RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16848
(514 letters)
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme
biosynthesis, pyridoxal PHOS dependent, transferase,
acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus}
SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Length = 401
Score = 409 bits (1054), Expect = e-140
Identities = 127/270 (47%), Positives = 177/270 (65%), Gaps = 6/270 (2%)
Query: 218 PEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 271
P + I HASMI+GI+ ++ PK I+RHNDV HL +++ D PKL+AFE+V+SM
Sbjct: 131 PGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSM 190
Query: 272 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF 331
G P+KE+C+++ + GALT++DEVHAVG+YG GAG+ ERDG +H +DI +GTL KA+
Sbjct: 191 DGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAY 250
Query: 332 GNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDI 391
G GGYI + +D +RSYA GFIF+TSLPP + AGA+ +I L + EG +LR Q
Sbjct: 251 GVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMH 310
Query: 392 VAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGE 451
L+ L +G P+ SHI+P+ IG+P + DMLL + G YVQPIN+PTVP G
Sbjct: 311 AKVLKMRLKALGMPIIDHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGT 370
Query: 452 EKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481
E++R P+P H + ID V + +W
Sbjct: 371 ERLRFTPSPVHDLKQIDGLVHAMDLLWARC 400
Score = 288 bits (740), Expect = 3e-93
Identities = 105/205 (51%), Positives = 144/205 (70%), Gaps = 6/205 (2%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
EALE G G+GGTRNISG + +H +LE ++A LHQKEA LVF+S Y AND+TL TL +
Sbjct: 71 EALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLF 130
Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159
PGL SD+ NHASMI+GI+ ++ PK I+RHNDV HL +++ D PKL+AFE+V+SM
Sbjct: 131 PGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSM 190
Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL---- 215
G P+KE+C+++ + GALT++DEVHAVG+YG GAG+ ERDG +H +DI +GTL
Sbjct: 191 DGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAY 250
Query: 216 --VNPEVAIHASMIQGIRNSSAPKI 238
+A A M+ +R+ + I
Sbjct: 251 GVFGGYIAASARMVDAVRSYAPGFI 275
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence,
acyltransferase, aminotransferase, pyridoxal PHO
transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB:
3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Length = 409
Score = 349 bits (899), Expect = e-117
Identities = 66/285 (23%), Positives = 118/285 (41%), Gaps = 14/285 (4%)
Query: 207 NMDIISGTLVNPEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP 260
N+ ++ T+ P + H S+ +G R ++A + HN+ +HL +++ P
Sbjct: 132 NVGLLQ-TICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRMLIQRHG---P 187
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM 320
++ ++++S G I PL EL +S + G VDE H++G +G +GAG+ G +
Sbjct: 188 GIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREV 247
Query: 321 DIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQE 380
++ +L K F G I + + IF+++L P AG + I+ +
Sbjct: 248 HFMTASLAKTFAYRAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEII--ES 305
Query: 381 GVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQ 440
R + LR L Q+G + + S II ++ G+ K+ D L G +
Sbjct: 306 ADNRRQHLDRMARKLRIGLSQLGLTI-RSESQIIGLETGDERNTEKVRDYLE-SNGVFGS 363
Query: 441 PINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPL 485
P + IRL+ E I K + D
Sbjct: 364 VFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNYGDFYF 408
Score = 238 bits (610), Expect = 7e-74
Identities = 43/176 (24%), Positives = 84/176 (47%), Gaps = 5/176 (2%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
++L + + + N +E+ +AK + L+ S + AN L T+ +
Sbjct: 84 KSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQ-- 141
Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159
P + D H S+ +G R ++A + HN+ +HL +++ P ++ ++++S
Sbjct: 142 PNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRMLIQRHG---PGIIVVDSIYST 198
Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215
G I PL EL +S + G VDE H++G +G +GAG+ G + ++ +L
Sbjct: 199 LGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASL 254
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas
paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A*
2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Length = 427
Score = 328 bits (843), Expect = e-108
Identities = 87/285 (30%), Positives = 135/285 (47%), Gaps = 12/285 (4%)
Query: 207 NMDIISGTLVNPEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP 260
N+ IIS TL + HAS+ G + +A + +RHN V L + L + +
Sbjct: 137 NLGIIS-TLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGRLPKEPA 195
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM 320
KLV E V+SM G I PLKE+ V+ +HGA+ VDE H++G +G +G G+ E G +
Sbjct: 196 KLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQI 255
Query: 321 DIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQE 380
D + GT K+ G +GG++V + +R +IFT SLPP+V+A A +IR L
Sbjct: 256 DFVVGTFSKSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKL--MT 313
Query: 381 GVELRAKHQDIVAYLRNELIQIGFPVEHTP--SHIIPIKIGNPALNTKICDMLLKEKGHY 438
E R + L L +GF + S I+ + + + + LL + G Y
Sbjct: 314 AHEKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQEQAAMMWQALL-DGGLY 372
Query: 439 VQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL 483
V P P G +R + HT I + A +++ +
Sbjct: 373 VNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAVGV 417
Score = 227 bits (582), Expect = 1e-69
Identities = 65/176 (36%), Positives = 101/176 (57%), Gaps = 2/176 (1%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
EALEKFG+G G+R ++G H ++E+ + + +VF++ Y+AN + TL
Sbjct: 89 EALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAG-- 146
Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159
G + I DA +HAS+ G + +A + +RHN V L + L + + KLV E V+SM
Sbjct: 147 KGEYVILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSM 206
Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215
G I PLKE+ V+ +HGA+ VDE H++G +G +G G+ E G +D + GT
Sbjct: 207 LGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTF 262
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism,
transferase; HET: PLP; 2.30A {Coxiella burnetii}
Length = 399
Score = 310 bits (796), Expect = e-101
Identities = 100/286 (34%), Positives = 161/286 (56%), Gaps = 12/286 (4%)
Query: 207 NMDIISGTLVNPEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP 260
N + TL+ PE AI HAS+I GIR A + Y++N + L L+ D K
Sbjct: 116 NGGLFE-TLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKNNAMGDLEAKLKEADEKGA 174
Query: 261 --KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLH 318
KL+A + V SM G I LK +C+++ ++ AL VD+ HAVG GE+G G E G
Sbjct: 175 RFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVAD 234
Query: 319 NMDIISGTLGKAF-GNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS 377
+DI++GTLGKA G GGY G K I+ +R+ + ++F+ ++ P ++A + + + +L
Sbjct: 235 RVDILTGTLGKALGGASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLK 294
Query: 378 SQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGH 437
+ EG +LR + Q+ Y R + ++GF + IIP+ +G+ L T + D LL ++G
Sbjct: 295 T-EGPQLRKQLQENSRYFRAGMEKLGFQLVPGNHPIIPVMLGDAQLATNMADHLL-QEGI 352
Query: 438 YVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL 483
YV +YP VP+G+ +IR+ + HT++ +D+ + V K L
Sbjct: 353 YVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKLGA 398
Score = 210 bits (538), Expect = 2e-63
Identities = 65/178 (36%), Positives = 100/178 (56%), Gaps = 4/178 (2%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
+E++G G R I G H++LE+D+++ + ++++SC+ AN TL +
Sbjct: 68 TVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGTDDTILYSSCFDANGGLFETL--LG 125
Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP--KLVAFETVH 157
P ISD NHAS+I GIR A + Y++N + L L+ D K KL+A + V
Sbjct: 126 PEDAIISDELNHASIIDGIRLCKAQRYRYKNNAMGDLEAKLKEADEKGARFKLIATDGVF 185
Query: 158 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215
SM G I LK +C+++ ++ AL VD+ HAVG GE+G G E G +DI++GTL
Sbjct: 186 SMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTL 243
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA
synthase, biotin biosynthesis, 8-AMIN oxonanoate
synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB:
2g6w_A* 1dje_A* 1dj9_A*
Length = 384
Score = 284 bits (728), Expect = 1e-91
Identities = 76/277 (27%), Positives = 131/277 (47%), Gaps = 11/277 (3%)
Query: 207 NMDIISGTLVNPEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP 260
N +I+ ++ E I HAS+++ S + + HNDV HL ++L +
Sbjct: 112 NQAVIA-AMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCPG-Q 169
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM 320
++V E V SM G PL E+ +V+ QH VD+ H G+ GE G G
Sbjct: 170 QMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQK--VKP 227
Query: 321 DIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQE 380
+++ T GK FG G ++ + D + +A I++TS+PP R ++ ++ S E
Sbjct: 228 ELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDE 287
Query: 381 GVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQ 440
G R K ++ R + + F + + S I P+ +G+ + ++ + L ++G +V
Sbjct: 288 GDARREKLAALITRFRAGVQDLPFTLADSCSAIQPLIVGDNSRALQLAEKLR-QQGCWVT 346
Query: 441 PINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV 477
I PTVP G ++RL T H + ID+ + L
Sbjct: 347 AIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383
Score = 193 bits (493), Expect = 7e-57
Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 5/176 (2%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
+ E+FG G+GG+ ++SG S+ H+ LEE++A+ L+F S + AN + + + M
Sbjct: 64 QGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAM--MA 121
Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159
+D +HAS+++ S + + HNDV HL ++L + ++V E V SM
Sbjct: 122 KEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCPG-QQMVVTEGVFSM 180
Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215
G PL E+ +V+ QH VD+ H G+ GE G G +++ T
Sbjct: 181 DGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQK--VKPELLVVTF 234
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type
I, acyltransferase, PY phosphate; HET: PLP; 2.30A
{Sphingobacterium multivorum}
Length = 398
Score = 279 bits (715), Expect = 1e-89
Identities = 83/284 (29%), Positives = 139/284 (48%), Gaps = 10/284 (3%)
Query: 207 NMDIISGTLVNPEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP 260
N+ +S L+ I HAS+I G R S + I Y HN++ L L +
Sbjct: 116 NLGPLS-CLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGHNNMEDLRAKLSRLPEDSA 174
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM 320
KL+ + + SM G I L EL ++++ A VD+ H++G+ G GAG G ++
Sbjct: 175 KLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDV 234
Query: 321 DIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQE 380
D+I GT K+ ++GG++ G + ID ++ A +F+ S+ P +A +A+ I+ Q
Sbjct: 235 DLIMGTFSKSLASLGGFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEII--QN 292
Query: 381 GVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQ 440
E K Y + +L+ GF + T S I+PI I + + ML + G +V
Sbjct: 293 EPEHIEKLWKNTDYAKAQLLDHGFDLGATESPILPIFIRSNEKTFWVTKMLQ-DDGVFVN 351
Query: 441 PINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLP 484
P+ P VP E IR + HT + ID+ + ++ V+K ++
Sbjct: 352 PVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQAEVE 395
Score = 188 bits (481), Expect = 4e-55
Identities = 59/176 (33%), Positives = 95/176 (53%), Gaps = 2/176 (1%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
+ALEK+GTG G+R ++G H +LEE ++ KEA ++F++ + +N L L M
Sbjct: 68 DALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPLSCL--MG 125
Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159
+ + D +HAS+I G R S + I Y HN++ L L + KL+ + + SM
Sbjct: 126 RNDYILLDERDHASIIDGSRLSFSKVIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSM 185
Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215
G I L EL ++++ A VD+ H++G+ G GAG G ++D+I GT
Sbjct: 186 EGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTF 241
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate
COA ligase, pyridoxal phosphate, COEN transferase,
structural genomics; HET: PLP; 2.00A {Escherichia coli}
SCOP: c.67.1.4
Length = 401
Score = 272 bits (697), Expect = 7e-87
Identities = 91/286 (31%), Positives = 143/286 (50%), Gaps = 13/286 (4%)
Query: 207 NMDIISGTLVNPEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP 260
N + TL+ E AI HAS+I G+R A + Y +ND+ L L+
Sbjct: 118 NGGLFE-TLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEAREAGA 176
Query: 261 --KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLH 318
L+A + V SM G I LK +C+++ ++ AL VD+ HAVG GE+G G E +
Sbjct: 177 RHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMG 236
Query: 319 NMDIISGTLGKAF-GNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS 377
+DII+GTLGKA G GGY K ++ +R + ++F+ SL P ++A + + + ++
Sbjct: 237 RVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMV- 295
Query: 378 SQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGH 437
+ G ELR + R ++ GF + IIP+ +G+ + K L ++G
Sbjct: 296 -EAGSELRDRLWANARQFREQMSAAGFTLAGADHAIIPVMLGDAVVAQKFARELQ-KEGI 353
Query: 438 YVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL 483
YV YP VP G+ +IR + HT E I + V + K L +
Sbjct: 354 YVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLGV 399
Score = 185 bits (472), Expect = 9e-54
Identities = 62/178 (34%), Positives = 93/178 (52%), Gaps = 4/178 (2%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
++ G G R I G H++LE+ +A E ++++SC+ AN TL +
Sbjct: 70 AGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETL--LG 127
Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP--KLVAFETVH 157
ISDA NHAS+I G+R A + Y +ND+ L L+ L+A + V
Sbjct: 128 AEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVF 187
Query: 158 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215
SM G I LK +C+++ ++ AL VD+ HAVG GE+G G E + +DII+GTL
Sbjct: 188 SMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTL 245
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 75.1 bits (184), Expect = 3e-14
Identities = 74/448 (16%), Positives = 136/448 (30%), Gaps = 162/448 (36%)
Query: 131 NDVNHLTQVLENMDVKIPKLVAFET-------VHSMTGAICPLKELCEVSHQHGALTFVD 183
+ V QVL L FE +H++ + + V + ++
Sbjct: 75 SKVGQFDQVLNLC------LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT 128
Query: 184 EVHAVG---------------------LY---GEHGAGIGE------RDGQLHNMDIISG 213
L G G G + RD L+
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG--GQGNTDDYFEELRD--LYQ---TYH 181
Query: 214 TLVNPEVAIHASMIQG-IRNSSAPKIIYRHN-DVNHLTQVLENMDVKIPKLVAFETVHSM 271
LV + A + IR + + ++ ++ + LEN P ++
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI---LEWLENPS-NTPDKDYLLSI--- 234
Query: 272 TGAI-CPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKA 330
I CPL + +++H +V +G G+L + G G +
Sbjct: 235 --PISCPLIGVIQLAH------YVVTAKLLGF----------TPGEL--RSYLKGATGHS 274
Query: 331 FGNIGGYIVGT----KNFIDTIRSYAAGFIF-----------TTSLPPTVLAGARE---- 371
G + + ++F ++R A +F TSLPP++L + E
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRK-AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 372 ------AIRILSS---QEGVELRAKH----QDIVAYLRNELIQIGFPVEHTPSHIIPIKI 418
+I L+ Q+ V H + + L N +++ +
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN-----------GAKNLV---V 379
Query: 419 -GNP----ALNTKICDMLLKEKGHYVQPINYPT------VPVGEEKIRLA----P--TPF 461
G P LN L K K P+ +P E K++ + P +PF
Sbjct: 380 SGPPQSLYGLNLT----LRKAKA--------PSGLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 462 HTREM---IDKFVTDLLAV---WKSLDL 483
H+ + D DL+ + + D+
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDI 455
Score = 45.0 bits (106), Expect = 5e-05
Identities = 44/277 (15%), Positives = 76/277 (27%), Gaps = 95/277 (34%)
Query: 68 DVAKLHQKEAGLVFTSCY-------VANDSTLFTL------GKMI----PGLHY--ISDA 108
A+ A F Y V N+ T+ GK I + + I D
Sbjct: 1640 KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDG 1699
Query: 109 GNHASMIQGIRNSSAPKIIYRH-NDVNHLTQ---------------VLENMDVKIPKLVA 152
I N + +R + TQ L++ + IP
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGL-IPADAT 1758
Query: 153 F--ETVHSMTGAICPLKE---LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLH- 206
F HS L E L ++ ++ V V G RD
Sbjct: 1759 FAG---HS-------LGEYAALASLA---DVMSIESLVEVVFYRGMTMQVAVPRDELGRS 1805
Query: 207 NMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR-------------HN---------- 243
N +I+ +NP + + ++ R +N
Sbjct: 1806 NYGMIA---INP-----GRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAG 1857
Query: 244 ---DVNHLTQVLENMDVK---IPKL---VAFETVHSM 271
++ +T VL + ++ I +L ++ E V
Sbjct: 1858 DLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 43.9 bits (103), Expect = 1e-04
Identities = 31/183 (16%), Positives = 51/183 (27%), Gaps = 56/183 (30%)
Query: 304 GEHGAGIGERDGQL--HNMDIISGTLGKAFGNIG----GYI-VGTKNFID-TIRSYA--A 353
GE G I E + + K F I Y K + T + A
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT--QFTQPA 1735
Query: 354 GFIFTTSL-------------PPTVLAG-------AREAI-RILSSQEGVELRAKHQDIV 392
+ AG A ++ ++S + VE+ V
Sbjct: 1736 --LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV-------V 1786
Query: 393 AYLRNELIQIGFPVEHT-----------PSHIIPIKIGNPALNTKICDMLLKEKGHYVQP 441
Y R +Q+ P + P + AL + + + K G V+
Sbjct: 1787 FY-RGMTMQVAVPRDELGRSNYGMIAINPGRVA-ASFSQEALQ-YVVERVGKRTGWLVEI 1843
Query: 442 INY 444
+NY
Sbjct: 1844 VNY 1846
Score = 40.0 bits (93), Expect = 0.002
Identities = 46/304 (15%), Positives = 85/304 (27%), Gaps = 111/304 (36%)
Query: 186 HAVG----LYGEHGA--GIGER-DGQLHN------MDIISGTLVNP-EVAIHASMIQG-- 229
G LY A + R D + +DI+ NP + IH +G
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVIN---NPVNLTIHFGGEKGKR 1683
Query: 230 IR-------------------------NSSAPKIIYRH-NDVNHLTQ------------- 250
IR N + +R + TQ
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA 1743
Query: 251 --VLENMDVKIPKLVAF--ETVHSMTGAICPLKE---LCEVSHQHGALTFVDEVHAV--- 300
L++ + IP F HS L E L ++ ++ V V
Sbjct: 1744 FEDLKSKGL-IPADATFAG---HS-------LGEYAALASLA---DVMSIESLVEVVFYR 1789
Query: 301 GLYGEHGAGIGERDGQLHNM-DIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFI--- 356
G+ + E + M I G + +F + ++ + +
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA-----LQYVVERVGKRTGWLVEIV 1844
Query: 357 -FTTSLPP--TVLAGAREAI----RILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHT 409
+ ++ V AG A+ +L+ ++ + DI+ +Q +E
Sbjct: 1845 NY--NVENQQYVAAGDLRALDTVTNVLN-----FIKLQKIDIIE------LQKSLSLEEV 1891
Query: 410 PSHI 413
H+
Sbjct: 1892 EGHL 1895
Score = 38.1 bits (88), Expect = 0.007
Identities = 22/138 (15%), Positives = 45/138 (32%), Gaps = 45/138 (32%)
Query: 35 R-KCLGEALEKFGTGAGGTRNISGN------SLFHEKLEEDVAKLHQKEAGLVFTSCYVA 87
R + A+ + G I+ N S E L+ V ++ K G + +
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV-GKRTGWL---VEIV 1844
Query: 88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVK- 146
N + + Y++ AG+ ++ +T VL + ++
Sbjct: 1845 NYN--------VENQQYVA-AGDLR-------------------ALDTVTNVLNFIKLQK 1876
Query: 147 --IPKL---VAFETVHSM 159
I +L ++ E V
Sbjct: 1877 IDIIELQKSLSLEEVEGH 1894
Score = 31.2 bits (70), Expect = 0.96
Identities = 37/202 (18%), Positives = 65/202 (32%), Gaps = 76/202 (37%)
Query: 27 QYKVPKGGRKCLGEALEKFGTGAGGTR--NISGNSLFHEKLEEDVAKLHQKEAGLVFTSC 84
Q ++P RK KF R ++ S FH L + L K+
Sbjct: 404 QSRIPFSERK------LKF-----SNRFLPVA--SPFHSHLLVPASDLINKD-------- 442
Query: 85 YVANDSTLFTLGKM-IPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENM 143
+ ++ F + IP ++ D + ++ + S + +I+ + +
Sbjct: 443 -LVKNNVSFNAKDIQIP-VYDTFDGSD----LRVLSGSISERIV----------DCIIRL 486
Query: 144 DVKIPKLVAFETVHSMT---GAICPLKELCEVSHQHGALT--FVDEVHAVGLYGEHGAGI 198
VK F+ H + G L G LT D G G+
Sbjct: 487 PVKWETTTQFKATHILDFGPGGASGL----------GVLTHRNKD-----------GTGV 525
Query: 199 GERDGQLHNMDIISGTL-VNPE 219
I++GTL +NP+
Sbjct: 526 RV---------IVAGTLDINPD 538
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 56.3 bits (136), Expect = 1e-08
Identities = 30/241 (12%), Positives = 67/241 (27%), Gaps = 43/241 (17%)
Query: 253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGE 312
E L G + +K++ +V ++ V+ + G
Sbjct: 141 ETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGA--------YAIGRMP 192
Query: 313 RDGQLHNMDIISGTLGKAFGNIG--GYIVGTKNFIDTIRSYAAGF---------IFTTSL 361
+ D I G+ K+ G G + + + + + + +
Sbjct: 193 VSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGA 252
Query: 362 PPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGF------PVEHTPSHI-- 413
L + +R E ++ + + E+ ++G P H
Sbjct: 253 TIITLMASFPHVR-----ERIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHA 307
Query: 414 -IPIKIGNPALNTKICDM--LLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKF 470
+ +I A + L K H ++P G + T + E +D
Sbjct: 308 EVLYEISKKAKGGRFFLYRELKSRKIHGIKP--------GLTRYFKLSTYGLSDEEVDYV 359
Query: 471 V 471
+
Sbjct: 360 L 360
Score = 47.4 bits (113), Expect = 6e-06
Identities = 8/49 (16%), Positives = 18/49 (36%)
Query: 141 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
E L G + +K++ +V ++ V+ +A+G
Sbjct: 141 ETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIG 189
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent
aminotransferase fold; HET: PLP; 2.20A {Salmonella
typhimurium} SCOP: c.67.1.3
Length = 366
Score = 55.7 bits (135), Expect = 1e-08
Identities = 38/195 (19%), Positives = 74/195 (37%), Gaps = 36/195 (18%)
Query: 244 DVNHLTQVLENMDVKIPKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
DV + +L D I +A VHS TG + P+ E+ ++H++G VD + + G
Sbjct: 118 DVQAIDAILNA-DPTI-SHIAM--VHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFG 173
Query: 302 LYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGG--YIVGTKNFIDTIRSYAAGFIFTT 359
GI L ++D + + K + G +++ + + + ++
Sbjct: 174 -------GIPMDIAAL-HIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDL 225
Query: 360 SL---------------PPT-VLAGAREAIRILSSQEGVELR-AKHQDIVAYLRNELIQI 402
PT + +A++ L+ + GV R ++Q L + +
Sbjct: 226 YAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL 285
Query: 403 GFPV---EHTPSHII 414
GF + S II
Sbjct: 286 GFNTLLDDELHSPII 300
Score = 41.4 bits (98), Expect = 4e-04
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 132 DVNHLTQVLENMDVKIPKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
DV + +L D I +A VHS TG + P+ E+ ++H++G VD + + G
Sbjct: 118 DVQAIDAILNA-DPTI-SHIAM--VHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFG 173
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6,
pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A
{Pseudomonas fluorescens} SCOP: c.67.1.3
Length = 416
Score = 55.1 bits (133), Expect = 3e-08
Identities = 44/275 (16%), Positives = 78/275 (28%), Gaps = 60/275 (21%)
Query: 240 YRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHA 299
Y V+ ++ + +D +V V+ TG + ++ L +SH+ GAL D H+
Sbjct: 147 YTLRLVDSPEELPQAIDQDT-AVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHS 205
Query: 300 VGLYGEHGAGIGERDGQLHNMDIISGTLGKAF----GNIGGYIVGTKNFIDTIRSYAAGF 355
G D D G K G+ V + D + +G+
Sbjct: 206 AGAV--------PVDLHQAGADYAIGCTYKYLNGGPGSQAFVWV-SPQLCDLVPQPLSGW 256
Query: 356 I--------------------FTTSLPPTV-LAGAREAIRILSSQEGVELRAKHQDIVAY 394
+ P LA + + + + LR K +
Sbjct: 257 FGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDL 316
Query: 395 LRNELIQIGFPVE---HTP------SHIIPIKIGNPALNTKICDMLLKEK--GHYVQPIN 443
+ Q E TP + + + L+ G Y +P
Sbjct: 317 FIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPEGY---AVIQALIDRGVIGDYREP-- 371
Query: 444 YPTVPVGEEKIRLAPTPFHTREM-IDKFVTDLLAV 477
+R TP +T + V L +
Sbjct: 372 --------RIMRFGFTPLYTTFTEVWDAVQILGEI 398
Score = 44.7 bits (106), Expect = 5e-05
Identities = 18/88 (20%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 105 ISDAGNHAS---MIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG 161
+++ N + + +G+ + + Y V+ ++ + +D +V V+ TG
Sbjct: 123 VTETSNFPTDLYIAEGL--ADMLQQGYTLRLVDSPEELPQAIDQDT-AVVMLTHVNYKTG 179
Query: 162 AICPLKELCEVSHQHGALTFVDEVHAVG 189
+ ++ L +SH+ GAL D H+ G
Sbjct: 180 YMHDMQALTALSHECGALAIWDLAHSAG 207
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase,
pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy
hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A
{Homo sapiens} PDB: 2hzp_A*
Length = 465
Score = 48.1 bits (114), Expect = 4e-06
Identities = 51/280 (18%), Positives = 83/280 (29%), Gaps = 52/280 (18%)
Query: 236 PKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD 295
P+ + + +V+E ++ F VH TG + + + G D
Sbjct: 192 PREGEETLRIEDILEVIEKEG-DSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFD 250
Query: 296 EVHAVGLYGE--HGAGIGERDGQLHNMDIISGTLGKAFGNI---------------GGYI 338
HAVG H G+ + + +G G A I G+
Sbjct: 251 LAHAVGNVELYLHDWGVDFACWCSYKY-LNAGAGGIAGAFIHEKHAHTIKPALVGWFGHE 309
Query: 339 VGTKNFIDTIRSYAAGFI-FTTSLPPTV-LAGAREAIRILSSQEGVELRAKHQDIVAYLR 396
+ T+ +D G F S PP + + ++ I LR K + YL
Sbjct: 310 LSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLE 369
Query: 397 NELIQIGFPVEH----------TPSH------IIPIKIGNPALNTKICDMLLKEK--GHY 438
+ + TPSH + I P + L K
Sbjct: 370 YLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSVPNK--DVFQELEKRGVVCDK 427
Query: 439 VQPINYPTVPVGEEKIRLAPTPFHTREM-IDKFVTDLLAV 477
P IR+AP P + + KF L ++
Sbjct: 428 RNP----------NGIRVAPVPLYNSFHDVYKFTNLLTSI 457
Score = 40.4 bits (94), Expect = 0.001
Identities = 26/182 (14%), Positives = 50/182 (27%), Gaps = 28/182 (15%)
Query: 31 PKGGRKCLGEALEKFGTGA--GGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAN 88
PK + L E L+K+ A G E + + + +
Sbjct: 80 PKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEI-----ALM 134
Query: 89 DSTLFTLGKMIPGLHY--------ISDAGNHASMI---------QGIRNSSAPKIIYRHN 131
++ L ++ + +A S G+ + ++I
Sbjct: 135 NALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPRE 194
Query: 132 DVNHLTQV----LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHA 187
L + + ++ F VH TG + + + G D HA
Sbjct: 195 GEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHA 254
Query: 188 VG 189
VG
Sbjct: 255 VG 256
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national
PROJ protein structural and functional analyses; HET:
PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Length = 353
Score = 47.2 bits (113), Expect = 6e-06
Identities = 35/181 (19%), Positives = 63/181 (34%), Gaps = 32/181 (17%)
Query: 244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY 303
D + + L+ ++ LV ET S TG + P + + ++ + GAL F+D V +G
Sbjct: 112 DPEAVARALKRRRYRMVALVHGET--S-TGVLNPAEAIGALAKEAGALFFLDAVTTLG-- 166
Query: 304 GEHGAGIGERDGQLHNMDIISGTLGKAFGNIGG------------YIVGTK----NFIDT 347
+D K G G + +
Sbjct: 167 ---MLPF-SMRAM--GVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYLDLARV 220
Query: 348 IRSYAAGFIFTTSLPPT-VLAGAREAIRILSSQEGVELR-AKHQDIVAYLRNELIQIGFP 405
+ G T P + EA+ ++ +EGV R + +++ A++ EL GF
Sbjct: 221 AEHWERGGYHHT--TPVLLHYALLEALDLV-LEEGVAARERRAREVYAWVLEELKARGFR 277
Query: 406 V 406
Sbjct: 278 P 278
Score = 42.2 bits (100), Expect = 3e-04
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
D + + L+ ++ LV ET S TG + P + + ++ + GAL F+D V +G
Sbjct: 112 DPEAVARALKRRRYRMVALVHGET--S-TGVLNPAEAIGALAKEAGALFFLDAVTTLG 166
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A
{Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Length = 384
Score = 47.2 bits (113), Expect = 8e-06
Identities = 37/192 (19%), Positives = 72/192 (37%), Gaps = 46/192 (23%)
Query: 244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY 303
+ + + + K+ L ET S TG P+K++ ++ L VD V +VG
Sbjct: 115 KPGEVEEEVRKSEYKLVALTHVET--S-TGVREPVKDVINKIRKYVELIVVDGVSSVG-- 169
Query: 304 GEHGAGIGERDGQLHNMD------IISGT---LG------------------KAFGNIGG 336
+ + ++ + LG + +I G
Sbjct: 170 -----------AEEVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAG 218
Query: 337 YIVGTKNFIDTIRSYAAGFIFTTSLPPT-VLAGAREAIRILSSQEGVELR-AKHQDIVAY 394
Y + +N++ +R G + PP V+ EA R++ +EG+E R +H + +
Sbjct: 219 YYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLI-EKEGIENRIKRHTMVASA 277
Query: 395 LRNELIQIGFPV 406
+R L +G +
Sbjct: 278 IRAGLEALGLEI 289
Score = 41.4 bits (98), Expect = 5e-04
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
+ + + + K+ L ET S TG P+K++ ++ L VD V +VG
Sbjct: 115 KPGEVEEEVRKSEYKLVALTHVET--S-TGVREPVKDVINKIRKYVELIVVDGVSSVG 169
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for
structural genomics, JCSG; HET: MSE LLP; 1.70A
{Eubacterium rectale}
Length = 376
Score = 44.5 bits (106), Expect = 5e-05
Identities = 26/201 (12%), Positives = 57/201 (28%), Gaps = 53/201 (26%)
Query: 244 DVNHLTQVLENMDVKIPKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
L + + + T + + E ++ D V A
Sbjct: 133 TKEKLYEYDN----QNFTGLLV--NVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFL 186
Query: 302 LYGEHGAGIGERDGQLHNMD------IISGTLGKAFGN---IGGYIVGTK---------- 342
NM+ +I+G+ K I ++ +
Sbjct: 187 -------------ADPFNMNECGADVMITGS-QKVLACPPGISVIVLAPRGVERVEKSKV 232
Query: 343 -----NFIDTIRSYAAG-FIFTTSLPPT-VLAGAREAIRILSSQEGVELR-AKHQDIVAY 394
+ D +++ G FT P +L E ++ + G + A+ A
Sbjct: 233 RTMYFDLKDALKNQERGQTPFT---PAVGILLQINERLKEIKKHGGADAEVARIASQAAD 289
Query: 395 LRNELIQIGF-PVEHTPSHII 414
R ++ + F V +P++ +
Sbjct: 290 FRAKIKDLPFELVSESPANGV 310
Score = 37.6 bits (88), Expect = 0.008
Identities = 6/60 (10%), Positives = 13/60 (21%), Gaps = 8/60 (13%)
Query: 132 DVNHLTQVLENMDVKIPKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
L + + + T + + E ++ D V A
Sbjct: 133 TKEKLYEYDN----QNFTGLLV--NVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFL 186
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium
tuberculosis}
Length = 406
Score = 44.1 bits (105), Expect = 6e-05
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 149 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAV 188
+LVA + G + L+ + ++ H GAL VD A
Sbjct: 167 RLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAA 206
Score = 44.1 bits (105), Expect = 6e-05
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAV 300
+LVA + G + L+ + ++ H GAL VD A
Sbjct: 167 RLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAA 206
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 2e-04
Identities = 61/422 (14%), Positives = 125/422 (29%), Gaps = 110/422 (26%)
Query: 6 MCLNFKQVHKSN-----RVTCRLSSVQYKV-----PKGGRKCL--------GEALEKFG- 46
+ S + R+ S+Q ++ K CL +A F
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 47 ------TGAGGTRN------ISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFT 94
T TR +S + H L+ L E +
Sbjct: 265 SCKILLT----TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY---------- 310
Query: 95 LGKMIPGLHYISDAGN--HASMIQGIRNSSAPKII--YRHNDVNHLTQVLEN-MDVKIP- 148
L L N S+I ++H + + LT ++E+ ++V P
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSII-AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 149 -------KLVAF-ETVHSMTGAICPL-----KELCEVSHQHGALTFVDEVHAVGLYGEHG 195
+L F + H T + + K V V+++H L +
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV--------VVNKLHKYSLVEKQP 421
Query: 196 AGIGERDGQLHNMDIISGTLVNPEVAIHASMI---QGIRNSSAPKIIYRHND-------V 245
E + ++ + + E A+H S++ + + +I + D
Sbjct: 422 K---ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 246 NHLTQVLENMDVKIPKLVAFETV----HSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
+HL +E+ + ++ F V + I S G++ + + +
Sbjct: 479 HHLKN-IEHPE----RMTLFRMVFLDFRFLEQKIRHDSTAWNAS---GSIL--NTLQQLK 528
Query: 302 LYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIR---SYAAGFIFT 358
Y + I + D + + + I ++ +K + D +R IF
Sbjct: 529 FYKPY---ICDNDPKYERL---VNAILDFLPKIEENLICSK-YTDLLRIALMAEDEAIFE 581
Query: 359 TS 360
+
Sbjct: 582 EA 583
Score = 38.3 bits (88), Expect = 0.007
Identities = 75/514 (14%), Positives = 149/514 (28%), Gaps = 161/514 (31%)
Query: 119 RNSSAPKIIY--RHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE-LCEVSHQ 175
R S +Y + + + + QV +V + L++ L E+
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL------------KLRQALLELRPA 150
Query: 176 HGALTFVDEVHAVGLYGEHGAG----IGE--RDGQLH-NMD-----IISGTLVNPEVAIH 223
V + G G+G + ++ MD + +PE +
Sbjct: 151 KN----------VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL- 199
Query: 224 ASMIQGI----------RNSSAPKIIYRHNDV-NHLTQVLENM----------DVKIPKL 262
M+Q + R+ + I R + + L ++L++ +V+ K
Sbjct: 200 -EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 263 V-AFE----TV-----HSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGE------- 305
AF + +T + +S H ++T + L +
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATT-THISLDHHSMTLTPD-EVKSLLLKYLDCRPQ 316
Query: 306 ------------HGAGIGE--RDGQLH-------NMDIISGTLGKAFGNIGGYIVGTKNF 344
+ I E RDG N D ++ + + +
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL--------EP 368
Query: 345 IDTIRSYAAGFIF--TTSLPPTVLA---------------------------GAREAIRI 375
+ + + +F + +P +L+ I I
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 376 LSSQEGVELRAKHQDIVAYLRNELI-QIGFPVEHTPSHIIPIKIGNPALNTKICDML--- 431
S +EL+ + L ++ P +IP P L+ +
Sbjct: 429 PSIY--LELK-VKLENEYALHRSIVDHYNIPKTFDSDDLIP-----PYLDQYFYSHIGHH 480
Query: 432 LKEKGHYVQPINYPTVPVG----EEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSG 487
LK H + + V + E+KIR T ++ I + L +K
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ-LKFYKPYICDNDP 539
Query: 488 LTCAQVNILL-FIILF--HLILSQ----VQQALS 514
VN +L F+ +LI S+ ++ AL
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIALM 573
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A
{Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Length = 392
Score = 42.6 bits (101), Expect = 2e-04
Identities = 29/170 (17%), Positives = 49/170 (28%), Gaps = 34/170 (20%)
Query: 260 PKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQL 317
+V+ H +G I P+ + + HGA VD V + G G +
Sbjct: 135 ITVVSV--CHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFG-----GMKT-HPEDC- 185
Query: 318 HNMDIISGTLGKAFGNIGG-----------------YIVGTKNFID--TIRSYAAGFIFT 358
DI K G G + + + + +
Sbjct: 186 -KADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPF 244
Query: 359 TSLPPT-VLAGAREAIRILSSQEGVELR-AKHQDIVAYLRNELIQIGFPV 406
P + G A+ + EG E A+H +R + +G V
Sbjct: 245 PFTPSVSEINGLDVALDLY-LNEGPEAVWARHALTAKAMRAGVTAMGLSV 293
Score = 41.9 bits (99), Expect = 3e-04
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 148 PKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
+V+ H +G I P+ + + HGA VD V + G
Sbjct: 135 ITVVSV--CHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFG 176
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative
aminotransferase, structural genomics, center for
structural genomics, JCSG; HET: PLP; 1.65A {Mus
musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Length = 393
Score = 42.6 bits (101), Expect = 2e-04
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 148 PKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
P L+ VH TG + PL E+ H++ L VD V ++G
Sbjct: 149 PVLLFL--VHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLG 190
Score = 42.6 bits (101), Expect = 2e-04
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 260 PKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
P L+ VH TG + PL E+ H++ L VD V ++G
Sbjct: 149 PVLLFL--VHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLG 190
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway,
transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP:
c.67.1.3 PDB: 2ch2_A*
Length = 396
Score = 42.3 bits (100), Expect = 3e-04
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 136 LTQVLENMDVKIPKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
L + +++ PK + H +G + PL+ + ++ HQH L VD V ++
Sbjct: 132 LETLARAIELHQPKCLFL--THGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLC 185
Score = 42.3 bits (100), Expect = 3e-04
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 248 LTQVLENMDVKIPKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
L + +++ PK + H +G + PL+ + ++ HQH L VD V ++
Sbjct: 132 LETLARAIELHQPKCLFL--THGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLC 185
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein,
PLP-dependent transferase; HET: LLP; 1.75A {Aedes
aegypti} PDB: 2hui_A* 2huu_A*
Length = 393
Score = 42.3 bits (100), Expect = 3e-04
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 148 PKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
P ++ TG + L+ + + HQH L VD V ++G
Sbjct: 145 PSVLFL--TQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLG 186
Score = 42.3 bits (100), Expect = 3e-04
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 260 PKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
P ++ TG + L+ + + HQH L VD V ++G
Sbjct: 145 PSVLFL--TQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLG 186
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent
enzymes, purine metabolism transaminases,
aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Length = 416
Score = 41.9 bits (99), Expect = 3e-04
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 148 PKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
PK+VA VH TG I PLK + E AL VD V +G
Sbjct: 137 PKIVAM--VHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIG 178
Score = 41.9 bits (99), Expect = 3e-04
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 260 PKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
PK+VA VH TG I PLK + E AL VD V +G
Sbjct: 137 PKIVAM--VHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIG 178
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: PLP; 1.70A {Nostoc SP}
SCOP: c.67.1.3
Length = 393
Score = 41.9 bits (99), Expect = 3e-04
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 148 PKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
P ++A VH+ TGA PL+ + E+ + G L VD V ++G
Sbjct: 160 PAILAL--VHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLG 201
Score = 41.9 bits (99), Expect = 3e-04
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 260 PKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
P ++A VH+ TGA PL+ + E+ + G L VD V ++G
Sbjct: 160 PAILAL--VHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLG 201
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Length = 379
Score = 41.2 bits (97), Expect = 5e-04
Identities = 33/190 (17%), Positives = 61/190 (32%), Gaps = 40/190 (21%)
Query: 244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAV 300
+ + + +V V + +G I +K L E H G L +D + +
Sbjct: 120 APVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIASG 179
Query: 301 GLYGEHGA-GIGERDGQLHNMDI-ISGTLGKAFG---------------------NIGGY 337
++ + GI D+ IS K + +
Sbjct: 180 CVWLDMKELGI----------DVLISAP-QKGWSSTPCAGLVMLSAAAIKKVESTESNCF 228
Query: 338 IVGTKNFIDTIRSYAAGFIFTTSLPPT-VLAGAREAIRILSSQEGVE-LRAKHQDIVAYL 395
+ K ++ +R+Y G + PT L R+AI + G + LR ++ +
Sbjct: 229 SLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEA-KEIGFDILRDAQWELGNRV 287
Query: 396 RNELIQIGFP 405
R L G
Sbjct: 288 RKVLTDKGIE 297
Score = 34.7 bits (80), Expect = 0.065
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEV 185
+ + + +V V + +G I +K L E H G L +D +
Sbjct: 120 APVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCI 176
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP;
2.58A {Klebsiella pneumoniae}
Length = 411
Score = 40.7 bits (96), Expect = 8e-04
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 148 PKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
P+L+ V T + PL EL E+ ++ AL + D ++G
Sbjct: 139 PRLLLT--VQGDTSTTMLQPLAELGEICRRYDALFYTDATASLG 180
Score = 40.7 bits (96), Expect = 8e-04
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 260 PKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
P+L+ V T + PL EL E+ ++ AL + D ++G
Sbjct: 139 PRLLLT--VQGDTSTTMLQPLAELGEICRRYDALFYTDATASLG 180
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase;
PLP, structural genomics, NPPSFA; HET: PLP; 1.90A
{Pyrococcus horikoshii}
Length = 386
Score = 39.9 bits (94), Expect = 0.001
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 149 KLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
+ V ++ TG + PL EL +V+ +H L FVD V A+G
Sbjct: 148 EAVTI--TYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMG 188
Score = 39.9 bits (94), Expect = 0.001
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 261 KLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
+ V ++ TG + PL EL +V+ +H L FVD V A+G
Sbjct: 148 EAVTI--TYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMG 188
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase
involved in aluminum resist structural genomics; HET:
MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Length = 427
Score = 40.2 bits (94), Expect = 0.001
Identities = 22/142 (15%), Positives = 42/142 (29%), Gaps = 23/142 (16%)
Query: 63 EKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQ---GIR 119
+ + V F + A + LF + PG +S G + GI
Sbjct: 79 DAVYARVFNTESALVRPHFVNGTHALGAALFGNLR--PGNTMLSVCGEPYDTLHDVIGIT 136
Query: 120 NSSAPK------IIYRHNDVNHLTQV-LENMDVKI---PKLVAFETVHSMTGAICP---- 165
+S I Y+ D+ + LE ++ + + S
Sbjct: 137 ENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLI 196
Query: 166 --LKELCEVSH--QHGALTFVD 183
+K + + + + FVD
Sbjct: 197 EDIKSIVDCVKNIRKDIICFVD 218
Score = 30.5 bits (69), Expect = 1.2
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 14/86 (16%)
Query: 272 TGAICPLKELCEVSH--QHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK 329
I +K + + + + FVD + + + +G D+I+G+L K
Sbjct: 193 ALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTDVG--------ADLIAGSLIK 244
Query: 330 AFGN----IGGYIVGTKNFIDTIRSY 351
G GGY+ GTK+ I+
Sbjct: 245 NIGGGIAPTGGYLAGTKDCIEKTSYR 270
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase;
HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Length = 420
Score = 39.4 bits (93), Expect = 0.002
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 149 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD 183
KLV + + G + P +E+ +++HQ GA VD
Sbjct: 171 KLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVD 205
Score = 39.4 bits (93), Expect = 0.002
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD 295
KLV + + G + P +E+ +++HQ GA VD
Sbjct: 171 KLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVD 205
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 38.9 bits (91), Expect = 0.003
Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 28/110 (25%)
Query: 380 EGVELRAKH-QDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNT---------KICD 429
EG + YL +L + F + P LN ++C
Sbjct: 305 EGQRKIVNECMENTLYLYKKLKENNFKP-----------VIEPILNIVAIEDEDYKEVCK 353
Query: 430 MLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK 479
L +++G YV N +R+ P RE ID F+ L ++ +
Sbjct: 354 KL-RDRGIYVSVCNCVKA------LRIVVMPHIKREHIDNFIEILNSIKR 396
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 38.9 bits (90), Expect = 0.003
Identities = 41/273 (15%), Positives = 79/273 (28%), Gaps = 37/273 (13%)
Query: 244 DVNHLTQVLENMDVKIPKLVAFETVH-SMTGAICP---LKELCEVSHQHGALTFVD---- 295
D+ L + +E + + S G LK + ++ ++ +D
Sbjct: 168 DLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARF 227
Query: 296 ----EVHAVGLYGEHGAGIGERDGQLHNM-DIISGTLGKAFG-NIGGYIVGTK-NFIDTI 348
I + + + D+++ + K +GG + +F D
Sbjct: 228 AENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVY 287
Query: 349 RSYAAGFIFTTSLPPT-VLAGAREAIRILSSQEGVELRAKHQDI--VAYLRNELIQIGFP 405
+ P L G + +G+ L I V YL + L +IG
Sbjct: 288 TECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVV 347
Query: 406 VEHTPSHIIPIKIGNPALN--------TKICDMLLKEKG----------HYVQPINYPTV 447
+ H + G + + L K G P +
Sbjct: 348 CQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQL 407
Query: 448 PVGEEKIRLA-PTPFHTREMIDKFVTDLLAVWK 479
P E +RL P +T+ +D + V +
Sbjct: 408 PCPAELLRLTIPRATYTQTHMDFIIEAFKHVKE 440
Score = 31.9 bits (72), Expect = 0.56
Identities = 14/148 (9%), Positives = 33/148 (22%), Gaps = 30/148 (20%)
Query: 64 KLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGI----- 118
L E V + + + A + L K +
Sbjct: 78 ALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIK--KREQEKGLDRSKMVAFSNYFFDTT 135
Query: 119 -------------------RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH-S 158
++ + D+ L + +E + + S
Sbjct: 136 QGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNS 195
Query: 159 MTGAICP---LKELCEVSHQHGALTFVD 183
G LK + ++ ++ +D
Sbjct: 196 AGGQPVSLANLKAMYSIAKKYDIPVVMD 223
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog;
NP_348457.1, putative cystathionine beta-lyase involved
in A resistance; HET: LLP MSE; 2.00A {Clostridium
acetobutylicum}
Length = 427
Score = 39.0 bits (91), Expect = 0.003
Identities = 18/141 (12%), Positives = 44/141 (31%), Gaps = 22/141 (15%)
Query: 63 EKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQ---GIR 119
+++ ++ F + A + LF + P +S G + G+
Sbjct: 80 DRVYANIFNTESAFVRPHFVNGTHAIGAALFGNLR--PNDTMMSICGMPYDTLHDIIGMD 137
Query: 120 NSSAPK------IIYRHNDVNHLTQVLENMDVKIP-----KLVAFET----VHSMTGAIC 164
+S + Y+ D+ + + ++ KL+ + + I
Sbjct: 138 DSKKVGSLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIA 197
Query: 165 PLKELCEVSH--QHGALTFVD 183
+ E+ + + FVD
Sbjct: 198 EIAEIIKSIREVNENVIVFVD 218
Score = 29.8 bits (67), Expect = 2.2
Identities = 34/214 (15%), Positives = 65/214 (30%), Gaps = 37/214 (17%)
Query: 238 IIYRHNDVNHLTQVLENMDVKIP-----KLVAFET----VHSMTGAICPLKELCEVSH-- 286
+ Y+ D+ + + ++ KL+ + + I + E+ +
Sbjct: 150 VKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREV 209
Query: 287 QHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN----IGGYIVGTK 342
+ FVD + + + +G DII+G+L K G GGYI G +
Sbjct: 210 NENVIVFVDNCYGEFVEEKEPTDVG--------ADIIAGSLIKNIGGGIATTGGYIAGKE 261
Query: 343 NFIDTI--RSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELR-AKHQDIVAYLRNEL 399
++ R G V+ E + + ++ A +
Sbjct: 262 EYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMAPHVTIEAVKGAVFCA------RIM 315
Query: 400 IQIGFPV----EHTPSHII-PIKIGNPALNTKIC 428
GF V + II IK +
Sbjct: 316 ELAGFDVLPKYNDKRTDIIQAIKFNDEKKLIDFI 349
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal
phosphate, structural PSI, protein structure initiative;
HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB:
1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Length = 406
Score = 38.6 bits (91), Expect = 0.004
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 149 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD 183
+L+A V ++ G PL E+ ++HQHGA VD
Sbjct: 166 RLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVD 200
Score = 38.6 bits (91), Expect = 0.004
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD 295
+L+A V ++ G PL E+ ++HQHGA VD
Sbjct: 166 RLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVD 200
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis,
pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A
{Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A*
1i43_A*
Length = 445
Score = 38.0 bits (89), Expect = 0.006
Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 11/124 (8%)
Query: 65 LEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDA---GNHASMIQGIRNS 121
LEE ++ L E+ L+ S A+ L L G H ++ I+ I
Sbjct: 119 LEEKISALEGAESTLLMASGMCASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETI--- 173
Query: 122 SAPK--IIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGAL 179
PK I D + + ++ K L E+ + ++ + ++ H+ GAL
Sbjct: 174 -LPKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGAL 232
Query: 180 TFVD 183
+D
Sbjct: 233 VCID 236
Score = 28.8 bits (65), Expect = 4.9
Identities = 9/52 (17%), Positives = 22/52 (42%)
Query: 244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD 295
D + + ++ K L E+ + ++ + ++ H+ GAL +D
Sbjct: 185 DPADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCID 236
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 38.0 bits (88), Expect = 0.007
Identities = 35/235 (14%), Positives = 74/235 (31%), Gaps = 38/235 (16%)
Query: 271 MTGAICPLKELCEVSHQHGALTFVDEVHAVGL---YGEHGAGIGERDGQLHNMDIISG-- 325
G + P+ E+ ++ +HG VD + G + D +L + +S
Sbjct: 251 PHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADT 310
Query: 326 -TLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLP------PTVLAGAREAIRILSS 378
G + + + + P PT AG+R ++
Sbjct: 311 HKYGYGAKGTSVILYRRPDLLHYQ------YFIAADWPGGLYFSPT-FAGSRPGALSATA 363
Query: 379 --------QEG-VELRAKHQDIVAYLRNELIQI-GFPVEHTPSHIIPIKIGNPALNTKIC 428
+EG ++ + L+ + I + P +I + + LN
Sbjct: 364 WAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLWVI--AVASDELNIYQV 421
Query: 429 DMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFH-TREMIDKFVTDLLAVWKSLD 482
+ +G + ++ P +A T H ++D+F+ DL +
Sbjct: 422 MEEMAGRGWRLNGLHRP------PAFHVALTLRHTEPGVVDRFLADLQDAVAQVR 470
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 37.5 bits (88), Expect = 0.008
Identities = 38/185 (20%), Positives = 60/185 (32%), Gaps = 40/185 (21%)
Query: 272 TGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHG--AGIGERDGQLHNMDIISGT 326
TGA+ L+EL E++ + GA DEV+ + + ++ I +
Sbjct: 167 TGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDK-------GIAVNS 219
Query: 327 LGKAFGNIG---GYIVGTKNFID---TIRSYAAGFIFTTSLPPTVL-AGAREAIRILSSQ 379
L K + G G++ D R Y T A+ A+ Q
Sbjct: 220 LSKTYSLPGIRIGWVAANHQVTDILRDYRDY------TMICAGVFDDLVAQLALA--HYQ 271
Query: 380 EGVELRAKHQDIVAYLRN-ELIQIGFPVEHTPSHIIP-------IKIGNPALNTKICDML 431
E +E N ++ E S+I P +KI C L
Sbjct: 272 EILERNRH-----ILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDMPMEDFCLQL 326
Query: 432 LKEKG 436
L+E G
Sbjct: 327 LQEHG 331
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP,
pyridoxal phosphate, HOMO- oligomerization, unknown
function; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.67.1.8 PDB: 2aev_A*
Length = 374
Score = 37.5 bits (87), Expect = 0.009
Identities = 25/137 (18%), Positives = 53/137 (38%), Gaps = 21/137 (15%)
Query: 56 SGNSLFHEKLEEDVAKLHQK----EAGLVFTSCYVANDSTLFTLGKMIPG--LHYISDAG 109
G+S F EK+ E H + + F A +T+ L P +HY+ +
Sbjct: 54 IGSSYFAEKVNE-YGLKHLGGDENDKCVGFNRTSSAILATILALK---PKKVIHYLPELP 109
Query: 110 NHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---L 166
H S+ + + + ++ + + + ++L +D + T +M +
Sbjct: 110 GHPSIERSCK-----IVNAKYFESDKVGEILNKID---KDTLVIITGSTMDLKVIELENF 161
Query: 167 KELCEVSHQHGALTFVD 183
K++ + A+ FVD
Sbjct: 162 KKVINTAKNKEAIVFVD 178
Score = 33.7 bits (77), Expect = 0.15
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 14/93 (15%)
Query: 267 TVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDII 323
T +M + K++ + A+ FVD+ + + D++
Sbjct: 147 TGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLF----NQPPALKLGADLV 202
Query: 324 --SGT--LGKAFGNIGGYIVGTKNFIDTIRSYA 352
S + G GG + G K +D I
Sbjct: 203 VTSTDKLME---GPRGGLLAGKKELVDKIYIEG 232
>1iug_A Putative aspartate aminotransferase; wild type,
pyridoxal-5'-phosphate form, riken structural
genomics/proteomics initiative, RSGI; HET: LLP; 2.20A
{Thermus thermophilus} SCOP: c.67.1.3
Length = 352
Score = 36.0 bits (84), Expect = 0.024
Identities = 24/179 (13%), Positives = 45/179 (25%), Gaps = 44/179 (24%)
Query: 260 PKLVAFETVH--SMTGAICPLKELCEVSHQHG--ALTFVDEVHAVGLYGEHGAGIGERDG 315
+ VH + TGA+ L L + L D V ++
Sbjct: 122 YAGLLL--VHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLL-------------V 166
Query: 316 QLHNMD------IISGTLGKAFGN---IGGYIVGTK------------NFIDTIRSYAAG 354
++ SG+ K +G + + + +++ G
Sbjct: 167 GEVALEAMGVDAAASGS-QKGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEG 225
Query: 355 FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGF-PVEHTPSH 412
T ++ + + E A A L + G PV S
Sbjct: 226 ESAWTP-AINLVLAVAAVLEEV-LPRLEEHLALKAWQNALLYGVGEEGGLRPVPKRFSP 282
Score = 33.7 bits (78), Expect = 0.12
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
Query: 148 PKLVAFETVH--SMTGAICPLKELCEVSHQHG--ALTFVDEVHAVG 189
+ VH + TGA+ L L + L D V ++
Sbjct: 122 YAGLLL--VHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLL 165
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'-
phosphate, calcium binding site, structural genomics,
PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP:
c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Length = 347
Score = 35.4 bits (82), Expect = 0.037
Identities = 29/137 (21%), Positives = 56/137 (40%), Gaps = 23/137 (16%)
Query: 64 KLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNH--------ASMI 115
+LE A+ KEA L S + N ++ + G I +A +H +++
Sbjct: 42 ELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQ--RGDEVILEADSHIFWYEVGAMAVL 99
Query: 116 QGIRNSSAPKIIYRHNDVNHLTQVLENM---DVKIP--KLVAFETVHSMT-GAICPLKEL 169
G+ P + N V + + ++ P L+A E H+ + G + PL+ +
Sbjct: 100 SGV----MPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENI 155
Query: 170 ---CEVSHQHGALTFVD 183
C ++ +HG +D
Sbjct: 156 KEICTIAKEHGINVHID 172
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate
aminotransferase, pyridoxal-5-phosphate, SAD, glycolate
pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae}
SCOP: c.67.1.3
Length = 385
Score = 35.3 bits (82), Expect = 0.042
Identities = 29/191 (15%), Positives = 63/191 (32%), Gaps = 53/191 (27%)
Query: 244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHG--ALTFVDEVHAVG 301
+ +T+ L + +T S T + LK + + Q VD V ++G
Sbjct: 125 PLELITEKLSQNSYGAVTVTHVDT--S-TAVLSDLKAISQAIKQTSPETFFVVDAVCSIG 181
Query: 302 LYGEHGAGIGERDGQLHNMD------IISGTLGKAFG----------------------- 332
+ D ++ + KA G
Sbjct: 182 -------------CEEFEFDEWGVDFALTAS-QKAIGAPAGLSISLCSSRFMDYALNDSK 227
Query: 333 --NIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPT-VLAGAREAIRILSSQEGVELR-AKH 388
++ GY + + + +Y AG + PP ++ A++ + +EG+ R H
Sbjct: 228 NGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEI-LEEGLHKRWDLH 286
Query: 389 QDIVAYLRNEL 399
+++ + ++ L
Sbjct: 287 REMSDWFKDSL 297
Score = 34.6 bits (80), Expect = 0.075
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHG--ALTFVDEVHAVG 189
+ +T+ L + +T S T + LK + + Q VD V ++G
Sbjct: 125 PLELITEKLSQNSYGAVTVTHVDT--S-TAVLSDLKAISQAIKQTSPETFFVVDAVCSIG 181
>3pj0_A LMO0305 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Length = 359
Score = 35.4 bits (82), Expect = 0.042
Identities = 22/132 (16%), Positives = 41/132 (31%), Gaps = 18/132 (13%)
Query: 64 KLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNH--------ASMI 115
E +AK+ K++ + F S +A L +H +
Sbjct: 52 DFETKIAKILGKQSAVFFPSGTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQDGLKEL 111
Query: 116 QGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCE 171
Q I P ++ N + + + + V E G P L+++ E
Sbjct: 112 QQIT----PLLLGTANQLLTIDDIKSL--REPVSSVLIELPQREIGGQLPAFEELEKISE 165
Query: 172 VSHQHGALTFVD 183
H+ G +D
Sbjct: 166 YCHEQGISLHLD 177
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 35.4 bits (81), Expect = 0.046
Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 6/105 (5%)
Query: 383 ELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPI----KIGNPALNT-KICDMLLKEKGH 437
+ ++ + LR L + + +P+ + +I D +L+ G
Sbjct: 342 NVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISD-MLRRYGW 400
Query: 438 YVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD 482
V P +R+ +R + ++ V D+ V + LD
Sbjct: 401 IVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELD 445
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent
enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A
{Escherichia coli} SCOP: c.67.1.3
Length = 386
Score = 35.2 bits (82), Expect = 0.050
Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 10/123 (8%)
Query: 65 LEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDA----GNHASMIQGIRN 120
++ +A+L ++ + A K PG ++ G++ +
Sbjct: 57 VQRALAELEGGAGAVLTNTGMSAIHLVTTVFLK--PGDLLVAPHDCYGGSYRLFDSLAKR 114
Query: 121 SSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALT 180
D + + K PKLV E+ + + + ++C ++ + GA++
Sbjct: 115 GC---YRVLFVDQGDEQALRAALAEK-PKLVLVESPSNPLLRVVDIAKICHLAREVGAVS 170
Query: 181 FVD 183
VD
Sbjct: 171 VVD 173
Score = 29.8 bits (68), Expect = 2.2
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 260 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD 295
PKLV E+ + + + ++C ++ + GA++ VD
Sbjct: 138 PKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVD 173
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics
center for infectious disease, S mycobacterium, PLP,
schiff base; HET: LLP; 1.85A {Mycobacterium
tuberculosis}
Length = 414
Score = 34.8 bits (81), Expect = 0.061
Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 12/124 (9%)
Query: 65 LEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDA---GNHASMIQGIRNS 121
EE + + A S A ++L L G ++ G+ + I
Sbjct: 86 FEERLRLIEGAPAAFATASGMAAVFTSLGALLG--AGDRLVAARSLFGSCFVVCSEIL-- 141
Query: 122 SAPK--IIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGAL 179
P+ + D + L+Q + V + V FET + ++ + + E++H GA
Sbjct: 142 --PRWGVQTVFVDGDDLSQWERALSVP-TQAVFFETPSNPMQSLVDIAAVTELAHAAGAK 198
Query: 180 TFVD 183
+D
Sbjct: 199 VVLD 202
Score = 32.9 bits (76), Expect = 0.25
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 23/98 (23%)
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY---GEHGAGIGERDGQL 317
+ V FET + ++ + + E++H GA +D V A L G
Sbjct: 168 QAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGV--------- 218
Query: 318 HNMDII--SGTLGKAFGN----IGGYIVGTKNFIDTIR 349
D++ SGT K +GG I+G + +ID
Sbjct: 219 ---DVVVYSGT--KHIDGQGRVLGGAILGDREYIDGPV 251
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate,
PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A
{Escherichia coli}
Length = 755
Score = 35.1 bits (80), Expect = 0.065
Identities = 23/140 (16%), Positives = 45/140 (32%), Gaps = 10/140 (7%)
Query: 273 GAICPLKELCEVSHQHGALTFVDEVHA-----VGLYGEHGAGIGERDGQLHNMDIISGTL 327
G KE ++ + DE +Y +H A GE + +
Sbjct: 325 GVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHST 384
Query: 328 GKAFGNIGG----YIVGTKNFIDTIR-SYAAGFIFTTSLPPTVLAGAREAIRILSSQEGV 382
K + ++ + I+ R + A TTS + A A+ ++ G+
Sbjct: 385 HKLLNALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGL 444
Query: 383 ELRAKHQDIVAYLRNELIQI 402
L + D R + ++
Sbjct: 445 SLTQEVIDEAVDFRQAMARL 464
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics,
seattle structural genomics center for infectious
disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A
{Mycobacterium ulcerans} PDB: 3qi6_A*
Length = 392
Score = 34.8 bits (81), Expect = 0.066
Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 10/123 (8%)
Query: 65 LEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDA----GNHASMIQGIRN 120
LE +A + G F+S A D L + + PG H + G + +
Sbjct: 71 LEAALAAVEDAAFGRAFSSGMAAADCALRAMLR--PGDHVVIPDDAYGGTFRLIDKVFTG 128
Query: 121 SSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALT 180
+ + Y + L V + +L+ ET + +I + + ++ A
Sbjct: 129 WN---VEYTPVALADLDAVRAAIRPT-TRLIWVETPTNPLLSIADIAGIAQLGADSSAKV 184
Query: 181 FVD 183
VD
Sbjct: 185 LVD 187
Score = 29.4 bits (67), Expect = 3.2
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 260 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD 295
+L+ ET + +I + + ++ A VD
Sbjct: 152 TRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVD 187
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine
biosynthesis, transsulfurat lyase; HET: PLP; 2.30A
{Arabidopsis thaliana} SCOP: c.67.1.3
Length = 464
Score = 34.6 bits (80), Expect = 0.077
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 65 LEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYIS--DA--GNHASMIQGIRN 120
LE +AKL + + FTS A + + G ++ D G+ + Q +
Sbjct: 138 LESLLAKLDKADRAFCFTSGMAALSAVTHLIK---NGEEIVAGDDVYGGSDRLLSQVVPR 194
Query: 121 SSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALT 180
S ++ + + L +V + + KLV E+ + I ++++ E++H GAL
Sbjct: 195 SG---VVVKRVNTTKLDEVAAAIGPQ-TKLVWLESPTNPRQQISDIRKISEMAHAQGALV 250
Query: 181 FVD 183
VD
Sbjct: 251 LVD 253
Score = 29.6 bits (67), Expect = 2.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 275 ICPLKELCEVSHQHGALTFVD 295
I ++++ E++H GAL VD
Sbjct: 233 ISDIRKISEMAHAQGALVLVD 253
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A
{Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A*
1ukj_A* 2o7c_A*
Length = 398
Score = 34.4 bits (80), Expect = 0.089
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 12/124 (9%)
Query: 65 LEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDA---GNHASMIQGIRNS 121
LE +A L EAGL S A STL+TL + PG + G + +
Sbjct: 70 LEARMASLEGGEAGLALASGMGAITSTLWTLLR--PGDEVLLGNTLYGCTFAFLHHGI-- 125
Query: 122 SAPK--IIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGAL 179
+ + RH D+ L + M +++ FE+ + + + + +++ +HGA
Sbjct: 126 --GEFGVKLRHVDMADLQALEAAMTPA-TRVIYFESPANPNMHMADIAGVAKIARKHGAT 182
Query: 180 TFVD 183
VD
Sbjct: 183 VVVD 186
Score = 28.7 bits (65), Expect = 4.8
Identities = 7/35 (20%), Positives = 19/35 (54%)
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD 295
+++ FE+ + + + + +++ +HGA VD
Sbjct: 152 RVIYFESPANPNMHMADIAGVAKIARKHGATVVVD 186
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural
genomics, PSI-2, protein structure initiative; HET: MSE;
1.90A {Silicibacter pomeroyi dss-3}
Length = 391
Score = 34.0 bits (79), Expect = 0.10
Identities = 26/152 (17%), Positives = 43/152 (28%), Gaps = 28/152 (18%)
Query: 272 TGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG 328
TG + + L E + GA DE++ Y E + + +
Sbjct: 174 TGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDEC----YVINSFS 229
Query: 329 KAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVL-AGAREAIRILSSQEGVEL 384
K F G G++V ++ + + A P A A L ++
Sbjct: 230 KYFSMTGWRVGWMVVPEDQVRVVERIAQ---NMFICAPHASQVAALAA---LDCDAELQA 283
Query: 385 RAKHQDIVAYLRN------ELIQIGFPVEHTP 410
Y N L + GF P
Sbjct: 284 NLD-----VYKANRKLMLERLPKAGFTRIAPP 310
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba
histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A*
3aeo_A* 3aep_A*
Length = 389
Score = 33.6 bits (78), Expect = 0.12
Identities = 27/124 (21%), Positives = 43/124 (34%), Gaps = 12/124 (9%)
Query: 65 LEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDA---GNHASMIQGIRNS 121
EE V + F S A S+ + G H I+ G S+
Sbjct: 64 FEEMVCSIEGAAGSAAFGSGMGAISSSTLAFLQ--KGDHLIAGDTLYGCTVSLFTHWL-- 119
Query: 122 SAPK--IIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGAL 179
P+ I D + + +V K+V E+ + T + +K + V H+ GA
Sbjct: 120 --PRFGIEVDLIDTSDVEKVKAAWKPNT-KMVYLESPANPTCKVSDIKGIAVVCHERGAR 176
Query: 180 TFVD 183
VD
Sbjct: 177 LVVD 180
Score = 29.0 bits (66), Expect = 4.1
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD 295
K+V E+ + T + +K + V H+ GA VD
Sbjct: 146 KMVYLESPANPTCKVSDIKGIAVVCHERGARLVVD 180
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance;
putative cystathionine beta-lyase involved in aluminum
resis structural genomics; HET: LLP; 1.91A {Listeria
monocytogenes str} PDB: 3fd0_A*
Length = 409
Score = 33.6 bits (77), Expect = 0.13
Identities = 27/158 (17%), Positives = 46/158 (29%), Gaps = 24/158 (15%)
Query: 63 EKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQ---GIR 119
E++ V K S A + LF + + P + G ++ GIR
Sbjct: 65 ERVYATVFKTEAALVRPQIISGTHAISTVLFGILR--PDDELLYITGQPYDTLEEIVGIR 122
Query: 120 NSSAPK-----IIYRHNDVNHLTQV-LENMDVKI---PKLVAFETVHSMTGA----ICPL 166
I Y + V + K+ K++ + I +
Sbjct: 123 KQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKI 182
Query: 167 KELCEVSHQHG--ALTFVDEVHAVGLYG----EHGAGI 198
KE+ + FVD + + E GA I
Sbjct: 183 KEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADI 220
Score = 30.1 bits (68), Expect = 1.7
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 22/85 (25%)
Query: 275 ICPLKELCEVSHQHG--ALTFVDEVHAVGLYG----EHGAGIGERDGQLHNMDIISGTLG 328
I +KE+ + FVD + + E GA DII+G+L
Sbjct: 179 IEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGA------------DIIAGSLI 226
Query: 329 KAFG----NIGGYIVGTKNFIDTIR 349
K G GGYI G + +D
Sbjct: 227 KNPGGGLAKTGGYIAGKEALVDLCG 251
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1,
pyridoxal-5'-phosphate dependent racemase, pyrid
phosphate, isomerase; HET: PLP; 2.21A {Achromobacter
obae} PDB: 2zuk_A* 3dxw_A*
Length = 439
Score = 33.7 bits (78), Expect = 0.14
Identities = 28/141 (19%), Positives = 50/141 (35%), Gaps = 31/141 (21%)
Query: 278 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM-------DIISGTLGKA 330
L++ ++ HG L DEV G+ R G+LH DI+ LGK
Sbjct: 224 LRKFADICRAHGILVVCDEVK---------VGLA-RSGRLHCFEHEGFVPDIL--VLGKG 271
Query: 331 FGN---IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAK 387
G + ++ +D +A + T P A + + ++ + A
Sbjct: 272 LGGGLPLSA-VIAPAEILD---CASAFAMQTLHGNPISAAAGLAVLETI-DRDDLPAMA- 325
Query: 388 HQDIVAYLRNEL--IQIGFPV 406
+ LR+ L + P+
Sbjct: 326 -ERKGRLLRDGLSELAKRHPL 345
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent
enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB:
1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Length = 398
Score = 33.7 bits (78), Expect = 0.14
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 14/125 (11%)
Query: 65 LEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDA----GNHASMIQGIRN 120
LE+ +A L + EAGL S A +TL TL + G H +S + HA + +
Sbjct: 69 LEKKLAVLERGEAGLATASGISAITTTLLTLCQ--QGDHIVSASAIYGCTHAFL-----S 121
Query: 121 SSAPK--IIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGA 178
S PK I R D ++ M + K+V ET + T ++ ++ + ++HQ GA
Sbjct: 122 HSMPKFGINVRFVDAAKPEEIRAAMRPE-TKVVYIETPANPTLSLVDIETVAGIAHQQGA 180
Query: 179 LTFVD 183
L VD
Sbjct: 181 LLVVD 185
Score = 30.6 bits (70), Expect = 1.3
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 23/98 (23%)
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG---EHGAGIGERDGQL 317
K+V ET + T ++ ++ + ++HQ GAL VD + GA
Sbjct: 151 KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGA--------- 201
Query: 318 HNMDII--SGTLGKAFGN----IGGYIVGTKNFIDTIR 349
DI+ S T K IGG IVG + FID R
Sbjct: 202 ---DIVVHSVT--KYINGHGDVIGGIIVGKQEFIDQAR 234
>3nra_A Aspartate aminotransferase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Length = 407
Score = 33.7 bits (78), Expect = 0.15
Identities = 14/123 (11%), Positives = 36/123 (29%), Gaps = 19/123 (15%)
Query: 272 TGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISGTL 327
G + + ++ ++ ++GA D++++ Y G + +
Sbjct: 192 AGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGP 251
Query: 328 GKAFGNIG---GYIVGTKNFID---TIRSYAAGFIFTTSLPPTVL-AGAREAIRILSSQE 380
K G G G++ I +++ + A R +
Sbjct: 252 SKTESLSGYRLGVAFGSRAIIARMEKLQAI------VSLRAAGYSQAVLRGWFD--EAPG 303
Query: 381 GVE 383
+E
Sbjct: 304 WME 306
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 33.3 bits (77), Expect = 0.18
Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 36/175 (20%)
Query: 245 VNHLTQVLENMDVKIPKLVA---FETVHSMTGAICP----LKELCEVSHQHGALTFVDEV 297
+++ +++ +A E + S G I + L G L +DE
Sbjct: 189 LDYAFDLIDRQS---SGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEA 245
Query: 298 HAVGLYGEHGAGIGERDGQLHNM-------DIISGTLGKAFGN---IGGYIVGTKNFIDT 347
G+G R G + DI+ TL K G + IV + +
Sbjct: 246 Q---------TGVG-RTGTMFACQRDGVTPDIL--TLSKTLGAGLPLAA-IVTSAAIEER 292
Query: 348 IRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI 402
F T P A + ++ ++G+ RA + LR L+ +
Sbjct: 293 AHELGYLFYTTHVSDPLPAAVGLRVLDVV-QRDGLVARA--NVMGDRLRRGLLDL 344
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine
BEAT-lyase, aluminium resistance protein, Q81A77_baccr,
NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Length = 431
Score = 33.2 bits (76), Expect = 0.22
Identities = 24/139 (17%), Positives = 40/139 (28%), Gaps = 20/139 (14%)
Query: 63 EKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSS 122
EK+ DV S A + LF + + PG + G ++ I
Sbjct: 71 EKVYADVFGAEAGLVRPQIISGTHAISTALFGILR--PGDELLYITGKPYDTLEEIVGVR 128
Query: 123 APK--------IIYRHNDVNHLTQV-LENMDVKI---PKLVAFETVHSMTG----AICPL 166
I Y + V E + I K++ + I +
Sbjct: 129 GKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQI 188
Query: 167 KELCEVSH--QHGALTFVD 183
KE+ + + FVD
Sbjct: 189 KEMIAFVKEIKPDVVVFVD 207
Score = 31.6 bits (72), Expect = 0.61
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
Query: 275 ICPLKELCEVSH--QHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG 332
I +KE+ + + FVD + + + +G D+++G+L K G
Sbjct: 185 ISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCHVG--------ADLMAGSLIKNPG 236
Query: 333 N----IGGYIVGTKNFIDTIR 349
GGYIVG + +++
Sbjct: 237 GGIVKTGGYIVGKEQYVEACA 257
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal
5'-phosphate, thiocystei aminoacrylate, enzyme-product
complex; HET: PDA; 1.55A {Synechocystis SP} SCOP:
c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Length = 390
Score = 32.9 bits (76), Expect = 0.27
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 149 KLVAFETVHSMTGAICPLKELCEVSHQHG----ALTFVD 183
+LV + TG + PL E+ V +H VD
Sbjct: 156 RLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVD 194
Score = 32.9 bits (76), Expect = 0.27
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHG----ALTFVD 295
+LV + TG + PL E+ V +H VD
Sbjct: 156 RLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVD 194
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism
PLP-dependent enzyme family, CYST gamma lyase,
pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae
PV} PDB: 3e6g_A* 3nnp_A*
Length = 400
Score = 32.5 bits (75), Expect = 0.29
Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 10/123 (8%)
Query: 65 LEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDA----GNHASMIQGIRN 120
E VA L F S A + + L G H ++ G + + +R
Sbjct: 72 YERCVAALEGGTRAFAFASGMAATSTVMELLD---AGSHVVAMDDLYGGTFR-LFERVRR 127
Query: 121 SSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALT 180
+A + + D+ + K+V ET + + + + ++ +HG LT
Sbjct: 128 RTA-GLDFSFVDLTDPAAFKAAIRAD-TKMVWIETPTNPMLKLVDIAAIAVIARKHGLLT 185
Query: 181 FVD 183
VD
Sbjct: 186 VVD 188
Score = 29.0 bits (66), Expect = 3.5
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 260 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD 295
K+V ET + + + + ++ +HG LT VD
Sbjct: 153 TKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVD 188
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 32.7 bits (74), Expect = 0.32
Identities = 27/215 (12%), Positives = 52/215 (24%), Gaps = 19/215 (8%)
Query: 272 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF 331
+ E+ ++ + ++ +A+ ++ + S
Sbjct: 244 PRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTP 303
Query: 332 GNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDI 391
G FI I G S P V ++ + S+ +EL ++
Sbjct: 304 IGGGLVYSTDAEFIKEISLSYPG---RASATPVVNTLV--SLLSMGSKNYLELVKNQKNS 358
Query: 392 VAYLRNELIQIGF----PVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTV 447
L L + S I I + +I L T
Sbjct: 359 KKLLDELLNDLSKKTGGKFLDVESPIASC-ISVNSDPVEIAAKLYN-LRVTGPRGIKKTD 416
Query: 448 PVGEEKIRLAPTPFH--------TREMIDKFVTDL 474
G + + E I V+ L
Sbjct: 417 HFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKL 451
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A*
1szu_A* 1szs_A*
Length = 426
Score = 32.5 bits (75), Expect = 0.33
Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 31/135 (22%)
Query: 278 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM-------DIISGTLGKA 330
L+ LC +HG + DEV +G G R G L M D+ T K+
Sbjct: 225 LRALC---DEHGIMLIADEVQ---------SGAG-RTGTLFAMEQMGVAPDLT--TFAKS 269
Query: 331 FGN---IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAK 387
+ G + G +D + G T + P A E +++ QE + +A
Sbjct: 270 IAGGFPLAG-VTGRAEVMDAVA--PGGLGGTYAGNPIACVAALEVLKVF-EQENLLQKAN 325
Query: 388 HQDIVAYLRNELIQI 402
L++ L+ I
Sbjct: 326 DLG--QKLKDGLLAI 338
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane,
glycoprotein, transport, membrane, postsynaptic cell
membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus
norvegicus}
Length = 823
Score = 32.1 bits (72), Expect = 0.46
Identities = 13/65 (20%), Positives = 27/65 (41%)
Query: 79 LVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ 138
L+ S Y AN + T+ +M+ + D + G +S + K +R + + +
Sbjct: 601 LIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDK 660
Query: 139 VLENM 143
+ M
Sbjct: 661 MWTYM 665
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 31.8 bits (73), Expect = 0.48
Identities = 39/222 (17%), Positives = 72/222 (32%), Gaps = 48/222 (21%)
Query: 278 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQL-----HNM--DIISGTLGKA 330
++ELC + AL DEV G G G ++ DI+ GK
Sbjct: 257 MRELC---DEFDALLIFDEVQ---------TGCG-LTGTAWAYQQLDVAPDIV--AFGKK 301
Query: 331 FGNIGGYIVGTK-NFIDTIRSYAAGFIFTTSL-PPTVLAGAREAIRILSSQEGVELRAKH 388
G + G + + + + +T T + AR + ++ EG+ RA
Sbjct: 302 TQV-CGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVI-EAEGLFERAVQ 359
Query: 389 QDIVAYLRNELIQIGFPVEHTPSHI---------IPIKIGNPALNTKICDMLLKEKGHYV 439
YLR L ++ P+ + + A ++ L + V
Sbjct: 360 HG--KYLRARLDEL---AADFPAVVLDPRGRGLMCAFSLPTTADRDELIRQLWQRA---V 411
Query: 440 QPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481
+P G + +R P + ID + + + +
Sbjct: 412 I-----VLPAGADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase;
structural genomics, joint center for structural
genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium
sibiricum}
Length = 357
Score = 31.5 bits (72), Expect = 0.61
Identities = 16/134 (11%), Positives = 32/134 (23%), Gaps = 23/134 (17%)
Query: 64 KLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNH--------ASMI 115
E+ A + + + F S +A L H +
Sbjct: 51 PFEQKFADVLGMDDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKEL 110
Query: 116 QGI--RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKEL 169
I A + +++ L + E G + P L+ +
Sbjct: 111 HPIETILVGAADRLMTLDEIKALP---------DIACLLLELPQREIGGVAPAFSELETI 161
Query: 170 CEVSHQHGALTFVD 183
+ G +D
Sbjct: 162 SRYCRERGIRLHLD 175
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate
aminotransferase, structural genomics, joint center for
structural genomics; HET: MSE LLP PE4; 1.75A
{Porphyromonas gingivalis}
Length = 437
Score = 31.5 bits (72), Expect = 0.66
Identities = 23/206 (11%), Positives = 58/206 (28%), Gaps = 46/206 (22%)
Query: 272 TGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGE--RDGQLHNMD----I 322
T L+ + E++ +H + D + + + + GE + N +
Sbjct: 195 TWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYIL 254
Query: 323 ISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIF---------------TTSLPPT 364
KAF G G ++ + + +S
Sbjct: 255 ALS-SSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATH 313
Query: 365 VL-AGAREAIRILSSQEGVELRAKHQDIVAYLR------NELIQIGFPVEHTPSHIIPI- 416
G ++ + +G ++ Y R + GF + + P+
Sbjct: 314 SAQWGMAAMLK--ACNDGEY--NFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPLA 369
Query: 417 -----KIGNPALN-TKICDMLLKEKG 436
+G ++ +K+ + ++
Sbjct: 370 DGFYFTVGYKGMDSSKLIEKFVRYGM 395
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening,
ethylene biosynthesis, lyase, pyridoxal 5'-P binding;
HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A*
1m7y_A* 1ynu_A* 1b8g_A*
Length = 435
Score = 31.5 bits (72), Expect = 0.75
Identities = 21/156 (13%), Positives = 47/156 (30%), Gaps = 28/156 (17%)
Query: 272 TGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHG----AGIGERDGQLHNMD--- 321
G L L G DE+++ + + + N +
Sbjct: 204 LGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQ 263
Query: 322 ---IISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIR- 374
++ L K G G G I + + + + F +S +L+ +
Sbjct: 264 RVHVVYS-LSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKL 322
Query: 375 ----ILSSQEGVELRAKHQDIVAYLRNELIQIGFPV 406
I + + L+ + + +V+ L+ + G
Sbjct: 323 TKNYIAENHK--RLKQRQKKLVSGLQ----KSGISC 352
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 30.7 bits (70), Expect = 1.1
Identities = 43/222 (19%), Positives = 66/222 (29%), Gaps = 52/222 (23%)
Query: 278 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIG--------ERDGQLHNMDIISGTLGK 329
L+++ +HG VDEV G G E G D++ T K
Sbjct: 284 LRDIS---RKHGCAFLVDEVQ---------TGGGSTGKFWAHEHWGLDDPADVM--TFSK 329
Query: 330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSL-PPTVLAGAREAIRILSSQEGVELRAKH 388
GG+ + R A IF T L P+ E I I+ +E + A H
Sbjct: 330 KMMT-GGFFHK-----EEFRPNAPYRIFNTWLGDPSKNLLLAEVINII-KREDLLSNAAH 382
Query: 389 QDIVAYLRNELIQIGFPVEHTPSHI---------IPIKIGNPALNTKICDMLLKEKGHYV 439
L L+ + P I + ++ K+ + KG V
Sbjct: 383 --AGKVLLTGLLDLQ---ARYPQFISRVRGRGTFCSFDTPDESIRNKLISIAR-NKG--V 434
Query: 440 QPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481
G++ IR PT F+ +
Sbjct: 435 M-----LGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILADF 471
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 30.7 bits (69), Expect = 1.3
Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 9/109 (8%)
Query: 383 ELRAKHQDIVAYLRNELIQIGFP---VEHTPSHIIPI------KIGNPALNTKICDMLLK 433
+++ + AYL +E+ ++G P IP +P L+
Sbjct: 327 KVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLR 386
Query: 434 EKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD 482
+G V +R+ + + + D A K L
Sbjct: 387 LRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLS 435
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 30.4 bits (68), Expect = 1.4
Identities = 42/249 (16%), Positives = 81/249 (32%), Gaps = 42/249 (16%)
Query: 268 VHSMTGAICP-----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDI 322
+HS T P L+EL + + V+ A GL + ++ ++ +D
Sbjct: 202 LHSTTACFAPRVPDRLEELAVICANYDIPHVVNN--AYGLQSSKCMHLIQQGARVGRIDA 259
Query: 323 ISGTLGK-AFGNIGGYIVGTKN--FIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQ 379
+L K +GG I+ N FI I G S P++ + L
Sbjct: 260 FVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGR---ASASPSLDVLI--TLLSLGCS 314
Query: 380 EGVELRAKHQDIVAYLRNELIQI----GFPVEHTPSHIIPIKIGNPALN-------TKIC 428
+L + +++ YL +L ++ + TP + I + + ++ T++
Sbjct: 315 GYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLG 374
Query: 429 DMLLKE--KGHYVQPINYPTVPVGEE------KIRLAPTPFHT--------REMIDKFVT 472
ML G P+ G P + + +D F+
Sbjct: 375 SMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIK 434
Query: 473 DLLAVWKSL 481
L +
Sbjct: 435 RLDKCLNIV 443
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
bacterial structural genomics initiative, BSGI,
transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Length = 423
Score = 30.6 bits (70), Expect = 1.4
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVG 189
G + + + E+ G + VD +VG
Sbjct: 176 IGVVQDIAAIGEMCRARGIIYHVDATQSVG 205
Score = 30.6 bits (70), Expect = 1.4
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 272 TGAICPLKELCEVSHQHGALTFVDEVHAVG 301
G + + + E+ G + VD +VG
Sbjct: 176 IGVVQDIAAIGEMCRARGIIYHVDATQSVG 205
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine,
sepsecs, protein-RNA complex, alternative splicing,
cytoplasm, protein biosynthesis, pyridoxal phosphate,
selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Length = 501
Score = 30.1 bits (67), Expect = 2.1
Identities = 43/252 (17%), Positives = 85/252 (33%), Gaps = 48/252 (19%)
Query: 268 VHSMTGAICP-----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDI 322
+HS T P L+EL + + V+ A G+ + ++ ++ +D
Sbjct: 220 IHSTTSCFAPRVPDRLEELAVICANYDIPHIVNN--AYGVQSSKCMHLIQQGARVGRIDA 277
Query: 323 ISGTLGK-AFGNIGGYIVGTKN--FIDTIRSYAAGFIFTTSLPP---TVLAGAREAIRIL 376
+L K +GG I+ N FI I G + T+L+ +
Sbjct: 278 FVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYK-- 335
Query: 377 SSQEGVELRAKHQDIVAYLRNELIQI----GFPVEHTPSHIIPIKI-------GNPALNT 425
+L + +++ +YL N++ ++ + HTP + I + + T
Sbjct: 336 ------KLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVT 389
Query: 426 KICDMLLKE--KGHYVQPINYPTVPVGEE------KIRLAPTPFHT--------REMIDK 469
++ ML G V P+ G P + + +D
Sbjct: 390 QLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDL 449
Query: 470 FVTDLLAVWKSL 481
F+ L K++
Sbjct: 450 FIKRLDRCLKAV 461
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4,
CAMP, SP-camps, GEF, gunanine nucleotide exchange
factor, G-protein, GTP-binding, nucleotide-binding; HET:
SP1; 2.20A {Mus musculus}
Length = 694
Score = 30.2 bits (67), Expect = 2.1
Identities = 14/87 (16%), Positives = 24/87 (27%)
Query: 105 ISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC 164
+ + NH + P I + + +T E I LV FE + +
Sbjct: 583 MDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTAR 642
Query: 165 PLKELCEVSHQHGALTFVDEVHAVGLY 191
++ A V Y
Sbjct: 643 TVRYYRSQPFNPDAAQANKNHQDVRSY 669
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target
11246C, pyridoxal phosphate, PSI-2, protein structure
initiative; 1.70A {Deinococcus radiodurans}
Length = 430
Score = 29.9 bits (68), Expect = 2.3
Identities = 33/157 (21%), Positives = 58/157 (36%), Gaps = 37/157 (23%)
Query: 264 AF--ETVH-SMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQ 316
AF E V + A+ P + + ++ + G + DEV +G+G R G
Sbjct: 193 AFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVM---------SGMG-RCGS 242
Query: 317 LHNM--------DIISGTLGKAFGN----IGGYIVGTKNFIDTIRSYAAGFI--FTTSLP 362
+ DI LGK + G + + +T+ + F+ FT +
Sbjct: 243 PLALSRWSGVTPDIA--VLGKGLAAGYAPLAGLLAAPQ-VYETVMGGSGAFMHGFTYAGH 299
Query: 363 PTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNEL 399
P +A + I+ +E + AK + A L L
Sbjct: 300 PVSVAAGLSVLDIV-EREDLTGAAK--ERGAQLLAGL 333
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics,
NPPSFA, national PROJ protein structural and functional
analyses; 2.30A {Pseudomonas stutzeri}
Length = 453
Score = 29.9 bits (68), Expect = 2.4
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 126 IIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTF 181
++ R +D+ + +V N I E V S G L+E E++ Q+GAL
Sbjct: 181 LLIRPDDIEGMREVFANHGSDI-AAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFI 239
Query: 182 VDEV 185
+DEV
Sbjct: 240 LDEV 243
Score = 29.9 bits (68), Expect = 2.4
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 238 IIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTF 293
++ R +D+ + +V N I E V S G L+E E++ Q+GAL
Sbjct: 181 LLIRPDDIEGMREVFANHGSDI-AAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFI 239
Query: 294 VDEV 297
+DEV
Sbjct: 240 LDEV 243
>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP,
cyclic nucleotide, regulation, auto-inhibition, CDC25
homology domain; 2.7A {Mus musculus}
Length = 999
Score = 29.8 bits (66), Expect = 2.5
Identities = 14/87 (16%), Positives = 24/87 (27%)
Query: 105 ISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC 164
+ + NH + P I + + +T E I LV FE + +
Sbjct: 888 MDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTAR 947
Query: 165 PLKELCEVSHQHGALTFVDEVHAVGLY 191
++ A V Y
Sbjct: 948 TVRYYRSQPFNPDAAQANKNHQDVRSY 974
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Length = 451
Score = 29.5 bits (67), Expect = 2.7
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 28/135 (20%)
Query: 278 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM-------DIISGTLGKA 330
L L + ++ + DEV G R G + D+I K
Sbjct: 250 LPTLLDWCRKNDVVFIADEVQ---------TGFA-RTGAMFACEHEGIDPDLI--VTAKG 297
Query: 331 FGN---IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAK 387
+ + G +D+ +G T P A A I + EG+ RA+
Sbjct: 298 IAGGLPLSA-VTGRAEIMDSPH--VSGLGGTYGGNPIACAAALATIETI-ESEGLVARAQ 353
Query: 388 HQDIVAYLRNELIQI 402
+ +++ L ++
Sbjct: 354 QIE--KIMKDRLGRL 366
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent
ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens}
SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A*
2can_A*
Length = 439
Score = 29.5 bits (67), Expect = 3.0
Identities = 57/282 (20%), Positives = 94/282 (33%), Gaps = 91/282 (32%)
Query: 241 RHNDVNHLTQVLENMDVKIPKLVAF--ETVHSMTGAICP-------LKELCEVSHQHGAL 291
+ND+ L + L++ P + AF E + G + P ++ELC +H L
Sbjct: 208 PYNDLPALERALQD-----PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCT---RHQVL 259
Query: 292 TFVDEVHAVGLYGEHGAGIGERDGQL----HNM---DIISGTLGKAFGNIGGYIVG---- 340
DE+ G+ R G+ + DI+ LGKA G Y V
Sbjct: 260 FIADEIQ---------TGLA-RTGRWLAVDYENVRPDIV--LLGKALSG-GLYPVSAVLC 306
Query: 341 TKNFIDTIRSYAAGFIFTTSLP----------PTVLAGAREAIRILSSQEGVELRAKHQD 390
+ + TI+ P P A A+ +L +E + A
Sbjct: 307 DDDIMLTIK------------PGEHGSTYGGNPLGCRVAIAALEVL-EEENLAENADKLG 353
Query: 391 IVAYLRNELIQIGFPVEHTPSHI-----------IPIKIGNPALNTKICDMLLKEKGHYV 439
LRNEL+++ V + I IK K+C + L++ G
Sbjct: 354 --IILRNELMKLPSDV------VTAVRGKGLLNAIVIKETKDWDAWKVC-LRLRDNGLLA 404
Query: 440 QPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481
P + IR AP + + + + + S
Sbjct: 405 -------KPTHGDIIRFAPPLVIKEDELRESIEIINKTILSF 439
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine
sulfhydrase, structural genomic structural
genomics/proteomics initiative; HET: PLP; 2.60A {Thermus
thermophilus} SCOP: c.67.1.3
Length = 421
Score = 29.4 bits (67), Expect = 3.3
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 20/92 (21%)
Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG----EHGAGIGERDGQ 316
+ E++ + I L+ L + + + G VD +G Y GA
Sbjct: 146 RAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGA-------- 197
Query: 317 LHNMDIISGTLGKAFG----NIGGYIVGTKNF 344
+++ +L K G I G IV NF
Sbjct: 198 ----ALVTHSLTKWVGGHGAVIAGAIVDGGNF 225
Score = 29.0 bits (66), Expect = 3.6
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 149 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG----EHGAGI 198
+ E++ + I L+ L + + + G VD +G Y GA +
Sbjct: 146 RAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAAL 199
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics,
niaid, national institute of allergy AN infectious
diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Length = 453
Score = 29.1 bits (66), Expect = 3.9
Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 28/135 (20%)
Query: 278 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM-------DIISGTLGKA 330
L L + ++G + DEV G R G DI+ T+ K
Sbjct: 248 LATLTAWASENGVVFIADEVQ---------TGFA-RTGAWFASEHEGIVPDIV--TMAKG 295
Query: 331 FGN---IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAK 387
+ + G +D + A G T P A A A+ ++ + + RA+
Sbjct: 296 IAGGMPLSA-VTGRAELMDAVY--AGGLGGTYGGNPVTCAAAVAALGVM-RELDLPARAR 351
Query: 388 HQDIVAYLRNELIQI 402
+ A + + L +
Sbjct: 352 AIE--ASVTSRLSAL 364
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory
sulfite reductase, gamma subunit, DSVC, PSI, protein
structure initiative; NMR {Allochromatium vinosum}
Length = 132
Score = 27.8 bits (62), Expect = 3.9
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 370 REAIRILSSQEGVELRAKHQDIVAYLRNE 398
+++ Q+ +EL +H DI+ +LR
Sbjct: 48 PGVADVMAKQDNLELTEEHWDIINFLREY 76
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC,
malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4
PDB: 3lg0_A 3ntj_A
Length = 433
Score = 29.1 bits (66), Expect = 4.1
Identities = 58/269 (21%), Positives = 101/269 (37%), Gaps = 66/269 (24%)
Query: 243 NDVNHLTQVLENMDVKIPKLVAF--ETVHSMTGAICP-------LKELCEVSHQHGALTF 293
+D+ L + L++ P + AF E + G I P + ++C+ ++ L
Sbjct: 199 DDLEALEEELKD-----PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICK---KYNVLFV 250
Query: 294 VDEVHAVGLYGEHGAGIGERDGQL----HNM---DIISGTLGKAFGNIGGY----IVGTK 342
DEV G+G R G+L H D+I LGKA G Y ++
Sbjct: 251 ADEVQ---------TGLG-RTGKLLCVHHYNVKPDVI--LLGKALSG-GHYPISAVLAND 297
Query: 343 NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI 402
+ + I+ G + + P + EA+ +L E + A+ L +
Sbjct: 298 DIMLVIKPGEHGSTYGGN--PLAASICVEALNVL-INEKLCENAEKLG--GPFLENLKRE 352
Query: 403 GFPVEHTPSH--------IIPIKIGNPALN-TKICDMLLKEKGHYVQPINYPTVPVGEEK 453
++ + + I+ N +N IC + LKE G T V ++
Sbjct: 353 ---LKDSKIVRDVRGKGLLCAIEFKNELVNVLDIC-LKLKENG-------LITRDVHDKT 401
Query: 454 IRLAPTPFHTREMIDKFVTDLLAVWKSLD 482
IRL P T+E +D+ ++ K D
Sbjct: 402 IRLTPPLCITKEQLDECTEIIVKTVKFFD 430
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 28.4 bits (64), Expect = 6.2
Identities = 42/267 (15%), Positives = 72/267 (26%), Gaps = 77/267 (28%)
Query: 237 KIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL---CEVSHQHGALTF 293
++ + H+ PKLV + G +EL +HG F
Sbjct: 133 SALHENRSE-HMVI---------PKLVYISNTTEV-GTQYTKQELEDISASCKEHGLYLF 181
Query: 294 VDEVHAVGLYGEHGA-----------GIGERDGQLHNMDIIS--GTLGKAFGNIGGYIV- 339
+D GA + D D+ T KA G G ++
Sbjct: 182 LD-----------GARLASALSSPVNDLTLADIARL-TDMFYIGAT--KAGGMFGEALII 227
Query: 340 GTKNFIDTIRSY--AAGFIFTTSLPPTVLAGAREAIRILSSQ------EGVELR-AKHQD 390
R G A + +L Q + + H +
Sbjct: 228 LNDALKPNARHLIKQRG------------ALMAKG-WLLGIQFEVLMKDNLFFELGAHSN 274
Query: 391 IVA-YLRNELIQIGFPVEH-TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP 448
+A L+ L G + + S+ + + N + L +
Sbjct: 275 KMAAILKAGLEACGIRLAWPSASNQLFPILENTMIAE------LNNDFDM---YTVEPLK 325
Query: 449 VGEEKIRLAPTPFHT-REMIDKFVTDL 474
G +RL T + T + +FV L
Sbjct: 326 DGTCIMRLC-TSWATEEKECHRFVEVL 351
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural
genomics, center for structural genomics O infectious
diseases; 1.80A {Campylobacter jejuni subsp}
Length = 395
Score = 27.9 bits (63), Expect = 7.8
Identities = 40/232 (17%), Positives = 66/232 (28%), Gaps = 69/232 (29%)
Query: 278 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQL--HNM-----DIISGTLGKA 330
L++LC+ + L DE+ G+G R G+ + DI+ T KA
Sbjct: 205 LRKLCD---EKDILLIADEIQ---------CGMG-RSGKFFAYEHAQILPDIM--TSAKA 249
Query: 331 FGN---IGGYIVGTKNFIDTIRSYAAGFIFTTSLP----------PTVLAGAREAIRILS 377
G +G +++ K A P V AG I
Sbjct: 250 LGCGLSVGAFVINQK---------VASNSLE---AGDHGSTYGGNPLVCAGVNAVFEIFK 297
Query: 378 SQ---EGVELRAKHQDIVAYLRNELIQIGFPVEHTPSH-----IIPIKIGNPALNTKICD 429
+ E V YL L ++ + + + + K+
Sbjct: 298 EEKILENVNKLT------PYLEQSLDELINEFDFCKKRKGLGFMQGLSLDKSVKVAKVIQ 351
Query: 430 MLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481
+ + GE +R P +E ID+ L KS
Sbjct: 352 KCQENA--------LLLISCGENDLRFLPPLILQKEHIDEMSEKLRKALKSF 395
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A
{Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1
PDB: 1ord_A*
Length = 730
Score = 28.1 bits (62), Expect = 8.8
Identities = 19/146 (13%), Positives = 39/146 (26%), Gaps = 15/146 (10%)
Query: 273 GAICPLKELCEVSHQHGALTFVDEVHAVGLY-----GEHGAGIGERDGQLHNMDIISGTL 327
G I E+ + D + + G I+ ++
Sbjct: 294 GTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSV 353
Query: 328 GKAFGNI---------GGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGARE-AIRILS 377
K +I G + D + +F ++ P + A + +
Sbjct: 354 HKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQE 413
Query: 378 SQEGVELRAKHQDIVAYLRNELIQIG 403
+ G +L R +LI+ G
Sbjct: 414 GEAGRKLWHDLLITTIEARKKLIKAG 439
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster
synthesis, C-S BE transferase; HET: PLP; 2.00A
{Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Length = 384
Score = 27.8 bits (63), Expect = 8.9
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 160 TGAICPLKELCEVSHQHGALTF--VDEVHAVG 189
G I P++++ + + T VD V +G
Sbjct: 152 VGTIQPVEDVTRIVKKKNKETLVHVDAVQTIG 183
Score = 27.8 bits (63), Expect = 8.9
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 272 TGAICPLKELCEVSHQHGALTF--VDEVHAVG 301
G I P++++ + + T VD V +G
Sbjct: 152 VGTIQPVEDVTRIVKKKNKETLVHVDAVQTIG 183
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum
pernix} PDB: 2zsl_A* 2zsm_A*
Length = 434
Score = 27.9 bits (63), Expect = 9.0
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 161 GAICP----LKELCEVSHQHGALTFVDEV 185
G I P L L +S + GAL +DEV
Sbjct: 217 GVIPPRREFLAALQRLSRESGALLILDEV 245
Score = 27.9 bits (63), Expect = 9.0
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 273 GAICP----LKELCEVSHQHGALTFVDEV 297
G I P L L +S + GAL +DEV
Sbjct: 217 GVIPPRREFLAALQRLSRESGALLILDEV 245
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics,
center for structural genomics of infec diseases, csgid,
porphyrin biosynthesis; 2.00A {Yersinia pestis}
Length = 429
Score = 27.8 bits (63), Expect = 9.2
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 166 LKELCEVSHQHGALTFVDEV 185
L L + + GAL +DEV
Sbjct: 223 LPGLRALCDEFGALLIIDEV 242
Score = 27.8 bits (63), Expect = 9.2
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 278 LKELCEVSHQHGALTFVDEV 297
L L + + GAL +DEV
Sbjct: 223 LPGLRALCDEFGALLIIDEV 242
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of
cofactors, prosthetic groups, and carriers, csgid,
cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus
anthracis str} PDB: 3bs8_A*
Length = 429
Score = 27.8 bits (63), Expect = 9.8
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 161 GAICP----LKELCEVSHQHGALTFVDEV 185
G + P L+ L EV+ Q+GAL DEV
Sbjct: 214 GVVPPQPGFLEGLREVTEQNGALLIFDEV 242
Score = 27.8 bits (63), Expect = 9.8
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 273 GAICP----LKELCEVSHQHGALTFVDEV 297
G + P L+ L EV+ Q+GAL DEV
Sbjct: 214 GVVPPQPGFLEGLREVTEQNGALLIFDEV 242
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.409
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,941,590
Number of extensions: 503210
Number of successful extensions: 1220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1161
Number of HSP's successfully gapped: 172
Length of query: 514
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 416
Effective length of database: 3,965,535
Effective search space: 1649662560
Effective search space used: 1649662560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)