RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16849
(371 letters)
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 65.9 bits (161), Expect = 5e-15
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 238 SHACFHPGCGKTYTKSSHLKAHLRTHTGEKPYQCKW 273
S +C P CGK++ HLK H++ H+ + Y C++
Sbjct: 1 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 36
Score = 55.1 bits (133), Expect = 4e-11
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 269 YQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
+ C CG F L H + H+ R + C+
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 60.2 bits (146), Expect = 6e-13
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTG 295
+ Y+C CG F+ S +L++H R HTG
Sbjct: 3 SEWQQRERRRYKCDE--CGKSFSHSSDLSKHRRTHTG 37
Score = 36.7 bits (85), Expect = 1e-04
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 246 CGKTYTKSSHLKAHLRTHTGE 266
CGK+++ SS L H RTHTGE
Sbjct: 18 CGKSFSHSSDLSKHRRTHTGE 38
Score = 31.7 bits (72), Expect = 0.009
Identities = 3/15 (20%), Positives = 6/15 (40%)
Query: 288 RHFRKHTGDRPFQCK 302
R + R ++C
Sbjct: 2 RSEWQQRERRRYKCD 16
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 59.9 bits (145), Expect = 9e-13
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 254 SHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTGDR 297
+ +++ +K ++C + GC F R + H + H DR
Sbjct: 5 GSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 41.5 bits (97), Expect = 3e-06
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEK 267
C PGC KT+ + ++++H++TH ++
Sbjct: 19 FECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 25.7 bits (56), Expect = 1.5
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 288 RHFRKHTGDRPFQC 301
+ K D+ F+C
Sbjct: 8 DKYVKEMPDKTFEC 21
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 57.0 bits (138), Expect = 1e-11
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 259 HLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTG 295
R TG KP+QC C F+RSD L H ++H
Sbjct: 2 STRGSTGIKPFQCPD--CDRSFSRSDHLALHRKRHML 36
Score = 32.0 bits (73), Expect = 0.005
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 246 CGKTYTKSSHLKAHLRTHTG 265
C +++++S HL H + H
Sbjct: 17 CDRSFSRSDHLALHRKRHML 36
Score = 29.7 bits (67), Expect = 0.046
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 289 HFRKHTGDRPFQCK 302
R TG +PFQC
Sbjct: 2 STRGSTGIKPFQCP 15
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 55.0 bits (133), Expect = 4e-11
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTG 295
++PY C GC F R+ +L RH + H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 48.5 bits (116), Expect = 8e-09
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGE 266
++C HPGC K + ++ L H ++H +
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 55.0 bits (133), Expect = 5e-11
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 261 RTHTGEKPYQCKWKGCGWKFARSDELTRHF-RKHTGD 296
RTH+GEKPY+C C +F +S + H +KHT +
Sbjct: 1 RTHSGEKPYECYI--CHARFTQSGTMKMHILQKHTEN 35
Score = 34.6 bits (80), Expect = 8e-04
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 246 CGKTYTKSSHLKAH-LRTHTGE 266
C +T+S +K H L+ HT
Sbjct: 14 CHARFTQSGTMKMHILQKHTEN 35
Score = 26.5 bits (59), Expect = 0.58
Identities = 5/12 (41%), Positives = 10/12 (83%)
Query: 291 RKHTGDRPFQCK 302
R H+G++P++C
Sbjct: 1 RTHSGEKPYECY 12
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 54.7 bits (132), Expect = 6e-11
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 261 RTHTGEKPYQCKWKGCGWKFARSDELTRHFRKHTG 295
RTHTGEKPY C C F + L HF+++
Sbjct: 1 RTHTGEKPYACSH--CDKTFRQKQLLDMHFKRYHD 33
Score = 37.3 bits (87), Expect = 7e-05
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEK 267
C KT+ + L H + +
Sbjct: 14 CDKTFRQKQLLDMHFKRYHDPN 35
Score = 25.4 bits (56), Expect = 1.3
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 291 RKHTGDRPFQCK 302
R HTG++P+ C
Sbjct: 1 RTHTGEKPYACS 12
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 54.2 bits (131), Expect = 7e-11
Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 263 HTGEKPYQCKWKGCGWKFARSDELTRHFRKHTG 295
H+GEKPY C CG F+RS L +H R HTG
Sbjct: 2 HSGEKPYGCVE--CGKAFSRSSILVQHQRVHTG 32
Score = 43.0 bits (102), Expect = 8e-07
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 246 CGKTYTKSSHLKAHLRTHTGE 266
CGK +++SS L H R HTGE
Sbjct: 13 CGKAFSRSSILVQHQRVHTGE 33
Score = 24.5 bits (54), Expect = 2.3
Identities = 4/10 (40%), Positives = 8/10 (80%)
Query: 293 HTGDRPFQCK 302
H+G++P+ C
Sbjct: 2 HSGEKPYGCV 11
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 53.5 bits (129), Expect = 1e-10
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHT 294
+PY C + GC KFA+S L H H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
Score = 52.0 bits (125), Expect = 5e-10
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHT 264
+ C GC K + +S++LK+H+ TH
Sbjct: 3 YVCPFDGCNKKFAQSTNLKSHILTHA 28
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 53.5 bits (129), Expect = 1e-10
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGEK 267
C CGK +T+S L+ H RTHTGEK
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 51.9 bits (125), Expect = 5e-10
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHTGDR 297
+P+ C W CG +F RSDEL RH R HTG++
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 53.1 bits (128), Expect = 2e-10
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHTG 295
+PY C + C +F+RS +LTRH R HTG
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29
Score = 50.4 bits (121), Expect = 2e-09
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTG 265
+AC C + +++S+ L H+R HTG
Sbjct: 3 YACPVESCDRRFSRSADLTRHIRIHTG 29
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 52.7 bits (127), Expect = 2e-10
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGE 266
H C GC K+Y++ +LK HLR+HTGE
Sbjct: 3 HKCTFEGCRKSYSRLENLKTHLRSHTGE 30
Score = 51.2 bits (123), Expect = 8e-10
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHTGD 296
KP++C ++GC ++R + L H R HTG+
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 52.3 bits (126), Expect = 4e-10
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 264 TGEKPYQCKWKGCGWKFARSDELTRHFRK-HTGDRPFQCK 302
+ KPY C+ CG F+R D L H ++ HT +RP +C+
Sbjct: 1 SVGKPYICQS--CGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
Score = 51.1 bits (123), Expect = 1e-09
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 246 CGKTYTKSSHLKAHLR-THTGEKPYQCK 272
CGK +++ HL H++ HT E+P++C+
Sbjct: 11 CGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 50.1 bits (119), Expect = 4e-09
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPYQCKWKGCGWKFARSDELTRHFRKH 293
CGK++T S H+ H G +PY C CG KF L H + H
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIH 53
Score = 37.4 bits (86), Expect = 1e-04
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGDRPFQCK 302
+K Y C+ CG F + RH H G RP+ C
Sbjct: 1 DKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCG 34
Score = 33.9 bits (77), Expect = 0.002
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 233 RKKLTSHACFHPGCGKTYTKSSHLKAHLRTH 263
L CGK + HL H++ H
Sbjct: 23 SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 49.3 bits (118), Expect = 4e-09
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGE 266
C GCGK ++ +L+ H+R HTG+
Sbjct: 3 FQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
Score = 48.9 bits (117), Expect = 5e-09
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHTGD 296
KP+QC ++GCG +F+ L H R HTGD
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 47.8 bits (114), Expect = 1e-08
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 263 HTGEKPYQCKWKGCGWKFARSDELTRHFRKHTG 295
+G++P+ + C F RH + HT
Sbjct: 2 SSGKRPF--VCRICLSAFTTKANCARHLKVHTD 32
Score = 35.1 bits (81), Expect = 4e-04
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 241 CFHPGCGKTYTKSSHLKAHLRTHTGE 266
C +T ++ HL+ HT
Sbjct: 8 FVCRICLSAFTTKANCARHLKVHTDT 33
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 46.1 bits (110), Expect = 5e-08
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEK 267
C + + + HLK H R+HT EK
Sbjct: 8 CTRAFARQEHLKRHYRSHTNEK 29
Score = 44.5 bits (106), Expect = 2e-07
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHTGDR 297
+ + C+ C FAR + L RH+R HT ++
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHTNEK 29
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 45.0 bits (107), Expect = 1e-07
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHTGDR 297
K + C C +F RSD L++H + H +
Sbjct: 1 KKFACPE--CPKRFMRSDHLSKHIKTHQNKK 29
Score = 44.3 bits (105), Expect = 2e-07
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEK 267
C K + +S HL H++TH +K
Sbjct: 8 CPKRFMRSDHLSKHIKTHQNKK 29
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 45.3 bits (108), Expect = 1e-07
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTG 295
+KP+QC+ C F+RSD LT H R HTG
Sbjct: 1 QKPFQCRI--CMRNFSRSDHLTTHIRTHTG 28
Score = 40.3 bits (95), Expect = 6e-06
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 246 CGKTYTKSSHLKAHLRTHTG 265
C + +++S HL H+RTHTG
Sbjct: 9 CMRNFSRSDHLTTHIRTHTG 28
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 40.6 bits (95), Expect = 5e-06
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKH 293
EKP+ C CG KFARSDE RH + H
Sbjct: 1 EKPFACDI--CGRKFARSDERKRHTKIH 26
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 36.8 bits (85), Expect = 1e-04
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHT 294
+KP+ C GCG +F D L H KH
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
Score = 27.1 bits (60), Expect = 0.32
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 240 ACFHPGCGKTYTKSSHLKAHLRTHT 264
C PGCG+ +T HL H H
Sbjct: 8 LCTAPGCGQRFTNEDHLAVHKHKHE 32
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 35.6 bits (83), Expect = 2e-04
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHT 294
KPY+C CG F+++ L H R HT
Sbjct: 1 KPYKCLE--CGKAFSQNSGLINHQRIHT 26
Score = 35.6 bits (83), Expect = 2e-04
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 246 CGKTYTKSSHLKAHLRTHT 264
CGK ++++S L H R HT
Sbjct: 8 CGKAFSQNSGLINHQRIHT 26
>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 31
Score = 35.3 bits (81), Expect = 4e-04
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 236 LTSHACFHPGCGKTYTKSSHLKAHLRTHTGE 266
+ + C CG Y K+ L+AHL HTGE
Sbjct: 1 MKRYICSFADCGAAYNKNWKLQAHLSKHTGE 31
Score = 27.6 bits (61), Expect = 0.20
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHTGD 296
K Y C + CG + ++ +L H KHTG+
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE 31
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 33.9 bits (77), Expect = 0.001
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 246 CGKTYTKSSHLKAHLRTHTGEKPY 269
CGK + HL H +H+GEKPY
Sbjct: 11 CGKIFRDVYHLNRHKLSHSGEKPY 34
Score = 26.2 bits (57), Expect = 0.86
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 276 CGWKFARSDELTRHFRKHTGDRPF 299
CG F L RH H+G++P+
Sbjct: 11 CGKIFRDVYHLNRHKLSHSGEKPY 34
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 33.4 bits (76), Expect = 0.002
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTGE 266
H C CGK + +SS LK H HTGE
Sbjct: 3 HVCAE--CGKAFVESSKLKRHQLVHTGE 28
Score = 27.7 bits (61), Expect = 0.17
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 276 CGWKFARSDELTRHFRKHTGD 296
CG F S +L RH HTG+
Sbjct: 8 CGKAFVESSKLKRHQLVHTGE 28
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 29
Score = 32.9 bits (75), Expect = 0.002
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTG 265
+ C PGC K YT S L+ H++T G
Sbjct: 3 YVCKLPGCTKRYTDPSSLRKHVKTVHG 29
Score = 30.2 bits (68), Expect = 0.026
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHTG 295
KPY CK GC ++ L +H + G
Sbjct: 1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG 29
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 33.1 bits (75), Expect = 0.003
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTG 295
EKPY C CG +F R D ++ H R H G
Sbjct: 1 EKPYSCPV--CGLRFKRKDRMSYHVRSHDG 28
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 32.3 bits (73), Expect = 0.005
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKHTGD 296
E+P++C+ C + S +LT H R HTGD
Sbjct: 1 ERPFKCQI--CPYASRNSSQLTVHLRSHTGD 29
Score = 24.6 bits (53), Expect = 2.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 246 CGKTYTKSSHLKAHLRTHTGE 266
C SS L HLR+HTG+
Sbjct: 9 CPYASRNSSQLTVHLRSHTGD 29
>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 30
Score = 31.6 bits (71), Expect = 0.008
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHTGD 296
KP+ CK +GC F LTRH HTG+
Sbjct: 1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 30
Score = 29.3 bits (65), Expect = 0.055
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 241 CFHPGCGKTYTKSSHLKAHLRTHTGE 266
C GC K +T HL H THTGE
Sbjct: 5 CKEEGCEKGFTSLHHLTRHSLTHTGE 30
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 33
Score = 31.2 bits (71), Expect = 0.012
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 239 HACFHPGC---GKTYTKSSHLKAHLRTHTGE 266
C GC + + L H+R HTGE
Sbjct: 3 FVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 33
Score = 30.8 bits (70), Expect = 0.016
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 267 KPYQCKWKGC---GWKFARSDELTRHFRKHTGD 296
K + C W GC F L H R+HTG+
Sbjct: 1 KEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 33
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 30.9 bits (70), Expect = 0.014
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 268 PYQCKWKGCGWKFARSDELTRHFRK-HTGD 296
PY C C F R D L RH +K H+G+
Sbjct: 1 PYPCGL--CNRAFTRRDLLIRHAQKIHSGN 28
>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 29.9 bits (67), Expect = 0.029
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 240 ACFHPGCGKTYTKSSHLKAHLRTH 263
AC H GC K + +S ++ HL TH
Sbjct: 3 ACPHKGCTKMFRDNSAMRKHLHTH 26
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 29.8 bits (67), Expect = 0.034
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 244 PGCGKTYTKSSHLKAHLRTHTGEK 267
CG K S LK H+RTHT +
Sbjct: 5 EECGIRAKKPSMLKKHIRTHTDVR 28
Score = 24.4 bits (53), Expect = 2.7
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 269 YQCKWKGCGWKFARSDELTRHFRKHTGDR 297
Y C+ CG + + L +H R HT R
Sbjct: 2 YICEE--CGIRAKKPSMLKKHIRTHTDVR 28
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 29.3 bits (65), Expect = 0.051
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 244 PGCGKTYTKSSHLKAHLRTHTGEK 267
P C K + +LK H R HTGEK
Sbjct: 4 PTCHKKFLSKYYLKVHNRKHTGEK 27
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 29.3 bits (65), Expect = 0.053
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHTG 265
H C CGK +++ LK H+R HTG
Sbjct: 2 HKC--EVCGKCFSRKDKLKTHMRCHTG 26
Score = 28.9 bits (64), Expect = 0.076
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 268 PYQCKWKGCGWKFARSDELTRHFRKHTG 295
P++C+ CG F+R D+L H R HTG
Sbjct: 1 PHKCEV--CGKCFSRKDKLKTHMRCHTG 26
>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 28
Score = 28.5 bits (63), Expect = 0.11
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 239 HACFHPGCGKTYTKSSHLKAHLRTHT 264
+ C CGK + K + LK H +HT
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHT 27
Score = 24.3 bits (52), Expect = 3.4
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 269 YQCKWKGCGWKFARSDELTRHFRKHT 294
Y C ++ CG F + ++L H HT
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHT 27
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 29
Score = 28.1 bits (62), Expect = 0.13
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 241 CFHPGCGKTYTKSSHLKAHLRTH 263
C H GC K ++ S LK H + H
Sbjct: 6 CPHEGCDKRFSLPSRLKRHEKVH 28
Score = 28.1 bits (62), Expect = 0.14
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 266 EKPYQCKWKGCGWKFARSDELTRHFRKH 293
+ PY+C +GC +F+ L RH + H
Sbjct: 1 QLPYECPHEGCDKRFSLPSRLKRHEKVH 28
>d2glia1 g.37.1.1 (A:103-134) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 32
Score = 27.9 bits (62), Expect = 0.18
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 271 CKWKGCGWKFARSDELTRH 289
C+W GC +F ++L H
Sbjct: 4 CRWDGCSQEFDSQEQLVHH 22
>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 31
Score = 27.2 bits (60), Expect = 0.34
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 241 CFHPGCGKTYTKSS-HLKAHLRTHTGE 266
C H GC K ++ +S K RTH+ E
Sbjct: 5 CEHEGCSKAFSNASDRAKHQNRTHSNE 31
Score = 24.1 bits (52), Expect = 3.6
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 267 KPYQCKWKGCGWKFARSDELTRH 289
KPY C+ +GC F+ + + +H
Sbjct: 1 KPYMCEHEGCSKAFSNASDRAKH 23
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 24.7 bits (53), Expect = 1.9
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 267 KPYQCKWKGCGWKFARSDELTRHFRKHT 294
KPY+CK C + A S L +H R H+
Sbjct: 2 KPYKCKT--CDYAAADSSSLNKHLRIHS 27
>d3bfxa1 c.37.1.5 (A:12-296) Sulfotransferase Sult1c2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 285
Score = 25.9 bits (56), Expect = 8.2
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 68 DMLINYAAEQHSFSNMKKLEDDNFYVCSNVMFDSQN 103
+ +++ ++ SF MK+ N S + D
Sbjct: 207 ETVLDKIVQETSFEKMKENPMTNRSTVSKSILDQSI 242
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.129 0.392
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,332,168
Number of extensions: 60405
Number of successful extensions: 265
Number of sequences better than 10.0: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 84
Length of query: 371
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 284
Effective length of database: 1,213,086
Effective search space: 344516424
Effective search space used: 344516424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 54 (25.1 bits)