BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16849
(371 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 132 bits (333), Expect = 2e-31, Method: Composition-based stats.
Identities = 55/69 (79%), Positives = 60/69 (86%)
Query: 234 KKLTSHACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKH 293
K+ +H C + GCGKTYTKSSHLKAHLRTHTGEKPY C W GCGWKFARSDELTRH+RKH
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 294 TGDRPFQCK 302
TG RPFQC+
Sbjct: 61 TGHRPFQCQ 69
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 131 bits (330), Expect = 5e-31, Method: Composition-based stats.
Identities = 57/72 (79%), Positives = 61/72 (84%), Gaps = 2/72 (2%)
Query: 231 GSRKKLTSHACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHF 290
GSR +H C + GCGKTYTKSSHLKAHLRTHTGEKPY C W GCGWKFARSDELTRH+
Sbjct: 1 GSRT--ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY 58
Query: 291 RKHTGDRPFQCK 302
RKHTG RPFQC+
Sbjct: 59 RKHTGHRPFQCQ 70
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 55/83 (66%), Positives = 62/83 (74%), Gaps = 2/83 (2%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
H C +PGC K YTKSSHLKAHLRTHTGEKPY+C W+GC W+FARSDELTRH+RKHTG +P
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP 75
Query: 299 FQCKPNLVNPSIKEGKDLAATAK 321
FQC + N S LA K
Sbjct: 76 FQC--GVCNRSFSRSDHLALHMK 96
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 98.6 bits (244), Expect = 5e-21, Method: Composition-based stats.
Identities = 43/59 (72%), Positives = 48/59 (81%)
Query: 235 KLTSHACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKH 293
++ SH C HPGCGKTY KSSHLKAH RTHTGEKP+ C WKGC +FARSDEL+RH R H
Sbjct: 14 RIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 36.2 bits (82), Expect = 0.027, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + C GCG + +S L H R HTG++PF C
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSC 50
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 47/62 (75%)
Query: 241 CFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQ 300
C +PGC K Y K SHL+ H R HTGEKPYQC +K C +F+RSD+L RH R+HTG +PFQ
Sbjct: 9 CAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQ 68
Query: 301 CK 302
CK
Sbjct: 69 CK 70
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 227 ERRSGSRKKLTSHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGW 278
ERR +L H H G C + +++S HLK H RTHTGEKP+ C+W C
Sbjct: 45 ERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQK 104
Query: 279 KFARSDELTRHFRKH 293
KFARSDEL RH H
Sbjct: 105 KFARSDELVRHHNMH 119
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
++P+ C + GC ++ + L H RKHTG++P+QC
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQC 39
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 43/58 (74%), Gaps = 2/58 (3%)
Query: 244 PGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
P CGK++++ +HL+AH RTHTGEKPY+C CG F+R D L H R HTG++P++C
Sbjct: 109 PECGKSFSQLAHLRAHQRTHTGEKPYKCPE--CGKSFSREDNLHTHQRTHTGEKPYKC 164
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
Query: 244 PGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
P CGK++++S HL H RTHTGEKPY+C CG F+ +LTRH R HTG++P++C
Sbjct: 25 PECGKSFSRSDHLAEHQRTHTGEKPYKCPE--CGKSFSDKKDLTRHQRTHTGEKPYKC 80
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 41/58 (70%), Gaps = 2/58 (3%)
Query: 244 PGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
P CGK++++ ++L+AH RTHTGEKPY C CG F++ L H R HTG++P++C
Sbjct: 81 PECGKSFSQRANLRAHQRTHTGEKPYACPE--CGKSFSQLAHLRAHQRTHTGEKPYKC 136
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 244 PGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDR 297
P CGK++++ +L H RTHTGEKPY+C CG F+R D L H R HTG +
Sbjct: 137 PECGKSFSREDNLHTHQRTHTGEKPYKCPE--CGKSFSRRDALNVHQRTHTGKK 188
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 265 GEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCKPNLVNPSIKEGKDL 316
GEKPY C CG F+RSD L H R HTG++P++C P S + KDL
Sbjct: 18 GEKPYACPE--CGKSFSRSDHLAEHQRTHTGEKPYKC-PE-CGKSFSDKKDL 65
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCKPNL 305
CGK + +SS LK H HTGEKP+QC ++GCG +F+ L H R HTGDRP+ C +
Sbjct: 40 CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDG 99
Query: 306 VNPSIKEGKDLAA 318
N + +L +
Sbjct: 100 CNKKFAQSTNLKS 112
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 241 CFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKH 293
C GCGK ++ +L+ H+R HTG++PY C + GC KFA+S L H H
Sbjct: 65 CTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 68.6 bits (166), Expect = 5e-12, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
+AC C + +++S+ L H+R HTG+KP+QC+ C F+RSD LT H R HTG++P
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKP 62
Query: 299 FQC 301
F C
Sbjct: 63 FAC 65
Score = 63.2 bits (152), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 10/75 (13%)
Query: 227 ERRSGSRKKLTSHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGW 278
+RR +LT H H G C + +++S HL H+RTHTGEKP+ C CG
Sbjct: 13 DRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGR 70
Query: 279 KFARSDELTRHFRKH 293
KFARSDE RH + H
Sbjct: 71 KFARSDERKRHTKIH 85
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/37 (56%), Positives = 27/37 (72%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
E+PY C + C +F+RS ELTRH R HTG +PFQC+
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCR 38
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 45/58 (77%), Gaps = 2/58 (3%)
Query: 244 PGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
P CGK++++SS+L+ H RTHTGEKPY+C CG F++S +L +H R HTG++P++C
Sbjct: 8 PECGKSFSQSSNLQKHQRTHTGEKPYKCPE--CGKSFSQSSDLQKHQRTHTGEKPYKC 63
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 244 PGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKH 293
P CGK++++SS L+ H RTHTGEKPY+C CG F+RSD L+RH R H
Sbjct: 36 PECGKSFSQSSDLQKHQRTHTGEKPYKCPE--CGKSFSRSDHLSRHQRTH 83
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 244 PGCGKTYTKSSHLKAHLRTHTGEK 267
P CGK++++S HL H RTH +K
Sbjct: 64 PECGKSFSRSDHLSRHQRTHQNKK 87
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 68.2 bits (165), Expect = 6e-12, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
+AC C + +++S+ L H+R HTG+KP+QC+ C F+RSD LT H R HTG++P
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKP 62
Query: 299 FQC 301
F C
Sbjct: 63 FAC 65
Score = 62.8 bits (151), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 227 ERRSGSRKKLTSHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGW 278
+RR LT H H G C + +++S HL H+RTHTGEKP+ C CG
Sbjct: 13 DRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGR 70
Query: 279 KFARSDELTRHFRKH 293
KFARSDE RH + H
Sbjct: 71 KFARSDERKRHTKIH 85
Score = 52.4 bits (124), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 30/44 (68%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCKPNLVNPS 309
E+PY C + C +F+RS +LTRH R HTG +PFQC+ + N S
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFS 45
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 68.2 bits (165), Expect = 6e-12, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
+AC C + ++ SS+L H+R HTG+KP+QC+ C F+RSD LT H R HTG++P
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKP 62
Query: 299 FQC 301
F C
Sbjct: 63 FAC 65
Score = 62.8 bits (151), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 227 ERRSGSRKKLTSHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGW 278
+RR LT H H G C + +++S HL H+RTHTGEKP+ C CG
Sbjct: 13 DRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGR 70
Query: 279 KFARSDELTRHFRKH 293
KFARSDE RH + H
Sbjct: 71 KFARSDERKRHTKIH 85
Score = 48.9 bits (115), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCKPNLVNPS 309
E+PY C + C +F+ S LTRH R HTG +PFQC+ + N S
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFS 45
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 68.2 bits (165), Expect = 8e-12, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
+AC C + +++S L H+R HTG+KP+QC+ C F+RSD LT H R HTG++P
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKP 62
Query: 299 FQC 301
F C
Sbjct: 63 FAC 65
Score = 63.5 bits (153), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 10/75 (13%)
Query: 227 ERRSGSRKKLTSHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGW 278
+RR +LT H H G C + +++S HL H+RTHTGEKP+ C CG
Sbjct: 13 DRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGR 70
Query: 279 KFARSDELTRHFRKH 293
KFARSDE RH + H
Sbjct: 71 KFARSDERKRHTKIH 85
Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/37 (59%), Positives = 28/37 (75%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
E+PY C + C +F+RSDELTRH R HTG +PFQC+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCR 38
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 68.2 bits (165), Expect = 8e-12, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
+AC C + +++S L H+R HTG+KP+QC+ C F+RSD LT H R HTG++P
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKP 62
Query: 299 FQC 301
F C
Sbjct: 63 FAC 65
Score = 63.2 bits (152), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 10/75 (13%)
Query: 227 ERRSGSRKKLTSHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGW 278
+RR +LT H H G C + +++S HL H+RTHTGEKP+ C CG
Sbjct: 13 DRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGR 70
Query: 279 KFARSDELTRHFRKH 293
KFARSDE RH + H
Sbjct: 71 KFARSDERKRHTKIH 85
Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/37 (59%), Positives = 28/37 (75%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
E+PY C + C +F+RSDELTRH R HTG +PFQC+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCR 38
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 67.8 bits (164), Expect = 8e-12, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
+AC C + +++S L H+R HTG+KP+QC+ C F+RSD LT H R HTG++P
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKP 61
Query: 299 FQC 301
F C
Sbjct: 62 FAC 64
Score = 63.2 bits (152), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 10/75 (13%)
Query: 227 ERRSGSRKKLTSHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGW 278
+RR +LT H H G C + +++S HL H+RTHTGEKP+ C CG
Sbjct: 12 DRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGR 69
Query: 279 KFARSDELTRHFRKH 293
KFARSDE RH + H
Sbjct: 70 KFARSDERKRHTKIH 84
Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCKPNLVNPS 309
E+PY C + C +F+RSDELTRH R HTG +PFQC+ + N S
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 44
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 67.4 bits (163), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
+AC C + +++S L H+R HTG+KP+QC+ C F+RSD LT H R HTG++P
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKP 62
Query: 299 FQC 301
F C
Sbjct: 63 FAC 65
Score = 62.8 bits (151), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 227 ERRSGSRKKLTSHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGW 278
+RR LT H H G C + +++S HL H+RTHTGEKP+ C CG
Sbjct: 13 DRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGR 70
Query: 279 KFARSDELTRHFRKH 293
KFARSDE RH + H
Sbjct: 71 KFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
E+PY C + C +F++S LTRH R HTG +PFQC+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCR 38
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 40/57 (70%)
Query: 241 CFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDR 297
C PGCGK + +S +LK H RTHTGEKP++C+++GC +FA S + +H HT D+
Sbjct: 93 CPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 239 HACFHPGC---GKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTG 295
H C+ C GK++ L H+R HTGEKP+ C + GCG FARS+ L H R HTG
Sbjct: 58 HVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTG 117
Query: 296 DRPFQCKPNLVNPSIKEGKDLAATAKCPSADTSQP 330
++PF+C+ + D ++D S P
Sbjct: 118 EKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGP 152
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHF-RKHTGDR 297
H C GC K+Y++ +LK HLR+HTGEKPY C+ +GC F+ + + +H R H+ ++
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK 127
Query: 298 PFQCK 302
P+ CK
Sbjct: 128 PYVCK 132
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 231 GSRKKLTSHACFHPGCGKT---YTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELT 287
G RK+ H GC + + L H+R HTGEKP++C ++GC ++R + L
Sbjct: 30 GERKEFVCHW---GGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLK 86
Query: 288 RHFRKHTGDRPFQCKPNLVNPSIKEGKDLA 317
H R HTG++P+ C+ + + D A
Sbjct: 87 THLRSHTGEKPYMCEHEGCSKAFSNASDRA 116
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 241 CFHPGCGKTYTKSSHLKAHL-RTHTGEKPYQCKWKGCGWKFARSDELTRHFR 291
C H GC K ++ +S H RTH+ EKPY CK GC ++ L +H +
Sbjct: 100 CEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
CGK +++ LK H+R HTG KPY+CK C + A S L +H R H+ +RPF+C+
Sbjct: 14 CGKCFSRKDKLKTHMRCHTGVKPYKCKT--CDYAAADSSSLNKHLRIHSDERPFKCQ 68
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 59.3 bits (142), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
+AC C + +++ ++L H+R HTG+KP+QC+ C F++ L +H R HTG++P
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRI--CMRNFSQHTGLNQHIRTHTGEKP 62
Query: 299 FQC 301
F C
Sbjct: 63 FAC 65
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCKPNLVNPSIKEG 313
E+PY C + C +F++ L H R HTG +PFQC+ + N S G
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTG 49
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 58.5 bits (140), Expect = 5e-09, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
+AC C + +++ ++L H+R HTG+KP+QC+ C F++ L H R HTG++P
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRI--CMRNFSQQASLNAHIRTHTGEKP 62
Query: 299 FQC 301
F C
Sbjct: 63 FAC 65
Score = 51.2 bits (121), Expect = 8e-07, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 10/75 (13%)
Query: 227 ERRSGSRKKLTSHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGW 278
+RR + L +H H G C + +++ + L AH+RTHTGEKP+ C CG
Sbjct: 13 DRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDI--CGR 70
Query: 279 KFARSDELTRHFRKH 293
KFA TRH + H
Sbjct: 71 KFATLHTRTRHTKIH 85
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
E+PY C + C +F++ L H R HTG +PFQC+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCR 38
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 58.5 bits (140), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRH 289
C + +++S HL H+RTHTGEKP+ C CG KFARSDE RH
Sbjct: 9 CMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRH 50
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
KP+QC+ C F+RSD LT H R HTG++PF C
Sbjct: 2 KPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFAC 34
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 235 KLTSHACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHT 294
K+ +AC C + +++S L H+R HTG+KP+QC+ C F+RSD LT H R HT
Sbjct: 16 KMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHT 73
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCKPNLVN 307
+PY C + C +F+RSDELTRH R HTG +PFQC+ + N
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRN 58
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 241 CFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQ 300
C CG Y K+ L+AHL HTGEKP+ CK +GC F LTRH HTG++ F
Sbjct: 6 CSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFT 65
Query: 301 CKPNLVNPSIKEGKDLAATAK 321
C +G DL T K
Sbjct: 66 CDS--------DGCDLRFTTK 78
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%)
Query: 241 CFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRK 292
C GC K +T HL H THTGEK + C GC +F + +HF +
Sbjct: 36 CKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR 87
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
K Y C + CG + ++ +L H KHTG++PF CK
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCK 37
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 27/33 (81%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKP+ C W GCGW+F+RSDEL+RH R H+G +P
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 34.7 bits (78), Expect = 0.085, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 240 ACFHPGCGKTYTKSSHLKAHLRTHTGEKP 268
AC PGCG +++S L H R+H+G KP
Sbjct: 14 ACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
CGK+++ SS L H RTHTGEKPY+C CG F + L H R HTG P
Sbjct: 24 CGKSFSHSSDLSKHRRTHTGEKPYKC--DECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 37.0 bits (84), Expect = 0.017, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 269 YQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
Y+C CG F+ S +L++H R HTG++P++C
Sbjct: 19 YKCD--ECGKSFSHSSDLSKHRRTHTGEKPYKC 49
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCKPNL 305
CG Y K+ L+AHL HTGEKP+ CK +GC F LTRH HTG++ F C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS-- 77
Query: 306 VNPSIKEGKDLAATAK 321
+G DL T K
Sbjct: 78 ------DGCDLRFTTK 87
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 235 KLTSHACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHT 294
K+ + C CGK + K + LK H +HT + PY+C +GC +F+ L RH + H
Sbjct: 101 KICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 160
Query: 295 G 295
G
Sbjct: 161 G 161
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 235 KLTSHACFH----------PGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSD 284
KL +H C H GC K +T HL H THTGEK + C GC +F
Sbjct: 29 KLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKA 88
Query: 285 ELTRHFRK 292
+ +HF +
Sbjct: 89 NMKKHFNR 96
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
K Y C + CG + ++ +L H KHTG++PF CK
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCK 46
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 54.7 bits (130), Expect = 8e-08, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGD--RPFQC-- 301
CGK + HL H +H+GEKPY C CG +F R D ++ H R H G +P+ C
Sbjct: 13 CGKIFRDVYHLNRHKLSHSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDGSVGKPYICQS 70
Query: 302 ------KPNLVNPSIKE 312
+P+ +N IK+
Sbjct: 71 CGKGFSRPDHLNGHIKQ 87
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 244 PGCGKTYTKSSHLKAHLRTHTGE--KPYQCKWKGCGWKFARSDELTRHFRK-HTG 295
P CG + + + H+R+H G KPY C+ CG F+R D L H ++ H+G
Sbjct: 39 PVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ--SCGKGFSRPDHLNGHIKQVHSG 91
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
CG+ +TKS +L H RTHT E+PY C C F R D L H H+ ++PF+C+
Sbjct: 23 CGRHFTKSYNLLIHERTHTDERPYTCDI--CHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRH 289
C K + + HL+ H H+ EKP++C+ CG F +S L H
Sbjct: 51 CHKAFRRQDHLRDHRYIHSKEKPFKCQE--CGKGFCQSRTLAVH 92
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+K + CK+ CG F +S L H R HT +RP+ C
Sbjct: 15 KKEFICKF--CGRHFTKSYNLLIHERTHTDERPYTC 48
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 1)
Length = 37
Score = 48.5 bits (114), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 235 KLTSHACFHPGCGKTYTKSSHLKAHLRTHTGEK 267
K H C GCGK Y K+SHL+AHLR HTGE+
Sbjct: 5 KKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 32.3 bits (72), Expect = 0.46, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDR 297
+K + C +GCG + ++ L H R HTG+R
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 48.5 bits (114), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRK-HTGD 296
C + + + HLK H R+HT EKPY C C F R D L RH +K H+G+
Sbjct: 8 CTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRHAQKIHSGN 57
Score = 35.4 bits (80), Expect = 0.047, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 276 CGWKFARSDELTRHFRKHTGDRPFQC 301
C FAR + L RH+R HT ++P+ C
Sbjct: 8 CTRAFARQEHLKRHYRSHTNEKPYPC 33
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
CGK++ +SS L HL H+ +PY C++ CG +F + ++ +H HTG++P +C+
Sbjct: 7 CGKSFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTG 295
CGK + + S +K H HTGEKP++C+ CG F++S L H RKHTG
Sbjct: 35 CGKRFHQKSDMKKHTFIHTGEKPHKCQV--CGKAFSQSSNLITHSRKHTG 82
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHT 294
CGK +++SS L H R HTGEKPY+C CG F+++ L H R HT
Sbjct: 20 CGKAFSRSSILVQHQRVHTGEKPYKCLE--CGKAFSQNSGLINHQRIHT 66
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
EKPY C CG F+RS L +H R HTG++P++C
Sbjct: 12 EKPYGCVE--CGKAFSRSSILVQHQRVHTGEKPYKC 45
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKH 293
CGK + + +L HLRTHTGEKPY+C++ C + A+ L H +H
Sbjct: 10 CGKFFRSNYYLNIHLRTHTGEKPYKCEF--CEYAAAQKTSLRYHLERH 55
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 265 GEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
G +C + CG F + L H R HTG++P++C+
Sbjct: 1 GSSSRECSY--CGKFFRSNYYLNIHLRTHTGEKPYKCE 36
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
CGK++T S H+ H G +PY C CG KF L H + HTG +P++C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIHTGIKPYEC 68
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRH 289
CGK + HL H++ HTG KPY+C C +F D RH
Sbjct: 43 CGKKFKMKHHLVGHMKIHTGIKPYECNI--CAKRFMWRDSFHRH 84
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHTGDR 297
+P+ C W CG +F RSDEL RH R HTG++
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 34.7 bits (78), Expect = 0.096, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 241 CFHPGCGKTYTKSSHLKAHLRTHTGEK 267
C CGK +T+S L+ H RTHTGEK
Sbjct: 5 CTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTG 295
+ C CGK + K + LK H +HT + PY+C +GC +F+ L RH + H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTG 295
+ C CGK + K + LK H +HT + PY+C +GC +F+ L RH + H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
C ++ +L +H HTGEKPY+C CG +F R L H R H+G++P
Sbjct: 23 CQASFRYKGNLASHKTVHTGEKPYRCNI--CGAQFNRPANLKTHTRIHSGEKP 73
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 8/41 (19%)
Query: 236 LTSHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKP 268
L SH H G CG + + ++LK H R H+GEKP
Sbjct: 33 LASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+KPY+C C F L H HTG++P++C
Sbjct: 15 DKPYKCDR--CQASFRYKGNLASHKTVHTGEKPYRC 48
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 29/87 (33%)
Query: 244 PGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKG---------------------------- 275
P C K + +LK H R HTGEKP++C G
Sbjct: 11 PTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCS 70
Query: 276 -CGWKFARSDELTRHFRKHTGDRPFQC 301
C F R EL H HTG+ P++C
Sbjct: 71 VCQETFRRRMELRLHMVSHTGEMPYKC 97
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRK-HTG 295
C +T+ + L+ H+ +HTGE PY+C C +F + +L H K H+G
Sbjct: 72 CQETFRRRMELRLHMVSHTGEMPYKC--SSCSQQFMQKKDLQSHMIKLHSG 120
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKH 293
CGKTY +S L H R H G +P C CG F E+ RH + H
Sbjct: 10 CGKTYRDASGLSRHRRAHLGYRPRSC--PECGKCFRDQSEVNRHLKVH 55
Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
E+P+ C + CG + + L+RH R H G RP C
Sbjct: 2 ERPFFCNF--CGKTYRDASGLSRHRRAHLGYRPRSC 35
>pdb|1U86|A Chain A, 321-Tw-322 Insertion Mutant Of The Third Zinc Finger Of
Bklf
Length = 35
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 264 TGEKPYQCKWKGCGWKFARSDELTRHFRKH 293
TG KP+QC W C F+RSD L H ++H
Sbjct: 3 TGIKPFQCTWPDCDRSFSRSDHLALHRKRH 32
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQ---CK 302
C ++Y + L+ H H+ EK Y C++ C F ++ T+H HTG+R +Q C
Sbjct: 28 CKRSYVCLTSLRRHFNIHSWEKKYPCRY--CEKVFPLAEYRTKHEIHHTGERRYQCLACG 85
Query: 303 PNLVNPSIKEGKDLAATAKCPSADT 327
+ +N + ++ PS D+
Sbjct: 86 KSFINYQFMSSHIKSVHSQDPSGDS 110
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFR 291
CG K S LK H+RTHT +PY C + C + F LT+H +
Sbjct: 7 CGIRXKKPSMLKKHIRTHTDVRPYHCTY--CNFSFKTKGNLTKHMK 50
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 38.1 bits (87), Expect = 0.007, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY C + CG F S EL RH R HTG++P
Sbjct: 10 EKPYVCDY--CGKAFGLSAELVRHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.0, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK + S+ L H R HTGEKP
Sbjct: 18 CGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK +++SSHL+ H R HTGEKP
Sbjct: 18 CGKEFSQSSHLQTHQRVHTGEKP 40
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EK Y+C CG +F++S L H R HTG++P
Sbjct: 10 EKCYKCDV--CGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK +T++SHL +H R HTGEKP
Sbjct: 18 CGKRFTQNSHLHSHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKP+QC+ CG +F ++ L H R HTG++P
Sbjct: 10 EKPFQCEE--CGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGKT+++ S L AH RTHTGEKP
Sbjct: 18 CGKTFSQKSILSAHQRTHTGEKP 40
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY C CG F++ L+ H R HTG++P
Sbjct: 10 EKPYGCNE--CGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK +T++SHL H R HTGEKP
Sbjct: 18 CGKVFTQNSHLTNHWRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY+C CG F ++ LT H+R HTG++P
Sbjct: 10 EKPYKCN--ECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
KPYQC CG F+++ +L RH R HTG++P
Sbjct: 11 KPYQCNE--CGKAFSQTSKLARHQRVHTGEKP 40
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK ++++S L H R HTGEKP
Sbjct: 18 CGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY+C CG F+++ +L RH R HTG++P
Sbjct: 10 EKPYKCNE--CGKAFSQTSKLARHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK ++++S L H R HTGEKP
Sbjct: 18 CGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY+CK CG F+++ L +H R HTG++P
Sbjct: 10 EKPYECKE--CGKAFSQTTHLIQHQRVHTGEKP 40
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK +++++HL H R HTGEKP
Sbjct: 18 CGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY+C CG FA+ LT+H R HTG++P
Sbjct: 10 EKPYRCGE--CGKAFAQKANLTQHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK + + ++L H R HTGEKP
Sbjct: 18 CGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 36.2 bits (82), Expect = 0.031, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 264 TGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
+GEKPYQCK CG F++ L H R HTG P
Sbjct: 6 SGEKPYQCK--ECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK + ++ HL +HLR HTGEKP
Sbjct: 18 CGKAFRQNIHLASHLRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKP++CK CG F ++ L H R HTG++P
Sbjct: 10 EKPFKCKE--CGKAFRQNIHLASHLRIHTGEKP 40
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 36.2 bits (82), Expect = 0.033, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 264 TGEKPYQCKWKGCGWKFARSDELTRHFRKH 293
TG KP+QC C W F+RSD L H ++H
Sbjct: 3 TGIKPFQCP--DCDWSFSRSDHLALHRKRH 30
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK++ + SHL H R HTGEKP
Sbjct: 18 CGKSFIQKSHLNRHRRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY C CG F + L RH R HTG++P
Sbjct: 10 EKPYICNE--CGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK++ +S+HL H R HTGEKP
Sbjct: 18 CGKSFIQSAHLIQHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
E+P++C CG F +S L +H R HTG++P
Sbjct: 10 ERPHKCNE--CGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 35.4 bits (80), Expect = 0.050, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 264 TGEKPYQCKWKGCGWKFARSDELTRHFRKHTG 295
+GEKPY C CG +F R D ++ H R H G
Sbjct: 6 SGEKPYSCPV--CGLRFKRKDRMSYHVRSHDG 35
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHTGDR 297
KP+QCK C KF+RSD L H R HTG++
Sbjct: 1 KPFQCKT--CQRKFSRSDHLKTHTRTHTGEK 29
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEK 267
C + +++S HLK H RTHTGEK
Sbjct: 8 CQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.4 bits (80), Expect = 0.056, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK + S+L H+RTHTGEKP
Sbjct: 16 CGKAFRSKSYLIIHMRTHTGEKP 38
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 264 TGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
+G KPY C CG F L H R HTG++P
Sbjct: 6 SGVKPYGCS--ECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK +T++S L +H R HTGEKP
Sbjct: 18 CGKRFTQNSQLHSHQRVHTGEKP 40
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKP++C+ CG +F ++ +L H R HTG++P
Sbjct: 10 EKPFKCEE--CGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 241 CFHPGCGKTYTKSSHLKAHLR-THTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPF 299
C PGCG+ ++ +L H + H +K + C CG F L H + H+ R +
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDY 69
Query: 300 QCK 302
C+
Sbjct: 70 ICE 72
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 238 SHACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKG 275
S +C P CGK++ HLK H++ H+ + Y C++ G
Sbjct: 38 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSG 75
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 34.7 bits (78), Expect = 0.078, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEK 267
CGK +T S +LK HLR H+GEK
Sbjct: 8 CGKQFTTSGNLKRHLRIHSGEK 29
Score = 28.9 bits (63), Expect = 5.0, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 268 PYQCKWKGCGWKFARSDELTRHFRKHTGDR 297
P +C+ CG +F S L RH R H+G++
Sbjct: 2 PLKCR--ECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK+Y + HL H R HTGEKP
Sbjct: 18 CGKSYNQRVHLTQHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKP++C CG + + LT+H R HTG++P
Sbjct: 10 EKPFKCGE--CGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK +T++SHL H R HTG KP
Sbjct: 18 CGKVFTQNSHLARHRRVHTGGKP 40
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY+C CG F ++ L RH R HTG +P
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK ++ S+L H+RTH+GEKP
Sbjct: 18 CGKAFSSKSYLIIHMRTHSGEKP 40
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY C CG F+ L H R H+G++P
Sbjct: 10 EKPYGCSE--CGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 34.3 bits (77), Expect = 0.10, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEK 267
CGK +T++S L AH+R HTGEK
Sbjct: 8 CGKAFTQASSLIAHVRQHTGEK 29
Score = 28.5 bits (62), Expect = 6.5, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHTGDR 297
KP QC CG F ++ L H R+HTG++
Sbjct: 1 KPCQCVM--CGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 264 TGEKPYQCKWKGCGWKFARSDELTRHFRKHTGD 296
+GE PY+C CG F R D+L H R H G+
Sbjct: 6 SGENPYECSE--CGKAFNRKDQLISHQRTHAGE 36
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK+++ SS L H R HTGEKP
Sbjct: 18 CGKSFSISSQLATHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKP++C CG F+ S +L H R HTG++P
Sbjct: 10 EKPFECAE--CGKSFSISSQLATHQRIHTGEKP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK++TK S L H + HTGEKP
Sbjct: 18 CGKSFTKKSQLHVHQQIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY+C CG F + +L H + HTG++P
Sbjct: 10 EKPYECSI--CGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 238 SHACFHPGCGKTYTKSSHLKAHLRTHTGEKP 268
SH C CG+ +T SHL H R HTGEKP
Sbjct: 12 SHQCHE--CGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRK-HTGDRPFQCKPNLVNPS 309
KPY C+ CG F+R D L H ++ HT +RP +C+ + PS
Sbjct: 11 KPYICQ--SCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 246 CGKTYTKSSHLKAHLR-THTGEKPYQCK 272
CGK +++ HL H++ HT E+P++C+
Sbjct: 18 CGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK +T++SHL H R HTG KP
Sbjct: 18 CGKVFTQNSHLANHQRIHTGVKP 40
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY+C CG F ++ L H R HTG +P
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK +T++SHL H HTGEKP
Sbjct: 18 CGKVFTQNSHLARHRGIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY+C CG F ++ L RH HTG++P
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
C KT+T+SS L H R HTGEKP
Sbjct: 18 CKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK +T++SHL H HTGEKP
Sbjct: 18 CGKVFTQNSHLARHRGIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
+KPY+C CG F ++ L RH HTG++P
Sbjct: 10 KKPYKCNE--CGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
C K +T+ +HL H +THTGEKP
Sbjct: 18 CSKAFTQKAHLAQHQKTHTGEKP 40
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY+CK C F + L +H + HTG++P
Sbjct: 10 EKPYECKV--CSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK +T++SHL H HTGEKP
Sbjct: 18 CGKVFTQNSHLVRHRGIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY+C CG F ++ L RH HTG++P
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY+C CG F + L+RH R HTG++P
Sbjct: 10 EKPYKCNE--CGKVFRHNSYLSRHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK + +S+L H R HTGEKP
Sbjct: 18 CGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGKT+ +SS L H R H+GEKP
Sbjct: 16 CGKTFRQSSCLSKHQRIHSGEKP 38
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 264 TGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
+G+KP C CG F +S L++H R H+G++P
Sbjct: 6 SGKKPLVCNE--CGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY+C CG F + T+H R HTG RP
Sbjct: 10 EKPYKCME--CGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY+C CG F R+ L RH HTG++P
Sbjct: 10 EKPYKCHE--CGKVFRRNSHLARHQLIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK + ++SHL H HTGEKP
Sbjct: 18 CGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY C+ CG F +L H R HTG++P
Sbjct: 10 EKPYNCEE--CGKAFIHDSQLQEHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK + S L+ H R HTGEKP
Sbjct: 18 CGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY+C CG F R L H R HTG RP
Sbjct: 10 EKPYKCSE--CGKAFHRHTHLNEHRRIHTGYRP 40
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK + + +HL H R HTG +P
Sbjct: 18 CGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK ++++S L H + HTGEKP
Sbjct: 18 CGKVFSRNSQLSQHQKIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EK Y+C CG F+R+ +L++H + HTG++P
Sbjct: 10 EKRYKCNE--CGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK++ K S L H R HTGE P
Sbjct: 18 CGKSFIKKSQLHVHQRIHTGENP 40
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY+C CG F + +L H R HTG+ P
Sbjct: 10 EKPYECS--DCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.3 bits (72), Expect = 0.49, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 264 TGEKPYQCKWKGCGWKFARSDELTRHFRKHTGD 296
+GEKPY+C CG F +L H R HTG+
Sbjct: 6 SGEKPYECT--DCGKAFGLKSQLIIHQRTHTGE 36
Score = 28.1 bits (61), Expect = 9.3, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 246 CGKTYTKSSHLKAHLRTHTGE 266
CGK + S L H RTHTGE
Sbjct: 16 CGKAFGLKSQLIIHQRTHTGE 36
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 32.0 bits (71), Expect = 0.60, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY+C CG F++ L H R HTG P
Sbjct: 9 EKPYRCD--QCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 29.3 bits (64), Expect = 4.0, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK +++ L H+R HTG P
Sbjct: 17 CGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 32.0 bits (71), Expect = 0.61, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 261 RTHTGEKPYQCKWKGCGWKFARSDELTRHFRKH 293
R TG KP+QC C F+RSD L H ++H
Sbjct: 4 RGSTGIKPFQCP--DCDRSFSRSDHLALHRKRH 34
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.69, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK + + S L H R HTGEKP
Sbjct: 18 CGKAFARKSTLIMHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
E+ Y+C CG FAR L H R HTG++P
Sbjct: 10 ERHYECS--ECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 264 TGEKPYQCKWKGCGWKFARSDELTRHFRKHTGD 296
T EKPY+C CG F R+ +L H R H+G+
Sbjct: 8 TREKPYECSE--CGKAFIRNSQLIVHQRTHSGE 38
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 246 CGKTYTKSSHLKAHLRTHTGE 266
CGK + ++S L H RTH+GE
Sbjct: 18 CGKAFIRNSQLIVHQRTHSGE 38
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK +T+ S L H + HTGEKP
Sbjct: 18 CGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.83, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY+C+ CG F S L +H H+G+RP
Sbjct: 10 EKPYKCQV--CGKAFRVSSHLVQHHSVHSGERP 40
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK + SSHL H H+GE+P
Sbjct: 18 CGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 261 RTHTGEKPYQCKWKGCGWKFARSDELTRH-FRKHT 294
RTH+GEKPY+C C +F +S + H +KHT
Sbjct: 8 RTHSGEKPYECYI--CHARFTQSGTMKMHILQKHT 40
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
E PY+C CG F+R +L H R H G++P
Sbjct: 10 ENPYECHE--CGKAFSRKYQLISHQRTHAGEKP 40
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK +++ L +H RTH GEKP
Sbjct: 18 CGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK +T S+L H + HTGEKP
Sbjct: 18 CGKAFTDRSNLIKHQKIHTGEKP 40
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
E+PY C CG F L +H + HTG++P
Sbjct: 10 ERPYICTV--CGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 31.2 bits (69), Expect = 0.92, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPY 269
CGK + HL H +H+GEKPY
Sbjct: 18 CGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 31.2 bits (69), Expect = 0.95, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 264 TGEKPYQCKWKGCGWKFARSDELTRHFRKHTGD 296
+GEKPY C+ CG F +S L+ H R HTG+
Sbjct: 6 SGEKPYVCQ--ECGKAFTQSSCLSIHRRVHTGE 36
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 246 CGKTYTKSSHLKAHLRTHTGE 266
CGK +T+SS L H R HTGE
Sbjct: 16 CGKAFTQSSCLSIHRRVHTGE 36
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 261 RTHTGEKPYQCKWKGCGWKFARSDELTRHFRKH 293
RTHTGEKPY C C F + L HF+++
Sbjct: 8 RTHTGEKPYACSH--CDKTFRQKQLLDMHFKRY 38
>pdb|1BHI|A Chain A, Structure Of Transactivation Domain Of Cre-Bp1ATF-2, Nmr,
20 Structures
Length = 38
Score = 31.2 bits (69), Expect = 1.0, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 264 TGEKPYQCKWKGCGWKFARSDELTRHFRKH 293
+ +KP+ C GCG +F D L H KH
Sbjct: 2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
Score = 28.9 bits (63), Expect = 5.4, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 241 CFHPGCGKTYTKSSHLKAHLRTH 263
C PGCG+ +T HL H H
Sbjct: 9 CTAPGCGQRFTNEDHLAVHKHKH 31
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKP++C CG F+R L H + HTG++P
Sbjct: 10 EKPFKCVE--CGKGFSRRSALNVHHKLHTGEKP 40
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK +++ S L H + HTGEKP
Sbjct: 18 CGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRK 292
H C P CG+++ + HLR + + CK+ C F S LTRH K
Sbjct: 29 HLC--PVCGESFASKGAQERHLRLLHAAQVFPCKY--CPATFYSSPGLTRHINK 78
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK +T S+L H + HTGEKP
Sbjct: 18 CGKAFTDRSNLFTHQKIHTGEKP 40
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY+C CG F L H + HTG++P
Sbjct: 10 EKPYRCAE--CGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY+C CG F+ L+ H R H+G +P
Sbjct: 10 EKPYECSV--CGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY+C CG F+ LT H HTG +P
Sbjct: 10 EKPYECNQ--CGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK + ++S+ H R HTGEKP
Sbjct: 18 CGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK + S L H R+HTGEKP
Sbjct: 18 CGKAFKTKSSLICHRRSHTGEKP 40
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
++PY+C CG F L H R HTG++P
Sbjct: 10 QRPYECIE--CGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKP++C+ CG F+ + +L H R HTG+ P
Sbjct: 10 EKPHECRE--CGKSFSFNSQLIVHQRIHTGENP 40
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK+++ +S L H R HTGE P
Sbjct: 18 CGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEK 267
CGK + + SHL HLR H+ EK
Sbjct: 18 CGKGFGRRSHLAGHLRLHSREK 39
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EK Y CK CG F+R+ L +H R H+G++P
Sbjct: 10 EKLYNCKE--CGKSFSRAPCLLKHERLHSGEKP 40
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK+++++ L H R H+GEKP
Sbjct: 18 CGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 264 TGEKPYQCKWKGCGWKFARSDELTRHFRKHTGD 296
+GEKPY C CG F R H R HTG+
Sbjct: 6 SGEKPYVCT--ECGKAFIRKSHFITHERIHTGE 36
Score = 29.6 bits (65), Expect = 3.0, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 246 CGKTYTKSSHLKAHLRTHTGE 266
CGK + + SH H R HTGE
Sbjct: 16 CGKAFIRKSHFITHERIHTGE 36
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 246 CGKTYTKSSHLKAHLRTHTGE 266
CGK + S+HL HLR HT E
Sbjct: 18 CGKAFVLSAHLNQHLRVHTQE 38
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHT 294
EKPY C CG F S L +H R HT
Sbjct: 10 EKPYSCNV--CGKAFVLSAHLNQHLRVHT 36
>pdb|1NCS|A Chain A, Nmr Study Of Swi5 Zinc Finger Domain 1
Length = 47
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 241 CFHPGCGKTYTKSSHLKAHLRTHTGEK 267
C PGC KT+ + ++++H++TH ++
Sbjct: 21 CLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 264 TGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDR 297
+GEKPY C CG F+ L H R HTG++
Sbjct: 6 SGEKPYGCN--ECGKDFSSKSYLIVHQRIHTGEK 37
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEK 267
CGK ++ S+L H R HTGEK
Sbjct: 16 CGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY+C C F+ LT+H R H+G++P
Sbjct: 10 EKPYECDV--CRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGKT++ S+HL H H GE P
Sbjct: 18 CGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
C K + S+L H RTHTGEKP
Sbjct: 18 CQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|1ZFD|A Chain A, Swi5 Zinc Finger Domain 2, Nmr, 45 Structures
Length = 32
Score = 30.0 bits (66), Expect = 2.2, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKH 293
++PY C GC F R+ +L RH + H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.0 bits (66), Expect = 2.3, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY C+ CG +F L H R HTG P
Sbjct: 9 EKPYPCEI--CGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 264 TGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
+GEKPY C CG F +L H HTG +P
Sbjct: 6 SGEKPYSCNE--CGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY+C CG F LT H HTG++P
Sbjct: 10 EKPYKCNE--CGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY+C+ CG +F + L H HTG P
Sbjct: 9 EKPYKCE--TCGARFVQVAHLRAHVLIHTGSGP 39
Score = 29.6 bits (65), Expect = 3.0, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CG + + +HL+AH+ HTG P
Sbjct: 17 CGARFVQVAHLRAHVLIHTGSGP 39
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 2.6, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK ++ L H R HTGEKP
Sbjct: 18 CGKAFSDHIGLNQHRRIHTGEKP 40
Score = 28.9 bits (63), Expect = 4.9, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKP+ C CG F+ L +H R HTG++P
Sbjct: 10 EKPFDCI--DCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 29.6 bits (65), Expect = 2.6, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 264 TGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
+G++ Y+C+ CG F + LT H R HTG P
Sbjct: 6 SGQRVYECQ--ECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 307 NPSIKEGKDLAATAKCPSADTSQPFKTWATVVSTYNFTRSTCHLILQAEIGVSLKIVPS 365
P+++EG+ L A C + + P TW T V +RS H A + +VPS
Sbjct: 125 GPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSFKH-SRSAAVTSEFHLVPS 182
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK +T ++L H + HTGE+P
Sbjct: 18 CGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY C K CG F + L +H R H+G++P
Sbjct: 10 EKPYNC--KECGKSFRWASCLLKHQRVHSGEKP 40
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK++ +S L H R H+GEKP
Sbjct: 18 CGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 2.8, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK + + S L H R H GEKP
Sbjct: 18 CGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDR 297
EKPY+C CG F R L H + HTG+R
Sbjct: 10 EKPYKCS--DCGKAFTRKSGLHIHQQSHTGER 39
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEK 267
CGK +T+ S L H ++HTGE+
Sbjct: 18 CGKAFTRKSGLHIHQQSHTGER 39
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
KPYQC CG F+ S LT+H+ HT ++P
Sbjct: 11 KPYQCS--ECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 246 CGKTYTKSSHLKAHLRTHTGE 266
CGK + S+L H RTHTGE
Sbjct: 18 CGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY+C C F LT H R HTG++P
Sbjct: 10 EKPYKCDV--CHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 256 LKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGD 296
L+ H R H ++P++C + C + + L++H +K GD
Sbjct: 25 LRIHERIHCTDRPFKCNY--CSFDTKQPSNLSKHMKKFHGD 63
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTG 295
E PY+C CG F+R D+L H + H+G
Sbjct: 10 ENPYECCE--CGKVFSRKDQLVSHQKTHSG 37
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 28.9 bits (63), Expect = 4.5, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 264 TGEKPYQCKWKGCGWKFARSDELTRHFRKHTGD 296
+G+KPY C CG F +L H R HTG+
Sbjct: 6 SGQKPYVCN--ECGKAFGLKSQLIIHERIHTGE 36
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.9 bits (63), Expect = 4.6, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEK 267
C + + + HLK H R+HT EK
Sbjct: 8 CTRAFARQEHLKRHYRSHTNEK 29
Score = 27.7 bits (60), Expect = 9.4, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 276 CGWKFARSDELTRHFRKHTGDR 297
C FAR + L RH+R HT ++
Sbjct: 8 CTRAFARQEHLKRHYRSHTNEK 29
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
KPY C CG F+ LT H HTG++P
Sbjct: 11 KPYMCNE--CGKAFSVYSSLTTHQVIHTGEKP 40
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK ++ S L H HTGEKP
Sbjct: 18 CGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|1ZNM|A Chain A, A Zinc Finger With An Artificial Beta-Turn, Original
Sequence Taken From The Third Zinc Finger Domain Of The
Human Transcriptional Repressor Protein Yy1 (Ying And
Yang 1, A Delta Transcription Factor), Nmr, 34
Structures
Length = 28
Score = 28.9 bits (63), Expect = 5.1, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 268 PYQCKWKGCGWKFARSDELTRHFRKHTG 295
P+QC + CG +F+ L H + HTG
Sbjct: 1 PFQCTFXCCGKRFSLDFNLKTHVKIHTG 28
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 5.4, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDR 297
EKPY+C CG + R +L H R HTG++
Sbjct: 10 EKPYKC--VECGKGYKRRLDLDFHQRVHTGEK 39
Score = 28.5 bits (62), Expect = 5.8, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEK 267
CGK Y + L H R HTGEK
Sbjct: 18 CGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK + +S +H R+H+GEKP
Sbjct: 18 CGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFR-KHTGDRP 298
+KPY+C CG F ++ L RH+R HTG++P
Sbjct: 10 KKPYEC--IECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK + S L H TH+GEKP
Sbjct: 18 CGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
C KT++ S L H R+HTG KP
Sbjct: 18 CAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKP+QC K CG F+ S L +H R H P
Sbjct: 10 EKPFQC--KECGMNFSWSCSLFKHLRSHERTDP 40
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 7.2, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY+C + CG F +L H HTG++P
Sbjct: 10 EKPYKC--EECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEK 267
CGK++T S L+ H + HTGE+
Sbjct: 18 CGKSFTWKSRLRIHQKCHTGER 39
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
EKPY+C+ CG + L H + HTG+RP
Sbjct: 10 EKPYKCEK--CGKGYNSKFNLDMHQKVHTGERP 40
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
CGK Y +L H + HTGE+P
Sbjct: 18 CGKGYNSKFNLDMHQKVHTGERP 40
>pdb|1O4U|A Chain A, Crystal Structure Of A Nicotinate Nucleotide
Pyrophosphorylase (Tm1645) From Thermotoga Maritima At
2.50 A Resolution
pdb|1O4U|B Chain B, Crystal Structure Of A Nicotinate Nucleotide
Pyrophosphorylase (Tm1645) From Thermotoga Maritima At
2.50 A Resolution
Length = 285
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 9 LLGPPAPCQVSPVSICNPTLGPTVMLSSSSQIVKEE---YGFPTAKYVEEPQLNQNEEFV 65
+L +P +V +S + P V++ S I +E Y F T + +L E FV
Sbjct: 218 MLDNLSPEEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVISSSRLTLQEVFV 277
Query: 66 DLDMLI 71
DL + I
Sbjct: 278 DLSLEI 283
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 27.7 bits (60), Expect = 9.7, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKH 293
KPY C+ CG +F +S +L H R H
Sbjct: 1 KPYVCE--RCGKRFVQSSQLANHIRHH 25
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,711,403
Number of Sequences: 62578
Number of extensions: 414272
Number of successful extensions: 1565
Number of sequences better than 100.0: 167
Number of HSP's better than 100.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1102
Number of HSP's gapped (non-prelim): 368
length of query: 371
length of database: 14,973,337
effective HSP length: 100
effective length of query: 271
effective length of database: 8,715,537
effective search space: 2361910527
effective search space used: 2361910527
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)