RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16849
(371 letters)
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 152 bits (385), Expect = 4e-46
Identities = 51/75 (68%), Positives = 58/75 (77%)
Query: 228 RRSGSRKKLTSHACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELT 287
+K H C +PGC K YTKSSHLKAHLRTHTGEKPY+C W+GC W+FARSDELT
Sbjct: 5 SSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELT 64
Query: 288 RHFRKHTGDRPFQCK 302
RH+RKHTG +PFQC
Sbjct: 65 RHYRKHTGAKPFQCG 79
Score = 87.3 bits (217), Expect = 1e-21
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHT 294
+ C GC + +S L H R HTG KP+QC C F+RSD L H ++H
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCG--VCNRSFSRSDHLALHMKRHQ 99
Score = 62.3 bits (152), Expect = 1e-12
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 249 TYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ S R H + P GC + +S L H R HTG++P++C
Sbjct: 2 SSGSSGPDLEKRRIHYCDYP------GCTKVYTKSSHLKAHLRTHTGEKPYKC 48
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 149 bits (379), Expect = 2e-45
Identities = 55/69 (79%), Positives = 60/69 (86%)
Query: 234 KKLTSHACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKH 293
K+ +H C + GCGKTYTKSSHLKAHLRTHTGEKPY C W GCGWKFARSDELTRH+RKH
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 294 TGDRPFQCK 302
TG RPFQC+
Sbjct: 61 TGHRPFQCQ 69
Score = 85.3 bits (212), Expect = 6e-21
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKH 293
+ C GCG + +S L H R HTG +P+QC+ C F+RSD L H ++H
Sbjct: 36 YHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQ--KCDRAFSRSDHLALHMKRH 88
Score = 36.4 bits (85), Expect = 0.002
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 8/36 (22%)
Query: 236 LTSHACFHPG--------CGKTYTKSSHLKAHLRTH 263
LT H H G C + +++S HL H++ H
Sbjct: 53 LTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 135 bits (342), Expect = 5e-40
Identities = 46/73 (63%), Positives = 52/73 (71%), Gaps = 2/73 (2%)
Query: 221 SKTKTRERRSGSRKKLTSHACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKF 280
S + + SR + SH C HPGCGKTY KSSHLKAH RTHTGEKP+ C WKGC +F
Sbjct: 2 SSGSSGPQIDSSRIR--SHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRF 59
Query: 281 ARSDELTRHFRKH 293
ARSDEL+RH R H
Sbjct: 60 ARSDELSRHRRTH 72
Score = 76.3 bits (188), Expect = 7e-18
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 253 SSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
SS + + + C GCG + +S L H R HTG++PF C
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSC 50
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 135 bits (341), Expect = 8e-40
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
+ C CGK + K + LK H +HT + PY+C +GC +F+ L RH + H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 299 FQC 301
+
Sbjct: 62 KKD 64
Score = 71.5 bits (176), Expect = 5e-16
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRK 292
+ C H GC K ++ S LK H + H G + C + +H +
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDD--SCSFVGKTWTLYLKHVAE 83
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 107 bits (269), Expect = 1e-29
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TGEKP+ C W GCGW+F+RSDEL+RH R H+G +P
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 60.4 bits (147), Expect = 2e-12
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQC 271
AC PGCG +++S L H R+H+G KP
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 109 bits (275), Expect = 1e-29
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
C +PGC K Y K SHL+ H R HTGEKPYQC +K C +F+RSD+L RH R+HTG +P
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 299 FQCK 302
FQCK
Sbjct: 67 FQCK 70
Score = 95.7 bits (239), Expect = 2e-24
Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 241 CFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQ 300
C C + +++S LK H R HTG KP+QCK C KF+RSD L H R HTG++PF
Sbjct: 39 CDFKDCERRFSRSDQLKRHQRRHTGVKPFQCK--TCQRKFSRSDHLKTHTRTHTGEKPFS 96
Query: 301 CKP 303
C+
Sbjct: 97 CRW 99
Score = 84.1 bits (209), Expect = 4e-20
Identities = 28/48 (58%), Positives = 34/48 (70%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKH 293
C + +++S HLK H RTHTGEKP+ C+W C KFARSDEL RH H
Sbjct: 72 CQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 64.1 bits (157), Expect = 6e-13
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 264 TGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ ++P+ C + GC ++ + L H RKHTG++P+QC
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQC 39
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 101 bits (253), Expect = 4e-27
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 252 KSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
++L ++ +PY C + C +F+RSDELTRH R HTG +PFQC+
Sbjct: 5 PMNNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCR 53
Score = 84.3 bits (209), Expect = 1e-20
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 220 PSKTKTRERRSGSRKKLTSHACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWK 279
P + + +AC C + +++S L H+R HTG+KP+QC + C
Sbjct: 3 PHPMNNLLNYVVPKMR--PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRN 58
Query: 280 FARSDELTRHFRKHT 294
F+RSD LT H R HT
Sbjct: 59 FSRSDHLTTHIRTHT 73
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 101 bits (253), Expect = 6e-27
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 241 CFHPGCGKTYTKSSHLKAHLR-THTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPF 299
C PGCG+ ++ +L H + H +K + C CG F L H + H+ R +
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDY 69
Query: 300 QCK 302
C+
Sbjct: 70 ICE 72
Score = 69.1 bits (170), Expect = 3e-15
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 263 HTGEKPYQCKWKGCGWKFARSDELTRHFR-KHTGDRPFQCK 302
+G C + GCG F+ L H + +H + F C
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCP 42
Score = 68.0 bits (167), Expect = 7e-15
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGC 276
+C P CGK++ HLK H++ H+ + Y C++ G
Sbjct: 39 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGP 76
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 103 bits (259), Expect = 7e-27
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
C PGCGK + +S +LK H RTHTGEKP++C+++GC +FA S + +H HT D+
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS 150
Query: 299 FQC 301
Sbjct: 151 GPS 153
Score = 94.3 bits (235), Expect = 2e-23
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 231 GSRKKLTSHACFHPGC---GKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELT 287
+ +H C+ C GK++ L H+R HTGEKP+ C + GCG FARS+ L
Sbjct: 50 VGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLK 109
Query: 288 RHFRKHTGDRPFQCKPN 304
H R HTG++PF+C+
Sbjct: 110 IHKRTHTGEKPFKCEFE 126
Score = 81.9 bits (203), Expect = 6e-19
Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 15/88 (17%)
Query: 230 SGSRKKLTSHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKPYQ----CKWKGC- 276
K+ S C +T++ L H+ P Q C W+ C
Sbjct: 7 GQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECP 66
Query: 277 --GWKFARSDELTRHFRKHTGDRPFQCK 302
G F +L H R HTG++PF C
Sbjct: 67 REGKSFKAKYKLVNHIRVHTGEKPFPCP 94
Score = 70.8 bits (174), Expect = 6e-15
Identities = 9/57 (15%), Positives = 13/57 (22%), Gaps = 2/57 (3%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
G + + + K C F+ EL H P Q
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNN 57
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 100 bits (251), Expect = 2e-25
Identities = 29/62 (46%), Positives = 35/62 (56%)
Query: 241 CFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQ 300
C CG Y K+ L+AHL HTGEKP+ CK +GC F LTRH HTG++ F
Sbjct: 15 CSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFT 74
Query: 301 CK 302
C
Sbjct: 75 CD 76
Score = 93.0 bits (232), Expect = 1e-22
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 241 CFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTG--DRP 298
C GC K +T HL H THTGEK + C GC +F + +HF +
Sbjct: 45 CKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICV 104
Query: 299 FQC 301
+ C
Sbjct: 105 YVC 107
Score = 91.9 bits (229), Expect = 3e-22
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 241 CFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQ 300
C CGK + K + LK H +HT + PY+C +GC +F+ L RH + H G +
Sbjct: 107 CHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKK 166
Query: 301 C 301
Sbjct: 167 D 167
Score = 89.2 bits (222), Expect = 3e-21
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 241 CFHPGCGKTYTKSSHLKAHLRTHTGEK--PYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
C GC +T +++K H K Y C ++ CG F + ++L H HT P
Sbjct: 75 CDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLP 134
Query: 299 FQCK 302
++C
Sbjct: 135 YECP 138
Score = 76.5 bits (189), Expect = 1e-16
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
K Y C + CG + ++ +L H KHTG++PF CK
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCK 46
Score = 61.8 bits (151), Expect = 1e-11
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 241 CFHPGCGKTYTKSSHLKAHLRTHTG---EKPYQCKWKGCGWKFARSDELTRHFRKHT 294
C H GC K ++ S LK H + H G +K C + G + + L H
Sbjct: 137 CPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSF--VGKTW--TLYLKHVAECHQ 189
Score = 27.6 bits (62), Expect = 4.9
Identities = 1/15 (6%), Positives = 3/15 (20%)
Query: 289 HFRKHTGDRPFQCKP 303
+ + C
Sbjct: 3 EKALPVVYKRYICSF 17
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 99.2 bits (248), Expect = 3e-25
Identities = 28/65 (43%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRH-FRKHTGDR 297
H C GC K+Y++ +LK HLR+HTGEKPY C+ +GC F+ + + +H R H+ ++
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK 127
Query: 298 PFQCK 302
P+ CK
Sbjct: 128 PYVCK 132
Score = 93.0 bits (232), Expect = 5e-23
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 241 CFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQ 300
+ + L H+R HTGEKP++C ++GC ++R + L H R HTG++P+
Sbjct: 40 GGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYM 99
Query: 301 CK 302
C+
Sbjct: 100 CE 101
Score = 85.0 bits (211), Expect = 4e-20
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 241 CFHPGCGKTYTKSSHLKAH-LRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTG 295
C H GC K ++ +S H RTH+ EKPY CK GC ++ L +H + G
Sbjct: 100 CEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 83.0 bits (206), Expect = 2e-19
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 241 CFHPGCGKTYTKSSHLKAHL---RTHTGEKPYQCKWKGCGWK---FARSDELTRHFRKHT 294
C GC + + L H+ H K + C W GC + F L H R+HT
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 295 GDRPFQCK 302
G++P +C
Sbjct: 64 GEKPHKCT 71
Score = 49.1 bits (118), Expect = 2e-07
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTG 265
+ C PGC K YT S L+ H++T G
Sbjct: 129 YVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 48.0 bits (115), Expect = 5e-07
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRK---HTGDRPFQCK 302
E +W GC +F ++L H H + F C
Sbjct: 1 ETDC--RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCH 38
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 97.6 bits (244), Expect = 5e-25
Identities = 30/59 (50%), Positives = 39/59 (66%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCKPN 304
CGK + +SS LK H HTGEKP+QC ++GCG +F+ L H R HTGDRP+ C +
Sbjct: 40 CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFD 98
Score = 95.3 bits (238), Expect = 3e-24
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 241 CFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQ 300
C GCGK ++ +L+ H+R HTG++PY C + GC KFA+S L H H + Q
Sbjct: 65 CTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 87.6 bits (218), Expect = 2e-21
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
AC H GC K + +S ++ HL TH G + + C CG F S +L RH HTG++P
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVC--AECGKAFVESSKLKRHQLVHTGEKP 62
Query: 299 FQC 301
FQC
Sbjct: 63 FQC 65
Score = 49.4 bits (119), Expect = 8e-08
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
+ C KGC F + + +H H G R C
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCA 38
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 92.1 bits (230), Expect = 1e-23
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
+AC C + +++S L H+R HTG+KP+QC + C F+RSD LT H R HTG++P
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 299 FQCK 302
F C
Sbjct: 63 FACD 66
Score = 82.9 bits (206), Expect = 5e-20
Identities = 31/68 (45%), Positives = 38/68 (55%), Gaps = 10/68 (14%)
Query: 236 LTSHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELT 287
LT H H G C + +++S HL H+RTHTGEKP+ C CG KFARSDE
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD--ICGRKFARSDERK 79
Query: 288 RHFRKHTG 295
RH + H
Sbjct: 80 RHTKIHLR 87
Score = 59.4 bits (145), Expect = 1e-11
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
E+PY C + C +F++S LTRH R HTG +PFQC+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCR 38
Score = 46.7 bits (112), Expect = 4e-07
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 8/40 (20%)
Query: 236 LTSHACFHPG--------CGKTYTKSSHLKAHLRTHTGEK 267
LT+H H G CG+ + +S K H + H +K
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 89.4 bits (223), Expect = 2e-22
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
CGK +++ LK H+R HTG KPY+C K C + A S L +H R H+ +RPF+C+
Sbjct: 14 CGKCFSRKDKLKTHMRCHTGVKPYKC--KTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Score = 87.9 bits (219), Expect = 7e-22
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 235 KLTSHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDEL 286
KL +H H G C SS L HLR H+ E+P++C+ C + S +L
Sbjct: 23 KLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI--CPYASRNSSQL 80
Query: 287 TRHFRKHTGDRPFQC 301
T H R HTGD
Sbjct: 81 TVHLRSHTGDSGPSS 95
Score = 62.8 bits (154), Expect = 1e-12
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 262 THTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
+ P++C + CG F+R D+L H R HTG +P++CK
Sbjct: 2 SSGSSGPHKC--EVCGKCFSRKDKLKTHMRCHTGVKPYKCK 40
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 88.6 bits (221), Expect = 6e-22
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 236 LTSHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELT 287
+ CG+ +TKS +L H RTHT E+PY C C F R D L
Sbjct: 5 SSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDI--CHKAFRRQDHLR 62
Query: 288 RHFRKHTGDRPFQCK 302
H H+ ++PF+C+
Sbjct: 63 DHRYIHSKEKPFKCQ 77
Score = 84.4 bits (210), Expect = 2e-20
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
C K + + HL+ H H+ EKP++C+ CG F +S L H H
Sbjct: 51 CHKAFRRQDHLRDHRYIHSKEKPFKCQ--ECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 74.8 bits (185), Expect = 6e-17
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 253 SSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
SS +K + C K CG F +S L H R HT +RP+ C
Sbjct: 2 SSGSSGGRLPSKTKKEFIC--KFCGRHFTKSYNLLIHERTHTDERPYTCD 49
Score = 55.5 bits (135), Expect = 4e-10
Identities = 10/44 (22%), Positives = 12/44 (27%), Gaps = 8/44 (18%)
Query: 236 LTSHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKPYQC 271
L H H CGK + +S L H H
Sbjct: 61 LRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 86.7 bits (216), Expect = 2e-21
Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
CGK++ +SS L HL H+ +PY C++ CG +F + ++ +H HTG++P +C+
Sbjct: 7 CGKSFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Score = 77.8 bits (193), Expect = 2e-18
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTG 295
CGK + + S +K H HTGEKP++C+ CG F++S L H RKHTG
Sbjct: 35 CGKRFHQKSDMKKHTFIHTGEKPHKCQV--CGKAFSQSSNLITHSRKHTG 82
Score = 38.9 bits (92), Expect = 2e-04
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 8/38 (21%)
Query: 236 LTSHACFHPG--------CGKTYTKSSHLKAHLRTHTG 265
+ H H G CGK +++SS+L H R HTG
Sbjct: 45 MKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 89.0 bits (222), Expect = 3e-21
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 13/83 (15%)
Query: 228 RRSGSRKKLTSHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWK 279
S S + A PG CGK++++S HL H RTHTGEKPY+C CG
Sbjct: 4 FGSSS---SVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPE--CGKS 58
Query: 280 FARSDELTRHFRKHTGDRPFQCK 302
F+ +LTRH R HTG++P++C
Sbjct: 59 FSDKKDLTRHQRTHTGEKPYKCP 81
Score = 87.1 bits (217), Expect = 1e-20
Identities = 30/57 (52%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
CGK++++ +HL+AH RTHTGEKPY+C CG F+R D L H R HTG++P++C
Sbjct: 111 CGKSFSQLAHLRAHQRTHTGEKPYKCP--ECGKSFSREDNLHTHQRTHTGEKPYKCP 165
Score = 86.7 bits (216), Expect = 3e-20
Identities = 27/57 (47%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
CGK++++ ++L+AH RTHTGEKPY C CG F++ L H R HTG++P++C
Sbjct: 83 CGKSFSQRANLRAHQRTHTGEKPYAC--PECGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Score = 81.0 bits (201), Expect = 3e-18
Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
CGK++++ +L H RTHTGEKPY+C CG F+R D L H R HTG +
Sbjct: 139 CGKSFSREDNLHTHQRTHTGEKPYKC--PECGKSFSRRDALNVHQRTHTGKKT 189
Score = 78.3 bits (194), Expect = 3e-17
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 249 TYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
+ SS A GEKPY C CG F+RSD L H R HTG++P++C
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYAC--PECGKSFSRSDHLAEHQRTHTGEKPYKCP 53
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 85.6 bits (213), Expect = 4e-21
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
C + +++S HL H+RTHTGEKP+ C CG KFARSDE RH P
Sbjct: 9 CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHRDIQHI-LPILED 62
Score = 65.2 bits (160), Expect = 1e-13
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 6/55 (10%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRH---FRKHTGDR 297
CG+ + +S K H P +++ L +K G+R
Sbjct: 37 CGRKFARSDERKRHRDIQH-ILPILED--KVEELLSKNYHLENEVARLKKLVGER 88
Score = 48.6 bits (117), Expect = 6e-08
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
KP+QC + C F+RSD LT H R HTG++PF C
Sbjct: 2 KPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFACD 35
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 86.0 bits (214), Expect = 6e-21
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
CGK++T S H+ H G +PY C CG KF L H + HTG +P++C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIHTGIKPYECN 69
Score = 80.2 bits (199), Expect = 8e-19
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 12/75 (16%)
Query: 236 LTSHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELT 287
H H G CGK + HL H++ HTG KPY+C C +F D
Sbjct: 25 RDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNI--CAKRFMWRDSF- 81
Query: 288 RHFRKHTGDRPFQCK 302
H + + ++
Sbjct: 82 -HRHVTSCTKSYEAA 95
Score = 65.2 bits (160), Expect = 2e-13
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 261 RTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
+G+K Y C+ CG F + RH H G RP+ C
Sbjct: 3 SGSSGDKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCG 41
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 84.8 bits (211), Expect = 8e-21
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTG--DRPFQCK 302
CGK + HL H +H+GEKPY C CG +F R D ++ H R H G +P+ C+
Sbjct: 13 CGKIFRDVYHLNRHKLSHSGEKPYSC--PVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Score = 71.0 bits (175), Expect = 9e-16
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 236 LTSHACFHPG--------CGKTYTKSSHLKAHLRTHTGE--KPYQCKWKGCGWKFARSDE 285
L H H G CG + + + H+R+H G KPY C+ CG F+R D
Sbjct: 23 LNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ--SCGKGFSRPDH 80
Query: 286 LTRHFRK-HTG 295
L H ++ H+G
Sbjct: 81 LNGHIKQVHSG 91
Score = 59.8 bits (146), Expect = 9e-12
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 263 HTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
+G C + CG F L RH H+G++P+ C
Sbjct: 2 SSGSSGVAC--EICGKIFRDVYHLNRHKLSHSGEKPYSCP 39
Score = 42.9 bits (102), Expect = 1e-05
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 246 CGKTYTKSSHLKAHL-RTHTGEK 267
CGK +++ HL H+ + H+G
Sbjct: 71 CGKGFSRPDHLNGHIKQVHSGPS 93
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 82.9 bits (206), Expect = 2e-20
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRK-HTGD 296
C + + + HLK H R+HT EKPY C C F R D L RH +K H+G+
Sbjct: 8 CTRAFARQEHLKRHYRSHTNEKPYPC--GLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 51.3 bits (124), Expect = 4e-09
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
+ + C+ C FAR + L RH+R HT ++P+ C
Sbjct: 1 RSFVCE--VCTRAFARQEHLKRHYRSHTNEKPYPCG 34
Score = 38.6 bits (91), Expect = 1e-04
Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 246 CGKTYTKSSHLKAHL-RTHTGEK 267
C + +T+ L H + H+G
Sbjct: 36 CNRAFTRRDLLIRHAQKIHSGNL 58
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 82.2 bits (204), Expect = 5e-20
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
C + + + L+ H R H ++P++C + C + + L++H +K GD
Sbjct: 15 CSYSCSSKAALRIHERIHCTDRPFKCNY--CSFDTKQPSNLSKHMKKFHGDMSGPS 68
Score = 66.4 bits (163), Expect = 3e-14
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 261 RTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
+ + P +C C + + L H R H DRPF+C
Sbjct: 2 SSGSSGHPEKCS--ECSYSCSSKAALRIHERIHCTDRPFKCN 41
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 83.3 bits (207), Expect = 7e-20
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRK---HTGDRPFQCK 302
C K + +LK H R HTGEKP++C CG + R + L H + + ++ F C
Sbjct: 13 CHKKFLSKYYLKVHNRKHTGEKPFECPK--CGKCYFRKENLLEHEARNCMNRSEQVFTCS 70
Score = 80.6 bits (200), Expect = 8e-19
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 246 CGKTYTKSSHLKAHLR---THTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
CGK Y + +L H + E+ + C C F R EL H HTG+ P++C
Sbjct: 41 CGKCYFRKENLLEHEARNCMNRSEQVFTCS--VCQETFRRRMELRLHMVSHTGEMPYKCS 98
Score = 73.3 bits (181), Expect = 3e-16
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRH-FRKHTG 295
C +T+ + L+ H+ +HTGE PY+C C +F + +L H + H+G
Sbjct: 72 CQETFRRRMELRLHMVSHTGEMPYKC--SSCSQQFMQKKDLQSHMIKLHSG 120
Score = 61.0 bits (149), Expect = 7e-12
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 263 HTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
+G +C C KF L H RKHTG++PF+C
Sbjct: 2 SSGSSGVEC--PTCHKKFLSKYYLKVHNRKHTGEKPFECP 39
Score = 42.5 bits (101), Expect = 2e-05
Identities = 5/23 (21%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 246 CGKTYTKSSHLKAH-LRTHTGEK 267
C + + + L++H ++ H+G
Sbjct: 100 CSQQFMQKKDLQSHMIKLHSGPS 122
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 81.8 bits (203), Expect = 8e-20
Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 14/79 (17%)
Query: 236 LTSHACFHPG--------CGKTYTKSSHLKAHLRTHTGE----KPYQCKWKGCGWKFARS 283
S H G C KT+ + L H + + + C CG F R
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVC--SKCGKTFTRR 60
Query: 284 DELTRHFRKHTGDRPFQCK 302
+ + RH G + +
Sbjct: 61 NTMARHADNCAGPDGVEGE 79
Score = 68.7 bits (169), Expect = 5e-15
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 255 HLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTG----DRPFQCK 302
+ RTHTGEKPY C C F + L HF+++ F C
Sbjct: 2 SSGSSGRTHTGEKPYAC--SHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCS 51
Score = 58.7 bits (143), Expect = 2e-11
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCG 277
CGKT+T+ + + H G + + G
Sbjct: 53 CGKTFTRRNTMARHADNCAGPDGVEG--ENSG 82
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 80.9 bits (201), Expect = 2e-19
Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 231 GSRKKLTSHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFAR 282
GS CGK+++ SS L H RTHTGEKPY+C CG F +
Sbjct: 1 GSSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKC--DECGKAFIQ 58
Query: 283 SDELTRHFRKHTGDRPF 299
L H R HTG P
Sbjct: 59 RSHLIGHHRVHTGSGPS 75
Score = 74.0 bits (183), Expect = 5e-17
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 252 KSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
S + Y+C CG F+ S +L++H R HTG++P++C
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDE--CGKSFSHSSDLSKHRRTHTGEKPYKCD 50
Score = 32.8 bits (76), Expect = 0.021
Identities = 4/22 (18%), Positives = 7/22 (31%)
Query: 281 ARSDELTRHFRKHTGDRPFQCK 302
S R + R ++C
Sbjct: 1 GSSGSSGRSEWQQRERRRYKCD 22
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 80.2 bits (199), Expect = 3e-19
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 236 LTSHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELT 287
H+ C ++ +L +H HTGEKPY+C CG +F R L
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNI--CGAQFNRPANLK 62
Query: 288 RHFRKHTGDRPF 299
H R H+G++P+
Sbjct: 63 THTRIHSGEKPY 74
Score = 74.4 bits (184), Expect = 3e-17
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 253 SSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
H H +KPY+C C F L H HTG++P++C
Sbjct: 2 GHHHHHHSHMTHSDKPYKC--DRCQASFRYKGNLASHKTVHTGEKPYRCN 49
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 80.2 bits (199), Expect = 3e-19
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 236 LTSHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELT 287
+ + H G CGK +++SS L H R HTGEKPY+C CG F+++ L
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLE--CGKAFSQNSGLI 59
Query: 288 RHFRKHTGDRPF 299
H R HT
Sbjct: 60 NHQRIHTSGPSS 71
Score = 69.4 bits (171), Expect = 2e-15
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 256 LKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
H+GEKPY C CG F+RS L +H R HTG++P++C
Sbjct: 2 SSGSSGIHSGEKPYGCVE--CGKAFSRSSILVQHQRVHTGEKPYKCL 46
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 78.3 bits (194), Expect = 1e-18
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 246 CGKTYTKSSHLKAHLRTHTGE--KPYQCKWKGCGWKFARSDELTRHFRK-HTGDRPF 299
C +T+S +K H+ E + C C AR +L H RK H+ P
Sbjct: 21 CHARFTQSGTMKMHILQKHTENVAKFHCPH--CDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 74.1 bits (183), Expect = 5e-17
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 255 HLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTG--DRPFQCK 302
+ RTH+GEKPY+C C +F +S + H + F C
Sbjct: 2 SSGSSGRTHSGEKPYEC--YICHARFTQSGTMKMHILQKHTENVAKFHCP 49
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 74.6 bits (184), Expect = 1e-17
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHTGDR 297
+P+ C W CG +F RSDEL RH R HTG++
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 48.8 bits (117), Expect = 2e-08
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEK 267
C CGK +T+S L+ H RTHTGEK
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 74.9 bits (185), Expect = 2e-17
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 246 CGKTYTKSSHLKAHLRT--HTGEKPYQCKWKGCGWKFARSDELTRHFRKHTG 295
C + YT S+ H T K Y C + C +F R D +T H +
Sbjct: 16 CSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMTAHVKIIHK 65
Score = 63.7 bits (156), Expect = 2e-13
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 261 RTHTGEKPYQCKWKGCGWKFARSDELTRHFR--KHTGDRPFQCK 302
T GE Y+C K C + RH+ + + C
Sbjct: 3 FTKEGEHTYRC--KVCSRVYTHISNFCRHYVTSHKRNVKVYPCP 44
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 73.2 bits (180), Expect = 4e-17
Identities = 21/36 (58%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 232 SRKKLTSHACFHPGCGKTYTKSSHLKAHLRTHTGEK 267
+KK H C GCGK Y K+SHL+AHLR HTGE+
Sbjct: 4 GKKK--QHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 72.3 bits (177), Expect = 4e-16
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 237 TSHACFHPGCGKTYTKSSHLKAHL-RTHTGEKP---YQCKWKGC---GWKFARSDELTRH 289
+ C +T++ L H+ H G + C W+ C G F +L H
Sbjct: 22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
Query: 290 FRKHTGDRPFQC 301
R HTG++
Sbjct: 82 IRVHTGEKSGPS 93
Score = 56.5 bits (136), Expect = 2e-10
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 233 RKKLTSHACFHPGC---GKTYTKSSHLKAHLRTHTGEKPYQC 271
+ +H C+ C GK++ L H+R HTGEK
Sbjct: 52 GPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 38.8 bits (90), Expect = 3e-04
Identities = 8/41 (19%), Positives = 10/41 (24%), Gaps = 3/41 (7%)
Query: 262 THTGEKPYQCKWKGCGWKFARSDELTRHFRK-HTGDRPFQC 301
+ K C F+ EL H H G
Sbjct: 19 IDEAQLSRPKK--SCDRTFSTMHELVTHVTMEHVGGPEQNN 57
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 66.8 bits (164), Expect = 8e-15
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
+ + TGEKPY CK CG F + L +H R H+G++P
Sbjct: 2 SSGSSGTGEKPYNCKE--CGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 55.3 bits (134), Expect = 1e-10
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCK 272
CGK++ +S L H R H+GEKP
Sbjct: 18 CGKSFRWASCLLKHQRVHSGEKPSGPS 44
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 8e-15
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TGEK Y C K CG F+R+ L +H R H+G++P
Sbjct: 2 SSGSSGTGEKLYNC--KECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 53.7 bits (130), Expect = 4e-10
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK+++++ L H R H+GEKP
Sbjct: 18 CGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.87
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 289 HFRKHTGDRPFQCK 302
TG++ + CK
Sbjct: 3 SGSSGTGEKLYNCK 16
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 67.8 bits (166), Expect = 9e-15
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 246 CGKTYTKSSHLKAHLRTHT---GEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
CG T + + L H R H + C++ CG +F + D + H K +
Sbjct: 13 CGFTCRQKASLNWHQRKHAETVAALRFPCEF--CGKRFEKPDSVAAHRSKSHPALLLAPQ 70
Score = 56.3 bits (136), Expect = 1e-10
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 5/42 (11%)
Query: 263 HTGEKPYQCKWKGCGWKFARSDELTRHFRKHT---GDRPFQC 301
+G QC+ CG+ + L H RKH F C
Sbjct: 2 SSGSSGLQCEI--CGFTCRQKASLNWHQRKHAETVAALRFPC 41
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 2e-14
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ +GE+PY C CG F R L H ++H ++
Sbjct: 3 SGSSGSGERPYGCN--ECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 57.9 bits (141), Expect = 1e-11
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 8/42 (19%)
Query: 238 SHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKPYQC 271
S G CGK + + SHL HL+ H EK
Sbjct: 2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 25.9 bits (58), Expect = 2.8
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 289 HFRKHTGDRPFQCK 302
+G+RP+ C
Sbjct: 3 SGSSGSGERPYGCN 16
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 66.0 bits (162), Expect = 2e-14
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
+ TG++PY+C CG F L H R HTG++P
Sbjct: 3 SGSSGTGQRPYEC--IECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 55.6 bits (135), Expect = 1e-10
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCK 272
CGK + S L H R+HTGEKP
Sbjct: 18 CGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.36
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 288 RHFRKHTGDRPFQCK 302
TG RP++C
Sbjct: 2 SSGSSGTGQRPYECI 16
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 2e-14
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ TGEKPY+C + CG F S L +H H+G+RP
Sbjct: 3 SGSSGTGEKPYKC--QVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 54.4 bits (132), Expect = 2e-10
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK + SSHL H H+GE+P
Sbjct: 18 CGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 28.6 bits (65), Expect = 0.35
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 288 RHFRKHTGDRPFQCK 302
TG++P++C+
Sbjct: 2 SSGSSGTGEKPYKCQ 16
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 65.7 bits (161), Expect = 2e-14
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TGEKP+QC K CG F+ S L +H R H P
Sbjct: 2 SSGSSGTGEKPFQC--KECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 54.5 bits (132), Expect = 2e-10
Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 8/42 (19%)
Query: 238 SHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKPYQC 271
S G CG ++ S L HLR+H P
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 28.7 bits (65), Expect = 0.34
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 289 HFRKHTGDRPFQCK 302
TG++PFQCK
Sbjct: 3 SGSSGTGEKPFQCK 16
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 2e-14
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ +GEKPY+C CG F R L H R HTG RP
Sbjct: 3 SGSSGSGEKPYKCS--ECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 54.8 bits (133), Expect = 2e-10
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK + + +HL H R HTG +P
Sbjct: 18 CGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 28.6 bits (65), Expect = 0.38
Identities = 3/15 (20%), Positives = 8/15 (53%)
Query: 288 RHFRKHTGDRPFQCK 302
+G++P++C
Sbjct: 2 SSGSSGSGEKPYKCS 16
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.3 bits (160), Expect = 3e-14
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TGEKPY+C CG F + T+H R HTG RP
Sbjct: 2 SSGSSGTGEKPYKC--MECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 52.2 bits (126), Expect = 1e-09
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK + +S H R HTG++P
Sbjct: 18 CGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 26.4 bits (59), Expect = 2.1
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 289 HFRKHTGDRPFQCK 302
TG++P++C
Sbjct: 3 SGSSGTGEKPYKCM 16
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 3e-14
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
+ + TGEKPY+C K C F + L +H + HTG++P
Sbjct: 2 SSGSSGTGEKPYEC--KVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 58.3 bits (142), Expect = 1e-11
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCK 272
C K +T+ +HL H +THTGEKP
Sbjct: 18 CSKAFTQKAHLAQHQKTHTGEKPSGPS 44
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 3e-14
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ +GEKPY C CG F S EL RH R HTG++P
Sbjct: 3 SGSSGSGEKPYVC--DYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 54.1 bits (131), Expect = 3e-10
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK + S+ L H R HTGEKP
Sbjct: 18 CGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.39
Identities = 3/15 (20%), Positives = 7/15 (46%)
Query: 288 RHFRKHTGDRPFQCK 302
+G++P+ C
Sbjct: 2 SSGSSGSGEKPYVCD 16
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 65.2 bits (160), Expect = 4e-14
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ TGEKPY+C K CG F+++ L +H R HTG++P
Sbjct: 3 SGSSGTGEKPYEC--KECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 55.2 bits (134), Expect = 1e-10
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK +++++HL H R HTGEKP
Sbjct: 18 CGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.35
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 288 RHFRKHTGDRPFQCK 302
TG++P++CK
Sbjct: 2 SSGSSGTGEKPYECK 16
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 4e-14
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ TGE PY+C CG F+R +L H R H G++P
Sbjct: 3 SGSSGTGENPYEC--HECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 55.6 bits (135), Expect = 1e-10
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK +++ L +H RTH GEKP
Sbjct: 18 CGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.48
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 288 RHFRKHTGDRPFQCK 302
TG+ P++C
Sbjct: 2 SSGSSGTGENPYECH 16
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 4e-14
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ TGE+ Y+C CG FAR L H R HTG++P
Sbjct: 3 SGSSGTGERHYEC--SECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 4e-10
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK + + S L H R HTGEKP
Sbjct: 18 CGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.31
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 288 RHFRKHTGDRPFQCK 302
TG+R ++C
Sbjct: 2 SSGSSGTGERHYECS 16
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 64.8 bits (159), Expect = 4e-14
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TG KPY C CG F L H R HTG+
Sbjct: 2 SSGSSGTGMKPYVC--NECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 56.7 bits (138), Expect = 4e-11
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK + S+L H RTHTGE
Sbjct: 18 CGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 27.8 bits (63), Expect = 0.57
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 288 RHFRKHTGDRPFQCK 302
TG +P+ C
Sbjct: 2 SSGSSGTGMKPYVCN 16
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 5e-14
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ TGEKPY+C C F+ LT+H R H+G++P
Sbjct: 3 SGSSGTGEKPYEC--DVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 54.1 bits (131), Expect = 4e-10
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
C K ++ + L H R H+GEKP
Sbjct: 18 CRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.8
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 289 HFRKHTGDRPFQCK 302
TG++P++C
Sbjct: 3 SGSSGTGEKPYECD 16
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 5e-14
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TGEKP+ C CG F+ L +H R HTG++P
Sbjct: 2 SSGSSGTGEKPFDC--IDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 54.1 bits (131), Expect = 3e-10
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK ++ L H R HTGEKP
Sbjct: 18 CGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.1
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 289 HFRKHTGDRPFQCK 302
TG++PF C
Sbjct: 3 SGSSGTGEKPFDCI 16
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 5e-14
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ TGEKPY+C CG F+ L+ H R H+G +P
Sbjct: 3 SGSSGTGEKPYEC--SVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 54.8 bits (133), Expect = 2e-10
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK ++ L H R H+G+KP
Sbjct: 18 CGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 27.1 bits (61), Expect = 1.2
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 288 RHFRKHTGDRPFQCK 302
TG++P++C
Sbjct: 2 SSGSSGTGEKPYECS 16
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.9 bits (159), Expect = 5e-14
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + GEKPY C CG F+ L H R H+G++P
Sbjct: 2 SSGSSGAGEKPYGC--SECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 56.4 bits (137), Expect = 5e-11
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK ++ S+L H+RTH+GEKP
Sbjct: 18 CGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 29.1 bits (66), Expect = 0.27
Identities = 3/15 (20%), Positives = 6/15 (40%)
Query: 288 RHFRKHTGDRPFQCK 302
G++P+ C
Sbjct: 2 SSGSSGAGEKPYGCS 16
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 64.8 bits (159), Expect = 5e-14
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ TGEKP++C CG F+ S +L H R HTG++P
Sbjct: 3 SGSSGTGEKPFEC--AECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 55.6 bits (135), Expect = 8e-11
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK+++ SS L H R HTGEKP
Sbjct: 18 CGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.15
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 288 RHFRKHTGDRPFQCK 302
TG++PF+C
Sbjct: 2 SSGSSGTGEKPFECA 16
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 6e-14
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
+ TGEKPY C CG F S L +H R HT +
Sbjct: 3 SGSSGTGEKPYSC--NVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 55.6 bits (135), Expect = 8e-11
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCK 272
CGK + S+HL HLR HT E
Sbjct: 18 CGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 27.1 bits (61), Expect = 1.1
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 288 RHFRKHTGDRPFQCK 302
TG++P+ C
Sbjct: 2 SSGSSGTGEKPYSCN 16
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 6e-14
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TGEKPY+C CG F + +L H R HTG+ P
Sbjct: 2 SSGSSGTGEKPYEC--SDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 55.2 bits (134), Expect = 1e-10
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK++ K S L H R HTGE P
Sbjct: 18 CGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 26.3 bits (59), Expect = 1.9
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 289 HFRKHTGDRPFQCK 302
TG++P++C
Sbjct: 3 SGSSGTGEKPYECS 16
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 6e-14
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + +GEKPY+C CG + R +L H R HTG++
Sbjct: 2 SSGSSGSGEKPYKC--VECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 55.2 bits (134), Expect = 1e-10
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK Y + L H R HTGEK
Sbjct: 18 CGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 26.0 bits (58), Expect = 2.7
Identities = 3/14 (21%), Positives = 8/14 (57%)
Query: 289 HFRKHTGDRPFQCK 302
+G++P++C
Sbjct: 3 SGSSGSGEKPYKCV 16
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 6e-14
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TGEKPY C CG F + L RH R HTG++P
Sbjct: 2 SSGSSGTGEKPYIC--NECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 56.4 bits (137), Expect = 4e-11
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK++ + SHL H R HTGEKP
Sbjct: 18 CGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 2.6
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 289 HFRKHTGDRPFQCK 302
TG++P+ C
Sbjct: 3 SGSSGTGEKPYICN 16
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 7e-14
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ TGE+P++C CG F +S L +H R HTG++P
Sbjct: 3 SGSSGTGERPHKC--NECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 54.8 bits (133), Expect = 2e-10
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK++ +S+HL H R HTGEKP
Sbjct: 18 CGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.24
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 288 RHFRKHTGDRPFQCK 302
TG+RP +C
Sbjct: 2 SSGSSGTGERPHKCN 16
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 7e-14
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TG KPYQC CG F+++ +L RH R HTG++P
Sbjct: 2 SSGSSGTGGKPYQC--NECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 54.1 bits (131), Expect = 3e-10
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK ++++S L H R HTGEKP
Sbjct: 18 CGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.6
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 289 HFRKHTGDRPFQCK 302
TG +P+QC
Sbjct: 3 SGSSGTGGKPYQCN 16
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 7e-14
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ TGEKP++C CG + + LT+H R HTG++P
Sbjct: 3 SGSSGTGEKPFKCG--ECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 54.8 bits (133), Expect = 2e-10
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK+Y + HL H R HTGEKP
Sbjct: 18 CGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.16
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 288 RHFRKHTGDRPFQCK 302
TG++PF+C
Sbjct: 2 SSGSSGTGEKPFKCG 16
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.4 bits (158), Expect = 7e-14
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + +GEKP++C K CG F ++ L H R HTG++P
Sbjct: 2 SSGSSGSGEKPFKC--KECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 56.4 bits (137), Expect = 4e-11
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK + ++ HL +HLR HTGEKP
Sbjct: 18 CGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.17
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 288 RHFRKHTGDRPFQCK 302
+G++PF+CK
Sbjct: 2 SSGSSGSGEKPFKCK 16
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 7e-14
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TGEKPY C CG F L +H + HT +P
Sbjct: 2 SSGSSGTGEKPYIC--AECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 54.4 bits (132), Expect = 3e-10
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK +T S+L H + HT +KP
Sbjct: 18 CGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 26.3 bits (59), Expect = 2.4
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 289 HFRKHTGDRPFQCK 302
TG++P+ C
Sbjct: 3 SGSSGTGEKPYICA 16
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.4 bits (158), Expect = 7e-14
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TGEKP++C CG F L RH HT ++P
Sbjct: 2 SSGSSGTGEKPFKCD--ICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 54.8 bits (133), Expect = 1e-10
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK++ S L H HT EKP
Sbjct: 18 CGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 25.9 bits (58), Expect = 2.6
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 289 HFRKHTGDRPFQCK 302
TG++PF+C
Sbjct: 3 SGSSGTGEKPFKCD 16
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 64.1 bits (157), Expect = 7e-14
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + +GEKP++C + CG F + + H R H+G++P
Sbjct: 2 SSGSSGSGEKPFKC--EECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 55.3 bits (134), Expect = 1e-10
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCG 277
CGK + +S +H R+H+GEKP G
Sbjct: 18 CGKGFYTNSQCYSHQRSHSGEKPSGPS---SG 46
Score = 27.1 bits (61), Expect = 1.3
Identities = 4/14 (28%), Positives = 9/14 (64%)
Query: 289 HFRKHTGDRPFQCK 302
+G++PF+C+
Sbjct: 3 SGSSGSGEKPFKCE 16
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.4 bits (158), Expect = 7e-14
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TGEKPY+C CG F R+ L RH HTG++P
Sbjct: 2 SSGSSGTGEKPYKC--HECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 55.2 bits (134), Expect = 1e-10
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK + ++SHL H HTGEKP
Sbjct: 18 CGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.22
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 288 RHFRKHTGDRPFQCK 302
TG++P++C
Sbjct: 2 SSGSSGTGEKPYKCH 16
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 64.0 bits (157), Expect = 8e-14
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TGEKPY+C C F L H R HTG+
Sbjct: 2 SSGSSGTGEKPYEC--NECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 55.6 bits (135), Expect = 1e-10
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
C K + S+L H RTHTGE
Sbjct: 18 CQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 26.3 bits (59), Expect = 2.2
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 289 HFRKHTGDRPFQCK 302
TG++P++C
Sbjct: 3 SGSSGTGEKPYECN 16
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 8e-14
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
+ + +G+KPY+CK C F + L +H R HTG+R
Sbjct: 2 SSGSSGSGKKPYECK--ECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 57.2 bits (139), Expect = 3e-11
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCK 272
C KT+ + HL H R HTGE+
Sbjct: 18 CRKTFIQIGHLNQHKRVHTGERSSGPS 44
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 64.1 bits (157), Expect = 8e-14
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ TGEK Y+C CG F+R+ +L++H + HTG++P
Sbjct: 3 SGSSGTGEKRYKCN--ECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 4e-10
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK ++++S L H + HTGEKP
Sbjct: 18 CGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.74
Identities = 3/15 (20%), Positives = 7/15 (46%)
Query: 288 RHFRKHTGDRPFQCK 302
TG++ ++C
Sbjct: 2 SSGSSGTGEKRYKCN 16
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 8e-14
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
+ TGEKPY+C CG F + +L H + HTG++P
Sbjct: 3 SGSSGTGEKPYEC--SICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 56.4 bits (137), Expect = 4e-11
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCK 272
CGK++TK S L H + HTGEKP
Sbjct: 18 CGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.0
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 288 RHFRKHTGDRPFQCK 302
TG++P++C
Sbjct: 2 SSGSSGTGEKPYECS 16
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 64.1 bits (157), Expect = 8e-14
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TGEKPY+C + CG F +L H HTG++P
Sbjct: 2 SSGSSGTGEKPYKC--EECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 54.5 bits (132), Expect = 2e-10
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK + L H HTGEKP
Sbjct: 18 CGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 4.4
Identities = 4/14 (28%), Positives = 9/14 (64%)
Query: 289 HFRKHTGDRPFQCK 302
TG++P++C+
Sbjct: 3 SGSSGTGEKPYKCE 16
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 64.1 bits (157), Expect = 8e-14
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRK-HTGDRPFQC 301
+ + TG+KPY+C CG F ++ L RH+R HTG++P
Sbjct: 2 SSGSSGTGKKPYEC--IECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 49.9 bits (120), Expect = 1e-08
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 246 CGKTYTKSSHLKAHLR-THTGEKPYQC 271
CGK + +++ L H R HTGEKP
Sbjct: 18 CGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 27.5 bits (62), Expect = 0.80
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 289 HFRKHTGDRPFQCK 302
TG +P++C
Sbjct: 3 SGSSGTGKKPYECI 16
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 64.1 bits (157), Expect = 9e-14
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TG+KP++C CG F L H R HTG++
Sbjct: 2 SSGSSGTGQKPFEC--THCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 54.5 bits (132), Expect = 2e-10
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK++ +L H R HTGEK
Sbjct: 18 CGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 26.7 bits (60), Expect = 1.3
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 289 HFRKHTGDRPFQCK 302
TG +PF+C
Sbjct: 3 SGSSGTGQKPFECT 16
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.0 bits (157), Expect = 9e-14
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TGEKP++C C F L H R HTG++P
Sbjct: 2 SSGSSGTGEKPFEC--SECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 54.8 bits (133), Expect = 2e-10
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
C K + S+L H RTHTGEKP
Sbjct: 18 CQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.49
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 288 RHFRKHTGDRPFQCK 302
TG++PF+C
Sbjct: 2 SSGSSGTGEKPFECS 16
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 9e-14
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ TGEKP++C + CG F+ + +L H R HTG+ P
Sbjct: 3 SGSSGTGEKPHEC--RECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 54.1 bits (131), Expect = 3e-10
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK+++ +S L H R HTGE P
Sbjct: 18 CGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 28.7 bits (65), Expect = 0.29
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 288 RHFRKHTGDRPFQCK 302
TG++P +C+
Sbjct: 2 SSGSSGTGEKPHECR 16
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 9e-14
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TG+KPY+C CG F ++ L RH HTG++P
Sbjct: 2 SSGSSGTGKKPYKC--NECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 56.0 bits (136), Expect = 7e-11
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK +T++SHL H HTGEKP
Sbjct: 18 CGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 2.1
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 289 HFRKHTGDRPFQCK 302
TG +P++C
Sbjct: 3 SGSSGTGKKPYKCN 16
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 9e-14
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ TGEKPY+C CG F R L H + HTG+R
Sbjct: 3 SGSSGTGEKPYKC--SDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 56.0 bits (136), Expect = 6e-11
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK +T+ S L H ++HTGE+
Sbjct: 18 CGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 26.7 bits (60), Expect = 1.8
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 288 RHFRKHTGDRPFQCK 302
TG++P++C
Sbjct: 2 SSGSSGTGEKPYKCS 16
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 9e-14
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TGEKPY+C CG F ++ L RH HTG++P
Sbjct: 2 SSGSSGTGEKPYKC--NECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 56.0 bits (136), Expect = 6e-11
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK +T++SHL H HTGEKP
Sbjct: 18 CGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 2.1
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 289 HFRKHTGDRPFQCK 302
TG++P++C
Sbjct: 3 SGSSGTGEKPYKCN 16
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 1e-13
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TG K ++C CG F R L+ H + HTG++P
Sbjct: 2 SSGSSGTGGKHFEC--TECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 54.4 bits (132), Expect = 2e-10
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK +T+ S L H + HTGEKP
Sbjct: 18 CGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.97
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 288 RHFRKHTGDRPFQCK 302
TG + F+C
Sbjct: 2 SSGSSGTGGKHFECT 16
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 1e-13
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ +GEKP+QC + CG +F ++ L H R HTG++P
Sbjct: 3 SGSSGSGEKPFQC--EECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 57.2 bits (139), Expect = 2e-11
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK +T++SHL +H R HTGEKP
Sbjct: 18 CGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 28.7 bits (65), Expect = 0.29
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 288 RHFRKHTGDRPFQCK 302
+G++PFQC+
Sbjct: 2 SSGSSGSGEKPFQCE 16
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 1e-13
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
+ TGEKPY+C CG F+ LT H HTG +P
Sbjct: 3 SGSSGTGEKPYEC--NQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 54.8 bits (133), Expect = 2e-10
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCK 272
CGK ++ S L H HTG+KP
Sbjct: 18 CGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 27.5 bits (62), Expect = 0.77
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 288 RHFRKHTGDRPFQCK 302
TG++P++C
Sbjct: 2 SSGSSGTGEKPYECN 16
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 63.7 bits (156), Expect = 1e-13
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TGEKP++C CG F+R L H + HTG++P
Sbjct: 2 SSGSSGTGEKPFKC--VECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 55.2 bits (134), Expect = 1e-10
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK +++ S L H + HTGEKP
Sbjct: 18 CGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 2.1
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 288 RHFRKHTGDRPFQCK 302
TG++PF+C
Sbjct: 2 SSGSSGTGEKPFKCV 16
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 1e-13
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ TGE+ Y+C CG F + L+ H R H G++P
Sbjct: 3 SGSSGTGERHYEC--SECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 54.5 bits (132), Expect = 2e-10
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK + + S L H R H GEKP
Sbjct: 18 CGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.3
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 289 HFRKHTGDRPFQCK 302
TG+R ++C
Sbjct: 3 SGSSGTGERHYECS 16
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 64.0 bits (155), Expect = 1e-13
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDR 297
CG K S LK H+RTHT +PY C C + F LT+H + +
Sbjct: 7 CGIRXKKPSMLKKHIRTHTDVRPYHC--TYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 36.6 bits (84), Expect = 7e-04
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 269 YQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
Y C+ CG + + L +H R HT RP+ C
Sbjct: 2 YICE--ECGIRXKKPSMLKKHIRTHTDVRPYHCT 33
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 1e-13
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TGEKPY+C CG F ++ L RH R HTG +P
Sbjct: 2 SSGSSGTGEKPYKC--NECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 56.4 bits (137), Expect = 4e-11
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK +T++SHL H R HTG KP
Sbjct: 18 CGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 26.3 bits (59), Expect = 2.5
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 289 HFRKHTGDRPFQCK 302
TG++P++C
Sbjct: 3 SGSSGTGEKPYKCN 16
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 1e-13
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TGEKPY+C CG F ++ L RH HTG++P
Sbjct: 2 SSGSSGTGEKPYKC--NECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 55.6 bits (135), Expect = 9e-11
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK +T++SHL H HTGEKP
Sbjct: 18 CGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.41
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 288 RHFRKHTGDRPFQCK 302
TG++P++C
Sbjct: 2 SSGSSGTGEKPYKCN 16
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 1e-13
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TGEKPY C + CG F +L H R HTG++P
Sbjct: 2 SSGSSGTGEKPYNC--EECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 4e-10
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK + S L+ H R HTGEKP
Sbjct: 18 CGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.57
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 288 RHFRKHTGDRPFQCK 302
TG++P+ C+
Sbjct: 2 SSGSSGTGEKPYNCE 16
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 1e-13
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TGEKPY+C C F LT H R HTG++P
Sbjct: 2 SSGSSGTGEKPYKCDV--CHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 4e-10
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
C K++ S L H R HTGEKP
Sbjct: 18 CHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 4.5
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 289 HFRKHTGDRPFQCK 302
TG++P++C
Sbjct: 3 SGSSGTGEKPYKCD 16
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 1e-13
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ TGEKPY+C CG F+++ +L RH R HTG++P
Sbjct: 3 SGSSGTGEKPYKC--NECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 4e-10
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK ++++S L H R HTGEKP
Sbjct: 18 CGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.59
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 288 RHFRKHTGDRPFQCK 302
TG++P++C
Sbjct: 2 SSGSSGTGEKPYKCN 16
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 63.3 bits (155), Expect = 1e-13
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TG KPY C C F+ +L H R HTG +P
Sbjct: 2 SSGSSGTGVKPYGC--SQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 55.6 bits (135), Expect = 8e-11
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
C KT++ S L H R+HTG KP
Sbjct: 18 CAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 27.9 bits (63), Expect = 0.61
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 288 RHFRKHTGDRPFQCK 302
TG +P+ C
Sbjct: 2 SSGSSGTGVKPYGCS 16
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 2e-13
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TGEKPY+C + CG + L H + HTG+RP
Sbjct: 2 SSGSSGTGEKPYKC--EKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 54.8 bits (133), Expect = 1e-10
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK Y +L H + HTGE+P
Sbjct: 18 CGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 25.6 bits (57), Expect = 3.6
Identities = 4/14 (28%), Positives = 9/14 (64%)
Query: 289 HFRKHTGDRPFQCK 302
TG++P++C+
Sbjct: 3 SGSSGTGEKPYKCE 16
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 2e-13
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + +GEKPY C CG F++ L+ H R HTG++P
Sbjct: 2 SSGSSGSGEKPYGC--NECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 56.4 bits (137), Expect = 4e-11
Identities = 16/26 (61%), Positives = 19/26 (73%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGKT+++ S L AH RTHTGEKP
Sbjct: 18 CGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 26.0 bits (58), Expect = 3.2
Identities = 3/14 (21%), Positives = 7/14 (50%)
Query: 289 HFRKHTGDRPFQCK 302
+G++P+ C
Sbjct: 3 SGSSGSGEKPYGCN 16
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 2e-13
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TGEKPY+C CG FA+ LT+H R HTG++P
Sbjct: 2 SSGSSGTGEKPYRC--GECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 54.0 bits (131), Expect = 3e-10
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK + + ++L H R HTGEKP
Sbjct: 18 CGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.60
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 288 RHFRKHTGDRPFQCK 302
TG++P++C
Sbjct: 2 SSGSSGTGEKPYRCG 16
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 2e-13
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TGE P+ C CG F L H + HTG+RP
Sbjct: 2 SSGSSGTGENPFIC--SECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 53.7 bits (130), Expect = 4e-10
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK +T ++L H + HTGE+P
Sbjct: 18 CGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 26.7 bits (60), Expect = 1.7
Identities = 5/14 (35%), Positives = 6/14 (42%)
Query: 289 HFRKHTGDRPFQCK 302
TG+ PF C
Sbjct: 3 SGSSGTGENPFICS 16
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 2e-13
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ GEK Y+C CG +F++S L H R HTG++P
Sbjct: 3 SGSSGMGEKCYKC--DVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 56.8 bits (138), Expect = 4e-11
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK +++SSHL+ H R HTGEKP
Sbjct: 18 CGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 26.0 bits (58), Expect = 3.1
Identities = 2/14 (14%), Positives = 6/14 (42%)
Query: 289 HFRKHTGDRPFQCK 302
G++ ++C
Sbjct: 3 SGSSGMGEKCYKCD 16
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 2e-13
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + + EKPY+C + CG + R L H R H G++
Sbjct: 2 SSGSSGSVEKPYKC--EDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 53.7 bits (130), Expect = 4e-10
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK Y + +L H R H GEK
Sbjct: 18 CGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 25.1 bits (56), Expect = 5.4
Identities = 2/14 (14%), Positives = 8/14 (57%)
Query: 289 HFRKHTGDRPFQCK 302
+ ++P++C+
Sbjct: 3 SGSSGSVEKPYKCE 16
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 2e-13
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ TGEKPY+C CG F L H H+G++P
Sbjct: 3 SGSSGTGEKPYKC--NECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 54.5 bits (132), Expect = 2e-10
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK + S L H TH+GEKP
Sbjct: 18 CGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.2
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 288 RHFRKHTGDRPFQCK 302
TG++P++C
Sbjct: 2 SSGSSGTGEKPYKCN 16
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 2e-13
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + +GEKPY+C CG F ++ LT H+R HTG++P
Sbjct: 2 SSGSSGSGEKPYKC--NECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 56.0 bits (136), Expect = 7e-11
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK +T++SHL H R HTGEKP
Sbjct: 18 CGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 27.8 bits (63), Expect = 0.58
Identities = 3/15 (20%), Positives = 8/15 (53%)
Query: 288 RHFRKHTGDRPFQCK 302
+G++P++C
Sbjct: 2 SSGSSGSGEKPYKCN 16
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 62.9 bits (154), Expect = 2e-13
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + +GEKPY+C CG F L H R H G
Sbjct: 2 SSGSSGSGEKPYEC--NECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 52.9 bits (128), Expect = 8e-10
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK + S L H RTH G
Sbjct: 18 CGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 27.9 bits (63), Expect = 0.57
Identities = 3/15 (20%), Positives = 8/15 (53%)
Query: 288 RHFRKHTGDRPFQCK 302
+G++P++C
Sbjct: 2 SSGSSGSGEKPYECN 16
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 3e-13
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ TGEKPY+C CG F + L+RH R HTG++P
Sbjct: 3 SGSSGTGEKPYKC--NECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 54.4 bits (132), Expect = 3e-10
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK + +S+L H R HTGEKP
Sbjct: 18 CGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.80
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 288 RHFRKHTGDRPFQCK 302
TG++P++C
Sbjct: 2 SSGSSGTGEKPYKCN 16
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 3e-13
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TGEKPY+C CG F LT H HTG++P
Sbjct: 2 SSGSSGTGEKPYKC--NECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 53.3 bits (129), Expect = 6e-10
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK + S+L H HTGEKP
Sbjct: 18 CGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 3.7
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 289 HFRKHTGDRPFQCK 302
TG++P++C
Sbjct: 3 SGSSGTGEKPYKCN 16
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.6 bits (153), Expect = 3e-13
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TGEKPY+C CG F L H + HTG+R
Sbjct: 2 SSGSSGTGEKPYKC--SDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 55.2 bits (134), Expect = 1e-10
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK++T S L+ H + HTGE+
Sbjct: 18 CGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 25.6 bits (57), Expect = 4.7
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 289 HFRKHTGDRPFQCK 302
TG++P++C
Sbjct: 3 SGSSGTGEKPYKCS 16
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 62.5 bits (153), Expect = 3e-13
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 261 RTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+GE PY+C CG F R D+L H R H G+
Sbjct: 3 SGSSGENPYECS--ECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 54.1 bits (131), Expect = 3e-10
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK + + L +H RTH GE
Sbjct: 16 CGKAFNRKDQLISHQRTHAGESGPSS 41
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.6 bits (153), Expect = 3e-13
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + GEKPYQC CG F+ S LT+H+ HT ++P
Sbjct: 2 SSGSSGEGEKPYQCS--ECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 54.9 bits (133), Expect = 1e-10
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 238 SHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKPYQC 271
S G CGK+++ S L H THT EKP
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 25.2 bits (56), Expect = 5.0
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 289 HFRKHTGDRPFQCK 302
G++P+QC
Sbjct: 3 SGSSGEGEKPYQCS 16
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 3e-13
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TG KPY C CG F+ LT H HTG++P
Sbjct: 2 SSGSSGTGVKPYMC--NECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 52.9 bits (128), Expect = 8e-10
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK ++ S L H HTGEKP
Sbjct: 18 CGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.96
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 288 RHFRKHTGDRPFQCK 302
TG +P+ C
Sbjct: 2 SSGSSGTGVKPYMCN 16
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 3e-13
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TGEKPY+C CG F ++ L H R HTG +P
Sbjct: 2 SSGSSGTGEKPYKC--NECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 55.6 bits (135), Expect = 8e-11
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK +T++SHL H R HTG KP
Sbjct: 18 CGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 27.9 bits (63), Expect = 0.52
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 288 RHFRKHTGDRPFQCK 302
TG++P++C
Sbjct: 2 SSGSSGTGEKPYKCN 16
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 3e-13
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TGE+PY C CG F L +H + HTG++P
Sbjct: 2 SSGSSGTGERPYIC--TVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 54.4 bits (132), Expect = 3e-10
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK +T S+L H + HTGEKP
Sbjct: 18 CGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 27.8 bits (63), Expect = 0.72
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 288 RHFRKHTGDRPFQCK 302
TG+RP+ C
Sbjct: 2 SSGSSGTGERPYICT 16
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 62.1 bits (152), Expect = 4e-13
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TGE PY+C CG F+R D+L H + H+G
Sbjct: 2 SSGSSGTGENPYECC--ECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 52.9 bits (128), Expect = 9e-10
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 238 SHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKPYQC 271
S G CGK +++ L +H +TH+G+
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.1 bits (152), Expect = 4e-13
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TGEKPY+C CG F L H + HTG++P
Sbjct: 2 SSGSSGTGEKPYRC--AECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 54.4 bits (132), Expect = 2e-10
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK +T S+L H + HTGEKP
Sbjct: 18 CGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 3.3
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 288 RHFRKHTGDRPFQCK 302
TG++P++C
Sbjct: 2 SSGSSGTGEKPYRCA 16
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 61.4 bits (150), Expect = 7e-13
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPF 299
+ GEKPY+C CG F++ L H R HTG P
Sbjct: 1 GSSGSSGGEKPYRC--DQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 50.6 bits (122), Expect = 5e-09
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPY 269
CGK +++ L H+R HTG P
Sbjct: 17 CGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 26.4 bits (59), Expect = 1.6
Identities = 3/14 (21%), Positives = 7/14 (50%)
Query: 289 HFRKHTGDRPFQCK 302
G++P++C
Sbjct: 2 SSGSSGGEKPYRCD 15
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 7e-13
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ +GEKP++C + CG +F ++ +L H R HTG++P
Sbjct: 3 SGSSGSGEKPFKC--EECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 56.4 bits (137), Expect = 4e-11
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK +T++S L +H R HTGEKP
Sbjct: 18 CGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.43
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 288 RHFRKHTGDRPFQCK 302
+G++PF+C+
Sbjct: 2 SSGSSGSGEKPFKCE 16
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 8e-13
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + G+K ++C C F +S LT H R HTG++P
Sbjct: 2 SSGSSGAGKKLFKC--NECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 54.8 bits (133), Expect = 1e-10
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
C KT+T+SS L H R HTGEKP
Sbjct: 18 CKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 25.5 bits (57), Expect = 4.8
Identities = 3/14 (21%), Positives = 5/14 (35%)
Query: 289 HFRKHTGDRPFQCK 302
G + F+C
Sbjct: 3 SGSSGAGKKLFKCN 16
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 9e-13
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + TGEKP +C CG F +L H R H D+
Sbjct: 2 SSGSSGTGEKPCKC--TECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 53.7 bits (130), Expect = 4e-10
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK + S L H RTH +K
Sbjct: 18 CGKAFCWKSQLIMHQRTHVDDKHSGP 43
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 61.1 bits (149), Expect = 1e-12
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRK-HTGDRPFQCK 302
+ + + KPY C + CG F+R D L H ++ HT +RP +C+
Sbjct: 2 SSGSSGSVGKPYIC--QSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
Score = 54.5 bits (132), Expect = 2e-10
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 246 CGKTYTKSSHLKAHL-RTHTGEKPYQCKWKGCGWKFA 281
CGK +++ HL H+ + HT E+P++C + +
Sbjct: 18 CGKGFSRPDHLNGHIKQVHTSERPHKC--QVWVSGPS 52
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 60.6 bits (148), Expect = 2e-12
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPF 299
+ GEKPY C + CG +F L H R HTG P
Sbjct: 1 GSSGSSGGEKPYPC--EICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 53.3 bits (129), Expect = 5e-10
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPY 269
CG + LK+HLR HTG P
Sbjct: 17 CGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 25.2 bits (56), Expect = 5.2
Identities = 3/14 (21%), Positives = 7/14 (50%)
Query: 289 HFRKHTGDRPFQCK 302
G++P+ C+
Sbjct: 2 SSGSSGGEKPYPCE 15
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 2e-12
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ +GE+P++C CG F R L H R H+ ++
Sbjct: 3 SGSSGSGERPFKCN--ECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 56.8 bits (138), Expect = 3e-11
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 238 SHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKPYQC 271
S G CGK + + SHL HLR H+ EK
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 25.6 bits (57), Expect = 4.7
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 288 RHFRKHTGDRPFQCK 302
+G+RPF+C
Sbjct: 2 SSGSSGSGERPFKCN 16
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 59.8 bits (146), Expect = 2e-12
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPF 299
+ GEKPY+C + CG +F + L H HTG P
Sbjct: 2 SSGSSGGEKPYKC--ETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 56.0 bits (136), Expect = 6e-11
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPY 269
CG + + +HL+AH+ HTG P
Sbjct: 17 CGARFVQVAHLRAHVLIHTGSGPS 40
Score = 25.9 bits (58), Expect = 2.8
Identities = 3/14 (21%), Positives = 8/14 (57%)
Query: 289 HFRKHTGDRPFQCK 302
G++P++C+
Sbjct: 2 SSGSSGGEKPYKCE 15
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 59.5 bits (145), Expect = 3e-12
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + GEK ++C + C F+++ L H H G++P
Sbjct: 2 SSGSSGMGEKTWKC--RECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 55.2 bits (134), Expect = 1e-10
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 8/42 (19%)
Query: 238 SHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKPYQC 271
S G C ++++S L+ H H GEKP
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 59.5 bits (145), Expect = 4e-12
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ GE+ ++C CG F ++ +H R HTG++P
Sbjct: 3 SGSSGHGERGHRC--SDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 51.0 bits (123), Expect = 4e-09
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK + ++S+ H R HTGEKP
Sbjct: 18 CGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 3.5
Identities = 3/15 (20%), Positives = 5/15 (33%)
Query: 288 RHFRKHTGDRPFQCK 302
G+R +C
Sbjct: 2 SSGSSGHGERGHRCS 16
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 59.1 bits (144), Expect = 5e-12
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ T K Y C CG F R LTRH + HT
Sbjct: 3 SGSSGTDSKSYNC--NECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 44.1 bits (105), Expect = 8e-07
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
CGK +T+ HL H + HT +
Sbjct: 18 CGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 27.9 bits (63), Expect = 0.56
Identities = 2/14 (14%), Positives = 4/14 (28%)
Query: 289 HFRKHTGDRPFQCK 302
T + + C
Sbjct: 3 SGSSGTDSKSYNCN 16
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 58.7 bits (143), Expect = 7e-12
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + G PY+C C F+ L H R HT ++P
Sbjct: 2 SSGSSGAGVNPYKCSQ--CEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 54.9 bits (133), Expect = 1e-10
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 8/42 (19%)
Query: 238 SHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKPYQC 271
S G C K+++ L H R HT EKP
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 58.1 bits (141), Expect = 9e-12
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKH 293
R TG KP+QC C F+RSD L H ++H
Sbjct: 2 STRGSTGIKPFQC--PDCDRSFSRSDHLALHRKRH 34
Score = 34.2 bits (79), Expect = 0.003
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 244 PGCGKTYTKSSHLKAHLRTH 263
P C +++++S HL H + H
Sbjct: 15 PDCDRSFSRSDHLALHRKRH 34
Score = 33.5 bits (77), Expect = 0.006
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 289 HFRKHTGDRPFQCK 302
R TG +PFQC
Sbjct: 2 STRGSTGIKPFQCP 15
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 57.6 bits (140), Expect = 2e-11
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ + K +QC CG F L +H R HTG++P
Sbjct: 3 SGSSGSSTKSHQC--HECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 52.9 bits (128), Expect = 7e-10
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 238 SHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKPYQC 271
S CG+ +T SHL H R HTGEKP
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 55.6 bits (135), Expect = 1e-10
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 261 RTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+GEKP+ C C F+ L H + H ++P
Sbjct: 3 SGSSGEKPFGCS--CCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 54.8 bits (133), Expect = 2e-10
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
C K ++ S+L H +TH EKP
Sbjct: 16 CEKAFSSKSYLLVHQQTHAEEKPSGP 41
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 53.7 bits (130), Expect = 4e-10
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 261 RTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPF 299
+G++ Y+C+ CG F + LT H R HTG P
Sbjct: 3 SGSSGQRVYECQ--ECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 48.3 bits (116), Expect = 3e-08
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPY 269
CGK++ + L H R HTG P
Sbjct: 16 CGKSFRQKGSLTLHERIHTGSGPS 39
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 53.7 bits (130), Expect = 4e-10
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+ +GEK + C CG F L H R H G++
Sbjct: 3 SGSSGSGEKSHTC--DECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 49.9 bits (120), Expect = 1e-08
Identities = 13/42 (30%), Positives = 15/42 (35%), Gaps = 8/42 (19%)
Query: 238 SHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKPYQC 271
S G CGK + S L+ H R H GEK
Sbjct: 2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 53.4 bits (128), Expect = 6e-10
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 10/52 (19%)
Query: 220 PSKTKTRERRSGSRKKLTSHACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQC 271
S + R R+ AC CGK + HL H +H+GEKPY
Sbjct: 2 SSGSSGRTRKQ--------VACEI--CGKIFRDVYHLNRHKLSHSGEKPYSS 43
Score = 48.4 bits (115), Expect = 3e-08
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 261 RTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCKP 303
+ K C+ CG F L RH H+G++P+ P
Sbjct: 5 SSGRTRKQVACEI--CGKIFRDVYHLNRHKLSHSGEKPYSSGP 45
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 55.2 bits (132), Expect = 7e-10
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 251 TKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFR--KHTGDRPFQCKPN 304
+ S K + TG ++CK C + ELT H H D + N
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKD--CSAAYDTLVELTVHMNETGHYRDDNHETDNN 55
Score = 42.4 bits (99), Expect = 2e-05
Identities = 10/60 (16%), Positives = 16/60 (26%), Gaps = 3/60 (5%)
Query: 246 CGKTYTKSSHLKAHLRT--HTGEKPYQC-KWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
C Y L H+ H + ++ W R L K + +C
Sbjct: 25 CSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCM 84
Score = 38.2 bits (88), Expect = 6e-04
Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 4/57 (7%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRK--HTGDRPFQ 300
+ + L +K +C + CG F +L+ H K H
Sbjct: 58 KRWSKPRKRSLLEMEGKEDAQKVLKCMY--CGHSFESLQDLSVHMIKTKHYQKVSGP 112
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 51.6 bits (124), Expect = 2e-09
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 261 RTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQC 301
+GEKPY C C F+ ++ L +H + HT
Sbjct: 3 SGSSGEKPYSC--AECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 43.9 bits (104), Expect = 1e-06
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQC 271
C +T++ ++ L H + HT +
Sbjct: 16 CKETFSDNNRLVQHQKMHTVKSGPSS 41
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 50.7 bits (122), Expect = 4e-09
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPF 299
+ GE PY C CG F + L H R + P
Sbjct: 1 GSSGSSGGETPYLC--GQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 49.2 bits (118), Expect = 2e-08
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPY 269
CGK++T+ L H R+ + P
Sbjct: 17 CGKSFTQRGSLAVHQRSCSQSGPS 40
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 45.4 bits (107), Expect = 3e-07
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHT 294
++PY C GC F R+ +L RH + H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 31.5 bits (71), Expect = 0.025
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHT 264
++C HPGC K + ++ L H ++H
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKSHQ 29
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 45.6 bits (108), Expect = 3e-07
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 258 AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRP 298
+ + GE P++C C F + + L +H R H
Sbjct: 2 SSGSSGAGENPFKC--SKCDRVFTQRNYLVQHERTHARKSG 40
Score = 37.1 bits (86), Expect = 3e-04
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKP 268
C + +T+ ++L H RTH +
Sbjct: 18 CDRVFTQRNYLVQHERTHARKSG 40
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 43.9 bits (103), Expect = 2e-06
Identities = 13/77 (16%), Positives = 21/77 (27%), Gaps = 17/77 (22%)
Query: 231 GSRKKLTSHACFHPG--------CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFAR 282
GS H G CG + + S T + K C+ C +
Sbjct: 1 GSSGSSGKRQKIHLGDRSQKCSKCGIIFIRRS-------TLSRRKTPMCE--KCRKDSCQ 51
Query: 283 SDELTRHFRKHTGDRPF 299
L + +G +
Sbjct: 52 EAALNKDEGNESGKKTS 68
Score = 43.1 bits (101), Expect = 4e-06
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 9/51 (17%)
Query: 252 KSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
S + H G++ +C CG F R L+R + C+
Sbjct: 2 SSGSSGKRQKIHLGDRSQKC--SKCGIIFIRRSTLSRR-------KTPMCE 43
Score = 36.9 bits (85), Expect = 8e-04
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 228 RRSGSRKKLTSHACFHPGCGKTYTKSSHLKAHLRTHTGEKPY 269
R + + + C C K + + L +G+K
Sbjct: 29 IRRSTLSRRKTPMC--EKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 27.3 bits (60), Expect = 2.2
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 281 ARSDELTRHFRKHTGDRPFQCK 302
S + + H GDR +C
Sbjct: 1 GSSGSSGKRQKIHLGDRSQKCS 22
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 45.3 bits (106), Expect = 3e-06
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 244 PGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKH 293
P C ++ S LK H+R E C C +F +D H K
Sbjct: 78 PLCLMPFSSSVSLKQHIRYT--EHTKVCPV--CKKEFTSTDSALDHVCKK 123
Score = 34.5 bits (78), Expect = 0.016
Identities = 17/103 (16%), Positives = 25/103 (24%), Gaps = 36/103 (34%)
Query: 229 RSGSRKKLTSHACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKG------------- 275
SGS+K + H G T + H T ++ + K
Sbjct: 7 DSGSKK----YLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSY 62
Query: 276 -----------------CGWKFARSDELTRHFRKHTGDRPFQC 301
C F+ S L +H R C
Sbjct: 63 LYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE--HTKVC 103
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 42.5 bits (100), Expect = 4e-06
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 241 CFHPGCGKTYTKSSHLKAHLRTHTGEK 267
C PGC KT+ + ++++H++TH ++
Sbjct: 21 CLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 40.2 bits (94), Expect = 3e-05
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 259 HLRTHTGEKP---YQCKWKGCGWKFARSDELTRHFRKHTGDR 297
+ + E P ++C + GC F R + H + H DR
Sbjct: 6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 41.1 bits (97), Expect = 8e-06
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEK 267
C C + + + HLK H R+HT EK
Sbjct: 3 FVC--EVCTRAFARQEHLKRHYRSHTNEK 29
Score = 40.8 bits (96), Expect = 1e-05
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHTGDR 297
+ + C+ C FAR + L RH+R HT ++
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHTNEK 29
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 38.0 bits (87), Expect = 2e-04
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 263 HTGEKPYQCKWKGCGWKFARSDELTRHFRKHTG 295
+GEKPY C CG +F R D ++ H R H G
Sbjct: 5 SSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDG 35
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 36.2 bits (83), Expect = 0.001
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 7/56 (12%)
Query: 245 GCGKTYTKSSHLKAHL-RTHTGEK------PYQCKWKGCGWKFARSDELTRHFRKH 293
C ++ + L+ HL + H + P C W+ C + + + H
Sbjct: 8 ECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ 63
Score = 30.8 bits (69), Expect = 0.080
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 269 YQCKWKGCGWKFARSDELTRH-FRKHTGDRPFQCKPNLV 306
+CKWK C + +L RH + H L
Sbjct: 2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLA 40
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 35.1 bits (80), Expect = 0.001
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEK 267
CGK +T++S L AH+R HTGEK
Sbjct: 8 CGKAFTQASSLIAHVRQHTGEK 29
Score = 27.8 bits (61), Expect = 0.45
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHTGDR 297
KP QC CG F ++ L H R+HTG++
Sbjct: 1 KPCQCVM--CGKAFTQASSLIAHVRQHTGEK 29
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 0.001
Identities = 46/267 (17%), Positives = 84/267 (31%), Gaps = 99/267 (37%)
Query: 2 WQEFES---------FLLGPPAPCQ-VSPVSICNPTL----------GPTVMLS----SS 37
W+ F F +G C P + P++ P+ MLS +
Sbjct: 289 WESFFVSVRKAITVLFFIG--VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 38 SQIVKEEY------GFPTAKYVEEPQLNQNEEFV------DLDMLINY--------AAEQ 77
Q+ ++Y P K VE +N + V L L +Q
Sbjct: 347 EQV--QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ 404
Query: 78 HS--FSNMK------------------------KLEDDNFYVCSNVMFDSQNQL----YP 107
FS K + D V +NV F+++ + Y
Sbjct: 405 SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD--LVKNNVSFNAK-DIQIPVYD 461
Query: 108 SENNNNL-----NVDES-CVQI--SPLAYNALMTFVPNNENIINDMSPPASP-----TNR 154
+ + ++L ++ E I P+ + F +I+ D P + T+R
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT--HIL-DFGPGGASGLGVLTHR 518
Query: 155 I-NGSFTKMIIADEVVCKEATENYQNK 180
+G+ ++I+A + + Y K
Sbjct: 519 NKDGTGVRVIVAGTLDINPDDD-YGFK 544
Score = 34.3 bits (78), Expect = 0.088
Identities = 38/237 (16%), Positives = 60/237 (25%), Gaps = 100/237 (42%)
Query: 172 EATENYQNKVITPPM------------SPML--TDPLLLNRTEVPP-VNNNNNN--NNTR 214
E Y N + P + SPML ++ L + +V VN N++ +
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN---LTQEQVQDYVNKTNSHLPAGKQ 365
Query: 215 VNI---NTPS--------------KTKTRERRSGS-----------RKKLTSH------A 240
V I N R+ ++ S RK S+ +
Sbjct: 366 VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS 425
Query: 241 CFHPGCGKTYTKSSHLK-AHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPF 299
FH S L A + + + T D
Sbjct: 426 PFH---------SHLLVPASDLINKDLVKNNVSFNAKDIQIP---------VYDTFD--- 464
Query: 300 QCKPNLVNPSIKEGKDLAATAKCPSAD-----TSQPFKTWATVVSTYNFTRSTCHLI 351
G DL + S P K W T ++T H++
Sbjct: 465 -------------GSDLRVLSGSISERIVDCIIRLPVK-WETTTQ----FKAT-HIL 502
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 35.0 bits (80), Expect = 0.001
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHT 294
+KP+ C GCG +F D L H KH
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
Score = 27.3 bits (60), Expect = 0.85
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 240 ACFHPGCGKTYTKSSHLKAHLRTHT 264
C PGCG+ +T HL H H
Sbjct: 8 LCTAPGCGQRFTNEDHLAVHKHKHE 32
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 34.4 bits (79), Expect = 0.002
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRK-HTGD 296
K Y C C F R D L RH +K H+G+
Sbjct: 1 KAYACGL--CNRAFTRRDLLIRHAQKIHSGN 29
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.004
Identities = 27/200 (13%), Positives = 58/200 (29%), Gaps = 45/200 (22%)
Query: 59 NQNEEFVDLDMLINYAAEQHSFSNMKKLEDDNF---YVCSNVMFDSQNQLYPSENNNNLN 115
+ + +D + Q+ + ++ + +D F + C +V D + E
Sbjct: 1 HHHHHHMDFET----GEHQYQYKDILSVFEDAFVDNFDCKDVQ-DMPKSILSKEE----- 50
Query: 116 VDESCVQISPL--AYNALMTFVPNNENIINDMSPPASPTNRINGSFTKMIIADEVVCKEA 173
+D + + T + E ++ F + ++
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK--------------FVEEVLRI------- 89
Query: 174 TENYQNKVITPPMSPMLTDPLLLNRTEVPPVNNNNNNNNTRVNINTPSKTKTRERRSGSR 233
NY K + P+ P ++ R + + N+N N + R
Sbjct: 90 --NY--KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL- 144
Query: 234 KKLTSHA--CFH--PGCGKT 249
+L G GKT
Sbjct: 145 LELRPAKNVLIDGVLGSGKT 164
Score = 38.3 bits (88), Expect = 0.005
Identities = 29/231 (12%), Positives = 75/231 (32%), Gaps = 52/231 (22%)
Query: 37 SSQIVKEEYGFPTAK--------YVEEPQLNQNEEFVDLDMLINY---AAEQHSFSNMKK 85
S + + A + Q ++FV+ + INY + +
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 86 LEDDNFYVCSNVMFDSQNQLYPSENNNNLNV--DESCVQISPLAYNALMTFVPNNENIIN 143
+ + + +++ NQ++ NV + +++ AL+ P +I+
Sbjct: 107 MMTRMYIEQRDRLYND-NQVFAK-----YNVSRLQPYLKLR----QALLELRPAKNVLID 156
Query: 144 DMSPPASPTNRINGSFTKMIIADEVVCKEATE-NYQNKV--IT-----PPMSPMLTDPLL 195
+ K +A +V + K+ + P + + L
Sbjct: 157 GV-----------LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 196 LNRTEVPPVNNNNNNNNTRVNINTPSKTKTRERRSGSRKKLTSHACFHPGC 246
L + + + +++++N ++ I++ + RR K + C
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHS---IQAELRRLLKSKP-------YENC 246
Score = 29.1 bits (64), Expect = 2.8
Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 32/130 (24%)
Query: 57 QLNQNEEFVDLDML-INYAAEQHSFSNMKKLEDDNFYVCSNVMFDSQNQL--YPSENNNN 113
+ E M+ +++ F K D + S + ++ QL Y +N
Sbjct: 483 NIEHPERMTLFRMVFLDF-----RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 114 LNVDESCVQISPLAYNALMTFVPNNENIINDMSPPASPTNRINGSFTKMI-IA----DEV 168
E V NA++ F+P E N I +T ++ IA DE
Sbjct: 538 DPKYERLV-------NAILDFLPKIE------------ENLICSKYTDLLRIALMAEDEA 578
Query: 169 VCKEATENYQ 178
+ +EA + Q
Sbjct: 579 IFEEAHKQVQ 588
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 31.4 bits (71), Expect = 0.022
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 244 PGCGKTYTKSSHLKAHLRTHTGEK 267
P C K + +S HL H+ H +K
Sbjct: 6 PECPKRFMRSDHLTLHILLHENKK 29
Score = 31.0 bits (70), Expect = 0.039
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 276 CGWKFARSDELTRHFRKHTGDR 297
C +F RSD LT H H +
Sbjct: 8 CPKRFMRSDHLTLHILLHENKK 29
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 31.7 bits (71), Expect = 0.022
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 264 TGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDR 297
+ KPY+C C + A L H RKHTG++
Sbjct: 5 SSGKPYKCPQ--CSYASAIKANLNVHLRKHTGEK 36
Score = 25.9 bits (56), Expect = 2.5
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 230 SGSRKKLTSHACFHPGCGKTYTKSSHLKAHLRTHTGEK 267
SGS K + C P C ++L HLR HTGEK
Sbjct: 3 SGSSGK--PYKC--PQCSYASAIKANLNVHLRKHTGEK 36
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 31.3 bits (70), Expect = 0.025
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEK 267
+ C H C + + L+ H+R HTGEK
Sbjct: 4 YVCIH--CQRQFADPGALQRHVRIHTGEK 30
Score = 30.5 bits (68), Expect = 0.063
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHTGDR 297
KPY C C +FA L RH R HTG++
Sbjct: 2 KPYVCIH--CQRQFADPGALQRHVRIHTGEK 30
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 31.4 bits (71), Expect = 0.027
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 276 CGWKFARSDELTRHFRKHTGDRP 298
C +F RSD L++H H
Sbjct: 8 CPKRFMRSDHLSKHITLHELLGE 30
Score = 31.4 bits (71), Expect = 0.027
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 244 PGCGKTYTKSSHLKAHLRTHTGEKP 268
P C K + +S HL H+ H
Sbjct: 6 PECPKRFMRSDHLSKHITLHELLGE 30
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 30.5 bits (68), Expect = 0.045
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHTG 295
+PY C CG +F+ ++ H+R HTG
Sbjct: 2 RPYSCS--VCGKRFSLKHQMETHYRVHTG 28
Score = 26.7 bits (58), Expect = 1.4
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTG 265
++C CGK ++ ++ H R HTG
Sbjct: 4 YSC--SVCGKRFSLKHQMETHYRVHTG 28
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 30.6 bits (68), Expect = 0.059
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 232 SRKKLTSHACFHPGCGKTYTKSSHLKAHLRTHTGEK 267
S C + C K + L+AHLR HT EK
Sbjct: 3 SGSSGKIFTCEY--CNKVFKFKHSLQAHLRIHTNEK 36
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.100
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 30/58 (51%)
Query: 76 EQHSFSNMKKLEDDNFYVCSNVMFDSQNQLYPSENNNNLNVDESCVQISP-LAYNALM 132
E+ + +KKL+ + +LY D+S +P LA A M
Sbjct: 18 EKQA---LKKLQ-------------ASLKLY---------ADDS----APALAIKATM 46
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 29.3 bits (65), Expect = 0.15
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 263 HTGEKPYQCKWKGCGWKFARSDELTRHFRKHT 294
+G++P+ C+ C F RH + HT
Sbjct: 2 SSGKRPFVCRI--CLSAFTTKANCARHLKVHT 31
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 30.5 bits (68), Expect = 0.29
Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 9/82 (10%)
Query: 226 RERRSGSRKKLTSHACFHPGCGKTYTKSSHLKAHLRT-HTG---EKPYQCKWKGCGWKFA 281
++K + C C + H+ + H Y C C +
Sbjct: 6 HHHNQQNKKVEGGYEC--KYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCV--ECNFLTK 61
Query: 282 RSDELTRHFRK-HTGDRPFQCK 302
R D L+ H K H G+ F+
Sbjct: 62 RYDALSEHNLKYHPGEENFKLT 83
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 29.0 bits (64), Expect = 0.30
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 262 THTGEKPYQCKWKGCGWKFARSDELTRHFRKHT 294
+ EK ++C C F+ S LT+H R HT
Sbjct: 6 SGQKEKCFKCN--KCEKTFSCSKYLTQHERIHT 36
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 31.7 bits (71), Expect = 0.45
Identities = 18/123 (14%), Positives = 29/123 (23%), Gaps = 3/123 (2%)
Query: 171 KEATENYQNKVITPPMSPMLTDPLLLNRTEVPPVNNNNNNNNTRVNINTPSKTKTRERRS 230
K T + + ++ N N S++ +
Sbjct: 84 KGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEG 143
Query: 231 GSRKKLTSHACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHF 290
GS +K S +K T + YQC C +L H
Sbjct: 144 GSNQKPMSTRI-AEATSAIVSKHPARVGLPPTASSGHGYQCHV--CSAVLFSPLDLDAHV 200
Query: 291 RKH 293
H
Sbjct: 201 ASH 203
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 27.4 bits (60), Expect = 0.63
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKH 293
KPY C+ CG +F +S +L H R H
Sbjct: 1 KPYVCE--RCGKRFVQSSQLANHIRHH 25
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 27.9 bits (61), Expect = 0.70
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 230 SGSRKKLTSHACFHPGCGKTYTKSSHLKAHLRTHTGEK 267
SGSR+K SH C CG+ + + L H H G+K
Sbjct: 6 SGSREK--SHQCRE--CGEIFFQYVSLIEHQVLHMGQK 39
Score = 27.1 bits (59), Expect = 1.2
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 264 TGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDR 297
+ EK +QC+ CG F + L H H G +
Sbjct: 8 SREKSHQCR--ECGEIFFQYVSLIEHQVLHMGQK 39
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding
protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB:
2ab7_A
Length = 29
Score = 26.9 bits (59), Expect = 0.89
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 269 YQCKWKGCGWKFARSDELTRHFRKHTG 295
Y C ++ CG F +L RH + HTG
Sbjct: 3 YVCHFENCGRSFNDRRKLNRHKKIHTG 29
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 27.0 bits (59), Expect = 1.1
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 244 PGCGKTYTKSSHLKAHLRT 262
P C K + +S L H++T
Sbjct: 6 PACPKRFMRSDALSKHIKT 24
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger,
ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo
sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A
1ldk_A 1ldk_B 3rtr_A
Length = 760
Score = 29.8 bits (66), Expect = 1.7
Identities = 13/58 (22%), Positives = 25/58 (43%)
Query: 179 NKVITPPMSPMLTDPLLLNRTEVPPVNNNNNNNNTRVNINTPSKTKTRERRSGSRKKL 236
+K++ D + L + + N RVNIN P KT+ ++ + + K +
Sbjct: 630 SKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNI 687
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A
{Homo sapiens} PDB: 2an6_A 1k2f_A
Length = 193
Score = 29.0 bits (64), Expect = 2.1
Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 9/53 (16%)
Query: 245 GCGKT---YTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARS-DELTRHFRKH 293
GC T K+ H + +PY C G K+ S D + H
Sbjct: 15 GCEITLPHTEKADHEELCEF-----RPYSCPCPGASCKWQGSLDAVMPHLMHQ 62
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 28.7 bits (65), Expect = 3.1
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 62 EEFVDLDMLINYAAEQHSFSNMKKLEDDNF 91
E LD+L A +Q + +K L + F
Sbjct: 124 EALGGLDILALVAGKQTAIPEIKDLTSEQF 153
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 28.3 bits (64), Expect = 3.7
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 62 EEFVDLDMLINYAAEQHSFSNMKKLEDDNF 91
+ L++L+N A+Q+ ++ + +
Sbjct: 121 RQLGSLNILVNNVAQQYPQQGLEYITAEQL 150
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Length = 608
Score = 28.5 bits (64), Expect = 4.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 244 PGCGKTYTKSSHLKAHLRTHTGEKP 268
PG GKT T + L A ++ GE+
Sbjct: 173 PGTGKTTTVAKLLAALIQMADGERC 197
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type
zinc finger, KIAA0530, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 73
Score = 26.5 bits (57), Expect = 4.1
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 263 HTGEKPYQCKWKGCGWKFARSDELTRHFRK-HTGDRPFQC 301
++ +PY+C +GC F L H++ H D P
Sbjct: 22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFS 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 26.5 bits (58), Expect = 4.9
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELT 287
CG TY + + ++ +K C GC R +L
Sbjct: 26 CGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLI 67
>2xcm_E RAR1, cytosolic heat shock protein 90; chaperone-protein binding
complex, stress response; HET: ADP; 2.20A {Arabidopsis
thaliana}
Length = 74
Score = 26.1 bits (57), Expect = 5.7
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 241 CFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKWKG 275
C + GCG+T+ + + + H G + + +G
Sbjct: 12 CKNKGCGQTFKERDNHETACSHHPGPAVFHDRLRG 46
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 26.6 bits (58), Expect = 8.9
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 7/82 (8%)
Query: 238 SHACFHPGCGKTYTKSS-------HLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHF 290
S +PG G + ++ + K H KP + W K + D
Sbjct: 11 SGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIHAEAV 70
Query: 291 RKHTGDRPFQCKPNLVNPSIKE 312
+K ++V +++
Sbjct: 71 KKRRRTTKKPYSRSIVGATLEV 92
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.129 0.392
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,328,019
Number of extensions: 292936
Number of successful extensions: 1376
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1138
Number of HSP's successfully gapped: 442
Length of query: 371
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 276
Effective length of database: 4,049,298
Effective search space: 1117606248
Effective search space used: 1117606248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 58 (26.6 bits)