RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16848
(514 letters)
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
{Escherichia coli [TaxId: 562]}
Length = 401
Score = 193 bits (491), Expect = 3e-57
Identities = 85/264 (32%), Positives = 134/264 (50%), Gaps = 6/264 (2%)
Query: 223 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLEN--MDVKIPKLVAFETVHSMTGAICPLKE 280
HAS+I G+R A + Y +ND+ L L+ L+A + V SM G I LK
Sbjct: 139 HASIIDGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKG 198
Query: 281 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF-GNIGGYIV 339
+C+++ ++ AL VD+ HAVG GE+G G E + +DII+GTLGKA G GGY
Sbjct: 199 VCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTA 258
Query: 340 GTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNEL 399
K ++ +R + ++F+ SL P ++A + + + + + G ELR + R ++
Sbjct: 259 ARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEM--VEAGSELRDRLWANARQFREQM 316
Query: 400 IQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPT 459
GF + IIP+ +G+ + K L ++G YV YP VP G+ +IR +
Sbjct: 317 SAAGFTLAGADHAIIPVMLGDAVVAQKFARELQ-KEGIYVTGFFYPVVPKGQARIRTQMS 375
Query: 460 PFHTREMIDKFVTDLLAVWKSLDL 483
HT E I + V + K L +
Sbjct: 376 AAHTPEQITRAVEAFTRIGKQLGV 399
Score = 116 bits (291), Expect = 4e-29
Identities = 62/192 (32%), Positives = 92/192 (47%), Gaps = 4/192 (2%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
++ G G R I G H++LE+ +A E ++++SC+ AN TL
Sbjct: 70 AGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAE 129
Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLEN--MDVKIPKLVAFETVH 157
ISDA NHAS+I G+R A + Y +ND+ L L+ L+A + V
Sbjct: 130 D--AIISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVF 187
Query: 158 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN 217
SM G I LK +C+++ ++ AL VD+ HAVG GE+G G E + +DII+GTL
Sbjct: 188 SMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGK 247
Query: 218 PEVAIHASMIQG 229
Sbjct: 248 ALGGASGGYTAA 259
>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter
capsulatus [TaxId: 1061]}
Length = 396
Score = 178 bits (452), Expect = 1e-51
Identities = 126/271 (46%), Positives = 179/271 (66%)
Query: 208 MDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFET 267
+ G ++ + HASMI+GI+ ++ PK I+RHNDV HL +++ D PKL+AFE+
Sbjct: 126 RVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFES 185
Query: 268 VHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 327
V+SM G P+KE+C+++ + GALT++DEVHAVG+YG GAG+ ERDG +H +DI +GTL
Sbjct: 186 VYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTL 245
Query: 328 GKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAK 387
KA+G GGYI + +D +RSYA GFIF+TSLPP + AGA+ +I L + EG +LR
Sbjct: 246 AKAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDA 305
Query: 388 HQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTV 447
Q L+ L +G P+ SHI+P+ IG+P + DMLL + G YVQPIN+PTV
Sbjct: 306 QQMHAKVLKMRLKALGMPIIDHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTV 365
Query: 448 PVGEEKIRLAPTPFHTREMIDKFVTDLLAVW 478
P G E++R P+P H + ID V + +W
Sbjct: 366 PRGTERLRFTPSPVHDLKQIDGLVHAMDLLW 396
Score = 103 bits (256), Expect = 2e-24
Identities = 100/176 (56%), Positives = 134/176 (76%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
EALE G G+GGTRNISG + +H +LE ++A LHQKEA LVF+S Y AND+TL TL +
Sbjct: 70 EALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLF 129
Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159
PGL SD+ NHASMI+GI+ ++ PK I+RHNDV HL +++ D PKL+AFE+V+SM
Sbjct: 130 PGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSM 189
Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215
G P+KE+C+++ + GALT++DEVHAVG+YG GAG+ ERDG +H +DI +GTL
Sbjct: 190 DGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTL 245
>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase
(8-amino-7-oxonanoate synthase, AONS) {Escherichia coli
[TaxId: 562]}
Length = 383
Score = 163 bits (414), Expect = 2e-46
Identities = 71/250 (28%), Positives = 122/250 (48%), Gaps = 4/250 (1%)
Query: 222 IHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL 281
HAS+++ S + + HNDV HL ++L + ++V E V SM G PL E+
Sbjct: 131 SHASLLEAASLSPSQLRRFAHNDVTHLARLLASPC-PGQQMVVTEGVFSMDGDSAPLAEI 189
Query: 282 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGT 341
+V+ QH VD+ H G+ GE G G +++ T GK FG G ++ +
Sbjct: 190 QQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQK--VKPELLVVTFGKGFGVSGAAVLCS 247
Query: 342 KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ 401
D + +A I++TS+PP R ++ ++ S EG R K ++ R +
Sbjct: 248 STVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQD 307
Query: 402 IGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF 461
+ F + + S I P+ +G+ + ++ + L ++G +V I PTVP G ++RL T
Sbjct: 308 LPFTLADSCSAIQPLIVGDNSRALQLAEKLR-QQGCWVTAIRPPTVPAGTARLRLTLTAA 366
Query: 462 HTREMIDKFV 471
H + ID+ +
Sbjct: 367 HEMQDIDRLL 376
Score = 100 bits (250), Expect = 9e-24
Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 3/172 (1%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
+ E+FG G+GG+ ++SG S+ H+ LEE++A+ L+F S + AN + + +
Sbjct: 63 QGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMA-- 120
Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159
+D +HAS+++ S + + HNDV HL ++L + ++V E V SM
Sbjct: 121 KEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPC-PGQQMVVTEGVFSM 179
Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDII 211
G PL E+ +V+ QH VD+ H G+ GE G G + ++
Sbjct: 180 DGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVV 231
>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 366
Score = 78.4 bits (192), Expect = 2e-16
Identities = 42/282 (14%), Positives = 96/282 (34%), Gaps = 27/282 (9%)
Query: 215 LVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGA 274
PE+ H S+ + + + ++ + + + ++L +D ++ T+
Sbjct: 95 HYLPELPGHPSIERSCKI-----VNAKYFESDKVGEILNKIDKDTLVIITGSTMDLKVIE 149
Query: 275 ICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI 334
+ K++ + A+ FVD+ + + G +++ T G
Sbjct: 150 LENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADL---VVTSTDKLMEGPR 206
Query: 335 GGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAY 394
GG + G K +D I F P +LAG A++ + + + + ++
Sbjct: 207 GGLLAGKKELVDKIYIEG--TKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLS 264
Query: 395 LRNELIQIG-------------FPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQP 441
+L + P + N +I LLK G +
Sbjct: 265 KIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYG--IIT 322
Query: 442 INYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL 483
I +P + +R+ T + D ++ A+ +S+ +
Sbjct: 323 ITVAGMPGASKSLRIDLTSRDAERIDDNYIIK--AIVESIKM 362
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 75.3 bits (184), Expect = 3e-15
Identities = 36/358 (10%), Positives = 98/358 (27%), Gaps = 22/358 (6%)
Query: 129 RHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAV 188
+ H N+ PK ++++T I L+ + + +
Sbjct: 84 LSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKI--LESFFKQLGLNVHAIATPISTGM 141
Query: 189 GLYGEHGAGIGERDGQLHNMDIISGTLVNPEV--AIHASMIQGIRNSSAPKIIYRHNDVN 246
+ + + + +I + A+ + + + V
Sbjct: 142 SIS----LCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVE 197
Query: 247 HLTQVL-ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGE 305
+ + + +++ V + E+ ++ + ++ +A+
Sbjct: 198 DIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYY 257
Query: 306 HGAGIGERDGQLHNMDIISGTLGKAFG-NIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPT 364
+ + +D + + K IGG +V + + + ++ P
Sbjct: 258 LE---KLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRASATPVV 314
Query: 365 VLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALN 424
+ ++ + E V+ + + ++ L N+L + I I +
Sbjct: 315 NTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDP 374
Query: 425 TKICDMLLKEKGHYVQPINYPTVPVG--------EEKIRLAPTPFHTREMIDKFVTDL 474
+I L T G + I + E I V+ L
Sbjct: 375 VEIAAK-LYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKL 431
Score = 51.8 bits (123), Expect = 1e-07
Identities = 22/208 (10%), Positives = 51/208 (24%), Gaps = 15/208 (7%)
Query: 56 SGNSLFHEKLEEDVAKL--HQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHAS 113
S K+ E K A S ++ L K I +H S
Sbjct: 109 SIMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKS 168
Query: 114 MIQGIRNSSAPKIIYR--------HNDVNHLTQVL-ENMDVKIPKLVAFETVHSMTGAIC 164
I+ + + + V + + + +++ V
Sbjct: 169 PIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSD 228
Query: 165 PLKELCEVSHQHGALTFVDEVHAVGLY----GEHGAGIGERDGQLHNMDIISGTLVNPEV 220
+ E+ ++ + ++ +A+ A D + + D T + +
Sbjct: 229 DIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGL 288
Query: 221 AIHASMIQGIRNSSAPKIIYRHNDVNHL 248
S + V +
Sbjct: 289 VYSTDAEFIKEISLSYPGRASATPVVNT 316
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 75.0 bits (183), Expect = 5e-15
Identities = 36/300 (12%), Positives = 81/300 (27%), Gaps = 37/300 (12%)
Query: 220 VAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP-- 277
+ I+ ++ + D+ L + +E + + + G
Sbjct: 144 CTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSL 203
Query: 278 --LKELCEVSHQHGALTFVDEVHAVGL--------YGEHGAGIGERDGQL-HNMDIISGT 326
LK + ++ ++ +D I + + D+++ +
Sbjct: 204 ANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMS 263
Query: 327 LGKAFGNIGGYIVGTKN-----FIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEG 381
K G ++ K+ R+ + L
Sbjct: 264 AKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMN 323
Query: 382 VELRAKHQDIVAYLRNELIQIGFPVEHTPSH--------IIPIKIGNPALNTKICDMLLK 433
++ A V YL + L +IG + H ++P + + L K
Sbjct: 324 LDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYK 383
Query: 434 EKG----------HYVQPINYPTVPVGEEKIRLA-PTPFHTREMIDKFVTDLLAVWKSLD 482
G P +P E +RL P +T+ +D + V ++
Sbjct: 384 VAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAA 443
Score = 48.0 bits (113), Expect = 2e-06
Identities = 19/208 (9%), Positives = 51/208 (24%), Gaps = 36/208 (17%)
Query: 43 EKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKM---- 98
G SG+ ++ L E V + + + A + L K
Sbjct: 58 SMQAAMMRGDEAFSGSRSYY-ALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQE 116
Query: 99 --IPGLHYI----------------SDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVL 140
+ + + I+ ++ + D+ L + +
Sbjct: 117 KGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGI 176
Query: 141 ENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGL------ 190
E + + + G LK + ++ ++ +D
Sbjct: 177 EEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQ 236
Query: 191 --YGEHGAGIGERDGQL-HNMDIISGTL 215
I + + D+++ +
Sbjct: 237 REAEYKDWTIEQITRETYKYADMLAMSA 264
>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Thermotoga maritima [TaxId: 2336]}
Length = 343
Score = 68.7 bits (166), Expect = 3e-13
Identities = 36/248 (14%), Positives = 81/248 (32%), Gaps = 18/248 (7%)
Query: 240 YRHNDVNHLTQVLENMDVKIPK--LVAFETVHSMTGAIC----PLKELCEVSHQHGALTF 293
D + + + + ++ P+ L+A E H+ +G +KE+C ++ +HG
Sbjct: 107 NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVH 166
Query: 294 VDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAA 353
+D G + E G ++ +G +VG ++FI+ R
Sbjct: 167 IDGARIFNASIASGVPVKEYAGYADSVMFC--LSKGLCAPVGSVVVGDRDFIERARKARK 224
Query: 354 GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHI 413
+ A A+ L+ + I E +++
Sbjct: 225 MLGGGMRQAGVLAAAGIIALTK---MVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNM 281
Query: 414 IPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTD 473
+ ++ N +N L+ G ++ IRL +R I++ +
Sbjct: 282 VILRTDNLKVNAHGFIEALRNSGVLANAVSDTE-------IRLVTHKDVSRNDIEEALNI 334
Query: 474 LLAVWKSL 481
+++
Sbjct: 335 FEKLFRKF 342
Score = 59.4 bits (142), Expect = 3e-10
Identities = 28/163 (17%), Positives = 58/163 (35%), Gaps = 11/163 (6%)
Query: 57 GNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQ 116
G +LE A+ KEA L S + N ++ + + +D+ +
Sbjct: 31 GEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVG 90
Query: 117 GIRNSSAPKII-----YRHNDVNHLTQVLENMDVKIPK--LVAFETVHSMTGAIC----P 165
+ S D + + + + ++ P+ L+A E H+ +G
Sbjct: 91 AMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLEN 150
Query: 166 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM 208
+KE+C ++ +HG +D G + E G ++
Sbjct: 151 IKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSV 193
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS)
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 364
Score = 68.3 bits (165), Expect = 5e-13
Identities = 32/278 (11%), Positives = 71/278 (25%), Gaps = 17/278 (6%)
Query: 40 EALEKFGTGAGGTRNISGNSL-------FHEKLEEDVAKLHQKEAGLVFTSCYVANDSTL 92
+AL ++G G + L H+ + + K + V A + +
Sbjct: 20 QALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVM 79
Query: 93 FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV------- 145
+L K + D H S + + D EN
Sbjct: 80 HSLAK--KDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKK 137
Query: 146 -KIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQ 204
L G + +K++ +V ++ V+ +A+G IG
Sbjct: 138 RGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIV 197
Query: 205 LHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVA 264
++ + + + + + S + + + +
Sbjct: 198 GSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHV 257
Query: 265 FETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL 302
E + + + + G D H L
Sbjct: 258 RERIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDL 295
Score = 63.7 bits (153), Expect = 2e-11
Identities = 22/227 (9%), Positives = 67/227 (29%), Gaps = 13/227 (5%)
Query: 260 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHN 319
L G + +K++ +V ++ V+ +A+G IG
Sbjct: 141 VVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSG 200
Query: 320 MDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSS- 378
++ + G + + + + + + + A I +++S
Sbjct: 201 HKSMAASGP------IGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASF 254
Query: 379 ---QEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEK 435
+E ++ + + E+ ++G H + + + +I +
Sbjct: 255 PHVRERIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAEVLYEISKKAKGGR 314
Query: 436 G---HYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK 479
++ + G + T + E +D + + +
Sbjct: 315 FFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIE 361
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 61.5 bits (148), Expect = 8e-11
Identities = 30/292 (10%), Positives = 82/292 (28%), Gaps = 35/292 (11%)
Query: 223 HASMIQGIRNSSAPKIIYR--------HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGA 274
S + + + ++ D+ + ++ + + + T
Sbjct: 150 QKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRV 209
Query: 275 ICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG-N 333
L+EL + + V+ + + + ++ ++ +D +L K F
Sbjct: 210 PDRLEELAVICANYDIPHVVNNAYGLQSSK--CMHLIQQGARVGRIDAFVQSLDKNFMVP 267
Query: 334 IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKH-QDIV 392
+GG I+ N ++ P + ++ ++ ++ R + +
Sbjct: 268 VGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLS 327
Query: 393 AYLRNELIQIGFPVEHTPSH-------IIPIKIGNPALNTKICDMLLKEK---------- 435
L+ + TP + + I + T++ ML +
Sbjct: 328 TQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLG 387
Query: 436 ------GHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481
GH + + A + +D F+ L +
Sbjct: 388 NVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIV 439
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 61.0 bits (146), Expect = 9e-11
Identities = 21/258 (8%), Positives = 55/258 (21%), Gaps = 18/258 (6%)
Query: 223 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVA------FETVHSMTGAIC 276
D+ L + + T +
Sbjct: 96 APEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLD 155
Query: 277 PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGG 336
++ + +V +D G E + + G
Sbjct: 156 EIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEA 215
Query: 337 YIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLR 396
++ + + +S + A + +A
Sbjct: 216 IVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGL 275
Query: 397 NELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRL 456
L + + T ++I+ ++ + + L + G G +R
Sbjct: 276 EGLGGVEV-LGGTEANILFCRLDSAMI------DALLKAGFGF-----YHDRWGPNVVRF 323
Query: 457 APTPFHTREMIDKFVTDL 474
+ T E +D + +
Sbjct: 324 VTSFATTAEDVDHLLNQV 341
Score = 51.4 bits (121), Expect = 1e-07
Identities = 17/188 (9%), Positives = 42/188 (22%), Gaps = 13/188 (6%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFT-SCYVANDSTLFTLGK- 97
E + + G G +++ ++ +++ + + AN L +
Sbjct: 18 EVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTPP 77
Query: 98 -----MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVA 152
P H +D D+ L + +
Sbjct: 78 WGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQP 137
Query: 153 ------FETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLH 206
T + ++ + +V +D G E +
Sbjct: 138 ACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAG 197
Query: 207 NMDIISGT 214
+ G
Sbjct: 198 VDALSFGA 205
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 55.2 bits (132), Expect = 9e-09
Identities = 40/227 (17%), Positives = 68/227 (29%), Gaps = 19/227 (8%)
Query: 263 VAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLH 318
E + G I P L+ + ++ ++ L DEV GL +
Sbjct: 190 FIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-GLGRTGKLLCVHH----Y 244
Query: 319 NMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSS 378
N+ LGKA I D + G +T + A +
Sbjct: 245 NVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLI 304
Query: 379 QEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSH---IIPIKIGNPALNTKICDMLLKEK 435
E + A+ + + + I+ N +N + LKE
Sbjct: 305 NEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKEN 364
Query: 436 GHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD 482
G V ++ IRL P T+E +D+ ++ K D
Sbjct: 365 GLIT-------RDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKFFD 404
Score = 34.0 bits (77), Expect = 0.039
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 5/57 (8%)
Query: 151 VAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDG 203
E + G I P L+ + ++ ++ L DEV GL
Sbjct: 190 FIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-GLGRTGKLLCVHHYN 245
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 52.6 bits (125), Expect = 6e-08
Identities = 40/277 (14%), Positives = 78/277 (28%), Gaps = 36/277 (12%)
Query: 242 HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEV 297
D+ L + + + + G LKE+ E++ QHG +D
Sbjct: 165 DFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSA 224
Query: 298 HAVGLY--------GEHGAGIGERDGQL-HNMDIISGTLGKAFGNIGGYIVGTKNFIDTI 348
A I E + D ++ + K G +V ++ +
Sbjct: 225 RFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIF 284
Query: 349 RSYAAGFI--FTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ-DIVAYLRNELIQIGFP 405
+ + A+ + E ++ V YL + L + G P
Sbjct: 285 TLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIP 344
Query: 406 -VEHTPSH--------IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVG------ 450
T H ++P G+ + + L E G I +
Sbjct: 345 IQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQ 404
Query: 451 ----EEKIRLA-PTPFHTREMIDKFVTDLLAVWKSLD 482
E +RL +T + +D L+ + +
Sbjct: 405 KHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA 441
Score = 41.5 bits (96), Expect = 2e-04
Identities = 25/194 (12%), Positives = 47/194 (24%), Gaps = 28/194 (14%)
Query: 57 GNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKM-----------IPGLHYI 105
S + L++ +L + + A + L K +
Sbjct: 72 AGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHF 131
Query: 106 SDAGNHASMIQGIRNSS---------APKIIYRHNDVNHLTQVLENMDVKIPKLVAFETV 156
H + + D+ L + + +
Sbjct: 132 DTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVT 191
Query: 157 HSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS 212
+ G LKE+ E++ QHG +D I RD + N I
Sbjct: 192 CNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENA----YFIKARDPKYKNATIKE 247
Query: 213 GTLVNPEVAIHASM 226
+ A +M
Sbjct: 248 VIFDMYKYADALTM 261
>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli
[TaxId: 562]}
Length = 391
Score = 47.2 bits (111), Expect = 2e-06
Identities = 37/244 (15%), Positives = 71/244 (29%), Gaps = 30/244 (12%)
Query: 260 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHN 319
LV+ V++ G + + + E+ G + VD +VG D
Sbjct: 144 TILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKL--------PIDLSQLK 195
Query: 320 MDIISGTLGKAFGNIG-GYIVGTKNFIDTIRSYAAGFI----FTTSLPPTVLAGAREAIR 374
+D++S + K +G G G + + I + G + P
Sbjct: 196 VDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAY 255
Query: 375 ILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKIC-DMLLK 433
++ +E + + + L N + I + I N + N +++
Sbjct: 256 RIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMA 315
Query: 434 EKG-------HYVQPINYP---------TVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV 477
K P + IR + F T E ID + +
Sbjct: 316 LKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKS 375
Query: 478 WKSL 481
L
Sbjct: 376 IGRL 379
Score = 41.1 bits (95), Expect = 3e-04
Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 8/135 (5%)
Query: 63 EKLEEDVAKL-HQKEAGLVFTSCYVANDSTLFTLGKMI---PGLHYISDAGNHASMIQGI 118
+ +A L +VFTS +D+ G H I+ H +++
Sbjct: 51 DIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTC 110
Query: 119 RNSSAPKIIYRHNDVNHLTQV-LENMDVKI---PKLVAFETVHSMTGAICPLKELCEVSH 174
R + + L+ ++ + LV+ V++ G + + + E+
Sbjct: 111 RQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCR 170
Query: 175 QHGALTFVDEVHAVG 189
G + VD +VG
Sbjct: 171 ARGIIYHVDATQSVG 185
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Leishmania major [TaxId: 5664]}
Length = 340
Score = 44.9 bits (104), Expect = 1e-05
Identities = 23/240 (9%), Positives = 54/240 (22%), Gaps = 10/240 (4%)
Query: 236 PKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD 295
+ + + + + + G +EL ++S
Sbjct: 107 CPDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYL 166
Query: 296 EVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGF 355
+ L + + + +G +
Sbjct: 167 FLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLI 226
Query: 356 IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTP-SHII 414
+L + ++ EL A + A L+ L G + S+ +
Sbjct: 227 KQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLAWPSASNQL 286
Query: 415 PIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDL 474
+ N + L + G +RL + + +FV L
Sbjct: 287 FPILENTMIAE------LNNDFDM---YTVEPLKDGTCIMRLCTSWATEEKECHRFVEVL 337
Score = 31.0 bits (68), Expect = 0.31
Identities = 6/74 (8%), Positives = 15/74 (20%), Gaps = 2/74 (2%)
Query: 40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVF--TSCYVANDSTLFTLGK 97
+ L+ G K + +L ++ V + N +
Sbjct: 15 KILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALR 74
Query: 98 MIPGLHYISDAGNH 111
+
Sbjct: 75 PWEAVIATQLGHIS 88
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 44.5 bits (104), Expect = 2e-05
Identities = 44/285 (15%), Positives = 76/285 (26%), Gaps = 30/285 (10%)
Query: 224 ASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAI------CP 277
+ + P + +++E D + V + TG
Sbjct: 167 FARYWDVELREIP--MRPGQLFMDPKRMIEACD-ENTIGVVPTFGVTYTGNYEFPQPLHD 223
Query: 278 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG---NI 334
+ + +D L I D +L + IS + K
Sbjct: 224 ALDKFQADTGIDIDMHIDAASGGFLAPFVAPDI-VWDFRLPRVKSISASGHKFGLAPLGC 282
Query: 335 GGYIVGTKNFIDTIRS----YAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQD 390
G I + + Y G I T ++ + AG A + G E K Q+
Sbjct: 283 GWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQN 342
Query: 391 IVAYLRN------------ELIQIGFPVEHTPSHIIPIKIG-NPALNTKICDMLLKEKGH 437
+ E I G P E P+ +K G +P L+ +G
Sbjct: 343 ASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGW 402
Query: 438 YVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD 482
V +R+ + + + D A K L
Sbjct: 403 QVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLS 447
>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase
{Escherichia coli [TaxId: 562]}
Length = 405
Score = 44.1 bits (103), Expect = 2e-05
Identities = 49/257 (19%), Positives = 94/257 (36%), Gaps = 35/257 (13%)
Query: 252 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIG 311
L + + +L+A V ++ G PL E+ ++HQHGA VD AV +
Sbjct: 156 LPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHH-------- 207
Query: 312 ERDGQLHNMDIISGTLGKAFGNIG--------------------GYIVGTKNFIDTIRSY 351
D Q + D + K +G G G ++ T + +
Sbjct: 208 PVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWT 267
Query: 352 AAGFIFTTSLPPTVLA-GAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTP 410
A + F P T G A+ +S+ + Q+++ Y ++L + + P
Sbjct: 268 KAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGP 327
Query: 411 SHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEK-----IRLAPTPFHTR 464
+ + + N + L G V+ ++ +P+ R + ++T
Sbjct: 328 QNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTH 387
Query: 465 EMIDKFVTDLLAVWKSL 481
E +D+ VT L + + L
Sbjct: 388 EEVDRLVTGLQRIHRLL 404
Score = 35.7 bits (81), Expect = 0.012
Identities = 30/150 (20%), Positives = 45/150 (30%), Gaps = 8/150 (5%)
Query: 140 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIG 199
L + + +L+A V ++ G PL E+ ++HQHGA VD AV +
Sbjct: 156 LPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHH-------- 207
Query: 200 ERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKI 259
D Q + D + ++ + T L
Sbjct: 208 PVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWT 267
Query: 260 PKLVAFETVHSMTGAICPLKELCEVSHQHG 289
FE TG I L E G
Sbjct: 268 KAPWRFEAGTPNTGGIIGLGAALEYVSALG 297
>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus
thermophilus [TaxId: 274]}
Length = 382
Score = 43.2 bits (101), Expect = 6e-05
Identities = 44/256 (17%), Positives = 78/256 (30%), Gaps = 21/256 (8%)
Query: 203 GQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD 256
G + + +++P EV + + S + +R + + E +
Sbjct: 99 GGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVR 158
Query: 257 VKI---PKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGI 310
I K + + ++ TGA+ P L+ L ++ +H DE++ LY
Sbjct: 159 RAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSP 218
Query: 311 GERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLA 367
G + KAF G GY G K I + S + +
Sbjct: 219 GR---VAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWAT 275
Query: 368 GAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSH--IIPIKIGNPALNT 425
+ S R ++ L L +G PS + + A +
Sbjct: 276 LEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKA-VRPSGAFYVLMDTSPIAPDE 334
Query: 426 KICDMLLKEKGHYVQP 441
L E G V P
Sbjct: 335 VRAAERLLEAGVAVVP 350
Score = 27.8 bits (61), Expect = 3.4
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 140 LENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY 191
+ K + + ++ TGA+ P L+ L ++ +H DE++ LY
Sbjct: 157 VRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLY 211
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 42.9 bits (100), Expect = 6e-05
Identities = 33/241 (13%), Positives = 67/241 (27%), Gaps = 42/241 (17%)
Query: 263 VAFETVHSMTGAIC----PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLH 318
+ E V G ++ L + +HG + DEV G E+
Sbjct: 202 IVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQ-SGAGRTGTLFAMEQ----M 256
Query: 319 NMDIISGTLGKAFGN---IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRI 375
+ T K+ + G G +D + G + + P A E +++
Sbjct: 257 GVAPDLTTFAKSIAGGFPLAGVT-GRAEVMDAVAPGGLGGTYAGN--PIACVAALEVLKV 313
Query: 376 LSSQ--------------EGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNP 421
+ +G+ A+ + +R I + H P +
Sbjct: 314 FEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKP----DA 369
Query: 422 ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481
L +I +KG + +R+ I + + + +
Sbjct: 370 KLTAEIVARAR-DKGLILLS-----CGPYYNVLRILVPLTIEDAQIRQGLE---IISQCF 420
Query: 482 D 482
D
Sbjct: 421 D 421
>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS
{Synechocystis sp. PCC 6803 [TaxId: 1148]}
Length = 408
Score = 42.6 bits (99), Expect = 8e-05
Identities = 44/293 (15%), Positives = 93/293 (31%), Gaps = 22/293 (7%)
Query: 209 DIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETV 268
D I T++ + + + + K + + + + + + KLV +
Sbjct: 113 DEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHI 172
Query: 269 HSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHG-----------AGIGERDGQL 317
+ G + P +E+ +++HQ GA VD + Y +
Sbjct: 173 SNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGI 232
Query: 318 HNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTV-LAGAREAIRIL 376
+ L GG + + F D + F P A+ L
Sbjct: 233 GFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYL 292
Query: 377 SSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICD-----ML 431
+ + ++ YL L QI + P+ + + N +
Sbjct: 293 TDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLHASDVATM 352
Query: 432 LKEKGHYVQPINYPTVPVGEEK-----IRLAPTPFHTREMIDKFVTDLLAVWK 479
+ + G ++ ++ T P+ R + ++T+E ID F+ L A +
Sbjct: 353 VDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIR 405
>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 404
Score = 42.0 bits (98), Expect = 1e-04
Identities = 50/248 (20%), Positives = 86/248 (34%), Gaps = 37/248 (14%)
Query: 238 IIYRHNDVNHLTQVLENMDVKIPKLVAF--ETVHSMTGAICP----LKELCEVSHQHGAL 291
I +ND+ L + L++ P + AF E + G + P L + E+ +H L
Sbjct: 170 DIIPYNDLPALERALQD-----PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVL 224
Query: 292 TFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN---IGGYIVGTKNFIDTI 348
DE+ GL + + DI+ LGKA ++ + + TI
Sbjct: 225 FIADEIQ-TGLARTGRWLAVDYENVRP--DIV--LLGKALSGGLYPVSAVLCDDDIMLTI 279
Query: 349 RSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEH 408
+ + + P A A+ +L + L + LRNEL+++ V
Sbjct: 280 KPGEHFSTYGGN--PLGCRVAIAALEVLEEEN---LAENADKLGIILRNELMKLPSDVVT 334
Query: 409 TPSHI-----IPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHT 463
I IK K+C L + G P + IR AP
Sbjct: 335 AVRGKGLLNAIVIKETKDWDAWKVCLRLR-DNGLLA-------KPTHGDIIRFAPPLVIK 386
Query: 464 REMIDKFV 471
+ + + +
Sbjct: 387 EDELRESI 394
>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas
putida [TaxId: 303]}
Length = 392
Score = 42.1 bits (98), Expect = 1e-04
Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 5/140 (3%)
Query: 62 HEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNS 121
LE +A L EAGL S A STL+T + PG + + + +
Sbjct: 61 LNLLEARMASLEGGEAGLALASGMGAITSTLWT--LLRPGDEVLLGNTLYGCTFAFLHHG 118
Query: 122 SAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTF 181
+ + Q LE +++ FE+ + + + + +++ +HGA
Sbjct: 119 IGEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVV 178
Query: 182 VDEVHAVGLYG---EHGAGI 198
VD + E GA +
Sbjct: 179 VDNTYCTPYLQRPLELGADL 198
>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 380
Score = 40.6 bits (94), Expect = 3e-04
Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 6/140 (4%)
Query: 62 HEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNS 121
+ LE +AKL + + FTS +A S + L K G ++ + + +
Sbjct: 51 RDALESLLAKLDKADRAFCFTS-GMAALSAVTHLIK--NGEEIVAGDDVYGGSDRLLSQV 107
Query: 122 SAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTF 181
+ + KLV E+ + I ++++ E++H GAL
Sbjct: 108 VPRSGVVVKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVL 167
Query: 182 VDEVHAVGLYG---EHGAGI 198
VD + E GA I
Sbjct: 168 VDNSIMSPVLSRPLELGADI 187
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 388
Score = 39.1 bits (90), Expect = 0.001
Identities = 41/237 (17%), Positives = 82/237 (34%), Gaps = 14/237 (5%)
Query: 252 LENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGA 308
L+ + + + + TGA+ L+E+ + +H + DEV+ +Y +
Sbjct: 152 LKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARH 211
Query: 309 GIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTV 365
+ I K F G G++ I+ + +
Sbjct: 212 YSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQY 271
Query: 366 LAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSH--IIPIKIGNPAL 423
A +A++ S + VE K D L + + P I +I + L
Sbjct: 272 --AAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIFPRIRDTGL 329
Query: 424 NTK-ICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK 479
+K +++LKE V P + GE +R++ E +++ + + V K
Sbjct: 330 TSKKFSELMLKEARVAVVPGSAFGKA-GEGYVRISYA--TAYEKLEEAMDRMERVLK 383
>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
(aminotransferase) {Synechococcus sp., strain GR6
[TaxId: 1131]}
Length = 427
Score = 38.3 bits (88), Expect = 0.002
Identities = 51/303 (16%), Positives = 96/303 (31%), Gaps = 37/303 (12%)
Query: 201 RDGQLHNMDIISGTLVNPEVAIHA--SMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVK 258
+G H + VA S + ++A + +ND+ + + +
Sbjct: 140 FEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGE 199
Query: 259 IPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERD 314
I ++ E + +G I P L+ L E++ +H AL DEV G E+
Sbjct: 200 IAGVIL-EPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGGVQ--EKF 256
Query: 315 GQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTT-SLPPTVLAGAREAI 373
G ++ + +G G G G + + + + T S P + + +
Sbjct: 257 GVTPDLTTLGKIIGG--GLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTL 314
Query: 374 RILSSQEGVE-------LRAKHQDIVAYLRNELIQIG--------FPVEHTPSHIIPIKI 418
+L E + +A G F E + K
Sbjct: 315 ELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKK 374
Query: 419 GNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW 478
+ ++ +L E+G Y+ P + + HT E ID + V
Sbjct: 375 SDLQKFSRFHRGML-EQGIYLAPSQF---------EAGFTSLAHTEEDIDATLAAARTVM 424
Query: 479 KSL 481
+L
Sbjct: 425 SAL 427
>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS
{Escherichia coli [TaxId: 562]}
Length = 384
Score = 34.1 bits (77), Expect = 0.038
Identities = 18/128 (14%), Positives = 43/128 (33%), Gaps = 2/128 (1%)
Query: 62 HEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNS 121
+ ++ +A+L ++ + A K L D + +
Sbjct: 52 RDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAK 111
Query: 122 SAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTF 181
+ + + Q L + PKLV E+ + + + ++C ++ + GA++
Sbjct: 112 RGCYRVLFVDQGDE--QALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSV 169
Query: 182 VDEVHAVG 189
VD
Sbjct: 170 VDNTFLSP 177
>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2
(P-protein) {Thermus thermophilus [TaxId: 274]}
Length = 471
Score = 34.0 bits (77), Expect = 0.043
Identities = 49/353 (13%), Positives = 103/353 (29%), Gaps = 19/353 (5%)
Query: 138 QVLENMDVKIPKLVAFE--TVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHG 195
+++ + + L + T+ GA L + + H V +
Sbjct: 106 RLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAH 165
Query: 196 AGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENM 255
+ EV + A + + +A + + ++LE
Sbjct: 166 GSNPATASMAGYQVREIPSGPEGEVDLEALKRELGPHVAALMLTNPNTLGLFERRILEI- 224
Query: 256 DVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL-YGEHGAGIGERD 314
++ K + + + + ++ + +G G G G
Sbjct: 225 -SRLCKEAGVQLYYDGANLNAIMG-WARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVG 282
Query: 315 GQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIR 374
+ H + L + G D +S F + V A A IR
Sbjct: 283 VKAHLAPYLPVPL------VERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAY--IR 334
Query: 375 ILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPS--HIIPIKIGNPALNTKICDMLL 432
L + + A YL+ L + G+ V + H + + LL
Sbjct: 335 TLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYDGPSMHEFVAQPPEGFRALDLAKGLL 394
Query: 433 KEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPL 485
+ H + +P + +E + + PT +E ++ F + A+ K L
Sbjct: 395 ELGFHPPT-VYFP--LIVKEALMVEPTETEAKETLEAFAEAMGALLKKPKEWL 444
>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase
{Thermus thermophilus [TaxId: 274]}
Length = 421
Score = 32.9 bits (74), Expect = 0.080
Identities = 23/130 (17%), Positives = 44/130 (33%), Gaps = 1/130 (0%)
Query: 62 HEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNS 121
+ LE+ +A L +A L S + A L TL + + + + Q
Sbjct: 60 VDVLEKRLAALEGGKAALATASGHAAQFLALTTLAQAGDNIVSTPN-LYGGTFNQFKVTL 118
Query: 122 SAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTF 181
I R + + + + E++ + I L+ L + + + G
Sbjct: 119 KRLGIEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALI 178
Query: 182 VDEVHAVGLY 191
VD +G Y
Sbjct: 179 VDNTFGMGGY 188
>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus
scrofa), cytosolic form [TaxId: 9823]}
Length = 412
Score = 33.0 bits (74), Expect = 0.086
Identities = 41/257 (15%), Positives = 72/257 (28%), Gaps = 32/257 (12%)
Query: 240 YRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDE 296
R D+ LEN + V H+ TG K++ V + F D
Sbjct: 165 KRGLDLQGFLSDLENAP-EFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDS 223
Query: 297 VHAVGLYG--EHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAG 354
+ G E A + + K FG + S
Sbjct: 224 AYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRV 283
Query: 355 FIFTTSLPPTVL--AGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI---------G 403
+ A+ A + + EL + V + + ++ +
Sbjct: 284 LSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEA 343
Query: 404 FPVEHTPSHIIPIK--IGNPALNTKICDMLLKEKGHYVQP---INYPTVPVGEEKI-RLA 457
T +HI LN K + L+ +K Y+ P IN + + + +A
Sbjct: 344 LKTPGTWNHITDQIGMFSFTGLNPKQVEYLINQKHIYLLPSGRINMCGLT--TKNLDYVA 401
Query: 458 PTPFHTREMIDKFVTDL 474
I + VT +
Sbjct: 402 -------TSIHEAVTKI 411
>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
aminotransferase ArgD {Thermus thermophilus [TaxId:
274]}
Length = 387
Score = 32.4 bits (73), Expect = 0.11
Identities = 47/262 (17%), Positives = 83/262 (31%), Gaps = 54/262 (20%)
Query: 236 PKIIYRHNDVNHLTQVLENMDVKIPKLVAF--ETVHSMTGAICP----LKELCEVSHQHG 289
P +NDV L + ++ + A E V G L+ E++ + G
Sbjct: 158 PVEFIPYNDVEALKRAVDE------ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKG 211
Query: 290 ALTFVDEVH-AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTI 348
AL +DE+ +G G+ + + TL KA G G + +
Sbjct: 212 ALLILDEIQTGMGRTGKRF------AFEHFGIVPDILTLAKALGG-GVPLGVAVMREEVA 264
Query: 349 RSYAAGFIFTTSLPPTVLAGAREAIRI-------------LSSQEGVELRAKHQDIVAYL 395
RS G TT + A A L +LRA + +
Sbjct: 265 RSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPKIREV 324
Query: 396 RNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIR 455
R +G ++ +++ A I + + + + G IR
Sbjct: 325 R----GMGL--------MVGLELKEKA-APYIARLEKEHRVL--------ALQAGPTVIR 363
Query: 456 LAPTPFHTREMIDKFVTDLLAV 477
P +E +++ V + AV
Sbjct: 364 FLPPLVIEKEDLERVVEAVRAV 385
Score = 29.3 bits (65), Expect = 1.2
Identities = 23/133 (17%), Positives = 42/133 (31%), Gaps = 25/133 (18%)
Query: 103 HYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAF--ETVHSMT 160
+ P +NDV L + ++ + A E V
Sbjct: 137 MGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDE------ETAAVILEPVQGEG 190
Query: 161 GAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLV 216
G L+ E++ + GAL +DE+ G+G R G+ + +
Sbjct: 191 GVRPATPEFLRAAREITQEKGALLILDEIQ---------TGMG-RTGKRFAFEHFG---I 237
Query: 217 NPEVAIHASMIQG 229
P++ A + G
Sbjct: 238 VPDILTLAKALGG 250
>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp.
[TaxId: 1143]}
Length = 381
Score = 31.8 bits (70), Expect = 0.19
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Query: 411 SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKF 470
+ ++ + +P + I L+E+ Y++ I P IR E I+
Sbjct: 320 AGLVSFTVDSPLGHRAIV-QKLEEQRIYLRTIADPDC------IRACCHYITDEEEINHL 372
Query: 471 VTDL 474
+ L
Sbjct: 373 LARL 376
>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}
Length = 461
Score = 30.4 bits (67), Expect = 0.56
Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 20/89 (22%)
Query: 383 ELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPI 442
+L+A++ ++ +R G + ++ K+ + KG +
Sbjct: 383 DLQARYPQFISRVR----GRGT--------FCSFDTPDESIRNKLISIAR-NKGVML--- 426
Query: 443 NYPTVPVGEEKIRLAPTPFHTREMIDKFV 471
G++ IR PT F+
Sbjct: 427 ----GGCGDKSIRFRPTLVFRDHHAHLFL 451
>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase
{Pseudomonas cepacia [TaxId: 292]}
Length = 431
Score = 30.0 bits (66), Expect = 0.68
Identities = 37/250 (14%), Positives = 71/250 (28%), Gaps = 29/250 (11%)
Query: 240 YRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVD 295
++++ +++ E + S G I + L G L +D
Sbjct: 182 DYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILD 241
Query: 296 EVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGF 355
E G+ +RDG ++ +S T G IV + + F
Sbjct: 242 EAQT-GVGRTGTMFACQRDGVTPDILTLSKT--LGAGLPLAAIVTSAAIEERAHELGYLF 298
Query: 356 IFTTSLPPTVLAGAREAIRILSSQ--------------EGVELRAKHQDIVAYLRNELIQ 401
T P A + ++ G+ + D + +R +
Sbjct: 299 YTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLL 358
Query: 402 IGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF 461
+G + P L KI + G + + P R+AP
Sbjct: 359 LGVEIVKDRRTKEP----ADGLGAKITRECM-NLGLSMNIVQLPG---MGGVFRIAPPLT 410
Query: 462 HTREMIDKFV 471
+ + ID +
Sbjct: 411 VSEDEIDLGL 420
>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas
vaginalis, MGL2 [TaxId: 5722]}
Length = 331
Score = 28.7 bits (63), Expect = 1.8
Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 2/135 (1%)
Query: 65 LEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAP 124
LE +AKL EA S A ++++T K G H ISD + +
Sbjct: 3 LEGKIAKLEHAEACAATASGMGAIAASVWTFLK--AGDHLISDDCLYGCTHALFEHQLRK 60
Query: 125 KIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDE 184
+ + +E ++V FET + T + +++ + + + + + +
Sbjct: 61 FGVEVDFIDMAVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVD 120
Query: 185 VHAVGLYGEHGAGIG 199
+ +G
Sbjct: 121 NTFASPILTNPLDLG 135
>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 105
Score = 26.3 bits (58), Expect = 3.3
Identities = 7/50 (14%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 210 IISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKI 259
II L + I +R + K+I + ++++ + + +
Sbjct: 16 IIELLLEGDYSPSELARILDMRGKGSKKVILED--LKVISKIAKREGMVL 63
>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco
(Nicotiana tabacum) [TaxId: 4097]}
Length = 236
Score = 27.1 bits (60), Expect = 4.4
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 370 REAIRILSSQEGVELRAKHQDIVAYLRN-------ELIQIGFPVEHTP-SHIIPIKIGNP 421
R + RI+SS E E +++ V +R EL +I + + +IP
Sbjct: 59 RASWRIISSIEQKEESRGNEEHVNSIREYRSKIENELSKICDGILKLLDAKLIPS----- 113
Query: 422 ALNTKICDMLLKEKGHY 438
A + LK KG Y
Sbjct: 114 AASGDSKVFYLKMKGDY 130
>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 312
Score = 27.3 bits (60), Expect = 4.7
Identities = 10/66 (15%), Positives = 21/66 (31%)
Query: 198 IGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV 257
IG + +L N D++ + + H + N I + +L
Sbjct: 46 IGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKR 105
Query: 258 KIPKLV 263
+L+
Sbjct: 106 VGARLL 111
>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Paracoccus denitrificans [TaxId: 266]}
Length = 394
Score = 26.9 bits (58), Expect = 7.6
Identities = 43/358 (12%), Positives = 94/358 (26%), Gaps = 33/358 (9%)
Query: 127 IYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE-----VSHQHGALTF 181
+Y+ + T ++ + +++ ET + G + E + +
Sbjct: 35 VYKDATGH--TPIMRAVHAAEQRMLETETTKTYAG-LSGEPEFQKAMGELILGDGLKSET 91
Query: 182 VDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR 241
+ VG G + ++ + P + + +
Sbjct: 92 TATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAET 151
Query: 242 HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVH 298
+ K ++ H+ TGA E+ + + GAL +D +
Sbjct: 152 RGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAY 211
Query: 299 A-VGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIF 357
G E A +I+ + K FG +
Sbjct: 212 QGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGA 271
Query: 358 TTSLPPTVL--AGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI---------GFPV 406
L A + + ELRA + +R+ ++++
Sbjct: 272 MAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSG 331
Query: 407 EHTPSHIIPIKIGNPA---LNTKICDMLLKEKGHYVQP---INYPTVPVGEEKI-RLA 457
+ G + + + +E G Y+ IN + + I LA
Sbjct: 332 SDRFGFVAE-HRGMFSRLGATPEQVKRIKEEFGIYMVGDSRINIAGLN--DNTIPILA 386
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.409
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,897,304
Number of extensions: 89287
Number of successful extensions: 286
Number of sequences better than 10.0: 1
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 56
Length of query: 514
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 425
Effective length of database: 1,185,626
Effective search space: 503891050
Effective search space used: 503891050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.7 bits)