Query psy16849
Match_columns 371
No_of_seqs 309 out of 2168
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 23:37:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16849.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16849hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2462|consensus 99.8 4.8E-20 1.1E-24 173.8 11.3 122 217-344 127-259 (279)
2 KOG2462|consensus 99.8 7.7E-20 1.7E-24 172.4 3.5 101 217-321 158-264 (279)
3 KOG3576|consensus 99.4 9.7E-14 2.1E-18 126.1 3.6 101 220-324 117-236 (267)
4 KOG3576|consensus 99.4 3E-13 6.6E-18 122.9 6.2 103 242-348 119-239 (267)
5 KOG1074|consensus 99.4 7.6E-13 1.7E-17 139.7 9.2 46 277-324 612-657 (958)
6 KOG3623|consensus 99.3 1.2E-12 2.5E-17 136.4 5.4 80 240-323 894-973 (1007)
7 KOG3608|consensus 99.3 5.7E-13 1.2E-17 129.4 1.1 144 220-371 237-388 (467)
8 KOG3608|consensus 99.0 3.5E-11 7.5E-16 117.1 0.6 124 222-352 209-343 (467)
9 KOG3623|consensus 99.0 1.3E-10 2.9E-15 121.3 3.0 98 243-344 213-325 (1007)
10 KOG1074|consensus 98.8 1.8E-09 3.9E-14 114.7 1.8 75 246-324 611-692 (958)
11 PHA00733 hypothetical protein 98.6 4.3E-08 9.4E-13 84.6 3.7 75 246-327 46-126 (128)
12 PHA02768 hypothetical protein; 98.4 9.6E-08 2.1E-12 70.2 2.1 44 268-317 5-48 (55)
13 PLN03086 PRLI-interacting fact 98.3 6.6E-07 1.4E-11 93.9 6.3 104 225-340 440-553 (567)
14 PF13465 zf-H2C2_2: Zinc-finge 98.3 2.1E-07 4.6E-12 58.3 1.4 26 285-312 1-26 (26)
15 PLN03086 PRLI-interacting fact 98.2 1.8E-06 3.9E-11 90.6 5.5 96 217-321 450-561 (567)
16 PF13465 zf-H2C2_2: Zinc-finge 98.0 3.2E-06 6.9E-11 52.9 1.9 26 255-282 1-26 (26)
17 PHA02768 hypothetical protein; 97.9 7.1E-06 1.5E-10 60.4 2.0 41 243-287 8-48 (55)
18 PHA00733 hypothetical protein 97.8 9.1E-06 2E-10 70.2 2.1 74 265-342 37-120 (128)
19 COG5189 SFP1 Putative transcri 97.7 1.6E-05 3.4E-10 77.2 1.6 55 265-321 346-419 (423)
20 PHA00616 hypothetical protein 97.7 1.5E-05 3.3E-10 56.0 1.1 34 268-303 1-34 (44)
21 PHA00732 hypothetical protein 97.6 5E-05 1.1E-09 60.2 3.4 47 268-324 1-48 (79)
22 KOG3993|consensus 97.3 3.1E-05 6.8E-10 77.7 -1.1 75 246-324 273-380 (500)
23 KOG3993|consensus 97.1 0.00011 2.5E-09 73.7 -0.4 73 220-294 267-380 (500)
24 PHA00616 hypothetical protein 96.8 0.00031 6.7E-09 49.4 0.2 29 298-328 1-29 (44)
25 PF00096 zf-C2H2: Zinc finger, 96.7 0.0003 6.5E-09 42.1 -0.5 22 299-322 1-22 (23)
26 PF13912 zf-C2H2_6: C2H2-type 96.5 0.0012 2.5E-08 41.1 1.1 25 298-324 1-25 (27)
27 PF13894 zf-C2H2_4: C2H2-type 96.4 0.00073 1.6E-08 40.1 -0.1 23 299-323 1-23 (24)
28 PF05605 zf-Di19: Drought indu 96.4 0.0032 7E-08 46.0 3.1 50 268-324 2-53 (54)
29 PF00096 zf-C2H2: Zinc finger, 96.3 0.0023 5.1E-08 38.1 1.5 23 269-293 1-23 (23)
30 COG5189 SFP1 Putative transcri 96.0 0.0081 1.8E-07 58.8 4.7 53 237-291 348-419 (423)
31 PHA00732 hypothetical protein 96.0 0.0062 1.3E-07 48.3 3.0 45 243-295 4-49 (79)
32 PF12756 zf-C2H2_2: C2H2 type 95.3 0.0059 1.3E-07 48.7 0.7 71 244-323 3-73 (100)
33 PF13894 zf-C2H2_4: C2H2-type 95.1 0.015 3.3E-07 34.2 1.9 23 269-293 1-23 (24)
34 smart00355 ZnF_C2H2 zinc finge 94.8 0.013 2.9E-07 34.8 1.0 24 299-324 1-24 (26)
35 PF13912 zf-C2H2_6: C2H2-type 94.7 0.02 4.3E-07 35.4 1.6 25 268-294 1-25 (27)
36 PF12756 zf-C2H2_2: C2H2 type 94.6 0.022 4.9E-07 45.3 2.2 69 222-293 1-73 (100)
37 PRK04860 hypothetical protein; 94.5 0.02 4.2E-07 51.4 1.7 40 268-315 119-158 (160)
38 COG5048 FOG: Zn-finger [Genera 93.7 0.028 6E-07 55.3 1.3 74 242-315 291-368 (467)
39 smart00355 ZnF_C2H2 zinc finge 93.6 0.065 1.4E-06 31.7 2.3 24 269-294 1-24 (26)
40 KOG2231|consensus 93.4 0.076 1.6E-06 57.2 4.0 52 270-327 184-239 (669)
41 PF05605 zf-Di19: Drought indu 93.4 0.12 2.7E-06 37.6 4.0 47 243-294 5-53 (54)
42 PF09237 GAGA: GAGA factor; I 93.3 0.053 1.1E-06 39.4 1.8 32 265-298 21-52 (54)
43 COG5048 FOG: Zn-finger [Genera 92.8 0.052 1.1E-06 53.3 1.7 64 267-332 288-355 (467)
44 PF12874 zf-met: Zinc-finger o 92.3 0.045 9.7E-07 33.2 0.2 22 299-322 1-22 (25)
45 PF09237 GAGA: GAGA factor; I 91.3 0.057 1.2E-06 39.2 -0.1 32 293-326 19-50 (54)
46 PF13909 zf-H2C2_5: C2H2-type 91.2 0.04 8.7E-07 33.2 -0.8 22 299-323 1-22 (24)
47 PF12171 zf-C2H2_jaz: Zinc-fin 90.8 0.15 3.2E-06 31.7 1.4 22 299-322 2-23 (27)
48 KOG2231|consensus 90.6 0.21 4.6E-06 53.9 3.3 110 221-342 100-233 (669)
49 KOG4173|consensus 89.6 0.074 1.6E-06 49.3 -0.9 80 240-324 81-170 (253)
50 PRK04860 hypothetical protein; 87.8 0.3 6.6E-06 43.8 1.8 40 239-284 118-157 (160)
51 PF12874 zf-met: Zinc-finger o 87.6 0.34 7.3E-06 29.2 1.4 23 269-293 1-23 (25)
52 PF13909 zf-H2C2_5: C2H2-type 85.5 0.56 1.2E-05 28.1 1.6 23 269-294 1-23 (24)
53 smart00451 ZnF_U1 U1-like zinc 83.1 0.81 1.7E-05 29.7 1.6 23 298-322 3-25 (35)
54 KOG1146|consensus 80.9 0.54 1.2E-05 53.9 0.3 72 246-321 442-539 (1406)
55 PF12171 zf-C2H2_jaz: Zinc-fin 80.3 0.87 1.9E-05 28.2 1.0 22 269-292 2-23 (27)
56 COG5236 Uncharacterized conser 79.0 0.56 1.2E-05 46.7 -0.3 20 270-291 222-241 (493)
57 PF13913 zf-C2HC_2: zinc-finge 76.9 1.4 3E-05 27.1 1.1 19 300-321 4-22 (25)
58 KOG4173|consensus 69.3 1.3 2.8E-05 41.3 -0.5 69 267-340 78-165 (253)
59 smart00451 ZnF_U1 U1-like zinc 63.8 5.6 0.00012 25.6 1.9 23 268-292 3-25 (35)
60 KOG4124|consensus 62.8 1.8 3.9E-05 43.3 -0.9 57 266-324 347-422 (442)
61 KOG2893|consensus 58.6 3 6.4E-05 39.8 -0.2 42 271-320 13-54 (341)
62 COG5236 Uncharacterized conser 56.5 3.4 7.4E-05 41.4 -0.2 99 236-340 149-270 (493)
63 KOG2893|consensus 54.2 4.9 0.00011 38.4 0.5 42 246-293 16-58 (341)
64 PF02892 zf-BED: BED zinc fing 45.7 11 0.00024 25.8 1.1 24 296-321 14-41 (45)
65 KOG2186|consensus 45.7 11 0.00023 36.4 1.3 50 269-325 4-53 (276)
66 KOG2482|consensus 42.5 26 0.00056 35.3 3.4 16 246-261 201-216 (423)
67 KOG2071|consensus 42.1 64 0.0014 34.7 6.4 18 294-313 509-526 (579)
68 smart00614 ZnF_BED BED zinc fi 41.1 14 0.00031 26.2 1.1 20 300-321 20-44 (50)
69 COG4957 Predicted transcriptio 37.7 7.5 0.00016 34.0 -1.0 36 300-340 78-113 (148)
70 COG4049 Uncharacterized protei 34.0 18 0.00038 27.0 0.6 26 294-321 13-38 (65)
71 PF12013 DUF3505: Protein of u 33.3 20 0.00044 29.5 0.9 26 298-325 80-109 (109)
72 KOG1146|consensus 32.5 15 0.00033 42.8 0.1 92 219-326 1259-1354(1406)
73 PF05443 ROS_MUCR: ROS/MUCR tr 29.9 29 0.00063 30.2 1.4 24 242-268 74-97 (132)
74 PF09538 FYDLN_acid: Protein o 29.3 46 0.001 27.9 2.4 15 267-283 25-39 (108)
75 KOG4377|consensus 28.4 53 0.0011 33.9 3.1 79 240-321 273-370 (480)
76 TIGR00622 ssl1 transcription f 27.0 1.4E+02 0.0031 25.3 4.9 76 243-324 18-105 (112)
77 PF05443 ROS_MUCR: ROS/MUCR tr 26.6 17 0.00037 31.6 -0.6 35 298-337 72-106 (132)
78 COG1198 PriA Primosomal protei 23.2 64 0.0014 35.8 2.8 28 262-308 456-483 (730)
79 KOG2785|consensus 22.5 71 0.0015 32.6 2.7 67 246-321 172-241 (390)
80 PF15269 zf-C2H2_7: Zinc-finge 21.9 44 0.00094 23.9 0.8 24 299-324 21-44 (54)
81 cd00350 rubredoxin_like Rubred 21.5 62 0.0013 21.0 1.4 24 269-308 2-25 (33)
82 PF09986 DUF2225: Uncharacteri 21.4 34 0.00073 32.0 0.2 43 267-313 4-61 (214)
83 PF02176 zf-TRAF: TRAF-type zi 20.8 36 0.00078 24.5 0.2 44 267-311 8-53 (60)
No 1
>KOG2462|consensus
Probab=99.82 E-value=4.8e-20 Score=173.79 Aligned_cols=122 Identities=26% Similarity=0.443 Sum_probs=108.0
Q ss_pred cCCCCCCCcCCCCCCCchhhcccccc-----------cCCCCCcccCchhHHHHHhhhcCCCccccccCCCCCcccChhH
Q psy16849 217 INTPSKTKTRERRSGSRKKLTSHACF-----------HPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDE 285 (371)
Q Consensus 217 ~~~p~~c~~c~~~~~~~~~l~~H~c~-----------h~~Cgk~F~~~s~L~~H~r~HtgeKpf~C~~~~CgK~F~~ks~ 285 (371)
....++|..|++...+...|.+|+.. |+.|||.|..-..|+.|+|+|+ -+++|.+ |||.|.+.+-
T Consensus 127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~i--CGKaFSRPWL 202 (279)
T KOG2462|consen 127 KHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGI--CGKAFSRPWL 202 (279)
T ss_pred cCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCccccc--ccccccchHH
Confidence 45568999999999999988888643 4559999999999999999998 7899977 9999999999
Q ss_pred HHHHhhhhcCCCCccCCCCCCCCCCCCcHHHHhhccCCCCCCCCCCCcccccccccccc
Q psy16849 286 LTRHFRKHTGDRPFQCKPNLVNPSIKEGKDLAATAKCPSADTSQPFKTWATVVSTYNFT 344 (371)
Q Consensus 286 L~~H~r~HtgeKPykC~~~~C~ksF~~~~~L~~H~k~h~~~c~~~fk~~~~l~~h~~~~ 344 (371)
|+.|+|+|+|||||.|.. |+|+|..+++|+.||++|.+.+.+.|.+|++-|.=..++
T Consensus 203 LQGHiRTHTGEKPF~C~h--C~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyL 259 (279)
T KOG2462|consen 203 LQGHIRTHTGEKPFSCPH--CGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYL 259 (279)
T ss_pred hhcccccccCCCCccCCc--ccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHH
Confidence 999999999999999999 999999999999999999998888888887776544333
No 2
>KOG2462|consensus
Probab=99.78 E-value=7.7e-20 Score=172.44 Aligned_cols=101 Identities=30% Similarity=0.481 Sum_probs=94.6
Q ss_pred cCCCCCCCcCCCCCCCchhhcccccccC------CCCCcccCchhHHHHHhhhcCCCccccccCCCCCcccChhHHHHHh
Q psy16849 217 INTPSKTKTRERRSGSRKKLTSHACFHP------GCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHF 290 (371)
Q Consensus 217 ~~~p~~c~~c~~~~~~~~~l~~H~c~h~------~Cgk~F~~~s~L~~H~r~HtgeKpf~C~~~~CgK~F~~ks~L~~H~ 290 (371)
..+.+.|+.|++.+.+-..|+.|+.+|. .|||.|.+.+-|+.|+|+|+|||||.|.+ |+|+|..+++|+.||
T Consensus 158 s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~h--C~kAFADRSNLRAHm 235 (279)
T KOG2462|consen 158 SKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPH--CGKAFADRSNLRAHM 235 (279)
T ss_pred ccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCc--ccchhcchHHHHHHH
Confidence 3667999999999999999998876654 49999999999999999999999999966 999999999999999
Q ss_pred hhhcCCCCccCCCCCCCCCCCCcHHHHhhcc
Q psy16849 291 RKHTGDRPFQCKPNLVNPSIKEGKDLAATAK 321 (371)
Q Consensus 291 r~HtgeKPykC~~~~C~ksF~~~~~L~~H~k 321 (371)
++|.+.|+|+|.. |+|+|.+++.|.+|..
T Consensus 236 QTHS~~K~~qC~~--C~KsFsl~SyLnKH~E 264 (279)
T KOG2462|consen 236 QTHSDVKKHQCPR--CGKSFALKSYLNKHSE 264 (279)
T ss_pred HhhcCCccccCcc--hhhHHHHHHHHHHhhh
Confidence 9999999999999 9999999999999986
No 3
>KOG3576|consensus
Probab=99.41 E-value=9.7e-14 Score=126.10 Aligned_cols=101 Identities=26% Similarity=0.468 Sum_probs=58.0
Q ss_pred CCCCCcCCCCCCCchhhccccccc--------CCCCCcccCchhHHHHHhhhcCCCccccccCCCCCcccChhHHHHHhh
Q psy16849 220 PSKTKTRERRSGSRKKLTSHACFH--------PGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFR 291 (371)
Q Consensus 220 p~~c~~c~~~~~~~~~l~~H~c~h--------~~Cgk~F~~~s~L~~H~r~HtgeKpf~C~~~~CgK~F~~ks~L~~H~r 291 (371)
.+.|..|+++|...+-|.+|+.-| ..|||.|.....|++|+|+|+|.+||+|.. |+|+|.++-.|..|.+
T Consensus 117 ~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~--c~kaftqrcsleshl~ 194 (267)
T KOG3576|consen 117 SFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSL--CEKAFTQRCSLESHLK 194 (267)
T ss_pred eeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhh--hhHHHHhhccHHHHHH
Confidence 456666666666655555554222 116666666666666666666666666644 6666666666666654
Q ss_pred h-hc----------CCCCccCCCCCCCCCCCCcHHHHhhccCCC
Q psy16849 292 K-HT----------GDRPFQCKPNLVNPSIKEGKDLAATAKCPS 324 (371)
Q Consensus 292 ~-Ht----------geKPykC~~~~C~ksF~~~~~L~~H~k~h~ 324 (371)
. |. .+|-|.|+. ||.+-.+...+..|++.|+
T Consensus 195 kvhgv~~~yaykerr~kl~vced--cg~t~~~~e~~~~h~~~~h 236 (267)
T KOG3576|consen 195 KVHGVQHQYAYKERRAKLYVCED--CGYTSERPEVYYLHLKLHH 236 (267)
T ss_pred HHcCchHHHHHHHhhhheeeecc--cCCCCCChhHHHHHHHhcC
Confidence 2 22 134566666 6655666666666666655
No 4
>KOG3576|consensus
Probab=99.40 E-value=3e-13 Score=122.90 Aligned_cols=103 Identities=24% Similarity=0.400 Sum_probs=86.8
Q ss_pred ccCCCCCcccCchhHHHHHhhhcCCCccccccCCCCCcccChhHHHHHhhhhcCCCCccCCCCCCCCCCCCcHHHHhhcc
Q psy16849 242 FHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCKPNLVNPSIKEGKDLAATAK 321 (371)
Q Consensus 242 ~h~~Cgk~F~~~s~L~~H~r~HtgeKpf~C~~~~CgK~F~~ks~L~~H~r~HtgeKPykC~~~~C~ksF~~~~~L~~H~k 321 (371)
.|..|+|.|.-..-|.+|+..|...|.|.|.+ |||.|..--+|++|+|+|+|.+||+|.. |+|+|.....|..|++
T Consensus 119 tCrvCgK~F~lQRmlnrh~kch~~vkr~lct~--cgkgfndtfdlkrh~rthtgvrpykc~~--c~kaftqrcsleshl~ 194 (267)
T KOG3576|consen 119 TCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTF--CGKGFNDTFDLKRHTRTHTGVRPYKCSL--CEKAFTQRCSLESHLK 194 (267)
T ss_pred eeehhhhhhhHHHHHHHHhhhccHHHHHHHhh--ccCcccchhhhhhhhccccCccccchhh--hhHHHHhhccHHHHHH
Confidence 34559999999999999999999999999977 9999999999999999999999999999 9999999999999986
Q ss_pred CCC------------------CCCCCCCCcccccccccccccccc
Q psy16849 322 CPS------------------ADTSQPFKTWATVVSTYNFTRSTC 348 (371)
Q Consensus 322 ~h~------------------~~c~~~fk~~~~l~~h~~~~~~~~ 348 (371)
.-| .+|++.-.+...++.|+..++-..
T Consensus 195 kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~S 239 (267)
T KOG3576|consen 195 KVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFS 239 (267)
T ss_pred HHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCC
Confidence 433 345555555555666666655444
No 5
>KOG1074|consensus
Probab=99.39 E-value=7.6e-13 Score=139.73 Aligned_cols=46 Identities=28% Similarity=0.499 Sum_probs=35.4
Q ss_pred CCcccChhHHHHHhhhhcCCCCccCCCCCCCCCCCCcHHHHhhccCCC
Q psy16849 277 GWKFARSDELTRHFRKHTGDRPFQCKPNLVNPSIKEGKDLAATAKCPS 324 (371)
Q Consensus 277 gK~F~~ks~L~~H~r~HtgeKPykC~~~~C~ksF~~~~~L~~H~k~h~ 324 (371)
-+...-++.|+.|+|+|+|||||+|++ ||++|.++.+|+.||-.|-
T Consensus 612 ~rVlSC~saLqmHyrtHtGERPFkCKi--CgRAFtTkGNLkaH~~vHk 657 (958)
T KOG1074|consen 612 LRVLSCPSALQMHYRTHTGERPFKCKI--CGRAFTTKGNLKAHMSVHK 657 (958)
T ss_pred eecccchhhhhhhhhcccCcCcccccc--ccchhccccchhhcccccc
Confidence 333333333888888888888888888 8888888888888887665
No 6
>KOG3623|consensus
Probab=99.32 E-value=1.2e-12 Score=136.41 Aligned_cols=80 Identities=30% Similarity=0.582 Sum_probs=74.8
Q ss_pred ccccCCCCCcccCchhHHHHHhhhcCCCccccccCCCCCcccChhHHHHHhhhhcCCCCccCCCCCCCCCCCCcHHHHhh
Q psy16849 240 ACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCKPNLVNPSIKEGKDLAAT 319 (371)
Q Consensus 240 ~c~h~~Cgk~F~~~s~L~~H~r~HtgeKpf~C~~~~CgK~F~~ks~L~~H~r~HtgeKPykC~~~~C~ksF~~~~~L~~H 319 (371)
+..|..|+|+|...+.|.+|.--|+|.+||+|.+ |.|.|+.+.+|..|+|.|.|||||+|.. |+|+|........|
T Consensus 894 myaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~i--CkKAFKHKHHLtEHkRLHSGEKPfQCdK--ClKRFSHSGSYSQH 969 (1007)
T KOG3623|consen 894 MYACDQCDKAFQKQSSLARHKYEHSGQRPYQCII--CKKAFKHKHHLTEHKRLHSGEKPFQCDK--CLKRFSHSGSYSQH 969 (1007)
T ss_pred cchHHHHHHHHHhhHHHHHhhhhhcCCCCcccch--hhHhhhhhhhhhhhhhhccCCCcchhhh--hhhhcccccchHhh
Confidence 3445669999999999999999999999999977 9999999999999999999999999999 99999999999999
Q ss_pred ccCC
Q psy16849 320 AKCP 323 (371)
Q Consensus 320 ~k~h 323 (371)
|.-.
T Consensus 970 MNHR 973 (1007)
T KOG3623|consen 970 MNHR 973 (1007)
T ss_pred hccc
Confidence 9743
No 7
>KOG3608|consensus
Probab=99.29 E-value=5.7e-13 Score=129.44 Aligned_cols=144 Identities=22% Similarity=0.334 Sum_probs=111.9
Q ss_pred CCCCCcCCCCCCCchhhcccccc------cCCCCCcccCchhHHHHHh-hhcCCCccccccCCCCCcccChhHHHHHhhh
Q psy16849 220 PSKTKTRERRSGSRKKLTSHACF------HPGCGKTYTKSSHLKAHLR-THTGEKPYQCKWKGCGWKFARSDELTRHFRK 292 (371)
Q Consensus 220 p~~c~~c~~~~~~~~~l~~H~c~------h~~Cgk~F~~~s~L~~H~r-~HtgeKpf~C~~~~CgK~F~~ks~L~~H~r~ 292 (371)
+|.|..|.+.|.+++.|+.|+.. |+-|+......+.|..|++ .|...|||+|+ .|++.|.+.++|.+|..+
T Consensus 237 ~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd--~Cd~~c~~esdL~kH~~~ 314 (467)
T KOG3608|consen 237 SFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCD--ECDTRCVRESDLAKHVQV 314 (467)
T ss_pred chHHHHHHHHHhHHHHHHHHHHHhhhcccccccccCCCChHHHHHHHHhhhccCCCcccc--chhhhhccHHHHHHHHHh
Confidence 78899999999999888888644 3448888889999999988 78889999994 499999999999999998
Q ss_pred hcCCCCccCCCCCCCCCCCCcHHHHhhccCCCCC-CCCCCCccccccccccccccccccchhccccCCCccCCCCCCCCC
Q psy16849 293 HTGDRPFQCKPNLVNPSIKEGKDLAATAKCPSAD-TSQPFKTWATVVSTYNFTRSTCHLILQAEIGVSLKIVPSSHSRTK 371 (371)
Q Consensus 293 HtgeKPykC~~~~C~ksF~~~~~L~~H~k~h~~~-c~~~fk~~~~l~~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 371 (371)
|. +--|+|+.+.|..+|+....|++|++-++.+ .+.. +.+..+-+-|+.... +..+....|...+|++|+||.
T Consensus 315 HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~---Y~CH~Cdr~ft~G~~--L~~HL~kkH~f~~PsGh~RFt 388 (467)
T KOG3608|consen 315 HS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPIL---YACHCCDRFFTSGKS--LSAHLMKKHGFRLPSGHKRFT 388 (467)
T ss_pred cc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCc---eeeecchhhhccchh--HHHHHHHhhcccCCCCCCcee
Confidence 88 6679999999999999999999999877633 2222 222222334444444 566677788889999999983
No 8
>KOG3608|consensus
Probab=99.05 E-value=3.5e-11 Score=117.14 Aligned_cols=124 Identities=23% Similarity=0.383 Sum_probs=82.5
Q ss_pred CCCcCCCCCCCchhhccccccc----------CCCCCcccCchhHHHHHhhhcCCCccccccCCCCCcccChhHHHHHhh
Q psy16849 222 KTKTRERRSGSRKKLTSHACFH----------PGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFR 291 (371)
Q Consensus 222 ~c~~c~~~~~~~~~l~~H~c~h----------~~Cgk~F~~~s~L~~H~r~HtgeKpf~C~~~~CgK~F~~ks~L~~H~r 291 (371)
-|..|++-|.++..|-.|.... ..|.|.|.....|..|++.|. .-|+|.+ |+......+.|.+|++
T Consensus 209 ACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHv--n~ykCpl--Cdmtc~~~ssL~~H~r 284 (467)
T KOG3608|consen 209 ACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHV--NCYKCPL--CDMTCSSASSLTTHIR 284 (467)
T ss_pred ecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhh--hcccccc--cccCCCChHHHHHHHH
Confidence 4555555555555554443221 116666777777777777665 4488855 8888888888888888
Q ss_pred -hhcCCCCccCCCCCCCCCCCCcHHHHhhccCCCCCCCCCCCccccccccccccccccccch
Q psy16849 292 -KHTGDRPFQCKPNLVNPSIKEGKDLAATAKCPSADTSQPFKTWATVVSTYNFTRSTCHLIL 352 (371)
Q Consensus 292 -~HtgeKPykC~~~~C~ksF~~~~~L~~H~k~h~~~c~~~fk~~~~l~~h~~~~~~~~~~~~ 352 (371)
.|...|||+|.. |+++|.+.++|.+|+..|+ +.-+.|+.-.+.++-+++.....|++.
T Consensus 285 ~rHs~dkpfKCd~--Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~e 343 (467)
T KOG3608|consen 285 YRHSKDKPFKCDE--CDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLE 343 (467)
T ss_pred hhhccCCCccccc--hhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHH
Confidence 588899999999 9999999999999998777 334444443333433443333333333
No 9
>KOG3623|consensus
Probab=99.01 E-value=1.3e-10 Score=121.34 Aligned_cols=98 Identities=23% Similarity=0.429 Sum_probs=66.8
Q ss_pred cCCCCCcccCchhHHHHHh-hhcC-CCccccccCCCCCcccChhHHHHHhhhhc-------------CCCCccCCCCCCC
Q psy16849 243 HPGCGKTYTKSSHLKAHLR-THTG-EKPYQCKWKGCGWKFARSDELTRHFRKHT-------------GDRPFQCKPNLVN 307 (371)
Q Consensus 243 h~~Cgk~F~~~s~L~~H~r-~Htg-eKpf~C~~~~CgK~F~~ks~L~~H~r~Ht-------------geKPykC~~~~C~ 307 (371)
|+.|.+.+.+...|+.|+. .|.. +-.|.|.+ |...|..+..|.+|+.+|. +.|.|+|.. ||
T Consensus 213 cpycdrgykrltslkeHikyrhekne~nfsC~l--CsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtE--Cg 288 (1007)
T KOG3623|consen 213 CPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCML--CSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTE--CG 288 (1007)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhCCCCCcchh--hhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccc--cc
Confidence 3447777777777777765 4432 34477755 7777777777777777663 246677777 77
Q ss_pred CCCCCcHHHHhhccCCCCCCCCCCCcccccccccccc
Q psy16849 308 PSIKEGKDLAATAKCPSADTSQPFKTWATVVSTYNFT 344 (371)
Q Consensus 308 ksF~~~~~L~~H~k~h~~~c~~~fk~~~~l~~h~~~~ 344 (371)
|+|+.+..|+.|+|+|+|++.+.|..|.+-|.|-.-.
T Consensus 289 KAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSy 325 (1007)
T KOG3623|consen 289 KAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSY 325 (1007)
T ss_pred hhhhhHHHHHhhheeecCCCCcCCcccccccccCCcc
Confidence 7777777777777777777777777766666665544
No 10
>KOG1074|consensus
Probab=98.78 E-value=1.8e-09 Score=114.67 Aligned_cols=75 Identities=29% Similarity=0.598 Sum_probs=71.1
Q ss_pred CCCcccCchhHHHHHhhhcCCCccccccCCCCCcccChhHHHHHhhhhcCCC----CccCC---CCCCCCCCCCcHHHHh
Q psy16849 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDR----PFQCK---PNLVNPSIKEGKDLAA 318 (371)
Q Consensus 246 Cgk~F~~~s~L~~H~r~HtgeKpf~C~~~~CgK~F~~ks~L~~H~r~HtgeK----PykC~---~~~C~ksF~~~~~L~~ 318 (371)
|-++...++.|+.|.|+|+||+||+|.+ ||+.|..+.+|+.|+-+|...- +|.|. + |.+.|...-.|..
T Consensus 611 C~rVlSC~saLqmHyrtHtGERPFkCKi--CgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~i--c~~kftn~V~lpQ 686 (958)
T KOG1074|consen 611 CLRVLSCPSALQMHYRTHTGERPFKCKI--CGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFI--CQKKFTNAVTLPQ 686 (958)
T ss_pred eeecccchhhhhhhhhcccCcCcccccc--ccchhccccchhhcccccccCccccccccCCchhh--hcccccccccccc
Confidence 9999999999999999999999999998 9999999999999999997653 47899 9 9999999999999
Q ss_pred hccCCC
Q psy16849 319 TAKCPS 324 (371)
Q Consensus 319 H~k~h~ 324 (371)
|++.|.
T Consensus 687 hIriH~ 692 (958)
T KOG1074|consen 687 HIRIHL 692 (958)
T ss_pred eEEeec
Confidence 999988
No 11
>PHA00733 hypothetical protein
Probab=98.57 E-value=4.3e-08 Score=84.58 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=60.5
Q ss_pred CCCcccCchhH------HHHHhhhcCCCccccccCCCCCcccChhHHHHHhhhhcCCCCccCCCCCCCCCCCCcHHHHhh
Q psy16849 246 CGKTYTKSSHL------KAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCKPNLVNPSIKEGKDLAAT 319 (371)
Q Consensus 246 Cgk~F~~~s~L------~~H~r~HtgeKpf~C~~~~CgK~F~~ks~L~~H~r~HtgeKPykC~~~~C~ksF~~~~~L~~H 319 (371)
|.+.|.....| ..|+.. .+++||.|.. |++.|.....|..|++.| +++|.|.+ |+++|.....|.+|
T Consensus 46 ~~~~~~~~~~l~~~~~l~~~~~~-~~~kPy~C~~--Cgk~Fss~s~L~~H~r~h--~~~~~C~~--CgK~F~~~~sL~~H 118 (128)
T PHA00733 46 VKTLIYNPQLLDESSYLYKLLTS-KAVSPYVCPL--CLMPFSSSVSLKQHIRYT--EHSKVCPV--CGKEFRNTDSTLDH 118 (128)
T ss_pred HhhhccChhhhcchHHHHhhccc-CCCCCccCCC--CCCcCCCHHHHHHHHhcC--CcCccCCC--CCCccCCHHHHHHH
Confidence 55555554444 444333 4588999965 999999999999999987 46899999 99999999999999
Q ss_pred ccCCCCCC
Q psy16849 320 AKCPSADT 327 (371)
Q Consensus 320 ~k~h~~~c 327 (371)
+...|+.|
T Consensus 119 ~~~~h~~~ 126 (128)
T PHA00733 119 VCKKHNIC 126 (128)
T ss_pred HHHhcCcc
Confidence 99888766
No 12
>PHA02768 hypothetical protein; Provisional
Probab=98.44 E-value=9.6e-08 Score=70.20 Aligned_cols=44 Identities=18% Similarity=0.418 Sum_probs=37.8
Q ss_pred ccccccCCCCCcccChhHHHHHhhhhcCCCCccCCCCCCCCCCCCcHHHH
Q psy16849 268 PYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCKPNLVNPSIKEGKDLA 317 (371)
Q Consensus 268 pf~C~~~~CgK~F~~ks~L~~H~r~HtgeKPykC~~~~C~ksF~~~~~L~ 317 (371)
-|.|+. ||+.|.+.++|..|+++|+ ++|+|.. |++.|.+.+.|-
T Consensus 5 ~y~C~~--CGK~Fs~~~~L~~H~r~H~--k~~kc~~--C~k~f~~~s~l~ 48 (55)
T PHA02768 5 GYECPI--CGEIYIKRKSMITHLRKHN--TNLKLSN--CKRISLRTGEYI 48 (55)
T ss_pred ccCcch--hCCeeccHHHHHHHHHhcC--CcccCCc--ccceecccceeE
Confidence 378955 9999999999999999998 7899999 999998877663
No 13
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.34 E-value=6.6e-07 Score=93.85 Aligned_cols=104 Identities=13% Similarity=0.325 Sum_probs=79.1
Q ss_pred cCCCCCCCchhhcccccccCCCCCcccCchhHHHHHhhhcCCCccccccCCCCCcccChhHHHHHhhhhcCCCCccCCCC
Q psy16849 225 TRERRSGSRKKLTSHACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCKPN 304 (371)
Q Consensus 225 ~c~~~~~~~~~l~~H~c~h~~Cgk~F~~~s~L~~H~r~HtgeKpf~C~~~~CgK~F~~ks~L~~H~r~HtgeKPykC~~~ 304 (371)
.|+..+. +..+..|. .|+.|++.|. ...|..|+++|+ +++.| + ||+.+ .+..|..|+++|.+++++.|.+
T Consensus 440 ~Cg~v~~-r~el~~H~-~C~~Cgk~f~-~s~LekH~~~~H--kpv~C--p-Cg~~~-~R~~L~~H~~thCp~Kpi~C~f- 509 (567)
T PLN03086 440 GCGIVLR-VEEAKNHV-HCEKCGQAFQ-QGEMEKHMKVFH--EPLQC--P-CGVVL-EKEQMVQHQASTCPLRLITCRF- 509 (567)
T ss_pred cccceee-ccccccCc-cCCCCCCccc-hHHHHHHHHhcC--CCccC--C-CCCCc-chhHHHhhhhccCCCCceeCCC-
Confidence 3777773 44555554 3455999996 678999999985 88999 6 99755 6799999999999999999999
Q ss_pred CCCCCCCC----------cHHHHhhccCCCCCCCCCCCcccccccc
Q psy16849 305 LVNPSIKE----------GKDLAATAKCPSADTSQPFKTWATVVST 340 (371)
Q Consensus 305 ~C~ksF~~----------~~~L~~H~k~h~~~c~~~fk~~~~l~~h 340 (371)
|++.|.. ...|..|.... +.....|..|+..+.-
T Consensus 510 -C~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vrl 553 (567)
T PLN03086 510 -CGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDSCGRSVML 553 (567)
T ss_pred -CCCccccCccccchhhhhhhHHHHHHhc-CCcceEccccCCeeee
Confidence 9999953 45899998863 5555566666655443
No 14
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.32 E-value=2.1e-07 Score=58.27 Aligned_cols=26 Identities=38% Similarity=0.875 Sum_probs=18.8
Q ss_pred HHHHHhhhhcCCCCccCCCCCCCCCCCC
Q psy16849 285 ELTRHFRKHTGDRPFQCKPNLVNPSIKE 312 (371)
Q Consensus 285 ~L~~H~r~HtgeKPykC~~~~C~ksF~~ 312 (371)
+|.+|+++|+|+|||+|++ |+++|.+
T Consensus 1 ~l~~H~~~H~~~k~~~C~~--C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPY--CGKSFSN 26 (26)
T ss_dssp HHHHHHHHHSSSSSEEESS--SSEEESS
T ss_pred CHHHHhhhcCCCCCCCCCC--CcCeeCc
Confidence 4677777777777777777 7777753
No 15
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.19 E-value=1.8e-06 Score=90.63 Aligned_cols=96 Identities=15% Similarity=0.290 Sum_probs=77.8
Q ss_pred cCCCCCCCcCCCCCCCchhhcccccc------cCCCCCcccCchhHHHHHhhhcCCCccccccCCCCCcccC--------
Q psy16849 217 INTPSKTKTRERRSGSRKKLTSHACF------HPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFAR-------- 282 (371)
Q Consensus 217 ~~~p~~c~~c~~~~~~~~~l~~H~c~------h~~Cgk~F~~~s~L~~H~r~HtgeKpf~C~~~~CgK~F~~-------- 282 (371)
....+.|..|++.|. ...+..|+.. |+ ||+.+ .+..|..|+++|.+++++.|.+ |++.|..
T Consensus 450 l~~H~~C~~Cgk~f~-~s~LekH~~~~Hkpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~f--C~~~v~~g~~~~d~~ 524 (567)
T PLN03086 450 AKNHVHCEKCGQAFQ-QGEMEKHMKVFHEPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRF--CGDMVQAGGSAMDVR 524 (567)
T ss_pred cccCccCCCCCCccc-hHHHHHHHHhcCCCccCC-CCCCc-chhHHHhhhhccCCCCceeCCC--CCCccccCccccchh
Confidence 345678999999996 5678888653 45 99765 6689999999999999999988 9999852
Q ss_pred --hhHHHHHhhhhcCCCCccCCCCCCCCCCCCcHHHHhhcc
Q psy16849 283 --SDELTRHFRKHTGDRPFQCKPNLVNPSIKEGKDLAATAK 321 (371)
Q Consensus 283 --ks~L~~H~r~HtgeKPykC~~~~C~ksF~~~~~L~~H~k 321 (371)
...|..|...+ |.+++.|.. ||+.|.. .+|..|+.
T Consensus 525 d~~s~Lt~HE~~C-G~rt~~C~~--Cgk~Vrl-rdm~~H~~ 561 (567)
T PLN03086 525 DRLRGMSEHESIC-GSRTAPCDS--CGRSVML-KEMDIHQI 561 (567)
T ss_pred hhhhhHHHHHHhc-CCcceEccc--cCCeeee-hhHHHHHH
Confidence 45899999985 899999999 9987765 56777764
No 16
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.00 E-value=3.2e-06 Score=52.90 Aligned_cols=26 Identities=58% Similarity=1.283 Sum_probs=23.4
Q ss_pred hHHHHHhhhcCCCccccccCCCCCcccC
Q psy16849 255 HLKAHLRTHTGEKPYQCKWKGCGWKFAR 282 (371)
Q Consensus 255 ~L~~H~r~HtgeKpf~C~~~~CgK~F~~ 282 (371)
+|.+||++|+|++||.|.+ |++.|.+
T Consensus 1 ~l~~H~~~H~~~k~~~C~~--C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPY--CGKSFSN 26 (26)
T ss_dssp HHHHHHHHHSSSSSEEESS--SSEEESS
T ss_pred CHHHHhhhcCCCCCCCCCC--CcCeeCc
Confidence 5899999999999999966 9999963
No 17
>PHA02768 hypothetical protein; Provisional
Probab=97.87 E-value=7.1e-06 Score=60.41 Aligned_cols=41 Identities=29% Similarity=0.496 Sum_probs=36.1
Q ss_pred cCCCCCcccCchhHHHHHhhhcCCCccccccCCCCCcccChhHHH
Q psy16849 243 HPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELT 287 (371)
Q Consensus 243 h~~Cgk~F~~~s~L~~H~r~HtgeKpf~C~~~~CgK~F~~ks~L~ 287 (371)
|+.||+.|.+..+|..||++|+ ++|+|.. |++.|.+.+.|.
T Consensus 8 C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~--C~k~f~~~s~l~ 48 (55)
T PHA02768 8 CPICGEIYIKRKSMITHLRKHN--TNLKLSN--CKRISLRTGEYI 48 (55)
T ss_pred cchhCCeeccHHHHHHHHHhcC--CcccCCc--ccceecccceeE
Confidence 4559999999999999999999 7999954 999999887764
No 18
>PHA00733 hypothetical protein
Probab=97.82 E-value=9.1e-06 Score=70.19 Aligned_cols=74 Identities=8% Similarity=0.066 Sum_probs=55.0
Q ss_pred CCCccccccCCCCCcccChhHHHHH--hh---hhcCCCCccCCCCCCCCCCCCcHHHHhhccCCC-----CCCCCCCCcc
Q psy16849 265 GEKPYQCKWKGCGWKFARSDELTRH--FR---KHTGDRPFQCKPNLVNPSIKEGKDLAATAKCPS-----ADTSQPFKTW 334 (371)
Q Consensus 265 geKpf~C~~~~CgK~F~~ks~L~~H--~r---~HtgeKPykC~~~~C~ksF~~~~~L~~H~k~h~-----~~c~~~fk~~ 334 (371)
..+++.|.+ |.+.|.....|..| ++ .+.+++||.|.. |++.|.+...|..|++.|. ..|++.|...
T Consensus 37 ~~~~~~~~~--~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~--Cgk~Fss~s~L~~H~r~h~~~~~C~~CgK~F~~~ 112 (128)
T PHA00733 37 EQKRLIRAV--VKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPL--CLMPFSSSVSLKQHIRYTEHSKVCPVCGKEFRNT 112 (128)
T ss_pred hhhhHHHHH--HhhhccChhhhcchHHHHhhcccCCCCCccCCC--CCCcCCCHHHHHHHHhcCCcCccCCCCCCccCCH
Confidence 467899987 99888887777665 22 334589999999 9999999999999998642 3455666666
Q ss_pred cccccccc
Q psy16849 335 ATVVSTYN 342 (371)
Q Consensus 335 ~~l~~h~~ 342 (371)
..|..|..
T Consensus 113 ~sL~~H~~ 120 (128)
T PHA00733 113 DSTLDHVC 120 (128)
T ss_pred HHHHHHHH
Confidence 66655443
No 19
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.68 E-value=1.6e-05 Score=77.23 Aligned_cols=55 Identities=29% Similarity=0.637 Sum_probs=47.8
Q ss_pred CCCccccccCCCCCcccChhHHHHHhhh-h------------------cCCCCccCCCCCCCCCCCCcHHHHhhcc
Q psy16849 265 GEKPYQCKWKGCGWKFARSDELTRHFRK-H------------------TGDRPFQCKPNLVNPSIKEGKDLAATAK 321 (371)
Q Consensus 265 geKpf~C~~~~CgK~F~~ks~L~~H~r~-H------------------tgeKPykC~~~~C~ksF~~~~~L~~H~k 321 (371)
++|||+|.+++|.|.++...-|+-|+.. | ...|||+|++ |+|+|+....|+.|.+
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCev--C~KRYKNlNGLKYHr~ 419 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEV--CDKRYKNLNGLKYHRK 419 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccc--cchhhccCccceeccc
Confidence 4699999999999999999999999772 2 1359999999 9999999999999987
No 20
>PHA00616 hypothetical protein
Probab=97.67 E-value=1.5e-05 Score=55.99 Aligned_cols=34 Identities=24% Similarity=0.443 Sum_probs=28.1
Q ss_pred ccccccCCCCCcccChhHHHHHhhhhcCCCCccCCC
Q psy16849 268 PYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCKP 303 (371)
Q Consensus 268 pf~C~~~~CgK~F~~ks~L~~H~r~HtgeKPykC~~ 303 (371)
||+|. .||+.|..+..|.+|++.|+|++++.|++
T Consensus 1 pYqC~--~CG~~F~~~s~l~~H~r~~hg~~~~~~~~ 34 (44)
T PHA00616 1 MYQCL--RCGGIFRKKKEVIEHLLSVHKQNKLTLEY 34 (44)
T ss_pred CCccc--hhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence 57884 48888888888888888888888888875
No 21
>PHA00732 hypothetical protein
Probab=97.61 E-value=5e-05 Score=60.24 Aligned_cols=47 Identities=26% Similarity=0.423 Sum_probs=40.0
Q ss_pred ccccccCCCCCcccChhHHHHHhh-hhcCCCCccCCCCCCCCCCCCcHHHHhhccCCC
Q psy16849 268 PYQCKWKGCGWKFARSDELTRHFR-KHTGDRPFQCKPNLVNPSIKEGKDLAATAKCPS 324 (371)
Q Consensus 268 pf~C~~~~CgK~F~~ks~L~~H~r-~HtgeKPykC~~~~C~ksF~~~~~L~~H~k~h~ 324 (371)
||.|.. |++.|.+...|+.|++ .|. ++.|+. |+++|. .|..|++.+.
T Consensus 1 py~C~~--Cgk~F~s~s~Lk~H~r~~H~---~~~C~~--CgKsF~---~l~~H~~~~~ 48 (79)
T PHA00732 1 MFKCPI--CGFTTVTLFALKQHARRNHT---LTKCPV--CNKSYR---RLNQHFYSQY 48 (79)
T ss_pred CccCCC--CCCccCCHHHHHHHhhcccC---CCccCC--CCCEeC---ChhhhhcccC
Confidence 588965 9999999999999998 465 368999 999998 5999997655
No 22
>KOG3993|consensus
Probab=97.35 E-value=3.1e-05 Score=77.65 Aligned_cols=75 Identities=20% Similarity=0.357 Sum_probs=48.7
Q ss_pred CCCcccCchhHHHHHhhhcCCCccccccCCCCCcccChhHHHHHhhhhc-------------------------------
Q psy16849 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHT------------------------------- 294 (371)
Q Consensus 246 Cgk~F~~~s~L~~H~r~HtgeKpf~C~~~~CgK~F~~ks~L~~H~r~Ht------------------------------- 294 (371)
|...|.....|.+|.-.-.-..-|+| +.|+|.|.-..+|..|.|=|.
T Consensus 273 CK~kYeD~F~LAQHrC~RIV~vEYrC--PEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~ 350 (500)
T KOG3993|consen 273 CKEKYEDAFALAQHRCPRIVHVEYRC--PECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGD 350 (500)
T ss_pred HHHhhhhHHHHhhccCCeeEEeeecC--CcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCC
Confidence 55566666666666432211123666 446666666666666665431
Q ss_pred --CCCCccCCCCCCCCCCCCcHHHHhhccCCC
Q psy16849 295 --GDRPFQCKPNLVNPSIKEGKDLAATAKCPS 324 (371)
Q Consensus 295 --geKPykC~~~~C~ksF~~~~~L~~H~k~h~ 324 (371)
.+.-|.|.+ |+|.|+++..|++|+.+|+
T Consensus 351 dss~gi~~C~~--C~KkFrRqAYLrKHqlthq 380 (500)
T KOG3993|consen 351 DSSSGIFSCHT--CGKKFRRQAYLRKHQLTHQ 380 (500)
T ss_pred cccCceeecHH--hhhhhHHHHHHHHhHHhhh
Confidence 123499999 9999999999999988877
No 23
>KOG3993|consensus
Probab=97.08 E-value=0.00011 Score=73.74 Aligned_cols=73 Identities=26% Similarity=0.457 Sum_probs=63.1
Q ss_pred CCCCCcCCCCCCCchhhcccccc--------cCCCCCcccCchhHHHHHhhhcC--------C-----------------
Q psy16849 220 PSKTKTRERRSGSRKKLTSHACF--------HPGCGKTYTKSSHLKAHLRTHTG--------E----------------- 266 (371)
Q Consensus 220 p~~c~~c~~~~~~~~~l~~H~c~--------h~~Cgk~F~~~s~L~~H~r~Htg--------e----------------- 266 (371)
.|.|..|...+...-.|..|+|. |+.|+|+|....+|..|.|.|.. .
T Consensus 267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~ 346 (500)
T KOG3993|consen 267 DYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAE 346 (500)
T ss_pred HHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhcc
Confidence 37899999999999999999885 56799999999999999998852 1
Q ss_pred --------CccccccCCCCCcccChhHHHHHhhhhc
Q psy16849 267 --------KPYQCKWKGCGWKFARSDELTRHFRKHT 294 (371)
Q Consensus 267 --------Kpf~C~~~~CgK~F~~ks~L~~H~r~Ht 294 (371)
.-|.|.+ |+|.|.+...|+.|+.+|.
T Consensus 347 rsg~dss~gi~~C~~--C~KkFrRqAYLrKHqlthq 380 (500)
T KOG3993|consen 347 RSGDDSSSGIFSCHT--CGKKFRRQAYLRKHQLTHQ 380 (500)
T ss_pred ccCCcccCceeecHH--hhhhhHHHHHHHHhHHhhh
Confidence 1388977 9999999999999988775
No 24
>PHA00616 hypothetical protein
Probab=96.83 E-value=0.00031 Score=49.45 Aligned_cols=29 Identities=10% Similarity=0.200 Sum_probs=26.9
Q ss_pred CccCCCCCCCCCCCCcHHHHhhccCCCCCCC
Q psy16849 298 PFQCKPNLVNPSIKEGKDLAATAKCPSADTS 328 (371)
Q Consensus 298 PykC~~~~C~ksF~~~~~L~~H~k~h~~~c~ 328 (371)
||+|.. ||+.|..++.|.+|++.||++..
T Consensus 1 pYqC~~--CG~~F~~~s~l~~H~r~~hg~~~ 29 (44)
T PHA00616 1 MYQCLR--CGGIFRKKKEVIEHLLSVHKQNK 29 (44)
T ss_pred CCccch--hhHHHhhHHHHHHHHHHhcCCCc
Confidence 699999 99999999999999999998754
No 25
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=96.71 E-value=0.0003 Score=42.10 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=12.0
Q ss_pred ccCCCCCCCCCCCCcHHHHhhccC
Q psy16849 299 FQCKPNLVNPSIKEGKDLAATAKC 322 (371)
Q Consensus 299 ykC~~~~C~ksF~~~~~L~~H~k~ 322 (371)
|+|.. |++.|.++..|++|++.
T Consensus 1 y~C~~--C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPI--CGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETT--TTEEESSHHHHHHHHHH
T ss_pred CCCCC--CCCccCCHHHHHHHHhH
Confidence 44555 55555555555555543
No 26
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=96.49 E-value=0.0012 Score=41.11 Aligned_cols=25 Identities=16% Similarity=0.405 Sum_probs=20.6
Q ss_pred CccCCCCCCCCCCCCcHHHHhhccCCC
Q psy16849 298 PFQCKPNLVNPSIKEGKDLAATAKCPS 324 (371)
Q Consensus 298 PykC~~~~C~ksF~~~~~L~~H~k~h~ 324 (371)
||+|.. |++.|.+...|..|++.|.
T Consensus 1 ~~~C~~--C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDE--CGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETT--TTEEESSHHHHHHHHCTTT
T ss_pred CCCCCc--cCCccCChhHHHHHhHHhc
Confidence 578888 8888888888888888775
No 27
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=96.43 E-value=0.00073 Score=40.11 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=13.1
Q ss_pred ccCCCCCCCCCCCCcHHHHhhccCC
Q psy16849 299 FQCKPNLVNPSIKEGKDLAATAKCP 323 (371)
Q Consensus 299 ykC~~~~C~ksF~~~~~L~~H~k~h 323 (371)
|+|.+ |++.|.+...|++|++.|
T Consensus 1 ~~C~~--C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 1 FQCPI--CGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp EE-SS--TS-EESSHHHHHHHHHHH
T ss_pred CCCcC--CCCcCCcHHHHHHHHHhh
Confidence 45666 666666666666666544
No 28
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=96.39 E-value=0.0032 Score=46.01 Aligned_cols=50 Identities=16% Similarity=0.439 Sum_probs=36.5
Q ss_pred ccccccCCCCCcccChhHHHHHhh-hhcCC-CCccCCCCCCCCCCCCcHHHHhhccCCC
Q psy16849 268 PYQCKWKGCGWKFARSDELTRHFR-KHTGD-RPFQCKPNLVNPSIKEGKDLAATAKCPS 324 (371)
Q Consensus 268 pf~C~~~~CgK~F~~ks~L~~H~r-~Htge-KPykC~~~~C~ksF~~~~~L~~H~k~h~ 324 (371)
.|.|.+ |++ ......|..|.. .|..+ +.+.|++ |...+. .+|.+|++.+|
T Consensus 2 ~f~CP~--C~~-~~~~~~L~~H~~~~H~~~~~~v~CPi--C~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 2 SFTCPY--CGK-GFSESSLVEHCEDEHRSESKNVVCPI--CSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred CcCCCC--CCC-ccCHHHHHHHHHhHCcCCCCCccCCC--chhhhh--hHHHHHHHHhc
Confidence 378877 999 455678888866 45543 5688999 887655 48888887665
No 29
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=96.26 E-value=0.0023 Score=38.15 Aligned_cols=23 Identities=43% Similarity=1.047 Sum_probs=18.0
Q ss_pred cccccCCCCCcccChhHHHHHhhhh
Q psy16849 269 YQCKWKGCGWKFARSDELTRHFRKH 293 (371)
Q Consensus 269 f~C~~~~CgK~F~~ks~L~~H~r~H 293 (371)
|.|.. |++.|..+..|.+|++.|
T Consensus 1 y~C~~--C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPI--CGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETT--TTEEESSHHHHHHHHHHH
T ss_pred CCCCC--CCCccCCHHHHHHHHhHC
Confidence 57855 888888888888888765
No 30
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=96.03 E-value=0.0081 Score=58.80 Aligned_cols=53 Identities=30% Similarity=0.661 Sum_probs=42.9
Q ss_pred cccccccCCCCCcccCchhHHHHHh-hh------------------cCCCccccccCCCCCcccChhHHHHHhh
Q psy16849 237 TSHACFHPGCGKTYTKSSHLKAHLR-TH------------------TGEKPYQCKWKGCGWKFARSDELTRHFR 291 (371)
Q Consensus 237 ~~H~c~h~~Cgk~F~~~s~L~~H~r-~H------------------tgeKpf~C~~~~CgK~F~~ks~L~~H~r 291 (371)
+.++|.-++|.|.|+....|+-|+. -| ...|||+|.+ |+|+++...-|+-|+.
T Consensus 348 KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCev--C~KRYKNlNGLKYHr~ 419 (423)
T COG5189 348 KPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEV--CDKRYKNLNGLKYHRK 419 (423)
T ss_pred ceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccc--cchhhccCccceeccc
Confidence 4567777889999999999998875 23 1348999987 9999999999998865
No 31
>PHA00732 hypothetical protein
Probab=95.97 E-value=0.0062 Score=48.32 Aligned_cols=45 Identities=33% Similarity=0.519 Sum_probs=36.1
Q ss_pred cCCCCCcccCchhHHHHHhh-hcCCCccccccCCCCCcccChhHHHHHhhhhcC
Q psy16849 243 HPGCGKTYTKSSHLKAHLRT-HTGEKPYQCKWKGCGWKFARSDELTRHFRKHTG 295 (371)
Q Consensus 243 h~~Cgk~F~~~s~L~~H~r~-HtgeKpf~C~~~~CgK~F~~ks~L~~H~r~Htg 295 (371)
|..||+.|.....|..|++. |.+ +.|.. |++.|. .|..|++++.+
T Consensus 4 C~~Cgk~F~s~s~Lk~H~r~~H~~---~~C~~--CgKsF~---~l~~H~~~~~~ 49 (79)
T PHA00732 4 CPICGFTTVTLFALKQHARRNHTL---TKCPV--CNKSYR---RLNQHFYSQYD 49 (79)
T ss_pred CCCCCCccCCHHHHHHHhhcccCC---CccCC--CCCEeC---ChhhhhcccCC
Confidence 45699999999999999984 653 58965 999998 58888876553
No 32
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=95.34 E-value=0.0059 Score=48.73 Aligned_cols=71 Identities=15% Similarity=0.292 Sum_probs=21.9
Q ss_pred CCCCCcccCchhHHHHHhhhcCCCccccccCCCCCcccChhHHHHHhhhhcCCCCccCCCCCCCCCCCCcHHHHhhccCC
Q psy16849 244 PGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCKPNLVNPSIKEGKDLAATAKCP 323 (371)
Q Consensus 244 ~~Cgk~F~~~s~L~~H~r~HtgeKpf~C~~~~CgK~F~~ks~L~~H~r~HtgeKPykC~~~~C~ksF~~~~~L~~H~k~h 323 (371)
..|+..|.....|..||....+...- ....+.....+..+.+.-. ...+.|.+ |++.|.....|..||+.+
T Consensus 3 ~~C~~~f~~~~~l~~H~~~~H~~~~~------~~~~l~~~~~~~~~~~~~~-~~~~~C~~--C~~~f~s~~~l~~Hm~~~ 73 (100)
T PF12756_consen 3 LFCDESFSSVDDLLQHMKKKHGFDIP------DQKYLVDPNRLLNYLRKKV-KESFRCPY--CNKTFRSREALQEHMRSK 73 (100)
T ss_dssp -----------------------------------------------------SSEEBSS--SS-EESSHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccccc------ccccccccccccccccccc-CCCCCCCc--cCCCCcCHHHHHHHHcCc
Confidence 34999999999999999754432211 1112223344444443222 23799999 999999999999999864
No 33
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=95.11 E-value=0.015 Score=34.22 Aligned_cols=23 Identities=43% Similarity=0.952 Sum_probs=17.0
Q ss_pred cccccCCCCCcccChhHHHHHhhhh
Q psy16849 269 YQCKWKGCGWKFARSDELTRHFRKH 293 (371)
Q Consensus 269 f~C~~~~CgK~F~~ks~L~~H~r~H 293 (371)
|.|.+ |++.|.....|..|++.|
T Consensus 1 ~~C~~--C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 1 FQCPI--CGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp EE-SS--TS-EESSHHHHHHHHHHH
T ss_pred CCCcC--CCCcCCcHHHHHHHHHhh
Confidence 57866 888888888888888766
No 34
>smart00355 ZnF_C2H2 zinc finger.
Probab=94.78 E-value=0.013 Score=34.82 Aligned_cols=24 Identities=13% Similarity=0.324 Sum_probs=18.3
Q ss_pred ccCCCCCCCCCCCCcHHHHhhccCCC
Q psy16849 299 FQCKPNLVNPSIKEGKDLAATAKCPS 324 (371)
Q Consensus 299 ykC~~~~C~ksF~~~~~L~~H~k~h~ 324 (371)
|+|.. |+++|.....|..|++.|.
T Consensus 1 ~~C~~--C~~~f~~~~~l~~H~~~H~ 24 (26)
T smart00355 1 YRCPE--CGKVFKSKSALKEHMRTHX 24 (26)
T ss_pred CCCCC--CcchhCCHHHHHHHHHHhc
Confidence 56777 8888888888888877553
No 35
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=94.66 E-value=0.02 Score=35.42 Aligned_cols=25 Identities=36% Similarity=0.804 Sum_probs=21.2
Q ss_pred ccccccCCCCCcccChhHHHHHhhhhc
Q psy16849 268 PYQCKWKGCGWKFARSDELTRHFRKHT 294 (371)
Q Consensus 268 pf~C~~~~CgK~F~~ks~L~~H~r~Ht 294 (371)
+|.|.. |++.|.....|..|++.|.
T Consensus 1 ~~~C~~--C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDE--CGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETT--TTEEESSHHHHHHHHCTTT
T ss_pred CCCCCc--cCCccCChhHHHHHhHHhc
Confidence 578965 9999999999999998775
No 36
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=94.62 E-value=0.022 Score=45.32 Aligned_cols=69 Identities=20% Similarity=0.348 Sum_probs=21.4
Q ss_pred CCCcCCCCCCCchhhcccccccCC----CCCcccCchhHHHHHhhhcCCCccccccCCCCCcccChhHHHHHhhhh
Q psy16849 222 KTKTRERRSGSRKKLTSHACFHPG----CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKH 293 (371)
Q Consensus 222 ~c~~c~~~~~~~~~l~~H~c~h~~----Cgk~F~~~s~L~~H~r~HtgeKpf~C~~~~CgK~F~~ks~L~~H~r~H 293 (371)
.|..|+..|.....+..|+...++ ....+.....+..+++.-. ...+.|.+ |++.|.....|..|++.+
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~C~~--C~~~f~s~~~l~~Hm~~~ 73 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKV-KESFRCPY--CNKTFRSREALQEHMRSK 73 (100)
T ss_dssp -------------------------------------------------SSEEBSS--SS-EESSHHHHHHHHHHT
T ss_pred Ccccccccccccccccccccccccccccccccccccccccccccccc-CCCCCCCc--cCCCCcCHHHHHHHHcCc
Confidence 478899999999999999865433 1122223333444433222 23699977 999999999999999965
No 37
>PRK04860 hypothetical protein; Provisional
Probab=94.45 E-value=0.02 Score=51.43 Aligned_cols=40 Identities=25% Similarity=0.587 Sum_probs=32.6
Q ss_pred ccccccCCCCCcccChhHHHHHhhhhcCCCCccCCCCCCCCCCCCcHH
Q psy16849 268 PYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCKPNLVNPSIKEGKD 315 (371)
Q Consensus 268 pf~C~~~~CgK~F~~ks~L~~H~r~HtgeKPykC~~~~C~ksF~~~~~ 315 (371)
+|.| . |++ ....+++|.++|+|+++|.|.. |+..|.....
T Consensus 119 ~Y~C--~-C~~---~~~~~rrH~ri~~g~~~YrC~~--C~~~l~~~~~ 158 (160)
T PRK04860 119 PYRC--K-CQE---HQLTVRRHNRVVRGEAVYRCRR--CGETLVFKGE 158 (160)
T ss_pred EEEc--C-CCC---eeCHHHHHHHHhcCCccEECCC--CCceeEEecc
Confidence 5888 4 887 7778899999999999999999 8888876543
No 38
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=93.72 E-value=0.028 Score=55.28 Aligned_cols=74 Identities=34% Similarity=0.562 Sum_probs=61.8
Q ss_pred ccCCCCCcccCchhHHHHHh--hhcCC--CccccccCCCCCcccChhHHHHHhhhhcCCCCccCCCCCCCCCCCCcHH
Q psy16849 242 FHPGCGKTYTKSSHLKAHLR--THTGE--KPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCKPNLVNPSIKEGKD 315 (371)
Q Consensus 242 ~h~~Cgk~F~~~s~L~~H~r--~Htge--Kpf~C~~~~CgK~F~~ks~L~~H~r~HtgeKPykC~~~~C~ksF~~~~~ 315 (371)
.+..|...|.....|..|.+ .|+++ +++.|.+..|++.|.+...+.+|..+|++.+++.|....|.+.+.....
T Consensus 291 ~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (467)
T COG5048 291 KSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLN 368 (467)
T ss_pred CCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCccccccccC
Confidence 34559999999999999999 89999 9999972249999999999999999999988888888777776666555
No 39
>smart00355 ZnF_C2H2 zinc finger.
Probab=93.56 E-value=0.065 Score=31.72 Aligned_cols=24 Identities=38% Similarity=0.765 Sum_probs=18.6
Q ss_pred cccccCCCCCcccChhHHHHHhhhhc
Q psy16849 269 YQCKWKGCGWKFARSDELTRHFRKHT 294 (371)
Q Consensus 269 f~C~~~~CgK~F~~ks~L~~H~r~Ht 294 (371)
|.|.. |++.|.....|..|++.|.
T Consensus 1 ~~C~~--C~~~f~~~~~l~~H~~~H~ 24 (26)
T smart00355 1 YRCPE--CGKVFKSKSALKEHMRTHX 24 (26)
T ss_pred CCCCC--CcchhCCHHHHHHHHHHhc
Confidence 46755 8888888888888888664
No 40
>KOG2231|consensus
Probab=93.42 E-value=0.076 Score=57.17 Aligned_cols=52 Identities=27% Similarity=0.309 Sum_probs=31.5
Q ss_pred ccccCCCCCcccChhHHHHHhhhhcCCCCccCCCC----CCCCCCCCcHHHHhhccCCCCCC
Q psy16849 270 QCKWKGCGWKFARSDELTRHFRKHTGDRPFQCKPN----LVNPSIKEGKDLAATAKCPSADT 327 (371)
Q Consensus 270 ~C~~~~CgK~F~~ks~L~~H~r~HtgeKPykC~~~----~C~ksF~~~~~L~~H~k~h~~~c 327 (371)
.|.+ |...|.....|.+|++.+. |.|.+| |+..-|....+|+.|.+-+|--|
T Consensus 184 ~C~~--C~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~HflC 239 (669)
T KOG2231|consen 184 LCKF--CHERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGHFLC 239 (669)
T ss_pred cchh--hhhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcCccc
Confidence 4545 6666666677776666543 555553 24556666677777776666333
No 41
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=93.41 E-value=0.12 Score=37.56 Aligned_cols=47 Identities=34% Similarity=0.571 Sum_probs=35.2
Q ss_pred cCCCCCcccCchhHHHHHh-hhcCC-CccccccCCCCCcccChhHHHHHhhhhc
Q psy16849 243 HPGCGKTYTKSSHLKAHLR-THTGE-KPYQCKWKGCGWKFARSDELTRHFRKHT 294 (371)
Q Consensus 243 h~~Cgk~F~~~s~L~~H~r-~Htge-Kpf~C~~~~CgK~F~~ks~L~~H~r~Ht 294 (371)
|+.|++ ......|..|.. .|..+ +.+.|.+ |...+. .+|.+|+..+.
T Consensus 5 CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPi--C~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 5 CPYCGK-GFSESSLVEHCEDEHRSESKNVVCPI--CSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred CCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCC--chhhhh--hHHHHHHHHhc
Confidence 445999 566788999966 56554 5799976 998655 49999998764
No 42
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=93.32 E-value=0.053 Score=39.41 Aligned_cols=32 Identities=31% Similarity=0.607 Sum_probs=15.0
Q ss_pred CCCccccccCCCCCcccChhHHHHHhhhhcCCCC
Q psy16849 265 GEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298 (371)
Q Consensus 265 geKpf~C~~~~CgK~F~~ks~L~~H~r~HtgeKP 298 (371)
.+.|-.|.+ |+..+.+..+|++|+..+++.||
T Consensus 21 S~~PatCP~--C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 21 SEQPATCPI--CGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp TS--EE-TT--T--EESSHHHHHHHHHHHTTTS-
T ss_pred cCCCCCCCc--chhhccchhhHHHHHHHHhcccC
Confidence 355566643 66666666666666655555544
No 43
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=92.83 E-value=0.052 Score=53.29 Aligned_cols=64 Identities=30% Similarity=0.522 Sum_probs=55.2
Q ss_pred CccccccCCCCCcccChhHHHHHhh--hhcCC--CCccCCCCCCCCCCCCcHHHHhhccCCCCCCCCCCC
Q psy16849 267 KPYQCKWKGCGWKFARSDELTRHFR--KHTGD--RPFQCKPNLVNPSIKEGKDLAATAKCPSADTSQPFK 332 (371)
Q Consensus 267 Kpf~C~~~~CgK~F~~ks~L~~H~r--~Htge--KPykC~~~~C~ksF~~~~~L~~H~k~h~~~c~~~fk 332 (371)
.++.|.. |...|.+...|.+|.+ .|.++ +++.|.+..|++.|.+...|.+|...|.+.....+.
T Consensus 288 ~~~~~~~--~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (467)
T COG5048 288 LPIKSKQ--CNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEK 355 (467)
T ss_pred cCCCCcc--ccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccc
Confidence 5688854 9999999999999999 89999 999999444999999999999999999865544333
No 44
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=92.28 E-value=0.045 Score=33.16 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=15.9
Q ss_pred ccCCCCCCCCCCCCcHHHHhhccC
Q psy16849 299 FQCKPNLVNPSIKEGKDLAATAKC 322 (371)
Q Consensus 299 ykC~~~~C~ksF~~~~~L~~H~k~ 322 (371)
|.|.+ |++.|.....|+.|++.
T Consensus 1 ~~C~~--C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 1 FYCDI--CNKSFSSENSLRQHLRS 22 (25)
T ss_dssp EEETT--TTEEESSHHHHHHHHTT
T ss_pred CCCCC--CCCCcCCHHHHHHHHCc
Confidence 56777 77777777777777764
No 45
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=91.33 E-value=0.057 Score=39.23 Aligned_cols=32 Identities=13% Similarity=0.313 Sum_probs=23.1
Q ss_pred hcCCCCccCCCCCCCCCCCCcHHHHhhccCCCCC
Q psy16849 293 HTGDRPFQCKPNLVNPSIKEGKDLAATAKCPSAD 326 (371)
Q Consensus 293 HtgeKPykC~~~~C~ksF~~~~~L~~H~k~h~~~ 326 (371)
+..+.|-.|++ |+..+.+..+|+||+..+|+.
T Consensus 19 ~~S~~PatCP~--C~a~~~~srnLrRHle~~H~~ 50 (54)
T PF09237_consen 19 SQSEQPATCPI--CGAVIRQSRNLRRHLEIRHFK 50 (54)
T ss_dssp CTTS--EE-TT--T--EESSHHHHHHHHHHHTTT
T ss_pred hccCCCCCCCc--chhhccchhhHHHHHHHHhcc
Confidence 34578999999 999999999999999877743
No 46
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=91.25 E-value=0.04 Score=33.19 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=10.8
Q ss_pred ccCCCCCCCCCCCCcHHHHhhccCC
Q psy16849 299 FQCKPNLVNPSIKEGKDLAATAKCP 323 (371)
Q Consensus 299 ykC~~~~C~ksF~~~~~L~~H~k~h 323 (371)
|+|.. |+.... +..|.+|++.|
T Consensus 1 y~C~~--C~y~t~-~~~l~~H~~~~ 22 (24)
T PF13909_consen 1 YKCPH--CSYSTS-KSNLKRHLKRH 22 (24)
T ss_dssp EE-SS--SS-EES-HHHHHHHHHHH
T ss_pred CCCCC--CCCcCC-HHHHHHHHHhh
Confidence 45555 555555 55555555544
No 47
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=90.78 E-value=0.15 Score=31.73 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=19.1
Q ss_pred ccCCCCCCCCCCCCcHHHHhhccC
Q psy16849 299 FQCKPNLVNPSIKEGKDLAATAKC 322 (371)
Q Consensus 299 ykC~~~~C~ksF~~~~~L~~H~k~ 322 (371)
|-|.+ |++.|.....|..|++.
T Consensus 2 ~~C~~--C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDA--CDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTT--TTBBBSSHHHHHCCTTS
T ss_pred CCccc--CCCCcCCHHHHHHHHcc
Confidence 67888 99999999999999875
No 48
>KOG2231|consensus
Probab=90.61 E-value=0.21 Score=53.88 Aligned_cols=110 Identities=19% Similarity=0.393 Sum_probs=73.6
Q ss_pred CCCCcCCCCCCCchhhcccccccCCCCCcccCchhHHHHHh-hhcCCCccccccCCC---------CCcccChhHHHHHh
Q psy16849 221 SKTKTRERRSGSRKKLTSHACFHPGCGKTYTKSSHLKAHLR-THTGEKPYQCKWKGC---------GWKFARSDELTRHF 290 (371)
Q Consensus 221 ~~c~~c~~~~~~~~~l~~H~c~h~~Cgk~F~~~s~L~~H~r-~HtgeKpf~C~~~~C---------gK~F~~ks~L~~H~ 290 (371)
..|..|.+.+.. .+..+.|.+ | -.|.....|+.|++ .|. -+.|.+ | .....++..|..|+
T Consensus 100 ~~C~~C~~~~~~--~~~~~~~~~--c-~~~~s~~~Lk~H~~~~H~---~~~c~l--C~~~~kif~~e~k~Yt~~el~~h~ 169 (669)
T KOG2231|consen 100 HSCHICDRRFRA--LYNKKECLH--C-TEFKSVENLKNHMRDQHK---LHLCSL--CLQNLKIFINERKLYTRAELNLHL 169 (669)
T ss_pred hhcCccccchhh--hcccCCCcc--c-cchhHHHHHHHHHHHhhh---hhcccc--ccccceeeeeeeehehHHHHHHHH
Confidence 689999988753 455666766 8 88889999999996 442 245543 3 22344577888888
Q ss_pred hhhc-CCCC----ccCCCCCCCCCCCCcHHHHhhccCCC-----CC----CCCCCCcccccccccc
Q psy16849 291 RKHT-GDRP----FQCKPNLVNPSIKEGKDLAATAKCPS-----AD----TSQPFKTWATVVSTYN 342 (371)
Q Consensus 291 r~Ht-geKP----ykC~~~~C~ksF~~~~~L~~H~k~h~-----~~----c~~~fk~~~~l~~h~~ 342 (371)
..-. +++. -.|.+ |...|-....|.+|++.+| .+ +..-|.....|..|.+
T Consensus 170 ~~gd~d~~s~rGhp~C~~--C~~~fld~~el~rH~~~~h~~chfC~~~~~~neyy~~~~dLe~HfR 233 (669)
T KOG2231|consen 170 MFGDPDDESCRGHPLCKF--CHERFLDDDELYRHLRFDHEFCHFCDYKTGQNEYYNDYDDLEEHFR 233 (669)
T ss_pred hcCCCccccccCCccchh--hhhhhccHHHHHHhhccceeheeecCcccccchhcccchHHHHHhh
Confidence 7422 1222 36999 9999999999999998444 32 3334555555555533
No 49
>KOG4173|consensus
Probab=89.61 E-value=0.074 Score=49.29 Aligned_cols=80 Identities=23% Similarity=0.439 Sum_probs=62.8
Q ss_pred ccccCCCCCcccCchhHHHHHhhhcCCCccccccCCCCCcccChhHHHHHhhh-h---------cCCCCccCCCCCCCCC
Q psy16849 240 ACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRK-H---------TGDRPFQCKPNLVNPS 309 (371)
Q Consensus 240 ~c~h~~Cgk~F~~~s~L~~H~r~HtgeKpf~C~~~~CgK~F~~ks~L~~H~r~-H---------tgeKPykC~~~~C~ks 309 (371)
.|.-.+|-..|....+...|-.+-++ -.|.. |.+.|.+...|..|+.- | -|.--|+|-++||+..
T Consensus 81 ~cqvagc~~~~d~lD~~E~hY~~~h~---~sCs~--C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~K 155 (253)
T KOG4173|consen 81 ACQVAGCCQVFDALDDYEHHYHTLHG---NSCSF--CKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEK 155 (253)
T ss_pred cccccchHHHHhhhhhHHHhhhhccc---chhHH--HHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhh
Confidence 45556688999888888887653332 37977 99999999999999773 2 2444599999999999
Q ss_pred CCCcHHHHhhccCCC
Q psy16849 310 IKEGKDLAATAKCPS 324 (371)
Q Consensus 310 F~~~~~L~~H~k~h~ 324 (371)
|++..+.++|+-.-|
T Consensus 156 FkT~r~RkdH~I~~H 170 (253)
T KOG4173|consen 156 FKTSRDRKDHMIRMH 170 (253)
T ss_pred hhhhhhhhhHHHHhc
Confidence 999999999986555
No 50
>PRK04860 hypothetical protein; Provisional
Probab=87.84 E-value=0.3 Score=43.82 Aligned_cols=40 Identities=23% Similarity=0.476 Sum_probs=31.1
Q ss_pred cccccCCCCCcccCchhHHHHHhhhcCCCccccccCCCCCcccChh
Q psy16849 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSD 284 (371)
Q Consensus 239 H~c~h~~Cgk~F~~~s~L~~H~r~HtgeKpf~C~~~~CgK~F~~ks 284 (371)
|...|. |++ ....+.+|.++|+++++|.|.. |++.|....
T Consensus 118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~--C~~~l~~~~ 157 (160)
T PRK04860 118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRR--CGETLVFKG 157 (160)
T ss_pred EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCC--CCceeEEec
Confidence 333444 776 6668999999999999999955 999887654
No 51
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=87.57 E-value=0.34 Score=29.18 Aligned_cols=23 Identities=26% Similarity=0.744 Sum_probs=18.9
Q ss_pred cccccCCCCCcccChhHHHHHhhhh
Q psy16849 269 YQCKWKGCGWKFARSDELTRHFRKH 293 (371)
Q Consensus 269 f~C~~~~CgK~F~~ks~L~~H~r~H 293 (371)
|.|.+ |++.|.....|+.|++.+
T Consensus 1 ~~C~~--C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDI--CNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETT--TTEEESSHHHHHHHHTTH
T ss_pred CCCCC--CCCCcCCHHHHHHHHCcC
Confidence 56866 999999999999998754
No 52
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=85.48 E-value=0.56 Score=28.05 Aligned_cols=23 Identities=30% Similarity=0.924 Sum_probs=16.0
Q ss_pred cccccCCCCCcccChhHHHHHhhhhc
Q psy16849 269 YQCKWKGCGWKFARSDELTRHFRKHT 294 (371)
Q Consensus 269 f~C~~~~CgK~F~~ks~L~~H~r~Ht 294 (371)
|+|.+ |+.... +..|.+|++.|.
T Consensus 1 y~C~~--C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPH--CSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SS--SS-EES-HHHHHHHHHHHH
T ss_pred CCCCC--CCCcCC-HHHHHHHHHhhC
Confidence 57865 888877 888888888754
No 53
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=83.07 E-value=0.81 Score=29.67 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.1
Q ss_pred CccCCCCCCCCCCCCcHHHHhhccC
Q psy16849 298 PFQCKPNLVNPSIKEGKDLAATAKC 322 (371)
Q Consensus 298 PykC~~~~C~ksF~~~~~L~~H~k~ 322 (371)
+|.|.+ |++.|.....++.|++.
T Consensus 3 ~~~C~~--C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 3 GFYCKL--CNVTFTDEISVEAHLKG 25 (35)
T ss_pred CeEccc--cCCccCCHHHHHHHHCh
Confidence 588999 99999999999999874
No 54
>KOG1146|consensus
Probab=80.85 E-value=0.54 Score=53.94 Aligned_cols=72 Identities=21% Similarity=0.459 Sum_probs=56.2
Q ss_pred CCCcccCchhHHHHHh-hhcCCCccccccCCCCCcccChhHHHHHhhh-h------------------------cCCCCc
Q psy16849 246 CGKTYTKSSHLKAHLR-THTGEKPYQCKWKGCGWKFARSDELTRHFRK-H------------------------TGDRPF 299 (371)
Q Consensus 246 Cgk~F~~~s~L~~H~r-~HtgeKpf~C~~~~CgK~F~~ks~L~~H~r~-H------------------------tgeKPy 299 (371)
|+..+.+...+..|++ .|+-.|-++| +.|++.|.....|..|+|. | .+-+||
T Consensus 442 ~e~~~~s~r~~~~~t~~L~S~~kt~~c--pkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~ 519 (1406)
T KOG1146|consen 442 AEPLLESKRSLEGQTVVLHSFFKTLKC--PKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPY 519 (1406)
T ss_pred hhhhhhhhcccccceeeeecccccccC--CccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcc
Confidence 6666666666666655 5666677888 5588888888888888886 1 124789
Q ss_pred cCCCCCCCCCCCCcHHHHhhcc
Q psy16849 300 QCKPNLVNPSIKEGKDLAATAK 321 (371)
Q Consensus 300 kC~~~~C~ksF~~~~~L~~H~k 321 (371)
.|.. |..++..+.+|-+|++
T Consensus 520 ~C~~--C~~stttng~Lsihlq 539 (1406)
T KOG1146|consen 520 PCRA--CNYSTTTNGNLSIHLQ 539 (1406)
T ss_pred ccee--eeeeeecchHHHHHHH
Confidence 9999 9999999999999986
No 55
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=80.25 E-value=0.87 Score=28.16 Aligned_cols=22 Identities=23% Similarity=0.694 Sum_probs=18.0
Q ss_pred cccccCCCCCcccChhHHHHHhhh
Q psy16849 269 YQCKWKGCGWKFARSDELTRHFRK 292 (371)
Q Consensus 269 f~C~~~~CgK~F~~ks~L~~H~r~ 292 (371)
|-|.. |++.|.....+..|++.
T Consensus 2 ~~C~~--C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDA--CDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTT--TTBBBSSHHHHHCCTTS
T ss_pred CCccc--CCCCcCCHHHHHHHHcc
Confidence 67866 99999999998888874
No 56
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=79.01 E-value=0.56 Score=46.74 Aligned_cols=20 Identities=45% Similarity=0.826 Sum_probs=11.7
Q ss_pred ccccCCCCCcccChhHHHHHhh
Q psy16849 270 QCKWKGCGWKFARSDELTRHFR 291 (371)
Q Consensus 270 ~C~~~~CgK~F~~ks~L~~H~r 291 (371)
.|.+ |.+.|..-+.|.+|+|
T Consensus 222 ~C~F--C~~~FYdDDEL~~HcR 241 (493)
T COG5236 222 LCIF--CKIYFYDDDELRRHCR 241 (493)
T ss_pred hhhh--ccceecChHHHHHHHH
Confidence 4544 6666666666666655
No 57
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=76.86 E-value=1.4 Score=27.14 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=12.4
Q ss_pred cCCCCCCCCCCCCcHHHHhhcc
Q psy16849 300 QCKPNLVNPSIKEGKDLAATAK 321 (371)
Q Consensus 300 kC~~~~C~ksF~~~~~L~~H~k 321 (371)
.|.. ||+.| ..+.|.+|++
T Consensus 4 ~C~~--CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 4 PCPI--CGRKF-NPDRLEKHEK 22 (25)
T ss_pred cCCC--CCCEE-CHHHHHHHHH
Confidence 5666 77777 5666666654
No 58
>KOG4173|consensus
Probab=69.33 E-value=1.3 Score=41.32 Aligned_cols=69 Identities=20% Similarity=0.316 Sum_probs=53.2
Q ss_pred CccccccCCCCCcccChhHHHHHhhhhcCCCCccCCCCCCCCCCCCcHHHHhhccCC-------------------CCCC
Q psy16849 267 KPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCKPNLVNPSIKEGKDLAATAKCP-------------------SADT 327 (371)
Q Consensus 267 Kpf~C~~~~CgK~F~~ks~L~~H~r~HtgeKPykC~~~~C~ksF~~~~~L~~H~k~h-------------------~~~c 327 (371)
..|.|.+.+|...|...++...|..+-+| -.|.+ |.+.|-+...|..|+--- -.+|
T Consensus 78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~---~sCs~--C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgC 152 (253)
T KOG4173|consen 78 PAFACQVAGCCQVFDALDDYEHHYHTLHG---NSCSF--CKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGC 152 (253)
T ss_pred ccccccccchHHHHhhhhhHHHhhhhccc---chhHH--HHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhh
Confidence 45889999999999999999999865444 37999 999999999999998422 2467
Q ss_pred CCCCCcccccccc
Q psy16849 328 SQPFKTWATVVST 340 (371)
Q Consensus 328 ~~~fk~~~~l~~h 340 (371)
...|++...-+.|
T Consensus 153 t~KFkT~r~RkdH 165 (253)
T KOG4173|consen 153 TEKFKTSRDRKDH 165 (253)
T ss_pred hhhhhhhhhhhhH
Confidence 7777766554444
No 59
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=63.77 E-value=5.6 Score=25.59 Aligned_cols=23 Identities=22% Similarity=0.577 Sum_probs=19.7
Q ss_pred ccccccCCCCCcccChhHHHHHhhh
Q psy16849 268 PYQCKWKGCGWKFARSDELTRHFRK 292 (371)
Q Consensus 268 pf~C~~~~CgK~F~~ks~L~~H~r~ 292 (371)
+|.|.+ |++.|.....+..|++.
T Consensus 3 ~~~C~~--C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 3 GFYCKL--CNVTFTDEISVEAHLKG 25 (35)
T ss_pred CeEccc--cCCccCCHHHHHHHHCh
Confidence 588977 99999999999999763
No 60
>KOG4124|consensus
Probab=62.85 E-value=1.8 Score=43.28 Aligned_cols=57 Identities=23% Similarity=0.524 Sum_probs=39.5
Q ss_pred CCccccccCCCCCcccChhHHHHHhh---------------hhcC----CCCccCCCCCCCCCCCCcHHHHhhccCCC
Q psy16849 266 EKPYQCKWKGCGWKFARSDELTRHFR---------------KHTG----DRPFQCKPNLVNPSIKEGKDLAATAKCPS 324 (371)
Q Consensus 266 eKpf~C~~~~CgK~F~~ks~L~~H~r---------------~Htg----eKPykC~~~~C~ksF~~~~~L~~H~k~h~ 324 (371)
.++|+|.++.|.+.++....|+.|.. .|++ .|+|+|++ |.++++..-.|+-|+...+
T Consensus 347 ~~~~~~~vp~~~~~~~n~ng~~~~~~~~h~s~i~~~s~~~~ph~~~~~~nk~~r~~i--~~~~~k~~~~l~~~~~~~~ 422 (442)
T KOG4124|consen 347 DKPYKCPVPNCDKAYKNQNGLKYHKLHGHCSPITTPTPAPIPHQGFVVENKPYRCEV--CSKRYKNLNGLKYHRTHSH 422 (442)
T ss_pred cCCCCCCCCcchhhcccCcceeeccccCcCCCCCCCCCCCCCcceeeeccCcccChh--hhhhhccCCCCCceeehhh
Confidence 45666766667666666655555543 2333 68999999 9999999888887765433
No 61
>KOG2893|consensus
Probab=58.59 E-value=3 Score=39.82 Aligned_cols=42 Identities=21% Similarity=0.551 Sum_probs=26.7
Q ss_pred cccCCCCCcccChhHHHHHhhhhcCCCCccCCCCCCCCCCCCcHHHHhhc
Q psy16849 271 CKWKGCGWKFARSDELTRHFRKHTGDRPFQCKPNLVNPSIKEGKDLAATA 320 (371)
Q Consensus 271 C~~~~CgK~F~~ks~L~~H~r~HtgeKPykC~~~~C~ksF~~~~~L~~H~ 320 (371)
|-| |.+.|....-|.+|++ .|-|+|.+ |.|..-+.-.|..|-
T Consensus 13 cwy--cnrefddekiliqhqk----akhfkchi--chkkl~sgpglsihc 54 (341)
T KOG2893|consen 13 CWY--CNREFDDEKILIQHQK----AKHFKCHI--CHKKLFSGPGLSIHC 54 (341)
T ss_pred eee--cccccchhhhhhhhhh----hccceeee--ehhhhccCCCceeeh
Confidence 445 7777777666666655 24477777 776666666666554
No 62
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=56.50 E-value=3.4 Score=41.37 Aligned_cols=99 Identities=20% Similarity=0.314 Sum_probs=62.1
Q ss_pred hcccccccCCCCCcccCchhHHHHHhhhcCCCccccccCCCC---------CcccChhHHHHHhhhhcCCCCc----cCC
Q psy16849 236 LTSHACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCG---------WKFARSDELTRHFRKHTGDRPF----QCK 302 (371)
Q Consensus 236 l~~H~c~h~~Cgk~F~~~s~L~~H~r~HtgeKpf~C~~~~Cg---------K~F~~ks~L~~H~r~HtgeKPy----kC~ 302 (371)
|-.+.|.-..|.........|+.|....++. +.|.+ |- -...++..|+.|...-..+..| .|.
T Consensus 149 LL~F~CP~skc~~~C~~~k~lk~H~K~~H~~--~~C~~--C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~ 224 (493)
T COG5236 149 LLSFKCPKSKCHRRCGSLKELKKHYKAQHGF--VLCSE--CIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCI 224 (493)
T ss_pred HHHhcCCchhhhhhhhhHHHHHHHHHhhcCc--EEhHh--hhcCcccCccceeeeecccccccccCCccccCcCCCchhh
Confidence 3445555555666666667788887755433 56644 52 2344567788887654444333 599
Q ss_pred CCCCCCCCCCcHHHHhhccCCCCCC----------CCCCCcccccccc
Q psy16849 303 PNLVNPSIKEGKDLAATAKCPSADT----------SQPFKTWATVVST 340 (371)
Q Consensus 303 ~~~C~ksF~~~~~L~~H~k~h~~~c----------~~~fk~~~~l~~h 340 (371)
+ |.+.|-.-+.|.+|+|-.|..| .+=|+.+..|+.|
T Consensus 225 F--C~~~FYdDDEL~~HcR~~HE~ChICD~v~p~~~QYFK~Y~~Le~H 270 (493)
T COG5236 225 F--CKIYFYDDDELRRHCRLRHEACHICDMVGPIRYQYFKSYEDLEAH 270 (493)
T ss_pred h--ccceecChHHHHHHHHhhhhhhhhhhccCccchhhhhCHHHHHHH
Confidence 9 9999999999998887444222 3446666666665
No 63
>KOG2893|consensus
Probab=54.16 E-value=4.9 Score=38.35 Aligned_cols=42 Identities=24% Similarity=0.562 Sum_probs=31.3
Q ss_pred CCCcccCchhHHHHHhhhcCCCccccccCCCCCcccChhHHHHH-hhhh
Q psy16849 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRH-FRKH 293 (371)
Q Consensus 246 Cgk~F~~~s~L~~H~r~HtgeKpf~C~~~~CgK~F~~ks~L~~H-~r~H 293 (371)
|.+.|....-|..|++ .|.|+|.+ |-|...+---|..| |.+|
T Consensus 16 cnrefddekiliqhqk----akhfkchi--chkkl~sgpglsihcmqvh 58 (341)
T KOG2893|consen 16 CNREFDDEKILIQHQK----AKHFKCHI--CHKKLFSGPGLSIHCMQVH 58 (341)
T ss_pred cccccchhhhhhhhhh----hccceeee--ehhhhccCCCceeehhhhh
Confidence 9999999999998875 35599998 98876665555555 3344
No 64
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=45.69 E-value=11 Score=25.76 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=12.1
Q ss_pred CCCccCCCCCCCCCCCCc----HHHHhhcc
Q psy16849 296 DRPFQCKPNLVNPSIKEG----KDLAATAK 321 (371)
Q Consensus 296 eKPykC~~~~C~ksF~~~----~~L~~H~k 321 (371)
..-.+|.+ |++.++.. ..|.+|++
T Consensus 14 ~~~a~C~~--C~~~~~~~~~~ts~l~~HL~ 41 (45)
T PF02892_consen 14 KKKAKCKY--CGKVIKYSSGGTSNLKRHLK 41 (45)
T ss_dssp SS-EEETT--TTEE-----SSTHHHHHHHH
T ss_pred cCeEEeCC--CCeEEeeCCCcHHHHHHhhh
Confidence 34456777 66666654 66777763
No 65
>KOG2186|consensus
Probab=45.69 E-value=11 Score=36.39 Aligned_cols=50 Identities=16% Similarity=0.474 Sum_probs=37.3
Q ss_pred cccccCCCCCcccChhHHHHHhhhhcCCCCccCCCCCCCCCCCCcHHHHhhccCCCC
Q psy16849 269 YQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCKPNLVNPSIKEGKDLAATAKCPSA 325 (371)
Q Consensus 269 f~C~~~~CgK~F~~ks~L~~H~r~HtgeKPykC~~~~C~ksF~~~~~L~~H~k~h~~ 325 (371)
|.|.. ||.... +-.+.+|+-.-.+ ..|.|.. |++.|-+ .+.+.|.+|-+.
T Consensus 4 FtCnv--CgEsvK-Kp~vekH~srCrn-~~fSCID--C~k~F~~-~sYknH~kCITE 53 (276)
T KOG2186|consen 4 FTCNV--CGESVK-KPQVEKHMSRCRN-AYFSCID--CGKTFER-VSYKNHTKCITE 53 (276)
T ss_pred Eehhh--hhhhcc-ccchHHHHHhccC-CeeEEee--ccccccc-chhhhhhhhcch
Confidence 67865 887644 4466678776655 6788988 9999988 788888888763
No 66
>KOG2482|consensus
Probab=42.50 E-value=26 Score=35.28 Aligned_cols=16 Identities=38% Similarity=0.835 Sum_probs=12.7
Q ss_pred CCCcccCchhHHHHHh
Q psy16849 246 CGKTYTKSSHLKAHLR 261 (371)
Q Consensus 246 Cgk~F~~~s~L~~H~r 261 (371)
|.|.|..+..|+.|||
T Consensus 201 CekifrdkntLkeHMr 216 (423)
T KOG2482|consen 201 CEKIFRDKNTLKEHMR 216 (423)
T ss_pred eccccCCcHHHHHHHH
Confidence 7888888888888876
No 67
>KOG2071|consensus
Probab=42.08 E-value=64 Score=34.69 Aligned_cols=18 Identities=11% Similarity=0.207 Sum_probs=14.3
Q ss_pred cCCCCccCCCCCCCCCCCCc
Q psy16849 294 TGDRPFQCKPNLVNPSIKEG 313 (371)
Q Consensus 294 tgeKPykC~~~~C~ksF~~~ 313 (371)
++++...|.+ |+..|.-.
T Consensus 509 d~e~~~~C~I--C~EkFe~v 526 (579)
T KOG2071|consen 509 DSERQASCPI--CQEKFEVV 526 (579)
T ss_pred CcccccCCcc--ccccccee
Confidence 3488899999 99888654
No 68
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=41.11 E-value=14 Score=26.16 Aligned_cols=20 Identities=15% Similarity=0.385 Sum_probs=11.7
Q ss_pred cCCCCCCCCCCCCc-----HHHHhhcc
Q psy16849 300 QCKPNLVNPSIKEG-----KDLAATAK 321 (371)
Q Consensus 300 kC~~~~C~ksF~~~-----~~L~~H~k 321 (371)
.|.+ |++.+... ++|.+|++
T Consensus 20 ~C~~--C~~~l~~~~~~gTs~L~rHl~ 44 (50)
T smart00614 20 KCKY--CGKKLSRSSKGGTSNLRRHLR 44 (50)
T ss_pred EecC--CCCEeeeCCCCCcHHHHHHHH
Confidence 4666 66655554 46666665
No 69
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=37.69 E-value=7.5 Score=33.95 Aligned_cols=36 Identities=11% Similarity=0.069 Sum_probs=18.8
Q ss_pred cCCCCCCCCCCCCcHHHHhhccCCCCCCCCCCCcccccccc
Q psy16849 300 QCKPNLVNPSIKEGKDLAATAKCPSADTSQPFKTWATVVST 340 (371)
Q Consensus 300 kC~~~~C~ksF~~~~~L~~H~k~h~~~c~~~fk~~~~l~~h 340 (371)
.|-. |||.|+ .|+||+.+|++-....|..+..|-.-
T Consensus 78 icLE--DGkkfK---SLKRHL~t~~gmTPd~YR~KW~LP~d 113 (148)
T COG4957 78 ICLE--DGKKFK---SLKRHLTTHYGLTPDEYRAKWGLPPD 113 (148)
T ss_pred EEec--cCcchH---HHHHHHhcccCCCHHHHHHhcCCCCC
Confidence 4555 555553 45666666665554444444444433
No 70
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=34.04 E-value=18 Score=27.01 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=13.3
Q ss_pred cCCCCccCCCCCCCCCCCCcHHHHhhcc
Q psy16849 294 TGDRPFQCKPNLVNPSIKEGKDLAATAK 321 (371)
Q Consensus 294 tgeKPykC~~~~C~ksF~~~~~L~~H~k 321 (371)
.||.-++|+- ||.-|....+..+|+.
T Consensus 13 DGE~~lrCPR--C~~~FR~~K~Y~RHVN 38 (65)
T COG4049 13 DGEEFLRCPR--CGMVFRRRKDYIRHVN 38 (65)
T ss_pred CCceeeeCCc--hhHHHHHhHHHHHHhh
Confidence 3444455555 5555555555555553
No 71
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=33.27 E-value=20 Score=29.52 Aligned_cols=26 Identities=8% Similarity=0.160 Sum_probs=22.6
Q ss_pred CccC----CCCCCCCCCCCcHHHHhhccCCCC
Q psy16849 298 PFQC----KPNLVNPSIKEGKDLAATAKCPSA 325 (371)
Q Consensus 298 PykC----~~~~C~ksF~~~~~L~~H~k~h~~ 325 (371)
-|.| .. |+..+.+...+++|++.+|+
T Consensus 80 G~~C~~~~~~--C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 80 GYRCQCDPPH--CGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred CeeeecCCCC--CCcEeccHHHHHHHHHHhcC
Confidence 3899 66 99999999999999988774
No 72
>KOG1146|consensus
Probab=32.50 E-value=15 Score=42.75 Aligned_cols=92 Identities=10% Similarity=0.087 Sum_probs=61.8
Q ss_pred CCCCCCcCCCCCCCchhhc----ccccccCCCCCcccCchhHHHHHhhhcCCCccccccCCCCCcccChhHHHHHhhhhc
Q psy16849 219 TPSKTKTRERRSGSRKKLT----SHACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHT 294 (371)
Q Consensus 219 ~p~~c~~c~~~~~~~~~l~----~H~c~h~~Cgk~F~~~s~L~~H~r~HtgeKpf~C~~~~CgK~F~~ks~L~~H~r~Ht 294 (371)
....|..|...+...-.+. .|...+..|...|.....|..|.+ + |.+.|....-+.-|...|-
T Consensus 1259 Ge~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~--------k-----~~~~~~~~~~~~~~~l~~~ 1325 (1406)
T KOG1146|consen 1259 GEGECGAVDELLTPSFGISTLDVTHRYLCRQCKMAFDGEAPLTAHQR--------K-----FCFAGRGSGGSMPPPLRVP 1325 (1406)
T ss_pred CcchhhhccccccCccceeecccchhHHHHHHHhhhcchhHHHHHHH--------H-----HHhccCccccCCCCcccCc
Confidence 3567777777766554443 122233448889999999988871 1 3344555555566666666
Q ss_pred CCCCccCCCCCCCCCCCCcHHHHhhccCCCCC
Q psy16849 295 GDRPFQCKPNLVNPSIKEGKDLAATAKCPSAD 326 (371)
Q Consensus 295 geKPykC~~~~C~ksF~~~~~L~~H~k~h~~~ 326 (371)
..++| |.. |...|.....|..||+.-.+.
T Consensus 1326 d~~~~-c~~--c~~~~~~~~alqihm~~~~~~ 1354 (1406)
T KOG1146|consen 1326 DCTYH-CLA--CEVLLSGREALQIHMRSSAHR 1354 (1406)
T ss_pred ccccc-chH--HHhhcchhHHHHHHHHHhhhc
Confidence 66777 988 888899999999998854433
No 73
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=29.94 E-value=29 Score=30.22 Aligned_cols=24 Identities=50% Similarity=0.887 Sum_probs=14.6
Q ss_pred ccCCCCCcccCchhHHHHHhhhcCCCc
Q psy16849 242 FHPGCGKTYTKSSHLKAHLRTHTGEKP 268 (371)
Q Consensus 242 ~h~~Cgk~F~~~s~L~~H~r~HtgeKp 268 (371)
.|-.||+.|+ .|++|++.|.|-.|
T Consensus 74 ~clecGk~~k---~LkrHL~~~~gltp 97 (132)
T PF05443_consen 74 ICLECGKKFK---TLKRHLRTHHGLTP 97 (132)
T ss_dssp E-TBT--EES---BHHHHHHHTT-S-H
T ss_pred EEccCCcccc---hHHHHHHHccCCCH
Confidence 4555999888 67899999977544
No 74
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=29.28 E-value=46 Score=27.92 Aligned_cols=15 Identities=33% Similarity=0.793 Sum_probs=7.6
Q ss_pred CccccccCCCCCcccCh
Q psy16849 267 KPYQCKWKGCGWKFARS 283 (371)
Q Consensus 267 Kpf~C~~~~CgK~F~~k 283 (371)
.|..|.+ ||..|.-.
T Consensus 25 ~PivCP~--CG~~~~~~ 39 (108)
T PF09538_consen 25 DPIVCPK--CGTEFPPE 39 (108)
T ss_pred CCccCCC--CCCccCcc
Confidence 4555633 66555443
No 75
>KOG4377|consensus
Probab=28.42 E-value=53 Score=33.91 Aligned_cols=79 Identities=20% Similarity=0.354 Sum_probs=54.0
Q ss_pred ccccCCCCCcccCchhHHHHHhhhcCCC------------ccccccCCCCCcccChhHHHHHhhhhcCC-----C--Ccc
Q psy16849 240 ACFHPGCGKTYTKSSHLKAHLRTHTGEK------------PYQCKWKGCGWKFARSDELTRHFRKHTGD-----R--PFQ 300 (371)
Q Consensus 240 ~c~h~~Cgk~F~~~s~L~~H~r~HtgeK------------pf~C~~~~CgK~F~~ks~L~~H~r~Htge-----K--Pyk 300 (371)
.|.-+.|+..+..+.++.+|...|.... .|.|.+..|.| .-++...|-..|+.. + -|.
T Consensus 273 hcl~e~C~ykr~~k~DvirH~~~hkkrdnsL~dgf~rfs~syhC~~~~C~k---sTsdV~~h~nFht~~~n~Gfrrthfh 349 (480)
T KOG4377|consen 273 HCLNEYCFYKRGQKNDVIRHVEIHKKRDNSLIDGFHRFSNSYHCTGQICEK---STSDVLLHDNFHTDKRNNGFRRTHFH 349 (480)
T ss_pred cccCccccccccchhhhHHHHHHHhhcccccccchhhcCccchhhhcccCc---ccccccccCccccccccCceecceeE
Confidence 3455559888888999999998886432 36788888988 455666677766532 1 277
Q ss_pred CCCCCCCCCCCCcHHHHhhcc
Q psy16849 301 CKPNLVNPSIKEGKDLAATAK 321 (371)
Q Consensus 301 C~~~~C~ksF~~~~~L~~H~k 321 (371)
|--+||--.|+-...-..|++
T Consensus 350 C~r~gCTdtfK~~khk~yh~k 370 (480)
T KOG4377|consen 350 CQRIGCTDTFKDSKHKPYHYK 370 (480)
T ss_pred EeccCCccccccccccccccC
Confidence 999888888884444444444
No 76
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.98 E-value=1.4e+02 Score=25.30 Aligned_cols=76 Identities=18% Similarity=0.228 Sum_probs=46.3
Q ss_pred cCCCCCcccCchhHHHHHhhhcCCC------------ccccccCCCCCcccChhHHHHHhhhhcCCCCccCCCCCCCCCC
Q psy16849 243 HPGCGKTYTKSSHLKAHLRTHTGEK------------PYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCKPNLVNPSI 310 (371)
Q Consensus 243 h~~Cgk~F~~~s~L~~H~r~HtgeK------------pf~C~~~~CgK~F~~ks~L~~H~r~HtgeKPykC~~~~C~ksF 310 (371)
++.||-......+|.+...--..-+ ...| -+|.+.|........- .-.....|+|.. |.+.|
T Consensus 18 CpiCgLtLVss~HLARSyHHLfPl~~f~ev~~~~~~~~~~C--~~C~~~f~~~~~~~~~--~~~~~~~y~C~~--C~~~F 91 (112)
T TIGR00622 18 CPICGLTLILSTHLARSYHHLFPLKAFQEIPLEEYNGSRFC--FGCQGPFPKPPVSPFD--ELKDSHRYVCAV--CKNVF 91 (112)
T ss_pred CCcCCCEEeccchHHHhhhccCCCcccccccccccCCCCcc--cCcCCCCCCccccccc--ccccccceeCCC--CCCcc
Confidence 4447777666666664321000011 1248 5699998765321100 012234699999 99999
Q ss_pred CCcHHHHhhccCCC
Q psy16849 311 KEGKDLAATAKCPS 324 (371)
Q Consensus 311 ~~~~~L~~H~k~h~ 324 (371)
--.-+.-.|...|.
T Consensus 92 C~dCD~fiHe~Lh~ 105 (112)
T TIGR00622 92 CVDCDVFVHESLHC 105 (112)
T ss_pred ccccchhhhhhccC
Confidence 99999999988876
No 77
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=26.65 E-value=17 Score=31.63 Aligned_cols=35 Identities=9% Similarity=0.055 Sum_probs=16.4
Q ss_pred CccCCCCCCCCCCCCcHHHHhhccCCCCCCCCCCCccccc
Q psy16849 298 PFQCKPNLVNPSIKEGKDLAATAKCPSADTSQPFKTWATV 337 (371)
Q Consensus 298 PykC~~~~C~ksF~~~~~L~~H~k~h~~~c~~~fk~~~~l 337 (371)
.-.|-+ |||.|+.. ++|++.||+-....|..+.-|
T Consensus 72 ~i~cle--cGk~~k~L---krHL~~~~gltp~eYR~kwGl 106 (132)
T PF05443_consen 72 YIICLE--CGKKFKTL---KRHLRTHHGLTPEEYRAKWGL 106 (132)
T ss_dssp -EE-TB--T--EESBH---HHHHHHTT-S-HHHHHHHTT-
T ss_pred eeEEcc--CCcccchH---HHHHHHccCCCHHHHHHHhCc
Confidence 346777 77777653 777777776544444433333
No 78
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=23.19 E-value=64 Score=35.84 Aligned_cols=28 Identities=21% Similarity=0.688 Sum_probs=19.2
Q ss_pred hhcCCCccccccCCCCCcccChhHHHHHhhhhcCCCCccCCCCCCCC
Q psy16849 262 THTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCKPNLVNP 308 (371)
Q Consensus 262 ~HtgeKpf~C~~~~CgK~F~~ks~L~~H~r~HtgeKPykC~~~~C~k 308 (371)
.|...+...|.+ ||.. ...|..|.. ||-
T Consensus 456 ~H~~~~~L~CH~--Cg~~---------------~~~p~~Cp~--Cgs 483 (730)
T COG1198 456 LHKATGQLRCHY--CGYQ---------------EPIPQSCPE--CGS 483 (730)
T ss_pred EecCCCeeEeCC--CCCC---------------CCCCCCCCC--CCC
Confidence 344456688988 8843 357889999 774
No 79
>KOG2785|consensus
Probab=22.51 E-value=71 Score=32.60 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=37.9
Q ss_pred CCCcccCchhHHHHHhhhcCCCccccccCCCCCcccChhHHHHHhhhhcCCCCccCCCCCCC---CCCCCcHHHHhhcc
Q psy16849 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCKPNLVN---PSIKEGKDLAATAK 321 (371)
Q Consensus 246 Cgk~F~~~s~L~~H~r~HtgeKpf~C~~~~CgK~F~~ks~L~~H~r~HtgeKPykC~~~~C~---ksF~~~~~L~~H~k 321 (371)
|++.+.....-..||..++|- |.-+. . -......|..-+..-. ..-|.|-+ |. +.|.+....+.||.
T Consensus 172 C~~~~k~~e~~~~HM~~~Hgf--fIPdr---e-YL~D~~GLl~YLgeKV-~~~~~CL~--CN~~~~~f~sleavr~HM~ 241 (390)
T KOG2785|consen 172 CDKKSKSLEENLKHMFKEHGF--FIPDR---E-YLTDEKGLLKYLGEKV-GIGFICLF--CNELGRPFSSLEAVRAHMR 241 (390)
T ss_pred cCCCcccHHHHHHHHhhccCC--cCCch---H-hhhchhHHHHHHHHHh-ccCceEEE--eccccCcccccHHHHHHHh
Confidence 777777777777777766653 11110 0 0011111222222111 24478888 88 89999999999985
No 80
>PF15269 zf-C2H2_7: Zinc-finger
Probab=21.95 E-value=44 Score=23.86 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=19.3
Q ss_pred ccCCCCCCCCCCCCcHHHHhhccCCC
Q psy16849 299 FQCKPNLVNPSIKEGKDLAATAKCPS 324 (371)
Q Consensus 299 ykC~~~~C~ksF~~~~~L~~H~k~h~ 324 (371)
|+|-. |..+...++.|-.||+.-.
T Consensus 21 ykcfq--cpftc~~kshl~nhmky~l 44 (54)
T PF15269_consen 21 YKCFQ--CPFTCNEKSHLFNHMKYSL 44 (54)
T ss_pred ceeec--CCcccchHHHHHHHHHHHh
Confidence 67888 8888888899999988543
No 81
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=21.46 E-value=62 Score=20.97 Aligned_cols=24 Identities=25% Similarity=0.837 Sum_probs=14.2
Q ss_pred cccccCCCCCcccChhHHHHHhhhhcCCCCccCCCCCCCC
Q psy16849 269 YQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCKPNLVNP 308 (371)
Q Consensus 269 f~C~~~~CgK~F~~ks~L~~H~r~HtgeKPykC~~~~C~k 308 (371)
|+|.. ||..+.... .++.|++ |+.
T Consensus 2 ~~C~~--CGy~y~~~~------------~~~~CP~--Cg~ 25 (33)
T cd00350 2 YVCPV--CGYIYDGEE------------APWVCPV--CGA 25 (33)
T ss_pred EECCC--CCCEECCCc------------CCCcCcC--CCC
Confidence 56755 776544321 6677888 653
No 82
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=21.39 E-value=34 Score=31.99 Aligned_cols=43 Identities=23% Similarity=0.408 Sum_probs=25.9
Q ss_pred CccccccCCCCCcccChhHHHHHhhh----------hcCCCC-----ccCCCCCCCCCCCCc
Q psy16849 267 KPYQCKWKGCGWKFARSDELTRHFRK----------HTGDRP-----FQCKPNLVNPSIKEG 313 (371)
Q Consensus 267 Kpf~C~~~~CgK~F~~ks~L~~H~r~----------HtgeKP-----ykC~~~~C~ksF~~~ 313 (371)
|.+.|++ |++.|..+.-+....++ ..+..| ..|+. ||.+|...
T Consensus 4 k~~~CPv--C~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~--CgyA~~~~ 61 (214)
T PF09986_consen 4 KKITCPV--CGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPH--CGYAAFEE 61 (214)
T ss_pred CceECCC--CCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCC--CCCccccc
Confidence 4567755 77777766555544442 233444 36888 88877654
No 83
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=20.84 E-value=36 Score=24.49 Aligned_cols=44 Identities=23% Similarity=0.473 Sum_probs=19.3
Q ss_pred CccccccCCCCCcccChhHHHHHhhhhcCCCCccCCC--CCCCCCCC
Q psy16849 267 KPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCKP--NLVNPSIK 311 (371)
Q Consensus 267 Kpf~C~~~~CgK~F~~ks~L~~H~r~HtgeKPykC~~--~~C~ksF~ 311 (371)
.+..|.. +|+..-..+..|..|+..--..++-.|.+ .||+..+.
T Consensus 8 ~~v~C~~-~cc~~~i~r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~ 53 (60)
T PF02176_consen 8 RPVPCPN-GCCNEMIPRKELDDHLENECPKRPVPCPYSPYGCKERVP 53 (60)
T ss_dssp SEEE-TT---S-BEEECCCHHHHHHTTSTTSEEE-SS----S--EEE
T ss_pred CEeeCCC-CCcccceeHHHHHHHHHccCCCCcEECCCCCCCCCCccc
Confidence 4455643 23333333556777776555556666766 46665544
Done!