEEE---ECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCE
T ss_pred CHHHHHHhcCC----CCeEEEE---ECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCE
Confidence 56666655532 4566663 34689999999999999999999999999987654
No 368
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=37.62 E-value=38 Score=32.39 Aligned_cols=76 Identities=8% Similarity=0.002 Sum_probs=49.4
Q ss_pred CceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCC
Q psy16848 196 AGIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269 (514)
Q Consensus 196 ~g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~ 269 (514)
..+...+|+++++..++..+.++ +++++. .+...+...|++++.++.+
T Consensus 93 ~~v~~~~G~~~al~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~-------------------------- 146 (369)
T 3cq5_A 93 DNLWAANGSNEILQQLLQAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRG-------------------------- 146 (369)
T ss_dssp GGEEEESHHHHHHHHHHHHHCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEECC--------------------------
T ss_pred HhEEECCChHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEecCC--------------------------
Confidence 45788889999999999999876 565554 4455556677776655521
Q ss_pred CCCccccCHHHHHHHHHH-cCCEEEEecccc
Q psy16848 270 SMTGAICPLKELCEVSHQ-HGALTFVDEVHA 299 (514)
Q Consensus 270 nptG~~~~l~~l~~l~~~-~gv~li~Dea~~ 299 (514)
. +...+++++.+.+++ .-..+++...+.
T Consensus 147 -~-~~~~d~~~l~~~i~~~~~~~v~~~~~~n 175 (369)
T 3cq5_A 147 -A-DFRIDMDVALEEIRAKQPDIVFVTTPNN 175 (369)
T ss_dssp -T-TSSCCHHHHHHHHHHHCCSEEEEESSCT
T ss_pred -c-CCCCCHHHHHHHhhccCCCEEEEeCCCC
Confidence 1 123567888877776 334455555543
No 369
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=37.43 E-value=42 Score=31.67 Aligned_cols=46 Identities=13% Similarity=0.054 Sum_probs=31.5
Q ss_pred CceeeecCchhhHHHHHhhccCC--ceeeecch----HH--HHhhCCCCEEEec
Q psy16848 196 AGIGERDGQLHNMDIISGTLVNP--EVAIHASM----IQ--GIRNSSAPKIIYR 241 (514)
Q Consensus 196 ~g~~~~~G~~~~i~~~~~~l~~~--~v~~~~~~----~~--~~~~~g~~~~~v~ 241 (514)
..+...+|+++++..++..+.++ +++++.+. .. .+...|.+++.++
T Consensus 67 ~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~ 120 (359)
T 1svv_A 67 ADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAP 120 (359)
T ss_dssp SEEEEESCHHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEEC
T ss_pred ccEEEeCCchHHHHHHHHHHhCCCCEEEEcccchHHHHHHHHHhcCCCeeEEEe
Confidence 34777889999999999999887 66666522 22 2445566655544
No 370
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=37.31 E-value=25 Score=34.46 Aligned_cols=56 Identities=21% Similarity=0.323 Sum_probs=46.9
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhh-cCceEEeecccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ-HGALTFVDEVHAVGLY 191 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~ 191 (514)
|.+++++.+.. ++++++++.....+|.+.+..++.+++++ +|..+.+|+.++.+..
T Consensus 136 d~~~l~~~i~~----~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~ 192 (404)
T 1e5e_A 136 IPGEVKKHMKP----NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMI 192 (404)
T ss_dssp STTHHHHHCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTT
T ss_pred CHHHHHHhcCC----CCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhh
Confidence 67778777642 56888888777778999999999999999 9999999999987654
No 371
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=37.13 E-value=20 Score=34.36 Aligned_cols=59 Identities=20% Similarity=0.323 Sum_probs=47.4
Q ss_pred eeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848 125 KIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 125 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
+..++..|.++|++.+. .++++++++..+..+|.+.+ ..++.++++++|..+.+|+.|+
T Consensus 154 ~~~~~~~d~~~l~~~l~----~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~ 216 (375)
T 2eh6_A 154 FSYAKLNDIDSVYKLLD----EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQT 216 (375)
T ss_dssp EEEECTTCHHHHHTTCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred ceeCCCchHHHHHHHhc----CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEecccc
Confidence 34445568888887664 35688888887777799888 8999999999999999999988
No 372
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=36.69 E-value=39 Score=32.03 Aligned_cols=50 Identities=10% Similarity=0.177 Sum_probs=37.0
Q ss_pred ChHHHHHHHHhcccCCCcEEEeecccc-ccCCccc---hhHHhhhhhhcCceEEeecccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHS-MTGAICP---LKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
|++++++. . +++++++..... ++|.+.+ +.++.++++++|..+.+|++|.
T Consensus 126 d~~~l~~~----~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~ 179 (357)
T 3lws_A 126 TLDEIKAL----P--DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARL 179 (357)
T ss_dssp CHHHHHTC----C--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTH
T ss_pred CHHHHhcC----c--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchh
Confidence 67777665 1 267777766653 4487776 7778888999999999998876
No 373
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=36.54 E-value=39 Score=32.26 Aligned_cols=46 Identities=17% Similarity=0.133 Sum_probs=32.6
Q ss_pred CceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEec
Q psy16848 196 AGIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 196 ~g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~ 241 (514)
..+...+|+++++..++..+.++ +++++. .+...+...|++++.++
T Consensus 90 ~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~ 141 (370)
T 2z61_A 90 DNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCD 141 (370)
T ss_dssp GGEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEEC
T ss_pred hhEEECCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEeC
Confidence 45788899999999999999887 566654 34455556666655443
No 374
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=36.49 E-value=32 Score=32.94 Aligned_cols=59 Identities=14% Similarity=0.098 Sum_probs=49.4
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGE 193 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 193 (514)
|+++|++.+.+. +++.+++......+|.+.|..++.++++++|..+.+|++|+.+..+.
T Consensus 159 d~~~l~~~i~~~---~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~ 217 (397)
T 3f9t_A 159 DEKFVKDAVEDY---DVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPF 217 (397)
T ss_dssp CHHHHHHHHHHS---CCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGG
T ss_pred CHHHHHHHHhhc---CCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhh
Confidence 889999998764 56677776666778999999999999999999999999998765543
No 375
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=36.19 E-value=24 Score=34.11 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=34.7
Q ss_pred CceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEec
Q psy16848 196 AGIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 196 ~g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~ 241 (514)
..|+.++|+++++..++.+++++ +++++. .+...+...|++++.++
T Consensus 92 ~~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 143 (385)
T 1b5p_A 92 EETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVE 143 (385)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEE
T ss_pred HHEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEee
Confidence 35788899999999999999987 566655 44555667777766655
No 376
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=36.08 E-value=37 Score=33.34 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=32.9
Q ss_pred CCceeeecCchhhHHHHHhhccCC--ceeeec----chHHHH-hhCCCCEEEec
Q psy16848 195 GAGIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGI-RNSSAPKIIYR 241 (514)
Q Consensus 195 ~~g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~-~~~g~~~~~v~ 241 (514)
...+..++|++++++.++.++.++ +++++. .+...+ ...|++++.++
T Consensus 108 ~~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~ 161 (428)
T 1iay_A 108 PERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIH 161 (428)
T ss_dssp TTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEEC
T ss_pred hhhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEEee
Confidence 356788899999999999999887 566665 223323 24566666555
No 377
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=36.07 E-value=21 Score=34.95 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=53.1
Q ss_pred cCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhc----CceEEeecccccccc
Q psy16848 120 NSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH----GALTFVDEVHAVGLY 191 (514)
Q Consensus 120 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~ 191 (514)
..|.+++.++.+| +++++.+. .++++|+++.....+|.+.|..++.++++++ |+.+.+|+.++.+..
T Consensus 116 ~~G~~v~~v~~~d-~~l~~~i~----~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~ 186 (393)
T 1n8p_A 116 AHGVETSFTNDLL-NDLPQLIK----ENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYI 186 (393)
T ss_dssp TTCSCCEEESSHH-HHHHHHSC----SSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHH
T ss_pred HcCcEEEEeCCCh-HHHHHhcc----cCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCcccccc
Confidence 3456666666556 77777664 3568888888888889999999999999999 999999999886654
No 378
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=35.98 E-value=30 Score=33.24 Aligned_cols=45 Identities=13% Similarity=0.083 Sum_probs=32.8
Q ss_pred ceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEec
Q psy16848 197 GIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 197 g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~ 241 (514)
.+...+|+++++..++.++.++ +++++. .+...+...|++++.++
T Consensus 89 ~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~ 139 (376)
T 2dou_A 89 EALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIP 139 (376)
T ss_dssp SEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHTTCEEEEEC
T ss_pred cEEEcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHHHHcCCEEEEee
Confidence 6788899999999999999876 566655 33455556676666544
No 379
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=35.92 E-value=27 Score=34.11 Aligned_cols=68 Identities=13% Similarity=0.132 Sum_probs=55.4
Q ss_pred cCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848 120 NSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 120 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
..|.+++.++.+|++++++.+.. ++++|+++.....+|.+.+..++.++++++|+.+.+|+.++.+..
T Consensus 128 ~~g~~~~~v~~~d~~~l~~~i~~----~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~ 195 (392)
T 3qhx_A 128 GWNVEYTPVALADLDAVRAAIRP----TTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPAL 195 (392)
T ss_dssp GGTCEEEEECTTCHHHHHHHCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTT
T ss_pred hcCcEEEEeCCCCHHHHHHhhCC----CCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCccccc
Confidence 44566666777788999888753 567888888777789999999999999999999999999876543
No 380
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=35.90 E-value=20 Score=35.40 Aligned_cols=55 Identities=13% Similarity=0.248 Sum_probs=41.5
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccc---hhHHhhhhhhcCceEEeeccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGL 190 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~ 190 (514)
|.+++++.+.+ +++.+++......+|...+ ..++.++++++|..+.+|+.+....
T Consensus 180 d~~~l~~~l~~----~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~ 237 (427)
T 3dyd_A 180 DLKQLEYLIDE----KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMV 237 (427)
T ss_dssp CHHHHHSSCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCB
T ss_pred CHHHHHHHhcc----CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhc
Confidence 66777666532 4566666665556788888 8899999999999999999887543
No 381
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=35.85 E-value=25 Score=35.39 Aligned_cols=67 Identities=19% Similarity=0.280 Sum_probs=54.4
Q ss_pred cCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848 120 NSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL 190 (514)
Q Consensus 120 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 190 (514)
..|.+++.++..|.+++++.+. .++++++++.....+|.+.+..++.++++++|..+.+|+.|+.|.
T Consensus 194 ~~G~~v~~v~~~d~~~l~~~i~----~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~ 260 (464)
T 1ibj_A 194 RSGVVVKRVNTTKLDEVAAAIG----PQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPV 260 (464)
T ss_dssp GGTCEEEEECTTSHHHHHHHCC----SSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTT
T ss_pred HcCCEEEEeCCCCHHHHHHHhc----cCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccc
Confidence 4456666666668888888774 356888887777778999999999999999999999999998654
No 382
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=35.61 E-value=29 Score=34.32 Aligned_cols=69 Identities=20% Similarity=0.288 Sum_probs=56.4
Q ss_pred hcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848 119 RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 119 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
+..|.+++.++.+|++++++.+.. ++++|+++.....+|.+.+..++.++++++|..+.+|+.++.|..
T Consensus 142 ~~~g~~~~~v~~~d~~~l~~ai~~----~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~ 210 (414)
T 3ndn_A 142 PRWGVQTVFVDGDDLSQWERALSV----PTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLL 210 (414)
T ss_dssp HHTTCEEEEECTTCHHHHHHHTSS----CCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHH
T ss_pred HHcCcEEEEeCCCCHHHHHHhcCC----CCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCccccc
Confidence 344666677777788999888753 578888888777889999999999999999999999999886643
No 383
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=34.48 E-value=39 Score=33.17 Aligned_cols=44 Identities=11% Similarity=0.142 Sum_probs=32.6
Q ss_pred eeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhh-CCCCEEEec
Q psy16848 198 IGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRN-SSAPKIIYR 241 (514)
Q Consensus 198 ~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~-~g~~~~~v~ 241 (514)
++..+|++++++.++.++.++ +++++. .+...+.. .|++++.++
T Consensus 116 i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~ 166 (430)
T 2x5f_A 116 PIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYP 166 (430)
T ss_dssp CEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHTTTTCCEEEEEC
T ss_pred EEEcCCchHHHHHHHHHHhCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEe
Confidence 788899999999999999887 566665 33445555 677666555
No 384
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=34.10 E-value=54 Score=31.62 Aligned_cols=74 Identities=9% Similarity=0.066 Sum_probs=46.3
Q ss_pred eeeecCchhhHHHHHhhccCC--ceeeecc------hHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCC
Q psy16848 198 IGERDGQLHNMDIISGTLVNP--EVAIHAS------MIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269 (514)
Q Consensus 198 ~~~~~G~~~~i~~~~~~l~~~--~v~~~~~------~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~ 269 (514)
++...|+++++..++.+++++ +++++.+ +...+...|++++.++.+
T Consensus 67 v~~~~sgt~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------------------------- 120 (411)
T 3nnk_A 67 MLVDGTSRAGIEAILVSAIRPGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVP-------------------------- 120 (411)
T ss_dssp EEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECC--------------------------
T ss_pred EEECCCcHHHHHHHHHHhcCCCCEEEEecCCchHHHHHHHHHHcCCeEEEEecC--------------------------
Confidence 444556799999999999887 6666542 344455667666655521
Q ss_pred CCCccccCHHHHHHHHHHc-CCEEEEecccc
Q psy16848 270 SMTGAICPLKELCEVSHQH-GALTFVDEVHA 299 (514)
Q Consensus 270 nptG~~~~l~~l~~l~~~~-gv~li~Dea~~ 299 (514)
. +..+++++|.+..+++ -..+++...+.
T Consensus 121 -~-~~~~d~~~l~~~i~~~~~~~v~~~~~~n 149 (411)
T 3nnk_A 121 -W-GEVFTPDQVEDAVKRIRPRLLLTVQGDT 149 (411)
T ss_dssp -T-TCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred -C-CCCCCHHHHHHHHhhCCCeEEEEeCCCC
Confidence 1 2245788888888763 34555554443
No 385
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=33.77 E-value=25 Score=33.11 Aligned_cols=56 Identities=25% Similarity=0.423 Sum_probs=48.1
Q ss_pred CChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848 131 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189 (514)
Q Consensus 131 ~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (514)
.|++++++.+.+. +++++++......+|...|..++.++++++|..+.+|+.|+.|
T Consensus 111 ~d~~~l~~~l~~~---~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~ 166 (353)
T 2yrr_A 111 VDPEAVARALKRR---RYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLG 166 (353)
T ss_dssp CCHHHHHHHHHHS---CCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred CCHHHHHHHHHhC---CCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCcccc
Confidence 3889999988753 5778888877777899999999999999999999999998654
No 386
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=33.75 E-value=53 Score=31.54 Aligned_cols=75 Identities=11% Similarity=0.053 Sum_probs=47.4
Q ss_pred ceeeecCchhhHHHHHhhccCC--ceeeecc-hH-----HHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecC
Q psy16848 197 GIGERDGQLHNMDIISGTLVNP--EVAIHAS-MI-----QGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETV 268 (514)
Q Consensus 197 g~~~~~G~~~~i~~~~~~l~~~--~v~~~~~-~~-----~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~ 268 (514)
.++..+|+++++..++..++++ +++++.+ |. ..+...|++++.++.+
T Consensus 71 ~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~------------------------- 125 (396)
T 2ch1_A 71 TMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGP------------------------- 125 (396)
T ss_dssp EEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECC-------------------------
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCeEEEEcCCcccHHHHHHHHHcCCceEEecCC-------------------------
Confidence 4677889999999999999887 6666652 21 2345566666655421
Q ss_pred CCCCccccCHHHHHHHHHH-cCCEEEEecccc
Q psy16848 269 HSMTGAICPLKELCEVSHQ-HGALTFVDEVHA 299 (514)
Q Consensus 269 ~nptG~~~~l~~l~~l~~~-~gv~li~Dea~~ 299 (514)
+ +...++++|.+.+++ .-..+++...+.
T Consensus 126 --~-~~~~d~~~l~~~l~~~~~~~v~~~~~~n 154 (396)
T 2ch1_A 126 --P-DRPFSLETLARAIELHQPKCLFLTHGDS 154 (396)
T ss_dssp --T-TSCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred --C-CCCCCHHHHHHHHHhCCCCEEEEECCCC
Confidence 1 223568888888776 334555554443
No 387
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=33.68 E-value=69 Score=28.18 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=29.7
Q ss_pred CceEEEEecC-CCCCccccCHHHHHHHHHHcCCEEEE
Q psy16848 259 IPKLVAFETV-HSMTGAICPLKELCEVSHQHGALTFV 294 (514)
Q Consensus 259 ~~~~vv~~~~-~nptG~~~~l~~l~~l~~~~gv~li~ 294 (514)
++.+++.+-+ .|..|....++++.+++++||+.++.
T Consensus 158 ~Pa~vicEiv~~~~dG~mar~~~l~~fA~~h~l~~it 194 (206)
T 3mio_A 158 QPAGAICEIVSQKDEGSMAHTDELRVFADEHGLALIT 194 (206)
T ss_dssp CSBEEEEEBBCSSSTTSBCCHHHHHHHHHHHTCEEEE
T ss_pred CceEEEEEEeeeCCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 3567776663 57889999999999999999999884
No 388
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=33.36 E-value=67 Score=30.54 Aligned_cols=75 Identities=17% Similarity=0.171 Sum_probs=45.7
Q ss_pred ceeeecCchhhHHHHHhhcc---CC--ceeeec-ch-----HHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEE
Q psy16848 197 GIGERDGQLHNMDIISGTLV---NP--EVAIHA-SM-----IQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAF 265 (514)
Q Consensus 197 g~~~~~G~~~~i~~~~~~l~---~~--~v~~~~-~~-----~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~ 265 (514)
.++..+|+++++..++.++. ++ +++++. ++ ...+...|++++.++..
T Consensus 61 ~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~---------------------- 118 (385)
T 2bkw_A 61 PFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPL---------------------- 118 (385)
T ss_dssp EEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCS----------------------
T ss_pred eEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecC----------------------
Confidence 46778899999999999987 66 565653 22 13345566665554420
Q ss_pred ecCCCCCccccCHHHHHHHHHHc-CCEEEEeccc
Q psy16848 266 ETVHSMTGAICPLKELCEVSHQH-GALTFVDEVH 298 (514)
Q Consensus 266 ~~~~nptG~~~~l~~l~~l~~~~-gv~li~Dea~ 298 (514)
... ..+++++|.+.+++. -..+++...+
T Consensus 119 ----~~~-~~~d~~~l~~~l~~~~~~~v~~~~~~ 147 (385)
T 2bkw_A 119 ----KIG-ESVPLELITEKLSQNSYGAVTVTHVD 147 (385)
T ss_dssp ----STT-SCCCHHHHHHHHHHSCCSEEEEESEE
T ss_pred ----CCC-CCCCHHHHHHHHhcCCCCEEEEEccC
Confidence 111 235678888877763 3445554444
No 389
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=32.82 E-value=29 Score=35.24 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=46.4
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL 190 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 190 (514)
|.++|++.+.+ ++++|++......+|.+.++.++.++++++|..+.+|++|+.+.
T Consensus 228 d~~~Le~~i~~----~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~ 282 (514)
T 3mad_A 228 DVAAMREAITP----NTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFI 282 (514)
T ss_dssp CHHHHHHHCCT----TEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred CHHHHHHHhcc----CCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEeccccccc
Confidence 88889888753 56778777776678999999999999999999999999887543
No 390
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=32.82 E-value=30 Score=34.05 Aligned_cols=65 Identities=25% Similarity=0.332 Sum_probs=55.5
Q ss_pred CCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848 122 SAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 122 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
...+..++++|.++|++.+.+.. .+.+.++++.++..+|.+.| +.++.++++++|+.+.+|+.|.
T Consensus 176 ~~~~~~~~~~d~~~le~~l~~~~-~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~ 244 (429)
T 4e77_A 176 AKHTLTCTYNDLASVRQAFEQYP-QEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMT 244 (429)
T ss_dssp GTTEEEECTTCHHHHHHHHHHST-TTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTT
T ss_pred CCceeecCCCCHHHHHHHHHhcC-CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 34566778889999999998643 34678889999998999998 8999999999999999999987
No 391
>1nxi_A Conserved hypothetical protein VC0424; structural genomics, AB sandwich, COG 3076, ATCC NO. 51394D, NESG target OP3, PSI; NMR {Vibrio cholerae} SCOP: d.58.47.1
Probab=32.75 E-value=1.9e+02 Score=23.23 Aligned_cols=91 Identities=12% Similarity=-0.004 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhCCCccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCC--cEEEEEeCCCCCHHHHH
Q psy16848 391 IVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGE--EKIRLAPTPFHTREMID 468 (514)
Q Consensus 391 ~~~~l~~~L~~~g~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~--~~iRl~~~~~~t~e~id 468 (514)
.-..+.+.|.+.|.....+..==+++.+++..+...++..+. +.|..+..........+. -++.++.....+.+.|.
T Consensus 20 ~n~~Vl~~L~e~Gddl~~~r~IEH~~~F~de~~~e~~a~~~~-~~Gy~v~~~~~~e~e~g~~~~~~~i~~~~~l~~~~I~ 98 (132)
T 1nxi_A 20 ETRDIIQALLEDGSDPDALYEIEHHLFAEDFDKLEKAAVEAF-KMGFEVLEAEETEDEDGNKLLCFDATMQSALDAKLID 98 (132)
T ss_dssp HHHHHHHHHHHHTCCTTSCEEEEEEEEESCHHHHHHHHHHHH-HHTCCCBCCCCBCCSSCSSBEEEEEEEEECSCHHHHH
T ss_pred HHHHHHHHHHhCCCCcCCCeEEEEEEEeCCHHHHHHHHHHHH-HCCCEEEecccccCCCCceeEEEEEEEeccCCHHHHH
Confidence 333445555555765433332224456677777888999995 888877522211111121 25666666667888999
Q ss_pred HHHHHHHHHHHHcC
Q psy16848 469 KFVTDLLAVWKSLD 482 (514)
Q Consensus 469 ~~~~~l~~~l~~~~ 482 (514)
.....|.++.++.+
T Consensus 99 ~~~~~L~~lA~~~~ 112 (132)
T 1nxi_A 99 EQVEKLVNLAEKFD 112 (132)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999888765
No 392
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=32.60 E-value=2.6e+02 Score=27.11 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=46.4
Q ss_pred chhhhhhhhcCCCCeeeccC--CChHHHHHHHHhccc-CCCcEEEee-c--cccc-cCCccchhHHhhhhhhcCceEEee
Q psy16848 111 HASMIQGIRNSSAPKIIYRH--NDVNHLTQVLENMDV-KIPKLVAFE-T--VHSM-TGAICPLKELCEVSHQHGALTFVD 183 (514)
Q Consensus 111 h~~~~~~~~~~~~~~~~~~~--~d~~~l~~~l~~~~~-~~~~~~~~~-~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 183 (514)
+..++..+...+.++..=.. .+++++..++..... +.++++.+. | .|+. +..-..+..+..+++..+..|++|
T Consensus 238 n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~~rG~s~yp~~~~~~ldl~~i~~lk~~~~lpV~~D 317 (385)
T 3nvt_A 238 NFELLKAAGRVDKPILLKRGLSATIEEFIGAAEYIMSQGNGKIILCERGIRTYEKATRNTLDISAVPILKKETHLPVMVD 317 (385)
T ss_dssp CHHHHHHHHTSSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEEE
T ss_pred CHHHHHHHHccCCcEEEecCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccccCHHHHHHHHHhcCCCEEEc
Confidence 33444444444444332222 255666655555433 345677766 2 3544 344456777788888889999999
Q ss_pred cccccc
Q psy16848 184 EVHAVG 189 (514)
Q Consensus 184 ~~~~~g 189 (514)
+.|+.|
T Consensus 318 ~th~~G 323 (385)
T 3nvt_A 318 VTHSTG 323 (385)
T ss_dssp HHHHHC
T ss_pred CCCCCC
Confidence 988743
No 393
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=32.39 E-value=63 Score=30.38 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=31.0
Q ss_pred ceeeecCchhhHHHHHhhccCC--ceeeec-c-----hHHHHhhCCCCEEEec
Q psy16848 197 GIGERDGQLHNMDIISGTLVNP--EVAIHA-S-----MIQGIRNSSAPKIIYR 241 (514)
Q Consensus 197 g~~~~~G~~~~i~~~~~~l~~~--~v~~~~-~-----~~~~~~~~g~~~~~v~ 241 (514)
.++..+|+++++..++.++.++ +++++. + +...+...|++++.++
T Consensus 58 ~v~~~~g~t~a~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~ 110 (366)
T 1m32_A 58 SVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYD 110 (366)
T ss_dssp EEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEE
T ss_pred EEEEecChHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHhCCceEEEe
Confidence 4677889999999999999876 555543 2 2233455677766555
No 394
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=32.31 E-value=64 Score=30.75 Aligned_cols=74 Identities=14% Similarity=0.017 Sum_probs=48.6
Q ss_pred eeeecCchhhHHHHHhhccCC--ceeeec-ch-----HHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCC
Q psy16848 198 IGERDGQLHNMDIISGTLVNP--EVAIHA-SM-----IQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269 (514)
Q Consensus 198 ~~~~~G~~~~i~~~~~~l~~~--~v~~~~-~~-----~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~ 269 (514)
+...+|+++++..++.+++++ +++++. .+ ...+...|++++.++.+
T Consensus 77 v~~~~gg~~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------------------------- 130 (393)
T 3kgw_A 77 LVVSGSGHCAMETALFNLLEPGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKK-------------------------- 130 (393)
T ss_dssp EEESCCTTTHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECC--------------------------
T ss_pred EEEeCCcHHHHHHHHHhcCCCCCEEEEEeCCchhHHHHHHHHHcCCceEEEeCC--------------------------
Confidence 566778999999999999887 666654 22 34455667766655521
Q ss_pred CCCccccCHHHHHHHHHH-cCCEEEEecccc
Q psy16848 270 SMTGAICPLKELCEVSHQ-HGALTFVDEVHA 299 (514)
Q Consensus 270 nptG~~~~l~~l~~l~~~-~gv~li~Dea~~ 299 (514)
+.| .+++++|.+..++ .-..+++...+.
T Consensus 131 -~~~-~~d~~~l~~~i~~~~~~~v~~~~~~n 159 (393)
T 3kgw_A 131 -PGE-HYTLQEVEEGLAQHKPVLLFLVHGES 159 (393)
T ss_dssp -TTC-CCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred -CCC-CCCHHHHHHHHhhCCCcEEEEeccCC
Confidence 112 4578888888887 334555655554
No 395
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=32.27 E-value=1.6e+02 Score=28.59 Aligned_cols=56 Identities=21% Similarity=0.320 Sum_probs=47.5
Q ss_pred ChHHHHHHHHhcccCCCcEEEeecccc-ccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHS-MTGAICP----LKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
|.++|++.+.+....+.++++++.... .+|...+ +.++.++++++|..+.+|+.+.
T Consensus 175 ~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~ 235 (430)
T 3i4j_A 175 DAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMS 235 (430)
T ss_dssp HHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTT
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhh
Confidence 458999999875445567889999888 8888888 8899999999999999999886
No 396
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=32.26 E-value=37 Score=33.70 Aligned_cols=63 Identities=22% Similarity=0.295 Sum_probs=50.7
Q ss_pred CCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCcc----chhHHhhhhhhcCceEEeecccccc
Q psy16848 123 APKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC----PLKELCEVSHQHGALTFVDEVHAVG 189 (514)
Q Consensus 123 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g 189 (514)
..+..++.+|.++|++.+.. .+.+.++++.++..+|.+. ++.++.++++++|+.+.+|+.| .|
T Consensus 202 ~~v~~~~~~d~~~le~~l~~---~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~-~g 268 (439)
T 2oat_A 202 PGFDIIPYNDLPALERALQD---PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQ-TG 268 (439)
T ss_dssp TTEEEECSSCHHHHHHHTTS---TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTT-TT
T ss_pred CCeEEeCCCCHHHHHHHhCC---CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc-cC
Confidence 34455666799999998862 3467888888887778766 7999999999999999999999 45
No 397
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=31.68 E-value=32 Score=33.29 Aligned_cols=53 Identities=13% Similarity=0.255 Sum_probs=43.0
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
|+++|++.+.. +++.+++.. .+|.+.+..++.++++++|..+.+|++|+.|..
T Consensus 117 d~~~l~~~i~~----~~~~v~~~~---~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~ 169 (390)
T 3b8x_A 117 DIESLKEAVTD----STKAILTVN---LLGNPNNFDEINKIIGGRDIILLEDNCESMGAT 169 (390)
T ss_dssp CHHHHHHHCCT----TEEEEEEEC---GGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCE
T ss_pred CHHHHHHHhCc----CCeEEEEEC---CccChhhHHHHHHHHHHcCCEEEEECcCcccCE
Confidence 78888887743 456666542 568899999999999999999999999997754
No 398
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=31.55 E-value=36 Score=33.73 Aligned_cols=57 Identities=30% Similarity=0.409 Sum_probs=47.4
Q ss_pred hHHHHHHHHhcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc-cc
Q psy16848 133 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VG 189 (514)
Q Consensus 133 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~g 189 (514)
.++|++.+.+....+.++++++.++..+|.+.| +.++.++++++|..+.+|+.|. .|
T Consensus 205 ~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g 266 (449)
T 3a8u_X 205 ADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFG 266 (449)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCcc
Confidence 888999887653335578888888777898888 9999999999999999999984 44
No 399
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=31.42 E-value=27 Score=25.91 Aligned_cols=22 Identities=9% Similarity=-0.034 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCEEEEecccc
Q psy16848 278 LKELCEVSHQHGALTFVDEVHA 299 (514)
Q Consensus 278 l~~l~~l~~~~gv~li~Dea~~ 299 (514)
-.+|+++++++|++++.|-.-.
T Consensus 29 A~~I~~~A~e~~VPi~e~~~LA 50 (83)
T 3bzy_B 29 ALQIIKLAELYDIPVIEDIPLA 50 (83)
T ss_dssp HHHHHHHHHHTTCCEEECHHHH
T ss_pred HHHHHHHHHHcCCCEEeCHHHH
Confidence 4899999999999999998655
No 400
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=30.98 E-value=43 Score=32.60 Aligned_cols=46 Identities=11% Similarity=0.188 Sum_probs=34.4
Q ss_pred CceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEec
Q psy16848 196 AGIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 196 ~g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~ 241 (514)
..|...+|+++++..++.++.++ +++++. .+...+...|++++.++
T Consensus 110 ~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~ 161 (404)
T 2o1b_A 110 DEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLN 161 (404)
T ss_dssp TSEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEE
T ss_pred ccEEEcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHCCCEEEEec
Confidence 46788899999999999999877 566554 44556666777766655
No 401
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=30.90 E-value=34 Score=33.70 Aligned_cols=65 Identities=32% Similarity=0.413 Sum_probs=54.0
Q ss_pred CeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeeccccccc
Q psy16848 124 PKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGL 190 (514)
Q Consensus 124 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~ 190 (514)
.+..++.+|.++|++.+.+.. .+.+.|+++.++..+|.+.| +.++.++++++|+.+.+|+.++ |.
T Consensus 181 ~~~~~~~~d~~~le~~l~~~~-~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~ 249 (434)
T 2epj_A 181 LTLVTPYNDVEALERVFAEYG-DRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVT-GF 249 (434)
T ss_dssp TEEEEETTCHHHHHHHHHHHG-GGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTT-TT
T ss_pred ceEecCCCCHHHHHHHHHhCC-CCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchh-ce
Confidence 455566679999999998642 35678899988887899888 9999999999999999999998 54
No 402
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=30.69 E-value=39 Score=33.75 Aligned_cols=68 Identities=19% Similarity=0.206 Sum_probs=56.9
Q ss_pred cCCCCeeeccCCChHHHHHHHHhcccCCC-cEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848 120 NSSAPKIIYRHNDVNHLTQVLENMDVKIP-KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 120 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
..|.+++.++.+|++++++.+.. ++ ++|.++.....+|.+.+..++.++++++|+.+.+|+.++.+..
T Consensus 176 ~~G~~v~~v~~~d~~~l~~ai~~----~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~ 244 (445)
T 1qgn_A 176 KMGITATVIDPADVGALELALNQ----KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLN 244 (445)
T ss_dssp GGTCEEEEECSSCHHHHHHHHHH----SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT
T ss_pred HcCCEEEEeCCCCHHHHHHHhcc----CCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCccccc
Confidence 44666677777799999998874 35 8888888777789999999999999999999999999987654
No 403
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=29.85 E-value=45 Score=32.10 Aligned_cols=45 Identities=11% Similarity=-0.037 Sum_probs=33.0
Q ss_pred ceeeecCchhhHHHHHhhccCC-------ceeeec----chHHHHhhCCCCEEEec
Q psy16848 197 GIGERDGQLHNMDIISGTLVNP-------EVAIHA----SMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 197 g~~~~~G~~~~i~~~~~~l~~~-------~v~~~~----~~~~~~~~~g~~~~~v~ 241 (514)
.++.++|+++++..++..+.++ +++++. .+...+...|++++.++
T Consensus 93 ~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~ 148 (396)
T 3jtx_A 93 EILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFAN 148 (396)
T ss_dssp SEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEE
T ss_pred eEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEee
Confidence 6888999999999999999876 355543 34455666777766655
No 404
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=29.81 E-value=36 Score=33.85 Aligned_cols=55 Identities=16% Similarity=0.171 Sum_probs=46.2
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
+.++|++.+.+. ..+.++|+++.+...+|...+ +.++.++++++|..+.+|+.|+
T Consensus 217 ~~~~le~~i~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~ 275 (449)
T 2cjg_A 217 ALRQARAAFETR-PHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQT 275 (449)
T ss_dssp HHHHHHHHHHHS-TTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred HHHHHHHHHHhc-CCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEecccc
Confidence 567788888754 245688899988878898888 8999999999999999999997
No 405
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=29.65 E-value=42 Score=31.98 Aligned_cols=46 Identities=13% Similarity=0.031 Sum_probs=34.4
Q ss_pred CCCcEEEeeccccccCCccc---hhHHhhhhhhcCceEEeecccccccc
Q psy16848 146 KIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
.+++++++.....-+|.+.| ..++.++++++|..+.+|+.|+.+..
T Consensus 145 ~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~ 193 (364)
T 1lc5_A 145 PDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIP 193 (364)
T ss_dssp TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGST
T ss_pred CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhcc
Confidence 34666666544334677877 78888999999999999999886544
No 406
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=28.90 E-value=45 Score=33.94 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=51.4
Q ss_pred ChHHHHHHHHhccc--CCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848 132 DVNHLTQVLENMDV--KIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 132 d~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
|+++|++.|.+... .+|++++.......+|.+.|+.++.++++++|+.+.+|.+|+.|..
T Consensus 231 d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~~~ 292 (511)
T 3vp6_A 231 IPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLL 292 (511)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGG
T ss_pred CHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEccchhhHh
Confidence 89999999976532 3377888888888889999999999999999999999998887655
No 407
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=28.45 E-value=1.2e+02 Score=19.59 Aligned_cols=29 Identities=28% Similarity=0.499 Sum_probs=25.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848 453 KIRLAPTPFHTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 453 ~iRl~~~~~~t~e~id~~~~~l~~~l~~~~ 482 (514)
.+|++++ .-|..+.+++...+-+++.+++
T Consensus 3 rvrisit-artkkeaekfaailikvfaelg 31 (62)
T 2gjh_A 3 RVRISIT-ARTKKEAEKFAAILIKVFAELG 31 (62)
T ss_dssp EEEEEEE-CSSHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEEE-ecchhHHHHHHHHHHHHHHHhC
Confidence 5789987 4678999999999999999876
No 408
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=28.28 E-value=47 Score=32.97 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=43.0
Q ss_pred CChHHHHHHHHhcccCCCcEEEeecccccc-CCcc---chhHHhhhhhhcCceEEeeccccc
Q psy16848 131 NDVNHLTQVLENMDVKIPKLVAFETVHSMT-GAIC---PLKELCEVSHQHGALTFVDEVHAV 188 (514)
Q Consensus 131 ~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 188 (514)
.|+++|++.+.+....+.+.|+++....-+ |.+. ++.++.++++++|..+.+|++|..
T Consensus 167 ~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~ 228 (467)
T 1ax4_A 167 FDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFC 228 (467)
T ss_dssp BCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHH
T ss_pred cCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhh
Confidence 389999999986532346777777655333 5554 457899999999999999987664
No 409
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=27.48 E-value=44 Score=32.78 Aligned_cols=46 Identities=13% Similarity=-0.000 Sum_probs=32.5
Q ss_pred CceeeecCchhhH--HHHHhhccC--C------------ceeeec----chHHHHhhCCCCEEEec
Q psy16848 196 AGIGERDGQLHNM--DIISGTLVN--P------------EVAIHA----SMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 196 ~g~~~~~G~~~~i--~~~~~~l~~--~------------~v~~~~----~~~~~~~~~g~~~~~v~ 241 (514)
..|+.++|+++++ +.++..+.+ | +++++. .+...+...|++++.++
T Consensus 96 ~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~v~ 161 (427)
T 3ppl_A 96 EQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISVP 161 (427)
T ss_dssp GGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEEEE
T ss_pred ceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEEeC
Confidence 4688889999999 578877765 2 555554 44566677777777655
No 410
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=27.40 E-value=55 Score=35.29 Aligned_cols=45 Identities=16% Similarity=0.094 Sum_probs=33.5
Q ss_pred ceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEec
Q psy16848 197 GIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 197 g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~ 241 (514)
.+...+|+++++..++.+++++ .++++. ++...+...|+++++++
T Consensus 223 ~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~ 273 (755)
T 2vyc_A 223 SWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMV 273 (755)
T ss_dssp EEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHHCCEEEEEC
T ss_pred eEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEe
Confidence 4667889999999999999987 566654 44555667777766655
No 411
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=27.15 E-value=38 Score=33.65 Aligned_cols=69 Identities=14% Similarity=0.138 Sum_probs=55.4
Q ss_pred CCCCeeeccC----CChHHHHHHHHhcccCCCcEEEeec----cccccCCccchhHHhhhhhh--cCceEEeeccccccc
Q psy16848 121 SSAPKIIYRH----NDVNHLTQVLENMDVKIPKLVAFET----VHSMTGAICPLKELCEVSHQ--HGALTFVDEVHAVGL 190 (514)
Q Consensus 121 ~~~~~~~~~~----~d~~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~ 190 (514)
.|.+++.++. .|++++++.+.+. .++++|.++. .+..+|.+.+..++.+++++ +|+.+.+|++|+.++
T Consensus 148 ~G~~~~~v~~~~~~~d~e~l~~~i~~~--~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~ 225 (427)
T 3hvy_A 148 YGVKYKMVDLKDGKVDINTVKEELKKD--DSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFV 225 (427)
T ss_dssp GTCEEEECCCBTTBCCHHHHHHHHHHC--TTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTT
T ss_pred cCCEEEEecCCCCCcCHHHHHHHhhCC--CCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccccc
Confidence 4555555554 6899999998752 3578999888 55677899999999999999 899999999998776
Q ss_pred c
Q psy16848 191 Y 191 (514)
Q Consensus 191 ~ 191 (514)
.
T Consensus 226 ~ 226 (427)
T 3hvy_A 226 E 226 (427)
T ss_dssp S
T ss_pred c
Confidence 3
No 412
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=27.03 E-value=1e+02 Score=27.41 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=28.7
Q ss_pred CceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEE
Q psy16848 259 IPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFV 294 (514)
Q Consensus 259 ~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~ 294 (514)
.+.+++.+-. |..|.....+++.+++++||+.+|.
T Consensus 167 ~Pa~vicEi~-~~dG~mar~~~l~~fA~~h~l~~it 201 (217)
T 1g57_A 167 KPAGVLCELT-NDDGTMARAPECIEFANKHNMALVT 201 (217)
T ss_dssp CSCEEEEEBB-CTTSSBCCHHHHHHHHHHTTCEEEE
T ss_pred CceEEEEEEe-CCCCCccCHHHHHHHHHHcCCCEEE
Confidence 3566666654 7789999999999999999998884
No 413
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=26.72 E-value=53 Score=32.43 Aligned_cols=61 Identities=18% Similarity=0.197 Sum_probs=49.5
Q ss_pred CeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCcc----chhHHhhhhhhcCceEEeecccc
Q psy16848 124 PKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC----PLKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 124 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
.+..++.+|+++|++.+. ..+++.++++.++..+|.+. ++.++.++++++|+.+.+|+.+.
T Consensus 192 ~v~~~~~~d~~~le~~l~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~ 256 (433)
T 1z7d_A 192 QFSKVPYDDLEALEEELK---DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT 256 (433)
T ss_dssp CEEEECTTCHHHHHHHHT---STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred CeEEeCCCCHHHHHHHhC---CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCcc
Confidence 445566679999999986 23567888888877778765 78899999999999999999995
No 414
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=26.12 E-value=42 Score=32.88 Aligned_cols=46 Identities=4% Similarity=-0.192 Sum_probs=33.9
Q ss_pred CceeeecCchhhHHHHHhhcc--CC-c---eeeec----chHHHHhhCCCCEEEec
Q psy16848 196 AGIGERDGQLHNMDIISGTLV--NP-E---VAIHA----SMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 196 ~g~~~~~G~~~~i~~~~~~l~--~~-~---v~~~~----~~~~~~~~~g~~~~~v~ 241 (514)
..++.++|+++++..++.++. ++ + ++++. .+...+...|++++.++
T Consensus 106 ~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~ 161 (437)
T 3g0t_A 106 RACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFD 161 (437)
T ss_dssp GGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEE
T ss_pred ccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEe
Confidence 457788899999999999998 65 3 55554 44556667777777666
No 415
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=25.67 E-value=57 Score=31.81 Aligned_cols=46 Identities=2% Similarity=0.041 Sum_probs=31.8
Q ss_pred CceeeecCchhhHH--HHHhhccC--C-----------ceeeec----chHHHHhhCCCCEEEec
Q psy16848 196 AGIGERDGQLHNMD--IISGTLVN--P-----------EVAIHA----SMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 196 ~g~~~~~G~~~~i~--~~~~~l~~--~-----------~v~~~~----~~~~~~~~~g~~~~~v~ 241 (514)
..|+.++|+++++. .++.++.+ | +++++. .+...+...|++++.++
T Consensus 88 ~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 152 (423)
T 3ez1_A 88 ENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVD 152 (423)
T ss_dssp GGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEE
T ss_pred hhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEecc
Confidence 46788899999997 88888766 4 455544 34455666777766655
No 416
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=25.64 E-value=39 Score=25.66 Aligned_cols=22 Identities=18% Similarity=0.064 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCEEEEecccc
Q psy16848 278 LKELCEVSHQHGALTFVDEVHA 299 (514)
Q Consensus 278 l~~l~~l~~~~gv~li~Dea~~ 299 (514)
-.+|+++++++|++++.|-.-.
T Consensus 29 A~~I~e~A~e~gVPi~e~~~LA 50 (93)
T 2vt1_B 29 ALAVRKYANEVGIPTVRDVKLA 50 (93)
T ss_dssp HHHHHHHHHHTTCCEEECHHHH
T ss_pred HHHHHHHHHHcCCCEEECHHHH
Confidence 4899999999999999997655
No 417
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=25.59 E-value=39 Score=32.46 Aligned_cols=56 Identities=25% Similarity=0.375 Sum_probs=47.4
Q ss_pred CChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848 131 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189 (514)
Q Consensus 131 ~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (514)
.|++++++.+.+. ++++|++......+|.+.|..++.++++++|..+.+|+.|+.|
T Consensus 131 ~d~~~l~~~i~~~---~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~ 186 (393)
T 2huf_A 131 LSLDEIRDALLIH---KPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLG 186 (393)
T ss_dssp CCHHHHHHHHHHH---CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBT
T ss_pred CCHHHHHHHHhcc---CCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccC
Confidence 3789999888653 4678888777667799999999999999999999999998755
No 418
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=25.55 E-value=54 Score=32.09 Aligned_cols=56 Identities=21% Similarity=0.328 Sum_probs=44.2
Q ss_pred ChHHHH-HHHHhccc-CCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848 132 DVNHLT-QVLENMDV-KIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 132 d~~~l~-~~l~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
|.++|+ +.+.+... .+.++++++.+...+|...+ +.++.++++++|..+.+|+.|.
T Consensus 195 ~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~ 256 (419)
T 2eo5_A 195 VIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQM 256 (419)
T ss_dssp HHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTT
T ss_pred HHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 467888 77765321 24568888887777898777 8889999999999999999986
No 419
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=25.32 E-value=49 Score=32.24 Aligned_cols=56 Identities=18% Similarity=0.345 Sum_probs=45.8
Q ss_pred ChHHHHHHHHhcc-cCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848 132 DVNHLTQVLENMD-VKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 132 d~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
|.++|++.+.+.. ..++++|+++..++.+|...+ ..++.++++++|..+.+|+.|+
T Consensus 183 d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~ 243 (426)
T 1sff_A 183 AIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQS 243 (426)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred HHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhh
Confidence 6788888886421 134678888887777898888 9999999999999999999998
No 420
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=25.14 E-value=38 Score=25.93 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCEEEEecccc
Q psy16848 278 LKELCEVSHQHGALTFVDEVHA 299 (514)
Q Consensus 278 l~~l~~l~~~~gv~li~Dea~~ 299 (514)
-.+|+++++++|++++.|..-.
T Consensus 44 A~~I~~~A~e~gVPi~e~~~LA 65 (97)
T 3t7y_A 44 AKRIIAEAEKYGVPIMRNVPLA 65 (97)
T ss_dssp HHHHHHHHHHHTCCEEECHHHH
T ss_pred HHHHHHHHHHcCCeEEECHHHH
Confidence 4899999999999999998754
No 421
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=24.59 E-value=59 Score=31.80 Aligned_cols=64 Identities=31% Similarity=0.456 Sum_probs=52.7
Q ss_pred CeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeeccccccc
Q psy16848 124 PKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGL 190 (514)
Q Consensus 124 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~ 190 (514)
.++.++.+|.++|++.+.+.. .+++.++++.++..+|.+.| +.++.++ +++|..+.+|+.|. |.
T Consensus 177 ~~~~~~~~d~~~le~~l~~~~-~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~-g~ 244 (424)
T 2e7u_A 177 LTLVLEYNDPEGLREVLKRRG-EEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMT-GF 244 (424)
T ss_dssp TEEEECTTCHHHHHHHHHHHG-GGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTT-TT
T ss_pred ceEeCCCCCHHHHHHHHHhCC-CCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcc-cc
Confidence 455566679999999997542 34678889998888898888 8999999 99999999999998 55
No 422
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=24.42 E-value=40 Score=25.87 Aligned_cols=22 Identities=18% Similarity=0.090 Sum_probs=19.5
Q ss_pred HHHHHHHHHHcCCEEEEecccc
Q psy16848 278 LKELCEVSHQHGALTFVDEVHA 299 (514)
Q Consensus 278 l~~l~~l~~~~gv~li~Dea~~ 299 (514)
-.+|+++++++|++++.|-.-.
T Consensus 29 A~~I~e~A~e~gVPi~e~~~LA 50 (98)
T 3c01_E 29 ALAVRAYAEKVGVPVIVDIKLA 50 (98)
T ss_dssp HHHHHHHHHHHTCCEEECHHHH
T ss_pred HHHHHHHHHHcCCCeecCHHHH
Confidence 4899999999999999997655
No 423
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=24.34 E-value=62 Score=31.26 Aligned_cols=46 Identities=22% Similarity=0.135 Sum_probs=35.6
Q ss_pred CceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEec
Q psy16848 196 AGIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 196 ~g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~ 241 (514)
..|...+|+++++..++..+.++ +++++. .+...+...|.+++.++
T Consensus 86 ~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~ 137 (410)
T 3e2y_A 86 EEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIP 137 (410)
T ss_dssp TSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEE
T ss_pred CCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEe
Confidence 56888899999999999999887 566554 45666677788777665
No 424
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=23.94 E-value=83 Score=31.08 Aligned_cols=78 Identities=12% Similarity=-0.015 Sum_probs=49.7
Q ss_pred Cceee--ecCchhhHHH--HHhhccCC--ceeeec----chHHHHh----hCCCCEEEecCCChhHHHHHHhhccCCCce
Q psy16848 196 AGIGE--RDGQLHNMDI--ISGTLVNP--EVAIHA----SMIQGIR----NSSAPKIIYRHNDVNHLTQVLENMDVKIPK 261 (514)
Q Consensus 196 ~g~~~--~~G~~~~i~~--~~~~l~~~--~v~~~~----~~~~~~~----~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~ 261 (514)
..|.. ..|+++++.+ .+.+++++ +++++. .+...+. ..|++++.++..+
T Consensus 118 ~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~----------------- 180 (448)
T 3meb_A 118 GRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLR----------------- 180 (448)
T ss_dssp TCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBC-----------------
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccc-----------------
Confidence 45666 8899999988 55667766 666665 4455566 7788777766311
Q ss_pred EEEEecCCCCC-ccccCHHHHHHHHHHc--CC-EEEEecccc
Q psy16848 262 LVAFETVHSMT-GAICPLKELCEVSHQH--GA-LTFVDEVHA 299 (514)
Q Consensus 262 ~vv~~~~~npt-G~~~~l~~l~~l~~~~--gv-~li~Dea~~ 299 (514)
+. +..++++++.+.++++ +. ++++-..+.
T Consensus 181 ---------~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~N 213 (448)
T 3meb_A 181 ---------KDGELEIDFSNTKKDIQSAPEKSIFLFHACAHN 213 (448)
T ss_dssp ---------TTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCT
T ss_pred ---------cccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCC
Confidence 11 3445788888888763 34 444445443
No 425
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=23.87 E-value=63 Score=32.45 Aligned_cols=43 Identities=21% Similarity=0.133 Sum_probs=35.0
Q ss_pred CcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848 148 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL 190 (514)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 190 (514)
|.+++.......+|.+.|+.++.++++++|..+.+|.+|+.+.
T Consensus 242 ~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g~~~ 284 (481)
T 4e1o_A 242 PVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTA 284 (481)
T ss_dssp EEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGG
T ss_pred cEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhHHHH
Confidence 3445555555667999999999999999999999999887653
No 426
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=23.78 E-value=60 Score=32.28 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=33.0
Q ss_pred CCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccc
Q psy16848 147 IPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAV 188 (514)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (514)
+++.+++... ..+|.+.+..++.++++++|..+.+|++|+.
T Consensus 146 ~~~~v~~~~~-n~~G~~~~l~~I~~l~~~~~~~livDea~~~ 186 (446)
T 2x3l_A 146 GHKLVVLTYP-NYYGETFNVEEVIKSLHQLNIPVLIDEAHGA 186 (446)
T ss_dssp -CCEEEEESS-CTTSCCCCHHHHHHHHHHTTCCEEEECTTCT
T ss_pred CceEEEEECC-CCCeEecCHHHHHHHHHhcCCeEEEcchhhh
Confidence 4566665552 2379999999999999999999999999875
No 427
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=23.47 E-value=63 Score=31.35 Aligned_cols=57 Identities=18% Similarity=0.282 Sum_probs=44.0
Q ss_pred CChHHHHHHHHhcccCCCcEEEeeccccccCCccch---hHHhhhhhhcCceEEeecccccccc
Q psy16848 131 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL---KELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 131 ~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
.|+++|++.+. .+++++++......+|...|. .++.++++++|..+.+|+.++.+..
T Consensus 148 ~d~~~l~~~l~----~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~ 207 (411)
T 2o0r_A 148 LDADALRRAVT----PRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVF 207 (411)
T ss_dssp CCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBC
T ss_pred CCHHHHHHhhc----cCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence 37888888774 256777777655567887765 7888899999999999999986554
No 428
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=23.11 E-value=50 Score=32.52 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=41.9
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
|++++++.+.. ++++|++.. .+|.+.+..++.++++++|..+.+|++|+.|..
T Consensus 147 d~~~l~~~i~~----~~~~v~~~~---~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~ 199 (437)
T 3bb8_A 147 NASLIEAAVSD----KTKAIMIAH---TLGNLFDLAEVRRVADKYNLWLIEDCCDALGST 199 (437)
T ss_dssp CGGGHHHHCCT----TEEEEEEEC---GGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCE
T ss_pred CHHHHHHhcCC----CCeEEEEeC---CCCChhcHHHHHHHHHHcCCEEEEECccccCce
Confidence 67788777642 456665533 468889999999999999999999999987754
No 429
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=23.03 E-value=58 Score=31.57 Aligned_cols=56 Identities=20% Similarity=0.328 Sum_probs=43.9
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccc---hhHHhhhhhhcCceEEeecccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
|+++|++.+.+ +++++++......+|.+.| ..++.++++++|..+.+|+.++.+.+
T Consensus 163 d~~~l~~~l~~----~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~ 221 (406)
T 1xi9_A 163 DIDDIRKKITD----RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTY 221 (406)
T ss_dssp CHHHHHHHCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBS
T ss_pred CHHHHHHhhCc----CceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCcccccc
Confidence 78888887753 4677777765556787766 88888999999999999999886554
No 430
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=22.97 E-value=72 Score=31.98 Aligned_cols=43 Identities=21% Similarity=0.112 Sum_probs=34.3
Q ss_pred CcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848 148 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL 190 (514)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 190 (514)
|.++++......+|.+.|..++.++++++|..+.+|.+|+.|.
T Consensus 235 ~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A~~~~~ 277 (475)
T 3k40_A 235 PFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSA 277 (475)
T ss_dssp EEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGG
T ss_pred cEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeHHhHHHH
Confidence 3445555444567999999999999999999999999887653
No 431
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=22.70 E-value=52 Score=31.32 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=37.4
Q ss_pred ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhh--cCceEEeecccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ--HGALTFVDEVHAVG 189 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g 189 (514)
|.+++++.+. +++++++.....-+|.+.|..++.++++. +|..+.+|+.+...
T Consensus 136 d~~~l~~~i~-----~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~ 190 (356)
T 1fg7_A 136 DLQGISDKLD-----GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEF 190 (356)
T ss_dssp CHHHHHTSCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGG
T ss_pred CHHHHHHHhc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCCEEEEEccchhh
Confidence 6777766553 46777776443456888887777766655 89999999988743
No 432
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=22.63 E-value=48 Score=32.92 Aligned_cols=68 Identities=13% Similarity=0.106 Sum_probs=54.2
Q ss_pred CCCCeeeccC-----CChHHHHHHHHhcccCCCcEEEeec----cccccCCccchhHHhhhhhh--cCceEEeecccccc
Q psy16848 121 SSAPKIIYRH-----NDVNHLTQVLENMDVKIPKLVAFET----VHSMTGAICPLKELCEVSHQ--HGALTFVDEVHAVG 189 (514)
Q Consensus 121 ~~~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g 189 (514)
.|.+++.++. .|++++++.+.+. .++++|.++. ....+|.+.+..++.+++++ +|+.+.+|++|+.+
T Consensus 147 ~G~~~~~v~~~~~g~~D~e~l~~~l~~~--~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~ 224 (427)
T 3i16_A 147 FGINYKQVDLKEDGKPNLEEIEKVLKED--ESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEF 224 (427)
T ss_dssp GTCEEEECCCCTTSSCCHHHHHHHHHTC--TTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTT
T ss_pred cCCEEEEecCccCCCcCHHHHHHHhhCC--CCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCccc
Confidence 3555555544 4889999988752 3578888888 55677999999999999999 99999999998877
Q ss_pred c
Q psy16848 190 L 190 (514)
Q Consensus 190 ~ 190 (514)
+
T Consensus 225 ~ 225 (427)
T 3i16_A 225 M 225 (427)
T ss_dssp S
T ss_pred c
Confidence 6
No 433
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=22.13 E-value=35 Score=33.88 Aligned_cols=64 Identities=30% Similarity=0.376 Sum_probs=52.3
Q ss_pred eeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeeccccccc
Q psy16848 125 KIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGL 190 (514)
Q Consensus 125 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~ 190 (514)
+..++.+|.++|++.+.+.. .+.+.++++.++..+|.+.| +.++.++++++|..+.+|+.|. |.
T Consensus 180 ~~~~~~~d~~~le~~l~~~~-~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~ 247 (453)
T 2cy8_A 180 TLLIRPDDIEGMREVFANHG-SDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVIS-GF 247 (453)
T ss_dssp EEEECTTCHHHHHHHHHHHG-GGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT-TT
T ss_pred eeecCCCCHHHHHHHHHhcC-CCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc-cc
Confidence 44555679999999998642 34678888888777898888 9999999999999999999997 55
No 434
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=21.85 E-value=59 Score=31.84 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=46.6
Q ss_pred CCChHHHHHHHHhcccCCCcEEEeecc-ccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848 130 HNDVNHLTQVLENMDVKIPKLVAFETV-HSMTGAICP----LKELCEVSHQHGALTFVDEVHA 187 (514)
Q Consensus 130 ~~d~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
+.|.++|++.+.+.. .+.++++++.+ ...+|.+.| +.++.++++++|..+.+|+.|.
T Consensus 188 ~~d~~~l~~~l~~~~-~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~ 249 (429)
T 1s0a_A 188 ERDMVGFARLMAAHR-HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIAT 249 (429)
T ss_dssp GGGGHHHHHHHHHHT-TTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred HHHHHHHHHHHHhCC-CCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhh
Confidence 357899999887532 34578889988 556898777 8899999999999999999986
No 435
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=21.76 E-value=1.6e+02 Score=24.24 Aligned_cols=53 Identities=11% Similarity=0.228 Sum_probs=35.5
Q ss_pred ChhHHHHHHhhccCCCceEEEEecCCCCCccccC-H---HHHH-HHHHHcCCEE-EEecccc
Q psy16848 244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP-L---KELC-EVSHQHGALT-FVDEVHA 299 (514)
Q Consensus 244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~-l---~~l~-~l~~~~gv~l-i~Dea~~ 299 (514)
+++.+.+.+++. ++..+++.-|.|..|..-+ . +..+ .++++.++.+ .+||.++
T Consensus 43 ~~~~l~~li~~~---~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~T 101 (150)
T 1vhx_A 43 GLSRLSELIKDY---TIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLT 101 (150)
T ss_dssp CHHHHHHHHTTS---EEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSC
T ss_pred HHHHHHHHHHHc---CCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCCC
Confidence 456666666553 4678999988888887755 2 3333 4455567764 4799987
No 436
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=21.43 E-value=98 Score=24.55 Aligned_cols=56 Identities=13% Similarity=0.147 Sum_probs=37.1
Q ss_pred CCCEEEecCCChhHHHHHHhhccCC------CceEEE-EecCCCCCccccCHHHHHHHHHHcCCEEE
Q psy16848 234 SAPKIIYRHNDVNHLTQVLENMDVK------IPKLVA-FETVHSMTGAICPLKELCEVSHQHGALTF 293 (514)
Q Consensus 234 g~~~~~v~~~d~~~l~~~l~~~~~~------~~~~vv-~~~~~nptG~~~~l~~l~~l~~~~gv~li 293 (514)
+..+...+..|++.+.+.|++.... +..+|+ +.... ...++.+|.++++++|+.+|
T Consensus 16 ~l~vl~l~~~d~~~l~~~L~~ki~~aP~FF~~aPVVlDl~~l~----~~~dl~~L~~~l~~~gl~~v 78 (120)
T 3ghf_A 16 TLSVVHLHEAEPEVIRQALEDKIAQAPAFLKHAPVVINVSGLE----SPVNWPELHKIVTSTGLRII 78 (120)
T ss_dssp CCEEEEEESCCHHHHHHHHHHHHHHSHHHHTTCEEEEEEEECC----SSCCHHHHHHHHHTTTCEEE
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHhChHhhCCCcEEEEccccC----ChHHHHHHHHHHHHcCCEEE
Confidence 4456666688888888887765321 222332 33332 23579999999999999986
No 437
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=21.34 E-value=68 Score=30.09 Aligned_cols=29 Identities=7% Similarity=0.035 Sum_probs=22.7
Q ss_pred ceeeecCchhhHHHHHhhccCC--ceeeecc
Q psy16848 197 GIGERDGQLHNMDIISGTLVNP--EVAIHAS 225 (514)
Q Consensus 197 g~~~~~G~~~~i~~~~~~l~~~--~v~~~~~ 225 (514)
.++...|+++++..++..+.++ +++++.+
T Consensus 61 ~v~~~~~gt~a~~~al~~~~~~gd~vi~~~~ 91 (356)
T 1v72_A 61 EVFLVPTGTAANALCLSAMTPPWGNIYCHPA 91 (356)
T ss_dssp EEEEESCHHHHHHHHHHTSCCTTEEEEECTT
T ss_pred cEEEeCCccHHHHHHHHHhcCCCCEEEEcCc
Confidence 3566778899999999999887 6676663
No 438
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=21.23 E-value=1.8e+02 Score=20.77 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=26.1
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848 451 EEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD 482 (514)
Q Consensus 451 ~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~ 482 (514)
...+|++++ ..|..+.+++...+-+++.+++
T Consensus 45 akrvrisit-artkkeaekfaailikvfaelg 75 (106)
T 1qys_A 45 AKRVRISIT-ARTKKEAEKFAAILIKVFAELG 75 (106)
T ss_dssp CSEEEEEEE-CSSHHHHHHHHHHHHHHHHHTT
T ss_pred CcEEEEEEE-ecchhHHHHHHHHHHHHHHHhC
Confidence 347899997 5678999999999999998876
No 439
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=20.71 E-value=87 Score=30.30 Aligned_cols=45 Identities=24% Similarity=0.387 Sum_probs=33.4
Q ss_pred CCcEEEeeccccccCCccc---hhHHhhhhhhcCceEEeecccccccc
Q psy16848 147 IPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY 191 (514)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (514)
+++.+++......+|.+.| ..++.++++++|..+.+|+.++.+..
T Consensus 174 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~ 221 (409)
T 2gb3_A 174 RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVF 221 (409)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBC
T ss_pred CCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECccccccc
Confidence 4566666654434576644 68888899999999999999987654
No 440
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=20.60 E-value=45 Score=32.18 Aligned_cols=54 Identities=13% Similarity=0.268 Sum_probs=41.8
Q ss_pred ChHHHHHHHHhcccCCCcE-EEeeccccccC-CccchhHHhhhhhhcCceEEeeccccccc
Q psy16848 132 DVNHLTQVLENMDVKIPKL-VAFETVHSMTG-AICPLKELCEVSHQHGALTFVDEVHAVGL 190 (514)
Q Consensus 132 d~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 190 (514)
|++++++. ..++++ |++++....+| ...+..++.++++++|..+.+|+.|..+.
T Consensus 130 d~~~l~~~-----~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~ 185 (374)
T 2aeu_A 130 KVGEILNK-----IDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARV 185 (374)
T ss_dssp CHHHHHTT-----CCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHH
T ss_pred CHHHHHhc-----CCCccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCccccc
Confidence 66666554 345778 77766555567 88999999999999999999999876553
No 441
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=20.55 E-value=60 Score=34.82 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=41.7
Q ss_pred ChHHH-----HHHHHhcc-----cCCC-cEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848 132 DVNHL-----TQVLENMD-----VKIP-KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189 (514)
Q Consensus 132 d~~~l-----~~~l~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (514)
|+++| ++.+.+.. +.+| +++++... .-+|.+.+..++.++++++|+.+.+|++|+.+
T Consensus 255 d~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~ 322 (730)
T 1c4k_A 255 YDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGY 322 (730)
T ss_dssp CGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCG
T ss_pred CHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEcccccc
Confidence 55666 77776541 2244 65555432 23799999999999999999999999999754
No 442
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=20.32 E-value=53 Score=31.83 Aligned_cols=42 Identities=12% Similarity=0.212 Sum_probs=30.4
Q ss_pred CCcEEEeeccccccCCccch---hHHhhhhhhcCceEEeeccccc
Q psy16848 147 IPKLVAFETVHSMTGAICPL---KELCEVSHQHGALTFVDEVHAV 188 (514)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 188 (514)
+++++++.....-+|.+.|. .++.++++++|..+.+|+.+..
T Consensus 163 ~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~ 207 (400)
T 3asa_A 163 HIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYST 207 (400)
T ss_dssp CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGG
T ss_pred CccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhh
Confidence 46777766443345777774 4567778999999999999873
No 443
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=20.19 E-value=1e+02 Score=29.41 Aligned_cols=46 Identities=9% Similarity=0.052 Sum_probs=31.0
Q ss_pred Cceee--ecCchhhHHHHHhhcc--CC--ceeeec----chHHHHhhCCCCEEEec
Q psy16848 196 AGIGE--RDGQLHNMDIISGTLV--NP--EVAIHA----SMIQGIRNSSAPKIIYR 241 (514)
Q Consensus 196 ~g~~~--~~G~~~~i~~~~~~l~--~~--~v~~~~----~~~~~~~~~g~~~~~v~ 241 (514)
..|.. .+|++++++.++..+. ++ +++++. .+...+...|++++.++
T Consensus 93 ~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~ 148 (396)
T 2q7w_A 93 KRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYA 148 (396)
T ss_dssp TCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEE
T ss_pred ccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEe
Confidence 34665 8899999999986553 44 565554 44556666777776665
Done!