RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16848
(514 letters)
>gnl|CDD|233587 TIGR01821, 5aminolev_synth, 5-aminolevulinic acid synthase. This
model represents 5-aminolevulinic acid synthase, an
enzyme for one of two routes to the heme precursor
5-aminolevulinate. The protein is a pyridoxal
phosphate-dependent enzyme related to
2-amino-3-ketobutyrate CoA tranferase and
8-amino-7-oxononanoate synthase. This enzyme appears
restricted to the alpha Proteobacteria and mitochondrial
derivatives [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 402
Score = 391 bits (1006), Expect = e-133
Identities = 152/275 (55%), Positives = 196/275 (71%), Gaps = 8/275 (2%)
Query: 218 PEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 271
P I HASMI+GIR+S A K I+RHNDV HL ++L+++D PK++AFE+V+SM
Sbjct: 130 PGCVIFSDELNHASMIEGIRHSGAEKFIFRHNDVAHLEKLLQSVDPNRPKIIAFESVYSM 189
Query: 272 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF 331
G I P++E+C+++ ++GALT++DEVHAVGLYG G GI ERDG +H +DII GTL KAF
Sbjct: 190 DGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAF 249
Query: 332 GNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDI 391
G +GGYI ++ ID IRSYA GFIFTTSLPP + AGA +IR L + +LR HQ+
Sbjct: 250 GVVGGYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQ--DLRRAHQEN 307
Query: 392 VAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGE 451
V L+N L +G PV PSHI+P+ IG+ AL K+ D+LL + G YVQPINYPTVP G
Sbjct: 308 VKRLKNLLEALGIPVIPNPSHIVPVIIGDAALCKKVSDLLLNKHGIYVQPINYPTVPRGT 367
Query: 452 EKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLS 486
E++R+ PTP HT +MID V LL VW L LPLS
Sbjct: 368 ERLRITPTPAHTDKMIDDLVEALLLVWDRLGLPLS 402
Score = 290 bits (743), Expect = 1e-93
Identities = 114/207 (55%), Positives = 151/207 (72%), Gaps = 7/207 (3%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
E L+K+G GAGGTRNISG ++ H +LE ++A LH KE+ LVFTS YVAND+TL TL K+I
Sbjct: 70 ETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKESALVFTSGYVANDATLATLAKII 129
Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159
PG SD NHASMI+GIR+S A K I+RHNDV HL ++L+++D PK++AFE+V+SM
Sbjct: 130 PGCVIFSDELNHASMIEGIRHSGAEKFIFRHNDVAHLEKLLQSVDPNRPKIIAFESVYSM 189
Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL---- 215
G I P++E+C+++ ++GALT++DEVHAVGLYG G GI ERDG +H +DII GTL
Sbjct: 190 DGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAF 249
Query: 216 --VNPEVAIHASMIQGIRNSSAPKIIY 240
V +A +I IR S AP I+
Sbjct: 250 GVVGGYIAASRKLIDAIR-SYAPGFIF 275
>gnl|CDD|236370 PRK09064, PRK09064, 5-aminolevulinate synthase; Validated.
Length = 407
Score = 389 bits (1003), Expect = e-132
Identities = 143/265 (53%), Positives = 182/265 (68%), Gaps = 2/265 (0%)
Query: 223 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 282
HASMI+GIR S K I+RHNDV HL ++L D PKL+AFE+V+SM G I P+ E+C
Sbjct: 142 HASMIEGIRRSRCEKHIFRHNDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAEIC 201
Query: 283 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTK 342
+++ ++ ALT++DEVHAVG+YG G GI ERDG + +DII GTL KAFG +GGYI G+
Sbjct: 202 DLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVMGGYIAGSA 261
Query: 343 NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI 402
+D +RSYA GFIFTTSLPP + A A +IR L +E E R +HQ+ A L+ L
Sbjct: 262 ALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHL--KESNEERERHQERAAKLKAALDAA 319
Query: 403 GFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFH 462
G PV SHI+P+ +G+P K DMLL+E G YVQPINYPTVP G E++R+ PTPFH
Sbjct: 320 GIPVMPNESHIVPVMVGDPEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFH 379
Query: 463 TREMIDKFVTDLLAVWKSLDLPLSG 487
T EMID V L+ VW L LP +
Sbjct: 380 TDEMIDHLVEALVEVWARLGLPRAA 404
Score = 279 bits (715), Expect = 3e-89
Identities = 108/207 (52%), Positives = 144/207 (69%), Gaps = 7/207 (3%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
EAL++ G GAGGTRNISG + +H +LE ++A LH KEA LVFTS YV+ND+TL TL K+I
Sbjct: 71 EALDRCGAGAGGTRNISGTNHYHVELERELADLHGKEAALVFTSGYVSNDATLSTLAKLI 130
Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159
P SD NHASMI+GIR S K I+RHNDV HL ++L D PKL+AFE+V+SM
Sbjct: 131 PDCVIFSDELNHASMIEGIRRSRCEKHIFRHNDVAHLEELLAAADPDRPKLIAFESVYSM 190
Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL---- 215
G I P+ E+C+++ ++ ALT++DEVHAVG+YG G GI ERDG + +DII GTL
Sbjct: 191 DGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAF 250
Query: 216 --VNPEVAIHASMIQGIRNSSAPKIIY 240
+ +A A+++ +R S AP I+
Sbjct: 251 GVMGGYIAGSAALVDAVR-SYAPGFIF 276
>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The major groups in this CD
corresponds to serine palmitoyltransferase (SPT),
5-aminolevulinate synthase (ALAS),
8-amino-7-oxononanoate synthase (AONS), and
2-amino-3-ketobutyrate CoA ligase (KBL). SPT is
responsible for the condensation of L-serine with
palmitoyl-CoA to produce 3-ketodihydrospingosine, the
reaction of the first step in sphingolipid biosynthesis.
ALAS is involved in heme biosynthesis; it catalyzes the
synthesis of 5-aminolevulinic acid from glycine and
succinyl-coenzyme A. AONS catalyses the decarboxylative
condensation of l-alanine and pimeloyl-CoA in the first
committed step of biotin biosynthesis. KBL catalyzes the
second reaction step of the metabolic degradation
pathway for threonine converting 2-amino-3-ketobutyrate,
to glycine and acetyl-CoA. The members of this CD are
widely found in all three forms of life.
Length = 349
Score = 364 bits (937), Expect = e-123
Identities = 130/280 (46%), Positives = 172/280 (61%), Gaps = 12/280 (4%)
Query: 207 NMDIISGTLVNPEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVK-I 259
N ++S TL I HAS+I GIR S A K I++HND+ L ++L
Sbjct: 74 NDGVLS-TLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKHNDMEDLEKLLREARRPYG 132
Query: 260 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHN 319
KL+ E V+SM G I PL EL +++ ++GA+ FVDE H+VG+YG HG G+ E G +
Sbjct: 133 KKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDD 192
Query: 320 MDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQ 379
+DII GTLGKAFG +GGYI G+K ID +RSYA GFIF+TSLPP V A A A+ +L Q
Sbjct: 193 VDIIMGTLGKAFGAVGGYIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVL--Q 250
Query: 380 EGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTK-ICDMLLKEKGHY 438
G E R + Q+ V YLR L ++GFPV +PSHIIP IG+ D LL+ G Y
Sbjct: 251 GGPERRERLQENVRYLRRGLKELGFPVGGSPSHIIPPLIGDDPAKAVAFSDALLER-GIY 309
Query: 439 VQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW 478
VQ I YPTVP G ++R++ + HT+E ID+ + L V
Sbjct: 310 VQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEVG 349
Score = 266 bits (683), Expect = 3e-85
Identities = 95/206 (46%), Positives = 128/206 (62%), Gaps = 9/206 (4%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
EAL+K+G GAGG+R ISG S HE+LEE++A+ H KEA LVF+S Y AND L TL
Sbjct: 26 EALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLSTLAG-- 83
Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVK-IPKLVAFETVHS 158
G ISD+ NHAS+I GIR S A K I++HND+ L ++L KL+ E V+S
Sbjct: 84 KGDLIISDSLNHASIIDGIRLSGAKKRIFKHNDMEDLEKLLREARRPYGKKLIVTEGVYS 143
Query: 159 MTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL--- 215
M G I PL EL +++ ++GA+ FVDE H+VG+YG HG G+ E G ++DII GTL
Sbjct: 144 MDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKA 203
Query: 216 ---VNPEVAIHASMIQGIRNSSAPKI 238
V +A +I +R+ + I
Sbjct: 204 FGAVGGYIAGSKELIDYLRSYARGFI 229
>gnl|CDD|184024 PRK13393, PRK13393, 5-aminolevulinate synthase; Provisional.
Length = 406
Score = 348 bits (894), Expect = e-116
Identities = 153/318 (48%), Positives = 197/318 (61%), Gaps = 18/318 (5%)
Query: 168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMI 227
EL ++ + AL F Y + A + +L I+S L N HASMI
Sbjct: 98 ELADLHGKEAALLFTSG------YVSNWAALSTLGSRLPGCVILSDEL-N-----HASMI 145
Query: 228 QGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ 287
+GIR+S A K I+RHND L + L ++D PKLVAFE+V+SM G I P+ E+C+V+ +
Sbjct: 146 EGIRHSRAEKRIFRHNDPADLERKLSDLDPHRPKLVAFESVYSMDGDIAPIAEICDVAEK 205
Query: 288 HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDT 347
HGA+T++DEVHAVGLYG G GI ER+G + II GTL KAFG +GGYI G+ D
Sbjct: 206 HGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVMGGYITGSAALCDF 265
Query: 348 IRSYAAGFIFTTSLPPTVLAGAREAIRIL--SSQEGVELRAKHQDIVAYLRNELIQIGFP 405
IRS+A+GFIFTTSLPP V AGA ++R L SS E R +HQD VA LR L + G P
Sbjct: 266 IRSFASGFIFTTSLPPAVAAGALASVRHLKASSAE----RERHQDRVARLRARLDKAGIP 321
Query: 406 VEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTRE 465
PSHI+P+ +G+P L +I D LL G YVQPINYPTVP G E++R+ P+P HT
Sbjct: 322 HLPNPSHIVPVMVGDPVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDA 381
Query: 466 MIDKFVTDLLAVWKSLDL 483
I+ V L +W L L
Sbjct: 382 DIEHLVQALSEIWARLGL 399
Score = 251 bits (642), Expect = 2e-78
Identities = 99/176 (56%), Positives = 127/176 (72%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
EAL+ G GAGGTRNISG + +H LE ++A LH KEA L+FTS YV+N + L TLG +
Sbjct: 70 EALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGKEAALLFTSGYVSNWAALSTLGSRL 129
Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159
PG +SD NHASMI+GIR+S A K I+RHND L + L ++D PKLVAFE+V+SM
Sbjct: 130 PGCVILSDELNHASMIEGIRHSRAEKRIFRHNDPADLERKLSDLDPHRPKLVAFESVYSM 189
Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215
G I P+ E+C+V+ +HGA+T++DEVHAVGLYG G GI ER+G + II GTL
Sbjct: 190 DGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTL 245
>gnl|CDD|184023 PRK13392, PRK13392, 5-aminolevulinate synthase; Provisional.
Length = 410
Score = 319 bits (819), Expect = e-105
Identities = 149/318 (46%), Positives = 200/318 (62%), Gaps = 14/318 (4%)
Query: 167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASM 226
+EL ++ + AL F Y + A + L I+S L HASM
Sbjct: 98 RELADLHGKESALLFTSG------YVSNDAALSTLGKLLPGCVILSDALN------HASM 145
Query: 227 IQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSH 286
I+GIR S A K ++RHND+ L + L ++D PKL+AFE+V+SM G I P++ +C+++
Sbjct: 146 IEGIRRSGAEKQVFRHNDLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLAD 205
Query: 287 QHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFID 346
++ ALT+VDEVHAVGLYG G GI ERDG + +D+I GTL KAFG +GGYI + + ID
Sbjct: 206 RYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCLGGYIAASADLID 265
Query: 347 TIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPV 406
+RS+A GFIFTT+LPP V AGA AIR L + R HQD VA L+ +L G PV
Sbjct: 266 FVRSFAPGFIFTTALPPAVAAGATAAIRHL--KTSQTERDAHQDRVAALKAKLNANGIPV 323
Query: 407 EHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREM 466
+PSHI+P+ +G+P L I D L+ E G Y+QPINYPTVP G E++R+ PTP H E
Sbjct: 324 MPSPSHIVPVMVGDPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDED 383
Query: 467 IDKFVTDLLAVWKSLDLP 484
ID V L+A+W L+LP
Sbjct: 384 IDALVAALVAIWDRLELP 401
Score = 232 bits (592), Expect = 4e-71
Identities = 106/207 (51%), Positives = 146/207 (70%), Gaps = 7/207 (3%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
+AL+++G GAGGTRNISG S H LE ++A LH KE+ L+FTS YV+ND+ L TLGK++
Sbjct: 71 DALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKESALLFTSGYVSNDAALSTLGKLL 130
Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159
PG +SDA NHASMI+GIR S A K ++RHND+ L + L ++D PKL+AFE+V+SM
Sbjct: 131 PGCVILSDALNHASMIEGIRRSGAEKQVFRHNDLADLEEQLASVDPDRPKLIAFESVYSM 190
Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL---- 215
G I P++ +C+++ ++ ALT+VDEVHAVGLYG G GI ERDG + +D+I GTL
Sbjct: 191 DGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAF 250
Query: 216 --VNPEVAIHASMIQGIRNSSAPKIIY 240
+ +A A +I +R S AP I+
Sbjct: 251 GCLGGYIAASADLIDFVR-SFAPGFIF 276
>gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related
enzymes [Coenzyme metabolism].
Length = 388
Score = 279 bits (715), Expect = 2e-89
Identities = 116/281 (41%), Positives = 161/281 (57%), Gaps = 13/281 (4%)
Query: 207 NMDIISGTLVNPEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD--VK 258
N+ ++S L+ I HAS+I GIR S A ++HND++HL +LE
Sbjct: 112 NLGLLS-ALLKKGDLIFSDELNHASIIDGIRLSRAEVRRFKHNDLDHLEALLEEARENGA 170
Query: 259 IPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLH 318
KL+ E V SM G I PL EL E++ ++GAL +VDE HAVG+ G +G G+ E G
Sbjct: 171 RRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEP 230
Query: 319 -NMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS 377
+DII GTLGKA G+ GGYI G+ ID +R+ A FIF+T+LPP V A A A+RIL
Sbjct: 231 EEVDIIVGTLGKALGSSGGYIAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRIL- 289
Query: 378 SQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGH 437
+EG E R + Q++ A+ R+ L +G + + S IIP+ +G+ + LL+E G
Sbjct: 290 -EEGPERRERLQELAAFFRSLLKALGLVLLPSESPIIPVILGDEERALEASRALLEE-GI 347
Query: 438 YVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW 478
YV I PTVP G ++R+ T HT E ID+ L V
Sbjct: 348 YVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEVG 388
Score = 205 bits (525), Expect = 2e-61
Identities = 81/179 (45%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
A+ ++G GAGG+R ISG S H +LEE++A EA L+F+S +VAN L L K
Sbjct: 64 AAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGAEAALLFSSGFVANLGLLSALLK-- 121
Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD--VKIPKLVAFETVH 157
G SD NHAS+I GIR S A ++HND++HL +LE KL+ E V
Sbjct: 122 KGDLIFSDELNHASIIDGIRLSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVTEGVF 181
Query: 158 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLH-NMDIISGTL 215
SM G I PL EL E++ ++GAL +VDE HAVG+ G +G G+ E G +DII GTL
Sbjct: 182 SMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTL 240
>gnl|CDD|129937 TIGR00858, bioF, 8-amino-7-oxononanoate synthase.
7-keto-8-aminopelargonic acid synthetase is an alternate
name. This model represents 8-amino-7-oxononanoate
synthase, the BioF protein of biotin biosynthesis. This
model is based on a careful phylogenetic analysis to
separate members of this family from
2-amino-3-ketobutyrate and other related pyridoxal
phosphate-dependent enzymes. In several species,
including Staphylococcus and Coxiella, a candidate
8-amino-7-oxononanoate synthase is confirmed by location
in the midst of a biotin biosynthesis operon but scores
below the trusted cutoff of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 360
Score = 224 bits (573), Expect = 9e-69
Identities = 101/275 (36%), Positives = 145/275 (52%), Gaps = 11/275 (4%)
Query: 203 GQLHNMDIISGTLVNPEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD 256
G L N+ +IS LV I HAS+I G R S A YRHNDV HL ++LE
Sbjct: 85 GYLANVGVIS-ALVGKGDLILSDALNHASLIDGCRLSGARVRRYRHNDVEHLERLLEKNR 143
Query: 257 VKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQ 316
+ KL+ + V SM G I PL +L ++ ++GA VD+ H G+ GE G G E G
Sbjct: 144 GERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGL 203
Query: 317 LHNMDIIS-GTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRI 375
I GTL KA G+ G Y+ G++ ID + + A IF+T+LPP V A A A+ +
Sbjct: 204 KPEPVDIQVGTLSKALGSYGAYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALEL 263
Query: 376 LSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEK 435
+ QE R K ++A LR L +GF + + + I+P+ IG+ A + + L ++
Sbjct: 264 I--QEEPWRREKLLALIARLRAGLEALGFTLMPSCTPIVPVIIGDNASALALAEELQQQ- 320
Query: 436 GHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKF 470
G +V I PTVP G ++RL + HT ID+
Sbjct: 321 GIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRL 355
Score = 159 bits (404), Expect = 4e-44
Identities = 72/179 (40%), Positives = 101/179 (56%), Gaps = 3/179 (1%)
Query: 38 LGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGK 97
+ E++G G+ +R +SGNS HE+LEE++A+ EA L+F+S Y+AN + L
Sbjct: 39 AQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGTEAALLFSSGYLANVGVISAL-- 96
Query: 98 MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 157
+ G +SDA NHAS+I G R S A YRHNDV HL ++LE + KL+ + V
Sbjct: 97 VGKGDLILSDALNHASLIDGCRLSGARVRRYRHNDVEHLERLLEKNRGERRKLIVTDGVF 156
Query: 158 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS-GTL 215
SM G I PL +L ++ ++GA VD+ H G+ GE G G E G I GTL
Sbjct: 157 SMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTL 215
>gnl|CDD|235655 PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.
Length = 385
Score = 223 bits (571), Expect = 4e-68
Identities = 94/258 (36%), Positives = 134/258 (51%), Gaps = 5/258 (1%)
Query: 222 IHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL 281
HAS+I G R S A Y HNDV+ L +L L+ E+V SM G + PL EL
Sbjct: 132 NHASLIDGARLSRARVRRYPHNDVDALEALLAKWRAG-RALIVTESVFSMDGDLAPLAEL 190
Query: 282 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDG-QLHNMDIISGTLGKAFGNIGGYIVG 340
++ +HGA VDE H G+ G G G+ G I+ GTLGKA G+ G ++G
Sbjct: 191 VALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSGAAVLG 250
Query: 341 TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI 400
++ ID + + A FIFTT+LPP A AR A+RIL + E R + ++A LR L
Sbjct: 251 SETLIDYLINRARPFIFTTALPPAQAAAARAALRIL--RREPERRERLAALIARLRAGLR 308
Query: 401 QIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTP 460
+GF + + S I P+ +G+ + L+E+G +V I PTVP G ++R+ T
Sbjct: 309 ALGFQLMDSQSAIQPLIVGDNERALALAAA-LQEQGFWVGAIRPPTVPAGTSRLRITLTA 367
Query: 461 FHTREMIDKFVTDLLAVW 478
HT ID+ + L
Sbjct: 368 AHTEADIDRLLEALAEAL 385
Score = 161 bits (411), Expect = 6e-45
Identities = 65/165 (39%), Positives = 90/165 (54%), Gaps = 3/165 (1%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
+A ++G G+GG+R ++GNS HE LEE++A+ E L+F+S Y AN + L L
Sbjct: 64 QAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFGAERALLFSSGYAANLAVLTAL--AG 121
Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159
G +SD NHAS+I G R S A Y HNDV+ L +L L+ E+V SM
Sbjct: 122 KGDLIVSDKLNHASLIDGARLSRARVRRYPHNDVDALEALLAKWRAG-RALIVTESVFSM 180
Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQ 204
G + PL EL ++ +HGA VDE H G+ G G G+ G
Sbjct: 181 DGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGL 225
>gnl|CDD|235893 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase;
Provisional.
Length = 397
Score = 218 bits (559), Expect = 3e-66
Identities = 101/286 (35%), Positives = 153/286 (53%), Gaps = 13/286 (4%)
Query: 207 NMDIISGTLVNPEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP 260
N + TL+ E AI HAS+I G+R A + Y +ND+ L L+
Sbjct: 115 NGGLFE-TLLGKEDAIISDALNHASIIDGVRLCKAKRYRYANNDMADLEAQLKEAKEAGA 173
Query: 261 --KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLH 318
KL+A + V SM G I PL E+C+++ ++ AL VD+ HAVG GE+G G E G +
Sbjct: 174 RHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMD 233
Query: 319 NMDIISGTLGKAFGN-IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS 377
+DII+GTLGKA G GGY G K ID +R + ++F+ SL P ++A + + + +L
Sbjct: 234 RVDIITGTLGKALGGASGGYTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELL- 292
Query: 378 SQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGH 437
+E ELR + + Y R + GF + IIP+ +G+ L + D LL+E G
Sbjct: 293 -EESDELRDRLWENARYFREGMTAAGFTLGPGEHPIIPVMLGDAKLAQEFADRLLEE-GV 350
Query: 438 YVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL 483
YV ++P VP G+ +IR + HT+E +D+ + V K L +
Sbjct: 351 YVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKELGV 396
Score = 145 bits (368), Expect = 1e-38
Identities = 70/181 (38%), Positives = 98/181 (54%), Gaps = 10/181 (5%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND---STLFTLG 96
AL+ G G R I G H++LEE +AK E ++++SC+ AN TL
Sbjct: 67 AALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGTEDAILYSSCFDANGGLFETLLGKE 126
Query: 97 KMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP--KLVAFE 154
I ISDA NHAS+I G+R A + Y +ND+ L L+ KL+A +
Sbjct: 127 DAI-----ISDALNHASIIDGVRLCKAKRYRYANNDMADLEAQLKEAKEAGARHKLIATD 181
Query: 155 TVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT 214
V SM G I PL E+C+++ ++ AL VD+ HAVG GE+G G E G + +DII+GT
Sbjct: 182 GVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGT 241
Query: 215 L 215
L
Sbjct: 242 L 242
>gnl|CDD|130884 TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-dependent
acyltransferase, putative. This model represents an
enzyme subfamily related to three known enzymes; it
appears closest to glycine C-acteyltransferase, shows no
overlap with it in species distribution, and may share
that function. The three closely related enzymes are
glycine C-acetyltransferase (2-amino-3-ketobutyrate
coenzyme A ligase), 5-aminolevulinic acid synthase, and
8-amino-7-oxononanoate synthase. All transfer the
R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from
coenzyme A to an amino acid (Gly, Gly, Ala,
respectively), with release of CO2 for the latter two
reactions.
Length = 385
Score = 197 bits (502), Expect = 3e-58
Identities = 98/295 (33%), Positives = 156/295 (52%), Gaps = 10/295 (3%)
Query: 195 GAGIGERDGQLHNMDIISGTLVNPEVAI-----HASMIQGIRNSSAPKIIYRHNDVNHLT 249
A + + G N ++S L ++ + HAS+I G+R + A K IY+H D++ L
Sbjct: 94 EAALVFQSGFNTNQGVLSALLRKGDIVLSDELNHASIIDGLRLTKATKKIYKHADMDDLD 153
Query: 250 QVL-ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGA 308
+VL EN KL+ + V SM G + PL E+ E++ ++GA+T+VD+ H G+ GE G
Sbjct: 154 RVLRENPSYGK-KLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGR 212
Query: 309 GIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAG 368
G G +DI GTL KA G +GGY G K I+ +++ A F+F+T+ PP V+A
Sbjct: 213 GTVHHFGLEDKVDIQVGTLSKAIGVVGGYAAGHKELIEYLKNRARPFLFSTAQPPAVVAA 272
Query: 369 AREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKIC 428
A+ L Q EL + D + + L ++G+ + + I P+ IG+ +
Sbjct: 273 LAAAVDEL--QRSPELMERLWDNTRFFKAGLGKLGYDTGGSETPITPVVIGDEKAAQEFS 330
Query: 429 DMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL 483
L ++G + Q I +PTVP G +IR PT HT++ +D+ + V K L L
Sbjct: 331 RR-LFDEGIFAQSIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGKELGL 384
Score = 136 bits (344), Expect = 1e-35
Identities = 78/204 (38%), Positives = 115/204 (56%), Gaps = 10/204 (4%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
+A++++G GAG R I+G HE+LEE +AK + EA LVF S + N L L +
Sbjct: 58 QAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKTEAALVFQSGFNTNQGVLSAL--LR 115
Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVL-ENMDVKIPKLVAFETVHS 158
G +SD NHAS+I G+R + A K IY+H D++ L +VL EN KL+ + V S
Sbjct: 116 KGDIVLSDELNHASIIDGLRLTKATKKIYKHADMDDLDRVLRENPSYGK-KLIVTDGVFS 174
Query: 159 MTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL--- 215
M G + PL E+ E++ ++GA+T+VD+ H G+ GE G G G +DI GTL
Sbjct: 175 MDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKA 234
Query: 216 ---VNPEVAIHASMIQGIRNSSAP 236
V A H +I+ ++N + P
Sbjct: 235 IGVVGGYAAGHKELIEYLKNRARP 258
>gnl|CDD|130881 TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate coenzyme A ligase.
This model represents a narrowly defined clade of animal
and bacterial (almost exclusively Proteobacterial)
2-amino-3-ketobutyrate--CoA ligase. This enzyme can act
in threonine catabolism. The closest homolog from
Bacillus subtilis, and sequences like it, may be
functionally equivalent but were not included in the
model because of difficulty in finding reports of
function [Energy metabolism, Amino acids and amines].
Length = 393
Score = 177 bits (450), Expect = 1e-50
Identities = 91/267 (34%), Positives = 139/267 (52%), Gaps = 12/267 (4%)
Query: 214 TLVNPEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPK--LVAF 265
TL+ E AI HAS+I G+R A + Y +ND+ L L+ + L+A
Sbjct: 117 TLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMADLEAQLKEARAAGARHRLIAT 176
Query: 266 ETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG 325
+ V SM G I PL E+C+++ ++ AL VDE HA G G G G E G + +DII+G
Sbjct: 177 DGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITG 236
Query: 326 TLGKAFGN-IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVEL 384
TLGKA G GG+ K ++ +R + ++F+ SLPP V+ + + + +L + EL
Sbjct: 237 TLGKALGGASGGFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEML--EASNEL 294
Query: 385 RAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINY 444
R + Y R + GF ++ IIP+ + + L + LL+E G YV Y
Sbjct: 295 RDRLWANTRYFRERMEAAGFDIKPADHPIIPVMLYDAVLAQRFARRLLEE-GIYVTGFFY 353
Query: 445 PTVPVGEEKIRLAPTPFHTREMIDKFV 471
P VP G+ +IR+ + HT E +D+ V
Sbjct: 354 PVVPKGQARIRVQISAAHTEEQLDRAV 380
Score = 126 bits (319), Expect = 4e-32
Identities = 66/181 (36%), Positives = 94/181 (51%), Gaps = 10/181 (5%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND---STLFTLG 96
+AL++ G G R I G H++LE +A E +++ SC+ AN TL
Sbjct: 63 DALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLGTEDTILYASCFDANGGLFETLLGAE 122
Query: 97 KMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPK--LVAFE 154
I ISDA NHAS+I G+R A + Y +ND+ L L+ + L+A +
Sbjct: 123 DAI-----ISDALNHASIIDGVRLCKAKRYRYANNDMADLEAQLKEARAAGARHRLIATD 177
Query: 155 TVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT 214
V SM G I PL E+C+++ ++ AL VDE HA G G G G E G + +DII+GT
Sbjct: 178 GVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGT 237
Query: 215 L 215
L
Sbjct: 238 L 238
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 153 bits (389), Expect = 4e-42
Identities = 63/267 (23%), Positives = 111/267 (41%), Gaps = 30/267 (11%)
Query: 223 HASMIQGIRNSSAPKIIYR-------HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAI 275
+ S I+ R + + Y H D + L L+ + K+V + H+ TG +
Sbjct: 100 YPSYIRIFRLAGGEVVRYPLYSSNDFHLDFDALEAALKE-ATEGNKVVLHTSPHNPTGTV 158
Query: 276 CPLKELCEV---SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMD-----IISGTL 327
L+EL ++ + +H L VDE +A ++G A + ++ G+
Sbjct: 159 ATLEELEKLLDLAKEHNILLLVDEAYAGFVFGSLDAV-----ATRALLAEGPNLLVVGSF 213
Query: 328 GKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVEL 384
KAFG G GYI+G I +R A F +T L A + + + S E E+
Sbjct: 214 SKAFGLAGWRVGYILGNAAVISQLRKLARPFYSSTHLQAAAAAALSDPLLVAS--ELEEM 271
Query: 385 RAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINY 444
R + ++ YLR+ L G V + + + +P + +LL+E G YV P +
Sbjct: 272 RQRIKERRDYLRDGLEAAGLSVLPSQAGFFLLTGLDPEAALALAQVLLEEVGVYVTPGSS 331
Query: 445 PTVPVGEEKIRLAPTPFHTREMIDKFV 471
G +R+ T E +++ +
Sbjct: 332 FG---GPGWLRITVAG-GTEEELEELL 354
Score = 115 bits (289), Expect = 3e-28
Identities = 52/192 (27%), Positives = 84/192 (43%), Gaps = 21/192 (10%)
Query: 23 LSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH--------Q 74
L S +Y G + +A + AGGTRN+ G + +L E +AK
Sbjct: 6 LGSNEYLGDSGTLPAVAKAEKDAL--AGGTRNLYGPTDGLPELREALAKFLGRSPVLKLD 63
Query: 75 KEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYR----- 129
+EA +VF S AN L L ++ PG + A + S I+ R + + Y
Sbjct: 64 REAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAGGEVVRYPLYSSN 123
Query: 130 --HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV---SHQHGALTFVDE 184
H D + L L+ + K+V + H+ TG + L+EL ++ + +H L VDE
Sbjct: 124 DFHLDFDALEAALKE-ATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEHNILLLVDE 182
Query: 185 VHAVGLYGEHGA 196
+A ++G A
Sbjct: 183 AYAGFVFGSLDA 194
>gnl|CDD|178101 PLN02483, PLN02483, serine palmitoyltransferase.
Length = 489
Score = 134 bits (339), Expect = 3e-34
Identities = 83/278 (29%), Positives = 142/278 (51%), Gaps = 28/278 (10%)
Query: 210 IISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL-ENMDVKIPK------- 261
IIS +L N H S++ G R S A +++HN +HL +VL E + P+
Sbjct: 188 IISDSL-N-----HNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKK 241
Query: 262 -LVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDG-QLHN 319
+V E ++SM G +C L E+ V ++ A ++DE H++G G+ G G+ E G +
Sbjct: 242 IIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPAD 301
Query: 320 MDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQ 379
+DI+ GT K+FG+ GGYI G+K I ++ ++ TS+ P + AI+++ +
Sbjct: 302 VDIMMGTFTKSFGSCGGYIAGSKELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGE 361
Query: 380 EGVELRAKH----QDIVAYLRNELIQIGFPV-EHTPSHIIPIKIGNPALNTKICDM---L 431
+G A+ ++ + R+EL ++GF V S ++PI + NPA KI
Sbjct: 362 DGTNRGAQKLAQIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPA---KIPAFSREC 418
Query: 432 LKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDK 469
LK+ V + +P P+ + R+ + H+RE + K
Sbjct: 419 LKQNVAVVV-VGFPATPLLLARARICISASHSREDLIK 455
Score = 112 bits (283), Expect = 9e-27
Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 14/186 (7%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL-GKM 98
E+L+K+ +R G + H +LEE VA+ K A +VF Y N + + L GK
Sbjct: 126 ESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKPAAIVFGMGYATNSTIIPALIGK- 184
Query: 99 IPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVL-ENMDVKIPK-------- 149
G ISD+ NH S++ G R S A +++HN +HL +VL E + P+
Sbjct: 185 --GGLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKI 242
Query: 150 LVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDG-QLHNM 208
+V E ++SM G +C L E+ V ++ A ++DE H++G G+ G G+ E G ++
Sbjct: 243 IVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADV 302
Query: 209 DIISGT 214
DI+ GT
Sbjct: 303 DIMMGT 308
>gnl|CDD|180866 PRK07179, PRK07179, hypothetical protein; Provisional.
Length = 407
Score = 127 bits (321), Expect = 3e-32
Identities = 72/265 (27%), Positives = 131/265 (49%), Gaps = 11/265 (4%)
Query: 223 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 282
H S+ +G+R + A +RHNDV+HL + +E P ++ ++V+S TG I PL ++
Sbjct: 148 HMSLWEGVRAAGAQAHPFRHNDVDHLRRQIERHG---PGIIVVDSVYSTTGTIAPLADIV 204
Query: 283 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTK 342
+++ + G + VDE H++G +G GAG+ G + I+ +L KAF G I +
Sbjct: 205 DIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFAGRAGIITCPR 264
Query: 343 NFIDTIR--SYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI 400
+ + SY A IF+++L P +AG + ++ S + + RA+ +LR L
Sbjct: 265 ELAEYVPFVSYPA--IFSSTLLPHEIAGLEATLEVIESAD--DRRARLHANARFLREGLS 320
Query: 401 QIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTP 460
++G+ + + S II ++ G+ NT++ L+E+ + P P IRL+
Sbjct: 321 ELGYNI-RSESQIIALETGSER-NTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNA 378
Query: 461 FHTREMIDKFVTDLLAVWKSLDLPL 485
T +D+ + +DL
Sbjct: 379 DLTASDLDRVLEVCREARDEVDLWF 403
Score = 91.2 bits (227), Expect = 9e-20
Identities = 47/152 (30%), Positives = 80/152 (52%), Gaps = 7/152 (4%)
Query: 65 LEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLH-YISDAGNHASMIQGIRNSSA 123
E+ +A E+ L+ S + AN L T+ P YI D H S+ +G+R + A
Sbjct: 104 FEKKLAAFTGFESCLLCQSGWAANVGLLQTIAD--PNTPVYI-DFFAHMSLWEGVRAAGA 160
Query: 124 PKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD 183
+RHNDV+HL + +E P ++ ++V+S TG I PL ++ +++ + G + VD
Sbjct: 161 QAHPFRHNDVDHLRRQIERHG---PGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVD 217
Query: 184 EVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215
E H++G +G GAG+ G + I+ +L
Sbjct: 218 ESHSLGTHGPQGAGLVAELGLTSRVHFITASL 249
>gnl|CDD|178541 PLN02955, PLN02955, 8-amino-7-oxononanoate synthase.
Length = 476
Score = 124 bits (312), Expect = 1e-30
Identities = 83/270 (30%), Positives = 137/270 (50%), Gaps = 20/270 (7%)
Query: 215 LVNPEVAI------HASMIQGIR----NSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVA 264
L N +VAI HAS+I G+R + +YRH D+ HL +L + +K K+V
Sbjct: 196 LKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHCDMYHLNSLLSSCKMK-RKVVV 254
Query: 265 FETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS 324
+++ SM G P++EL ++ ++G L +D+ H + GE+G G+ E ++D+
Sbjct: 255 TDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCV 314
Query: 325 GTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVEL 384
GTL KA G GG+I +K + I+S FIF+T++P + A A A+ +++ +E
Sbjct: 315 GTLSKAAGCHGGFIACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAV-VVARKEKWRR 373
Query: 385 RAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINY 444
+A + + + + I P II + +GN K LLK G +V I
Sbjct: 374 KAIWERVKEFKALSGVDISSP-------IISLVVGNQEKALKASRYLLKS-GFHVMAIRP 425
Query: 445 PTVPVGEEKIRLAPTPFHTREMIDKFVTDL 474
PTVP ++R+ + HT E + K +T L
Sbjct: 426 PTVPPNSCRLRVTLSAAHTTEDVKKLITAL 455
Score = 98.6 bits (245), Expect = 5e-22
Identities = 58/196 (29%), Positives = 98/196 (50%), Gaps = 17/196 (8%)
Query: 36 KCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL 95
A +++G G G+ I G + +H LE +A L +KE LV + + AN + + +
Sbjct: 123 NAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKEDCLVCPTGFAANMAAMVAI 182
Query: 96 GKMIPGLH------------YISDAGNHASMIQGIR----NSSAPKIIYRHNDVNHLTQV 139
G + L SDA NHAS+I G+R + +YRH D+ HL +
Sbjct: 183 GSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHCDMYHLNSL 242
Query: 140 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIG 199
L + +K K+V +++ SM G P++EL ++ ++G L +D+ H + GE+G G+
Sbjct: 243 LSSCKMK-RKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVA 301
Query: 200 ERDGQLHNMDIISGTL 215
E ++D+ GTL
Sbjct: 302 EEFNCEADVDLCVGTL 317
>gnl|CDD|181006 PRK07505, PRK07505, hypothetical protein; Provisional.
Length = 402
Score = 117 bits (294), Expect = 1e-28
Identities = 76/257 (29%), Positives = 121/257 (47%), Gaps = 13/257 (5%)
Query: 223 HASM--IQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE 280
HAS+ ++GI HND++ L + + K VA + V+SM G P+KE
Sbjct: 145 HASLNILKGICADETEVETIDHNDLDALEDICKTN--KTVAYVA-DGVYSMGGIA-PVKE 200
Query: 281 LCEVSHQHGALTFVDEVHAVGLYGEHGAG--IGERDGQLHNMDIISGTLGKAFGNIGGYI 338
L + ++G ++D+ H + +YG++G G E D +L+ II+ +LGKAFG GG I
Sbjct: 201 LLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGASGGVI 260
Query: 339 -VGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRN 397
+G I+ I YA F+ SL L + I S+E +L+ K Q+ +A +
Sbjct: 261 MLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALF-D 319
Query: 398 ELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLA 457
LI P +I IG+ K L ++G Y P+ +P V G +R+
Sbjct: 320 SLIPTEQSGSFLPIRLIY--IGDEDTAIKAAK-QLLDRGFYTSPVFFPVVAKGRAGLRIM 376
Query: 458 PTPFHTREMIDKFVTDL 474
HT + I + + L
Sbjct: 377 FRASHTNDEIKRLCSLL 393
Score = 61.1 bits (149), Expect = 4e-10
Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 19/162 (11%)
Query: 65 LEEDVAKLHQKEAGLVFTSCYVANDSTL-------FTLGKMIPGLHYISDAGNHASM--I 115
LEE +++L L FTSC A+ L T G H + D HAS+ +
Sbjct: 96 LEEALSELFGASV-LTFTSCSAAHLGILPLLASGHLTGGVPP---HMVFDKNAHASLNIL 151
Query: 116 QGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ 175
+GI HND++ L + + K VA + V+SM G P+KEL + +
Sbjct: 152 KGICADETEVETIDHNDLDALEDICKTN--KTVAYVA-DGVYSMGGIA-PVKELLRLQEK 207
Query: 176 HGALTFVDEVHAVGLYGEHGAG--IGERDGQLHNMDIISGTL 215
+G ++D+ H + +YG++G G E D +L+ II+ +L
Sbjct: 208 YGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASL 249
>gnl|CDD|178766 PLN03227, PLN03227, serine palmitoyltransferase-like protein;
Provisional.
Length = 392
Score = 99.6 bits (248), Expect = 1e-22
Identities = 68/290 (23%), Positives = 123/290 (42%), Gaps = 41/290 (14%)
Query: 222 IHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD-----VKIP-----KLVAFETVHSM 271
++ +++ G+ S A +RHND+ L +VLE + +K + + E ++
Sbjct: 91 VNEALLVGVSLSRANVRWFRHNDMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKN 150
Query: 272 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQ--LHNMDIISGTLGK 329
TG + PLKEL + + +DE + G G+ G G E G + + +I++ +L
Sbjct: 151 TGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLEN 210
Query: 330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI-RILSSQEGVELRAKH 388
AFG++GG VG++ +D R +G+ F+ S PP + A L+ + + +
Sbjct: 211 AFGSVGGMTVGSEEVVDHQRLSGSGYCFSASAPPFLAKADATATAGELAGPQLLN---RL 267
Query: 389 QDIVAYLRNELIQIGFPVEHTP-----------SHIIPIKIGN-PALNTKICDMLLKEKG 436
D +A L + L P S II +++ + A ++L +
Sbjct: 268 HDSIANLYSTLTNSSHPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIA 327
Query: 437 HY------------VQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDL 474
H+ + + V +R+ HTRE IDK +T L
Sbjct: 328 HHSLSEGVAVVSTGGHVKKFLQL-VPPPCLRVVANASHTREDIDKLLTVL 376
Score = 75.3 bits (185), Expect = 1e-14
Identities = 50/195 (25%), Positives = 91/195 (46%), Gaps = 14/195 (7%)
Query: 35 RKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFT 94
R+ E+L +G G+ G R G H +LE+ +A+ E+ ++++ ST+
Sbjct: 18 RQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTESAILYSDGASTTSSTVAA 77
Query: 95 LGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD-----VKIP- 148
K G + D G + +++ G+ S A +RHND+ L +VLE + +K
Sbjct: 78 FAKR--GDLLVVDRGVNEALLVGVSLSRANVRWFRHNDMKDLRRVLEQVRAQDVALKRKP 135
Query: 149 ----KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQ 204
+ + E ++ TG + PLKEL + + +DE + G G+ G G E G
Sbjct: 136 TDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGL 195
Query: 205 --LHNMDIISGTLVN 217
+ + +I++ +L N
Sbjct: 196 KPMVHAEIVTFSLEN 210
>gnl|CDD|178417 PLN02822, PLN02822, serine palmitoyltransferase.
Length = 481
Score = 94.0 bits (234), Expect = 1e-20
Identities = 78/282 (27%), Positives = 130/282 (46%), Gaps = 37/282 (13%)
Query: 229 GIRNS---SAPKIIY-RHNDVNHLTQVLENMDV------KIPKLVAFETVHSMTGAICPL 278
GI+N S I+Y +HND+ L LE + K+ + + E ++ +G I PL
Sbjct: 205 GIQNGLYLSRSTIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPL 264
Query: 279 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDG-QLHNMDIISGTLGKAFGNIGGY 337
E+ + ++ +DE ++ G+ G+ G G+ E G + +DII+ +G A GG+
Sbjct: 265 DEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEGGF 324
Query: 338 IVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRN 397
G+ +D R ++G++F+ SLPP + + A AI +L ++ + AK ++ +A L
Sbjct: 325 CTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL--EDNPSVLAKLKENIALLHK 382
Query: 398 EL-----IQIGFPVEHTPSHIIPIKIGNPALNTK--------ICDMLLKEKGHYVQPINY 444
L + IG +T S I+ + + + K I D +LKE V
Sbjct: 383 GLSDIPGLSIG---SNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKR 439
Query: 445 PTV-----PVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481
T+ PVG IRL + HT I K L V S+
Sbjct: 440 STLDKCRLPVG---IRLFVSAGHTESDILKASESLKRVAASV 478
Score = 67.5 bits (165), Expect = 6e-12
Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 19/185 (10%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
ALEK+G G+ G R G H E +AK ++ Y ST+F++ I
Sbjct: 134 SALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGTPDSIL----YSYGLSTIFSV---I 186
Query: 100 P-----GLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV------KIP 148
P G ++D G H + G+ S + + ++HND+ L LE + K+
Sbjct: 187 PAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNTLEKLTAENKRKKKLR 246
Query: 149 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDG-QLHN 207
+ + E ++ +G I PL E+ + ++ +DE ++ G+ G+ G G+ E G +
Sbjct: 247 RYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEK 306
Query: 208 MDIIS 212
+DII+
Sbjct: 307 IDIIT 311
>gnl|CDD|102071 PRK05937, PRK05937, 8-amino-7-oxononanoate synthase; Provisional.
Length = 370
Score = 89.1 bits (221), Expect = 3e-19
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 8/155 (5%)
Query: 48 GAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISD 107
G GG+R I G S + LE +A H + S Y+AN L + + + D
Sbjct: 44 GYGGSRAILGPSSLLDDLEHKIAHFHGAPEAFIVPSGYMANLGLCAHLSSVTDYVLW--D 101
Query: 108 AGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV----KIPKLVAFETVHSMTGAI 163
H S++ + S +RHND++HL +LE+ +I V +V+S G +
Sbjct: 102 EQVHISVVYSLSVISGWHQSFRHNDLDHLESLLESCRQRSFGRIFIFVC--SVYSFKGTL 159
Query: 164 CPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGI 198
PL+++ +S ++ A VDE HA+G++G+ G G
Sbjct: 160 APLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGF 194
Score = 74.4 bits (183), Expect = 2e-14
Identities = 66/257 (25%), Positives = 117/257 (45%), Gaps = 20/257 (7%)
Query: 222 IHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV----KIPKLVAFETVHSMTGAICP 277
+H S++ + S +RHND++HL +LE+ +I V +V+S G + P
Sbjct: 104 VHISVVYSLSVISGWHQSFRHNDLDHLESLLESCRQRSFGRIFIFVC--SVYSFKGTLAP 161
Query: 278 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGY 337
L+++ +S ++ A VDE HA+G++G+ G G G N + T KA G++G
Sbjct: 162 LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLG-YENFYAVLVTYSKALGSMGAA 220
Query: 338 IVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRN 397
++ + + + ++T LPP +L + A L SQEG R + + Y
Sbjct: 221 LLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFL-SQEGELARKQLFRLKEYFAQ 279
Query: 398 ELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLA 457
+ P + PI + P ++ + L E G V + +PT P +R+
Sbjct: 280 ---KFSS---AAPGCVQPIFL--PGISEQELYSKLVETGIRVGVVCFPTGPF----LRVN 327
Query: 458 PTPFHTREMIDKFVTDL 474
F+T + +D V+ L
Sbjct: 328 LHAFNTEDEVDILVSVL 344
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 56.2 bits (136), Expect = 3e-09
Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 9/147 (6%)
Query: 61 FHEKLEEDVAKLHQK--EAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGI 118
E+LEE +A+L Q + + S AN++ L L PG I DA H S
Sbjct: 1 KLEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLG--PGDEVIVDANGHGSRYWVA 58
Query: 119 RNSSAPKII-YRHND----VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVS 173
+ K + +D + + E L+ + G + PLKE+ +++
Sbjct: 59 AELAGAKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIA 118
Query: 174 HQHGALTFVDEVHAVGLYGEHGAGIGE 200
++G L VD A G G I E
Sbjct: 119 KEYGILLLVDAASAGGASPAPGVLIPE 145
Score = 50.8 bits (122), Expect = 2e-07
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 246 NHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGE 305
+ + E L+ + G + PLKE+ +++ ++G L VD A G
Sbjct: 79 LDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPA 138
Query: 306 HGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTK 342
G I E D+++ +L K G GG +V K
Sbjct: 139 PGVLIPEGGA-----DVVTFSLHKNLGGEGGGVVIVK 170
>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase
[Posttranslational modification, protein turnover,
chaperones].
Length = 405
Score = 57.3 bits (139), Expect = 7e-09
Identities = 51/257 (19%), Positives = 90/257 (35%), Gaps = 48/257 (18%)
Query: 250 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG-------- 301
LE + KLVA V ++TG + P+KE+ E++H+HGAL VD A G
Sbjct: 153 DALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQE 212
Query: 302 -------------LYGEHGAGI--GERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFID 346
L G G G+ ++ L G GG ++ + +
Sbjct: 213 LGCDFLAFSGHKWLLGPTGIGVLYVRKELL--------EELEPFLG--GGGMIEYVSRDE 262
Query: 347 TIRSYAAGFIFTTSLPPTVLA-GAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFP 405
+ F P A G A+ L + A +++ YL L ++
Sbjct: 263 GVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGV 322
Query: 406 VEHTP-----SHIIPIKIGNPALNTKICDMLLKEK------GHYVQPINYPTVPVGEEKI 454
+ P I+ + + +L ++ H QP + + I
Sbjct: 323 EIYGPPDADRGGIVSFNVKGIH-PHDVATLLDEKGIAVRAGHHCAQP--LHRLLGVDATI 379
Query: 455 RLAPTPFHTREMIDKFV 471
R + ++T E +D+ +
Sbjct: 380 RASLHLYNTEEDVDRLL 396
Score = 53.1 bits (128), Expect = 2e-07
Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 13/138 (9%)
Query: 63 EKLEEDVAKL--HQKEAGLVFTSCYVANDST---LFTLGKMI-PGLHYISDAGNHASMI- 115
E E VA+ +VFT ++ LG+ + PG + H S I
Sbjct: 69 EAAREAVARFLNADSSDEIVFTRG--TTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIV 126
Query: 116 --QGIRNSSAPKIIYRHNDVNHL--TQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE 171
Q + + K+ D + L LE + KLVA V ++TG + P+KE+ E
Sbjct: 127 PWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAE 186
Query: 172 VSHQHGALTFVDEVHAVG 189
++H+HGAL VD A G
Sbjct: 187 LAHEHGALVLVDAAQAAG 204
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein.
Length = 350
Score = 54.7 bits (132), Expect = 4e-08
Identities = 51/203 (25%), Positives = 80/203 (39%), Gaps = 31/203 (15%)
Query: 272 TGAICP---LKELCEVSHQHGALTFVDEVHAVGL-YGEHGAGIGERDGQLHNMDIISGTL 327
TGA+ L+EL E++ +HG L DE +A L Y + I+ +
Sbjct: 145 TGAVLSEEELEELAELAKKHGILIISDEAYA-ELVYDGEPPPALALLDAYERV-IVLRSF 202
Query: 328 GKAFGNIG---GYIVGTKN-FIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEG-- 381
K FG G GY++ ++ ++ +TTS P T+ A A L E
Sbjct: 203 SKTFGLPGLRIGYLIAPPEELLERLKKLL---PYTTSGPSTLSQAA--AAAALDDGEEHL 257
Query: 382 VELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGN-------PALNTKICDMLLKE 434
ELR +++ L L ++G V PS G + + + LL E
Sbjct: 258 EELRERYRRRRDALLEALKELGPLVVVKPSG------GFFLWLDLPEGDDEEFLERLLLE 311
Query: 435 KGHYVQPINYPTVPVGEEKIRLA 457
G V+P + GE +RL+
Sbjct: 312 AGVVVRPGSAF-GEGGEGFVRLS 333
>gnl|CDD|213793 TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate aminotransferase.
This family includes a number of 2-aminoethylphosphonate
aminotransferases, some of which are indicated to
operate in the catabolism of 2-aminoethylphosphonate
(AEP) and others which are involved in the biosynthesis
of the same compound. The catabolic enzyme (PhnW, ) is
known to use pyruvate:alanine as the transfer partner
and is modeled by the equivalog-level TIGR02326. The
PhnW family is apparently a branch of a larger tree
including genes (AepZ) adjacent to others responsible
for the biosynthesis of phosphonoacetaldehyde. The
identity of the transfer partner is unknown for these
enzymes and considering the reversed flux compared to
PhnW, it may very well be different.
Length = 355
Score = 49.3 bits (118), Expect = 2e-06
Identities = 38/168 (22%), Positives = 67/168 (39%), Gaps = 34/168 (20%)
Query: 260 PKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQL 317
P + TVH TG + PL+ + +V+ HGA+ VD + + G I E D
Sbjct: 124 PDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGA---IPIDIEELD--- 177
Query: 318 HNMDIISGTLGKAFGNIGG--YIVGTKNFI----DTIRSYAAGFI-------------FT 358
+D + + K + G +++ ++ + RS FT
Sbjct: 178 --VDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFT 235
Query: 359 TSLPPT-VLAGAREAIRILSSQEGVELR-AKHQDIVAYLRNELIQIGF 404
PPT + +A+ L ++ GV R A+++ L + L +GF
Sbjct: 236 ---PPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRALGF 280
Score = 37.7 bits (88), Expect = 0.012
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 148 PKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERD 202
P + TVH TG + PL+ + +V+ HGA+ VD + + G I E D
Sbjct: 124 PDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGA---IPIDIEELD 177
>gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal
aspartate aminotransferase [Amino acid transport and
metabolism].
Length = 383
Score = 47.6 bits (114), Expect = 9e-06
Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 36/169 (21%)
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM 320
K VA + TG + PLKE+ + + +HGAL VD V ++G G + + +
Sbjct: 133 KAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLG-------GEPLKVDEWG-I 184
Query: 321 DIISGTLGKAFG---------------------NIGGYIVGTKNFIDTIRSYAAGFIFTT 359
D+ KA G + + K ++ + + +T
Sbjct: 185 DVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGS-TPYT- 242
Query: 360 SLPPT-VLAGAREAIRILSSQEGVELR-AKHQDIVAYLRNELIQIGFPV 406
PP ++ REA+ ++ +EG+E R A+H+ + LR L +G +
Sbjct: 243 --PPVNLIYALREALDLI-LEEGLEARIARHRRLAEALRAGLEALGLEL 288
Score = 39.9 bits (94), Expect = 0.002
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 149 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
K VA + TG + PLKE+ + + +HGAL VD V ++G
Sbjct: 133 KAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLG 173
>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase,
alanine-glyoxylate aminotransferase, dialkylglycine
decarboxylase, 4-aminobutyrate aminotransferase,
beta-alanine-pyruvate aminotransferase,
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, and glutamate-1-semialdehyde
2,1-aminomutase. All the enzymes belonging to this
family act on basic amino acids and their derivatives
are involved in transamination or decarboxylation.
Length = 413
Score = 46.0 bits (110), Expect = 3e-05
Identities = 60/259 (23%), Positives = 92/259 (35%), Gaps = 49/259 (18%)
Query: 240 YRHNDVNHLTQVLENMDVKIPKLVAF--ETVHSMTGAICP----LKELCEVSHQHGALTF 293
+ L + E ++ ++ A E + G I P LK L E+ +HG L
Sbjct: 170 PPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLI 229
Query: 294 VDEVHA-VGLYGEHGAGIGERDGQLHNM--DIISGTLGKAFGN---IGGYIVGTKNFIDT 347
DEV G G+ A + + DI+ TLGK G +G + G + +D
Sbjct: 230 ADEVQTGFGRTGKMFA------FEHFGVEPDIV--TLGKGLGGGLPLGAVL-GREEIMDA 280
Query: 348 IRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI--GFP 405
+ T P A A + +L EG+ A ++ YLR L ++ P
Sbjct: 281 FPAGPGLHGGTFGGNPLACAAALAVLEVLEE-EGLLENA--AELGEYLRERLRELAEKHP 337
Query: 406 -------------VEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEE 452
+E K + L KI E+G ++ P G
Sbjct: 338 LVGDVRGRGLMIGIELVKDR--ATKPPDKELAAKIIK-AALERGLLLR-------PSGGN 387
Query: 453 KIRLAPTPFHTREMIDKFV 471
IRL P T E ID+ +
Sbjct: 388 VIRLLPPLIITEEEIDEGL 406
Score = 29.1 bits (66), Expect = 6.5
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 128 YRHNDVNHLTQVLENMDVKIPKLVAF--ETVHSMTGAICP----LKELCEVSHQHGALTF 181
+ L + E ++ ++ A E + G I P LK L E+ +HG L
Sbjct: 170 PPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLI 229
Query: 182 VDEVHA-VGLYGEHGA 196
DEV G G+ A
Sbjct: 230 ADEVQTGFGRTGKMFA 245
>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP
dependent enzyme and catalyzes the committed step of
methionine biosynthesis. This pathway is unique to
microorganisms and plants, rendering the enzyme an
attractive target for the development of antimicrobials
and herbicides. This subgroup also includes
cystathionine gamma-lyases (CGL), O-acetylhomoserine
sulfhydrylases and O-acetylhomoserine thiol lyases.
CGL's are very similar to CGS's. Members of this group
are widely distributed among all three forms of life.
Length = 369
Score = 45.7 bits (109), Expect = 4e-05
Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 17/146 (11%)
Query: 62 HEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDA----GNHASMIQG 117
+ LE+ +A L EA L F+S A + L L K G H ++ G +
Sbjct: 42 VDALEKKLAALEGGEAALAFSSGMAAISTVLLALLK--AGDHVVASDDLYGGTYR----- 94
Query: 118 IRNSSAPK--IIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ 175
+ PK I D + + + + KLV E+ + T + ++ + E++H+
Sbjct: 95 LFERLLPKLGIEVTFVDPDDPEALEAAIKPE-TKLVYVESPTNPTLKVVDIEAIAELAHE 153
Query: 176 HGALTFVDEVHAVGLYG---EHGAGI 198
HGAL VD A E GA I
Sbjct: 154 HGALLVVDNTFATPYLQRPLELGADI 179
Score = 38.0 bits (89), Expect = 0.011
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 24/99 (24%)
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG---EHGAGIGERDGQL 317
KLV E+ + T + ++ + E++H+HGAL VD A E GA
Sbjct: 127 KLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQRPLELGA--------- 177
Query: 318 HNMDII--SGTLGKAFGN----IGGYIVGT-KNFIDTIR 349
DI+ S T K G I G +VG+ + I +R
Sbjct: 178 ---DIVVHSAT--KYIGGHSDVIAGVVVGSGEALIQRLR 211
>gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT)
family. This family belongs to pyridoxal phosphate
(PLP)-dependent aspartate aminotransferase superfamily
(fold I). The major groups in this CD correspond to
alanine-glyoxylate aminotransferase (AGAT),
serine-glyoxylate aminotransferase (SGAT), and
3-hydroxykynurenine transaminase (HKT). AGAT is a
homodimeric protein, which catalyses the transamination
of glyoxylate to glycine, and SGAT converts serine and
glyoxylate to hydroxypyruvate and glycine. HKT catalyzes
the PLP-dependent transamination of 3-hydroxykynurenine,
a potentially toxic metabolite of the kynurenine
pathway.
Length = 356
Score = 44.2 bits (105), Expect = 1e-04
Identities = 40/182 (21%), Positives = 71/182 (39%), Gaps = 41/182 (22%)
Query: 260 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHN 319
K V + TG + PL+ + ++ +H AL VD V ++G
Sbjct: 125 IKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFR------------- 171
Query: 320 MD------IISGTLGKAFGNIGG--YIVGTKNFIDTIRS-----------------YAAG 354
MD +G+ KA G G I ++ ++ I+ + G
Sbjct: 172 MDEWGVDVAYTGS-QKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEG 230
Query: 355 FIFTTSLPPTVLAGAREAIRILSSQEGVELR-AKHQDIVAYLRNELIQIGFPVEHTPSHI 413
+ + + P +L REA+ ++ +EG+E R A+H+ + LR L +G + P
Sbjct: 231 YSYPHTPPVNLLYALREALDLI-LEEGLENRWARHRRLAKALREGLEALGLKLLAKPELR 289
Query: 414 IP 415
P
Sbjct: 290 SP 291
Score = 35.0 bits (81), Expect = 0.087
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 148 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
K V + TG + PL+ + ++ +H AL VD V ++G
Sbjct: 125 IKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLG 166
>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V. This domain is
found in amino transferases, and other enzymes including
cysteine desulphurase EC:4.4.1.-.
Length = 370
Score = 44.2 bits (105), Expect = 1e-04
Identities = 41/169 (24%), Positives = 64/169 (37%), Gaps = 36/169 (21%)
Query: 260 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG------------------ 301
KLVA V ++TG + P++E+ +++H++GAL VD AVG
Sbjct: 140 TKLVAITHVSNVTGTVNPVEEIGKLAHEYGALVVVDAAQAVGHRPIDVQALGVDFLAFSG 199
Query: 302 --LYGEHGAGIGE---RDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFI 356
LYG GIG R L + + G GG ++ T + A
Sbjct: 200 HKLYGP--TGIGVLYGRRDLLEKLPPLLG---------GGGMIDTV-SLQETTFADAPSK 247
Query: 357 FTTSLPPTVLA-GAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGF 404
F P G A+ L+ + +++ AYL L+ I
Sbjct: 248 FEAGTPNIAGIIGLGAALDYLAEIGLEAIEKHERELAAYLYERLLAIPG 296
Score = 42.6 bits (101), Expect = 3e-04
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 148 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
KLVA V ++TG + P++E+ +++H++GAL VD AVG
Sbjct: 140 TKLVAITHVSNVTGTVNPVEEIGKLAHEYGALVVVDAAQAVG 181
>gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily. This model
represents a subfamily of NifS-related cysteine
desulfurases involved in FeS cluster formation needed
for nitrogen fixation among other vital functions. Many
cysteine desulfurases are also active as selenocysteine
lyase and/or cysteine sulfinate desulfinase. This
subfamily is associated with the six-gene SUF system
described in E. coli and Erwinia as an FeS cluster
formation system during oxidative stress. The active
site Cys is this subfamily resembles GHHC with one or
both His conserved [Biosynthesis of cofactors,
prosthetic groups, and carriers, Other].
Length = 403
Score = 43.0 bits (102), Expect = 3e-04
Identities = 42/180 (23%), Positives = 72/180 (40%), Gaps = 39/180 (21%)
Query: 252 LENMDVKI---PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD----------EVH 298
L++++ + KLVA V ++ G + P++E+ +++HQ GA VD +V
Sbjct: 149 LDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQ 208
Query: 299 AVG----------LYGEHGAGI--GERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFID 346
A+ +YG G G+ G+ + L M G GG ++ +F +
Sbjct: 209 ALDCDFYVFSGHKMYGPTGIGVLYGKEE-LLEQMPPFLG---------GGEMIAEVSFEE 258
Query: 347 TIRSYA-AGFIFTTSLPPTVLA-GAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGF 404
T +Y A F P G AI L + + A ++ AY L +I
Sbjct: 259 T--TYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEIPG 316
Score = 42.3 bits (100), Expect = 5e-04
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 140 LENMDVKI---PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAV 188
L++++ + KLVA V ++ G + P++E+ +++HQ GA VD AV
Sbjct: 149 LDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAV 200
>gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like. This family
belongs to the pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to cysteine
desulfurase (SufS) and selenocysteine lyase. SufS
catalyzes the removal of elemental sulfur and selenium
atoms from L-cysteine, L-cystine, L-selenocysteine, and
L-selenocystine to produce L-alanine; and selenocysteine
lyase catalyzes the decomposition of L-selenocysteine.
Length = 373
Score = 40.1 bits (95), Expect = 0.002
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 149 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
KLVA V ++ G I P+KE+ E++H+ G VD + G
Sbjct: 141 KLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAG 181
Score = 40.1 bits (95), Expect = 0.002
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
KLVA V ++ G I P+KE+ E++H+ G VD + G
Sbjct: 141 KLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAG 181
>gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme
metabolism].
Length = 432
Score = 40.3 bits (95), Expect = 0.002
Identities = 60/232 (25%), Positives = 86/232 (37%), Gaps = 46/232 (19%)
Query: 194 HGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPK-IIYRHNDVNHLTQVL 252
HG D L + TL +P G+ A ++ +ND+ L +
Sbjct: 146 HGHS----DSLLVKAGSGAATLGSPSSP-------GVPADVAKHTLVLPYNDLEALEEAF 194
Query: 253 ENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA---VGLYGE 305
E I V E V G + P L+ L E++ +HGAL DEV V L G
Sbjct: 195 EEYGDDIAA-VIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGA 253
Query: 306 HGA-GIGERDGQLHNMDIISGTLGKAFGNIGGY----IVGTKNFIDTI----RSYAAGFI 356
G G+ D+ TLGK G GG G ++ + Y AG
Sbjct: 254 QGYYGV--------EPDLT--TLGKIIG--GGLPIGAFGGRAEIMEQLAPLGPVYQAG-- 299
Query: 357 FTTSLPPTVLAGAREAIRILSSQEGV--ELRAKHQDIVAYLRNELIQIGFPV 406
T S P +A + L ++EGV L A + + LR + G P+
Sbjct: 300 -TLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERHGIPL 350
Score = 31.8 bits (73), Expect = 0.84
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 126 IIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTF 181
++ +ND+ L + E I V E V G + P L+ L E++ +HGAL
Sbjct: 180 LVLPYNDLEALEEAFEEYGDDIAA-VIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLI 238
Query: 182 VDEVH 186
DEV
Sbjct: 239 FDEVI 243
>gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase
and related enzymes [Amino acid transport and
metabolism].
Length = 386
Score = 39.8 bits (94), Expect = 0.002
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 12/138 (8%)
Query: 63 EKLEEDVAKL-HQKEAGLVFTSCYVANDST-----LFTLGKMIPGLHYISDAGNHASMIQ 116
E+ E +AKL ++FTS +++ G H I+ A H +++
Sbjct: 47 EEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLN 106
Query: 117 GIRNSSAPKIIYRHNDVNH-----LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE 171
R + V+ L Q+ E + LV+ ++ TG I P+ E+ E
Sbjct: 107 TCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTI-LVSIMHANNETGTIQPIAEIGE 165
Query: 172 VSHQHGALTFVDEVHAVG 189
+ + G L VD V AVG
Sbjct: 166 ICKERGILFHVDAVQAVG 183
Score = 38.3 bits (90), Expect = 0.007
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 262 LVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
LV+ ++ TG I P+ E+ E+ + G L VD V AVG
Sbjct: 144 LVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVG 183
>gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine
gamma-synthases [Amino acid transport and metabolism].
Length = 396
Score = 39.5 bits (93), Expect = 0.003
Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 23/102 (22%)
Query: 260 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG---EHGAGIGERDGQ 316
KLV ET + + + + ++ +GAL VD A + E GA
Sbjct: 150 TKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQRPLELGA-------- 201
Query: 317 LHNMDII--SGTLGKAFG----NIGGYIVGTKNFIDTIRSYA 352
DI+ S T K G +GG ++ + + +A
Sbjct: 202 ----DIVVHSAT--KYLGGHSDVLGGVVLTPNEELYELLFFA 237
Score = 38.0 bits (89), Expect = 0.009
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 20/88 (22%)
Query: 148 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG---EHGAGI------ 198
KLV ET + + + + ++ +GAL VD A + E GA I
Sbjct: 150 TKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQRPLELGADIVVHSAT 209
Query: 199 ----GERDGQLHNMDIISGTLVNPEVAI 222
G H+ D++ G ++ P +
Sbjct: 210 KYLGG------HS-DVLGGVVLTPNEEL 230
>gnl|CDD|233664 TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein,
VC1184 subfamily. This model describes a subfamily of
probable pyridoxal phosphate-dependent enzymes in the
aminotransferase class V family (pfam00266). The most
closely related characterized proteins are active as
cysteine desulfurases, selenocysteine lyases, or both;
some are involved in FeS cofactor biosynthesis and are
designated NifS. An active site Cys residue present in
those sequences, in motifs resembling GHHC or GSAC, is
not found in this family. The function of members of
this family is unknown, but seems unlike to be as an
aminotransferase [Unknown function, Enzymes of unknown
specificity].
Length = 397
Score = 39.4 bits (92), Expect = 0.004
Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 16/141 (11%)
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM 320
+LVA + G+I L + E+ H GAL VD VH Y HG D Q
Sbjct: 158 RLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVH----YAPHGL----IDVQATGA 209
Query: 321 DIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTT--------SLPPTVLAGAREA 372
D ++ + K FG G + G + + Y F + T + +LAG A
Sbjct: 210 DFLTCSAYKFFGPHMGILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAA 269
Query: 373 IRILSSQEGVELRAKHQDIVA 393
+ L+ ++ + +VA
Sbjct: 270 VDYLAGLGESANGSRRERLVA 290
Score = 36.3 bits (84), Expect = 0.030
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 149 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHG 195
+LVA + G+I L + E+ H GAL VD VH Y HG
Sbjct: 158 RLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVH----YAPHG 200
>gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent
enzyme. This family includes enzymes involved in
cysteine and methionine metabolism. The following are
members: Cystathionine gamma-lyase, Cystathionine
gamma-synthase, Cystathionine beta-lyase, Methionine
gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine
sulfhydrylase All of these members participate is
slightly different reactions. All these enzymes use PLP
(pyridoxal-5'-phosphate) as a cofactor.
Length = 382
Score = 39.1 bits (92), Expect = 0.004
Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 17/146 (11%)
Query: 62 HEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISD----AGNHASMIQG 117
+ LEE +A L EA L F+S A + L L K G H ++ G +
Sbjct: 54 RDALEERIAALEGGEAALAFSSGMAAIFAALLALLK--AGDHVVATDDLYGGTYRLF--- 108
Query: 118 IRNSSAPK--IIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ 175
P+ I D + L + + K V ET + + ++ + +++ +
Sbjct: 109 --EKVLPRFGIEVTFVDPSDLDALEAAIKPN-TKAVFLETPTNPLLKVVDIEAIAKIAKK 165
Query: 176 HGALTFVDEVHAVGLYG---EHGAGI 198
HGAL VD A E GA I
Sbjct: 166 HGALVVVDNTFASPYLQRPLELGADI 191
Score = 29.1 bits (66), Expect = 5.6
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG---EHGAGI 310
K V ET + + ++ + +++ +HGAL VD A E GA I
Sbjct: 139 KAVFLETPTNPLLKVVDIEAIAKIAKKHGALVVVDNTFASPYLQRPLELGADI 191
>gnl|CDD|224832 COG1921, SelA, Selenocysteine synthase [seryl-tRNASer selenium
transferase] [Amino acid transport and metabolism].
Length = 395
Score = 38.9 bits (91), Expect = 0.005
Identities = 37/189 (19%), Positives = 63/189 (33%), Gaps = 45/189 (23%)
Query: 268 VHS----MTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM--- 320
VHS TG + +EL E++H+ G VD G + ++
Sbjct: 163 VHSSNYGFTGML-SEEELVEIAHEKGLPVIVD------------LASGALVDKEPDLREA 209
Query: 321 -----DIISGTLGKAFGNI-GGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLA------- 367
D++S + K G G IVG K I+ ++S+ T+ A
Sbjct: 210 LALGADLVSFSGDKLLGGPQAGIIVGKKELIEKLQSHPLKRALRVD-KETLAALEAALEL 268
Query: 368 -------GAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGN 420
G R L +Q L A+ + + V+ S +IG+
Sbjct: 269 YLQPEILGERLRTLRLLTQPAEALLAQAGRLAVVELDPT-GDRLVVKIVSSE---SQIGS 324
Query: 421 PALNTKICD 429
+L ++
Sbjct: 325 GSLPDELLP 333
>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
[Amino acid transport and metabolism].
Length = 393
Score = 38.0 bits (89), Expect = 0.010
Identities = 54/220 (24%), Positives = 85/220 (38%), Gaps = 20/220 (9%)
Query: 272 TGAICP---LKELCEVSHQHGALTFVDEVHAVGLY--GEHGAGIGERDGQLHNMDIISGT 326
TGA+ LK + E++ +H + DE++ L G I E G I +
Sbjct: 176 TGAVYSKEELKAIVELAREHDIIIISDEIYE-ELVYDGAEHPSILELAGARDRT-ITINS 233
Query: 327 LGKAFGNIG---GYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGV 382
K +G G G++VG + I +R + P A A+ S E V
Sbjct: 234 FSKTYGMTGWRIGWVVGPPEELIAALRKLKSYLTSCAPTP--AQYAAIAALNGPQSDEVV 291
Query: 383 E-LRAKHQDIVAYLRNELIQI-GFPVEHTPSH--IIPIKIGNPALNTKICDMLLKEKGHY 438
E +R ++++ L L +I G V P + KI + + LL+E G
Sbjct: 292 EEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPELLDSEEFAKKLLEEAGVA 351
Query: 439 VQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW 478
V P + P GE +RL+ T E + LA +
Sbjct: 352 VVPGSGFGEPPGEGYVRLS---LATSEETLEEALRRLARF 388
>gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase. Alternate
names: histidinol-phosphate transaminase; imidazole
acetol-phosphate transaminase Histidinol-phosphate
aminotransferase is a pyridoxal-phosphate dependent
enzyme [Amino acid biosynthesis, Histidine family].
Length = 346
Score = 37.6 bits (88), Expect = 0.013
Identities = 49/216 (22%), Positives = 71/216 (32%), Gaps = 55/216 (25%)
Query: 209 DIISGTLVNPEVAI-----------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV 257
+++ + P A+ ++ I G P D LE++ V
Sbjct: 85 ELLIRAFLEPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLDEDGQLD-------LEDILV 137
Query: 258 KI---PKLVAFETVHSMTGAICPLKELCEV--SHQHGALTFVDEVHAVGLYGEHGAGIGE 312
I PKLV + ++ TG + ++ V AL VDE YGE GE
Sbjct: 138 AIDDKPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEA-----YGEFS---GE 189
Query: 313 RDG--QLHNMD--IISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTV 365
L I+ TL KAFG G GY + ID + A F +L
Sbjct: 190 PSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANAEIIDALNKVRAPF----NLSRLA 245
Query: 366 LAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ 401
A A A+R D + E+
Sbjct: 246 QAAAIAALR-------------DDDFIEKTVEEINA 268
>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA. Members
of this protein family are the archaeal form, MnfA, of
tyrosine decarboxylase, and are involved in methanofuran
biosynthesis. Members show clear homology to the
Enterococcus form, Tdc, that is involved in tyrosine
decarboxylation for resistance to acidic conditions
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 373
Score = 36.9 bits (86), Expect = 0.019
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 394 YLRNELIQIGF-PVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEE 452
YL EL +IGF PV +I+ ++ +P K L+++G YV P
Sbjct: 299 YLVEELKKIGFEPVIEPVLNIVAFEVDDPEEVRK----KLRDRGWYVSVTRCPKA----- 349
Query: 453 KIRLAPTPFHTREMIDKFVTDL 474
+R+ P TRE I++F+ DL
Sbjct: 350 -LRIVVMPHVTREHIEEFLEDL 370
>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related
aminotransferases [Amino acid transport and metabolism].
Length = 447
Score = 37.2 bits (87), Expect = 0.020
Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 33/171 (19%)
Query: 247 HLTQVLENMDVKIPKLVAF--ETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA- 299
++ + L +++V ++ A E + G I P LK L ++ +HG L DEV
Sbjct: 208 YIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTG 267
Query: 300 VGLYG-----EHGAGIGERDGQLHNMDIISGTLGKAFGN---IGGYIVGTKNFIDTIRSY 351
G G EH G+ DI+ TL K+ G + +VG +D
Sbjct: 268 FGRTGKMFAFEH-FGV--------EPDIV--TLAKSLGGGLPLSA-VVGRAEIMD---WP 312
Query: 352 AAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI 402
G T P A A + ++ +E + RA ++ YLR+ L ++
Sbjct: 313 PGGHGGTFGGNPVACAAALAVLDVI-EEENLLERA--AELGEYLRDRLEEL 360
>gnl|CDD|181005 PRK07503, PRK07503, methionine gamma-lyase; Provisional.
Length = 403
Score = 37.1 bits (86), Expect = 0.022
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 10/127 (7%)
Query: 65 LEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISD----AGNHASMIQGIRN 120
LE+ +A L EA + S A +TL+TL + PG I D A + G+
Sbjct: 70 LEQRMASLEGGEAAVALASGMGAITATLWTL--LRPGDEVIVDQTLYGCTFAFLHHGL-- 125
Query: 121 SSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALT 180
+ RH D+ + + K ++V FET + + + + E++H GA
Sbjct: 126 -GEFGVTVRHVDLTDPAALKAAISDKT-RMVYFETPANPNMRLVDIAAVAEIAHGAGAKV 183
Query: 181 FVDEVHA 187
VD +
Sbjct: 184 VVDNTYC 190
>gnl|CDD|180392 PRK06084, PRK06084, O-acetylhomoserine
aminocarboxypropyltransferase; Validated.
Length = 425
Score = 35.6 bits (82), Expect = 0.063
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 23/110 (20%)
Query: 242 HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
H+D+ LE + + K V E++ + G I ++ L + +H+HG VD A
Sbjct: 130 HDDI----AALEALIDERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATP 185
Query: 302 LYG---EHGAGIGERDGQLHNMDIISGTLGKAFG----NIGGYIVGTKNF 344
+ EHGA DI+ +L K G +IGG +V + F
Sbjct: 186 VLCRPFEHGA------------DIVVHSLTKYIGGHGTSIGGIVVDSGKF 223
Score = 30.6 bits (69), Expect = 2.2
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 130 HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
H+D+ LE + + K V E++ + G I ++ L + +H+HG VD A
Sbjct: 130 HDDI----AALEALIDERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATP 185
Query: 190 LYG---EHGAGI 198
+ EHGA I
Sbjct: 186 VLCRPFEHGADI 197
>gnl|CDD|131379 TIGR02326, transamin_PhnW, 2-aminoethylphosphonate--pyruvate
transaminase. Members of this family are
2-aminoethylphosphonate--pyruvate transaminase. This
enzyme acts on the most common type of naturally
occurring phosphonate. It interconverts
2-aminoethylphosphonate plus pyruvate with
2-phosphonoacetaldehyde plus alanine. The enzyme
phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually
encoded by an adjacent gene, then cleaves the C-P bond
of phosphonoacetaldehyde, adding water to yield
acetaldehyde plus inorganic phosphate. Species with this
pathway generally have an identified phosphonate ABC
transporter but do not also have the multisubunit C-P
lysase complex as found in Escherichia coli [Central
intermediary metabolism, Phosphorus compounds].
Length = 363
Score = 35.5 bits (82), Expect = 0.064
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 148 PKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
P + VH TG + P++ + +++H+HG +T VD + + G
Sbjct: 128 PAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFG 171
Score = 35.5 bits (82), Expect = 0.064
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 260 PKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
P + VH TG + P++ + +++H+HG +T VD + + G
Sbjct: 128 PAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFG 171
>gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional.
Length = 408
Score = 34.9 bits (80), Expect = 0.093
Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 35/158 (22%)
Query: 240 YRHNDVNHLTQVLENMDVKIPKLVAFETVH-------SMTGAICPLKELCEVSHQHGALT 292
+R+ D N + + M V E + + G + ++ LC+ QH AL
Sbjct: 168 FRYVDFNDVEALEAAMAGGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCD---QHDALL 224
Query: 293 FVDEVHAVGLYGEHGAGIGERDGQLHNM-------DIISGTLGKAFGN---IGGYIVGTK 342
+DE+ G+G R G L DI+ TL KA G IG + G K
Sbjct: 225 VLDEIQ---------CGMG-RTGTLFAHWQEQVTPDIV--TLAKALGGGFPIGAMLAGPK 272
Query: 343 NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQE 380
+T++ A G F + P A AR A+R L+S +
Sbjct: 273 -VAETMQFGAHGTTFGGN--PLAAAVARVALRKLASPQ 307
>gnl|CDD|132443 TIGR03402, FeS_nifS, cysteine desulfurase NifS. Members of this
protein family are NifS, one of several related families
of cysteine desulfurase involved in iron-sulfur (FeS)
cluster biosynthesis. NifS is part of the NIF system,
usually associated with other nif genes involved in
nitrogenase expression and nitrogen fixation. The
protein family is given a fairly broad interpretation
here. It includes a clade nearly always found in
extended nitrogen fixation genomic regions, plus a
second clade more closely related to the first than to
IscS and also part of NifS-like/NifU-like systems. This
model does not extend to a more distantly clade found in
the epsilon proteobacteria such as Helicobacter pylori,
also named NifS in the literature, built instead in
TIGR03403.
Length = 379
Score = 33.7 bits (78), Expect = 0.20
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVG 189
TG I P++E+ E++ + GAL D V AVG
Sbjct: 149 TGTIFPIEEIGEIAKERGALFHTDAVQAVG 178
Score = 33.7 bits (78), Expect = 0.20
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 272 TGAICPLKELCEVSHQHGALTFVDEVHAVG 301
TG I P++E+ E++ + GAL D V AVG
Sbjct: 149 TGTIFPIEEIGEIAKERGALFHTDAVQAVG 178
>gnl|CDD|181766 PRK09295, PRK09295, bifunctional cysteine
desulfurase/selenocysteine lyase; Validated.
Length = 406
Score = 33.6 bits (77), Expect = 0.22
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 149 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAV 188
+L+A V ++ G PL E+ ++HQHGA VD AV
Sbjct: 166 RLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAV 205
Score = 33.6 bits (77), Expect = 0.22
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAV 300
+L+A V ++ G PL E+ ++HQHGA VD AV
Sbjct: 166 RLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAV 205
>gnl|CDD|215519 PLN02960, PLN02960, alpha-amylase.
Length = 897
Score = 33.7 bits (77), Expect = 0.29
Identities = 43/180 (23%), Positives = 66/180 (36%), Gaps = 36/180 (20%)
Query: 149 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHA-------VGL----------- 190
K+ F V S G K L + +H G L F+D VH+ VGL
Sbjct: 451 KVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYF 510
Query: 191 -YGE--HGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH 247
G+ H G R + + +++ L N + + G + S ++Y HN
Sbjct: 511 HSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFAS 570
Query: 248 LTQVLE-------NMDVKIPKLVAFETVHSMTGAICPLKE-------LCEVSHQHGALTF 293
T L+ + D I ++A E +H + I + E LCE G L F
Sbjct: 571 FTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIAEDATFYPGLCE-PTSQGGLGF 629
>gnl|CDD|130395 TIGR01328, met_gam_lyase, methionine gamma-lyase. This model
describes a methionine gamma-lyase subset of a family of
PLP-dependent trans-sulfuration enzymes. The member from
the parasite Trichomonas vaginalis is described as
catalyzing alpha gamma- and alpha-beta eliminations and
gamma-replacement reactions on methionine, cysteine, and
some derivatives. Likewise, the enzyme from Pseudomonas
degrades cysteine as well as methionine [Energy
metabolism, Amino acids and amines].
Length = 391
Score = 32.9 bits (75), Expect = 0.38
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 10/127 (7%)
Query: 65 LEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAG----NHASMIQGIRN 120
LE +A L EA + +S A +TL T+ K G H ISD A + +
Sbjct: 64 LEGRIAFLEGTEAAVATSSGMGAIAATLLTILK--AGDHLISDECLYGCTFALLEHALTK 121
Query: 121 SSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALT 180
I ++ +V ++ K+V FET + T + ++ +C +H G
Sbjct: 122 FG---IQVDFINMAIPEEVKAHIKDNT-KIVYFETPANPTMKLIDMERVCRDAHSQGVKV 177
Query: 181 FVDEVHA 187
VD A
Sbjct: 178 IVDNTFA 184
>gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and
cobyric acid decarboxylase [Amino acid transport and
metabolism].
Length = 356
Score = 33.1 bits (76), Expect = 0.38
Identities = 51/247 (20%), Positives = 87/247 (35%), Gaps = 29/247 (11%)
Query: 218 PEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP 277
I A + G P +R + L + + KLV ++ TG + P
Sbjct: 110 SMYEIAAQL-AGAEVVKVPLKEFRLDLDAILAAIRDK-----TKLVFLCNPNNPTGTLLP 163
Query: 278 LKELCEV--SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG 335
+EL + + G L +DE A Y E + I+ T KAFG G
Sbjct: 164 REELRALLEALPEGGLVVIDE--A---YIEFSPESSLELLKYPPNLIVLRTFSKAFGLAG 218
Query: 336 ---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ-DI 391
GY + I + F S P AI L + +E + +
Sbjct: 219 LRVGYAIANPELIAALN--KVRPPFNVSSP-----ALAAAIAALRDADYLEESVERIREE 271
Query: 392 VAYLRNELIQIG-FPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVG 450
L L +G F V + ++ + +++ + A + + LLK KG V+ + +
Sbjct: 272 RERLYAALKALGLFGVFPSQANFVLVRVPD-AEAAALAEALLK-KGILVRDCSSV--GLL 327
Query: 451 EEKIRLA 457
+R+
Sbjct: 328 PGYLRIT 334
>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional.
Length = 371
Score = 32.9 bits (76), Expect = 0.38
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 11/82 (13%)
Query: 394 YLRNELIQIGFPVEHTPS-HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEE 452
+L EL + GF P +I+ NP ++ + L+E+G V P E
Sbjct: 294 WLAEELKERGFEPVIEPVLNIVAFDDPNP---DEVRE-KLRERGWRVSVTRCP------E 343
Query: 453 KIRLAPTPFHTREMIDKFVTDL 474
+R+ P TRE I+ F+ DL
Sbjct: 344 ALRIVCMPHVTREHIENFLEDL 365
>gnl|CDD|235807 PRK06460, PRK06460, hypothetical protein; Provisional.
Length = 376
Score = 32.9 bits (75), Expect = 0.38
Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 21/147 (14%)
Query: 63 EKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMI------- 115
+L + + +L E G+ F+S A +T L K PG + H M
Sbjct: 48 LELTKKIVELENAEMGVAFSSGMGAISTTALALLK--PG----NSVLVHRDMFGRSYRFF 101
Query: 116 -QGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSH 174
++N N ++E K +V E + + + + EL +V
Sbjct: 102 TDYLKNWGVNVDASNPGSDN----IIEKAKSKRYDVVFVENITNPLLRVVDITELSKVCK 157
Query: 175 QHGALTFVDEVHAVGLYG---EHGAGI 198
++G++ VD + + E GA I
Sbjct: 158 ENGSILIVDATFSTPINQKPLELGADI 184
>gnl|CDD|163191 TIGR03235, DNA_S_dndA, cysteine desulfurase DndA. This model
describes DndA, a protein related to IscS and part of a
larger family of cysteine desulfurases. It is encoded,
typically, divergently from a conserved, sparsely
distributed operon for sulfur modification of DNA. This
modification system is designated dnd, after the
phenotype of DNA degradation during electrophoresis. The
system is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndB is described
as a putative ATPase [DNA metabolism,
Restriction/modification].
Length = 353
Score = 32.8 bits (75), Expect = 0.41
Identities = 41/169 (24%), Positives = 66/169 (39%), Gaps = 21/169 (12%)
Query: 262 LVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMD 321
LV+ V++ TG+I P++E+ EV H A VD VG D +D
Sbjct: 141 LVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVG----KITVDLSAD----RID 192
Query: 322 IISGTLGKAFG--NIGGYIVGTKNFIDTIRSYAAGF-------IFTTSLPPTVLAGAREA 372
+IS + K +G IG ++ K F + +LP ++ G EA
Sbjct: 193 LISCSGHKIYGPKGIGALVIR-KRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEA 251
Query: 373 IRIL---SSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKI 418
I + V+LRA + L+ +++ T HI+ I
Sbjct: 252 AEIARRNAQAWEVKLRAMRNQLRDALQTLGVKLNGDPAETIPHILNFSI 300
Score = 30.2 bits (68), Expect = 3.1
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 150 LVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
LV+ V++ TG+I P++E+ EV H A VD VG
Sbjct: 141 LVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVG 180
>gnl|CDD|132444 TIGR03403, nifS_epsilon, cysteine desulfurase, NifS family, epsilon
proteobacteria type. Members of this family are the
NifS-like cysteine desulfurase of the epsilon division
of the Proteobacteria, similar to the NifS protein of
nitrogen-fixing bacteria. Like NifS, and unlike IscS,
this protein is found as part of a system of just two
proteins, a cysteine desulfurase and a scaffold, for
iron-sulfur cluster biosynthesis. This protein is called
NifS by Olsen, et al. (PMID:11123951), so we use this
designation.
Length = 382
Score = 32.9 bits (75), Expect = 0.42
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 150 LVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
LV+ ++ TG I P+KE+ E+ + G L D V A+G
Sbjct: 143 LVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIG 182
Score = 32.9 bits (75), Expect = 0.42
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 262 LVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
LV+ ++ TG I P+KE+ E+ + G L D V A+G
Sbjct: 143 LVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIG 182
>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 32.4 bits (74), Expect = 0.58
Identities = 38/144 (26%), Positives = 55/144 (38%), Gaps = 32/144 (22%)
Query: 265 FETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM 320
E + G I P K+L ++ +HG L VDEV +G+G R G+ +
Sbjct: 210 AEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQ---------SGLG-RTGKWFAI 259
Query: 321 -------DIISGTLGKAFGN---IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAR 370
DII TLGK G I +G +D++ FT S P A A
Sbjct: 260 EHFGVEPDII--TLGKPLGGGLPISA-TIGRAEIMDSLP--PLAHAFTLSGNPVASAAAL 314
Query: 371 EAIRILSSQEGVELRAKHQDIVAY 394
I + E L + + + Y
Sbjct: 315 AVIEEI---EEKNLLKRAEKLGNY 335
>gnl|CDD|221601 pfam12489, ARA70, Nuclear coactivator. This domain family is found
in eukaryotes, and is typically between 127 and 138
amino acids in length. This family is ARA70, a nuclear
coactivator which interacts with peroxisome
proliferator-activated receptor gamma (PPARgamma) to
regulate transcription and the addition of the PPARgamma
ligand (prostaglandin J2) enhances this interaction.
Length = 131
Score = 30.6 bits (69), Expect = 0.74
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 20 TCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKL-EEDVAKLHQKEAG 78
+ +L S Q G K L L K N S + E + ++ +
Sbjct: 41 SLQLQSAQLHKAWGQLKDLEHWLLKSQQIRKRNSNSSSSQFSIELEKLSSLELKPEESSD 100
Query: 79 LVFTS 83
+FT+
Sbjct: 101 WLFTA 105
>gnl|CDD|236146 PRK08064, PRK08064, cystathionine beta-lyase; Provisional.
Length = 390
Score = 32.1 bits (73), Expect = 0.76
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Query: 56 SGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYI--SDA-GNHA 112
SGN E LE+ +A+L G F S A + L K G H + D G
Sbjct: 51 SGNPT-REALEDIIAELEGGTKGFAFASGMAAISTAFLLLSK---GDHVLISEDVYGGTY 106
Query: 113 SMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV 172
MI + + I + D+ +L +V +N+ KL ET + + ++ + ++
Sbjct: 107 RMITEVLSRFG--IEHTFVDMTNLEEVAQNIKPNT-KLFYVETPSNPLLKVTDIRGVVKL 163
Query: 173 SHQHGALTFVD 183
+ G LTFVD
Sbjct: 164 AKAIGCLTFVD 174
>gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase. This
enzyme, glutamate-1-semialdehyde-2,1-aminomutase
(glutamate-1-semialdehyde aminotransferase, GSA
aminotransferase), contains a pyridoxal phosphate
attached at a Lys residue at position 283 of the seed
alignment. It is in the family of class III
aminotransferases [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 423
Score = 31.9 bits (73), Expect = 0.79
Identities = 58/282 (20%), Positives = 96/282 (34%), Gaps = 71/282 (25%)
Query: 238 IIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE----LCEVSHQHGALTF 293
++ +ND+ L +V E +I ++ E V G + P E L ++ ++G+L
Sbjct: 175 LVLPYNDLEALEEVFEEYGEEIAGVI-VEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLI 233
Query: 294 VDEV---------HAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGY----IVG 340
DEV A +G D+ TLGK G GG G
Sbjct: 234 FDEVMTGFRVALGGAQEYFGVEP-------------DLT--TLGKIIG--GGLPVGAFGG 276
Query: 341 TKNFIDTIRS----YAAGFIFTTSLPPTVLAGAREAIRILSSQEGV--ELRAKHQDIVAY 394
+ ++ + Y AG T S P +A +++L +EGV EL + +
Sbjct: 277 RREIMERLAPEGPVYQAG---TLSGNPLAMAAGLATLKLL-DEEGVYTELDELAKRLAEG 332
Query: 395 LRNELIQIGFPVEHT-PSHIIPIKIGNPALN----TKICD----------MLLKEKGHYV 439
L L G P + + + K D ML +KG ++
Sbjct: 333 LSEVLEDTGIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEML--DKGVFL 390
Query: 440 QPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481
P + + HT E I+ + V+ L
Sbjct: 391 PPSQFEACFLSAA---------HTEEDIENTIEAAEEVFAEL 423
Score = 28.8 bits (65), Expect = 7.0
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 126 IIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE----LCEVSHQHGALTF 181
++ +ND+ L +V E +I ++ E V G + P E L ++ ++G+L
Sbjct: 175 LVLPYNDLEALEEVFEEYGEEIAGVI-VEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLI 233
Query: 182 VDEV 185
DEV
Sbjct: 234 FDEV 237
>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino
acid transport and metabolism].
Length = 404
Score = 31.8 bits (73), Expect = 0.80
Identities = 53/221 (23%), Positives = 76/221 (34%), Gaps = 66/221 (29%)
Query: 278 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM-------DIISGTLGKA 330
L+ELC+ +HGAL +DEV G+G R G+L DI+ TL KA
Sbjct: 210 LRELCD---EHGALLILDEVQ---------TGLG-RTGKLFAYEHYGVEPDIL--TLAKA 254
Query: 331 FGN---IGGYIVGTKNFIDTIRSYAAGFIF-----TTSLPPTVLAGAREAIRILSSQEGV 382
G IG + + A+ F T P A A + +L + +
Sbjct: 255 LGGGFPIGAMLATEE--------IASAFTPGDHGSTFGGNPLACAVALAVLEVLLEEGLL 306
Query: 383 E-LRAKHQDIVAYLRNELIQIGFPVEHTPSH--------IIPIKIGNPALNTKICDMLLK 433
E +R K YL L ++ P +I I++ P I L +
Sbjct: 307 ENVREKG----EYLLQRLREL---KRRYPLVKEVRGRGLMIGIELKEPYRARDIVRALRE 359
Query: 434 EKGHYVQPINYPTVPVGEEKIRLAP----TPFHTREMIDKF 470
E +P G IR P T E +D
Sbjct: 360 EG--------VLVLPAGPNVIRFLPPLVITEEEIDEALDAL 392
>gnl|CDD|225162 COG2253, COG2253, Uncharacterized conserved protein [Function
unknown].
Length = 258
Score = 31.3 bits (71), Expect = 0.87
Identities = 22/126 (17%), Positives = 36/126 (28%), Gaps = 11/126 (8%)
Query: 27 QYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLF----HEKLEE--DVAKLHQKEAGLV 80
Y + + R + E+ R S +L V LV
Sbjct: 72 DYNLSEDDRDLIDTVTERSEFTVSEHR-ESRRHYPLHYVDTELGYNRIVLDHEFYTRLLV 130
Query: 81 FTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVL 140
VA F I L S A ++ + + + +Y DV L +
Sbjct: 131 LVEENVAFIKVPFHHSYPITMLRVYSLEEIFAEKLRALFQRTLARDLY---DVFKLLD-M 186
Query: 141 ENMDVK 146
E ++K
Sbjct: 187 EKDEIK 192
>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional.
Length = 377
Score = 31.9 bits (73), Expect = 0.89
Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 33/120 (27%)
Query: 243 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP-----LKELCEVSHQHGALTFVDEV 297
ND+ L +V M+ ++ V E V G I P L+E+ + + GAL +DEV
Sbjct: 155 NDIKALKEV---MNEEVAA-VMLEVVQGEGGVI-PADPAFLQEVQTLCKKFGALLIIDEV 209
Query: 298 HAVGLYGEHGAGIGERDGQLH-------NMDIISGTLGKAFGNIG---GYIVGTKNFIDT 347
GIG R G L + DI+ T+ K GN G G ++G K
Sbjct: 210 Q---------TGIG-RTGTLFAYEQFGLDPDIV--TVAKGLGN-GIPVGAMIGKKELGTA 256
>gnl|CDD|236103 PRK07810, PRK07810, O-succinylhomoserine sulfhydrylase;
Provisional.
Length = 403
Score = 31.6 bits (72), Expect = 0.94
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 263 VAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY---GEHGAGIGERDGQLHN 319
V FET + ++ + + E++H GA +D V A L GA + G H
Sbjct: 159 VFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRGLPLGADVVVYSGTKH- 217
Query: 320 MDIISGTLGKAFGNIGGYIVGTKNFID 346
I G G+ +GG I+G + +ID
Sbjct: 218 ---IDGQ-GRV---LGGAILGDREYID 237
>gnl|CDD|215685 pfam00060, Lig_chan, Ligand-gated ion channel. This family
includes the four transmembrane regions of the
ionotropic glutamate receptors and NMDA receptors.
Length = 268
Score = 31.5 bits (72), Expect = 0.94
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 79 LVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASM-IQGIRNSSAPKIIYRHND 132
L+ S Y AN + T+ +M + + D + +R S + +
Sbjct: 77 LILLSSYTANLAAFLTVERMQSPIQSLEDLAKQNKIGYGTLRGGSTFEFFKESKN 131
>gnl|CDD|236202 PRK08249, PRK08249, cystathionine gamma-synthase; Provisional.
Length = 398
Score = 31.6 bits (72), Expect = 0.97
Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 12/128 (9%)
Query: 65 LEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAP 124
EE V L EA F++ A +TL+T + PG +S + G N
Sbjct: 69 FEEKVRILEGAEAATAFSTGMAAISNTLYTF--LKPGDRVVSIKDTY-----GGTNKIFT 121
Query: 125 KIIYRHN-DV----NHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGAL 179
+ + R DV + +E K L+ ET + T I ++ L + + GAL
Sbjct: 122 EFLPRMGVDVTLCETGDHEQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGAL 181
Query: 180 TFVDEVHA 187
VD A
Sbjct: 182 VVVDNTFA 189
Score = 30.5 bits (69), Expect = 2.0
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 13/95 (13%)
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM 320
L+ ET + T I ++ L + + GAL VD A I + L
Sbjct: 151 DLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFA--------TPINQNPLAL-GA 201
Query: 321 DII--SGT--LGKAFGNIGGYIVGTKNFIDTIRSY 351
D++ S T L +GG + G+K ++ + Y
Sbjct: 202 DLVIHSATKFLSGHADALGGVVCGSKELMEQVYHY 236
>gnl|CDD|132155 TIGR03111, glyc2_xrt_Gpos1, putative glycosyltransferase,
exosortase G-associated. Members of this protein family
are probable glycosyltransferases of family 2, whose
genes are near those for the exosortase homolog XrtG
(TIGR03110), which is restricted to Gram-positive
bacteria. Other genes in the conserved gene neighborhood
include a 6-pyruvoyl tetrahydropterin synthase homolog
(TIGR03112) and an uncharacterized intergral membrane
protein (TIGR03766).
Length = 439
Score = 31.6 bits (72), Expect = 1.0
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 97 KMIPGLH--YI-SDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAF 153
PGL Y+ SD G ++ I NS II+ +D ++NM + F
Sbjct: 103 NEFPGLSLRYMNSDQGKAKALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTR------F 156
Query: 154 ET---VHSMTGAICPLKELCEVSH 174
E +H+MTG I KEL E +
Sbjct: 157 ENNPDIHAMTGVILTDKELIEKTK 180
Score = 28.9 bits (65), Expect = 7.5
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Query: 229 GIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFET---VHSMTGAICPLKELCEVS 285
I NS II+ +D ++NM + FE +H+MTG I KEL E +
Sbjct: 126 AIYNSIGKYIIHIDSDGKLHKDAIKNMVTR------FENNPDIHAMTGVILTDKELIEKT 179
Query: 286 H 286
Sbjct: 180 K 180
>gnl|CDD|178782 PLN03244, PLN03244, alpha-amylase; Provisional.
Length = 872
Score = 31.5 bits (71), Expect = 1.4
Identities = 42/176 (23%), Positives = 66/176 (37%), Gaps = 35/176 (19%)
Query: 149 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHA-------VGL----------- 190
K+ F S G K L + +H G L F+D VH+ VGL
Sbjct: 426 KVTNFFAASSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYF 485
Query: 191 -YGE--HGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH 247
G+ H G R + ++D++ + N I I G + S +IY HN
Sbjct: 486 HTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGFAS 545
Query: 248 LTQVLE-------NMDVKIPKLVAFETVHSMTGAICPLKE-------LCEVSHQHG 289
L+ + D + ++A E +H++ I + E LCE + Q G
Sbjct: 546 FNGDLDDYCNQYVDKDALMYLILANEILHALHPKIITIAEDATYYPGLCEPTSQGG 601
>gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding
HTH domain and an aminotransferase domain (MocR family)
and their eukaryotic orthologs [Transcription / Amino
acid transport and metabolism].
Length = 459
Score = 31.1 bits (71), Expect = 1.4
Identities = 44/264 (16%), Positives = 80/264 (30%), Gaps = 47/264 (17%)
Query: 244 DVNHLTQVLENMDVK----IPKLVAFETVHSMTGAICPL---KELCEVSHQHGALTFVDE 296
D L + L K P T + TG L K L ++ ++ L D+
Sbjct: 214 DPEALEEALAQWKPKAVYVTP------TFQNPTGVTMSLERRKALLALAEKYDVLIIEDD 267
Query: 297 VHAVGLYGEHGAGIGERDGQLHNMD-----IISGTLGK----AFGNIGGYIVGTKNFIDT 347
YGE L +D I G+ K GY+V I+
Sbjct: 268 Y-----YGELRYDGPPPP-PLKALDAPGRVIYLGSFSKTLAPGLR--LGYVVAPPELIEK 319
Query: 348 IRSYAAGFIFTTSLPPT-VLA------GAREAIRILSSQEGVELRAKHQDIVAYLRNELI 400
+ S LA +R L E + ++ L E +
Sbjct: 320 LLRLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRR----EYARRRDALLEALA-EYL 374
Query: 401 QIGFPVEHTPSHI-IPIKIGNPALNTKICDMLLKEKGHYVQPI--NYPTVPVGEEKIRLA 457
+ + +++ ++ + EKG V P+ + +RL+
Sbjct: 375 PELATWTRPEGGLFLWLEL-PEGIDARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLS 433
Query: 458 PTPFHTREMIDKFVTDLLAVWKSL 481
+ + E I++ + L A+ +
Sbjct: 434 FS-SPSEEEIEEGIKRLAALLREA 456
>gnl|CDD|180685 PRK06767, PRK06767, methionine gamma-lyase; Provisional.
Length = 386
Score = 31.0 bits (70), Expect = 1.6
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 4/120 (3%)
Query: 65 LEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAP 124
EE +A L E L F S A +TL K G H I G + G
Sbjct: 66 FEERMAVLEGGEEALAFGSGMAAISATLIGFLK--AGDHIICSNGLYGCTY-GFLEVLEE 122
Query: 125 KIIYRHNDVNHLT-QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD 183
K + H+ + T +EN KL+ ET + T + LK++ V+ ++G L VD
Sbjct: 123 KFMITHSFCDMETEADIENKIRPNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVD 182
>gnl|CDD|180471 PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-aminomutase;
Provisional.
Length = 431
Score = 30.8 bits (70), Expect = 1.6
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 16/113 (14%)
Query: 226 MIQGI-RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLV--AFETVHSMTGAICPLKELC 282
M GI + SA + +R+ND+ L + E+ +I ++ G + ++ LC
Sbjct: 154 MSAGIPASVSALTVTFRYNDIASLEALFEDHPGRIACVILEPATADEPQDGFLHEVRRLC 213
Query: 283 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS--GTLGKAFGN 333
H++GAL +DE+ + GA I+ GKA GN
Sbjct: 214 ---HENGALFILDEMITGFRWHMRGAQ--------KLYGIVPDLSCFGKALGN 255
Score = 29.6 bits (67), Expect = 4.5
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 114 MIQGI-RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLV--AFETVHSMTGAICPLKELC 170
M GI + SA + +R+ND+ L + E+ +I ++ G + ++ LC
Sbjct: 154 MSAGIPASVSALTVTFRYNDIASLEALFEDHPGRIACVILEPATADEPQDGFLHEVRRLC 213
Query: 171 EVSHQHGALTFVDE 184
H++GAL +DE
Sbjct: 214 ---HENGALFILDE 224
>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein;
Provisional.
Length = 400
Score = 30.8 bits (70), Expect = 1.8
Identities = 67/270 (24%), Positives = 108/270 (40%), Gaps = 65/270 (24%)
Query: 242 HNDVNHLTQVLENMDVKIPKLVAF--ETVHSMTGAICP----LKELCEVSHQHGALTFVD 295
+NDV L ++L++ P + AF E + G I P LK++ E+ ++ L VD
Sbjct: 164 YNDVEALEKLLQD-----PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVD 218
Query: 296 EVHAVGLYGEHGAGIGERDGQL----HNM---DIISGTLGKAFGNIGGY-----IVGTKN 343
E+ G+G R G+L H DI+ LGKA GG ++ +
Sbjct: 219 EIQT---------GLG-RTGKLLAHDHEGVKPDIV--LLGKALS--GGLYPISAVLANDD 264
Query: 344 FIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIG 403
+ I+ G + + P A A EA+ +L +E + A Q + R+ L ++
Sbjct: 265 VMLVIKPGEHGSTYGGN--PLACAVAVEALEVLK-EEKLAENA--QRLGEVFRDGLKEL- 318
Query: 404 FPVEHTPSHIIPIKIGNPALNTKICD-----------MLLKEKGHYVQPINYPTVPVGEE 452
+ I+ G LN + D + LKE G P +
Sbjct: 319 ---LKKSPWVKEIR-GKGLLNAIVFDHSDGVNAWDLCLKLKENG-------LLAKPTHDN 367
Query: 453 KIRLAPTPFHTREMIDKFVTDLLAVWKSLD 482
IR AP T+E +D+ + + V KS D
Sbjct: 368 IIRFAPPLVITKEQLDQALEIIKKVLKSFD 397
>gnl|CDD|215460 PLN02855, PLN02855, Bifunctional selenocysteine lyase/cysteine
desulfurase.
Length = 424
Score = 30.9 bits (70), Expect = 1.8
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAV 188
DV L ++L KLVA V ++ G+I P++++ +H GA VD +V
Sbjct: 162 DVEQLKELLSEK----TKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSV 214
Score = 30.9 bits (70), Expect = 1.8
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAV 300
DV L ++L KLVA V ++ G+I P++++ +H GA VD +V
Sbjct: 162 DVEQLKELLSEK----TKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSV 214
>gnl|CDD|188131 TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sulfhydrylase. This
model describes O-succinylhomoserine sulfhydrylase, one
of several related pyridoxal phosphate-dependent enzymes
of cysteine and methionine metabolism. This enzyme is
part of an alternative pathway of homocysteine
biosynthesis, a step in methionine biosynthesis [Amino
acid biosynthesis, Aspartate family].
Length = 381
Score = 30.6 bits (69), Expect = 2.1
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 18/132 (13%)
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG---EHGAGIGERDGQL 317
K V ET + + + + E++H GA VD V A L + GA +
Sbjct: 141 KAVFVETPSNPLQELVDIAAVAELAHAAGAKVVVDNVFATPLLQQPLKLGADVVVYSATK 200
Query: 318 HNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS 377
H I G G+ +GG I+G++ ++D + T P + A +L
Sbjct: 201 H----IDGQ-GRV---LGGAILGSEEYMD---EPVQKLLRHTG--PAM--SPFNAWVLLK 245
Query: 378 SQEGVELRAKHQ 389
E + +R +HQ
Sbjct: 246 GLETLAIRVQHQ 257
Score = 28.7 bits (64), Expect = 9.0
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 149 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG---EHGAGI 198
K V ET + + + + E++H GA VD V A L + GA +
Sbjct: 141 KAVFVETPSNPLQELVDIAAVAELAHAAGAKVVVDNVFATPLLQQPLKLGADV 193
>gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase.
Length = 288
Score = 30.3 bits (69), Expect = 2.2
Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 27/140 (19%)
Query: 64 KLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNH--------ASMI 115
+LE+ VA+L KEA L S +AN L + G I H + +
Sbjct: 36 RLEDRVAELFGKEAALFVPSGTMANQLALMAHCR--RGDEVICGEPAHIYFDETGGHAEL 93
Query: 116 QG-----IRNSSAPKIIYRHNDVNHLTQVLENMDVKI---PKLVAFE-TVHSMTGAICP- 165
G + + A K+ D+ L + + L++ E T +S G +
Sbjct: 94 GGAQPVPLPGAEAGKL-----DLEDLEAAIRPVGDIHFPPTGLISLENTHNSAGGQVVSL 148
Query: 166 --LKELCEVSHQHGALTFVD 183
L+E+ ++ +HG +D
Sbjct: 149 EELREIRAIAREHGIPLHLD 168
>gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated.
Length = 378
Score = 30.5 bits (69), Expect = 2.2
Identities = 31/140 (22%), Positives = 50/140 (35%), Gaps = 16/140 (11%)
Query: 278 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG-- 335
L+E+ + +H + DE++A Y E G +ISG K F G
Sbjct: 176 LEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISG-FSKGFAMTGWR 234
Query: 336 -GYIVGTKNFIDT---IRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVE-LRAKHQD 390
G+I F + I Y+ P A EA+R + + V +R ++
Sbjct: 235 LGFIAAPVYFSEAMLKIHQYS-----MMCAPTMAQFAALEALR--AGNDDVIRMRDSYRK 287
Query: 391 IVAYLRNELIQIGFPVEHTP 410
+ +IG H P
Sbjct: 288 RRNFFVTSFNEIGLTC-HVP 306
>gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein.
This model describes a subfamily of probable pyridoxal
phosphate-dependent enzymes in the aminotransferase
class V family. Related families contain members active
as cysteine desulfurases, selenocysteine lyases, or
both. The members of this family form a distinct clade
and all are shorter at the N-terminus. The function of
this subfamily is unknown [Unknown function, Enzymes of
unknown specificity].
Length = 376
Score = 30.4 bits (69), Expect = 2.5
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 148 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL 190
KL+ ++TG I P++E+ E++ ++G +D G+
Sbjct: 138 TKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGV 180
Score = 30.4 bits (69), Expect = 2.5
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 260 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL 302
KL+ ++TG I P++E+ E++ ++G +D G+
Sbjct: 138 TKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGV 180
>gnl|CDD|184076 PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase;
Provisional.
Length = 368
Score = 29.9 bits (68), Expect = 3.0
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 156 VHSMTGA--ICPLKELCEVSHQHGALTFVD 183
VH T + PL E+ V+ +HG VD
Sbjct: 138 VHCETTTGILNPLDEIAAVAKRHGKRLIVD 167
Score = 29.9 bits (68), Expect = 3.0
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 268 VHSMTGA--ICPLKELCEVSHQHGALTFVD 295
VH T + PL E+ V+ +HG VD
Sbjct: 138 VHCETTTGILNPLDEIAAVAKRHGKRLIVD 167
>gnl|CDD|225428 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid
transport and metabolism].
Length = 426
Score = 29.9 bits (68), Expect = 3.0
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 19/91 (20%)
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG---EHGAGIGERDGQL 317
K V ET+ + + ++ + E++H+HG VD A EHGA
Sbjct: 149 KAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYLCRPIEHGA--------- 199
Query: 318 HNMDIISGTLGKAFG----NIGGYIVGTKNF 344
DI+ + K G IGG IV F
Sbjct: 200 ---DIVVHSATKYIGGHGTAIGGVIVDGGKF 227
>gnl|CDD|168478 PRK06234, PRK06234, methionine gamma-lyase; Provisional.
Length = 400
Score = 29.8 bits (67), Expect = 3.4
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 16/112 (14%)
Query: 244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH--GALTFVDEVHAVG 301
D ++L +V N K+V ET + T + +K + ++H++ L FVD
Sbjct: 135 DTSNLEEV-RNALKANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTP 193
Query: 302 LYGEHGAGIGERDGQLHNMDIISGTLGKAFGN----IGGYIVGTKNFIDTIR 349
+R QL D++ + K I G++VG + FI+ ++
Sbjct: 194 YI--------QRPLQL-GADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVK 236
>gnl|CDD|213798 TIGR03342, dsrC_tusE_dsvC, sulfur relay protein, TusE/DsrC/DsvC
family. Members of this protein family may be described
as TusE, a partner to TusBCD in a sulfur relay system
for 2-thiouridine biosynthesis, a tRNA base modification
process. Other members are DsrC, a functionally similar
protein in species where the sulfur relay system exists
primarily for sulfur metabolism rather than tRNA base
modification. Some members of this family are known
explicitly as the gamma subunit of sulfite reductases.
Length = 108
Score = 28.4 bits (64), Expect = 3.5
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 371 EAIRILSSQEGVELRAKHQDIVAYLRN 397
+ L+ +EG+EL H +++ +LR+
Sbjct: 25 DVAEALAEEEGIELTEAHWEVINFLRD 51
>gnl|CDD|146805 pfam04358, DsrC, DsrC like protein. Family member dsvC has been
observed to co-purify with Desulfovibrio vulgaris
dissimilatory sulfite reductase, and many members of
this family are annotated as the third (gamma) subunit
of dissimilatory sulphite reductase. However, this
protein appears to be only loosely associated to the
sulfite reductase, which suggests that DsrC may not be
an integral part of the dissimilatory sulphite
reductase. Members of this family are found in organisms
such as E. coli and H. influenzae which do not contain
dissimilatory sulphite reductases but can synthesise
assimilatory sirohaem sulphite and nitrite reductases.
It is speculated that DsrC may be involved in the
assembly, folding or stabilisation of sirohaem proteins.
The strictly conserved cysteine in the C terminus
suggests that DsrC may have a catalytic function in the
metabolism of sulphur compounds.
Length = 109
Score = 28.3 bits (64), Expect = 3.6
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 371 EAIRILSSQEGVELRAKHQDIVAYLRN 397
E L+++EG+EL +H +++ +LR+
Sbjct: 26 EVAEALAAEEGIELTEEHWEVIRFLRD 52
>gnl|CDD|234269 TIGR03588, PseC, UDP-4-keto-6-deoxy-N-acetylglucosamine
4-aminotransferase. This family of enzymes are
aminotransferases of the pfam01041 family involved in
the biosynthesis of pseudaminic acid. They convert
UDP-4-keto-6-deoxy-N-acetylglucosamine into
UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic
acid has a role in surface polysaccharide in Pseudomonas
as well as in the modification of flagellin in
Campylobacter and Helicobacter species.
Length = 380
Score = 29.6 bits (67), Expect = 4.0
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG-L 190
D + L + L K+PK + V G ++ + ++ +HG D HA+G
Sbjct: 106 DEDALEKKLAAAKGKLPKAIV--PVD-FAGKSVDMQAIAALAKKHGLKIIEDASHALGAE 162
Query: 191 YGEHGAGIGERDGQLHNMDIIS 212
YG G + + + + S
Sbjct: 163 YGGKPVG----NCRYADATVFS 180
Score = 29.6 bits (67), Expect = 4.0
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG-L 302
D + L + L K+PK + V G ++ + ++ +HG D HA+G
Sbjct: 106 DEDALEKKLAAAKGKLPKAIV--PVD-FAGKSVDMQAIAALAKKHGLKIIEDASHALGAE 162
Query: 303 YGEHGAGIGERDGQLHNMDIIS 324
YG G + + + + S
Sbjct: 163 YGGKPVG----NCRYADATVFS 180
>gnl|CDD|178014 PLN02390, PLN02390, molybdopterin synthase catalytic subunit.
Length = 111
Score = 28.1 bits (63), Expect = 4.1
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 446 TVPVGEEKIRLAPTPFHTREMID--KFVTDLL----AVWK 479
VPVGE + +A + H + +D KF+ D L +WK
Sbjct: 63 PVPVGETSVFVAVSSVHRADALDACKFLIDELKASVPIWK 102
>gnl|CDD|226363 COG3844, COG3844, Kynureninase [Amino acid transport and
metabolism].
Length = 407
Score = 29.4 bits (66), Expect = 5.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 150 LVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
+V V+ TG + ++ + ++HQHGAL D H+ G
Sbjct: 169 VVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAG 208
Score = 29.4 bits (66), Expect = 5.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 262 LVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
+V V+ TG + ++ + ++HQHGAL D H+ G
Sbjct: 169 VVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAG 208
>gnl|CDD|130393 TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase. This model
describes a distinct clade of the Cys/Met metabolism
pyridoxal phosphate-dependent enzyme superfamily.
Members include examples of OAH/OAS sulfhydrylase, an
enzyme with activity both as O-acetylhomoserine (OAH)
sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS)
sulphydrylase (EC 2.5.1.47). An alternate name for OAH
sulfhydrylase is homocysteine synthase. This model is
designated subfamily because it may or may not have both
activities [Amino acid biosynthesis, Aspartate family,
Amino acid biosynthesis, Serine family].
Length = 418
Score = 29.3 bits (66), Expect = 6.2
Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 19/91 (20%)
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG---EHGAGIGERDGQL 317
K V ET+ + + ++ + EV+H HG VD A +HGA
Sbjct: 144 KAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYLCRPIDHGA--------- 194
Query: 318 HNMDIISGTLGKAFG----NIGGYIVGTKNF 344
DI+ + K G IGG IV F
Sbjct: 195 ---DIVVHSATKYIGGHGTAIGGVIVDGGKF 222
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and
modification].
Length = 2365
Score = 29.2 bits (65), Expect = 6.6
Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 19/135 (14%)
Query: 55 ISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASM 114
I G+ L H + L + + + A + TL IP H + M
Sbjct: 44 IVGDILGH--SGNPIYSLRVSDKPVKLGN--KAKTLHVLTLKAPIPPEHLRKIQSPCSDM 99
Query: 115 IQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSH 174
P ++ + + ++L L+ + + KL+ +M + E+ + H
Sbjct: 100 ---------PSVLTKVDKRSYLGA-LKYLPHAVLKLLE-----NMPSPWEDVSEVKVLYH 144
Query: 175 QHGALTFVDEVHAVG 189
HGA+TFV+EV V
Sbjct: 145 CHGAITFVNEVPRVI 159
Score = 29.2 bits (65), Expect = 6.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 279 KELCEVSHQHGALTFVDEVHAVG 301
E+ + H HGA+TFV+EV V
Sbjct: 137 SEVKVLYHCHGAITFVNEVPRVI 159
>gnl|CDD|169194 PRK08045, PRK08045, cystathionine gamma-synthase; Provisional.
Length = 386
Score = 29.1 bits (65), Expect = 6.6
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 137 TQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD 183
Q L + PKLV E+ + + + ++C ++ + GA++ VD
Sbjct: 127 EQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVD 173
Score = 29.1 bits (65), Expect = 6.6
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 249 TQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD 295
Q L + PKLV E+ + + + ++C ++ + GA++ VD
Sbjct: 127 EQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVD 173
>gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase;
Provisional.
Length = 428
Score = 28.8 bits (65), Expect = 6.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 166 LKELCEVSHQHGALTFVDEV 185
L+ + E++H+ GAL DEV
Sbjct: 223 LEAVNELAHEAGALVIYDEV 242
Score = 28.8 bits (65), Expect = 6.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 278 LKELCEVSHQHGALTFVDEV 297
L+ + E++H+ GAL DEV
Sbjct: 223 LEAVNELAHEAGALVIYDEV 242
>gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated.
Length = 373
Score = 28.8 bits (65), Expect = 7.2
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 261 KLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHG-AGIGERDGQ 316
KL+ ++ TGA+ L+E+ E++ A DEV+ L + I +
Sbjct: 155 KLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVY-RPLDEDGSTPSIAD---- 209
Query: 317 LHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSY 351
L+ I + ++ K + G G+I + ID +R Y
Sbjct: 210 LYEKGISTNSMSKTYSLPGIRVGWIAANEEVIDILRKY 247
>gnl|CDD|215815 pfam00244, 14-3-3, 14-3-3 protein.
Length = 236
Score = 28.7 bits (65), Expect = 7.4
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 370 REAIRILSSQEGVELRAKHQDIVAYLRN-------ELIQI 402
R + RI+SS E E ++ V ++ ELI I
Sbjct: 54 RASWRIISSIEQKEESKGNEKKVKLIKEYRKKVEEELINI 93
>gnl|CDD|215134 PLN02242, PLN02242, methionine gamma-lyase.
Length = 418
Score = 28.6 bits (64), Expect = 8.3
Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 29/112 (25%)
Query: 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDE------- 184
D+ L V + + K++ FE++ + T + + EL ++H+ G VD
Sbjct: 148 DITDLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPMVL 207
Query: 185 ----------VHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASM 226
VH++ + GA DII+G + P +++ M
Sbjct: 208 SPARLGADVVVHSISKFISGGA------------DIIAGAVCGPAELVNSMM 247
>gnl|CDD|130873 TIGR01814, kynureninase, kynureninase. This model describes
kynureninase, a pyridoxal-phosphate enzyme. Kynurinine
is a Trp breakdown product and a precursor for NAD. In
Chlamydia psittaci, an obligate intracellular pathogen,
kynureninase makes anthranilate, a Trp precursor, from
kynurenine. This counters the tryptophan hydrolysis that
occurs in the host cell in response to the pathogen
[Energy metabolism, Amino acids and amines].
Length = 406
Score = 28.5 bits (64), Expect = 8.4
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 150 LVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
++ V TG + + + +H GAL D HAVG
Sbjct: 174 VILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVG 213
Score = 28.5 bits (64), Expect = 8.4
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 262 LVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
++ V TG + + + +H GAL D HAVG
Sbjct: 174 VILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVG 213
>gnl|CDD|181567 PRK08861, PRK08861, cystathionine gamma-synthase; Provisional.
Length = 388
Score = 28.7 bits (64), Expect = 8.9
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 137 TQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD 183
L+ K PKL+ ET + + + ELC+ + GAL VD
Sbjct: 128 AAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVD 174
Score = 28.7 bits (64), Expect = 8.9
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 249 TQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD 295
L+ K PKL+ ET + + + ELC+ + GAL VD
Sbjct: 128 AAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVD 174
>gnl|CDD|240100 cd04752, Commd4, COMM_Domain containing protein 4. The COMM Domain
is found at the C-terminus of a variety of proteins;
presumably all COMM_Domain containing proteins are
located in the nucleus and the COMM domain plays a role
in protein-protein interactions. Several family members
have been shown to bind and inhibit NF-kappaB.
Length = 174
Score = 27.8 bits (62), Expect = 9.4
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Query: 375 ILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPS 411
ILSS AK+ L +EL Q+G P EH S
Sbjct: 51 ILSSA------AKYNVDGESLSSELQQLGLPKEHATS 81
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.409
Gapped
Lambda K H
0.267 0.0615 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,399,272
Number of extensions: 2629823
Number of successful extensions: 2632
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2539
Number of HSP's successfully gapped: 174
Length of query: 514
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 413
Effective length of database: 6,457,848
Effective search space: 2667091224
Effective search space used: 2667091224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.5 bits)