Query psy16850
Match_columns 174
No_of_seqs 167 out of 1267
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 23:40:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16850.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16850hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0156 BioF 7-keto-8-aminopel 100.0 4.1E-40 8.9E-45 291.0 12.6 151 9-164 1-166 (388)
2 KOG1360|consensus 100.0 5E-34 1.1E-38 250.9 10.3 163 7-169 125-305 (570)
3 PLN02955 8-amino-7-oxononanoat 100.0 3.4E-33 7.4E-38 252.3 13.0 143 15-165 73-248 (476)
4 KOG1357|consensus 100.0 1.3E-31 2.7E-36 237.8 11.6 159 10-168 86-268 (519)
5 PLN02483 serine palmitoyltrans 100.0 2.5E-29 5.3E-34 227.7 16.6 153 9-163 49-227 (489)
6 PRK13393 5-aminolevulinate syn 100.0 2.2E-27 4.9E-32 208.4 17.5 155 9-164 1-174 (406)
7 TIGR01821 5aminolev_synth 5-am 100.0 3.1E-27 6.8E-32 206.8 17.8 156 9-164 1-174 (402)
8 KOG1359|consensus 100.0 7.2E-29 1.6E-33 211.9 6.8 145 18-170 36-196 (417)
9 PRK09064 5-aminolevulinate syn 99.9 7.9E-27 1.7E-31 204.3 17.6 156 9-164 1-175 (407)
10 PLN03227 serine palmitoyltrans 99.9 3.3E-25 7.1E-30 195.4 12.1 109 55-165 1-126 (392)
11 PRK13392 5-aminolevulinate syn 99.9 5.9E-24 1.3E-28 186.8 16.8 155 9-164 2-175 (410)
12 KOG1358|consensus 99.9 9.2E-26 2E-30 197.9 5.2 122 43-164 85-221 (467)
13 TIGR01822 2am3keto_CoA 2-amino 99.9 7.5E-23 1.6E-27 177.5 16.7 145 12-163 2-164 (393)
14 PRK05937 8-amino-7-oxononanoat 99.9 1.4E-23 3E-28 182.6 9.9 113 52-164 4-138 (370)
15 PLN02822 serine palmitoyltrans 99.9 2.9E-23 6.3E-28 187.8 11.2 122 44-165 101-237 (481)
16 PRK07179 hypothetical protein; 99.8 3.1E-20 6.7E-25 163.1 15.8 146 9-164 19-181 (407)
17 PRK05958 8-amino-7-oxononanoat 99.7 2.4E-16 5.2E-21 135.4 17.1 148 9-163 1-165 (385)
18 cd06454 KBL_like KBL_like; thi 99.7 6.2E-16 1.4E-20 131.2 12.3 110 52-163 1-127 (349)
19 PRK06939 2-amino-3-ketobutyrat 99.7 3.2E-15 6.9E-20 129.2 16.8 146 11-163 5-168 (397)
20 PRK07505 hypothetical protein; 99.6 3.3E-15 7.2E-20 131.2 12.6 114 48-163 42-179 (402)
21 PRK13034 serine hydroxymethylt 99.6 3.2E-15 7E-20 132.9 10.5 106 53-165 30-169 (416)
22 TIGR01825 gly_Cac_T_rel pyrido 99.6 4.3E-14 9.3E-19 122.2 15.8 141 17-164 3-160 (385)
23 TIGR00858 bioF 8-amino-7-oxono 99.6 6.1E-14 1.3E-18 119.1 14.2 119 43-163 7-142 (360)
24 TIGR03576 pyridox_MJ0158 pyrid 99.5 4.6E-14 1E-18 123.0 8.0 66 59-134 26-93 (346)
25 TIGR01885 Orn_aminotrans ornit 99.4 2.7E-12 5.9E-17 112.7 10.4 111 48-164 33-184 (401)
26 TIGR03246 arg_catab_astC succi 99.3 8.4E-12 1.8E-16 110.0 11.0 107 48-161 31-177 (397)
27 PRK00854 rocD ornithine--oxo-a 99.3 2E-11 4.3E-16 106.9 11.8 130 23-162 16-186 (401)
28 TIGR02539 SepCysS Sep-tRNA:Cys 99.3 4.9E-11 1.1E-15 103.9 11.6 97 64-162 13-138 (370)
29 PLN03226 serine hydroxymethylt 99.2 3.5E-11 7.5E-16 109.4 9.9 106 58-168 41-187 (475)
30 PRK05093 argD bifunctional N-s 99.2 2.2E-10 4.8E-15 100.9 10.6 109 48-162 36-183 (403)
31 cd00610 OAT_like Acetyl ornith 99.1 2.6E-10 5.7E-15 99.4 10.0 109 49-163 33-188 (413)
32 TIGR00707 argD acetylornithine 99.1 3.8E-10 8.1E-15 97.5 10.5 78 49-132 24-104 (379)
33 PRK12381 bifunctional succinyl 99.0 1.8E-09 3.8E-14 95.6 10.7 107 48-161 35-181 (406)
34 PRK02936 argD acetylornithine 99.0 2.6E-09 5.6E-14 92.7 11.4 109 48-162 25-166 (377)
35 PRK01278 argD acetylornithine 99.0 3.2E-09 6.9E-14 92.8 9.9 78 48-132 27-108 (389)
36 PTZ00125 ornithine aminotransf 99.0 1.9E-09 4E-14 94.2 8.2 78 49-132 28-108 (400)
37 PF00155 Aminotran_1_2: Aminot 98.8 1E-08 2.2E-13 87.8 7.2 112 53-166 2-145 (363)
38 PRK03244 argD acetylornithine 98.8 4.6E-08 9.9E-13 85.6 11.2 108 48-161 39-181 (398)
39 PLN02624 ornithine-delta-amino 98.8 1.6E-07 3.5E-12 85.2 14.2 77 48-130 71-150 (474)
40 PRK04073 rocD ornithine--oxo-a 98.7 1.7E-07 3.7E-12 82.4 11.7 80 48-132 36-117 (396)
41 PRK12403 putative aminotransfe 98.6 3.5E-07 7.7E-12 82.8 9.3 82 48-133 50-136 (460)
42 PRK02627 acetylornithine amino 98.5 7.7E-07 1.7E-11 77.4 10.8 80 48-133 35-117 (396)
43 PRK04260 acetylornithine amino 98.5 5E-07 1.1E-11 78.7 9.5 76 48-132 25-104 (375)
44 PRK09331 Sep-tRNA:Cys-tRNA syn 98.5 8.2E-07 1.8E-11 78.0 10.7 91 71-163 32-151 (387)
45 PRK03715 argD acetylornithine 98.5 2.3E-07 4.9E-12 82.3 6.8 76 48-133 32-114 (395)
46 PRK08117 4-aminobutyrate amino 98.5 5.4E-07 1.2E-11 80.5 8.9 79 48-131 39-122 (433)
47 cd00378 SHMT Serine-glycine hy 98.5 7.7E-07 1.7E-11 77.7 9.6 110 52-168 20-165 (402)
48 PRK00062 glutamate-1-semialdeh 98.5 2.6E-06 5.7E-11 76.0 13.0 107 49-163 47-194 (426)
49 PLN02760 4-aminobutyrate:pyruv 98.4 7.4E-07 1.6E-11 81.8 8.5 81 48-132 85-171 (504)
50 cd06452 SepCysS Sep-tRNA:Cys-t 98.4 3.7E-06 8E-11 72.7 11.1 94 67-162 9-131 (361)
51 cd06502 TA_like Low-specificit 98.3 4.1E-06 8.8E-11 70.9 9.6 95 56-162 1-119 (338)
52 PRK00011 glyA serine hydroxyme 98.3 4.1E-06 9E-11 73.7 9.6 104 56-166 30-167 (416)
53 TIGR00474 selA seryl-tRNA(sec) 98.2 6.5E-06 1.4E-10 74.8 8.4 98 63-162 88-210 (454)
54 cd00614 CGS_like CGS_like: Cys 98.2 1.7E-05 3.7E-10 69.4 10.5 73 88-162 31-124 (369)
55 PTZ00094 serine hydroxymethylt 98.1 1.3E-05 2.8E-10 72.2 8.8 102 57-165 40-183 (452)
56 PF01212 Beta_elim_lyase: Beta 97.9 7.9E-05 1.7E-09 64.0 9.2 91 67-165 7-120 (290)
57 TIGR03812 tyr_de_CO2_Arch tyro 97.9 0.00013 2.8E-09 62.7 10.6 106 50-164 21-154 (373)
58 PLN02721 threonine aldolase 97.9 0.00011 2.4E-09 62.5 9.6 100 53-163 6-130 (353)
59 PRK06082 4-aminobutyrate amino 97.9 5.6E-05 1.2E-09 68.6 8.1 80 48-132 68-150 (459)
60 PRK06149 hypothetical protein; 97.9 5E-05 1.1E-09 74.7 8.3 76 48-130 581-659 (972)
61 COG2008 GLY1 Threonine aldolas 97.8 7.7E-05 1.7E-09 65.6 7.0 71 55-134 2-72 (342)
62 PRK06209 glutamate-1-semialdeh 97.7 0.00037 8E-09 62.6 10.9 108 48-163 44-184 (431)
63 PRK07810 O-succinylhomoserine 97.7 0.00023 5E-09 63.5 8.7 66 97-164 70-156 (403)
64 TIGR00508 bioA adenosylmethion 97.6 6.7E-05 1.5E-09 67.3 5.1 115 48-163 41-204 (427)
65 PRK04311 selenocysteine syntha 97.6 0.00056 1.2E-08 62.5 9.9 81 52-134 79-164 (464)
66 PRK08133 O-succinylhomoserine 97.5 0.00075 1.6E-08 59.8 10.2 71 87-162 54-145 (390)
67 PRK07812 O-acetylhomoserine am 97.5 0.00053 1.1E-08 62.0 9.3 39 96-134 68-106 (436)
68 TIGR01324 cysta_beta_ly_B cyst 97.5 0.00038 8.3E-09 61.6 8.3 65 96-162 49-134 (377)
69 PLN02242 methionine gamma-lyas 97.5 0.00048 1E-08 61.8 8.4 70 91-162 68-161 (418)
70 PRK10534 L-threonine aldolase; 97.5 0.00039 8.5E-09 59.2 7.4 71 54-134 1-71 (333)
71 TIGR01326 OAH_OAS_sulfhy OAH/O 97.5 0.00062 1.3E-08 60.8 8.8 73 86-163 49-142 (418)
72 PRK08114 cystathionine beta-ly 97.5 0.00062 1.3E-08 61.0 8.6 65 96-162 61-146 (395)
73 PRK06234 methionine gamma-lyas 97.4 0.001 2.2E-08 59.2 9.0 66 96-163 63-149 (400)
74 PLN02482 glutamate-1-semialdeh 97.4 0.0021 4.6E-08 58.8 11.2 108 48-163 95-243 (474)
75 PRK02731 histidinol-phosphate 97.4 0.0027 5.7E-08 54.8 11.1 99 50-161 30-152 (367)
76 TIGR01328 met_gam_lyase methio 97.3 0.0012 2.5E-08 58.6 8.9 63 97-161 59-142 (391)
77 PRK05939 hypothetical protein; 97.3 0.001 2.2E-08 59.3 8.5 65 96-162 46-130 (397)
78 PRK08574 cystathionine gamma-s 97.3 0.00089 1.9E-08 59.3 7.8 64 96-162 52-135 (385)
79 PRK08249 cystathionine gamma-s 97.3 0.001 2.3E-08 59.2 8.1 65 96-162 63-148 (398)
80 PRK08153 histidinol-phosphate 97.3 0.0017 3.7E-08 56.6 9.1 103 50-164 29-152 (369)
81 TIGR00713 hemL glutamate-1-sem 97.2 0.0049 1.1E-07 54.6 11.8 108 48-163 44-192 (423)
82 PRK13520 L-tyrosine decarboxyl 97.2 0.0025 5.4E-08 54.6 9.6 95 67-164 32-152 (371)
83 PRK06084 O-acetylhomoserine am 97.2 0.0022 4.9E-08 57.6 9.4 73 86-163 50-143 (425)
84 PRK05968 hypothetical protein; 97.2 0.002 4.3E-08 57.1 8.7 63 96-160 62-145 (389)
85 PRK05964 adenosylmethionine--8 97.2 0.0038 8.3E-08 55.6 10.4 111 48-163 38-196 (423)
86 PRK07504 O-succinylhomoserine 97.1 0.0043 9.3E-08 55.2 10.3 65 96-162 64-149 (398)
87 PLN00144 acetylornithine trans 97.1 0.0039 8.5E-08 55.0 9.6 78 48-131 11-91 (382)
88 PRK06767 methionine gamma-lyas 97.1 0.0027 5.8E-08 56.1 8.6 43 97-141 61-103 (386)
89 PRK06105 aminotransferase; Pro 97.1 0.0028 6.1E-08 57.5 8.5 81 48-132 44-129 (460)
90 PRK04013 argD acetylornithine/ 97.0 0.0033 7.1E-08 55.6 8.6 108 48-161 20-160 (364)
91 KOG1368|consensus 97.0 0.0014 3E-08 57.3 5.6 59 68-134 35-93 (384)
92 PRK13238 tnaA tryptophanase/L- 97.0 0.014 3E-07 53.2 12.2 78 50-134 34-115 (460)
93 PRK02948 cysteine desulfurase; 97.0 0.0037 8E-08 54.2 8.0 66 68-133 13-81 (381)
94 PRK00950 histidinol-phosphate 96.9 0.012 2.6E-07 50.5 11.0 75 49-134 31-109 (361)
95 PRK05994 O-acetylhomoserine am 96.9 0.0045 9.7E-08 55.7 8.6 64 97-162 63-147 (427)
96 TIGR01325 O_suc_HS_sulf O-succ 96.9 0.0082 1.8E-07 52.9 10.2 65 96-162 53-138 (380)
97 PRK00615 glutamate-1-semialdeh 96.9 0.013 2.7E-07 53.0 11.0 109 48-164 49-199 (433)
98 PRK08593 4-aminobutyrate amino 96.9 0.01 2.2E-07 53.6 10.4 79 48-131 38-122 (445)
99 PF01053 Cys_Met_Meta_PP: Cys/ 96.9 0.0065 1.4E-07 54.3 8.9 68 96-165 54-142 (386)
100 COG0001 HemL Glutamate-1-semia 96.9 0.015 3.2E-07 52.9 11.2 113 46-165 47-199 (432)
101 PRK06460 hypothetical protein; 96.8 0.0058 1.3E-07 53.9 8.4 63 96-160 44-127 (376)
102 PRK07811 cystathionine gamma-s 96.8 0.0054 1.2E-07 54.3 8.2 64 97-162 61-145 (388)
103 PRK06702 O-acetylhomoserine am 96.8 0.0051 1.1E-07 55.7 8.2 69 96-166 60-150 (432)
104 PRK08248 O-acetylhomoserine am 96.8 0.0072 1.6E-07 54.5 8.5 65 96-162 63-148 (431)
105 TIGR01141 hisC histidinol-phos 96.8 0.0069 1.5E-07 51.7 8.0 75 50-134 17-93 (346)
106 PRK08247 cystathionine gamma-s 96.7 0.0088 1.9E-07 52.4 8.4 64 96-162 51-135 (366)
107 PRK12389 glutamate-1-semialdeh 96.7 0.033 7.2E-07 49.9 12.1 110 48-164 49-198 (428)
108 TIGR01437 selA_rel uncharacter 96.7 0.0051 1.1E-07 53.9 6.7 64 61-134 18-82 (363)
109 PRK07050 cystathionine beta-ly 96.6 0.0088 1.9E-07 53.2 8.1 64 97-162 65-149 (394)
110 PRK07049 methionine gamma-lyas 96.6 0.012 2.7E-07 52.9 9.0 66 96-163 82-169 (427)
111 PLN02509 cystathionine beta-ly 96.6 0.0091 2E-07 54.6 8.1 63 97-162 133-216 (464)
112 KOG1401|consensus 96.6 0.016 3.5E-07 52.2 9.2 112 48-165 52-205 (433)
113 cd00616 AHBA_syn 3-amino-5-hyd 96.5 0.026 5.7E-07 47.9 10.0 39 95-133 16-54 (352)
114 PRK03158 histidinol-phosphate 96.5 0.028 6E-07 48.4 10.1 73 52-134 29-103 (359)
115 PF01041 DegT_DnrJ_EryC1: DegT 96.5 0.015 3.2E-07 50.7 8.2 38 96-133 24-61 (363)
116 PRK08134 O-acetylhomoserine am 96.5 0.015 3.3E-07 52.5 8.5 66 97-164 64-150 (433)
117 PRK07671 cystathionine beta-ly 96.4 0.017 3.7E-07 51.0 8.4 64 96-162 49-133 (377)
118 PRK05613 O-acetylhomoserine am 96.4 0.017 3.6E-07 52.4 8.6 66 96-163 68-155 (437)
119 PRK07046 aminotransferase; Val 96.4 0.023 4.9E-07 51.6 9.1 107 48-161 71-215 (453)
120 PRK07480 putative aminotransfe 96.3 0.021 4.5E-07 51.9 8.5 81 48-132 46-131 (456)
121 PRK09028 cystathionine beta-ly 96.3 0.024 5.1E-07 50.8 8.7 64 97-162 61-145 (394)
122 PRK07503 methionine gamma-lyas 96.3 0.024 5.3E-07 50.5 8.7 64 97-162 65-149 (403)
123 TIGR01329 cysta_beta_ly_E cyst 96.3 0.024 5.3E-07 50.0 8.6 63 97-162 47-130 (378)
124 TIGR03588 PseC UDP-4-keto-6-de 96.2 0.049 1.1E-06 47.5 10.2 64 97-162 29-116 (380)
125 cd00617 Tnase_like Tryptophana 96.2 0.033 7.1E-07 50.5 9.4 77 51-134 10-90 (431)
126 COG0160 GabT 4-aminobutyrate a 96.1 0.051 1.1E-06 49.7 9.9 80 48-131 52-136 (447)
127 PRK06148 hypothetical protein; 96.1 0.025 5.4E-07 56.3 8.5 78 48-132 620-700 (1013)
128 PRK06058 4-aminobutyrate amino 96.1 0.033 7.1E-07 50.2 8.5 78 48-130 52-135 (443)
129 PRK06225 aspartate aminotransf 96.0 0.09 1.9E-06 45.7 10.9 78 50-134 26-105 (380)
130 cd06451 AGAT_like Alanine-glyo 96.0 0.054 1.2E-06 46.2 9.0 89 68-162 7-122 (356)
131 PRK11706 TDP-4-oxo-6-deoxy-D-g 96.0 0.065 1.4E-06 46.9 9.6 68 93-162 27-118 (375)
132 PRK13360 omega amino acid--pyr 95.9 0.045 9.8E-07 49.5 8.7 79 48-131 42-125 (442)
133 TIGR01977 am_tr_V_EF2568 cyste 95.9 0.03 6.4E-07 48.2 7.1 68 67-134 12-84 (376)
134 PRK09082 methionine aminotrans 95.9 0.16 3.5E-06 44.3 11.7 105 52-162 30-162 (386)
135 PRK06176 cystathionine gamma-s 95.8 0.042 9.2E-07 48.6 8.1 42 97-141 50-91 (380)
136 PRK08861 cystathionine gamma-s 95.8 0.054 1.2E-06 48.3 8.6 64 97-162 53-137 (388)
137 PRK07481 hypothetical protein; 95.8 0.049 1.1E-06 49.3 8.3 80 48-131 38-123 (449)
138 PLN02271 serine hydroxymethylt 95.7 0.05 1.1E-06 51.2 8.4 98 69-169 162-303 (586)
139 PRK07678 aminotransferase; Val 95.7 0.065 1.4E-06 48.5 8.9 78 48-131 43-124 (451)
140 PRK13237 tyrosine phenol-lyase 95.7 0.043 9.3E-07 50.4 7.6 39 96-134 77-115 (460)
141 PRK07482 hypothetical protein; 95.7 0.058 1.3E-06 49.0 8.4 81 48-132 46-131 (461)
142 cd00615 Orn_deC_like Ornithine 95.6 0.059 1.3E-06 45.5 7.7 67 95-163 57-152 (294)
143 PRK11658 UDP-4-amino-4-deoxy-L 95.6 0.06 1.3E-06 47.3 8.0 55 69-132 14-68 (379)
144 COG4992 ArgD Ornithine/acetylo 95.6 0.05 1.1E-06 49.1 7.4 110 48-162 38-183 (404)
145 PRK09264 diaminobutyrate--2-ox 95.5 0.082 1.8E-06 47.3 8.5 80 48-132 35-123 (425)
146 PRK06916 adenosylmethionine--8 95.4 0.08 1.7E-06 48.1 8.4 79 48-131 52-135 (460)
147 PRK07483 hypothetical protein; 95.4 0.088 1.9E-06 47.6 8.6 79 48-131 26-109 (443)
148 PRK06434 cystathionine gamma-l 95.4 0.035 7.6E-07 49.5 5.9 45 96-142 63-107 (384)
149 PRK05769 4-aminobutyrate amino 95.4 0.093 2E-06 47.4 8.6 79 48-130 50-133 (441)
150 PRK07030 adenosylmethionine--8 95.4 0.085 1.8E-06 48.1 8.4 80 48-132 43-127 (466)
151 PRK06918 4-aminobutyrate amino 95.4 0.098 2.1E-06 47.2 8.7 79 48-131 50-134 (451)
152 COG0399 WecE Predicted pyridox 95.3 0.056 1.2E-06 48.3 7.0 65 97-163 34-122 (374)
153 PRK08776 cystathionine gamma-s 95.3 0.1 2.2E-06 46.6 8.7 66 95-162 58-144 (405)
154 PRK06541 hypothetical protein; 95.3 0.1 2.2E-06 47.4 8.7 79 48-131 48-131 (460)
155 PRK08045 cystathionine gamma-s 95.2 0.12 2.6E-06 45.9 8.7 64 97-162 52-136 (386)
156 PRK05639 4-aminobutyrate amino 95.2 0.12 2.6E-06 47.0 8.8 79 48-131 49-132 (457)
157 PRK12414 putative aminotransfe 95.2 0.34 7.3E-06 42.4 11.4 80 51-134 28-112 (384)
158 PRK07495 4-aminobutyrate amino 95.2 0.12 2.6E-06 46.5 8.7 79 48-131 36-120 (425)
159 PRK06777 4-aminobutyrate amino 95.2 0.11 2.4E-06 46.4 8.4 79 48-131 36-120 (421)
160 PRK07986 adenosylmethionine--8 95.1 0.11 2.4E-06 46.9 8.3 79 48-131 39-122 (428)
161 PRK06173 adenosylmethionine--8 95.1 0.11 2.4E-06 46.8 8.4 79 48-131 40-123 (429)
162 PRK09221 beta alanine--pyruvat 95.1 0.13 2.7E-06 46.6 8.7 79 48-131 45-128 (445)
163 PRK11522 putrescine--2-oxoglut 95.1 0.12 2.6E-06 47.1 8.6 110 48-163 78-225 (459)
164 TIGR02080 O_succ_thio_ly O-suc 95.1 0.13 2.7E-06 45.6 8.4 65 96-162 50-135 (382)
165 PRK06062 hypothetical protein; 95.1 0.13 2.7E-06 46.7 8.5 78 48-131 49-131 (451)
166 cd00609 AAT_like Aspartate ami 95.1 0.13 2.8E-06 42.9 8.1 73 55-134 1-81 (350)
167 PRK08064 cystathionine beta-ly 95.1 0.12 2.7E-06 45.7 8.3 36 96-131 53-88 (390)
168 PRK05764 aspartate aminotransf 95.1 0.37 7.9E-06 41.9 11.1 102 51-162 30-163 (393)
169 cd06453 SufS_like Cysteine des 95.0 0.19 4.2E-06 43.1 9.1 72 62-133 5-82 (373)
170 PRK08361 aspartate aminotransf 95.0 0.28 6E-06 42.9 10.2 102 52-163 33-166 (391)
171 PRK09792 4-aminobutyrate trans 95.0 0.17 3.7E-06 45.2 9.0 80 48-132 36-121 (421)
172 TIGR03372 putres_am_tran putre 94.9 0.16 3.4E-06 46.2 8.5 110 48-163 71-218 (442)
173 PRK05630 adenosylmethionine--8 94.9 0.16 3.4E-06 45.7 8.5 79 48-131 36-119 (422)
174 TIGR02407 ectoine_ectB diamino 94.8 0.15 3.3E-06 45.4 8.4 80 48-132 31-119 (412)
175 PRK05965 hypothetical protein; 94.8 0.14 3.1E-06 46.5 8.2 80 48-131 42-126 (459)
176 PRK15407 lipopolysaccharide bi 94.8 0.11 2.3E-06 47.1 7.3 37 97-133 63-99 (438)
177 PRK05967 cystathionine beta-ly 94.8 0.2 4.4E-06 44.9 8.9 46 95-142 62-107 (395)
178 PRK08360 4-aminobutyrate amino 94.7 0.18 3.8E-06 45.7 8.5 79 48-131 37-120 (443)
179 PF00202 Aminotran_3: Aminotra 94.6 0.12 2.5E-06 45.0 6.9 83 47-133 11-97 (339)
180 PRK08297 L-lysine aminotransfe 94.6 0.31 6.7E-06 44.1 9.7 108 17-132 13-130 (443)
181 PRK06917 hypothetical protein; 94.5 0.23 4.9E-06 45.0 8.7 80 48-132 27-111 (447)
182 cd00613 GDC-P Glycine cleavage 94.4 0.24 5.3E-06 42.9 8.5 78 53-134 21-104 (398)
183 TIGR00709 dat 2,4-diaminobutyr 94.4 0.23 5E-06 44.8 8.5 79 48-131 35-121 (442)
184 TIGR02618 tyr_phenol_ly tyrosi 94.3 0.18 3.8E-06 46.2 7.5 38 96-134 70-108 (450)
185 PRK06108 aspartate aminotransf 94.3 0.83 1.8E-05 39.3 11.4 78 53-134 25-106 (382)
186 PRK08742 adenosylmethionine--8 94.3 0.21 4.6E-06 45.6 8.1 80 48-132 60-149 (472)
187 PRK07036 hypothetical protein; 94.3 0.24 5.1E-06 45.2 8.3 80 48-131 47-131 (466)
188 TIGR01976 am_tr_V_VC1184 cyste 94.3 0.44 9.6E-06 41.3 9.8 66 67-132 29-97 (397)
189 PRK04870 histidinol-phosphate 94.3 0.9 2E-05 39.0 11.5 108 51-168 25-157 (356)
190 COG0112 GlyA Glycine/serine hy 94.2 0.36 7.8E-06 43.6 8.9 104 58-168 33-170 (413)
191 KOG1402|consensus 94.1 0.2 4.4E-06 44.6 7.2 109 48-162 55-205 (427)
192 PRK06943 adenosylmethionine--8 94.1 0.23 5E-06 45.1 7.9 80 48-132 50-134 (453)
193 TIGR00700 GABAtrnsam 4-aminobu 94.1 0.32 6.8E-06 43.4 8.6 79 48-131 29-113 (420)
194 TIGR01814 kynureninase kynuren 94.1 0.066 1.4E-06 47.2 4.2 78 52-133 26-107 (406)
195 PRK04612 argD acetylornithine 94.0 0.31 6.6E-06 43.6 8.3 78 48-131 36-117 (408)
196 PRK08088 4-aminobutyrate amino 93.9 0.39 8.5E-06 42.8 8.9 81 48-133 37-123 (425)
197 PRK06931 diaminobutyrate--2-ox 93.8 0.35 7.6E-06 44.0 8.4 80 48-131 54-140 (459)
198 PRK07582 cystathionine gamma-l 93.7 0.14 3E-06 44.9 5.6 38 96-134 50-87 (366)
199 PRK03321 putative aminotransfe 93.6 1 2.2E-05 38.6 10.6 72 53-134 23-96 (352)
200 TIGR03251 LAT_fam L-lysine 6-t 93.6 0.56 1.2E-05 42.2 9.3 109 16-132 5-123 (431)
201 COG0626 MetC Cystathionine bet 93.5 0.46 1E-05 42.9 8.6 45 96-142 62-106 (396)
202 PRK07269 cystathionine gamma-s 93.5 0.17 3.8E-06 44.5 5.8 43 97-142 54-96 (364)
203 PRK06938 diaminobutyrate--2-ox 93.3 0.44 9.5E-06 43.4 8.3 79 48-131 59-146 (464)
204 TIGR00699 GABAtrns_euk 4-amino 93.0 0.72 1.6E-05 42.3 9.2 78 48-132 54-142 (464)
205 cd01494 AAT_I Aspartate aminot 92.8 0.22 4.8E-06 36.9 4.7 36 99-134 2-39 (170)
206 PRK05957 aspartate aminotransf 92.8 2 4.2E-05 37.6 11.3 79 53-134 28-111 (389)
207 PLN02656 tyrosine transaminase 92.3 1.9 4E-05 38.1 10.6 79 50-134 29-118 (409)
208 PRK07683 aminotransferase A; V 92.3 2 4.4E-05 37.5 10.8 75 52-134 28-111 (387)
209 PRK08354 putative aminotransfe 91.8 2.5 5.3E-05 35.8 10.4 92 52-162 8-117 (311)
210 PRK08068 transaminase; Reviewe 91.8 2.6 5.7E-05 36.7 10.8 77 51-134 31-116 (389)
211 PRK06207 aspartate aminotransf 91.7 4.8 0.0001 35.5 12.5 81 52-134 39-124 (405)
212 TIGR02379 ECA_wecE TDP-4-keto- 91.6 0.68 1.5E-05 40.8 7.1 56 69-132 11-66 (376)
213 TIGR01140 L_thr_O3P_dcar L-thr 91.5 1.7 3.6E-05 37.2 9.1 59 99-162 49-125 (330)
214 TIGR03235 DNA_S_dndA cysteine 91.5 1.2 2.5E-05 38.2 8.2 64 68-133 11-80 (353)
215 PF00464 SHMT: Serine hydroxym 91.2 0.77 1.7E-05 41.5 7.0 105 58-169 27-174 (399)
216 PRK07550 hypothetical protein; 91.2 6 0.00013 34.4 12.4 104 51-163 28-163 (386)
217 PLN00145 tyrosine/nicotianamin 90.8 3.3 7.1E-05 37.1 10.6 78 51-134 51-139 (430)
218 COG2873 MET17 O-acetylhomoseri 90.6 1.3 2.9E-05 40.0 7.8 85 76-165 41-149 (426)
219 PRK06348 aspartate aminotransf 90.3 4.1 8.9E-05 35.5 10.7 78 53-140 30-115 (384)
220 PRK07682 hypothetical protein; 90.3 3.7 8.1E-05 35.5 10.3 74 53-134 21-103 (378)
221 TIGR03301 PhnW-AepZ 2-aminoeth 90.2 1.8 4E-05 36.5 8.2 39 96-134 30-72 (355)
222 TIGR01264 tyr_amTase_E tyrosin 90.1 1.1 2.4E-05 39.2 7.0 78 51-134 30-117 (401)
223 PRK07309 aromatic amino acid a 89.8 5 0.00011 35.0 10.9 102 52-163 30-163 (391)
224 PRK01533 histidinol-phosphate 89.7 7.9 0.00017 33.7 11.9 75 50-134 27-103 (366)
225 PRK06107 aspartate aminotransf 89.2 3 6.4E-05 36.6 9.0 80 51-134 32-115 (402)
226 PLN03026 histidinol-phosphate 88.9 5.5 0.00012 34.8 10.4 73 51-134 51-125 (380)
227 PRK07681 aspartate aminotransf 88.8 9.4 0.0002 33.4 11.8 77 50-134 30-115 (399)
228 PRK08960 hypothetical protein; 88.7 6 0.00013 34.4 10.4 76 51-134 31-114 (387)
229 TIGR02617 tnaA_trp_ase tryptop 88.5 0.72 1.6E-05 42.5 4.6 42 93-134 70-111 (467)
230 PRK08363 alanine aminotransfer 87.9 3.3 7.1E-05 36.2 8.3 78 50-134 28-115 (398)
231 PRK07324 transaminase; Validat 87.9 3.3 7.2E-05 36.1 8.3 75 51-134 25-102 (373)
232 PRK06836 aspartate aminotransf 87.9 7.7 0.00017 33.9 10.7 78 52-134 33-118 (394)
233 PRK14807 histidinol-phosphate 87.3 11 0.00023 32.4 11.0 73 54-134 24-98 (351)
234 PRK07777 aminotransferase; Val 86.8 12 0.00026 32.5 11.2 74 53-134 25-107 (387)
235 cd00611 PSAT_like Phosphoserin 86.8 2.4 5.1E-05 36.8 6.7 66 68-134 11-85 (355)
236 PLN00143 tyrosine/nicotianamin 86.6 8.8 0.00019 33.9 10.4 79 50-134 30-119 (409)
237 PLN02409 serine--glyoxylate am 86.1 7.9 0.00017 34.1 9.8 62 69-134 18-82 (401)
238 PRK06290 aspartate aminotransf 85.7 17 0.00038 32.2 11.8 77 50-134 42-128 (410)
239 PRK13355 bifunctional HTH-doma 85.7 11 0.00023 34.6 10.7 81 50-140 144-234 (517)
240 TIGR03540 DapC_direct LL-diami 85.5 18 0.00039 31.2 11.6 77 51-134 28-113 (383)
241 PLN02672 methionine S-methyltr 85.2 13 0.00028 37.9 11.7 77 50-134 695-776 (1082)
242 TIGR03539 DapC_actino succinyl 85.2 8.6 0.00019 33.1 9.4 74 51-130 20-97 (357)
243 PRK05942 aspartate aminotransf 84.9 18 0.00038 31.6 11.3 77 51-134 34-119 (394)
244 TIGR01265 tyr_nico_aTase tyros 84.7 4.5 9.8E-05 35.5 7.6 78 51-134 30-118 (403)
245 PRK14012 cysteine desulfurase; 84.4 5.7 0.00012 34.8 8.0 64 68-133 16-87 (404)
246 PRK05166 histidinol-phosphate 84.1 16 0.00035 31.5 10.7 101 51-163 35-159 (371)
247 TIGR02006 IscS cysteine desulf 84.0 5.2 0.00011 35.1 7.7 65 68-133 16-85 (402)
248 KOG0053|consensus 83.6 2.3 5.1E-05 38.6 5.3 68 96-165 76-161 (409)
249 TIGR03392 FeS_syn_CsdA cystein 83.4 12 0.00027 32.5 9.7 69 63-132 25-98 (398)
250 PRK09265 aminotransferase AlaT 83.1 19 0.00042 31.5 10.9 77 50-134 31-117 (404)
251 PRK07865 N-succinyldiaminopime 83.0 9 0.00019 33.0 8.6 76 51-132 26-105 (364)
252 cd06450 DOPA_deC_like DOPA dec 82.7 9.3 0.0002 32.2 8.5 39 95-133 32-78 (345)
253 TIGR01364 serC_1 phosphoserine 82.5 6.6 0.00014 34.3 7.6 64 70-134 6-78 (349)
254 PLN02187 rooty/superroot1 82.5 24 0.00052 32.0 11.4 78 51-134 65-153 (462)
255 PRK02610 histidinol-phosphate 82.3 24 0.00053 30.5 11.1 101 53-162 29-163 (374)
256 PRK13479 2-aminoethylphosphona 81.5 6.7 0.00014 33.6 7.2 38 97-134 37-78 (368)
257 PRK05387 histidinol-phosphate 81.4 8.1 0.00018 32.9 7.6 75 51-134 23-99 (353)
258 PLN00175 aminotransferase fami 80.8 36 0.00078 30.1 11.8 75 52-134 54-137 (413)
259 TIGR03402 FeS_nifS cysteine de 80.8 4.8 0.0001 34.7 6.1 64 68-132 12-79 (379)
260 PRK08912 hypothetical protein; 80.6 37 0.00081 29.4 11.8 74 53-134 27-109 (387)
261 PLN02414 glycine dehydrogenase 80.6 6 0.00013 39.8 7.3 72 91-164 562-664 (993)
262 PLN02974 adenosylmethionine-8- 80.6 8 0.00017 38.1 8.1 79 49-131 358-446 (817)
263 PRK03967 histidinol-phosphate 80.3 14 0.0003 31.6 8.8 72 50-129 16-88 (337)
264 PF06838 Met_gamma_lyase: Meth 79.9 9.7 0.00021 34.5 7.7 48 93-142 49-100 (403)
265 TIGR03531 selenium_SpcS O-phos 79.2 2.8 6.1E-05 38.3 4.3 38 96-133 104-145 (444)
266 COG1103 Archaea-specific pyrid 78.5 8.2 0.00018 33.9 6.7 65 69-134 27-98 (382)
267 PRK07590 L,L-diaminopimelate a 78.3 16 0.00034 32.2 8.6 86 51-141 33-125 (409)
268 COG0436 Aspartate/tyrosine/aro 78.3 42 0.0009 29.9 11.4 104 53-162 29-162 (393)
269 PLN02651 cysteine desulfurase 77.5 11 0.00023 32.6 7.2 65 68-132 12-80 (364)
270 PRK08175 aminotransferase; Val 77.3 25 0.00053 30.7 9.6 103 52-163 29-161 (395)
271 PLN02452 phosphoserine transam 77.0 14 0.0003 32.7 7.9 66 68-134 19-93 (365)
272 PRK13580 serine hydroxymethylt 76.9 14 0.0003 34.5 8.1 74 56-134 54-133 (493)
273 PF00266 Aminotran_5: Aminotra 76.4 10 0.00022 32.6 6.9 65 68-132 12-81 (371)
274 PRK03317 histidinol-phosphate 76.0 49 0.0011 28.4 11.0 105 53-165 27-161 (368)
275 PRK07568 aspartate aminotransf 75.4 15 0.00032 31.8 7.6 74 52-134 30-110 (397)
276 PTZ00433 tyrosine aminotransfe 75.2 16 0.00034 32.2 7.8 78 50-134 31-126 (412)
277 PRK09105 putative aminotransfe 74.5 21 0.00044 31.2 8.3 73 52-134 43-117 (370)
278 PRK05355 3-phosphoserine/phosp 74.0 12 0.00027 32.7 6.8 66 68-134 15-89 (360)
279 PRK09148 aminotransferase; Val 72.8 20 0.00044 31.5 7.9 78 50-134 28-114 (405)
280 COG1104 NifS Cysteine sulfinat 72.6 5.4 0.00012 36.0 4.2 63 68-131 14-80 (386)
281 PRK15399 lysine decarboxylase 71.1 50 0.0011 32.3 10.6 40 95-134 193-233 (713)
282 PRK07908 hypothetical protein; 70.4 17 0.00038 31.0 6.8 72 51-131 21-93 (349)
283 PRK12566 glycine dehydrogenase 70.4 5.8 0.00012 39.8 4.2 73 92-164 538-639 (954)
284 PRK15481 transcriptional regul 70.0 27 0.00059 30.9 8.1 99 53-162 86-210 (431)
285 TIGR01979 sufS cysteine desulf 68.8 10 0.00022 33.0 5.0 65 68-132 31-100 (403)
286 PLN02855 Bifunctional selenocy 68.3 19 0.0004 31.8 6.7 61 68-128 45-109 (424)
287 PRK14809 histidinol-phosphate 68.0 48 0.001 28.3 9.0 75 50-134 28-104 (357)
288 PRK07366 succinyldiaminopimela 67.5 34 0.00074 29.6 8.1 78 50-134 28-114 (388)
289 TIGR02326 transamin_PhnW 2-ami 67.1 14 0.0003 31.6 5.5 60 70-134 13-76 (363)
290 PRK09147 succinyldiaminopimela 67.0 86 0.0019 27.2 12.2 76 50-134 27-112 (396)
291 PRK05664 threonine-phosphate d 66.8 29 0.00062 29.6 7.4 61 52-130 20-81 (330)
292 PRK14808 histidinol-phosphate 66.3 30 0.00065 29.6 7.4 75 50-132 17-96 (335)
293 PRK15400 lysine decarboxylase 66.1 36 0.00077 33.2 8.5 40 95-134 193-233 (714)
294 PRK09276 LL-diaminopimelate am 65.3 65 0.0014 27.8 9.4 77 51-134 30-115 (385)
295 KOG0256|consensus 64.8 37 0.0008 31.3 7.8 106 63-170 78-227 (471)
296 PRK08056 threonine-phosphate d 64.7 35 0.00075 29.3 7.5 74 49-132 17-92 (356)
297 TIGR01788 Glu-decarb-GAD gluta 64.5 15 0.00033 33.3 5.4 61 68-131 54-120 (431)
298 PRK07337 aminotransferase; Val 63.5 41 0.00089 29.1 7.8 75 52-134 30-112 (388)
299 KOG1403|consensus 63.3 5.8 0.00013 35.3 2.4 76 51-131 46-121 (452)
300 TIGR03542 DAPAT_plant LL-diami 63.2 36 0.00077 29.8 7.4 81 51-134 32-116 (402)
301 PRK05839 hypothetical protein; 61.8 47 0.001 28.8 7.9 74 51-129 23-99 (374)
302 PLN03032 serine decarboxylase; 61.0 25 0.00054 31.3 6.1 64 68-131 36-104 (374)
303 PRK04366 glycine dehydrogenase 60.9 20 0.00043 32.7 5.6 67 61-127 71-144 (481)
304 COG0161 BioA Adenosylmethionin 60.2 34 0.00074 31.6 6.9 80 49-133 41-126 (449)
305 PRK00451 glycine dehydrogenase 59.7 77 0.0017 28.1 9.0 41 92-132 107-149 (447)
306 PRK09295 bifunctional cysteine 58.0 24 0.00052 30.8 5.4 64 68-131 36-104 (406)
307 PRK10874 cysteine sulfinate de 57.5 23 0.00051 30.8 5.2 70 62-132 27-101 (401)
308 PF01276 OKR_DC_1: Orn/Lys/Arg 55.7 36 0.00077 31.1 6.2 43 92-134 61-104 (417)
309 COG0520 csdA Selenocysteine ly 54.8 69 0.0015 28.8 7.9 64 68-131 35-102 (405)
310 TIGR03538 DapC_gpp succinyldia 54.3 71 0.0015 27.7 7.7 76 50-134 26-112 (393)
311 PF11015 DUF2853: Protein of u 51.2 22 0.00047 26.3 3.3 44 62-114 57-101 (102)
312 PLN02607 1-aminocyclopropane-1 51.0 1.2E+02 0.0027 27.3 9.0 15 151-165 182-196 (447)
313 PF13693 HTH_35: Winged helix- 50.0 4.8 0.0001 28.3 -0.3 44 80-125 23-66 (78)
314 KOG0257|consensus 49.5 1.3E+02 0.0029 27.5 8.7 99 71-173 49-182 (420)
315 TIGR03403 nifS_epsilon cystein 49.3 52 0.0011 28.3 6.1 63 68-132 12-80 (382)
316 PF03841 SelA: L-seryl-tRNA se 48.0 6 0.00013 35.5 0.0 67 63-134 13-84 (367)
317 KOG4492|consensus 47.8 13 0.00029 32.4 2.0 57 60-116 91-153 (368)
318 TIGR03537 DapC succinyldiamino 47.2 1.8E+02 0.0039 24.7 12.0 72 54-134 2-82 (350)
319 cd06277 PBP1_LacI_like_1 Ligan 46.1 1.5E+02 0.0032 23.5 8.0 63 71-134 136-198 (268)
320 PRK06358 threonine-phosphate d 45.3 1E+02 0.0022 26.4 7.3 71 52-132 19-91 (354)
321 PRK13578 ornithine decarboxyla 44.8 61 0.0013 31.7 6.2 40 95-134 172-212 (720)
322 PTZ00377 alanine aminotransfer 44.6 2.4E+02 0.0052 25.5 11.9 89 69-163 91-212 (481)
323 TIGR00461 gcvP glycine dehydro 42.5 49 0.0011 33.3 5.3 103 61-163 488-625 (939)
324 PLN00415 3-ketoacyl-CoA syntha 41.7 59 0.0013 30.1 5.4 62 63-134 377-442 (466)
325 PLN02376 1-aminocyclopropane-1 41.0 82 0.0018 28.9 6.3 36 99-134 96-141 (496)
326 PRK15029 arginine decarboxylas 40.3 73 0.0016 31.3 6.0 39 96-134 204-243 (755)
327 PLN02724 Molybdenum cofactor s 39.8 3.5E+02 0.0075 26.6 10.6 63 96-161 77-143 (805)
328 cd08173 Gro1PDH Sn-glycerol-1- 39.5 1E+02 0.0022 26.7 6.3 77 90-169 4-80 (339)
329 PRK14476 nitrogenase molybdenu 39.3 1.1E+02 0.0025 27.8 6.9 106 65-170 74-201 (455)
330 PRK06855 aminotransferase; Val 38.0 2.2E+02 0.0047 25.3 8.4 66 62-133 44-116 (433)
331 cd06281 PBP1_LacI_like_5 Ligan 37.6 2.1E+02 0.0045 22.7 8.4 61 71-134 134-197 (269)
332 PF04371 PAD_porph: Porphyromo 36.9 41 0.00089 29.4 3.5 27 98-124 167-193 (329)
333 COG1982 LdcC Arginine/lysine/o 36.7 1.6E+02 0.0035 28.0 7.5 46 95-142 68-114 (557)
334 COG0075 Serine-pyruvate aminot 35.1 2E+02 0.0044 26.0 7.6 67 97-165 38-131 (383)
335 COG4100 Cystathionine beta-lya 35.0 68 0.0015 28.7 4.5 48 93-142 60-111 (416)
336 PRK14588 tRNA pseudouridine sy 34.8 1.3E+02 0.0029 25.5 6.2 61 97-170 26-89 (272)
337 PF03474 DMA: DMRTA motif; In 34.6 30 0.00064 21.2 1.6 24 146-169 10-33 (39)
338 PRK07392 threonine-phosphate d 33.6 2.2E+02 0.0047 24.3 7.4 71 52-133 22-95 (360)
339 PF00465 Fe-ADH: Iron-containi 32.8 88 0.0019 27.2 4.9 76 90-169 3-80 (366)
340 COG2861 Uncharacterized protei 32.6 1.6E+02 0.0034 25.2 6.1 22 151-172 218-239 (250)
341 PRK02769 histidine decarboxyla 32.5 1.7E+02 0.0037 26.0 6.7 35 96-130 64-102 (380)
342 PF10087 DUF2325: Uncharacteri 31.8 95 0.0021 21.8 4.1 88 68-163 8-96 (97)
343 COG3077 RelB DNA-damage-induci 30.6 1.2E+02 0.0026 21.8 4.4 65 57-134 1-65 (88)
344 PLN02932 3-ketoacyl-CoA syntha 30.3 1.3E+02 0.0028 28.0 5.7 63 62-134 390-456 (478)
345 cd03062 TRX_Fd_Sucrase TRX-lik 29.2 1.9E+02 0.004 20.5 5.3 59 93-166 19-85 (97)
346 PRK08636 aspartate aminotransf 28.5 4E+02 0.0086 23.2 9.1 77 51-134 32-117 (403)
347 PRK10344 DNA-binding transcrip 28.4 27 0.00058 25.4 0.7 28 96-123 43-70 (92)
348 COG1167 ARO8 Transcriptional r 27.8 4.2E+02 0.0092 24.0 8.6 120 52-173 89-235 (459)
349 PRK12462 phosphoserine aminotr 27.7 1.6E+02 0.0035 26.2 5.8 66 68-134 16-90 (364)
350 cd08177 MAR Maleylacetate redu 27.1 2.1E+02 0.0047 24.6 6.3 77 90-169 3-79 (337)
351 cd01966 Nitrogenase_NifN_1 Nit 26.6 2.5E+02 0.0055 25.2 6.8 106 65-170 63-190 (417)
352 PF14226 DIOX_N: non-haem diox 26.4 51 0.0011 23.4 1.9 50 53-112 2-55 (116)
353 PRK05367 glycine dehydrogenase 26.3 75 0.0016 32.1 3.7 43 91-133 536-579 (954)
354 KOG0143|consensus 25.5 1.2E+02 0.0026 26.5 4.4 72 52-128 18-99 (322)
355 cd08170 GlyDH Glycerol dehydro 25.5 2.5E+02 0.0054 24.2 6.5 75 90-169 3-79 (351)
356 PRK03080 phosphoserine aminotr 25.1 1.4E+02 0.003 26.0 4.8 39 96-134 47-89 (378)
357 cd06271 PBP1_AglR_RafR_like Li 25.0 3.4E+02 0.0073 21.2 7.4 62 71-134 138-202 (268)
358 cd08550 GlyDH-like Glycerol_de 24.9 2.4E+02 0.0051 24.5 6.2 74 90-169 3-79 (349)
359 cd06292 PBP1_LacI_like_10 Liga 24.6 3.5E+02 0.0077 21.3 8.0 62 71-134 140-202 (273)
360 KOG1404|consensus 24.6 1.4E+02 0.003 27.5 4.7 77 50-130 48-127 (442)
361 PLN02263 serine decarboxylase 24.2 3.3E+02 0.0071 25.3 7.2 53 80-132 111-172 (470)
362 PRK00074 guaA GMP synthase; Re 24.2 2.3E+02 0.0049 26.3 6.2 82 59-142 160-244 (511)
363 PRK10494 hypothetical protein; 23.4 2E+02 0.0043 24.2 5.3 54 75-129 142-195 (259)
364 PLN02590 probable tyrosine dec 23.0 2E+02 0.0043 27.1 5.6 35 97-131 170-213 (539)
365 PF07364 DUF1485: Protein of u 22.9 1.8E+02 0.0039 25.1 5.0 87 70-161 82-174 (292)
366 KOG3785|consensus 22.8 1.5E+02 0.0033 27.2 4.6 98 68-166 200-314 (557)
367 PF07521 RMMBL: RNA-metabolisi 22.3 71 0.0015 19.3 1.8 20 149-168 16-35 (43)
368 cd08551 Fe-ADH iron-containing 21.9 1.7E+02 0.0036 25.5 4.7 78 90-169 3-82 (370)
369 PRK15454 ethanol dehydrogenase 21.7 1.6E+02 0.0036 26.2 4.7 79 89-169 28-108 (395)
370 PRK12434 tRNA pseudouridine sy 21.4 2.8E+02 0.0061 23.0 5.8 62 96-170 26-90 (245)
371 PLN02994 1-aminocyclopropane-1 21.3 2.7E+02 0.0058 21.5 5.3 49 93-143 92-146 (153)
372 cd06270 PBP1_GalS_like Ligand 21.0 4.2E+02 0.0091 20.9 6.8 63 70-134 133-198 (268)
373 PRK07568 aspartate aminotransf 20.0 5.6E+02 0.012 21.9 8.3 62 61-123 61-123 (397)
No 1
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=100.00 E-value=4.1e-40 Score=291.04 Aligned_cols=151 Identities=32% Similarity=0.514 Sum_probs=139.0
Q ss_pred CChHHHHHHHHHHHHHhCCCCceeeecccccCCCCceeeecCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccc
Q psy16850 9 FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGG 88 (174)
Q Consensus 9 ~~~~~~~~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~ 88 (174)
|++..++.+.|+.++++++||.++.+.+.. ...+..+|++++||||||||||++||++++++++++++||+|++|
T Consensus 1 ~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~-----~~~~~~~~~~~~nf~SNdYLGLa~~~~~~~a~~~~~~~~g~g~~g 75 (388)
T COG0156 1 MDFLSFLRQALQALKAEGLYRGLRALDRRQ-----GLAIRADGRKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGG 75 (388)
T ss_pred CchHHHHHHHHHHHHhhccccchhhccccC-----CcceecCCceeEeeeccCcccccCCHHHHHHHHHHHHHhCCCCCC
Confidence 467788999999999999999998876543 234466789999999999999999999999999999999999999
Q ss_pred cccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhccc--------------CCCCeeE-EEEEEecCCCH
Q psy16850 89 TRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKM--------------IPYFTEL-IYFYRFLANTT 153 (174)
Q Consensus 89 Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~--------------~~g~~~s-~~~~~f~HNd~ 153 (174)
||+++|+.++|.+||++||+|+|+|+||+|+|||.||+|+|++|+++ ++|+++| +++++|+|||+
T Consensus 76 sR~i~G~~~~h~~LE~~lA~f~g~e~al~f~SGy~AN~~~i~~l~~~~dli~~D~lnHASiidG~rls~a~~~~f~HnD~ 155 (388)
T COG0156 76 SRLISGTSDLHVELEEELADFLGAEAALLFSSGFVANLGLLSALLKKGDLIFSDELNHASIIDGIRLSRAEVRRFKHNDL 155 (388)
T ss_pred cCcccCCcHHHHHHHHHHHHHhCCCcEEEEcccchhHHHHHHHhcCCCcEEEEechhhhhHHHHHHhCCCcEEEecCCCH
Confidence 99999999999999999999999999999999999999999999983 6788888 89999999999
Q ss_pred HHHHHHHHHhc
Q psy16850 154 DIIKEASKELQ 164 (174)
Q Consensus 154 ~~Le~~L~~~~ 164 (174)
++||++|++..
T Consensus 156 ~~Le~~l~~~~ 166 (388)
T COG0156 156 DHLEALLEEAR 166 (388)
T ss_pred HHHHHHHHhhh
Confidence 99999999964
No 2
>KOG1360|consensus
Probab=100.00 E-value=5e-34 Score=250.86 Aligned_cols=163 Identities=53% Similarity=0.851 Sum_probs=147.4
Q ss_pred CCCChHHHHHHHHHHHHHhCCCCceeeecccccCCCCceeeecC-CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCC
Q psy16850 7 EPFPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDS-EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTG 85 (174)
Q Consensus 7 ~~~~~~~~~~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~~-g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~g 85 (174)
+.++++.||+++|++.++|..||+|..+.|.++.++-..+..-. .+++--||||||||++.||+|++|+.++|++||.|
T Consensus 125 ~~F~Yd~ff~~~i~kKk~DhsYRvFk~vNRlA~~fP~A~~~se~t~k~VtVWCSNDYLgms~Hp~V~~A~~~tl~~hG~G 204 (570)
T KOG1360|consen 125 PTFDYDRFFREEIDKKKRDHSYRVFKNVNRLAKEFPLAHRYSEATEKKVTVWCSNDYLGMSRHPEVLDAMHDTLDRHGAG 204 (570)
T ss_pred ccccHHHHHHHHHHhhhccchhHHHHHHhHhhhhccchhhccccccCceEEEecCccccccCChHHHHHHHHHHHHcCCC
Confidence 46889999999999999999999999999988887755443211 36789999999999999999999999999999999
Q ss_pred ccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE-----------------EEEEEe
Q psy16850 86 AGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL-----------------IYFYRF 148 (174)
Q Consensus 86 s~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f 148 (174)
+||.|.++|+...|.+||++||+++++|+||+|+|+|.||-+++.+|++++|||... +..+.|
T Consensus 205 AGGTRNIsG~s~~hv~LE~eLA~LHqK~aALlFsSCfVANDstLftLak~lpgcei~SD~gNHASMI~GIrns~v~K~IF 284 (570)
T KOG1360|consen 205 AGGTRNISGHSKHHVRLEAELADLHQKEAALLFSSCFVANDSTLFTLAKKLPGCEIFSDEGNHASMIQGIRNSRVPKHIF 284 (570)
T ss_pred cCCccccCCCCchhhhHHHHHHHHhcCcceeeeeeeeeccchHHHHHHHHCCCcEEeccccchHHHHHHhhhcCCcceee
Confidence 999999999999999999999999999999999999999999999999988888654 356899
Q ss_pred cCCCHHHHHHHHHHhcccccc
Q psy16850 149 LANTTDIIKEASKELQEDMID 169 (174)
Q Consensus 149 ~HNd~~~Le~~L~~~~~~~~~ 169 (174)
||||++|||.+|++..+..+.
T Consensus 285 rHND~~hL~~lL~~~~~svPK 305 (570)
T KOG1360|consen 285 RHNDLDHLEQLLQSSPKSVPK 305 (570)
T ss_pred ccCCHHHHHHHHHhCCCCCCc
Confidence 999999999999998876543
No 3
>PLN02955 8-amino-7-oxononanoate synthase
Probab=100.00 E-value=3.4e-33 Score=252.27 Aligned_cols=143 Identities=22% Similarity=0.347 Sum_probs=119.6
Q ss_pred HHHHHHHHHHhCCCCceeeecccccCCCCceeeecCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccC
Q psy16850 15 FHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISG 94 (174)
Q Consensus 15 ~~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G 94 (174)
+.+++.++..+|..+.- ++...+.. ..++++++||+|||||||++||+|++++.+++++||+|++|||+++|
T Consensus 73 ~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~r~~l~FsSndYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G 144 (476)
T PLN02955 73 FQKWLHDIPSNGEEIFS-------GDALAEER-KGRFKKLLLFSGNDYLGLSSHPTISNAAANAAKEYGMGPKGSALICG 144 (476)
T ss_pred HHHHHHHHhcccccccC-------CCCccccc-cCCCceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccc
Confidence 45677777777765410 11111111 23678999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhc--------------c--------------cCCCCeeE----
Q psy16850 95 NSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLG--------------K--------------MIPYFTEL---- 142 (174)
Q Consensus 95 ~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~--------------~--------------~~~g~~~s---- 142 (174)
++.+|++||++||+|+|.|+||+|+|||+||+++|++|+ + +++|++++
T Consensus 145 ~~~~h~~LE~~LA~f~g~e~all~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~ 224 (476)
T PLN02955 145 YTTYHRLLESSLADLKKKEDCLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQG 224 (476)
T ss_pred ChHHHHHHHHHHHHHHCCCcEEEECChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccC
Confidence 999999999999999999999999999999999999983 1 14566665
Q ss_pred -EEEEEecCCCHHHHHHHHHHhcc
Q psy16850 143 -IYFYRFLANTTDIIKEASKELQE 165 (174)
Q Consensus 143 -~~~~~f~HNd~~~Le~~L~~~~~ 165 (174)
+.+++|+||||++||++|+++..
T Consensus 225 ~a~~~~f~HND~~~Le~~L~~~~~ 248 (476)
T PLN02955 225 NVEVFVYRHCDMYHLNSLLSSCKM 248 (476)
T ss_pred CceEEEeCCCCHHHHHHHHHhCCC
Confidence 67899999999999999988765
No 4
>KOG1357|consensus
Probab=99.97 E-value=1.3e-31 Score=237.76 Aligned_cols=159 Identities=21% Similarity=0.277 Sum_probs=148.3
Q ss_pred ChHHHHHHHHHHHHHhCCCC--------ceeeecccccCCCCceeeecCCeeEEEeccCcccCCCC-CccchHHHHHHHH
Q psy16850 10 PYEDFFHEQIMKKKRDHSYR--------VFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSC-HPKVKSAVREALE 80 (174)
Q Consensus 10 ~~~~~~~~~L~~~~~~g~~r--------~~~~~~~~~~~~~~~~~~~~~g~~~inf~SndYLGL~~-~p~v~~a~~~al~ 80 (174)
+|++||.++|+.+.+|++.| .++.++|.+++++|....+.+--++||++|+|||||++ +..+.+++.++++
T Consensus 86 ~Fe~FY~Rriy~ri~Dc~~RPi~~VPG~~v~l~dR~S~D~n~tfk~tG~~~~~lNlgSYNYLGFa~~~g~ca~~~~~~~~ 165 (519)
T KOG1357|consen 86 SFESFYSRRIYRRIRDCFERPICSVPGAWVDLMDRVSDDYNWTFKYTGTRSRCLNLGSYNYLGFAQSVGPCAEASLKSFD 165 (519)
T ss_pred hHHHHHHHHHHHHHhHhhcCCCcCCCCceEEeeeeeccCCCceEEeccceeeeeeecccccccccccCCcCChHHHHHHH
Confidence 48999999999999999988 58889999999999988888888999999999999997 7888999999999
Q ss_pred HcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhccc--------------CCCCeeE-EEE
Q psy16850 81 KFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKM--------------IPYFTEL-IYF 145 (174)
Q Consensus 81 ~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~--------------~~g~~~s-~~~ 145 (174)
+||.+.|+||...|+..+|.+||+..|+|+|+|+|++|++||.||...||+|.+. +-|+++| |.+
T Consensus 166 kygl~~css~~e~G~~~~hkelE~l~A~f~g~e~a~vF~mGf~TNs~~~p~l~~~gsLIiSDelNHaSi~~GaRLSgAti 245 (519)
T KOG1357|consen 166 KYGLSRCSSRHEAGTTEEHKELEELVARFLGVEDAIVFSMGFATNSMNIPSLLGKGSLIISDELNHASLITGARLSGATT 245 (519)
T ss_pred HhcccccccchhcccHHHHHHHHHHHHHhcCCcceEEEeccccccccCcceeecCCcceeeccccchheeccccccCceE
Confidence 9999999999999999999999999999999999999999999999999999973 5788999 899
Q ss_pred EEecCCCHHHHHHHHHHhccccc
Q psy16850 146 YRFLANTTDIIKEASKELQEDMI 168 (174)
Q Consensus 146 ~~f~HNd~~~Le~~L~~~~~~~~ 168 (174)
+.|+||||++||++|+...-+.=
T Consensus 246 RVfkHNdm~~LEr~Lrd~I~~gq 268 (519)
T KOG1357|consen 246 RVFRHNDMQGLERLLRDAIVYGQ 268 (519)
T ss_pred EEEecCCHHHHHHHHHHHHhcCC
Confidence 99999999999999998876433
No 5
>PLN02483 serine palmitoyltransferase
Probab=99.96 E-value=2.5e-29 Score=227.71 Aligned_cols=153 Identities=25% Similarity=0.317 Sum_probs=140.4
Q ss_pred CChHHHHHHHHHHHHHhCCCC--------ceeeecccccCCCCceeeecCCeeEEEeccCcccCCCC-CccchHHHHHHH
Q psy16850 9 FPYEDFFHEQIMKKKRDHSYR--------VFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSC-HPKVKSAVREAL 79 (174)
Q Consensus 9 ~~~~~~~~~~L~~~~~~g~~r--------~~~~~~~~~~~~~~~~~~~~~g~~~inf~SndYLGL~~-~p~v~~a~~~al 79 (174)
.+|++||.++|+.+.+||+.| ++.+++|.+++.++....+.+++++|||+|||||||++ +|.+.+++.+++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~YLgl~~~~~~~~~~~~~ai 128 (489)
T PLN02483 49 LGLEDFYIRRLYLRIQDCFNRPIASAPDAWFDVVERVSNDNNKTLKRTTKTRRCLNLGSYNYLGFAAADEYCTPRVIESL 128 (489)
T ss_pred cCHHHHHHHHhhhhcccccCCCCCCCCCCeEEEEEeecCCCCceEEecCCCceEEEeecCCccCcCCCCHHHHHHHHHHH
Confidence 569999999999999999988 68889999988888888888899999999999999996 788999999999
Q ss_pred HHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE-----------------
Q psy16850 80 EKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL----------------- 142 (174)
Q Consensus 80 ~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s----------------- 142 (174)
++||+++|+||+.+|+...|.+||++||+|+|.|++++|++||.+|++++++|++ +|+.+.
T Consensus 129 ~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~~~ai~~~~G~~an~~~i~al~~--~Gd~Vi~d~~~h~s~~~~~~~~G 206 (489)
T PLN02483 129 KKYSASTCSSRVDGGTTKLHRELEELVARFVGKPAAIVFGMGYATNSTIIPALIG--KGGLIISDSLNHNSIVNGARGSG 206 (489)
T ss_pred HHhCCCCCccccccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhCC--CCCEEEEcchhhHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999987 454332
Q ss_pred EEEEEecCCCHHHHHHHHHHh
Q psy16850 143 IYFYRFLANTTDIIKEASKEL 163 (174)
Q Consensus 143 ~~~~~f~HNd~~~Le~~L~~~ 163 (174)
++++.|+|||+++||++|++.
T Consensus 207 a~v~~~~~~d~~~le~~l~~~ 227 (489)
T PLN02483 207 ATIRVFQHNTPSHLEEVLREQ 227 (489)
T ss_pred CeEEEEeCCCHHHHHHHHHhh
Confidence 578899999999999999864
No 6
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=99.95 E-value=2.2e-27 Score=208.43 Aligned_cols=155 Identities=45% Similarity=0.679 Sum_probs=129.4
Q ss_pred CChHHHHHHHHHHHHHhCCCCceeeecccccCCCCceeee--cCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCc
Q psy16850 9 FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYT--DSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGA 86 (174)
Q Consensus 9 ~~~~~~~~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~--~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs 86 (174)
|++.+++.++|++++++|++|.+++++...+... ...+. .+++++|||+|||||||++||+|++++.+++++||+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~ 79 (406)
T PRK13393 1 MNYEQYFQRQLDGLRREGRYRVFADLERQAGAFP-RATHHGPDGPREVTVWCSNDYLGMGQHPAVLAAMHEALDTCGAGA 79 (406)
T ss_pred CChHHHHHHHHHHHHHcCCCceeeeccccCCCcc-eeEEeccCCCccEEEeecccccCCCCCHHHHHHHHHHHHHcCCCC
Confidence 5677888889999999999999888765433111 00111 24589999999999999999999999999999999999
Q ss_pred cccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE-----------------EEEEEec
Q psy16850 87 GGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFL 149 (174)
Q Consensus 87 ~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~ 149 (174)
++||+++|+.+.|.+||++||+++|.|++++|+|||.||.+++.+|+...+|..+. +.++.|+
T Consensus 80 ~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~SG~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~ 159 (406)
T PRK13393 80 GGTRNISGTNHYHVLLEAELADLHGKEAALLFTSGYVSNWAALSTLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFR 159 (406)
T ss_pred cccccccCChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhhcCCCCCEEEEccchhHHHHHHHHHcCCeEEEeC
Confidence 99999999999999999999999999999999999999999999887532333222 3577899
Q ss_pred CCCHHHHHHHHHHhc
Q psy16850 150 ANTTDIIKEASKELQ 164 (174)
Q Consensus 150 HNd~~~Le~~L~~~~ 164 (174)
|||+++||++++...
T Consensus 160 ~~d~~~l~~~l~~~~ 174 (406)
T PRK13393 160 HNDPADLERKLSDLD 174 (406)
T ss_pred CCCHHHHHHHHHhcc
Confidence 999999999998763
No 7
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=99.95 E-value=3.1e-27 Score=206.81 Aligned_cols=156 Identities=46% Similarity=0.702 Sum_probs=128.7
Q ss_pred CChHHHHHHHHHHHHHhCCCCceeeecccccCCCCceeeec-CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCcc
Q psy16850 9 FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTD-SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAG 87 (174)
Q Consensus 9 ~~~~~~~~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~-~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~ 87 (174)
|++.+++.++|+++++.|++|.+++++...+.......+.. +|++++||+|||||||+.||+|++|+.+++++||+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~ 80 (402)
T TIGR01821 1 MDYDQFFNKEIDKLHLEGRYRVFADLERQAGEFPFAQWHRPDGAKDVTVWCSNDYLGMGQHPEVLQAMHETLDKYGAGAG 80 (402)
T ss_pred CChHHHHHHHHHHHHHcCCCceeeeccccccCCCcceEEecCCCeeEEEeEccCcCCCCCCHHHHHHHHHHHHHcCCCCc
Confidence 34567788899999999999999887654331111112223 45999999999999999999999999999999999999
Q ss_pred ccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCee----------------E-EEEEEecC
Q psy16850 88 GTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTE----------------L-IYFYRFLA 150 (174)
Q Consensus 88 ~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~----------------s-~~~~~f~H 150 (174)
+||+++|+.+.|.+||++||+++|.+++++|+||+.||.++|.++....++... + +.+.+|+|
T Consensus 81 ~s~~~~g~~~~~~~Le~~la~~~g~~~~l~~~sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~~ 160 (402)
T TIGR01821 81 GTRNISGTNIPHVELEAELADLHGKESALVFTSGYVANDATLATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIFRH 160 (402)
T ss_pred chhhhhCCcHHHHHHHHHHHHHhCCCeEEEECchHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHHHHHHcCCeEEEECC
Confidence 999999999999999999999999999999999999999999988642122211 1 35678999
Q ss_pred CCHHHHHHHHHHhc
Q psy16850 151 NTTDIIKEASKELQ 164 (174)
Q Consensus 151 Nd~~~Le~~L~~~~ 164 (174)
||+++||++++...
T Consensus 161 ~d~~~l~~~l~~~~ 174 (402)
T TIGR01821 161 NDVAHLEKLLQSVD 174 (402)
T ss_pred CCHHHHHHHHHhcc
Confidence 99999999998654
No 8
>KOG1359|consensus
Probab=99.95 E-value=7.2e-29 Score=211.87 Aligned_cols=145 Identities=22% Similarity=0.379 Sum_probs=123.3
Q ss_pred HHHHHHHhCCCCceeeecccccCCCCceeeecC--CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCC
Q psy16850 18 QIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDS--EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGN 95 (174)
Q Consensus 18 ~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~~--g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~ 95 (174)
.|+-++..|.|..-+++.+.++ +.+.++ .++++|||.||||||+.||+|+++.++++++||.|.+++|+++|+
T Consensus 36 ~legi~gagtwk~erVi~s~q~-----p~i~v~G~~k~ilnFcaNnYLGLsshPeii~a~~~aleeyGaGlssvrfIcGt 110 (417)
T KOG1359|consen 36 ELEGIKGAGTWKRERVITSRQG-----PTIQVKGSDKKILNFCANNYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGT 110 (417)
T ss_pred ccceecccccceeeeEEeeccc-----ceEEEeccccceeeecccccccccCChHHHHHHHHHHHHhCCCccceeEEecc
Confidence 3555666777887777766543 334444 478999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcc--------------cCCCCeeEEEEEEecCCCHHHHHHHHH
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGK--------------MIPYFTELIYFYRFLANTTDIIKEASK 161 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~--------------~~~g~~~s~~~~~f~HNd~~~Le~~L~ 161 (174)
.++|..||++||+|+|+|+||+|+|||.||.|++-+|.. +++|+++. ++|+|-|+-+||.+++
T Consensus 111 q~iHk~LE~kiAqfh~rED~ilypscfdANag~feail~pedAvfSDeLNhASIIdGirLc---kry~h~dv~~l~~~l~ 187 (417)
T KOG1359|consen 111 QDIHKLLESKIAQFHGREDTILYPSCFDANAGAFEAILTPEDAVFSDELNHASIIDGIRLC---KRYRHVDVFDLEHCLI 187 (417)
T ss_pred hHHHHHHHHHHHHHhCCCceEEeccccccchHHHHHhcChhhhhhccccccchhhhhhHHH---hhhccchhHHHHHHHH
Confidence 999999999999999999999999999999999999864 24454443 4999999999999999
Q ss_pred Hhccccccc
Q psy16850 162 ELQEDMIDL 170 (174)
Q Consensus 162 ~~~~~~~~~ 170 (174)
+..+-+.++
T Consensus 188 ~a~k~r~kl 196 (417)
T KOG1359|consen 188 SACKMRLKL 196 (417)
T ss_pred HhhhheEEE
Confidence 888765543
No 9
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.95 E-value=7.9e-27 Score=204.34 Aligned_cols=156 Identities=47% Similarity=0.702 Sum_probs=128.6
Q ss_pred CChHHHHHHHHHHHHHhCCCCceeeecccccCCCCceeeecC--CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCc
Q psy16850 9 FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDS--EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGA 86 (174)
Q Consensus 9 ~~~~~~~~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~~--g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs 86 (174)
|.+..++.+.|+.++++|++|.+++++...+.......+..+ |++++||+|||||||+.||+|++++.+++++||.|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dylgl~~~p~v~~a~~~~~~~~~~~~ 80 (407)
T PRK09064 1 MDYEAFFENALDRLKAEGRYRVFADLERIAGRFPYATWRRPDGGEREVTVWCSNDYLGMGQHPKVIEAMIEALDRCGAGA 80 (407)
T ss_pred CCHHHHHHHHHHHHHHcCCCceeeecccccCCCCceEEEeecCCCceEEEEECCCCcCCCCCHHHHHHHHHHHHHcCCCC
Confidence 456678888999999999999988876543321111121233 589999999999999999999999999999999999
Q ss_pred cccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCC----------------eeE-EEEEEec
Q psy16850 87 GGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYF----------------TEL-IYFYRFL 149 (174)
Q Consensus 87 ~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~----------------~~s-~~~~~f~ 149 (174)
++||.++|+.+.|.+||++||+|+|.+++++|+|||.||.++|.++....++. +.+ +.+..|+
T Consensus 81 ~~s~~~~g~~~~~~~l~~~la~~~g~~~~~~~~sG~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~ 160 (407)
T PRK09064 81 GGTRNISGTNHYHVELERELADLHGKEAALVFTSGYVSNDATLSTLAKLIPDCVIFSDELNHASMIEGIRRSRCEKHIFR 160 (407)
T ss_pred CCcCcCccCHHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHHHcCCcEEEEC
Confidence 99999999999999999999999999999999999999999999886421222 111 3567899
Q ss_pred CCCHHHHHHHHHHhc
Q psy16850 150 ANTTDIIKEASKELQ 164 (174)
Q Consensus 150 HNd~~~Le~~L~~~~ 164 (174)
|||+++||+++++..
T Consensus 161 ~~d~~~le~~l~~~~ 175 (407)
T PRK09064 161 HNDVAHLEELLAAAD 175 (407)
T ss_pred CCCHHHHHHHHHhcc
Confidence 999999999998653
No 10
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=99.92 E-value=3.3e-25 Score=195.37 Aligned_cols=109 Identities=19% Similarity=0.315 Sum_probs=100.1
Q ss_pred EEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcc
Q psy16850 55 TVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGK 134 (174)
Q Consensus 55 inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~ 134 (174)
|||+|||||||++||++++++.+++++||+|+||||..+|+...|.+||++||+|+|.|+|++|+|||+||+++|.++.+
T Consensus 1 ~~f~s~dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~e~al~~~sG~~a~~~~i~~l~~ 80 (392)
T PLN03227 1 LNFATHDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTESAILYSDGASTTSSTVAAFAK 80 (392)
T ss_pred CCCcCcCccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHhCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cCCCCeeE-----------------EEEEEecCCCHHHHHHHHHHhcc
Q psy16850 135 MIPYFTEL-----------------IYFYRFLANTTDIIKEASKELQE 165 (174)
Q Consensus 135 ~~~g~~~s-----------------~~~~~f~HNd~~~Le~~L~~~~~ 165 (174)
+|+++. +.++.|+|||+++|+.+++...+
T Consensus 81 --~GD~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~d~~~l~~~~~~i~~ 126 (392)
T PLN03227 81 --RGDLLVVDRGVNEALLVGVSLSRANVRWFRHNDMKDLRRVLEQVRA 126 (392)
T ss_pred --CCCEEEEeccccHHHHHHHHHcCCeEEEeCCCCHHHHHHHHHHhhh
Confidence 454332 36778999999999999887753
No 11
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=99.92 E-value=5.9e-24 Score=186.79 Aligned_cols=155 Identities=42% Similarity=0.683 Sum_probs=128.2
Q ss_pred CChHHHHHHHHHHHHHhCCCCceeeecccccCCCCceee--ecCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCc
Q psy16850 9 FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEY--TDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGA 86 (174)
Q Consensus 9 ~~~~~~~~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~--~~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs 86 (174)
|.+.+++...|++.++.|++|+.+.++..++... ...+ ..+|+++++|+|||||||+.||++++++.+++++||+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~sn~yl~l~~~p~v~~a~~~~~~~~~~~~ 80 (410)
T PRK13392 2 MNYDSYFDAALAQLHQEGRYRVFADLEREAGRFP-RARDHGPDGPRRVTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGA 80 (410)
T ss_pred CChHHHHHHHHHHHHHcCCCccccccccccCccc-eeeecccCCCceEEEEECCCccCCCCCHHHHHHHHHHHHHcCCCC
Confidence 5567888889999999999999887765433111 0011 124689999999999999999999999999999999999
Q ss_pred cccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE-----------------EEEEEec
Q psy16850 87 GGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFL 149 (174)
Q Consensus 87 ~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~ 149 (174)
++||.++|+.+.|.+||++||+++|.+++++|+||+.||.++|.+|+...+|..+. +.+..|+
T Consensus 81 ~~s~~~~~~~~~~~~Le~~la~~~g~~~~i~~~sG~~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~ 160 (410)
T PRK13392 81 GGTRNISGTSHPHVLLERELADLHGKESALLFTSGYVSNDAALSTLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFR 160 (410)
T ss_pred chhhhcccChHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHHHcCCeEEEEe
Confidence 99999999999999999999999999999999999999999999886422333211 3667899
Q ss_pred CCCHHHHHHHHHHhc
Q psy16850 150 ANTTDIIKEASKELQ 164 (174)
Q Consensus 150 HNd~~~Le~~L~~~~ 164 (174)
|||+++|++.+++..
T Consensus 161 ~~d~~~l~~~l~~~~ 175 (410)
T PRK13392 161 HNDLADLEEQLASVD 175 (410)
T ss_pred CCCHHHHHHHHHhcc
Confidence 999999999998764
No 12
>KOG1358|consensus
Probab=99.92 E-value=9.2e-26 Score=197.92 Aligned_cols=122 Identities=20% Similarity=0.282 Sum_probs=112.6
Q ss_pred CceeeecCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchh
Q psy16850 43 AAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCY 122 (174)
Q Consensus 43 ~~~~~~~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy 122 (174)
..+.++++|++++||+|+|||||..++++++.+...+++||+|+||.|-++|+.+.|-+||+.||+|+|+|++++|+-||
T Consensus 85 ~~~~~~i~G~~~~N~aS~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G~E~aivYs~gF 164 (467)
T KOG1358|consen 85 MLPHVTIDGKDVLNFASANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMGTEDAIVYSYGF 164 (467)
T ss_pred cCCceEecCceeecccchhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhCCcceeeecccc
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccc--------------CCCCeeE-EEEEEecCCCHHHHHHHHHHhc
Q psy16850 123 VANDSTLFTLGKM--------------IPYFTEL-IYFYRFLANTTDIIKEASKELQ 164 (174)
Q Consensus 123 ~aN~~~i~aL~~~--------------~~g~~~s-~~~~~f~HNd~~~Le~~L~~~~ 164 (174)
.|--++|||+++. ..|..+| .++..|+||||++||+++.+..
T Consensus 165 ~ti~S~ipafsKrGDIi~~de~~nfaIq~GlqlSRS~i~~Fkhndm~~lerll~E~~ 221 (467)
T KOG1358|consen 165 STIESAIPAFSKRGDIIFVDEAVNFAIQKGLQLSRSTISYFKHNDMEDLERLLPEQE 221 (467)
T ss_pred chhhhcchhhhccCcEEEEehhhhHHHHHHHhhhhheeEEecCCCHHHHHHhccCcc
Confidence 9999999999974 2334445 6889999999999999998877
No 13
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=99.90 E-value=7.5e-23 Score=177.54 Aligned_cols=145 Identities=23% Similarity=0.381 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHhCCCCceeeecccccCCCCceeeec-CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccc
Q psy16850 12 EDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTD-SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTR 90 (174)
Q Consensus 12 ~~~~~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~-~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr 90 (174)
..++..+|++++++|.+|..+.+....+ ..+.. +|+++|||+|||||||+.+|++++++.+++++||.|.++||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~~i~~~~~~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~ 76 (393)
T TIGR01822 2 YAQLAAELESIREAGLFKSERIITSPQG-----ADIRVADGREVLNFCANNYLGLSSHPDLIQAAKDALDEHGFGMSSVR 76 (393)
T ss_pred hhHHHHHHHHHHHcCCCCcccccccCCC-----ceEEecCCceEEEeeCCCccccCCCHHHHHHHHHHHHHhCCCCCCcC
Confidence 3456678889999999998877765432 33445 89999999999999999999999999999999999999999
Q ss_pred cccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE-----------------EEEEEecCCCH
Q psy16850 91 NISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLANTT 153 (174)
Q Consensus 91 ~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~HNd~ 153 (174)
.+.|+.++|.+||+.||+++|.+++++|+||+.||.+++.+|.+ +|+... +....|.|+|+
T Consensus 77 ~~~G~~~~~~~le~~ia~~~g~~~~ii~~~~~~a~~~~~~~l~~--~gd~vi~~~~~~~s~~~~~~~~~~~~~~~~~~d~ 154 (393)
T TIGR01822 77 FICGTQDIHKELEAKIAAFLGTEDTILYASCFDANGGLFETLLG--AEDAIISDALNHASIIDGVRLCKAKRYRYANNDM 154 (393)
T ss_pred cccCChHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhCC--CCCEEEEeccccHHHHHHHHhcCCceEEeCCCCH
Confidence 99999999999999999999999999999999999999999976 454332 24567899999
Q ss_pred HHHHHHHHHh
Q psy16850 154 DIIKEASKEL 163 (174)
Q Consensus 154 ~~Le~~L~~~ 163 (174)
++||+.+++.
T Consensus 155 ~~l~~~i~~~ 164 (393)
T TIGR01822 155 ADLEAQLKEA 164 (393)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 14
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=99.90 E-value=1.4e-23 Score=182.59 Aligned_cols=113 Identities=22% Similarity=0.311 Sum_probs=99.1
Q ss_pred eeEEEeccCcccCCCCCccchHHHHHHHHHc-------CCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHH
Q psy16850 52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKF-------GTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVA 124 (174)
Q Consensus 52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~-------G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~a 124 (174)
.++|||+|||||||+.+|++++++.+++++| |+|++|||++.|+..+|+++|++||+|+|.+++++|+|||.|
T Consensus 4 ~~~~~~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~~l~~~sG~~a 83 (370)
T PRK05937 4 SLSIDFVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPEAFIVPSGYMA 83 (370)
T ss_pred CceEEeECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCeEEEECChHHH
Confidence 4689999999999999999999999999999 699999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccC------CCCeeE---------EEEEEecCCCHHHHHHHHHHhc
Q psy16850 125 NDSTLFTLGKMI------PYFTEL---------IYFYRFLANTTDIIKEASKELQ 164 (174)
Q Consensus 125 N~~~i~aL~~~~------~g~~~s---------~~~~~f~HNd~~~Le~~L~~~~ 164 (174)
|+++++++.+.. +..|.+ .....|+|||+++||++|++..
T Consensus 84 ~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 138 (370)
T PRK05937 84 NLGLCAHLSSVTDYVLWDEQVHISVVYSLSVISGWHQSFRHNDLDHLESLLESCR 138 (370)
T ss_pred HHHHHHHhCCCCCEEEEEhhhhHHHHHHHHHcCCceEEecCCCHHHHHHHHHhhh
Confidence 999999886420 111111 2457899999999999998653
No 15
>PLN02822 serine palmitoyltransferase
Probab=99.89 E-value=2.9e-23 Score=187.82 Aligned_cols=122 Identities=20% Similarity=0.263 Sum_probs=109.6
Q ss_pred ceeeecCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhH
Q psy16850 44 AYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYV 123 (174)
Q Consensus 44 ~~~~~~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~ 123 (174)
+.++.++|+++|||+|||||||..||+|++++.+++++||+|+||||.++|+.+.|.+||++||+|++.+++++|++||.
T Consensus 101 G~~i~~~G~~~id~~s~~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~~~~i~~s~G~~ 180 (481)
T PLN02822 101 GPHTIINGKDVVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGTPDSILYSYGLS 180 (481)
T ss_pred CCeEEECCceEEEeECCCcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCCCCEEEECCHHH
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccc------CCCC--------eeE-EEEEEecCCCHHHHHHHHHHhcc
Q psy16850 124 ANDSTLFTLGKM------IPYF--------TEL-IYFYRFLANTTDIIKEASKELQE 165 (174)
Q Consensus 124 aN~~~i~aL~~~------~~g~--------~~s-~~~~~f~HNd~~~Le~~L~~~~~ 165 (174)
+|.++|+++++. .+++ .++ ++++.|+|||+++|+..+++...
T Consensus 181 a~~sai~a~~~~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~nd~~~l~~~l~~~~~ 237 (481)
T PLN02822 181 TIFSVIPAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNTLEKLTA 237 (481)
T ss_pred HHHHHHHHhCCCCCEEEEeCCccHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh
Confidence 999999999873 1222 223 58899999999999999987654
No 16
>PRK07179 hypothetical protein; Provisional
Probab=99.85 E-value=3.1e-20 Score=163.10 Aligned_cols=146 Identities=21% Similarity=0.217 Sum_probs=113.5
Q ss_pred CChHHHHHHHHHHHHHhCCCCceeeecccccCCCCceeeecCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccc
Q psy16850 9 FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGG 88 (174)
Q Consensus 9 ~~~~~~~~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~ 88 (174)
..+-.|++++++..-++.......... -..-...|+.++||+|||||||++||+|++++.+++++||.++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~g~~~~~~~~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~ 90 (407)
T PRK07179 19 PPLPDFIEERLDKYIEERVNKNWNGKH--------LVLGKTPGPDAIILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVM 90 (407)
T ss_pred CCCcHHHHHHHHHHHHHhhccCcCCce--------EEeecCCCCcEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCc
Confidence 335577777776555543322210000 000123678899999999999999999999999999999988877
Q ss_pred cccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE-----------------EEEEEecCC
Q psy16850 89 TRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLAN 151 (174)
Q Consensus 89 Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~HN 151 (174)
|+...+..+.+.+||++||+++|.+.+++++||+.||.++|.+++. +|++.. +.+..|+||
T Consensus 91 s~~~~~~~~~~~~le~~la~~~g~~~~~~~~sG~~An~~~l~~l~~--~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~~~ 168 (407)
T PRK07179 91 SAVFLHDDSPKPQFEKKLAAFTGFESCLLCQSGWAANVGLLQTIAD--PNTPVYIDFFAHMSLWEGVRAAGAQAHPFRHN 168 (407)
T ss_pred cccccCCchHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhCC--CCCEEEEECCcCHHHHHHHHHCCCeEEEecCC
Confidence 7777777789999999999999999999999999999999999976 344322 367899999
Q ss_pred CHHHHHHHHHHhc
Q psy16850 152 TTDIIKEASKELQ 164 (174)
Q Consensus 152 d~~~Le~~L~~~~ 164 (174)
|+++|++.|++..
T Consensus 169 d~~~l~~~l~~~~ 181 (407)
T PRK07179 169 DVDHLRRQIERHG 181 (407)
T ss_pred CHHHHHHHHHhcC
Confidence 9999999997643
No 17
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=99.73 E-value=2.4e-16 Score=135.43 Aligned_cols=148 Identities=27% Similarity=0.421 Sum_probs=129.8
Q ss_pred CChHHHHHHHHHHHHHhCCCCceeeecccccCCCCceeeecCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccc
Q psy16850 9 FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGG 88 (174)
Q Consensus 9 ~~~~~~~~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~ 88 (174)
|+|.+.++..|.+++..|+||.++++.+..+ .++..+|+++|+|++|+++|+..+|+|++++.++++.|+.+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~~~~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~ 75 (385)
T PRK05958 1 MSWLDRLEAALAQRRAAGLYRSLRPREGGAG-----RWLVVDGRRMLNFASNDYLGLARHPRLIAAAQQAARRYGAGSGG 75 (385)
T ss_pred CcHHHHHHHHHHHHHHcCCCccccccccCCC-----ceeEeCCceEEEeeCCCcccCCCCHHHHHHHHHHHHhcCCCCCC
Confidence 6788899999999999999999999887644 34455899999999999999999999999999999999988888
Q ss_pred cccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE-----------------EEEEEecCC
Q psy16850 89 TRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLAN 151 (174)
Q Consensus 89 Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~HN 151 (174)
++...|...+..++++.+|+++|.+.++++++|..+|..++.++.+ +|.... +.++.++++
T Consensus 76 ~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~g~~~~~~~l~~~~~--~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~~~ 153 (385)
T PRK05958 76 SRLVTGNSPAHEALEEELAEWFGAERALLFSSGYAANLAVLTALAG--KGDLIVSDKLNHASLIDGARLSRARVRRYPHN 153 (385)
T ss_pred cCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhCC--CCCEEEEeCccCHHHHHHHHhcCCceEEeCCC
Confidence 8998899999999999999999999999999999999998888866 444332 356788899
Q ss_pred CHHHHHHHHHHh
Q psy16850 152 TTDIIKEASKEL 163 (174)
Q Consensus 152 d~~~Le~~L~~~ 163 (174)
|+++||++++..
T Consensus 154 d~~~l~~~i~~~ 165 (385)
T PRK05958 154 DVDALEALLAKW 165 (385)
T ss_pred CHHHHHHHHHhc
Confidence 999999999764
No 18
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=99.67 E-value=6.2e-16 Score=131.23 Aligned_cols=110 Identities=46% Similarity=0.670 Sum_probs=97.6
Q ss_pred eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHH
Q psy16850 52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFT 131 (174)
Q Consensus 52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~a 131 (174)
++++|||||||||+++||+|++++.+++++|+.+.++++...|..+.+++|++.||+++|.++++++++|..+|..++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~iv~~sg~~a~~~~~~~ 80 (349)
T cd06454 1 KKVLNFCSNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLST 80 (349)
T ss_pred CCceecccCCccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCCCCEEEeccHHHHHHHHHHH
Confidence 36899999999999999999999999999998877788888899999999999999999999999999999999999988
Q ss_pred hcccCCCCeeE-----------------EEEEEecCCCHHHHHHHHHHh
Q psy16850 132 LGKMIPYFTEL-----------------IYFYRFLANTTDIIKEASKEL 163 (174)
Q Consensus 132 L~~~~~g~~~s-----------------~~~~~f~HNd~~~Le~~L~~~ 163 (174)
+.+ +|.++. +.+..++..|+++||+++++.
T Consensus 81 ~~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~le~~i~~~ 127 (349)
T cd06454 81 LAG--KGDLIISDSLNHASIIDGIRLSGAKKRIFKHNDMEDLEKLLREA 127 (349)
T ss_pred hcC--CCCEEEEehhhhHHHHHHHHHcCCceEEecCCCHHHHHHHHHHh
Confidence 875 444322 356778899999999999875
No 19
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=99.67 E-value=3.2e-15 Score=129.15 Aligned_cols=146 Identities=27% Similarity=0.435 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHHHHhCCCCceeeecccccCCCCceeeec-CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCcccc
Q psy16850 11 YEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTD-SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGT 89 (174)
Q Consensus 11 ~~~~~~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~-~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~S 89 (174)
+..++++.|++++++|.++....+.+. .+.+++. +|+.+|||++++|+|+..+|++++++.+++++++.+.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~g~~~i~l~~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~ 79 (397)
T PRK06939 5 FYAQLREELEEIKAEGLYKEERVITSP-----QGADITVADGKEVINFCANNYLGLANHPELIAAAKAALDSHGFGMASV 79 (397)
T ss_pred HHHHHHHHHHHHHHcCCCcccccccCC-----CCceEEecCCCeEEEeeccCccccCCCHHHHHHHHHHHHHcCCCCccc
Confidence 356788889999999998864433322 3345555 8999999999999999999999999999999998888889
Q ss_pred ccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE-----------------EEEEEecCCC
Q psy16850 90 RNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLANT 152 (174)
Q Consensus 90 r~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~HNd 152 (174)
+...|..++.+++++.+|+++|.++.+++++|..+|.+++.++.+ +|.... ++++.++++|
T Consensus 80 ~~~~G~~~l~~~l~~~la~~~g~~~~i~~tsG~~a~~~~~~~l~~--~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~d 157 (397)
T PRK06939 80 RFICGTQDLHKELEEKLAKFLGTEDAILYSSCFDANGGLFETLLG--KEDAIISDALNHASIIDGVRLCKAKRYRYANND 157 (397)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCCcEEEEcChHHHHHHHHHHhCC--CCCEEEEEhhhhHHHHHHHHhcCCceEEeCCCC
Confidence 999999999999999999999999999999999999999999876 454332 3567889999
Q ss_pred HHHHHHHHHHh
Q psy16850 153 TDIIKEASKEL 163 (174)
Q Consensus 153 ~~~Le~~L~~~ 163 (174)
+++|++.+++.
T Consensus 158 ~~~l~~~i~~~ 168 (397)
T PRK06939 158 MADLEAQLKEA 168 (397)
T ss_pred HHHHHHHHHhh
Confidence 99999999764
No 20
>PRK07505 hypothetical protein; Provisional
Probab=99.63 E-value=3.3e-15 Score=131.21 Aligned_cols=114 Identities=23% Similarity=0.268 Sum_probs=93.4
Q ss_pred ecCCeeEEEeccCcccCCCCCccchHHHHHHHHHcC-CCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHH
Q psy16850 48 TDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFG-TGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAND 126 (174)
Q Consensus 48 ~~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G-~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~ 126 (174)
..+|+++|||+||+||||..||+|++|+.+.+++|| .++++++... ..+++.+||++||+++|. ++++|+||+.||.
T Consensus 42 d~~g~~~ld~~s~~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~-~~~~~~~l~~~la~~~~~-~~~~~~sG~~a~~ 119 (402)
T PRK07505 42 LADGHTFVNFVSCSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRV-RSQILKDLEEALSELFGA-SVLTFTSCSAAHL 119 (402)
T ss_pred ecCCceEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCCccchhh-hhHHHHHHHHHHHHHhCC-CEEEECChHHHHH
Confidence 368999999999999999999999999999999998 6777776643 578999999999999998 8999999999999
Q ss_pred HHHHHhccc-C---CC--------CeeE-----------EEEEEecCCCHHHHHHHHHHh
Q psy16850 127 STLFTLGKM-I---PY--------FTEL-----------IYFYRFLANTTDIIKEASKEL 163 (174)
Q Consensus 127 ~~i~aL~~~-~---~g--------~~~s-----------~~~~~f~HNd~~~Le~~L~~~ 163 (174)
++|..+... . .. .|-+ ..++.|+|||+++|+++++..
T Consensus 120 ~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~~d~~~l~~~~~~~ 179 (402)
T PRK07505 120 GILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADETEVETIDHNDLDALEDICKTN 179 (402)
T ss_pred HHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCCCCHHHHHHHHhcC
Confidence 999765410 0 00 0001 357889999999999988643
No 21
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=99.61 E-value=3.2e-15 Score=132.94 Aligned_cols=106 Identities=25% Similarity=0.305 Sum_probs=90.0
Q ss_pred eEEEeccCcccCCCCCccchHHHHHHH-HHcCCCccccccccCCchHHHHHHH----HHHHHhCCCcEEE-ecchhHHHH
Q psy16850 53 EVTVYCSNDYLGMSCHPKVKSAVREAL-EKFGTGAGGTRNISGNSLFHEKLEE----DVARLHQKEAGLV-FTSCYVAND 126 (174)
Q Consensus 53 ~~inf~SndYLGL~~~p~v~~a~~~al-~~~G~gs~~Sr~~~G~~~~~~~LE~----~lA~~~g~e~al~-f~sGy~aN~ 126 (174)
.+-+++||||+ ||++++++..++ .+||.|++|||+++| .+.+++||+ .+|+++|.+.|++ ++|||+||.
T Consensus 30 ~~~l~~sen~~----~p~v~~a~~~~~~~~~~~g~~gsr~~~G-~~~~~~lE~~~~~~la~l~g~~~alv~~~SG~~A~~ 104 (416)
T PRK13034 30 HLELIASENFT----SPAVMEAQGSVLTNKYAEGYPGKRYYGG-CEFVDEVEALAIERAKQLFGCDYANVQPHSGSQANG 104 (416)
T ss_pred CeeecccccCC----CHHHHHHhcchhhcCCCCCCCCCcccCC-ChHHHHHHHHHHHHHHHHhCCCceEEecCCcHHHHH
Confidence 46689999998 999999999995 999999999999999 689999999 9999999999977 489999999
Q ss_pred HHHHHhcccCCCCeeE--------------------EEE--EEecC------CCHHHHHHHHHHhcc
Q psy16850 127 STLFTLGKMIPYFTEL--------------------IYF--YRFLA------NTTDIIKEASKELQE 165 (174)
Q Consensus 127 ~~i~aL~~~~~g~~~s--------------------~~~--~~f~H------Nd~~~Le~~L~~~~~ 165 (174)
+++.+|++ +|+++. ..+ .+|.| +|+++||++++...+
T Consensus 105 ~~l~al~~--~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 169 (416)
T PRK13034 105 AVYLALLK--PGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKP 169 (416)
T ss_pred HHHHHhcC--CCCEEEEcCccceeeeecCCcceeccceeeeEEcccccccCCcCHHHHHHHHhhcCC
Confidence 99999986 333222 111 47888 999999999976433
No 22
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=99.59 E-value=4.3e-14 Score=122.24 Aligned_cols=141 Identities=28% Similarity=0.403 Sum_probs=119.4
Q ss_pred HHHHHHHHhCCCCceeeecccccCCCCceeeecCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCc
Q psy16850 17 EQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNS 96 (174)
Q Consensus 17 ~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~ 96 (174)
+.|+..++.|.|.....+.+.. +.++..+|+++|||+++||||+..+|++++++.+++++++.+.++.+...|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-----g~~~~~~g~~~id~~~~~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~ 77 (385)
T TIGR01825 3 QDLNGLKENGLYISIRVLESAQ-----GPRVRVNGKEVINLSSNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTL 77 (385)
T ss_pred hHHHHHHHcCCcccccccccCC-----CceEEECCceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCc
Confidence 4567778889998777776543 33455899999999999999999999999999999999988778888888999
Q ss_pred hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE-----------------EEEEEecCCCHHHHHHH
Q psy16850 97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLANTTDIIKEA 159 (174)
Q Consensus 97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~HNd~~~Le~~ 159 (174)
++.+++++.+++++|.+.+++++||..+|..++.++.+ +|..+. +.+..++|.|+++|++.
T Consensus 78 ~l~~~l~~~l~~~~g~~~~i~~~sG~~a~~~a~~~~~~--~gd~vi~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~ 155 (385)
T TIGR01825 78 RLHEELEEKLAKFKKTEAALVFQSGFNTNQGVLSALLR--KGDIVLSDELNHASIIDGLRLTKATKKIYKHADMDDLDRV 155 (385)
T ss_pred HHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhCC--CCCEEEEEccccHHHHHHHHhcCCceEEeCCCCHHHHHHH
Confidence 99999999999999999999999999999999998876 444322 24566889999999999
Q ss_pred HHHhc
Q psy16850 160 SKELQ 164 (174)
Q Consensus 160 L~~~~ 164 (174)
+++..
T Consensus 156 l~~~~ 160 (385)
T TIGR01825 156 LRENP 160 (385)
T ss_pred HHhhc
Confidence 88653
No 23
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=99.57 E-value=6.1e-14 Score=119.09 Aligned_cols=119 Identities=31% Similarity=0.468 Sum_probs=104.3
Q ss_pred CceeeecCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchh
Q psy16850 43 AAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCY 122 (174)
Q Consensus 43 ~~~~~~~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy 122 (174)
.+.++..+|+++|+|++|||||+..+|++++++.+++++||.+.++++...|......+|++.||+|+|.+..+++++|.
T Consensus 7 ~~~~~~~~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~G~ 86 (360)
T TIGR00858 7 PGPEVVRDGRRLLNFSSNDYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGTEAALLFSSGY 86 (360)
T ss_pred CCCeEEECCceEEecccCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCCEEEECchH
Confidence 34556679999999999999999999999999999999999888888888999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCCeeE-----------------EEEEEecCCCHHHHHHHHHHh
Q psy16850 123 VANDSTLFTLGKMIPYFTEL-----------------IYFYRFLANTTDIIKEASKEL 163 (174)
Q Consensus 123 ~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~HNd~~~Le~~L~~~ 163 (174)
.+++.++.++.+ +|..+. +.++.++.+|+++|++.+++.
T Consensus 87 ~~~~~~l~~~~~--~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~ 142 (360)
T TIGR00858 87 LANVGVISALVG--KGDLILSDALNHASLIDGCRLSGARVRRYRHNDVEHLERLLEKN 142 (360)
T ss_pred HHHHHHHHHhCC--CCCEEEEEccccHHHHHHHHhcCCceEEecCCCHHHHHHHHHHc
Confidence 999998888865 454332 356678899999999999864
No 24
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=99.50 E-value=4.6e-14 Score=123.02 Aligned_cols=66 Identities=27% Similarity=0.263 Sum_probs=63.0
Q ss_pred cCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--CcEEEecchhHHHHHHHHHhcc
Q psy16850 59 SNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--EAGLVFTSCYVANDSTLFTLGK 134 (174)
Q Consensus 59 SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--e~al~f~sGy~aN~~~i~aL~~ 134 (174)
-||||||++||+|++++.+++++|| |+..+|++||++||+|+|. |.+++|++||.||.+++.+|++
T Consensus 26 ~~~ylgl~~~~~~~~~~~~~~~~~~----------g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~ 93 (346)
T TIGR03576 26 LYDLTGLAGGFKIDEEDLELLETYV----------GPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEP 93 (346)
T ss_pred ccccccCCCChhHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCC
Confidence 5899999999999999999999996 5779999999999999999 9999999999999999999986
No 25
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=99.38 E-value=2.7e-12 Score=112.74 Aligned_cols=111 Identities=17% Similarity=0.147 Sum_probs=88.5
Q ss_pred ecCCeeEEEeccCcccCCCC---CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHH
Q psy16850 48 TDSEKEVTVYCSNDYLGMSC---HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVA 124 (174)
Q Consensus 48 ~~~g~~~inf~SndYLGL~~---~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~a 124 (174)
..+|+++|||+|+ |++++. ||+|++|+.+.+++++.++ +.+ .++.+.+||++|++++|.+.+++++||+.|
T Consensus 33 ~~~g~~~lD~~s~-~~~~~~Gh~~p~v~~a~~~~~~~~~~~~---~~~--~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A 106 (401)
T TIGR01885 33 DVEGKRYLDFLSA-YSAVNQGHCHPKIVKALTEQAQKLTLSS---RAF--YNDVFGEFAEYVTKLFGYDKVLPMNTGAEA 106 (401)
T ss_pred eCCCCEEEEcccC-HhhccCCCCCHHHHHHHHHHHHhccccc---ccc--CCHHHHHHHHHHHhhcCCCEEEEeCccHHH
Confidence 3589999999995 999985 9999999999999877443 322 578999999999999999999999999999
Q ss_pred HHHHHHHhc-----------cc-----CCCC---------eeE-------------EEEEEecCCCHHHHHHHHHHhc
Q psy16850 125 NDSTLFTLG-----------KM-----IPYF---------TEL-------------IYFYRFLANTTDIIKEASKELQ 164 (174)
Q Consensus 125 N~~~i~aL~-----------~~-----~~g~---------~~s-------------~~~~~f~HNd~~~Le~~L~~~~ 164 (174)
|.++|..+. +. ..++ .++ ..+..|+|||+++||++|++..
T Consensus 107 ~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 184 (401)
T TIGR01885 107 VETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYNNLEALEEALEDHG 184 (401)
T ss_pred HHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCCCCHHHHHHHHHhcC
Confidence 999999851 10 0111 110 1357899999999999998653
No 26
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=99.34 E-value=8.4e-12 Score=109.99 Aligned_cols=107 Identities=18% Similarity=0.081 Sum_probs=85.1
Q ss_pred ecCCeeEEEecc---CcccCCCCCccchHHHHHHHHHc-CCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhH
Q psy16850 48 TDSEKEVTVYCS---NDYLGMSCHPKVKSAVREALEKF-GTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYV 123 (174)
Q Consensus 48 ~~~g~~~inf~S---ndYLGL~~~p~v~~a~~~al~~~-G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~ 123 (174)
..+|+++|||+| |+|||.+ ||+|.+|+.+.++++ .++++ ..++.+.+||++|+++++.+.+++++||+.
T Consensus 31 d~dG~~ylD~~~g~~~~~lGh~-~p~v~~a~~~~~~~~~~~~~~------~~~~~~~~la~~L~~~~~~~~~~f~~SGse 103 (397)
T TIGR03246 31 DQQGKEYIDFAGGIAVNALGHA-HPELVKALIEQADKLWHIGNG------YTNEPVLRLAKKLVDATFADKVFFCNSGAE 103 (397)
T ss_pred eCCCCEEEECCcCHhhccCCCC-CHHHHHHHHHHHHhcccccCc------cCCHHHHHHHHHHHhhCCCCEEEEeCCcHH
Confidence 358999999999 8999995 999999999999884 33332 246889999999999999999999999999
Q ss_pred HHHHHHHHh---------ccc---------CCCCe-----eE-------------EEEEEecCCCHHHHHHHHH
Q psy16850 124 ANDSTLFTL---------GKM---------IPYFT-----EL-------------IYFYRFLANTTDIIKEASK 161 (174)
Q Consensus 124 aN~~~i~aL---------~~~---------~~g~~-----~s-------------~~~~~f~HNd~~~Le~~L~ 161 (174)
||.++|... .++ ..|.. ++ ..+..|+|||+++||+++.
T Consensus 104 A~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 177 (397)
T TIGR03246 104 ANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYNDLAAAKALIS 177 (397)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCCCCHHHHHHHhc
Confidence 999999976 121 01110 00 1356899999999999985
No 27
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=99.31 E-value=2e-11 Score=106.88 Aligned_cols=130 Identities=14% Similarity=0.038 Sum_probs=94.6
Q ss_pred HHhCCCCceeeecccccCCCCceeeecCCeeEEEeccCcccCCCC---CccchHHHHHHHHHcCCCccccccccCCchHH
Q psy16850 23 KRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSC---HPKVKSAVREALEKFGTGAGGTRNISGNSLFH 99 (174)
Q Consensus 23 ~~~g~~r~~~~~~~~~~~~~~~~~~~~~g~~~inf~SndYLGL~~---~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~ 99 (174)
..++.++....+.+..+.+ .+..+|+++|+|+| +|++++. ||+|.+++.+.+++++.++..+ .++.+
T Consensus 16 ~~~~~~~~~~~~~~~~G~~----~~d~~g~~~lD~~~-~~~~~~~Gh~~~~i~~a~~~~~~~~~~~~~~~-----~~~~~ 85 (401)
T PRK00854 16 GAHNYKPLDVVLTRGEGVW----VWDTDGNRYLDCLS-AYSAVNQGHCHPKILAAMVEQAGRLTLTSRAF-----RNDQL 85 (401)
T ss_pred hhcccCCCCceEEeeeeCE----EEECCCCEEEEcCc-chhhccCCCCCHHHHHHHHHHHhhcccccccc-----CCHHH
Confidence 3455555444444433221 22358999999866 4998886 9999999999999987654322 24789
Q ss_pred HHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhc-----------cc---------CCCCe------------------e
Q psy16850 100 EKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLG-----------KM---------IPYFT------------------E 141 (174)
Q Consensus 100 ~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~-----------~~---------~~g~~------------------~ 141 (174)
.+||++|++++|.+.+++++||+.||.++|.++. +. ..|.. .
T Consensus 86 ~~l~~~l~~~~~~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~ 165 (401)
T PRK00854 86 APLYEELAALTGSHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPF 165 (401)
T ss_pred HHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCC
Confidence 9999999999999999999999999999999883 10 01110 0
Q ss_pred EEEEEEecCCCHHHHHHHHHH
Q psy16850 142 LIYFYRFLANTTDIIKEASKE 162 (174)
Q Consensus 142 s~~~~~f~HNd~~~Le~~L~~ 162 (174)
...+..|+|||+++||+.+..
T Consensus 166 ~~~~~~~~~~d~~~le~~i~~ 186 (401)
T PRK00854 166 TPGFRVVPFGDAEALEAAITP 186 (401)
T ss_pred CCCeEEeCCCCHHHHHHHhCC
Confidence 024578899999999998853
No 28
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=99.26 E-value=4.9e-11 Score=103.92 Aligned_cols=97 Identities=16% Similarity=0.077 Sum_probs=82.3
Q ss_pred CCCCCccchHHHHHHHHHcCCCccccccccCCc-----hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCC
Q psy16850 64 GMSCHPKVKSAVREALEKFGTGAGGTRNISGNS-----LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPY 138 (174)
Q Consensus 64 GL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~-----~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g 138 (174)
-|.....+++++++++++||+|+++||++.|+. +.+.++++.||+|+|.+.++++++|+.+|.+++.+|.+ +|
T Consensus 13 ~~~~~g~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~lA~~~g~~~~~i~~g~~~a~~~~~~~l~~--~g 90 (370)
T TIGR02539 13 PLQRGGVLTEAARKALVEFGDGYSVCDFCGGRLDQITKPPIHDFLEDLAEFLGMDEARVTHGAREGKFAVMHALCK--EG 90 (370)
T ss_pred hhhhCCCCcHHHHHHHHHHhhccccccccccccccccchHHHHHHHHHHHHhCCCceEEECChHHHHHHHHHHhhC--CC
Confidence 355577899999999999999999999998877 36667777799999999999999999999999999975 33
Q ss_pred CeeE-----------------EEEEEecCC-------CHHHHHHHHHH
Q psy16850 139 FTEL-----------------IYFYRFLAN-------TTDIIKEASKE 162 (174)
Q Consensus 139 ~~~s-----------------~~~~~f~HN-------d~~~Le~~L~~ 162 (174)
+.+. +.++.|+|| |+++|++.|++
T Consensus 91 d~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~ 138 (370)
T TIGR02539 91 DWVVLDGLAHYTSYVAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEE 138 (370)
T ss_pred CEEEECCcccHHHHHHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHH
Confidence 3221 478899998 99999999975
No 29
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=99.24 E-value=3.5e-11 Score=109.38 Aligned_cols=106 Identities=16% Similarity=0.171 Sum_probs=86.7
Q ss_pred ccCcccCCCCCccchHHHHHHH-HHcCCCccccccccCCchHHHHHHH-----HHHHHhCCCcEEEe----cchhHHHHH
Q psy16850 58 CSNDYLGMSCHPKVKSAVREAL-EKFGTGAGGTRNISGNSLFHEKLEE-----DVARLHQKEAGLVF----TSCYVANDS 127 (174)
Q Consensus 58 ~SndYLGL~~~p~v~~a~~~al-~~~G~gs~~Sr~~~G~~~~~~~LE~-----~lA~~~g~e~al~f----~sGy~aN~~ 127 (174)
+|-||. +|.+++++..++ .+||.|+.|+|.++|+. .|++||+ .++.|.+.+++++| +|||+||++
T Consensus 41 asen~~----s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~-~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~a 115 (475)
T PLN03226 41 ASENFT----SRAVMEALGSCLTNKYSEGLPGARYYGGNE-YIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFA 115 (475)
T ss_pred cCCccC----CHHHHHHHhhHHhccccCCCCCCcCcCCCh-hHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHH
Confidence 677776 677999999999 99999999999999987 9999998 88888888888888 999999999
Q ss_pred HHHHhccc--------------------CCCCeeE-E----EEEEecCC------CHHHHHHHHHHhccccc
Q psy16850 128 TLFTLGKM--------------------IPYFTEL-I----YFYRFLAN------TTDIIKEASKELQEDMI 168 (174)
Q Consensus 128 ~i~aL~~~--------------------~~g~~~s-~----~~~~f~HN------d~~~Le~~L~~~~~~~~ 168 (174)
++.+|++. .+|++++ + .+.+|+|| |+++||+++++..+..|
T Consensus 116 v~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~~pklI 187 (475)
T PLN03226 116 VYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLI 187 (475)
T ss_pred HHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhcCCeEE
Confidence 99999872 1122222 1 23489999 99999999987655433
No 30
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=99.16 E-value=2.2e-10 Score=100.87 Aligned_cols=109 Identities=18% Similarity=0.120 Sum_probs=85.7
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHH
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVA 124 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~a 124 (174)
..+|+++|||+|+ +|||. .||+|.+++.+.+++++.. ..+ ..++.+.+|+++|+++++.+.+++++||+.|
T Consensus 36 d~dG~~~iD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~----~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~sGseA 109 (403)
T PRK05093 36 DQQGKEYIDFAGGIAVTALGH-CHPALVKALKEQGEKLWHI----SNV-FTNEPALRLAKKLIDATFAERVFFANSGAEA 109 (403)
T ss_pred eCCCCEEEEcCcCHHhccCCC-CCHHHHHHHHHHHHhcCcc----cCc-cCCHHHHHHHHHHHhhCCCCEEEEeCchHHH
Confidence 4789999999995 99999 8999999999999875421 123 3567789999999999998999999999999
Q ss_pred HHHHHHHh---------ccc---------CCCCe-----------------eE-EEEEEecCCCHHHHHHHHHH
Q psy16850 125 NDSTLFTL---------GKM---------IPYFT-----------------EL-IYFYRFLANTTDIIKEASKE 162 (174)
Q Consensus 125 N~~~i~aL---------~~~---------~~g~~-----------------~s-~~~~~f~HNd~~~Le~~L~~ 162 (174)
|.+.+... .+. ..|.. .. ..+..|+|||+++||+.+..
T Consensus 110 ~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~ 183 (403)
T PRK05093 110 NEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFNDLAAVKAVIDD 183 (403)
T ss_pred HHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCCCCHHHHHHHhcC
Confidence 99999964 111 11111 11 24678999999999998853
No 31
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=99.14 E-value=2.6e-10 Score=99.35 Aligned_cols=109 Identities=17% Similarity=0.058 Sum_probs=86.2
Q ss_pred cCCeeEEEecc-CcccCCC-CCccchHHHHHHHHHcCCCcccccccc--CCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850 49 DSEKEVTVYCS-NDYLGMS-CHPKVKSAVREALEKFGTGAGGTRNIS--GNSLFHEKLEEDVARLHQ--KEAGLVFTSCY 122 (174)
Q Consensus 49 ~~g~~~inf~S-ndYLGL~-~~p~v~~a~~~al~~~G~gs~~Sr~~~--G~~~~~~~LE~~lA~~~g--~e~al~f~sGy 122 (174)
.+|+++|||+| |+|++|. .||+|++++.+++++. ++... |..+.+.+|++.|++++| .+.+++++||+
T Consensus 33 ~dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgs 106 (413)
T cd00610 33 VDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKL------THFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGT 106 (413)
T ss_pred CCCCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhC------cCccCcccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHH
Confidence 58999999999 6788887 7999999999998653 23333 368999999999999999 88999999999
Q ss_pred HHHHHHHHHhcc---c------CCCCee--------E-------------EEEEEecCC-----------CHHHHHHHHH
Q psy16850 123 VANDSTLFTLGK---M------IPYFTE--------L-------------IYFYRFLAN-----------TTDIIKEASK 161 (174)
Q Consensus 123 ~aN~~~i~aL~~---~------~~g~~~--------s-------------~~~~~f~HN-----------d~~~Le~~L~ 161 (174)
.||.+++.++.. . .++.|- + ..+..++|| |+++|++.++
T Consensus 107 ea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 186 (413)
T cd00610 107 EAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALE 186 (413)
T ss_pred HHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHh
Confidence 999999997732 1 011111 0 136789999 9999999998
Q ss_pred Hh
Q psy16850 162 EL 163 (174)
Q Consensus 162 ~~ 163 (174)
+.
T Consensus 187 ~~ 188 (413)
T cd00610 187 EH 188 (413)
T ss_pred cC
Confidence 74
No 32
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=99.13 E-value=3.8e-10 Score=97.46 Aligned_cols=78 Identities=24% Similarity=0.227 Sum_probs=68.5
Q ss_pred cCCeeEEEecc---CcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHH
Q psy16850 49 DSEKEVTVYCS---NDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN 125 (174)
Q Consensus 49 ~~g~~~inf~S---ndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN 125 (174)
.+|+++|||+| |+|||+ .+|.|.+++.+++++++.. ++. +..+.+.+||++|++++|.+.+++++||+.||
T Consensus 24 ~~g~~~id~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~---~~~--~~~~~~~~l~~~la~~~g~~~~~~~~sg~~a~ 97 (379)
T TIGR00707 24 VNGKEYLDFVAGIAVNSLGH-AHPKLVEALKEQLEKLVHV---SNL--YYTEPQEELAEKLVEHSGADRVFFCNSGAEAN 97 (379)
T ss_pred CCCCEEEEcCcchhhccCCC-CCHHHHHHHHHHHhhcccc---ccc--cCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHH
Confidence 57999999999 899998 6899999999999987642 233 24688999999999999999999999999999
Q ss_pred HHHHHHh
Q psy16850 126 DSTLFTL 132 (174)
Q Consensus 126 ~~~i~aL 132 (174)
..++.++
T Consensus 98 ~~a~~~~ 104 (379)
T TIGR00707 98 EAALKLA 104 (379)
T ss_pred HHHHHHH
Confidence 9999876
No 33
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=99.03 E-value=1.8e-09 Score=95.55 Aligned_cols=107 Identities=18% Similarity=0.093 Sum_probs=84.2
Q ss_pred ecCCeeEEEecc---CcccCCCCCccchHHHHHHHHHcC-CCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhH
Q psy16850 48 TDSEKEVTVYCS---NDYLGMSCHPKVKSAVREALEKFG-TGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYV 123 (174)
Q Consensus 48 ~~~g~~~inf~S---ndYLGL~~~p~v~~a~~~al~~~G-~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~ 123 (174)
..+|+++|||.| |+|||.+ ||+|.+|+.+.++++. ++. . ..++.+.+|+++|+++++.+.+++++||+.
T Consensus 35 d~dG~~~lD~~~g~~~~~lGh~-~p~v~~A~~~~~~~~~~~~~---~---~~~~~~~~la~~l~~~~~~~~v~~~~sGse 107 (406)
T PRK12381 35 DQQGKEYIDFAGGIAVNALGHA-HPALREALNEQASKFWHTGN---G---YTNEPVLRLAKKLIDATFADRVFFCNSGAE 107 (406)
T ss_pred eCCCCEEEEcCcCHhhccCCCC-CHHHHHHHHHHHhhcccccC---c---cCCHHHHHHHHHHHhhCCCCeEEEcCCcHH
Confidence 468999999999 7999999 9999999999998753 321 1 246789999999999999999999999999
Q ss_pred HHHHHHHHhc---------cc---------CCCCe-----eE-------------EEEEEecCCCHHHHHHHHH
Q psy16850 124 ANDSTLFTLG---------KM---------IPYFT-----EL-------------IYFYRFLANTTDIIKEASK 161 (174)
Q Consensus 124 aN~~~i~aL~---------~~---------~~g~~-----~s-------------~~~~~f~HNd~~~Le~~L~ 161 (174)
||.++|...- +. ..|.. ++ ..+..++|||+++||+.+.
T Consensus 108 A~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 181 (406)
T PRK12381 108 ANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALID 181 (406)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhcc
Confidence 9999999742 10 01110 00 1256789999999999885
No 34
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=99.03 E-value=2.6e-09 Score=92.75 Aligned_cols=109 Identities=21% Similarity=0.170 Sum_probs=82.7
Q ss_pred ecCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHH
Q psy16850 48 TDSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVA 124 (174)
Q Consensus 48 ~~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~a 124 (174)
..+|+++|||+||+ |||. .||+|++|+.+++++++.. ++. +..++..+|++.|++..+.+.+++++||+.|
T Consensus 25 d~~G~~~lD~~s~~~~~~lG~-~~p~v~~a~~~~~~~~~~~---~~~--~~~~~~~~la~~l~~~~~~~~~~~~~sG~~a 98 (377)
T PRK02936 25 DNNGKTYLDFTSGIAVCNLGH-CHPTVTKAVQEQLDDIWHV---SNL--FTNSLQEEVASLLAENSAGDLVFFCNSGAEA 98 (377)
T ss_pred eCCCCEEEECCcchhhccCCC-CCHHHHHHHHHHHHhcccc---ccc--cCCHHHHHHHHHHHhcCCCCEEEEeCCcHHH
Confidence 47899999999999 9997 8999999999999886421 222 3467788888888887777889999999999
Q ss_pred HHHHHHHhc---cc---------CCCC-----eeE-------------EEEEEecCCCHHHHHHHHHH
Q psy16850 125 NDSTLFTLG---KM---------IPYF-----TEL-------------IYFYRFLANTTDIIKEASKE 162 (174)
Q Consensus 125 N~~~i~aL~---~~---------~~g~-----~~s-------------~~~~~f~HNd~~~Le~~L~~ 162 (174)
|.+++.... +. ..|. .++ ..+..++|||+++||+.+..
T Consensus 99 ~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 166 (377)
T PRK02936 99 NEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNE 166 (377)
T ss_pred HHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhccC
Confidence 999998531 21 1111 111 13457899999999998863
No 35
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=98.98 E-value=3.2e-09 Score=92.75 Aligned_cols=78 Identities=19% Similarity=0.171 Sum_probs=68.1
Q ss_pred ecCCeeEEEecc---CcccCCCCCccchHHHHHHHHHcC-CCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhH
Q psy16850 48 TDSEKEVTVYCS---NDYLGMSCHPKVKSAVREALEKFG-TGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYV 123 (174)
Q Consensus 48 ~~~g~~~inf~S---ndYLGL~~~p~v~~a~~~al~~~G-~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~ 123 (174)
..+|+++|||+| |+|||. .||+|.+|+.+.+++.. .+ .. .+++.+.+|+++|+++.+.+.+++++||+.
T Consensus 27 d~dG~~~lD~~~g~~~~~lGh-~~p~v~~a~~~~~~~~~~~~----~~--~~~~~~~~la~~l~~~~~~~~v~~~~sGse 99 (389)
T PRK01278 27 DEDGERYLDFASGIAVNSLGH-AHPHLVEALKEQAEKLWHVS----NL--YRIPEQERLAERLVENSFADKVFFTNSGAE 99 (389)
T ss_pred ECCCCEEEECCccHhhccCCC-CCHHHHHHHHHHHHhcCccc----cc--cCChHHHHHHHHHHhhCCCCEEEEcCCcHH
Confidence 478999999999 789999 79999999999998733 22 12 367899999999999998899999999999
Q ss_pred HHHHHHHHh
Q psy16850 124 ANDSTLFTL 132 (174)
Q Consensus 124 aN~~~i~aL 132 (174)
||..+|.++
T Consensus 100 A~~~al~~a 108 (389)
T PRK01278 100 AVECAIKTA 108 (389)
T ss_pred HHHHHHHHH
Confidence 999999877
No 36
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=98.97 E-value=1.9e-09 Score=94.20 Aligned_cols=78 Identities=21% Similarity=0.219 Sum_probs=68.6
Q ss_pred cCCeeEEEeccCcccCCC---CCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHH
Q psy16850 49 DSEKEVTVYCSNDYLGMS---CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN 125 (174)
Q Consensus 49 ~~g~~~inf~SndYLGL~---~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN 125 (174)
.+|+++|+|+| +|+++. .||+|++++.+.+++++.++ +.+ ..+.+.++|+.|+++++.+.+++++||+.||
T Consensus 28 ~dg~~~lD~~~-~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~---~~~--~~~~~~~~~~~l~~~~~~~~~~~~~SGs~A~ 101 (400)
T PTZ00125 28 VEGKKYYDFLS-AYSAVNQGHCHPKILAALINQAQKLTLTS---RAF--YNDVLGLAEKYITDLFGYDKVLPMNSGAEAG 101 (400)
T ss_pred CCCCEEEEccc-CHhhccCCcCCHHHHHHHHHHHHhccccc---ccc--cCHHHHHHHHHHHhCCCCCEEEEeCCcHHHH
Confidence 58999999999 499988 69999999999998887543 333 3579999999999999999999999999999
Q ss_pred HHHHHHh
Q psy16850 126 DSTLFTL 132 (174)
Q Consensus 126 ~~~i~aL 132 (174)
.++|..+
T Consensus 102 e~al~~~ 108 (400)
T PTZ00125 102 ETALKFA 108 (400)
T ss_pred HHHHHHH
Confidence 9999976
No 37
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=98.82 E-value=1e-08 Score=87.80 Aligned_cols=112 Identities=24% Similarity=0.149 Sum_probs=89.4
Q ss_pred eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--------CCcEEEecchhHH
Q psy16850 53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--------KEAGLVFTSCYVA 124 (174)
Q Consensus 53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--------~e~al~f~sGy~a 124 (174)
++|||++|+|+++..+|.+.++..++.+ +....++...++...-+.+|++.||+|++ .+..+++++|..+
T Consensus 2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~ 79 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQNPPPPAAIKAAIR--GAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQA 79 (363)
T ss_dssp TEEESSSSSTSSTTSSHHHHHHHHHHHH--HHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHH
T ss_pred CEEEEECCCCCCcccccchHHHHHHHHH--HhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEeccccc
Confidence 4899999999999999877777776665 55566667778888889999999999999 5558999999999
Q ss_pred HHHHHHHhcccCCCCeeE-----------------EEEEEec-------CCCHHHHHHHHHHhccc
Q psy16850 125 NDSTLFTLGKMIPYFTEL-----------------IYFYRFL-------ANTTDIIKEASKELQED 166 (174)
Q Consensus 125 N~~~i~aL~~~~~g~~~s-----------------~~~~~f~-------HNd~~~Le~~L~~~~~~ 166 (174)
++.++..+....+|+... +.++.|+ |+|+++|++.+++..+.
T Consensus 80 ~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 145 (363)
T PF00155_consen 80 ALFLLLRLLKINPGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSK 145 (363)
T ss_dssp HHHHHHHHHHSSTTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTT
T ss_pred chhhhhhcccccccccceecCCccccccccccccCceeeecccccccccccccccccccccccccc
Confidence 999988777322343332 3567777 99999999999997554
No 38
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=98.81 E-value=4.6e-08 Score=85.63 Aligned_cols=108 Identities=19% Similarity=0.047 Sum_probs=83.1
Q ss_pred ecCCeeEEEecc---CcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC---CcEEEecch
Q psy16850 48 TDSEKEVTVYCS---NDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK---EAGLVFTSC 121 (174)
Q Consensus 48 ~~~g~~~inf~S---ndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~---e~al~f~sG 121 (174)
..+|+++|+|+| ++|||. .||+|.+++.+++++++..+ .+ + ..+...+|++.|+++++. +.+++++||
T Consensus 39 d~dg~~~lD~~s~~~~~~lG~-~~p~v~~ai~~~~~~~~~~~--~~--~-~~~~~~~la~~l~~~~~~~~~~~v~~~~sg 112 (398)
T PRK03244 39 DVDGKEYLDLLGGIAVNALGH-AHPAVVEAVTRQLATLGHVS--NL--F-ATEPQIALAERLVELLGAPEGGRVFFCNSG 112 (398)
T ss_pred ECCCCEEEECCcCHhhccCCC-CCHHHHHHHHHHHHhccCcc--Cc--c-CCHHHHHHHHHHHHhCCCCCCCEEEEeCch
Confidence 368999999999 899998 59999999999999987542 22 2 356778999999999985 478899999
Q ss_pred hHHHHHHHHHhccc-----------CCCCe-----e-------------EEEEEEecCCCHHHHHHHHH
Q psy16850 122 YVANDSTLFTLGKM-----------IPYFT-----E-------------LIYFYRFLANTTDIIKEASK 161 (174)
Q Consensus 122 y~aN~~~i~aL~~~-----------~~g~~-----~-------------s~~~~~f~HNd~~~Le~~L~ 161 (174)
..||.+++.++... ..|.. + ...+..++|||+++||+.+.
T Consensus 113 sea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 181 (398)
T PRK03244 113 AEANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAVD 181 (398)
T ss_pred HHHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhhc
Confidence 99999999855421 01110 0 01356788999999999884
No 39
>PLN02624 ornithine-delta-aminotransferase
Probab=98.78 E-value=1.6e-07 Score=85.21 Aligned_cols=77 Identities=16% Similarity=0.155 Sum_probs=67.2
Q ss_pred ecCCeeEEEeccCcccCCCC---CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHH
Q psy16850 48 TDSEKEVTVYCSNDYLGMSC---HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVA 124 (174)
Q Consensus 48 ~~~g~~~inf~SndYLGL~~---~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~a 124 (174)
..+|+++|+|+|+ |.++.. ||+|.+|+.+.+++++.++. +. .++.+.+|+++|+++++.+.+++++||+.|
T Consensus 71 d~dG~~ylD~~sg-~~~~~~Gh~~p~v~~ai~~ql~~~~~~~~--~~---~~~~~~~la~~L~~~~~~~~~~f~~SGseA 144 (474)
T PLN02624 71 DPEGKKYLDFLSA-YSAVNQGHCHPKIIKALTEQAEKLTLSSR--AF---YNDKFPEFAEYLTSMFGYDMVLPMNTGAEG 144 (474)
T ss_pred ECCCCEEEEcccc-hhcccCCCCCHHHHHHHHHHHHhcCCccc--cc---CCHHHHHHHHHHHhhcCCCeEEEeCChHHH
Confidence 4689999999995 888876 99999999999999875542 33 358899999999999999999999999999
Q ss_pred HHHHHH
Q psy16850 125 NDSTLF 130 (174)
Q Consensus 125 N~~~i~ 130 (174)
|-+.|.
T Consensus 145 ~e~Alk 150 (474)
T PLN02624 145 VETAIK 150 (474)
T ss_pred HHHHHH
Confidence 999996
No 40
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=98.71 E-value=1.7e-07 Score=82.38 Aligned_cols=80 Identities=19% Similarity=0.153 Sum_probs=64.9
Q ss_pred ecCCeeEEEeccCcc-cCCC-CCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHH
Q psy16850 48 TDSEKEVTVYCSNDY-LGMS-CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN 125 (174)
Q Consensus 48 ~~~g~~~inf~SndY-LGL~-~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN 125 (174)
..+|+++|+|.|.-. +.|. .||+|.+|+.+.+++++.++ +.+ .++.+.+||++|+++.+.+.+++++||+.||
T Consensus 36 d~~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~---~~~--~~~~~~~l~~~l~~~~~~~~~~~~~SGseA~ 110 (396)
T PRK04073 36 DPEGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTS---RAF--HSDQLGPWYEKVAKLTGKDMVLPMNTGAEAV 110 (396)
T ss_pred ECCCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhccccc---ccc--CCHHHHHHHHHHHhcCCCCeEEEcCChHHHH
Confidence 367889999876622 1233 39999999999999987643 222 5688999999999999999999999999999
Q ss_pred HHHHHHh
Q psy16850 126 DSTLFTL 132 (174)
Q Consensus 126 ~~~i~aL 132 (174)
.++|...
T Consensus 111 e~Alk~a 117 (396)
T PRK04073 111 ETAIKAA 117 (396)
T ss_pred HHHHHHH
Confidence 9999876
No 41
>PRK12403 putative aminotransferase; Provisional
Probab=98.55 E-value=3.5e-07 Score=82.77 Aligned_cols=82 Identities=16% Similarity=0.038 Sum_probs=68.4
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY 122 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy 122 (174)
..+|+++|||.|. .-||. .||+|.+|+.+.+++++.+ ++...+.++.+.+|+++|+++++ .+.+++++||+
T Consensus 50 D~dG~~ylD~~~g~~~~~lGh-~hp~v~~A~~~q~~~~~~~---~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGs 125 (460)
T PRK12403 50 DNDGKRYLDGMSGLWCTNLGY-GRKDLAAAAARQMEQLPYY---NMFFHTTHPAVIELSELLFSLLPGHYSHAIYTNSGS 125 (460)
T ss_pred eCCCCEEEECchhHHhhcCCC-CCHHHHHHHHHHHHhCCCe---ecccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcH
Confidence 4689999996432 23999 5799999999999997754 34556788999999999999997 57899999999
Q ss_pred HHHHHHHHHhc
Q psy16850 123 VANDSTLFTLG 133 (174)
Q Consensus 123 ~aN~~~i~aL~ 133 (174)
.||-+.|....
T Consensus 126 eA~e~AiklAr 136 (460)
T PRK12403 126 EANEVLIRTVR 136 (460)
T ss_pred HHHHHHHHHHH
Confidence 99999998763
No 42
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=98.54 E-value=7.7e-07 Score=77.41 Aligned_cols=80 Identities=24% Similarity=0.263 Sum_probs=67.9
Q ss_pred ecCCeeEEEecc---CcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHH
Q psy16850 48 TDSEKEVTVYCS---NDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVA 124 (174)
Q Consensus 48 ~~~g~~~inf~S---ndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~a 124 (174)
..+|+++|+|+| +++||. .||+|.+++.+.+++.... +. .+..+...+|++.|+++.|.+.+++++||..|
T Consensus 35 d~dg~~~iD~~~g~~~~~lG~-~~p~v~~a~~~~~~~~~~~---~~--~~~~~~~~~la~~l~~~~~~~~v~~~~gg~eA 108 (396)
T PRK02627 35 DDDGKEYLDFLAGIAVNNLGH-CHPKLVEAIQEQAAKLIHT---SN--LYYIEPQEELAEKLVELSGMDKVFFCNSGAEA 108 (396)
T ss_pred eCCCCEEEECCccHHhccCCC-CCHHHHHHHHHHHhhcccc---cc--ccCCHHHHHHHHHHHhhcCCCEEEECCCcHHH
Confidence 368999999998 899999 5899999999998875321 22 23578999999999999999999999999999
Q ss_pred HHHHHHHhc
Q psy16850 125 NDSTLFTLG 133 (174)
Q Consensus 125 N~~~i~aL~ 133 (174)
|..++.++.
T Consensus 109 ~~~al~~a~ 117 (396)
T PRK02627 109 NEAAIKLAR 117 (396)
T ss_pred HHHHHHHHH
Confidence 999998654
No 43
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=98.54 E-value=5e-07 Score=78.69 Aligned_cols=76 Identities=18% Similarity=0.260 Sum_probs=61.4
Q ss_pred ecCCeeEEEeccC-cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh-CCCc--EEEecchhH
Q psy16850 48 TDSEKEVTVYCSN-DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH-QKEA--GLVFTSCYV 123 (174)
Q Consensus 48 ~~~g~~~inf~Sn-dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~-g~e~--al~f~sGy~ 123 (174)
..+|+++|||.|+ .|++|.+||+|++|+.+++++++... ...+.++++++|+.+ +.++ +++++||+.
T Consensus 25 d~dg~~~lD~~s~~~~~~lG~~p~v~~a~~~~~~~~~~~~---------~~~~~~~~~~la~~l~~~~~~~~~~~~SGse 95 (375)
T PRK04260 25 DTDGKKYLDFSSGIGVTNLGFHPQVQQALQKQAGLIWHSP---------NLYLNSLQEEVAQKLIGDKDYLAFFCNSGAE 95 (375)
T ss_pred eCCCCEEEECCCCcccccCCCCHHHHHHHHHHHHhcCccc---------CccCCHHHHHHHHHHhcCcCCEEEEcCccHH
Confidence 3689999999998 69999999999999999998865321 124677888999876 3333 678899999
Q ss_pred HHHHHHHHh
Q psy16850 124 ANDSTLFTL 132 (174)
Q Consensus 124 aN~~~i~aL 132 (174)
||.++|...
T Consensus 96 A~~~Al~~a 104 (375)
T PRK04260 96 ANEAAIKIA 104 (375)
T ss_pred HHHHHHHHH
Confidence 999999876
No 44
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=98.53 E-value=8.2e-07 Score=77.96 Aligned_cols=91 Identities=16% Similarity=0.101 Sum_probs=72.6
Q ss_pred chHHHHHHHHHcCCCcccc-----ccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---
Q psy16850 71 VKSAVREALEKFGTGAGGT-----RNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL--- 142 (174)
Q Consensus 71 v~~a~~~al~~~G~gs~~S-----r~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s--- 142 (174)
+.+++.+++.+|+.+.++| +...+..+.++++|+.+|+|+|.+.++++++|+.+|..++.++.+ +|.++.
T Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~~~~~~~g~t~a~~~al~~l~~--~gd~Vlv~~ 109 (387)
T PRK09331 32 LTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMDEARVTHGAREGKFAVMHSLCK--KGDYVVLDG 109 (387)
T ss_pred CCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhcC--CCCEEEECC
Confidence 5667777777787665544 666777889999999999999999999999999999999999975 343322
Q ss_pred --------------EEEEEecC-------CCHHHHHHHHHHh
Q psy16850 143 --------------IYFYRFLA-------NTTDIIKEASKEL 163 (174)
Q Consensus 143 --------------~~~~~f~H-------Nd~~~Le~~L~~~ 163 (174)
+.++.+++ .|+++|++.|++.
T Consensus 110 ~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 151 (387)
T PRK09331 110 LAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEV 151 (387)
T ss_pred CchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHh
Confidence 36667766 6899999999864
No 45
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=98.51 E-value=2.3e-07 Score=82.31 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=58.6
Q ss_pred ecCCeeEEEecc---CcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC----CCcEEEecc
Q psy16850 48 TDSEKEVTVYCS---NDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ----KEAGLVFTS 120 (174)
Q Consensus 48 ~~~g~~~inf~S---ndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g----~e~al~f~s 120 (174)
..+|+++|+|+| |+|||.+ ||+|.+|+.+.+++...++ ...+.++|.+||++++ .+.+++++|
T Consensus 32 d~dG~~~lD~~sg~~~~~lGh~-~p~v~~a~~~q~~~~~~~~---------~~~~~~~~~~la~~l~~~~~~~~v~f~~S 101 (395)
T PRK03715 32 DHNGKRYLDFIQGWAVNCLGHC-NPGMVEALAAQAEKLINPS---------PAFYNEPMAKLAGLLTQHSCFDKVFFANS 101 (395)
T ss_pred ECCCCEEEECCcChhhccCCCC-CHHHHHHHHHHHHhccccc---------ccccCHHHHHHHHHHhhccCCCEEEEeCC
Confidence 358999999997 9999999 6999999999887644321 1223445555555554 568999999
Q ss_pred hhHHHHHHHHHhc
Q psy16850 121 CYVANDSTLFTLG 133 (174)
Q Consensus 121 Gy~aN~~~i~aL~ 133 (174)
|+.||.++|....
T Consensus 102 GseA~e~Aik~ar 114 (395)
T PRK03715 102 GAEANEGAIKLAR 114 (395)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999999874
No 46
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=98.50 E-value=5.4e-07 Score=80.48 Aligned_cols=79 Identities=27% Similarity=0.260 Sum_probs=65.5
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh-CCCcEEEe-cchh
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH-QKEAGLVF-TSCY 122 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~-g~e~al~f-~sGy 122 (174)
..+|+++|||+|+ .+|| ..||+|.+|+.+.+++++.++++++ .++.+.+|+++|++++ +..+.++| +||+
T Consensus 39 d~dG~~ylD~~~g~~~~~lG-h~~p~v~~a~~~q~~~~~~~~~~~~----~~~~~~~la~~L~~~~~~~~~~v~f~~SGs 113 (433)
T PRK08117 39 GVDGKEYLDFTSGIAVANVG-HRHPKVVQAIKEQADKLMHGPSGVI----YYESILKLAEELAEITPGGLDCFFFSNSGA 113 (433)
T ss_pred eCCCCEEEECCcchhhccCC-CCCHHHHHHHHHHHHhccCcccccc----CCHHHHHHHHHHHHhCCCCCCEEEEeCcHH
Confidence 4789999999876 5688 5699999999999999877665543 4688999999999999 44456666 8999
Q ss_pred HHHHHHHHH
Q psy16850 123 VANDSTLFT 131 (174)
Q Consensus 123 ~aN~~~i~a 131 (174)
.||.+.|..
T Consensus 114 eA~e~Alkl 122 (433)
T PRK08117 114 EAIEGALKL 122 (433)
T ss_pred HHHHHHHHH
Confidence 999999985
No 47
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=98.49 E-value=7.7e-07 Score=77.66 Aligned_cols=110 Identities=21% Similarity=0.309 Sum_probs=80.5
Q ss_pred eeEEEeccCcccCCCCCccchHHHHHHH-HHcCCCccccccccCCchHHHHHHH----HHHHHhCCCcE-EEecchhHHH
Q psy16850 52 KEVTVYCSNDYLGMSCHPKVKSAVREAL-EKFGTGAGGTRNISGNSLFHEKLEE----DVARLHQKEAG-LVFTSCYVAN 125 (174)
Q Consensus 52 ~~~inf~SndYLGL~~~p~v~~a~~~al-~~~G~gs~~Sr~~~G~~~~~~~LE~----~lA~~~g~e~a-l~f~sGy~aN 125 (174)
+.+..++|++|+ +|++++++.+.+ .+|+.|..++|...|.. ...++|+ .+++++|.+.+ ++++||+.|+
T Consensus 20 ~~~~~~~~~~~~----~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~-~~~~l~~~~~~~~~~~~g~~~~~v~~~sgt~a~ 94 (402)
T cd00378 20 ETLELIASENFT----SPAVMEAMGSDLTNKYAEGYPGKRYYGGCE-YVDEIEDLAIERAKKLFGAEYANVQPHSGSQAN 94 (402)
T ss_pred hCeeeeccCCcC----CHHHHHHhcccccccccCCCCCCcccCCch-HHHHHHHHHHHHHHHHhCCCceeeecCCcHHHH
Confidence 345567899998 999999998775 78999999999987754 3344443 56799999877 4557899999
Q ss_pred HHHHHHhcccCCCCeeE------------------------EEEEEecCC------CHHHHHHHHHHhccccc
Q psy16850 126 DSTLFTLGKMIPYFTEL------------------------IYFYRFLAN------TTDIIKEASKELQEDMI 168 (174)
Q Consensus 126 ~~~i~aL~~~~~g~~~s------------------------~~~~~f~HN------d~~~Le~~L~~~~~~~~ 168 (174)
..++.+|.+ +|.+.. .....++++ |+++|++.+.+..+..|
T Consensus 95 ~~~l~~l~~--~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v 165 (402)
T cd00378 95 LAVYFALLE--PGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLI 165 (402)
T ss_pred HHHHHHhcC--CCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEE
Confidence 999999976 343321 123456676 89999999875444433
No 48
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=98.48 E-value=2.6e-06 Score=76.03 Aligned_cols=107 Identities=23% Similarity=0.129 Sum_probs=81.7
Q ss_pred cCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh-CCCcEEEecchhHH
Q psy16850 49 DSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH-QKEAGLVFTSCYVA 124 (174)
Q Consensus 49 ~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~-g~e~al~f~sGy~a 124 (174)
.+|+++|||+|+ .+||. .||+|.+++.+.+++ +.+. ....+...+|-++|++.+ +.+.+++++||+.|
T Consensus 47 ~dG~~~lD~~~g~~~~~lGh-~~p~i~~a~~~~~~~-~~~~------~~~~~~~~~la~~L~~~~~~~~~v~~~~sGseA 118 (426)
T PRK00062 47 VDGNEYIDYVGSWGPMILGH-AHPEVVEAVIEAAEK-GLSF------GAPTELEVELAELVIELVPSIEMVRMVNSGTEA 118 (426)
T ss_pred CCCCEEEEcccchhhhhcCC-CCHHHHHHHHHHHHh-CCcC------CCCCHHHHHHHHHHHHhCCCCCEEEEecCHHHH
Confidence 689999999997 79999 799999999999987 4321 224567778888888876 57789999999999
Q ss_pred HHHHHHHhcc---c---------CCCCe-----------------eE--------EEEEEecCCCHHHHHHHHHHh
Q psy16850 125 NDSTLFTLGK---M---------IPYFT-----------------EL--------IYFYRFLANTTDIIKEASKEL 163 (174)
Q Consensus 125 N~~~i~aL~~---~---------~~g~~-----------------~s--------~~~~~f~HNd~~~Le~~L~~~ 163 (174)
|.++|..... . ..|.. .. ..+.+|+|||+++||+++.+.
T Consensus 119 ~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~ 194 (426)
T PRK00062 119 TMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEY 194 (426)
T ss_pred HHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHHhC
Confidence 9999987331 1 11211 00 135789999999999999763
No 49
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=98.44 E-value=7.4e-07 Score=81.78 Aligned_cols=81 Identities=16% Similarity=0.109 Sum_probs=68.2
Q ss_pred ecCCeeEEEecc---CcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC-C--CcEEEecch
Q psy16850 48 TDSEKEVTVYCS---NDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ-K--EAGLVFTSC 121 (174)
Q Consensus 48 ~~~g~~~inf~S---ndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g-~--e~al~f~sG 121 (174)
..+|+++|||.| |++|| ..||+|.+|+.+.+++++..++ ...++++++.+|+++|++.+. . +.+.+++||
T Consensus 85 D~dG~~ylD~~sg~~~~~lG-h~hp~v~~Av~~ql~~~~~~~~---~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SG 160 (504)
T PLN02760 85 DINGKKYLDALAGLWCTALG-GSEPRLVAAATEQLNKLPFYHS---FWNRTTKPSLDLAKELLEMFTARKMGKVFFTNSG 160 (504)
T ss_pred ECCCCEEEEcCcCHHhcccC-CCCHHHHHHHHHHHhhccceec---ccccCcHHHHHHHHHHHhhcCCCCCCEEEEeCCh
Confidence 468999999999 89999 8899999999999998765432 345678999999999999853 2 457889999
Q ss_pred hHHHHHHHHHh
Q psy16850 122 YVANDSTLFTL 132 (174)
Q Consensus 122 y~aN~~~i~aL 132 (174)
+.||-+.|...
T Consensus 161 sEA~e~AlKlA 171 (504)
T PLN02760 161 SEANDTQVKLV 171 (504)
T ss_pred HHHHHHHHHHH
Confidence 99999999976
No 50
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=98.39 E-value=3.7e-06 Score=72.70 Aligned_cols=94 Identities=14% Similarity=0.066 Sum_probs=74.1
Q ss_pred CCccchHHHHHHHHHcCCCccccccccCCc-----hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCee
Q psy16850 67 CHPKVKSAVREALEKFGTGAGGTRNISGNS-----LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTE 141 (174)
Q Consensus 67 ~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~-----~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~ 141 (174)
....+.+++.+++.+||.|+++|+...|.. +.+.+||+.+|+++|.+.++++++|..++..++.++.+ +|..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~i~~~~g~t~al~~~l~~~~~--~gd~V 86 (361)
T cd06452 9 RGGRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGMDEARVTPGAREGKFAVMHSLCE--KGDWV 86 (361)
T ss_pred cCCCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhcC--CCCEE
Confidence 355688999999999999999998866544 67999999999999999999999999999999999865 33322
Q ss_pred E-----------------EEEEEec-------CCCHHHHHHHHHH
Q psy16850 142 L-----------------IYFYRFL-------ANTTDIIKEASKE 162 (174)
Q Consensus 142 s-----------------~~~~~f~-------HNd~~~Le~~L~~ 162 (174)
. +.++.++ +-|+++|++.+.+
T Consensus 87 l~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 131 (361)
T cd06452 87 VVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEE 131 (361)
T ss_pred EEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHH
Confidence 1 2333332 4589999998875
No 51
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=98.32 E-value=4.1e-06 Score=70.89 Aligned_cols=95 Identities=22% Similarity=0.142 Sum_probs=72.8
Q ss_pred EeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhccc
Q psy16850 56 VYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKM 135 (174)
Q Consensus 56 nf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~ 135 (174)
+|+|+|++| -+|++++++.+++... ..+|....+++||+.+|+++|.+.++++++|..+|..++.++.+.
T Consensus 1 ~~~~~~~~~--~~~~v~~a~~~~~~~~--------~~~~~~~~~~~l~~~~a~~~g~~~~~~~~~gt~a~~~~~~~l~~~ 70 (338)
T cd06502 1 DFRSDTVTG--PTPEMLEAMAAANVGD--------DVYGEDPTTAKLEARAAELFGKEAALFVPSGTAANQLALAAHTQP 70 (338)
T ss_pred CcccccCCC--CCHHHHHHHHhcccCC--------cccCCCHHHHHHHHHHHHHhCCCeEEEecCchHHHHHHHHHhcCC
Confidence 599999999 5688888887765221 134556789999999999999889999999999999999998762
Q ss_pred CCCCee--------------------EEEEEEecC----CCHHHHHHHHHH
Q psy16850 136 IPYFTE--------------------LIYFYRFLA----NTTDIIKEASKE 162 (174)
Q Consensus 136 ~~g~~~--------------------s~~~~~f~H----Nd~~~Le~~L~~ 162 (174)
|..+ .++++.+++ .|+++|++.+.+
T Consensus 71 --gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~i~~ 119 (338)
T cd06502 71 --GGSVICHETAHIYTDEAGAPEFLSGVKLLPVPGENGKLTPEDLEAAIRP 119 (338)
T ss_pred --CCeEEEecCcceeeecCCcHHHHcCceEEeecCCCCcCCHHHHHHHhhc
Confidence 2211 134556655 678999998875
No 52
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=98.30 E-value=4.1e-06 Score=73.71 Aligned_cols=104 Identities=23% Similarity=0.258 Sum_probs=78.1
Q ss_pred EeccCcccCCCCCccchHHHHHHH-HHcCCCccccccccCCchHHHHHHH----HHHHHhCCCcE-EEecchhHHHHHHH
Q psy16850 56 VYCSNDYLGMSCHPKVKSAVREAL-EKFGTGAGGTRNISGNSLFHEKLEE----DVARLHQKEAG-LVFTSCYVANDSTL 129 (174)
Q Consensus 56 nf~SndYLGL~~~p~v~~a~~~al-~~~G~gs~~Sr~~~G~~~~~~~LE~----~lA~~~g~e~a-l~f~sGy~aN~~~i 129 (174)
.++++||+ +|+|++++.+.+ ..|+.|..+|+...|. ..++++|+ .+|+++|.+.+ ++++||+.|+..++
T Consensus 30 l~~~~n~~----~~~v~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~la~~~g~~~~~i~~~sgt~al~~~l 104 (416)
T PRK00011 30 LIASENFV----SPAVMEAQGSVLTNKYAEGYPGKRYYGGC-EYVDVVEQLAIDRAKELFGAEYANVQPHSGSQANAAVY 104 (416)
T ss_pred eecccCcC----CHHHHHHHhchhhcccccCCCCccccccc-hHHHHHHHHHHHHHHHHhCCCceeeecCCchHHHHHHH
Confidence 45667773 899999987775 5789999999988875 45888888 89999999988 66789999999999
Q ss_pred HHhcccCCCCeeE----------------------EEEEEec------CCCHHHHHHHHHHhccc
Q psy16850 130 FTLGKMIPYFTEL----------------------IYFYRFL------ANTTDIIKEASKELQED 166 (174)
Q Consensus 130 ~aL~~~~~g~~~s----------------------~~~~~f~------HNd~~~Le~~L~~~~~~ 166 (174)
.+|.+ +|++.. +.++.++ +.|+++|++.+++....
T Consensus 105 ~~l~~--~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~k 167 (416)
T PRK00011 105 FALLK--PGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHKPK 167 (416)
T ss_pred HHhcC--CCCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHhcCCC
Confidence 99975 332211 2333333 56899999999764333
No 53
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=98.18 E-value=6.5e-06 Score=74.82 Aligned_cols=98 Identities=18% Similarity=0.039 Sum_probs=68.0
Q ss_pred cCCCC-CccchHHHHHHHHHcCCCccccccccC-CchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhccc-----
Q psy16850 63 LGMSC-HPKVKSAVREALEKFGTGAGGTRNISG-NSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKM----- 135 (174)
Q Consensus 63 LGL~~-~p~v~~a~~~al~~~G~gs~~Sr~~~G-~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~----- 135 (174)
+|-+. ++++++++.++++.|+.-.. .+..| ....+.++|+.||+++|.|+|++|+||+.|+..++.++...
T Consensus 88 lg~s~l~~~vieAv~~~~~~y~~l~~--~l~~g~~g~r~~~le~~lA~l~gae~alvv~sg~aAi~l~l~~l~~GdeVIv 165 (454)
T TIGR00474 88 LGRAPLAEEAIEAVTDAARGYSNLEY--DLETGKRGSRYSHVEGLLCELTGAEDALVVNNNAAAVLLALNTLAKGKEVIV 165 (454)
T ss_pred CCCCCCCHHHHHHHHHHHhcccchhc--cccccccchHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhCCcCEEEE
Confidence 67776 88999999999988762100 00000 12458999999999999999999999999999999887541
Q ss_pred CCCC--------------eeE-EEEEEecCC---CHHHHHHHHHH
Q psy16850 136 IPYF--------------TEL-IYFYRFLAN---TTDIIKEASKE 162 (174)
Q Consensus 136 ~~g~--------------~~s-~~~~~f~HN---d~~~Le~~L~~ 162 (174)
-++. +.+ +.++.+.|+ |++++++.+..
T Consensus 166 s~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~~~~l~dle~aI~~ 210 (454)
T TIGR00474 166 SRGELVEIGGSFRIPDVMEQSGAKLVEVGTTNRTHLKDYEDAITE 210 (454)
T ss_pred CCChhhhhcchhhHHHHHHHcCCEEEEeCCCCCCCHHHHHHhcCc
Confidence 1111 111 567778884 55666666543
No 54
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=98.17 E-value=1.7e-05 Score=69.36 Aligned_cols=73 Identities=23% Similarity=0.122 Sum_probs=58.7
Q ss_pred ccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCee---------------------EEEEE
Q psy16850 88 GTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTE---------------------LIYFY 146 (174)
Q Consensus 88 ~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~---------------------s~~~~ 146 (174)
+........+.+.+||+.||+++|.++|++|+||+.||..++.++.+ +|++. .+.+.
T Consensus 31 ~~~y~r~~~p~~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l~~--~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~ 108 (369)
T cd00614 31 GYIYSRIGNPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLALLK--AGDHVVASDDLYGGTYRLFERLLPKLGIEVT 108 (369)
T ss_pred CceeECCCChhHHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHcC--CCCEEEECCCCcchHHHHHHHHHhhcCeEEE
Confidence 33333346789999999999999999999999999999999999875 23321 14677
Q ss_pred EecCCCHHHHHHHHHH
Q psy16850 147 RFLANTTDIIKEASKE 162 (174)
Q Consensus 147 ~f~HNd~~~Le~~L~~ 162 (174)
.+.++|+++|++.++.
T Consensus 109 ~v~~~d~~~l~~~i~~ 124 (369)
T cd00614 109 FVDPDDPEALEAAIKP 124 (369)
T ss_pred EeCCCCHHHHHHhcCC
Confidence 8899999999998864
No 55
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=98.11 E-value=1.3e-05 Score=72.15 Aligned_cols=102 Identities=19% Similarity=0.229 Sum_probs=77.2
Q ss_pred eccCcccCCCCCccchHHHHHHH-HHcCCCccccccccCCchHHHHHHH----HHHHHhCCCcE-----EEecchhHHHH
Q psy16850 57 YCSNDYLGMSCHPKVKSAVREAL-EKFGTGAGGTRNISGNSLFHEKLEE----DVARLHQKEAG-----LVFTSCYVAND 126 (174)
Q Consensus 57 f~SndYLGL~~~p~v~~a~~~al-~~~G~gs~~Sr~~~G~~~~~~~LE~----~lA~~~g~e~a-----l~f~sGy~aN~ 126 (174)
.+|.||+ +|.++++....+ .+|+.|..|||...|.... +++|+ .+|++||.+.. +.++||+.||.
T Consensus 40 ~~sen~~----s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~-~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~ 114 (452)
T PTZ00094 40 IASENFT----SRAVLECLGSCFTNKYAEGLPGNRYYGGNEVV-DKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANF 114 (452)
T ss_pred ecccccC----CHHHHHHhcchhhccccCCCCCccccccchHH-HHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHH
Confidence 3677776 688999998877 6798899999998887544 88884 89999997642 33468999999
Q ss_pred HHHHHhcccCCCCeeE---------------------------EEEEEecCC-----CHHHHHHHHHHhcc
Q psy16850 127 STLFTLGKMIPYFTEL---------------------------IYFYRFLAN-----TTDIIKEASKELQE 165 (174)
Q Consensus 127 ~~i~aL~~~~~g~~~s---------------------------~~~~~f~HN-----d~~~Le~~L~~~~~ 165 (174)
+++.+|.+ +|++.. ..+..|+|| |+++|++++++..+
T Consensus 115 ~v~~al~~--~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~~~ 183 (452)
T PTZ00094 115 AVYTALLQ--PHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKAFRP 183 (452)
T ss_pred HHHHHhcC--CCCEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHHhCC
Confidence 99999975 333221 123467777 99999999976544
No 56
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=97.90 E-value=7.9e-05 Score=64.03 Aligned_cols=91 Identities=23% Similarity=0.123 Sum_probs=65.6
Q ss_pred CCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCC------e
Q psy16850 67 CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYF------T 140 (174)
Q Consensus 67 ~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~------~ 140 (174)
-+|++.++..++. .|- - .+|..+...+||+.+++++|+|.+++++||.+||+..|.+++...+++ |
T Consensus 7 ~~~~m~~a~~~a~----~gd---~-~Yg~D~~~~~l~~~i~~l~g~e~a~f~~sGT~An~~al~~~~~~~~~vi~~~~aH 78 (290)
T PF01212_consen 7 PTPAMLEAMAAAN----VGD---D-AYGEDPTTARLEERIAELFGKEAALFVPSGTMANQLALRAHLRPGESVICADTAH 78 (290)
T ss_dssp S-HHEEHHHHHTT----SB----C-CTTSSHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHHHHTTEEEEEETTEH
T ss_pred CCHHHHHHHHccc----cCC---c-ccCCChhHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHhcCCceeccccce
Confidence 7999999985542 222 2 488999999999999999999999999999999999999998521110 0
Q ss_pred e-----------E-EEEEE--e---cCCCHHHHHHHHHHhcc
Q psy16850 141 E-----------L-IYFYR--F---LANTTDIIKEASKELQE 165 (174)
Q Consensus 141 ~-----------s-~~~~~--f---~HNd~~~Le~~L~~~~~ 165 (174)
. + ++++. - -.-|+++|++.+.....
T Consensus 79 i~~~E~ga~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~ 120 (290)
T PF01212_consen 79 IHFDETGAIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGA 120 (290)
T ss_dssp HHHSSTTHHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTG
T ss_pred eeeeccchhhHhcCcEEEECCCcccCCCCHHHHHHHhhhccc
Confidence 0 0 12221 1 24689999999998554
No 57
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=97.89 E-value=0.00013 Score=62.75 Aligned_cols=106 Identities=11% Similarity=0.085 Sum_probs=75.5
Q ss_pred CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcE--EEecchhHHHHH
Q psy16850 50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAG--LVFTSCYVANDS 127 (174)
Q Consensus 50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~a--l~f~sGy~aN~~ 127 (174)
.++.++||++| .+|.+.+++.+.++.+ .|. ++...|...+++++++.||+++|.+++ +++++|..+|..
T Consensus 21 ~~~~~~~~~~~------~~~~~~~a~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~ 91 (373)
T TIGR03812 21 DGRILGSMCTN------PHPIAVKAYDMFIETN-LGD--PGLFPGTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQ 91 (373)
T ss_pred CCcEEEEEeCC------chHHHHHHHHHHhhcC-CCC--cccCccHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHH
Confidence 45678899997 7888888887776553 222 234567788999999999999998754 899999999988
Q ss_pred HHHHhccc----CCCCeeE-----------------EEEEEecC-----CCHHHHHHHHHHhc
Q psy16850 128 TLFTLGKM----IPYFTEL-----------------IYFYRFLA-----NTTDIIKEASKELQ 164 (174)
Q Consensus 128 ~i~aL~~~----~~g~~~s-----------------~~~~~f~H-----Nd~~~Le~~L~~~~ 164 (174)
++.++... .+|..+. +.++.+++ .|+++|++.+.+..
T Consensus 92 ~~~~~~~~~~~~~~g~~vl~~~~~h~~~~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~l~~~~ 154 (373)
T TIGR03812 92 AVRAAKNLAREEKRTPNIIVPESAHFSFEKAAEMLGLELRYAPLDEDYTVDVKDVEDLIDDNT 154 (373)
T ss_pred HHHHHHHHHhccCCCcEEEECCcchHHHHHHHHHcCCeEEEEeeCCCCCcCHHHHHHHHhhCc
Confidence 88766420 1222221 35666666 48999999887644
No 58
>PLN02721 threonine aldolase
Probab=97.87 E-value=0.00011 Score=62.52 Aligned_cols=100 Identities=19% Similarity=0.155 Sum_probs=70.0
Q ss_pred eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHh
Q psy16850 53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTL 132 (174)
Q Consensus 53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL 132 (174)
++++|+||.=. . ..|.+++++.+. -.+. ...+..+.+.+||++||+++|.+.++++++|..+|+.++.++
T Consensus 6 ~~~~~~~~~~~-~-~~~~~~~a~~~~----~~~~----~~~~~~~~~~~l~~~la~~~~~~~~~~~~~Gs~a~~~~l~~~ 75 (353)
T PLN02721 6 RVVDLRSDTVT-K-PTDAMRAAMANA----EVDD----DVLGYDPTALRLEEEMAKIFGKEAALFVPSGTMGNLISVLVH 75 (353)
T ss_pred hhhhhhccccc-C-CCHHHHHHHHhc----cCCC----cccCCCHHHHHHHHHHHHHhCCceeEEecCccHHHHHHHHHH
Confidence 46899998666 3 467777776442 1111 123456778999999999999999999999999999998887
Q ss_pred cccCCCCeeE--------------------EEEEEecCC-----CHHHHHHHHHHh
Q psy16850 133 GKMIPYFTEL--------------------IYFYRFLAN-----TTDIIKEASKEL 163 (174)
Q Consensus 133 ~~~~~g~~~s--------------------~~~~~f~HN-----d~~~Le~~L~~~ 163 (174)
.+. +|+++. +.++.++++ |+++|++.+++.
T Consensus 76 ~~~-~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~ 130 (353)
T PLN02721 76 CDV-RGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNNEDGTMDLDAIEAAIRPK 130 (353)
T ss_pred ccC-CCCeEEEcCccceehhcccchhhhcCceeEecCCCcCCCcCHHHHHHHHHhc
Confidence 641 222111 345556654 889999998754
No 59
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=97.86 E-value=5.6e-05 Score=68.56 Aligned_cols=80 Identities=16% Similarity=0.111 Sum_probs=65.2
Q ss_pred ecCCeeEEEeccCcccCCC-CCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--CcEEEecchhHH
Q psy16850 48 TDSEKEVTVYCSNDYLGMS-CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--EAGLVFTSCYVA 124 (174)
Q Consensus 48 ~~~g~~~inf~SndYLGL~-~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--e~al~f~sGy~a 124 (174)
..+|+++|+|+++.++.|. .||+|++|+.+.+++++.++ ++. .++.+.+|+++|+++++. +.+.+.+||-.|
T Consensus 68 D~dG~~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~--~~~---~~~~~~~lae~L~~~~p~~~~~v~f~~sGseA 142 (459)
T PRK06082 68 DVDGKKYMDFHGNNVHQLGYGHPHVIEKVKEQMAKLPFSP--RRF---TNETAIECAEKLTEIAGGELNRVLFAPGGTSA 142 (459)
T ss_pred ECCCCEEEEcccHhhcccCCCCHHHHHHHHHHHHhCCCcc--Ccc---CCHHHHHHHHHHHHhCCCCCCEEEECCCcHHH
Confidence 3689999999999997777 59999999999999876542 333 258899999999999853 577888889999
Q ss_pred HHHHHHHh
Q psy16850 125 NDSTLFTL 132 (174)
Q Consensus 125 N~~~i~aL 132 (174)
|-+.+..-
T Consensus 143 ve~AlklA 150 (459)
T PRK06082 143 IGMALKLA 150 (459)
T ss_pred HHHHHHHH
Confidence 98888643
No 60
>PRK06149 hypothetical protein; Provisional
Probab=97.86 E-value=5e-05 Score=74.67 Aligned_cols=76 Identities=17% Similarity=0.158 Sum_probs=64.0
Q ss_pred ecCCeeEEEeccCcccCCC-CCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh--CCCcEEEecchhHH
Q psy16850 48 TDSEKEVTVYCSNDYLGMS-CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH--QKEAGLVFTSCYVA 124 (174)
Q Consensus 48 ~~~g~~~inf~SndYLGL~-~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~--g~e~al~f~sGy~a 124 (174)
..+|+++|+|.+| |.+|. .||+|.+|+.+.+.+... .+|. .++.+.+|+++|++++ +.+.+.+++||+.|
T Consensus 581 D~dG~~ylD~~~~-~~~lGh~hp~v~~Ai~~q~~~l~~---~~~~---~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA 653 (972)
T PRK06149 581 DMAGRSYLDMVNN-VTVLGHGHPRLAAAAARQWSLLNT---NSRF---HYAAVAEFSERLAALAPDGLDTVFLVNSGSEA 653 (972)
T ss_pred eCCCCEEEECCCC-ccccCCCCHHHHHHHHHHHHhccc---cccc---cCHHHHHHHHHHHHhCCCCcCEEEEeCCchHH
Confidence 4689999999965 88898 599999999988876432 3443 4578999999999999 56899999999999
Q ss_pred HHHHHH
Q psy16850 125 NDSTLF 130 (174)
Q Consensus 125 N~~~i~ 130 (174)
|-+.|.
T Consensus 654 ~e~Alk 659 (972)
T PRK06149 654 NDLAIR 659 (972)
T ss_pred HHHHHH
Confidence 999998
No 61
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=97.75 E-value=7.7e-05 Score=65.60 Aligned_cols=71 Identities=25% Similarity=0.284 Sum_probs=59.2
Q ss_pred EEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcc
Q psy16850 55 TVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGK 134 (174)
Q Consensus 55 inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~ 134 (174)
++|.|-++=| .+|++++++.++- .+--.++|+.+..+++|+.+|+.+|++++++++||.+||+-.|.++++
T Consensus 2 ~~f~SDn~~g--~~~~m~eam~~a~-------~~~~~~YG~D~~~~~~e~~~ae~~g~~a~~Fv~sGT~aN~lal~~~~~ 72 (342)
T COG2008 2 IDFRSDNVAG--PTPEMREALAAAN-------AVGDDVYGEDPTTNALEQRIAELFGKEAALFVPSGTQANQLALAAHCQ 72 (342)
T ss_pred CccccCccCC--CCHHHHHHHHhcc-------ccCCCCCCCCHHHHHHHHHHHHHhCCceEEEecCccHHHHHHHHHhcC
Confidence 4566655544 3799999988752 122467899999999999999999999999999999999999999996
No 62
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=97.71 E-value=0.00037 Score=62.56 Aligned_cols=108 Identities=18% Similarity=0.052 Sum_probs=74.7
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh-CCCcEEEecchhH
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH-QKEAGLVFTSCYV 123 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~-g~e~al~f~sGy~ 123 (174)
..+|+++|+|.+. .-||-+ ||+|.+|+.+.+++.. . .+.......+|-++|++.+ +.+.+.+.+||-.
T Consensus 44 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~~-~------~~~~~~~~~~la~~l~~~~p~~~~v~f~~sGse 115 (431)
T PRK06209 44 DVDGNEYIEYGMGLRAVGLGHA-YPPVVEAVREALQDGC-N------FTRPSAIELDAAESFLELIDGADMVKFCKNGSD 115 (431)
T ss_pred eCCCCEEEEccccccchhcCCC-CHHHHHHHHHHHHhCc-C------CCCCCHHHHHHHHHHHHhCCccceEEEecCHHH
Confidence 4689999999764 335554 8999999999988632 1 2222334457888898887 3578999999999
Q ss_pred HHHHHHHHhc---cc-----C--CCCe-----------eE--------EEEEEecCCCHHHHHHHHHHh
Q psy16850 124 ANDSTLFTLG---KM-----I--PYFT-----------EL--------IYFYRFLANTTDIIKEASKEL 163 (174)
Q Consensus 124 aN~~~i~aL~---~~-----~--~g~~-----------~s--------~~~~~f~HNd~~~Le~~L~~~ 163 (174)
||-+.|..-. ++ . .+.+ .+ ..+..|+|||+++||++|++.
T Consensus 116 A~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 184 (431)
T PRK06209 116 ATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFRYNDIASLEALFEDH 184 (431)
T ss_pred HHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhccccccCCCCHHHHHHHHHhC
Confidence 9999988321 10 0 0000 00 125689999999999999764
No 63
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=97.66 E-value=0.00023 Score=63.49 Aligned_cols=66 Identities=15% Similarity=-0.100 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHHH
Q psy16850 97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTDI 155 (174)
Q Consensus 97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~~ 155 (174)
+..++||+.||++.|.+.|++++||..|+..++.++.. +|.++. +.++.+.++|+++
T Consensus 70 p~~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all~--~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~d~~~ 147 (403)
T PRK07810 70 PTVSMFEERLRLIEGAEACFATASGMSAVFTALGALLG--AGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGEDLSQ 147 (403)
T ss_pred chHHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHhC--CCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCCCHHH
Confidence 45899999999999999999999999999999988875 343321 4677888999999
Q ss_pred HHHHHHHhc
Q psy16850 156 IKEASKELQ 164 (174)
Q Consensus 156 Le~~L~~~~ 164 (174)
|++.++...
T Consensus 148 l~~ai~~~t 156 (403)
T PRK07810 148 WEEALSVPT 156 (403)
T ss_pred HHHhcCcCc
Confidence 999987543
No 64
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=97.64 E-value=6.7e-05 Score=67.31 Aligned_cols=115 Identities=13% Similarity=0.080 Sum_probs=69.5
Q ss_pred ecCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCcccc----------------------ccc---cCCchHH
Q psy16850 48 TDSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGT----------------------RNI---SGNSLFH 99 (174)
Q Consensus 48 ~~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~S----------------------r~~---~G~~~~~ 99 (174)
..+|+++|+|+|+. +|| ..||+|.+++.+.+++++....+. +.+ +|+....
T Consensus 41 d~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e 119 (427)
T TIGR00508 41 LDDGRRLIDGMSSWWAAIHG-YNHPRLNAAAQKQIDKMSHVMFGGFTHKPAIELCQKLVKMTPNALDCVFLADSGSVAVE 119 (427)
T ss_pred eCCCCEEEEccchHHHhcCC-CCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHH
Confidence 45799999999987 999 779999999999999876332210 111 3444444
Q ss_pred HHHHHHHHHHh-----CCCcEEEecchhHHHHHHHHHhcccC-----------CCCeeE-EEEE----EecCCCHHHHHH
Q psy16850 100 EKLEEDVARLH-----QKEAGLVFTSCYVANDSTLFTLGKMI-----------PYFTEL-IYFY----RFLANTTDIIKE 158 (174)
Q Consensus 100 ~~LE~~lA~~~-----g~e~al~f~sGy~aN~~~i~aL~~~~-----------~g~~~s-~~~~----~f~HNd~~~Le~ 158 (174)
..++-..+-+. |+...|.|..||+.+.....++.+.. ++.... .... .|.|+|+++|++
T Consensus 120 ~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~ 199 (427)
T TIGR00508 120 VALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAK 199 (427)
T ss_pred HHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccchhHHHHHHHHHH
Confidence 44444333221 35567777777777765544443310 000000 1111 236779999999
Q ss_pred HHHHh
Q psy16850 159 ASKEL 163 (174)
Q Consensus 159 ~L~~~ 163 (174)
++.+.
T Consensus 200 ~l~~~ 204 (427)
T TIGR00508 200 LMELH 204 (427)
T ss_pred HHHhc
Confidence 99764
No 65
>PRK04311 selenocysteine synthase; Provisional
Probab=97.56 E-value=0.00056 Score=62.47 Aligned_cols=81 Identities=20% Similarity=0.118 Sum_probs=55.0
Q ss_pred eeEEEecc---CcccCCCC-CccchHHHHHHHHHcCCCccccccccC-CchHHHHHHHHHHHHhCCCcEEEecchhHHHH
Q psy16850 52 KEVTVYCS---NDYLGMSC-HPKVKSAVREALEKFGTGAGGTRNISG-NSLFHEKLEEDVARLHQKEAGLVFTSCYVAND 126 (174)
Q Consensus 52 ~~~inf~S---ndYLGL~~-~p~v~~a~~~al~~~G~gs~~Sr~~~G-~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~ 126 (174)
+++||-.. .+-+|-+. .+++++++.+++..|+.-. ..+..| ....+.++|+.||+++|.|+|++|+||+.|+.
T Consensus 79 r~vinatg~v~~tNlg~s~l~~~v~eav~~~~~~~~~le--~~l~~g~~g~r~~~~e~~lA~l~Gae~a~vv~sgtaAl~ 156 (464)
T PRK04311 79 RPVINATGVVLHTNLGRALLSEAAIEAVTEAARGYSNLE--YDLATGKRGSRDRALAALLCALTGAEDALVVNNNAAAVL 156 (464)
T ss_pred cceecCCccEEeccCCCCCCCHHHHHHHHHHHhcccccc--cchhhcccchHHHHHHHHHHHHhCCCeEEEECCHHHHHH
Confidence 44555444 23344443 6777888888776664210 001101 12458899999999999999999999999999
Q ss_pred HHHHHhcc
Q psy16850 127 STLFTLGK 134 (174)
Q Consensus 127 ~~i~aL~~ 134 (174)
.++.+|..
T Consensus 157 l~l~~l~~ 164 (464)
T PRK04311 157 LALNALAA 164 (464)
T ss_pred HHHHHhCC
Confidence 99988753
No 66
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=97.54 E-value=0.00075 Score=59.78 Aligned_cols=71 Identities=17% Similarity=-0.023 Sum_probs=56.4
Q ss_pred cccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEE
Q psy16850 87 GGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYF 145 (174)
Q Consensus 87 ~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~ 145 (174)
..+|.. .+.+++||+.||+++|.+++++++||..|+..++.++.+ +|.++. +.+
T Consensus 54 ~y~r~~---~p~~~~le~~la~l~g~~~~v~~ssG~~Ai~~al~al~~--~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v 128 (390)
T PRK08133 54 IYSRFT---NPTVTMFQERLAALEGAEACVATASGMAAILAVVMALLQ--AGDHVVSSRSLFGSTVSLFEKIFARFGIET 128 (390)
T ss_pred eeECCC---ChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEccCcchhHHHHHHHHHHHcCcEE
Confidence 345543 467999999999999999999999999999999988865 343321 466
Q ss_pred EEecCCCHHHHHHHHHH
Q psy16850 146 YRFLANTTDIIKEASKE 162 (174)
Q Consensus 146 ~~f~HNd~~~Le~~L~~ 162 (174)
..+..+|+++|++.++.
T Consensus 129 ~~vd~~d~~~l~~~i~~ 145 (390)
T PRK08133 129 TFVDLTDLDAWRAAVRP 145 (390)
T ss_pred EEECCCCHHHHHHhcCc
Confidence 77788899999988864
No 67
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=97.54 E-value=0.00053 Score=62.03 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=36.2
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcc
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGK 134 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~ 134 (174)
.+.+++||+.||++.|.+.|++|+||+.|+.++|.+|++
T Consensus 68 ~p~~~~Le~~lA~l~g~~~av~~sSG~aAi~~al~all~ 106 (436)
T PRK07812 68 NPTQDVVEQRIAALEGGVAALLLASGQAAETFAILNLAG 106 (436)
T ss_pred CchHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhC
Confidence 467889999999999999999999999999999998875
No 68
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=97.54 E-value=0.00038 Score=61.60 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=50.9
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD 154 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~ 154 (174)
.+.+.+||++||++.|.+.|++|+||+.|+..++.+|.+ +|+++. +.+..+.+++.+
T Consensus 49 nPt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all~--~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e 126 (377)
T TIGR01324 49 TLTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFVK--AGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPLIGE 126 (377)
T ss_pred CccHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhcC--CCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCCCHH
Confidence 368999999999999999999999999999999999876 454432 244455566667
Q ss_pred HHHHHHHH
Q psy16850 155 IIKEASKE 162 (174)
Q Consensus 155 ~Le~~L~~ 162 (174)
+|++.++.
T Consensus 127 ~l~~~i~~ 134 (377)
T TIGR01324 127 DIATLIQP 134 (377)
T ss_pred HHHHhcCC
Confidence 77777654
No 69
>PLN02242 methionine gamma-lyase
Probab=97.50 E-value=0.00048 Score=61.84 Aligned_cols=70 Identities=20% Similarity=0.025 Sum_probs=54.6
Q ss_pred cccC--CchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE----------------------EEEE
Q psy16850 91 NISG--NSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL----------------------IYFY 146 (174)
Q Consensus 91 ~~~G--~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s----------------------~~~~ 146 (174)
.+++ ..+.+++||+.||+++|.+.+++++||++|+..++.+|++ +|+++. +.+.
T Consensus 68 ~~Y~r~~~Pt~~~LE~~lA~l~g~~~~l~~~sG~~Ai~~al~al~~--~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~ 145 (418)
T PLN02242 68 YIYSRHFNPTVLNLGRQMAALEGTEAAYCTASGMSAISSVLLQLCS--SGGHVVASNTLYGGTHALLAHFLPRKCNITTT 145 (418)
T ss_pred ccccCCCChhHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhC--CCCEEEEcCCcHHHHHHHHHHhhhhccCceEE
Confidence 4455 3688999999999999999999999999999999999876 343332 2344
Q ss_pred EecCCCHHHHHHHHHH
Q psy16850 147 RFLANTTDIIKEASKE 162 (174)
Q Consensus 147 ~f~HNd~~~Le~~L~~ 162 (174)
.+...|+++|++.++.
T Consensus 146 ~~d~~d~e~l~~~i~~ 161 (418)
T PLN02242 146 FVDITDLEAVKKAVVP 161 (418)
T ss_pred EcCCCCHHHHHHhcCc
Confidence 4556688888887754
No 70
>PRK10534 L-threonine aldolase; Provisional
Probab=97.48 E-value=0.00039 Score=59.16 Aligned_cols=71 Identities=21% Similarity=0.168 Sum_probs=56.7
Q ss_pred EEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhc
Q psy16850 54 VTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLG 133 (174)
Q Consensus 54 ~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~ 133 (174)
+|+|+||.==| -+|.++++..+++. + ...+|..+.+.+||++||+++|.+.++++++|..++...+.+++
T Consensus 1 ~~~~~~~~~~~--p~~~~~~a~~~~~~----~----~~~Y~~~~~~~~L~~~la~~~g~~~~~v~~~g~~a~~~~l~~~~ 70 (333)
T PRK10534 1 MIDLRSDTVTR--PSRAMLEAMMAAPV----G----DDVYGDDPTVNALQDYAAELSGKEAALFLPTGTQANLVALLSHC 70 (333)
T ss_pred CcccccccCCC--CCHHHHHHHHhccC----C----CcccCCCHHHHHHHHHHHHHhCCCeEEEeCchHHHHHHHHHHhc
Confidence 47889998777 56788887665321 1 12355678899999999999999999999999999999888886
Q ss_pred c
Q psy16850 134 K 134 (174)
Q Consensus 134 ~ 134 (174)
.
T Consensus 71 ~ 71 (333)
T PRK10534 71 E 71 (333)
T ss_pred C
Confidence 5
No 71
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=97.47 E-value=0.00062 Score=60.84 Aligned_cols=73 Identities=18% Similarity=0.074 Sum_probs=57.7
Q ss_pred ccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EE
Q psy16850 86 AGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IY 144 (174)
Q Consensus 86 s~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~ 144 (174)
..-||... +..++||++||++.|.+.+++++||..|+..++.++++ +|.++. +.
T Consensus 49 ~~ysr~~~---p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~~--~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~ 123 (418)
T TIGR01326 49 NIYSRLMN---PTTDVLEQRIAALEGGVAALAVASGQAAITYAILNLAQ--AGDNIVSSSYLYGGTYNLFKHTLKRLGIE 123 (418)
T ss_pred ceeECCCC---hhHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhC--CCCEEEEECCCcHHHHHHHHHHHHHcCcE
Confidence 33566543 56799999999999999999999999999999988865 343321 46
Q ss_pred EEEecCCCHHHHHHHHHHh
Q psy16850 145 FYRFLANTTDIIKEASKEL 163 (174)
Q Consensus 145 ~~~f~HNd~~~Le~~L~~~ 163 (174)
+..++++|+++|++.++..
T Consensus 124 v~~v~~~d~~~l~~~l~~~ 142 (418)
T TIGR01326 124 VRFVDPDDPEEFEKAIDEN 142 (418)
T ss_pred EEEECCCCHHHHHHhcCcC
Confidence 6778889999999988653
No 72
>PRK08114 cystathionine beta-lyase; Provisional
Probab=97.45 E-value=0.00062 Score=60.97 Aligned_cols=65 Identities=14% Similarity=0.065 Sum_probs=55.3
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD 154 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~ 154 (174)
.+....||+.||++-|.+.|++|+||..|..+++.+|.+ +|+++. +.+..+.+.|++
T Consensus 61 nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~--~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~ 138 (395)
T PRK08114 61 TLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVE--QGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPLIGA 138 (395)
T ss_pred ChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcC--CCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECCCCHH
Confidence 478999999999999999999999999999999998876 454432 367788899999
Q ss_pred HHHHHHHH
Q psy16850 155 IIKEASKE 162 (174)
Q Consensus 155 ~Le~~L~~ 162 (174)
.+++.|+.
T Consensus 139 ~l~~~l~~ 146 (395)
T PRK08114 139 DIAKLIQP 146 (395)
T ss_pred HHHHhcCC
Confidence 99998864
No 73
>PRK06234 methionine gamma-lyase; Provisional
Probab=97.38 E-value=0.001 Score=59.17 Aligned_cols=66 Identities=20% Similarity=0.085 Sum_probs=54.1
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD 154 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~ 154 (174)
.+-..+||+.||++.|.+.+++++||..|+..++.++.+ +|.++. +.+..+..+|++
T Consensus 63 ~p~~~~Le~~iA~~~g~~~~l~~~sG~~Ai~~al~~ll~--~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e 140 (400)
T PRK06234 63 NPTSTEVENKLALLEGGEAAVVAASGMGAISSSLWSALK--AGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTSNLE 140 (400)
T ss_pred CccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhC--CCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCCCHH
Confidence 356889999999999999999999999999999988865 333221 567788899999
Q ss_pred HHHHHHHHh
Q psy16850 155 IIKEASKEL 163 (174)
Q Consensus 155 ~Le~~L~~~ 163 (174)
+|++.+...
T Consensus 141 ~l~~~i~~~ 149 (400)
T PRK06234 141 EVRNALKAN 149 (400)
T ss_pred HHHHHhccC
Confidence 999988653
No 74
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=97.37 E-value=0.0021 Score=58.75 Aligned_cols=108 Identities=17% Similarity=0.023 Sum_probs=76.3
Q ss_pred ecCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh-CCCcEEEecchhH
Q psy16850 48 TDSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH-QKEAGLVFTSCYV 123 (174)
Q Consensus 48 ~~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~-g~e~al~f~sGy~ 123 (174)
..+|+++|||.+.- -||-+ ||+|.+++.+.+++. ... ...++...+|-++|++.+ +.+.+.+.+||-.
T Consensus 95 D~dG~~yiD~~~g~g~~~lGh~-~p~v~~av~~ql~~~-~~~------~~~~~~~~~lAe~l~~~~p~~~~v~f~~SGsE 166 (474)
T PLN02482 95 DVDGNEYIDYVGSWGPAIIGHA-DDEVLAALAETMKKG-TSF------GAPCLLENVLAEMVIDAVPSVEMVRFVNSGTE 166 (474)
T ss_pred ECCCCEEEEecccccccccCCC-CHHHHHHHHHHHhhC-CCC------CCCCHHHHHHHHHHHHhCCCCCEEEEeCChHH
Confidence 46899999997652 24433 899999999998763 211 124566778888888876 4688999999999
Q ss_pred HHHHHHHHhcc---c---------CCCCe-----------------eE--------EEEEEecCCCHHHHHHHHHHh
Q psy16850 124 ANDSTLFTLGK---M---------IPYFT-----------------EL--------IYFYRFLANTTDIIKEASKEL 163 (174)
Q Consensus 124 aN~~~i~aL~~---~---------~~g~~-----------------~s--------~~~~~f~HNd~~~Le~~L~~~ 163 (174)
||.+.|..--. + ..|.. .+ ..+..++|||+++||++|++.
T Consensus 167 A~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~~~ 243 (474)
T PLN02482 167 ACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYNDLEAVKKLFEAN 243 (474)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCCChHHHHHHHHhC
Confidence 99999874321 0 11211 01 146789999999999999864
No 75
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=97.36 E-value=0.0027 Score=54.77 Aligned_cols=99 Identities=16% Similarity=0.070 Sum_probs=66.8
Q ss_pred CCeeEEEeccC-cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC-cEEEecchhHHHHH
Q psy16850 50 SEKEVTVYCSN-DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-AGLVFTSCYVANDS 127 (174)
Q Consensus 50 ~g~~~inf~Sn-dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-~al~f~sGy~aN~~ 127 (174)
+++++++|++| +++|. .|.+++++.++++.+.. ++. ..+.+|++.+|++++.+ +.|++++|....+.
T Consensus 30 ~~~~~i~l~~~~~~~~~--~~~~~~a~~~~~~~~~~--------y~~-~~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~ 98 (367)
T PRK02731 30 GIADIIKLASNENPLGP--SPKAIEAIRAAADELHR--------YPD-GSGFELKAALAEKFGVDPERIILGNGSDEILE 98 (367)
T ss_pred CCCceEEecCCCCCCCC--CHHHHHHHHHHHHhhcC--------CCC-CcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHH
Confidence 45679999999 58885 68899999888765321 111 11478999999999975 57999999887665
Q ss_pred HH-HHhcccCCCCeeE-----------------EEEEEecC----CCHHHHHHHHH
Q psy16850 128 TL-FTLGKMIPYFTEL-----------------IYFYRFLA----NTTDIIKEASK 161 (174)
Q Consensus 128 ~i-~aL~~~~~g~~~s-----------------~~~~~f~H----Nd~~~Le~~L~ 161 (174)
++ .++.+ +|.... +.++.++. -|+++|++.+.
T Consensus 99 ~~~~~l~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 152 (367)
T PRK02731 99 LLARAYLG--PGDEVIYSEHGFAVYPIAAQAVGAKPVEVPAKDYGHDLDAMLAAVT 152 (367)
T ss_pred HHHHHhcC--CCCEEEEecCCHHHHHHHHHHcCCeEEEecccCCCCCHHHHHHHhC
Confidence 54 55544 333222 24455543 36788887775
No 76
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=97.34 E-value=0.0012 Score=58.64 Aligned_cols=63 Identities=24% Similarity=0.084 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHHH
Q psy16850 97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTDI 155 (174)
Q Consensus 97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~~ 155 (174)
+.+.+||+.||+++|.+.+++++||..|+..++.+|.+ +|+++. +.+..+.-+|+++
T Consensus 59 p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~~l~al~~--~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~d~e~ 136 (391)
T TIGR01328 59 PTVSNLEGRIAFLEGTEAAVATSSGMGAIAATLLTILK--AGDHLISDECLYGCTFALLEHALTKFGIQVDFINMAIPEE 136 (391)
T ss_pred chHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECCCCHHH
Confidence 56899999999999999999999999999999998865 444332 2344455556666
Q ss_pred HHHHHH
Q psy16850 156 IKEASK 161 (174)
Q Consensus 156 Le~~L~ 161 (174)
+++.+.
T Consensus 137 l~~~i~ 142 (391)
T TIGR01328 137 VKAHIK 142 (391)
T ss_pred HHHhhc
Confidence 666664
No 77
>PRK05939 hypothetical protein; Provisional
Probab=97.33 E-value=0.001 Score=59.27 Aligned_cols=65 Identities=12% Similarity=0.091 Sum_probs=53.8
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE--------------------EEEEEecCCCHHH
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL--------------------IYFYRFLANTTDI 155 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s--------------------~~~~~f~HNd~~~ 155 (174)
.+..++||+.||++.|.+.|++|+||..|..+++.++.+ +|.++. +.+..+...|+++
T Consensus 46 ~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~--~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~~d~e~ 123 (397)
T PRK05939 46 TPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLR--AGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDATDVQN 123 (397)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcC--CCCEEEECCCccccHHHHHHHHHhcCCEEEEECCCCHHH
Confidence 477999999999999999999999999999999988865 343322 4667778889999
Q ss_pred HHHHHHH
Q psy16850 156 IKEASKE 162 (174)
Q Consensus 156 Le~~L~~ 162 (174)
|++.+..
T Consensus 124 l~~~l~~ 130 (397)
T PRK05939 124 VAAAIRP 130 (397)
T ss_pred HHHhCCC
Confidence 9988864
No 78
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=97.31 E-value=0.00089 Score=59.31 Aligned_cols=64 Identities=28% Similarity=0.221 Sum_probs=50.4
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE--------------------EEEEEecCCCHHH
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL--------------------IYFYRFLANTTDI 155 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s--------------------~~~~~f~HNd~~~ 155 (174)
.+.+++||+.+|+++|.+++++|+||..|+..++.++.+ +|+++. +.+ .|-..|+++
T Consensus 52 np~~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~ll~--~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v-~~~~~d~~~ 128 (385)
T PRK08574 52 NPTLRPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLK--AGDRVVLPMEAYGTTLRLLKSLEKFGVKV-VLAYPSTED 128 (385)
T ss_pred CccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC--CCCEEEEcCCCchhHHHHHHHhhccCcEE-EEECCCHHH
Confidence 367999999999999999999999999999999998875 444332 122 233578888
Q ss_pred HHHHHHH
Q psy16850 156 IKEASKE 162 (174)
Q Consensus 156 Le~~L~~ 162 (174)
|++.+++
T Consensus 129 l~~~i~~ 135 (385)
T PRK08574 129 IIEAIKE 135 (385)
T ss_pred HHHhcCc
Confidence 8888765
No 79
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=97.30 E-value=0.001 Score=59.20 Aligned_cols=65 Identities=22% Similarity=0.182 Sum_probs=53.7
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD 154 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~ 154 (174)
.+.+++||+.||++.|.+.+++|+||..|+..++.++.+ +|.++. +.+..+...|++
T Consensus 63 ~p~~~~le~~lA~l~g~~~~i~~ssG~~Ai~~~l~all~--~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~d~e 140 (398)
T PRK08249 63 NPTVQAFEEKVRILEGAEAATAFSTGMAAISNTLYTFLK--PGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCETGDHE 140 (398)
T ss_pred ChHHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC--CCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCCCCHH
Confidence 478999999999999999999999999999999988865 343221 456667888999
Q ss_pred HHHHHHHH
Q psy16850 155 IIKEASKE 162 (174)
Q Consensus 155 ~Le~~L~~ 162 (174)
+|++.++.
T Consensus 141 ~l~~~i~~ 148 (398)
T PRK08249 141 QIEAEIAK 148 (398)
T ss_pred HHHHhcCC
Confidence 99988865
No 80
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=97.28 E-value=0.0017 Score=56.58 Aligned_cols=103 Identities=14% Similarity=0.098 Sum_probs=70.6
Q ss_pred CCee-EEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC-CcEEEecchhHHHHH
Q psy16850 50 SEKE-VTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK-EAGLVFTSCYVANDS 127 (174)
Q Consensus 50 ~g~~-~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~-e~al~f~sGy~aN~~ 127 (174)
.|+. .++|+.|+ .++...|++++++.+++... .+ ++.. .+.+|+++||+|++. ++.|++++|...++.
T Consensus 29 ~g~~~~~~l~~~~-~~~~~~~~~~~a~~~~~~~~-~~-------Y~~~-~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~ 98 (369)
T PRK08153 29 RGRPFRARIGANE-SGFGPSPSVIAAMREAAAEI-WK-------YGDP-ENHDLRHALAAHHGVAPENIMVGEGIDGLLG 98 (369)
T ss_pred cCCcceeEecCCC-CCCCCCHHHHHHHHHHHHHh-hc-------CCCC-ccHHHHHHHHHHhCCCHHHEEEcCCHHHHHH
Confidence 4554 46999996 58999999999998876431 11 1122 267999999999985 468999999999997
Q ss_pred HHHHh-cccCCCCeeE-----------------EEEEEec-CCCHHHHHHHHHHhc
Q psy16850 128 TLFTL-GKMIPYFTEL-----------------IYFYRFL-ANTTDIIKEASKELQ 164 (174)
Q Consensus 128 ~i~aL-~~~~~g~~~s-----------------~~~~~f~-HNd~~~Le~~L~~~~ 164 (174)
.+..+ ++ +|+... +.++.++ |+|..+++.+++...
T Consensus 99 ~~~~~~~~--~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~~~~~~~l~~~~~ 152 (369)
T PRK08153 99 LIVRLYVE--PGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRDDREDLDALLDAAR 152 (369)
T ss_pred HHHHHhcC--CCCEEEECCCcchHHHHHHHHcCCeEEEeeCCCCCCCHHHHHHHhc
Confidence 76554 44 343322 2333333 788777887776654
No 81
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=97.25 E-value=0.0049 Score=54.58 Aligned_cols=108 Identities=21% Similarity=0.111 Sum_probs=76.5
Q ss_pred ecCCeeEEEeccCcc---cCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC-CCcEEEecchhH
Q psy16850 48 TDSEKEVTVYCSNDY---LGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ-KEAGLVFTSCYV 123 (174)
Q Consensus 48 ~~~g~~~inf~SndY---LGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g-~e~al~f~sGy~ 123 (174)
..+|+++|||.+.-. ||- .||+|++|+.+.+++ +.. .....+...+|-++|++++. .+.+++++||-.
T Consensus 44 d~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~-~~~------~~~~~~~~~~lae~l~~~~~~~~~v~~~~sGse 115 (423)
T TIGR00713 44 DVDGNEYIDYVLSWGPLILGH-AHPRVVEAVKEALER-GTS------YGAPTEAEILLAKEIISRVPSVEMVRFVNSGTE 115 (423)
T ss_pred eCCCCEEEEccccccccccCC-CCHHHHHHHHHHHHh-CCc------CCCCCHHHHHHHHHHHHhCCcccEEEEeCCHHH
Confidence 467899999987632 333 389999999999876 221 12345677899999999885 468999999999
Q ss_pred HHHHHHHHhcc---c---------CCCC-----------------------e--eEEEEEEecCCCHHHHHHHHHHh
Q psy16850 124 ANDSTLFTLGK---M---------IPYF-----------------------T--ELIYFYRFLANTTDIIKEASKEL 163 (174)
Q Consensus 124 aN~~~i~aL~~---~---------~~g~-----------------------~--~s~~~~~f~HNd~~~Le~~L~~~ 163 (174)
||.++|..... . ..|. . .....++++|||+++||+++++.
T Consensus 116 A~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~ 192 (423)
T TIGR00713 116 ATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEY 192 (423)
T ss_pred HHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHc
Confidence 99998875211 0 1110 0 00236788999999999999754
No 82
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=97.24 E-value=0.0025 Score=54.65 Aligned_cols=95 Identities=15% Similarity=0.111 Sum_probs=66.4
Q ss_pred CCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc--EEEecchhHHHHHHHHHhcccC--CCCeeE
Q psy16850 67 CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA--GLVFTSCYVANDSTLFTLGKMI--PYFTEL 142 (174)
Q Consensus 67 ~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~--al~f~sGy~aN~~~i~aL~~~~--~g~~~s 142 (174)
.+|++++++.+.++.. .+.++...|....++++++.||+++|.+. .+++++|+.+|..++.++.... ++.+..
T Consensus 32 ~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl 108 (371)
T PRK13520 32 PHPIARKAHEMFLETN---LGDPGLFPGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIV 108 (371)
T ss_pred chHHHHHHHHHHHhcC---CCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEE
Confidence 4788899988888653 22233345777888999999999999764 5889999999999987764310 121111
Q ss_pred -----------------EEEEEec-----CCCHHHHHHHHHHhc
Q psy16850 143 -----------------IYFYRFL-----ANTTDIIKEASKELQ 164 (174)
Q Consensus 143 -----------------~~~~~f~-----HNd~~~Le~~L~~~~ 164 (174)
+.++.++ +.|+++|++.+....
T Consensus 109 ~~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~ 152 (371)
T PRK13520 109 VPESAHFSFDKAADMLGVELRRAPLDDDYRVDVKAVEDLIDDNT 152 (371)
T ss_pred ecCcchHHHHHHHHHcCceEEEecCCCCCcCCHHHHHHHHhhCC
Confidence 3445554 458999999987543
No 83
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=97.22 E-value=0.0022 Score=57.63 Aligned_cols=73 Identities=18% Similarity=0.036 Sum_probs=57.4
Q ss_pred ccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EE
Q psy16850 86 AGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IY 144 (174)
Q Consensus 86 s~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~ 144 (174)
..-||... +...+||++||++.|.+.+++|+||..|...++.+|.+ +|.++. +.
T Consensus 50 ~~y~r~~~---pt~~~Le~~lA~l~g~~~~l~~ssG~~Ai~~al~al~~--~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~ 124 (425)
T PRK06084 50 NIYTRIMN---PTNDVLEQRVAALEGGVGALAVASGMAAITYAIQTIAE--AGDNIVSVAKLYGGTYNLLAHTLPRIGIE 124 (425)
T ss_pred ccccCCCC---chHHHHHHHHHHHhCCCceeEehhHHHHHHHHHHHHhC--CCCEEEEeCCCcchHHHHHHHhcccceeE
Confidence 44556533 56789999999999999999999999999999998875 333221 34
Q ss_pred EEEecCCCHHHHHHHHHHh
Q psy16850 145 FYRFLANTTDIIKEASKEL 163 (174)
Q Consensus 145 ~~~f~HNd~~~Le~~L~~~ 163 (174)
+..+.++|+++||+.+++.
T Consensus 125 v~~~d~~d~e~le~ai~~~ 143 (425)
T PRK06084 125 TRFAAHDDIAALEALIDER 143 (425)
T ss_pred EEEECCCCHHHHHHHhccC
Confidence 5667889999999998753
No 84
>PRK05968 hypothetical protein; Provisional
Probab=97.20 E-value=0.002 Score=57.10 Aligned_cols=63 Identities=19% Similarity=0.125 Sum_probs=51.2
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD 154 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~ 154 (174)
.+.+.+||+.+|+++|.+.+++|+||..|+..++.++.+ +|.++. +.+..+..+|++
T Consensus 62 ~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~al~al~~--~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~ 139 (389)
T PRK05968 62 NPTVRAFEEMLAKLEGAEDARGFASGMAAISSTVLSFVE--PGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGRDEE 139 (389)
T ss_pred ChhHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCCCHH
Confidence 466999999999999999999999999999988888865 454432 345566777888
Q ss_pred HHHHHH
Q psy16850 155 IIKEAS 160 (174)
Q Consensus 155 ~Le~~L 160 (174)
+|++.+
T Consensus 140 ~l~~~i 145 (389)
T PRK05968 140 AVAKAL 145 (389)
T ss_pred HHHHhc
Confidence 888876
No 85
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=97.18 E-value=0.0038 Score=55.62 Aligned_cols=111 Identities=16% Similarity=0.070 Sum_probs=78.4
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY 122 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy 122 (174)
..+|+++|+|.+. .-||-+ ||+|.+|+.+.+++.+....++ . .++...+|-++|++.+. .+.+.+.+||-
T Consensus 38 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~~~-~---~~~~~~~la~~l~~~~p~~~~~v~f~~sGs 112 (423)
T PRK05964 38 LADGRELIDAISSWWVATHGHN-HPYIDQAIREQLDRLDHVIFAG-F---THEPAERLAQRLVALTPGGLDHVFFSDSGS 112 (423)
T ss_pred eCCCCEEEEcchhHHhccCCCC-CHHHHHHHHHHHhhCCCccccc-c---CCHHHHHHHHHHHHhCCCCCCEEEEeCCcH
Confidence 3689999999765 235554 8999999999998755322111 1 35677889999999884 57899999999
Q ss_pred HHHHHHHHHhc---------cc---------CCC--------------------CeeEEEEEEecCCC-----HHHHHHH
Q psy16850 123 VANDSTLFTLG---------KM---------IPY--------------------FTELIYFYRFLANT-----TDIIKEA 159 (174)
Q Consensus 123 ~aN~~~i~aL~---------~~---------~~g--------------------~~~s~~~~~f~HNd-----~~~Le~~ 159 (174)
.||-+.|..-- ++ ..| ......++.|+||| +++||++
T Consensus 113 eA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~ 192 (423)
T PRK05964 113 VAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEAL 192 (423)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHH
Confidence 99999888531 11 011 01113567899999 8999999
Q ss_pred HHHh
Q psy16850 160 SKEL 163 (174)
Q Consensus 160 L~~~ 163 (174)
+++.
T Consensus 193 l~~~ 196 (423)
T PRK05964 193 LEKH 196 (423)
T ss_pred HHhC
Confidence 9754
No 86
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=97.14 E-value=0.0043 Score=55.17 Aligned_cols=65 Identities=14% Similarity=-0.020 Sum_probs=51.7
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD 154 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~ 154 (174)
.+.+.+||++||+++|.+.+++++||..|+..++.++.+ +|+++. +.+..+.+.|++
T Consensus 64 ~p~~~~Le~~lA~l~G~~~~~~~~sG~~Ai~~~l~~~l~--~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e 141 (398)
T PRK07504 64 NPTVDMFEKRMCALEGAEDARATASGMAAVTAAILCQVK--AGDHVVAARALFGSCRYVVETLLPRYGIESTLVDGLDLD 141 (398)
T ss_pred CchHHHHHHHHHHHhCCCeeeEecCHHHHHHHHHHHHhC--CCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECCCCHH
Confidence 356899999999999999999999999999888877765 343332 355566678999
Q ss_pred HHHHHHHH
Q psy16850 155 IIKEASKE 162 (174)
Q Consensus 155 ~Le~~L~~ 162 (174)
++++.+..
T Consensus 142 ~l~~ai~~ 149 (398)
T PRK07504 142 NWEKAVRP 149 (398)
T ss_pred HHHHhcCc
Confidence 99988754
No 87
>PLN00144 acetylornithine transaminase
Probab=97.10 E-value=0.0039 Score=55.03 Aligned_cols=78 Identities=15% Similarity=0.073 Sum_probs=61.3
Q ss_pred ecCCeeEEEeccCcc---cCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHH
Q psy16850 48 TDSEKEVTVYCSNDY---LGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVA 124 (174)
Q Consensus 48 ~~~g~~~inf~SndY---LGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~a 124 (174)
..+|+++|+|.|.-. ||-+ ||+|.+|+.+.+++....+ .. ..+....+|-++|++..+.+.+.+.+||-.|
T Consensus 11 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~---~~--~~~~~~~~la~~l~~~~~~~~v~f~~sGseA 84 (382)
T PLN00144 11 DVEGKEYLDMAAGIAVNALGHG-DPDWVKAVAEQAGTLAHVS---NV--YHTIPQVELAKRLVASSFADRVFFCNSGTEA 84 (382)
T ss_pred eCCCCEEEECCcCHHhccCCCC-CHHHHHHHHHHHHhcCCcc---cc--ccCHHHHHHHHHHHhcCCCCeEEEeCCcHHH
Confidence 468999999987743 4544 8999999999998754321 11 2356788999999998888889999999999
Q ss_pred HHHHHHH
Q psy16850 125 NDSTLFT 131 (174)
Q Consensus 125 N~~~i~a 131 (174)
|-+.|..
T Consensus 85 ~e~Alkl 91 (382)
T PLN00144 85 NEAAIKF 91 (382)
T ss_pred HHHHHHH
Confidence 9988874
No 88
>PRK06767 methionine gamma-lyase; Provisional
Probab=97.10 E-value=0.0027 Score=56.07 Aligned_cols=43 Identities=28% Similarity=0.135 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCee
Q psy16850 97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTE 141 (174)
Q Consensus 97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~ 141 (174)
+...+||+.||+++|.+++++|+||..|+..++.++.+ +|.++
T Consensus 61 pt~~~Le~~lA~l~G~~~al~~~sG~~Ai~~~l~al~~--~Gd~V 103 (386)
T PRK06767 61 PTVKLFEERMAVLEGGEEALAFGSGMAAISATLIGFLK--AGDHI 103 (386)
T ss_pred cchHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEE
Confidence 55899999999999999999999999999999988875 45443
No 89
>PRK06105 aminotransferase; Provisional
Probab=97.06 E-value=0.0028 Score=57.51 Aligned_cols=81 Identities=16% Similarity=0.060 Sum_probs=63.4
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--CcEEEecchh
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--EAGLVFTSCY 122 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--e~al~f~sGy 122 (174)
..+|+++|+|.|. .=||-+ ||+|.+|+.+.+++.+..+..++ ..++...+|.++|++.+.. +.+.+.+||.
T Consensus 44 D~dG~~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~~~~~~~~~~---~~~~~~~~lae~L~~~~p~~~~~v~f~~SGs 119 (460)
T PRK06105 44 DDAGKRYIEGMAGLWSVALGFS-EQRLVEAAARQMKKLPFYHTFSH---KSHGPVIDLAEKLVAMAPVPMSKVFFTNSGS 119 (460)
T ss_pred ECCCCEEEEcchhHHhccCCCC-CHHHHHHHHHHHHhCCCeecccc---cCCHHHHHHHHHHHHhCCCCCCEEEEeCCcH
Confidence 4689999999876 345554 99999999999998764333322 2468889999999999853 5678889999
Q ss_pred HHHHHHHHHh
Q psy16850 123 VANDSTLFTL 132 (174)
Q Consensus 123 ~aN~~~i~aL 132 (174)
.||-+.|...
T Consensus 120 eAve~AlKla 129 (460)
T PRK06105 120 EANDTVVKLV 129 (460)
T ss_pred HHHHHHHHHH
Confidence 9999998863
No 90
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=97.05 E-value=0.0033 Score=55.57 Aligned_cols=108 Identities=19% Similarity=0.105 Sum_probs=78.6
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHH
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVA 124 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~a 124 (174)
..+|+++|+|.|. .=||- .||+|.+|+.+.+++.... ++.. .++...+|+++|+++.+.+.+++.+||-.|
T Consensus 20 D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~~~~~--~~~~---~~~~~~~la~~l~~~~~~~~v~~~~SGseA 93 (364)
T PRK04013 20 DSQGRRYLDLIAGIGVNVLGH-NHPEWVEEMSEQLEKLVVA--GPMF---EHEEKEEMLEELSKWVNYEYVYMGNSGTEA 93 (364)
T ss_pred ECCCCEEEEcccChhhccCCC-CCHHHHHHHHHHHHhcCCc--cCCc---CCHHHHHHHHHHHhhcCCCEEEEeCchHHH
Confidence 4689999999775 23454 3899999999999875422 2222 357889999999999998999999999999
Q ss_pred HHHHHHHhccc------------CCCCe------------------eEEEEEEecCCCHHHHHHHHH
Q psy16850 125 NDSTLFTLGKM------------IPYFT------------------ELIYFYRFLANTTDIIKEASK 161 (174)
Q Consensus 125 N~~~i~aL~~~------------~~g~~------------------~s~~~~~f~HNd~~~Le~~L~ 161 (174)
|-..|...... ..|.. ....+..++-||++.||+.+.
T Consensus 94 ~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~ 160 (364)
T PRK04013 94 VEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFNDVEAAKEAIT 160 (364)
T ss_pred HHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecCCCHHHHHHHhc
Confidence 99999866420 01110 002345677889999998885
No 91
>KOG1368|consensus
Probab=97.01 E-value=0.0014 Score=57.34 Aligned_cols=59 Identities=29% Similarity=0.375 Sum_probs=49.5
Q ss_pred CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcc
Q psy16850 68 HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGK 134 (174)
Q Consensus 68 ~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~ 134 (174)
..++++++.+|. +| --++|..+.-.+||+..|+++|+|++|+.+||.+.|+-.|-+-+.
T Consensus 35 TdeMr~am~eA~----vg----DdVyGeD~tt~rLE~~vA~l~GKEAgLFv~SGTmgNllaIm~Hc~ 93 (384)
T KOG1368|consen 35 TDEMRRAMAEAS----VG----DDVYGEDPTTNRLEQRVAELFGKEAGLFVPSGTMGNLLAIMVHCH 93 (384)
T ss_pred hHHHHHHHhhcc----cC----cccccCCccHHHHHHHHHHHhCccceeeecccccccHHHHHHHhc
Confidence 345666666653 44 578899999999999999999999999999999999988887775
No 92
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=96.98 E-value=0.014 Score=53.17 Aligned_cols=78 Identities=14% Similarity=0.092 Sum_probs=60.4
Q ss_pred CCeeEEEeccCc-ccCCCCCc---cchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHH
Q psy16850 50 SEKEVTVYCSND-YLGMSCHP---KVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN 125 (174)
Q Consensus 50 ~g~~~inf~Snd-YLGL~~~p---~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN 125 (174)
.|..+++|.+-+ |..|-.++ .+++++.+++.. |. ..++...-..+||+.+|+++|.+.+++.++|-.|+
T Consensus 34 ~g~~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~~~-g~------~~Y~~~~g~~~Lreaia~~~~~~~vv~t~ggt~A~ 106 (460)
T PRK13238 34 AGYNPFLLKSEDVFIDLLTDSGTGAMSDRQWAAMMR-GD------EAYAGSRSYYRLEDAVKDIFGYPYTIPTHQGRAAE 106 (460)
T ss_pred cCCCEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHh-CC------cccCCCCCHHHHHHHHHHHhCCCcEEECCCHHHHH
Confidence 356788888766 45777665 588888888852 32 11333345789999999999999999999999999
Q ss_pred HHHHHHhcc
Q psy16850 126 DSTLFTLGK 134 (174)
Q Consensus 126 ~~~i~aL~~ 134 (174)
..++.+|++
T Consensus 107 ~~~~~all~ 115 (460)
T PRK13238 107 QILFPVLIK 115 (460)
T ss_pred HHHHHHhCC
Confidence 999999976
No 93
>PRK02948 cysteine desulfurase; Provisional
Probab=96.96 E-value=0.0037 Score=54.23 Aligned_cols=66 Identities=18% Similarity=0.189 Sum_probs=47.1
Q ss_pred CccchHHHHHHHHHcCCCccccccccC-CchHHHHHHHHHHHHhCC-CcEEEecch-hHHHHHHHHHhc
Q psy16850 68 HPKVKSAVREALEKFGTGAGGTRNISG-NSLFHEKLEEDVARLHQK-EAGLVFTSC-YVANDSTLFTLG 133 (174)
Q Consensus 68 ~p~v~~a~~~al~~~G~gs~~Sr~~~G-~~~~~~~LE~~lA~~~g~-e~al~f~sG-y~aN~~~i~aL~ 133 (174)
.+.+++++.+.++.++...+++..... ...+++++++.+|+++|. ++.++|++| ..+|..++.++.
T Consensus 13 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~ 81 (381)
T PRK02948 13 SKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLL 81 (381)
T ss_pred CHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHH
Confidence 677888888888776544443332222 236799999999999984 457777666 899888887775
No 94
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=96.94 E-value=0.012 Score=50.50 Aligned_cols=75 Identities=17% Similarity=0.156 Sum_probs=50.0
Q ss_pred cCCeeEEEeccC-cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc-EEEe-cchhHH-
Q psy16850 49 DSEKEVTVYCSN-DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA-GLVF-TSCYVA- 124 (174)
Q Consensus 49 ~~g~~~inf~Sn-dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~-al~f-~sGy~a- 124 (174)
.+++.+|||++| +++| ..|++++++.+++..+.. ++ ...+.+|++.||+|+|.+. -+++ ++|-..
T Consensus 31 ~~~~~~i~l~~~~~~~~--~~~~~~~~~~~~~~~~~~--------y~-~~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~ 99 (361)
T PRK00950 31 IDPESIIKLGSNENPLG--PSPKAVEAIEKELSKIHR--------YP-EPDAPELREALSKYTGVPVENIIVGGDGMDEV 99 (361)
T ss_pred CCccceEEccCCCCCCC--CCHHHHHHHHHHHHhhcC--------CC-CCCHHHHHHHHHHHhCCCHHHEEEeCCCHHHH
Confidence 345689999999 5777 578899998887764321 11 1235999999999999643 3555 677543
Q ss_pred HHHHHHHhcc
Q psy16850 125 NDSTLFTLGK 134 (174)
Q Consensus 125 N~~~i~aL~~ 134 (174)
...++.++.+
T Consensus 100 i~~~~~~~~~ 109 (361)
T PRK00950 100 IDTLMRTFID 109 (361)
T ss_pred HHHHHHHhcC
Confidence 3445555543
No 95
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=96.94 E-value=0.0045 Score=55.66 Aligned_cols=64 Identities=23% Similarity=0.061 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHHH
Q psy16850 97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTDI 155 (174)
Q Consensus 97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~~ 155 (174)
+...+||+.||++.|.+.|++++||..|+..++.++.+ +|.++. +.++.+.-+|+++
T Consensus 63 p~~~~le~~lA~l~g~~~al~~~SG~~Ai~~al~all~--pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~ 140 (427)
T PRK05994 63 PTNAVLEERVAALEGGTAALAVASGHAAQFLVFHTLLQ--PGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADADDPAS 140 (427)
T ss_pred ccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhC--CCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCCCHHH
Confidence 56889999999999999999999999999999998875 454433 2445556678888
Q ss_pred HHHHHHH
Q psy16850 156 IKEASKE 162 (174)
Q Consensus 156 Le~~L~~ 162 (174)
|++.+..
T Consensus 141 l~~ai~~ 147 (427)
T PRK05994 141 FERAITP 147 (427)
T ss_pred HHHhcCc
Confidence 8888754
No 96
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=96.94 E-value=0.0082 Score=52.90 Aligned_cols=65 Identities=18% Similarity=0.066 Sum_probs=50.9
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD 154 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~ 154 (174)
.+...+||+.||+++|.+.+++++||..|+..++.++.+ +|.++. +.+..+.-+|++
T Consensus 53 ~p~~~~le~~la~l~g~~~~~~~~sG~~Ai~~al~al~~--~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~ 130 (380)
T TIGR01325 53 NPTVAAFEERIAALEGAERAVATATGMSAIQAALMTLLQ--AGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDPTDLN 130 (380)
T ss_pred CchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECCCCHH
Confidence 366999999999999999999999999999999998865 344332 244555667788
Q ss_pred HHHHHHHH
Q psy16850 155 IIKEASKE 162 (174)
Q Consensus 155 ~Le~~L~~ 162 (174)
+|++.++.
T Consensus 131 ~l~~~i~~ 138 (380)
T TIGR01325 131 AWEAAVKP 138 (380)
T ss_pred HHHHhcCC
Confidence 88776643
No 97
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=96.88 E-value=0.013 Score=53.04 Aligned_cols=109 Identities=16% Similarity=0.038 Sum_probs=76.1
Q ss_pred ecCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--CcEEEecchh
Q psy16850 48 TDSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--EAGLVFTSCY 122 (174)
Q Consensus 48 ~~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--e~al~f~sGy 122 (174)
..+|+++|+|.+.- -||-+ ||+|.+|+.+.+++. ... .-.++...+|-++|++.++. +.+.+.+||-
T Consensus 49 D~dG~~yiD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~-~~~------~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGs 120 (433)
T PRK00615 49 DSLGKTFIDFCGSWGSLIHGHS-HPKICDAIQQGAERG-TSY------GLTSEQEILFAEELFSYLGLEDHKIRFVSSGT 120 (433)
T ss_pred ECCCCEEEEcccchhccccCCC-CHHHHHHHHHHHHhC-CCC------CCCCHHHHHHHHHHHHhCCCCcCEEEEeCchH
Confidence 36799999997652 23433 999999999998763 211 12356778888888888754 5789999999
Q ss_pred HHHHHHHHHhcc---c---------CCCCe---e-------------------E---EEEEEecCCCHHHHHHHHHHhc
Q psy16850 123 VANDSTLFTLGK---M---------IPYFT---E-------------------L---IYFYRFLANTTDIIKEASKELQ 164 (174)
Q Consensus 123 ~aN~~~i~aL~~---~---------~~g~~---~-------------------s---~~~~~f~HNd~~~Le~~L~~~~ 164 (174)
.||-..|..--. + ..|.. + . .....|+|||+++||++|++..
T Consensus 121 EA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 199 (433)
T PRK00615 121 EATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLG 199 (433)
T ss_pred HHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcC
Confidence 999998874321 0 12211 0 0 1246789999999999998654
No 98
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=96.87 E-value=0.01 Score=53.60 Aligned_cols=79 Identities=16% Similarity=0.060 Sum_probs=60.4
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC---CcEEEecch
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK---EAGLVFTSC 121 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~---e~al~f~sG 121 (174)
..+|+++|+|.|. .-||-+ ||+|.+|+.+.+++....+.. ...++...+|.++|++.+.. +.+.+.+||
T Consensus 38 D~dG~~ylD~~~g~~~~~lGH~-~p~v~~Ai~~ql~~~~~~~~~----~~~~~~~~~lae~L~~~~p~~~~~~v~f~~SG 112 (445)
T PRK08593 38 DVDGKTYIDLLASASSQNVGHA-PPRVVEAIKAQADKFIHYTPA----YMYHEPLVRLAKKLCELAPGDFEKRVTFGLSG 112 (445)
T ss_pred eCCCCEEEECCccHHhhcCCCC-CHHHHHHHHHHHHhccCcccc----ccCCHHHHHHHHHHHHhCCCCCCCEEEECCch
Confidence 4689999999764 236764 999999999999886533221 12468889999999999853 356666999
Q ss_pred hHHHHHHHHH
Q psy16850 122 YVANDSTLFT 131 (174)
Q Consensus 122 y~aN~~~i~a 131 (174)
..||-+.|..
T Consensus 113 seA~e~Aikl 122 (445)
T PRK08593 113 SDANDGIIKF 122 (445)
T ss_pred HHHHHHHHHH
Confidence 9999999984
No 99
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=96.86 E-value=0.0065 Score=54.29 Aligned_cols=68 Identities=21% Similarity=0.170 Sum_probs=54.3
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD 154 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~ 154 (174)
.+....||+.||+.-|.++|++|+||..|-.+++-+|.+ +|.++. +.+..+.-.|++
T Consensus 54 nPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~--~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~ 131 (386)
T PF01053_consen 54 NPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLK--PGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDPTDLE 131 (386)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS---TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEESTTSHH
T ss_pred cccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcc--cCCceEecCCccCcchhhhhhhhcccCcEEEEeCchhHH
Confidence 478999999999999999999999999999888888876 566553 255666678899
Q ss_pred HHHHHHHHhcc
Q psy16850 155 IIKEASKELQE 165 (174)
Q Consensus 155 ~Le~~L~~~~~ 165 (174)
+|++.++....
T Consensus 132 ~l~~~l~~~t~ 142 (386)
T PF01053_consen 132 ALEAALRPNTK 142 (386)
T ss_dssp HHHHHHCTTEE
T ss_pred HHHhhccccce
Confidence 99998887544
No 100
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=96.86 E-value=0.015 Score=52.86 Aligned_cols=113 Identities=21% Similarity=0.104 Sum_probs=82.3
Q ss_pred eeecCCeeEEEeccCc-ccCCCC-CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC-CcEEEecchh
Q psy16850 46 EYTDSEKEVTVYCSND-YLGMSC-HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK-EAGLVFTSCY 122 (174)
Q Consensus 46 ~~~~~g~~~inf~Snd-YLGL~~-~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~-e~al~f~sGy 122 (174)
.+.+||.++|+|+-.. =+-|.+ ||.|++|+.+.+++ |++-+ ..+..-.+|-+.|.+.++. |..-+.+||.
T Consensus 47 l~DvDGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~-G~~fg------~Pte~Ei~~Aell~~~~p~~e~vrfvnSGT 119 (432)
T COG0001 47 LTDVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLER-GLSFG------APTELEVELAELLIERVPSIEKVRFVNSGT 119 (432)
T ss_pred EEeCCCCEeeehhccCcccccCCCCHHHHHHHHHHHHh-cCCCC------CCCHHHHHHHHHHHHhcCcccEEEEecchh
Confidence 3457899999987543 355555 99999999998865 43321 2345667777888888887 9999999999
Q ss_pred HHHHHHHHHhcc---c--------------------------------CCCCeeE--EEEEEecCCCHHHHHHHHHHhcc
Q psy16850 123 VANDSTLFTLGK---M--------------------------------IPYFTEL--IYFYRFLANTTDIIKEASKELQE 165 (174)
Q Consensus 123 ~aN~~~i~aL~~---~--------------------------------~~g~~~s--~~~~~f~HNd~~~Le~~L~~~~~ 165 (174)
.|+.++|-.=-+ . -+|+..+ .....++=||.+.||+++++.+.
T Consensus 120 EAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~ 199 (432)
T COG0001 120 EATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGD 199 (432)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcCC
Confidence 999999873221 0 1222222 46789999999999999999854
No 101
>PRK06460 hypothetical protein; Provisional
Probab=96.84 E-value=0.0058 Score=53.88 Aligned_cols=63 Identities=24% Similarity=0.243 Sum_probs=50.0
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD 154 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~ 154 (174)
.+.+.+||++||++.|.+.+++|+||..|+..++.++.+ +|+++. +.+..+++++.+
T Consensus 44 ~p~~~~L~~~lA~l~g~~~~v~~~sG~~ai~~~l~al~~--~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~~~~~ 121 (376)
T PRK06460 44 NPTVLELTKKIVELENAEMGVAFSSGMGAISTTALALLK--PGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGSDN 121 (376)
T ss_pred CccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC--CCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEECCCCHH
Confidence 478999999999999999999999999999999998876 343322 356677787766
Q ss_pred HHHHHH
Q psy16850 155 IIKEAS 160 (174)
Q Consensus 155 ~Le~~L 160 (174)
.++.++
T Consensus 122 ~l~~~~ 127 (376)
T PRK06460 122 IIEKAK 127 (376)
T ss_pred HHHHhc
Confidence 666544
No 102
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=96.84 E-value=0.0054 Score=54.28 Aligned_cols=64 Identities=22% Similarity=0.197 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHHH
Q psy16850 97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTDI 155 (174)
Q Consensus 97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~~ 155 (174)
+...+||+.||++.|.+.+++|+||..|+..++.+|.+ +|+++. +.+..+...|+++
T Consensus 61 p~~~~Le~~lA~~~g~~~~i~~~sG~~Ai~~~l~all~--~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~~d~e~ 138 (388)
T PRK07811 61 PTRTALEEQLAALEGGAYGRAFSSGMAATDCLLRAVLR--PGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDLSDLDA 138 (388)
T ss_pred ccHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHHHHhC--CCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCCCCHHH
Confidence 66899999999999999999999999999999999975 444332 2344455578888
Q ss_pred HHHHHHH
Q psy16850 156 IKEASKE 162 (174)
Q Consensus 156 Le~~L~~ 162 (174)
|++.+..
T Consensus 139 l~~~i~~ 145 (388)
T PRK07811 139 VRAAITP 145 (388)
T ss_pred HHHhcCc
Confidence 8887765
No 103
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=96.84 E-value=0.0051 Score=55.73 Aligned_cols=69 Identities=16% Similarity=0.018 Sum_probs=53.0
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecC-CCH
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLA-NTT 153 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~H-Nd~ 153 (174)
.+..++||+.||++.|.+.|++|+||..|+..++-+|.+ +|+++. +++..+.= .|+
T Consensus 60 nPtv~~lE~~la~leg~~~av~~~SG~aAi~~al~all~--~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~ 137 (432)
T PRK06702 60 NPTLAAFEQKLAELEGGVGAVATASGQAAIMLAVLNICS--SGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTA 137 (432)
T ss_pred CcHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhcC--CCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCH
Confidence 367999999999999999999999999999999988865 555443 12333332 388
Q ss_pred HHHHHHHHHhccc
Q psy16850 154 DIIKEASKELQED 166 (174)
Q Consensus 154 ~~Le~~L~~~~~~ 166 (174)
+.||+.++....-
T Consensus 138 ~~l~~~I~~~Tk~ 150 (432)
T PRK06702 138 DEIVALANDKTKL 150 (432)
T ss_pred HHHHHhCCcCCeE
Confidence 8999888765443
No 104
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=96.77 E-value=0.0072 Score=54.53 Aligned_cols=65 Identities=12% Similarity=0.063 Sum_probs=52.7
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD 154 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~ 154 (174)
.+...+||+.||++.|.+.|++++||..|...++.++.+ +|.++. +.++.+.-.|++
T Consensus 63 ~p~~~~Le~~lA~leg~~~al~~~sG~~Ai~~al~~ll~--~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e 140 (431)
T PRK08248 63 NPTTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIAS--AGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPSDPE 140 (431)
T ss_pred CchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECCCCHH
Confidence 356899999999999999999999999999999988765 333221 466677778999
Q ss_pred HHHHHHHH
Q psy16850 155 IIKEASKE 162 (174)
Q Consensus 155 ~Le~~L~~ 162 (174)
+|++.++.
T Consensus 141 ~l~~ai~~ 148 (431)
T PRK08248 141 NFEAAITD 148 (431)
T ss_pred HHHHhcCC
Confidence 99988865
No 105
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=96.76 E-value=0.0069 Score=51.66 Aligned_cols=75 Identities=17% Similarity=0.151 Sum_probs=53.4
Q ss_pred CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC-cEEEecchhH-HHHH
Q psy16850 50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-AGLVFTSCYV-ANDS 127 (174)
Q Consensus 50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-~al~f~sGy~-aN~~ 127 (174)
.+.++|||++|++ ++...|++++++.++++... + ++... ..+|++.+|++++.+ +.+++++|-. +...
T Consensus 17 ~~~~~i~l~~~~~-~~~~~~~~~~a~~~~~~~~~-~-------y~~~~-~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~ 86 (346)
T TIGR01141 17 GGKEVIKLNSNEN-PFGPPPKAKEALRAEADKLH-R-------YPDPD-PAELKQALADYYGVDPEQILLGNGSDEIIEL 86 (346)
T ss_pred CCCceEEccCCCC-CCCCCHHHHHHHHHhHHHhh-c-------CCCCC-HHHHHHHHHHHhCcChHHEEEcCCHHHHHHH
Confidence 3457999999999 99999999999998764321 1 11112 379999999999953 4577777765 4446
Q ss_pred HHHHhcc
Q psy16850 128 TLFTLGK 134 (174)
Q Consensus 128 ~i~aL~~ 134 (174)
++.+|..
T Consensus 87 ~~~~l~~ 93 (346)
T TIGR01141 87 LIRAFLE 93 (346)
T ss_pred HHHHhcC
Confidence 6666654
No 106
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=96.70 E-value=0.0088 Score=52.39 Aligned_cols=64 Identities=17% Similarity=0.130 Sum_probs=49.5
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD 154 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~ 154 (174)
.+.+.+||+.||++.|.+.+++++||..|...++. +.+ +|.++. +.+..+...|++
T Consensus 51 ~pt~~~le~~la~l~g~~~~~~~~sG~~ai~~~~~-ll~--~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~ 127 (366)
T PRK08247 51 NPTRGVLEQAIADLEGGDQGFACSSGMAAIQLVMS-LFR--SGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTASLK 127 (366)
T ss_pred CchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHH-HhC--CCCEEEEecCCcCcHHHHHHHHhhccCceEEEECCCCHH
Confidence 46799999999999999999999999998887765 443 343322 345566667899
Q ss_pred HHHHHHHH
Q psy16850 155 IIKEASKE 162 (174)
Q Consensus 155 ~Le~~L~~ 162 (174)
+|++.++.
T Consensus 128 ~l~~~i~~ 135 (366)
T PRK08247 128 AIEQAITP 135 (366)
T ss_pred HHHHhccc
Confidence 99888865
No 107
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=96.68 E-value=0.033 Score=49.92 Aligned_cols=110 Identities=14% Similarity=-0.007 Sum_probs=75.9
Q ss_pred ecCCeeEEEeccCcc-cCCCC-CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh-CCCcEEEecchhHH
Q psy16850 48 TDSEKEVTVYCSNDY-LGMSC-HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH-QKEAGLVFTSCYVA 124 (174)
Q Consensus 48 ~~~g~~~inf~SndY-LGL~~-~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~-g~e~al~f~sGy~a 124 (174)
..+|+++|+|.|.-. ..|.+ ||+|.+|+.+.+++... . .-.++...+|-++|++.+ +.+.+.+.+||-.|
T Consensus 49 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-~------~~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA 121 (428)
T PRK12389 49 DVDGNKYIDYLAAYGPIITGHAHPHITKAITEAAENGVL-Y------GTPTELEIEFAKMLKEAIPSLEKVRFVNSGTEA 121 (428)
T ss_pred eCCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCc-c------CCCCHHHHHHHHHHHHhCCCCcEEEEeCCHHHH
Confidence 367899999865521 22443 99999999999876322 1 124567788888888876 45788899999999
Q ss_pred HHHHHHHhcc---c---------CCC-----------------------Cee--EEEEEEecCCCHHHHHHHHHHhc
Q psy16850 125 NDSTLFTLGK---M---------IPY-----------------------FTE--LIYFYRFLANTTDIIKEASKELQ 164 (174)
Q Consensus 125 N~~~i~aL~~---~---------~~g-----------------------~~~--s~~~~~f~HNd~~~Le~~L~~~~ 164 (174)
|-..|..-.. + ..| ... ...+.+++|||++.||+.|++..
T Consensus 122 ~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 198 (428)
T PRK12389 122 VMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWG 198 (428)
T ss_pred HHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcC
Confidence 9998873321 0 011 100 12567899999999999997654
No 108
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=96.66 E-value=0.0051 Score=53.87 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=55.1
Q ss_pred cccCCCC-CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcc
Q psy16850 61 DYLGMSC-HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGK 134 (174)
Q Consensus 61 dYLGL~~-~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~ 134 (174)
-.||-+. .|++++++.++++.| .+...+.+++|+.+|+++|.+.++++++|..|+..++.++..
T Consensus 18 t~~g~s~~~~~v~~a~~~~~~~~----------~~~~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al~~ 82 (363)
T TIGR01437 18 TILGVSTVSDEVADAQKRGAQNY----------FEIKELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAVIT 82 (363)
T ss_pred ecCCCCCCCHHHHHHHHHHHhcC----------CCHHHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHHhc
Confidence 5788886 888999998887654 245688999999999999999999999999999999999865
No 109
>PRK07050 cystathionine beta-lyase; Provisional
Probab=96.65 E-value=0.0088 Score=53.16 Aligned_cols=64 Identities=17% Similarity=0.013 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHHH
Q psy16850 97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTDI 155 (174)
Q Consensus 97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~~ 155 (174)
+..++||+.+|++.|.+.+++++||..|+..++.+|++ +|++.. +.+..+...+.++
T Consensus 65 pt~~~Le~~lA~l~g~~~~l~~~sgt~Ai~~~l~al~~--~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~~~~~ 142 (394)
T PRK07050 65 PTSLALAQRLAEIEGGRHALLQPSGLAAISLVYFGLVK--AGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPLIGAG 142 (394)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHhC--CCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECCCCHHH
Confidence 45799999999999999999999999999999999876 454432 3555666666777
Q ss_pred HHHHHHH
Q psy16850 156 IKEASKE 162 (174)
Q Consensus 156 Le~~L~~ 162 (174)
|++.++.
T Consensus 143 l~~~i~~ 149 (394)
T PRK07050 143 IADLIQP 149 (394)
T ss_pred HHHhcCC
Confidence 7777653
No 110
>PRK07049 methionine gamma-lyase; Validated
Probab=96.62 E-value=0.012 Score=52.86 Aligned_cols=66 Identities=21% Similarity=0.176 Sum_probs=51.4
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEec-CCCH
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFL-ANTT 153 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~-HNd~ 153 (174)
.+.+..||+.||++.|.+++++++||..|...++.++++ +|.+.. +.++.|. +.|+
T Consensus 82 ~Pt~~~Le~~lA~leg~~~~iv~~sG~~Ai~~~l~al~~--~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~~~d~ 159 (427)
T PRK07049 82 HPNSEIVEDRLAVYEGAESAALFSSGMSAIATTLLAFVR--PGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFADGLSE 159 (427)
T ss_pred CcCHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhC--CCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEeCCCCH
Confidence 356899999999999999999999999999999999876 333221 2344553 6788
Q ss_pred HHHHHHHHHh
Q psy16850 154 DIIKEASKEL 163 (174)
Q Consensus 154 ~~Le~~L~~~ 163 (174)
++|++.+.+.
T Consensus 160 ~~l~~~l~~~ 169 (427)
T PRK07049 160 AAIGAAAEAA 169 (427)
T ss_pred HHHHHHHHhh
Confidence 9998888643
No 111
>PLN02509 cystathionine beta-lyase
Probab=96.61 E-value=0.0091 Score=54.58 Aligned_cols=63 Identities=22% Similarity=0.150 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHHH
Q psy16850 97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTDI 155 (174)
Q Consensus 97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~~ 155 (174)
+.+++||+.+|++.|.+.+++|+||..| +.++.++.+ +|+++. +.++.+.++|+++
T Consensus 133 pt~~aLE~~lA~leg~e~ai~~~SG~aA-i~~il~ll~--~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e~ 209 (464)
T PLN02509 133 PTRDALESLLAKLDKADRAFCFTSGMAA-LSAVTHLIK--NGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDE 209 (464)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcHHHH-HHHHHHHhC--CCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCCCCHHH
Confidence 5799999999999999999999999865 555556654 343322 4667788999999
Q ss_pred HHHHHHH
Q psy16850 156 IKEASKE 162 (174)
Q Consensus 156 Le~~L~~ 162 (174)
|++.+..
T Consensus 210 l~~ai~~ 216 (464)
T PLN02509 210 VAAAIGP 216 (464)
T ss_pred HHHhCCc
Confidence 9888753
No 112
>KOG1401|consensus
Probab=96.57 E-value=0.016 Score=52.23 Aligned_cols=112 Identities=21% Similarity=0.213 Sum_probs=84.8
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh---CCCcEEEecch
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH---QKEAGLVFTSC 121 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~---g~e~al~f~sG 121 (174)
-.+|+++|+|+|- .-+|=+ ||+|.+++.+...++|..+.+ +++-...+||+.|.+.. ..+.+.+++||
T Consensus 52 D~~g~EyiD~~ssw~~~~~Gha-npev~ral~~q~~k~~hs~~~-----~~t~eav~l~~~l~~~~~~~~~~rvff~nsG 125 (433)
T KOG1401|consen 52 DPDGKEYIDFTSSWAVTILGHA-NPEVARALAEQAKKLGHSSNG-----YFTLEAVELEEVLSAVLGKGSAERVFFCNSG 125 (433)
T ss_pred cCCcceeeeeccceeccccCCC-CHHHHHHHHHHHhhheeccCc-----cccHHHHHHHHHHHhcccCCCccEEEEecCC
Confidence 3688999999884 445555 999999999988888865432 23445889999999999 77888999999
Q ss_pred hHHHHHHHHHhccc------------------------------------CCCCeeEEEEEEecCCCHHHHHHHHHHhcc
Q psy16850 122 YVANDSTLFTLGKM------------------------------------IPYFTELIYFYRFLANTTDIIKEASKELQE 165 (174)
Q Consensus 122 y~aN~~~i~aL~~~------------------------------------~~g~~~s~~~~~f~HNd~~~Le~~L~~~~~ 165 (174)
..||-++|..=.+. +|..+.+-.+..+.-||+++|++.++....
T Consensus 126 TeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~ 205 (433)
T KOG1401|consen 126 TEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKG 205 (433)
T ss_pred cHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhCCC
Confidence 99999988643220 111222336778889999999999998873
No 113
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=96.52 E-value=0.026 Score=47.86 Aligned_cols=39 Identities=18% Similarity=0.070 Sum_probs=35.8
Q ss_pred CchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhc
Q psy16850 95 NSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLG 133 (174)
Q Consensus 95 ~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~ 133 (174)
..+.+.++|+.||+++|.+.+++++||..|+..++.++.
T Consensus 16 ~~~~~~~~~~~la~~~~~~~~~~~~sgt~al~~~l~~l~ 54 (352)
T cd00616 16 LGPKVREFEKAFAEYLGVKYAVAVSSGTAALHLALRALG 54 (352)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcC
Confidence 447899999999999999999999999999999999883
No 114
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=96.51 E-value=0.028 Score=48.37 Aligned_cols=73 Identities=19% Similarity=0.202 Sum_probs=52.9
Q ss_pred eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC-cEEEecchhHHHHHHH-
Q psy16850 52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-AGLVFTSCYVANDSTL- 129 (174)
Q Consensus 52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-~al~f~sGy~aN~~~i- 129 (174)
..+|+|++|++. +..+|.+++++.++++..+.. ...-+.+|.+.+|++++.+ +.+++++|....+..+
T Consensus 29 ~~~i~l~~n~~~-~~~~~~v~~a~~~~~~~~~~~---------p~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~ 98 (359)
T PRK03158 29 EKIVKLASNENP-YGPSPKVKEAIAAHLDELALY---------PDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMIS 98 (359)
T ss_pred CceEEecCCCCC-CCCCHHHHHHHHHHHHHhhcC---------CCCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHH
Confidence 368999999876 777999999998887653311 1123788999999999853 4688888877766544
Q ss_pred HHhcc
Q psy16850 130 FTLGK 134 (174)
Q Consensus 130 ~aL~~ 134 (174)
.++.+
T Consensus 99 ~~~~~ 103 (359)
T PRK03158 99 RALLN 103 (359)
T ss_pred HHHhC
Confidence 45544
No 115
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=96.46 E-value=0.015 Score=50.74 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=35.9
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhc
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLG 133 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~ 133 (174)
-+..+++|+++|+|+|.+.|+.++||..|...++.+|.
T Consensus 24 g~~~~~fE~~~a~~~g~~~~~~~~sgt~Al~~al~~l~ 61 (363)
T PF01041_consen 24 GPYVEEFEKEFAEYFGVKYAVAVSSGTSALHLALRALG 61 (363)
T ss_dssp SHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCChhHHHHHHHHhcC
Confidence 47899999999999999999999999999999999975
No 116
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=96.46 E-value=0.015 Score=52.54 Aligned_cols=66 Identities=20% Similarity=-0.022 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHHH
Q psy16850 97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTDI 155 (174)
Q Consensus 97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~~ 155 (174)
+...+||+.||++.|.+.|++++||..|+..++.+|.+ +|+++. +.+..+.=+|+++
T Consensus 64 p~~~~le~~lA~l~g~~~av~~sSGt~Al~~al~~ll~--~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~~~ 141 (433)
T PRK08134 64 PTVAVLEERVAALEGGVGAIATASGQAALHLAIATLMG--AGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPGDIDG 141 (433)
T ss_pred hHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC--CCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCCCHHH
Confidence 77999999999999999999999999999988887754 444332 2344444468888
Q ss_pred HHHHHHHhc
Q psy16850 156 IKEASKELQ 164 (174)
Q Consensus 156 Le~~L~~~~ 164 (174)
||+.|....
T Consensus 142 l~~~i~~~T 150 (433)
T PRK08134 142 WRAAIRPNT 150 (433)
T ss_pred HHHhcCCCC
Confidence 888886533
No 117
>PRK07671 cystathionine beta-lyase; Provisional
Probab=96.42 E-value=0.017 Score=51.02 Aligned_cols=64 Identities=22% Similarity=0.144 Sum_probs=48.5
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD 154 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~ 154 (174)
.+...+||+.||++.|.+.+++++||..|...++. +.+ +|.++. +.++.+...|++
T Consensus 49 ~p~~~~Le~~lA~l~g~~~~~~~~sG~aai~~~~~-~l~--~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~ 125 (377)
T PRK07671 49 NPTRAALEELIAVLEGGHAGFAFGSGMAAITAVMM-LFS--SGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTSNLE 125 (377)
T ss_pred ChHHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHH-HhC--CCCEEEECCCccchHHHHHHHHHhcCCeEEEEECCCCHH
Confidence 46789999999999999999999999987776664 443 233221 456667778888
Q ss_pred HHHHHHHH
Q psy16850 155 IIKEASKE 162 (174)
Q Consensus 155 ~Le~~L~~ 162 (174)
+|++.++.
T Consensus 126 ~l~~ai~~ 133 (377)
T PRK07671 126 EVEEAIRP 133 (377)
T ss_pred HHHHhcCC
Confidence 88888764
No 118
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=96.42 E-value=0.017 Score=52.36 Aligned_cols=66 Identities=17% Similarity=0.102 Sum_probs=50.7
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEec-CCCH
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFL-ANTT 153 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~-HNd~ 153 (174)
.+..++||+.||++.|.+.+++|+||..|+..++.++.+ +|.++. +.+..+. -+|+
T Consensus 68 ~pt~~~le~~la~l~g~~~~v~fsSG~~Ai~~al~~ll~--~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~ 145 (437)
T PRK05613 68 NPTVEALENRIASLEGGVHAVAFASGQAAETAAILNLAG--AGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVENPDDP 145 (437)
T ss_pred ChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcC--CCCEEEECCCccHHHHHHHHHHHHhcCeEEEEECCCCCH
Confidence 477899999999999999999999999999988888765 344332 2444443 4578
Q ss_pred HHHHHHHHHh
Q psy16850 154 DIIKEASKEL 163 (174)
Q Consensus 154 ~~Le~~L~~~ 163 (174)
++|++.|+..
T Consensus 146 e~l~~~l~~~ 155 (437)
T PRK05613 146 ESWQAAVQPN 155 (437)
T ss_pred HHHHHhCCcc
Confidence 8888877654
No 119
>PRK07046 aminotransferase; Validated
Probab=96.36 E-value=0.023 Score=51.65 Aligned_cols=107 Identities=16% Similarity=-0.049 Sum_probs=77.6
Q ss_pred ecCCeeEEEeccCc-ccCCCC-CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHH
Q psy16850 48 TDSEKEVTVYCSND-YLGMSC-HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN 125 (174)
Q Consensus 48 ~~~g~~~inf~Snd-YLGL~~-~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN 125 (174)
..+|+++|+|.+.- -+.|.+ ||+|.+|+.+.+++ |+.. ...++...+|.++|++.++.+.+.+++||-.||
T Consensus 71 D~DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~-~~~~------~~~~~~~~~lAe~l~~~~~~~~v~F~nSGtEA~ 143 (453)
T PRK07046 71 DVDGHRYDDFCLGDTGAMFGHSPAPVARALAEQARR-GLTT------MLPSEDAAWVGEELARRFGLPYWQVATTATDAN 143 (453)
T ss_pred eCCCCEEEEecccccccccCCCCHHHHHHHHHHHHh-CCCC------CCCCHHHHHHHHHHHHHhCCCEEEEECCHHHHH
Confidence 46889999987552 334443 89999999999876 3221 234678889999999999999999999999999
Q ss_pred HHHHHHhcc---c---------CCCC----------------------e--eEEEEEEecCCCHHHHHHHHH
Q psy16850 126 DSTLFTLGK---M---------IPYF----------------------T--ELIYFYRFLANTTDIIKEASK 161 (174)
Q Consensus 126 ~~~i~aL~~---~---------~~g~----------------------~--~s~~~~~f~HNd~~~Le~~L~ 161 (174)
...|..--. + ..|. . ....+..+++||.+.||+++.
T Consensus 144 e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~ 215 (453)
T PRK07046 144 RFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEFNDLAALEAALA 215 (453)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCCCCHHHHHHHhC
Confidence 998874221 0 1111 0 012457789999999999984
No 120
>PRK07480 putative aminotransferase; Validated
Probab=96.31 E-value=0.021 Score=51.86 Aligned_cols=81 Identities=11% Similarity=0.035 Sum_probs=62.2
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY 122 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy 122 (174)
..+|+++|+|.|. .=||-+ ||+|.+|+.+.+++....+. .....++...+|.++|++.++ .+.+.+.+||.
T Consensus 46 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~~~~~~---~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGs 121 (456)
T PRK07480 46 DSEGNKILDGMAGLWCVNVGYG-RKELADAAARQMRELPYYNT---FFKTTHPPAIELAAKLAEVAPPGFNHVFFTNSGS 121 (456)
T ss_pred eCCCCEEEEccchHHHhcCCCC-CHHHHHHHHHHHHhcCCccc---ccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcH
Confidence 3679999999764 224544 99999999999987653321 222357889999999999984 46899999999
Q ss_pred HHHHHHHHHh
Q psy16850 123 VANDSTLFTL 132 (174)
Q Consensus 123 ~aN~~~i~aL 132 (174)
.||-+.|..-
T Consensus 122 eA~e~AlklA 131 (456)
T PRK07480 122 EANDTVLRMV 131 (456)
T ss_pred HHHHHHHHHH
Confidence 9999998743
No 121
>PRK09028 cystathionine beta-lyase; Provisional
Probab=96.30 E-value=0.024 Score=50.78 Aligned_cols=64 Identities=16% Similarity=0.070 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHHH
Q psy16850 97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTDI 155 (174)
Q Consensus 97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~~ 155 (174)
+.+.+||+.||++.|.+.+++|+||..|...++.+|.+ +|+++. +.+..+...|.+.
T Consensus 61 pt~~~Le~~iA~le~~~~~~~~~sG~~Ai~~~l~all~--~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~~e~ 138 (394)
T PRK09028 61 PTHFAFQAAIVELEGGAGTALYPSGAAAISNALLSFLK--AGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPMIGEG 138 (394)
T ss_pred chHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCCCHHH
Confidence 45789999999999999999999999999999988875 454432 3445566777788
Q ss_pred HHHHHHH
Q psy16850 156 IKEASKE 162 (174)
Q Consensus 156 Le~~L~~ 162 (174)
|++.+..
T Consensus 139 l~~~l~~ 145 (394)
T PRK09028 139 IRELIRP 145 (394)
T ss_pred HHHhcCc
Confidence 8877754
No 122
>PRK07503 methionine gamma-lyase; Provisional
Probab=96.28 E-value=0.024 Score=50.47 Aligned_cols=64 Identities=23% Similarity=0.177 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHHH
Q psy16850 97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTDI 155 (174)
Q Consensus 97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~~ 155 (174)
+...+||+.||+++|.+.+++|+||..|...++.++.+ +|++.. +.+....=.|++.
T Consensus 65 p~~~~le~~lA~l~g~~~~i~~~sG~~Al~~~l~~ll~--~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~ 142 (403)
T PRK07503 65 PTLALLEQRMASLEGGEAAVALASGMGAITATLWTLLR--PGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAA 142 (403)
T ss_pred chHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHcC--CCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCCCHHH
Confidence 56899999999999999999999999999888888865 444322 3444444567888
Q ss_pred HHHHHHH
Q psy16850 156 IKEASKE 162 (174)
Q Consensus 156 Le~~L~~ 162 (174)
|++.++.
T Consensus 143 l~~~i~~ 149 (403)
T PRK07503 143 LKAAISD 149 (403)
T ss_pred HHHhcCc
Confidence 8877754
No 123
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=96.27 E-value=0.024 Score=49.97 Aligned_cols=63 Identities=19% Similarity=0.104 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHHH
Q psy16850 97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTDI 155 (174)
Q Consensus 97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~~ 155 (174)
+..++||+.||+++|.+.+++|+||..|...++. +.+ +|.++. +.++...-.|+++
T Consensus 47 p~~~~le~~la~l~g~~~~l~~~sG~~al~~~l~-ll~--~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~~~ 123 (378)
T TIGR01329 47 PTRTALESLLAKLDKADRAFAFSSGMAALDVITR-LLN--NGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTTDLDK 123 (378)
T ss_pred hHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-HhC--CCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCCCHHH
Confidence 4589999999999999999999999987766665 544 343322 3455666678888
Q ss_pred HHHHHHH
Q psy16850 156 IKEASKE 162 (174)
Q Consensus 156 Le~~L~~ 162 (174)
+|+.++.
T Consensus 124 le~~i~~ 130 (378)
T TIGR01329 124 VKAALGP 130 (378)
T ss_pred HHHhcCc
Confidence 8887753
No 124
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=96.24 E-value=0.049 Score=47.49 Aligned_cols=64 Identities=14% Similarity=-0.026 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHh-cccCCCCeeE-----------------EEEEE------ecCCC
Q psy16850 97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTL-GKMIPYFTEL-----------------IYFYR------FLANT 152 (174)
Q Consensus 97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL-~~~~~g~~~s-----------------~~~~~------f~HNd 152 (174)
+...+||+++|+|+|.+.+++++||..|...++.+| .+ +|..+. ++++. -...|
T Consensus 29 ~~~~~le~~la~~~g~~~~v~~~sgt~al~~~l~al~~~--~Gd~Viv~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d 106 (380)
T TIGR03588 29 PTVPAFEEALAEYVGAKYAVAFNSATSALHIACLALGVG--PGDRVWTTPITFVATANCALYCGAKVDFVDIDPDTGNID 106 (380)
T ss_pred hhHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHHHcCCC--CCCEEEeCCcchHHHHHHHHHcCCEEEEEecCCCcCCcC
Confidence 558999999999999999999999999999999888 33 333322 12221 12468
Q ss_pred HHHHHHHHHH
Q psy16850 153 TDIIKEASKE 162 (174)
Q Consensus 153 ~~~Le~~L~~ 162 (174)
+++||+.+.+
T Consensus 107 ~~~l~~~i~~ 116 (380)
T TIGR03588 107 EDALEKKLAA 116 (380)
T ss_pred HHHHHHHhhc
Confidence 9999999874
No 125
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=96.24 E-value=0.033 Score=50.48 Aligned_cols=77 Identities=17% Similarity=0.033 Sum_probs=56.0
Q ss_pred CeeEEEeccCc-ccCCCCC---ccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHH
Q psy16850 51 EKEVTVYCSND-YLGMSCH---PKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAND 126 (174)
Q Consensus 51 g~~~inf~Snd-YLGL~~~---p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~ 126 (174)
|..+++|.+-| |+.|-++ ..+.+++.+++..=-.+ ++...-..+||+.+|+++|.+.+++.++|-.|+.
T Consensus 10 g~n~~~l~~~~v~iDlltds~t~ams~~~~~a~~~gd~~-------Y~~~~g~~~Leeaia~~~g~~~vv~t~~Gt~Al~ 82 (431)
T cd00617 10 GYNVFLLRSEDVYIDLLTDSGTGAMSDYQWAAMMLGDEA-------YAGSKSFYDLEDAVQDLFGFKHIIPTHQGRGAEN 82 (431)
T ss_pred CCCEEeCCCCCcCCCCCCCCCcHHHHHHHHHHHHhCCCc-------cCCCCCHHHHHHHHHHHHCCCeEEEcCCHHHHHH
Confidence 44455665555 5666665 37777777777521122 2223336799999999999999999999999999
Q ss_pred HHHHHhcc
Q psy16850 127 STLFTLGK 134 (174)
Q Consensus 127 ~~i~aL~~ 134 (174)
.++.++++
T Consensus 83 la~~al~~ 90 (431)
T cd00617 83 ILFSILLK 90 (431)
T ss_pred HHHHHhCC
Confidence 99999976
No 126
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=96.10 E-value=0.051 Score=49.67 Aligned_cols=80 Identities=21% Similarity=0.191 Sum_probs=63.5
Q ss_pred ecCCeeEEEeccC-cccCCCC-CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC---CcEEEecchh
Q psy16850 48 TDSEKEVTVYCSN-DYLGMSC-HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK---EAGLVFTSCY 122 (174)
Q Consensus 48 ~~~g~~~inf~Sn-dYLGL~~-~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~---e~al~f~sGy 122 (174)
-++|+.+|+|.|. +=+.+.+ ||+|++|+.+-++++. ...++.+. .+...++-++|.+.+.. ..+++.+||-
T Consensus 52 DvdG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~--h~~~~~~~--~e~~v~~ae~L~~~~p~~~~~~~~f~~sGa 127 (447)
T COG0160 52 DVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLN--HTHTRDLY--YEPYVELAEKLTALAPGSGLKKVFFGNSGA 127 (447)
T ss_pred eCCCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhh--cccCCccc--chhHHHHHHHHHHhCCcccCCeEEecCCcH
Confidence 4689999999985 6777776 9999999999888866 22334443 37888888888887764 5689999999
Q ss_pred HHHHHHHHH
Q psy16850 123 VANDSTLFT 131 (174)
Q Consensus 123 ~aN~~~i~a 131 (174)
.||=..|..
T Consensus 128 eA~E~AiKi 136 (447)
T COG0160 128 EAVEAAIKI 136 (447)
T ss_pred HHHHHHHHH
Confidence 999999873
No 127
>PRK06148 hypothetical protein; Provisional
Probab=96.09 E-value=0.025 Score=56.26 Aligned_cols=78 Identities=15% Similarity=0.096 Sum_probs=62.1
Q ss_pred ecCCeeEEEeccCcccCCCC-CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--CcEEEecchhHH
Q psy16850 48 TDSEKEVTVYCSNDYLGMSC-HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--EAGLVFTSCYVA 124 (174)
Q Consensus 48 ~~~g~~~inf~SndYLGL~~-~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--e~al~f~sGy~a 124 (174)
..+|+++|+|.++ +..|.+ ||+|.+|+.+.+++..+.+ +. .++...+|-++|++.+.. +.+.+.+||-.|
T Consensus 620 D~dG~~ylD~~~g-~~~lGH~hp~v~~Ai~~q~~~l~~~~---~~---~~~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA 692 (1013)
T PRK06148 620 DNRGRAYLDCFNN-VCHVGHAHPRVVAAAARQAARLNTNT---RY---LHDAIVAYAERLTATLPDGLTVAFFVNSGSEA 692 (1013)
T ss_pred ECCCCEEEEcccC-hhhcCCCCHHHHHHHHHHHhhcCCcC---Cc---CCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHH
Confidence 4689999999987 577776 9999999999998754322 22 357788888999998753 678999999999
Q ss_pred HHHHHHHh
Q psy16850 125 NDSTLFTL 132 (174)
Q Consensus 125 N~~~i~aL 132 (174)
|-+.|..-
T Consensus 693 ~e~AlklA 700 (1013)
T PRK06148 693 NSLALRLA 700 (1013)
T ss_pred HHHHHHHH
Confidence 99998743
No 128
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=96.07 E-value=0.033 Score=50.19 Aligned_cols=78 Identities=21% Similarity=0.183 Sum_probs=60.3
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC---CcEEEecch
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK---EAGLVFTSC 121 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~---e~al~f~sG 121 (174)
..+|+++|+|.|. .=||-+ ||+|.+|+.+.+++... .. ...+..+...+|-++|++.+.. +.+.+++||
T Consensus 52 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~-~~---~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sG 126 (443)
T PRK06058 52 DVDGNRLIDLGSGIAVTSVGNS-APRVVEAVREQVARFTH-TC---FMVTPYEGYVAVAEQLNRLTPGDHEKRSALFNSG 126 (443)
T ss_pred eCCCCEEEEcCcchhhhccCCC-CHHHHHHHHHHHHhccC-cc---ccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCc
Confidence 4689999999774 345633 99999999999987532 11 1223567888999999998752 578999999
Q ss_pred hHHHHHHHH
Q psy16850 122 YVANDSTLF 130 (174)
Q Consensus 122 y~aN~~~i~ 130 (174)
-.||-+.|.
T Consensus 127 seA~e~Alk 135 (443)
T PRK06058 127 AEAVENAVK 135 (443)
T ss_pred HHHHHHHHH
Confidence 999999988
No 129
>PRK06225 aspartate aminotransferase; Provisional
Probab=96.04 E-value=0.09 Score=45.70 Aligned_cols=78 Identities=13% Similarity=0.017 Sum_probs=56.3
Q ss_pred CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC--cEEEecchhHHHHH
Q psy16850 50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE--AGLVFTSCYVANDS 127 (174)
Q Consensus 50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e--~al~f~sGy~aN~~ 127 (174)
++.++|+|+.|+- .+..+|++.+++.+++...+.. .++...-+.+|.+.+|+++|.+ ..++.++|..++..
T Consensus 26 ~~~~~i~l~~~~~-~~~~~~~~~~a~~~~~~~~~~~------~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~ 98 (380)
T PRK06225 26 KDKEMIWMGQNTN-HLGPHEEVREAMIRCIEEGEYC------KYPPPEGFPELRELILKDLGLDDDEALITAGATESLYL 98 (380)
T ss_pred hcCCeEEccCCCC-CCCCCHHHHHHHHHHHhcCCCC------CCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHH
Confidence 3457899998875 3556899999998887642211 1233334788999999999864 47777888888888
Q ss_pred HHHHhcc
Q psy16850 128 TLFTLGK 134 (174)
Q Consensus 128 ~i~aL~~ 134 (174)
++.++++
T Consensus 99 ~~~~~~~ 105 (380)
T PRK06225 99 VMRAFLS 105 (380)
T ss_pred HHHHhcC
Confidence 8888765
No 130
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=95.96 E-value=0.054 Score=46.25 Aligned_cols=89 Identities=21% Similarity=0.091 Sum_probs=58.3
Q ss_pred CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc---EEEecchhHHHHHHHHHhcccCCCCeeE--
Q psy16850 68 HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA---GLVFTSCYVANDSTLFTLGKMIPYFTEL-- 142 (174)
Q Consensus 68 ~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~---al~f~sGy~aN~~~i~aL~~~~~g~~~s-- 142 (174)
.+.+.+++.+++.++-.+. |-. +....++++|+.+|+++|.+. +++++||..++..++.++.+ +|....
T Consensus 7 ~~~~~~~v~~a~~~~~~~~---~~~-~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~~--~g~~vl~~ 80 (356)
T cd06451 7 PSNVPPRVLKAMNRPMLGH---RSP-EFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLLE--PGDKVLVG 80 (356)
T ss_pred CcCCCHHHHHHhCCCccCC---CCH-HHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhCC--CCCEEEEe
Confidence 4455567777765433221 111 234678999999999999732 56778889999999999875 232221
Q ss_pred -----------------EEEEEe-----cCCCHHHHHHHHHH
Q psy16850 143 -----------------IYFYRF-----LANTTDIIKEASKE 162 (174)
Q Consensus 143 -----------------~~~~~f-----~HNd~~~Le~~L~~ 162 (174)
++++.. .+.|.++|++.++.
T Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~ 122 (356)
T cd06451 81 VNGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQ 122 (356)
T ss_pred cCCchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhc
Confidence 122332 37889999998875
No 131
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=95.95 E-value=0.065 Score=46.92 Aligned_cols=68 Identities=15% Similarity=0.100 Sum_probs=48.9
Q ss_pred cCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHh-cccCCCCeeE-----------------EEEEEec-----
Q psy16850 93 SGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTL-GKMIPYFTEL-----------------IYFYRFL----- 149 (174)
Q Consensus 93 ~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL-~~~~~g~~~s-----------------~~~~~f~----- 149 (174)
+|..+..+++|+.+|+++|.+.++++++|..|...++.++ .+ +|.++. +.++.+.
T Consensus 27 ~g~~~~~~~~e~~la~~~g~~~~v~~~sgt~al~~~l~~~~~~--~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d~~~ 104 (375)
T PRK11706 27 CGDGGFTRRCQQWLEQRFGSAKVLLTPSCTAALEMAALLLDIQ--PGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRPDT 104 (375)
T ss_pred cCCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhCCC--CCCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCc
Confidence 4666889999999999999999999999999965555444 33 344332 1333332
Q ss_pred -CCCHHHHHHHHHH
Q psy16850 150 -ANTTDIIKEASKE 162 (174)
Q Consensus 150 -HNd~~~Le~~L~~ 162 (174)
+.|+++||+.+..
T Consensus 105 ~~~d~~~le~~i~~ 118 (375)
T PRK11706 105 MNIDETLIEAAITP 118 (375)
T ss_pred CCcCHHHHHHhcCC
Confidence 5689999988764
No 132
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=95.91 E-value=0.045 Score=49.47 Aligned_cols=79 Identities=15% Similarity=0.077 Sum_probs=60.1
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh--CCCcEEEecchh
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH--QKEAGLVFTSCY 122 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~--g~e~al~f~sGy 122 (174)
..+|+++|+|.|. .-||-+ ||+|.+|+.+.+++...++. . .-.++...+|-++|++.+ +.+.+.+.+||-
T Consensus 42 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~l~~~~~---~-~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGs 116 (442)
T PRK13360 42 THDGRRVLDGTAGLWCVNAGHG-RPEIVEAVRAQAGELDYAPA---F-QMGHPKAFELANRIAEIAPGGLNHVFFTNSGS 116 (442)
T ss_pred eCCCCEEEECchhHHHhccCCC-CHHHHHHHHHHHHhCCCccc---C-CcCCHHHHHHHHHHHHhCCCCCCEEEEeCCcH
Confidence 3679999999765 224443 99999999999988654432 1 223577788999999987 357889999999
Q ss_pred HHHHHHHHH
Q psy16850 123 VANDSTLFT 131 (174)
Q Consensus 123 ~aN~~~i~a 131 (174)
.||-+.+..
T Consensus 117 eA~e~Alkl 125 (442)
T PRK13360 117 ESVDTALKI 125 (442)
T ss_pred HHHHHHHHH
Confidence 999998874
No 133
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=95.89 E-value=0.03 Score=48.16 Aligned_cols=68 Identities=21% Similarity=0.147 Sum_probs=47.9
Q ss_pred CCccchHHHHHHHHHcC--CCccccccccCCchHHHHHHHHHHHHhCCCc---EEEecchhHHHHHHHHHhcc
Q psy16850 67 CHPKVKSAVREALEKFG--TGAGGTRNISGNSLFHEKLEEDVARLHQKEA---GLVFTSCYVANDSTLFTLGK 134 (174)
Q Consensus 67 ~~p~v~~a~~~al~~~G--~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~---al~f~sGy~aN~~~i~aL~~ 134 (174)
..+.+++++.+.++.++ .+.+..+...+....+.++++.||+++|.++ .++.++|..++..++.++.+
T Consensus 12 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~ 84 (376)
T TIGR01977 12 KPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLLK 84 (376)
T ss_pred CCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhccC
Confidence 34678999999988875 2333333333345789999999999999764 34556777787778887754
No 134
>PRK09082 methionine aminotransferase; Validated
Probab=95.86 E-value=0.16 Score=44.31 Aligned_cols=105 Identities=12% Similarity=0.052 Sum_probs=66.9
Q ss_pred eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC----cEEEe-cchhHHHH
Q psy16850 52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE----AGLVF-TSCYVAND 126 (174)
Q Consensus 52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e----~al~f-~sGy~aN~ 126 (174)
..+|+|+.++ ..+..+|.+.+++.++++..-.+. ....|...+.+.+.+.+++++|.. ..+++ +.|..+..
T Consensus 30 ~~~i~l~~g~-~~~~~~~~~~~~~~~~~~~~~~~Y---~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~ 105 (386)
T PRK09082 30 HGAINLSQGF-PDFDGPPYLVEALAYAMAAGHNQY---PPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALF 105 (386)
T ss_pred CCEEEecCCC-CCCCCCHHHHHHHHHHHHcCCCCC---CCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHH
Confidence 4578998853 445557888888888765321111 113577788888888888888862 24555 54577888
Q ss_pred HHHHHhcccCCCCeeE-----------------EEEEEecCC------CHHHHHHHHHH
Q psy16850 127 STLFTLGKMIPYFTEL-----------------IYFYRFLAN------TTDIIKEASKE 162 (174)
Q Consensus 127 ~~i~aL~~~~~g~~~s-----------------~~~~~f~HN------d~~~Le~~L~~ 162 (174)
.++.++++ +|.... ++++.++.. |+++|++.++.
T Consensus 106 ~~~~~~~~--~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~ 162 (386)
T PRK09082 106 AAILALVR--PGDEVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAISP 162 (386)
T ss_pred HHHHHHcC--CCCEEEEeCCCchhhHHHHHHcCCEEEEEecCcccccCCHHHHHHhcCc
Confidence 88888865 443222 245555543 67888877754
No 135
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=95.85 E-value=0.042 Score=48.60 Aligned_cols=42 Identities=21% Similarity=0.075 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCee
Q psy16850 97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTE 141 (174)
Q Consensus 97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~ 141 (174)
+...+||++||++.|.+.|++|+||..|..+++. +.+ +|.++
T Consensus 50 p~~~~Le~~la~l~g~~~al~~~SG~~Al~~~l~-~l~--pGd~V 91 (380)
T PRK06176 50 PTRFALEELIADLEGGVKGFAFASGLAGIHAVFS-LFQ--SGDHV 91 (380)
T ss_pred hhHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHH-HcC--CCCEE
Confidence 5689999999999999999999999998887775 444 45443
No 136
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=95.81 E-value=0.054 Score=48.29 Aligned_cols=64 Identities=13% Similarity=-0.017 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHHH
Q psy16850 97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTDI 155 (174)
Q Consensus 97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~~ 155 (174)
+...+||+.||++.|.+.++++++|..|...++.++.+ +|.++. +.+..+...|+++
T Consensus 53 pt~~~Le~~lA~leg~e~ivvt~gg~~Ai~~~l~all~--~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~ 130 (388)
T PRK08861 53 PNRGLLEQTLSELESGKGAVVTNCGTSALNLWVSALLG--PDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQSDAAA 130 (388)
T ss_pred chHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcC--CCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECCCCHHH
Confidence 57999999999999999999999999999999999865 444333 2334445567888
Q ss_pred HHHHHHH
Q psy16850 156 IKEASKE 162 (174)
Q Consensus 156 Le~~L~~ 162 (174)
+++.+..
T Consensus 131 l~~~i~~ 137 (388)
T PRK08861 131 LDAALAK 137 (388)
T ss_pred HHHhcCc
Confidence 8877754
No 137
>PRK07481 hypothetical protein; Provisional
Probab=95.78 E-value=0.049 Score=49.31 Aligned_cols=80 Identities=11% Similarity=0.013 Sum_probs=59.9
Q ss_pred ecCCeeEEEecc---CcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC---CCcEEEecch
Q psy16850 48 TDSEKEVTVYCS---NDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ---KEAGLVFTSC 121 (174)
Q Consensus 48 ~~~g~~~inf~S---ndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g---~e~al~f~sG 121 (174)
..+|+++|+|.| +.-||-+ ||+|.+|+.+.+++....+ +...-.++.-.+|.++|++.++ .+.+.+.+||
T Consensus 38 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~~~~---~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~sG 113 (449)
T PRK07481 38 DIDGKKLLDGVGGLWNVNVGHN-REEVKEAIVRQLDELEYYS---TFDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGG 113 (449)
T ss_pred eCCCCEEEECchhHHhhcCCCC-CHHHHHHHHHHHHhcccee---cccccCCHHHHHHHHHHHHhcCCCCCCEEEEcCch
Confidence 368999999976 3346654 8999999999998754321 1111246788899999999883 5678889999
Q ss_pred hHHHHHHHHH
Q psy16850 122 YVANDSTLFT 131 (174)
Q Consensus 122 y~aN~~~i~a 131 (174)
-.||-+.|..
T Consensus 114 sEAve~Alkl 123 (449)
T PRK07481 114 SDSVETALKL 123 (449)
T ss_pred HHHHHHHHHH
Confidence 9999988874
No 138
>PLN02271 serine hydroxymethyltransferase
Probab=95.75 E-value=0.05 Score=51.23 Aligned_cols=98 Identities=19% Similarity=0.221 Sum_probs=64.5
Q ss_pred ccchHHHHHHH-HHcCCCccccccccCCchHHHHHHH----HHHHHhCCCcE-----EEecchhHHHHHHHHHhcccCCC
Q psy16850 69 PKVKSAVREAL-EKFGTGAGGTRNISGNSLFHEKLEE----DVARLHQKEAG-----LVFTSCYVANDSTLFTLGKMIPY 138 (174)
Q Consensus 69 p~v~~a~~~al-~~~G~gs~~Sr~~~G~~~~~~~LE~----~lA~~~g~e~a-----l~f~sGy~aN~~~i~aL~~~~~g 138 (174)
|.++++.-..+ .+|.-|..|.|...|+..+ .++|. ...+.||.+.+ +---||..||.+++.+|.+ ||
T Consensus 162 ~av~~algS~ltnkYaEG~pG~Ryy~G~~~i-D~iE~la~era~~lF~~~~~~~gaNVQp~SGs~AN~aV~~ALl~--PG 238 (586)
T PLN02271 162 RAVMEALGSHLTNKYSEGMPGARYYTGNQYI-DQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLL--PG 238 (586)
T ss_pred HHHHHHhcCcccccCCCCCCCCcCCCCChhH-HHHHHHHHHHHHHHhCCcccccccceeeccHHHHHHHHHHHhcC--CC
Confidence 33444443322 4688899999998886544 47753 34456675542 3344999999999999986 22
Q ss_pred Cee-----------------------E-----EEEEEecCC------CHHHHHHHHHHhcccccc
Q psy16850 139 FTE-----------------------L-----IYFYRFLAN------TTDIIKEASKELQEDMID 169 (174)
Q Consensus 139 ~~~-----------------------s-----~~~~~f~HN------d~~~Le~~L~~~~~~~~~ 169 (174)
+++ + ..+..|++| |+++||+++.+..+..|-
T Consensus 239 D~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~rPKLII 303 (586)
T PLN02271 239 DRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILI 303 (586)
T ss_pred CEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhhhcCCeEEE
Confidence 211 1 245577787 999999987776665543
No 139
>PRK07678 aminotransferase; Validated
Probab=95.71 E-value=0.065 Score=48.52 Aligned_cols=78 Identities=15% Similarity=0.012 Sum_probs=58.2
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC-cEEEecchhH
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-AGLVFTSCYV 123 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-~al~f~sGy~ 123 (174)
..+|+++|+|.|. .-||-+ ||+|.+|+.+.+++....+ + .. .++...+|.++|+++++.. .+.+.+||-.
T Consensus 43 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~---~-~~-~~~~~~~lae~l~~~~~~~~~v~f~~sGse 116 (451)
T PRK07678 43 DIQGNRYLDGMSGLWCVNVGYG-RKELAEAAYEQLKTLSYFP---L-TQ-SHEPAIKLAEKLNEWLGGEYVIFFSNSGSE 116 (451)
T ss_pred eCCCCEEEEccccHHhhcCCCC-CHHHHHHHHHHHHhcCccc---c-cc-CCHHHHHHHHHHHHhCCCCCEEEEeCCcHH
Confidence 4689999999764 236644 8999999999988754322 1 12 3567789999999998654 5666689999
Q ss_pred HHHHHHHH
Q psy16850 124 ANDSTLFT 131 (174)
Q Consensus 124 aN~~~i~a 131 (174)
||-+.|..
T Consensus 117 A~e~Alkl 124 (451)
T PRK07678 117 ANETAFKI 124 (451)
T ss_pred HHHHHHHH
Confidence 99998874
No 140
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=95.69 E-value=0.043 Score=50.36 Aligned_cols=39 Identities=18% Similarity=-0.130 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcc
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGK 134 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~ 134 (174)
.+-+.+||+.+|+++|++.++.++||-+|+..++.+.++
T Consensus 77 d~s~~~LE~~vAe~lG~e~aV~v~sGTaAl~ll~~l~v~ 115 (460)
T PRK13237 77 SRNFYHLEETVQEYYGFKHVVPTHQGRGAENLLSRIAIK 115 (460)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCC
Confidence 345789999999999999999999999998876555544
No 141
>PRK07482 hypothetical protein; Provisional
Probab=95.65 E-value=0.058 Score=49.02 Aligned_cols=81 Identities=10% Similarity=-0.006 Sum_probs=60.8
Q ss_pred ecCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850 48 TDSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY 122 (174)
Q Consensus 48 ~~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy 122 (174)
..+|+++|+|.|.- -||-+ ||+|.+|+.+.+++....... ..-.++...+|-++|++... .+.+.+.+||-
T Consensus 46 D~dG~~ylD~~sg~~~~~lGh~-~p~v~~Av~~q~~~~~~~~~~---~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGS 121 (461)
T PRK07482 46 DAQGRRYIDAFAGLYCVNVGYG-RTEVAEAIAEQAKELAYYHTY---VGHGTEASITLSKRIIDRAPAGMSKVYYGLSGS 121 (461)
T ss_pred ECCCCEEEEcccchhhhcCCCC-CHHHHHHHHHHHHhcCccccc---cccCCHHHHHHHHHHHHhCCCCcCEEEEeCchH
Confidence 36899999998763 34533 999999999999875322211 11236788899999999884 57888999999
Q ss_pred HHHHHHHHHh
Q psy16850 123 VANDSTLFTL 132 (174)
Q Consensus 123 ~aN~~~i~aL 132 (174)
.||-+.|..-
T Consensus 122 EAve~AlKlA 131 (461)
T PRK07482 122 DANETQIKLV 131 (461)
T ss_pred HHHHHHHHHH
Confidence 9999988854
No 142
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=95.60 E-value=0.059 Score=45.54 Aligned_cols=67 Identities=15% Similarity=0.034 Sum_probs=49.4
Q ss_pred CchHHHHHHHHHHHHhCCCcEEE-ecchhHHHHHHHHHhcccCCCCeeEE-----------------EEEEe--------
Q psy16850 95 NSLFHEKLEEDVARLHQKEAGLV-FTSCYVANDSTLFTLGKMIPYFTELI-----------------YFYRF-------- 148 (174)
Q Consensus 95 ~~~~~~~LE~~lA~~~g~e~al~-f~sGy~aN~~~i~aL~~~~~g~~~s~-----------------~~~~f-------- 148 (174)
...++.++|+.+|+++|.+.+++ .+++..+|.+++.++++ +|.++.+ ..+..
T Consensus 57 ~~g~i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al~~--~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~ 134 (294)
T cd00615 57 PTGPIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVCG--PGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNPYY 134 (294)
T ss_pred CChHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHcCC--CCCEEEEeCCchHHHHHHHHHCCCEEEEecCccCccc
Confidence 45689999999999999999987 45557899999999876 4443321 11111
Q ss_pred ---cCCCHHHHHHHHHHh
Q psy16850 149 ---LANTTDIIKEASKEL 163 (174)
Q Consensus 149 ---~HNd~~~Le~~L~~~ 163 (174)
.+.|+++||+.+++.
T Consensus 135 ~~~~~i~~~~l~~~l~~~ 152 (294)
T cd00615 135 GIAGGIPPETFKKALIEH 152 (294)
T ss_pred CcCCCCCHHHHHHHHHhC
Confidence 267899999999864
No 143
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=95.60 E-value=0.06 Score=47.29 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=42.2
Q ss_pred ccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHh
Q psy16850 69 PKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTL 132 (174)
Q Consensus 69 p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL 132 (174)
++-++++.++++. | .... .+...+||+.||+++|.+.++.++||..|+..++.++
T Consensus 14 ~~e~~~~~~~l~~-~------~~~~--g~~~~~le~~la~~~g~~~~v~~~sgt~al~lal~al 68 (379)
T PRK11658 14 DEELAAVKEVLRS-G------WITT--GPKNQALEQAFCQLTGNQHAIAVSSATAGMHITLMAL 68 (379)
T ss_pred HHHHHHHHHHHHc-C------CccC--CHhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHc
Confidence 4446666665542 1 1112 3568999999999999999999999999999999888
No 144
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=95.58 E-value=0.05 Score=49.09 Aligned_cols=110 Identities=18% Similarity=0.149 Sum_probs=81.3
Q ss_pred ecCCeeEEEeccC-cccCCCC-CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC-CCcEEEecchhHH
Q psy16850 48 TDSEKEVTVYCSN-DYLGMSC-HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ-KEAGLVFTSCYVA 124 (174)
Q Consensus 48 ~~~g~~~inf~Sn-dYLGL~~-~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g-~e~al~f~sGy~a 124 (174)
..+|+++|||.+. --..|.+ ||+|++|+++-+++....| +++ +.+...+|-++|++..+ .+.+++++||-.|
T Consensus 38 D~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~s---n~~--~~~~~~~la~~L~~~s~~~d~vff~NSGaEA 112 (404)
T COG4992 38 DQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVS---NLF--YNEPQAELAEKLVELSPFADRVFFCNSGAEA 112 (404)
T ss_pred CCCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhcc---ccc--CChHHHHHHHHHHhhCccccEEEEcCCcHHH
Confidence 3579999998764 2233443 9999999999888866443 343 46889999999999996 9999999999999
Q ss_pred HHHHHHHhccc---------------CCCC------------------eeEEEEEEecCCCHHHHHHHHHH
Q psy16850 125 NDSTLFTLGKM---------------IPYF------------------TELIYFYRFLANTTDIIKEASKE 162 (174)
Q Consensus 125 N~~~i~aL~~~---------------~~g~------------------~~s~~~~~f~HNd~~~Le~~L~~ 162 (174)
|=+.|..--.- ..|- ++.-.+...+-||.+.|+..+..
T Consensus 113 ~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai~~ 183 (404)
T COG4992 113 NEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAIDE 183 (404)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCCCHHHHHHHhcc
Confidence 99998753210 1111 11124567788999999999987
No 145
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=95.47 E-value=0.082 Score=47.31 Aligned_cols=80 Identities=15% Similarity=0.105 Sum_probs=57.0
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----CCC-cEEEe-
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----QKE-AGLVF- 118 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g~e-~al~f- 118 (174)
..+|+++|+|.|. .-||-+ ||+|.+|+.+.+++.+.-.+. .-.++...+|-++|++.+ +.+ .+.+|
T Consensus 35 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~~~----~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~ 109 (425)
T PRK09264 35 DEDGKEYIDFFAGAGALNYGHN-NPVLKQALIDYLQRDGITHGL----DMHTTAKREFLETFEETILKPRGLDYKVQFTG 109 (425)
T ss_pred eCCCCEeeecccchhhccCCCC-CHHHHHHHHHHHHhccccccc----ccCcHHHHHHHHHHHHhhcCCcCCCceEEEeC
Confidence 4689999999776 335553 999999999999886643321 123567788888888864 233 34454
Q ss_pred cchhHHHHHHHHHh
Q psy16850 119 TSCYVANDSTLFTL 132 (174)
Q Consensus 119 ~sGy~aN~~~i~aL 132 (174)
+||-.||-+.|..-
T Consensus 110 ~sGseA~e~AlklA 123 (425)
T PRK09264 110 PTGTNAVEAALKLA 123 (425)
T ss_pred CCHHHHHHHHHHHH
Confidence 69999999998754
No 146
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=95.44 E-value=0.08 Score=48.12 Aligned_cols=79 Identities=16% Similarity=0.070 Sum_probs=60.2
Q ss_pred ecCCeeEEEeccCcc---cCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--CcEEEecchh
Q psy16850 48 TDSEKEVTVYCSNDY---LGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--EAGLVFTSCY 122 (174)
Q Consensus 48 ~~~g~~~inf~SndY---LGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--e~al~f~sGy 122 (174)
..+|+++|+|.|.-. ||- .||+|.+|+.+.+++...++. . .-.++...+|.++|++.+.. +.+.+.+||-
T Consensus 52 D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~l~~~~~---~-~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGs 126 (460)
T PRK06916 52 DVNGNEYYDGVSSIWLNVHGH-QVPELDEAIREQLNKIAHSTL---L-GLANVPSILLAEKLIEVVPEGLKKVFYSDSGA 126 (460)
T ss_pred eCCCCEEEEcchhHHHhhcCC-CCHHHHHHHHHHHHhCCCccc---c-ccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcH
Confidence 367999999987633 443 399999999999988653322 1 11357788999999999753 6789999999
Q ss_pred HHHHHHHHH
Q psy16850 123 VANDSTLFT 131 (174)
Q Consensus 123 ~aN~~~i~a 131 (174)
.||-..|..
T Consensus 127 eAve~Alkl 135 (460)
T PRK06916 127 TAVEIAIKM 135 (460)
T ss_pred HHHHHHHHH
Confidence 999998874
No 147
>PRK07483 hypothetical protein; Provisional
Probab=95.41 E-value=0.088 Score=47.61 Aligned_cols=79 Identities=16% Similarity=0.163 Sum_probs=59.7
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY 122 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy 122 (174)
..+|+++|+|.|. .=||-+ ||+|.+++.+.+++...-..+ . -.++...+|.++|++... .+.+.+.+||-
T Consensus 26 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~av~~ql~~~~~~~~~---~-~~~~~~~~lae~L~~~~p~~~~~v~f~~sGs 100 (443)
T PRK07483 26 DATGKRYLDASGGAAVSCLGHS-HPRVIAAIHAQIDRLAYAHTS---F-FTTEPAEALADRLVAAAPAGLEHVYFVSGGS 100 (443)
T ss_pred eCCCCEEEEcCccHhhhccCCC-CHHHHHHHHHHHHhccCcccc---c-cCCHHHHHHHHHHHHhCCCCCCEEEEcCCcH
Confidence 4689999999873 335544 899999999999875421111 1 135778899999999874 57899999999
Q ss_pred HHHHHHHHH
Q psy16850 123 VANDSTLFT 131 (174)
Q Consensus 123 ~aN~~~i~a 131 (174)
.||-..|..
T Consensus 101 EAve~Alkl 109 (443)
T PRK07483 101 EAVEAALKL 109 (443)
T ss_pred HHHHHHHHH
Confidence 999998874
No 148
>PRK06434 cystathionine gamma-lyase; Validated
Probab=95.40 E-value=0.035 Score=49.49 Aligned_cols=45 Identities=29% Similarity=0.191 Sum_probs=39.4
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL 142 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s 142 (174)
.+..++||+.+|++.|.+.|++|+||..|...++.+|.+ +|+++.
T Consensus 63 ~P~~~~lE~~la~leg~~~av~~sSG~aAi~~al~all~--~GD~Vl 107 (384)
T PRK06434 63 NPTVQAFEEKYAVLENAEHALSFSSGMGAITSAILSLIK--KGKRIL 107 (384)
T ss_pred ChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC--CCCEEE
Confidence 478899999999999999999999999999988888865 666654
No 149
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=95.38 E-value=0.093 Score=47.39 Aligned_cols=79 Identities=19% Similarity=0.101 Sum_probs=58.2
Q ss_pred ecCCeeEEEeccCcc-cCCCC-CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC---CCcEEEecchh
Q psy16850 48 TDSEKEVTVYCSNDY-LGMSC-HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ---KEAGLVFTSCY 122 (174)
Q Consensus 48 ~~~g~~~inf~SndY-LGL~~-~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g---~e~al~f~sGy 122 (174)
..+|+++|+|.|.-. +.|.+ ||+|.+|+.+.+++....+. +.. .++...+|-++|++.+. .+.+.+.+||-
T Consensus 50 D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~-~~~---~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGs 125 (441)
T PRK05769 50 DVDGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYSL-TDF---YYEPAVELAERLVEIAPGGFEKKVFFTNSGT 125 (441)
T ss_pred eCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccCccC-ccc---CCHHHHHHHHHHHHhCCCCCCCEEEECCchH
Confidence 468999999987743 22333 89999999999987543211 111 24677888888888875 46788899999
Q ss_pred HHHHHHHH
Q psy16850 123 VANDSTLF 130 (174)
Q Consensus 123 ~aN~~~i~ 130 (174)
.||-..|.
T Consensus 126 EA~e~Alk 133 (441)
T PRK05769 126 ESNEAAIK 133 (441)
T ss_pred HHHHHHHH
Confidence 99998886
No 150
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=95.36 E-value=0.085 Score=48.09 Aligned_cols=80 Identities=10% Similarity=0.032 Sum_probs=60.9
Q ss_pred ecCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850 48 TDSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY 122 (174)
Q Consensus 48 ~~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy 122 (174)
..+|+++|+|.|.- -||-+ ||+|.+|+.+.+++....+.. . -.++...+|-++|++.+. .+.+.+.+||-
T Consensus 43 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~l~~~~~~-~---~~~~~~~~lae~L~~~~p~~~~~v~f~~sGs 117 (466)
T PRK07030 43 DFEGKRYLDAVSSWWVNVFGHA-NPRINQRIKDQVDQLEHVILA-G---FSHEPVIELSERLVKITPPGLSRCFYADNGS 117 (466)
T ss_pred ECCCCEEEEcchhHHhhcCCCC-CHHHHHHHHHHHHhcCCcccc-c---cCCHHHHHHHHHHHHhCCCCcCEEEEeCCcH
Confidence 46899999997763 24444 899999999999886533321 1 135788899999999873 46788999999
Q ss_pred HHHHHHHHHh
Q psy16850 123 VANDSTLFTL 132 (174)
Q Consensus 123 ~aN~~~i~aL 132 (174)
.||-..+..-
T Consensus 118 EAve~AlKlA 127 (466)
T PRK07030 118 SAIEVALKMS 127 (466)
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 151
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=95.35 E-value=0.098 Score=47.20 Aligned_cols=79 Identities=19% Similarity=0.139 Sum_probs=59.3
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC---CcEEEecch
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK---EAGLVFTSC 121 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~---e~al~f~sG 121 (174)
..+|+++|+|.|. .-||-+ ||+|.+|+.+.+++....+ .... .++...+|-++|++.+.. +.+.+.+||
T Consensus 50 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~-~~~~---~~~~~~~la~~L~~~~p~~~~~~v~f~~sG 124 (451)
T PRK06918 50 DVDGNQYIDFAGAIGTINVGHS-HPKVKEALHKQVDQYIHTG-FNVM---MYEPYIELAEKLAALAPGSFDKKVLFLNSG 124 (451)
T ss_pred eCCCCEEEEcCCchhhcCCCCC-CHHHHHHHHHHHHhccCcc-cccc---ccHHHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 3689999999765 224533 9999999999998754221 1111 357788999999999853 578999999
Q ss_pred hHHHHHHHHH
Q psy16850 122 YVANDSTLFT 131 (174)
Q Consensus 122 y~aN~~~i~a 131 (174)
-.||-+.|..
T Consensus 125 seA~e~Alkl 134 (451)
T PRK06918 125 AEAVENAVKI 134 (451)
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 152
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.34 E-value=0.056 Score=48.34 Aligned_cols=65 Identities=17% Similarity=0.131 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE----------------------EEEE--EecCCC
Q psy16850 97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL----------------------IYFY--RFLANT 152 (174)
Q Consensus 97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s----------------------~~~~--~f~HNd 152 (174)
+..+++|+++|+|+|.+.|+.++||..|..-.+-+|. +.||+.+- +++. .|. =|
T Consensus 34 ~~v~~FE~~~ae~~G~k~ava~~sgT~AL~laL~al~-ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~~T~n-id 111 (374)
T COG0399 34 PFVRRFEQAFAEYLGVKYAVAVSSGTAALHLALLALA-IGPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDPDTLN-ID 111 (374)
T ss_pred hHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhcC-CCCCCEEEecCCchHHHHHHHHHcCCeEEEEecCCcccC-CC
Confidence 6689999999999999999999999999999999776 44666432 1222 333 48
Q ss_pred HHHHHHHHHHh
Q psy16850 153 TDIIKEASKEL 163 (174)
Q Consensus 153 ~~~Le~~L~~~ 163 (174)
++.||..+...
T Consensus 112 ~~~ie~aIt~~ 122 (374)
T COG0399 112 PDLIEAAITPR 122 (374)
T ss_pred HHHHHHHcccC
Confidence 99999888775
No 153
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=95.32 E-value=0.1 Score=46.61 Aligned_cols=66 Identities=17% Similarity=0.105 Sum_probs=48.7
Q ss_pred CchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeEE---------------------EEEEecCCCH
Q psy16850 95 NSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTELI---------------------YFYRFLANTT 153 (174)
Q Consensus 95 ~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s~---------------------~~~~f~HNd~ 153 (174)
..+..++||+.||++.|.+.+++++||..|...++.++.+ +|.++.+ .+....=.|+
T Consensus 58 ~~p~~~~Le~~lA~l~g~~~~v~~~sG~~Ai~~~l~all~--pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~d~ 135 (405)
T PRK08776 58 GNPTRDLLGEALAELEGGAGGVITATGMGAINLVLNALLQ--PGDTLVVPHDAYGGSWRLFNALAKKGHFALITADLTDP 135 (405)
T ss_pred CChHHHHHHHHHHHHhCCCceEEEcCHHHHHHHHHHHHhC--CCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECCCCH
Confidence 3466799999999999999999999999888888888865 4554431 2233333577
Q ss_pred HHHHHHHHH
Q psy16850 154 DIIKEASKE 162 (174)
Q Consensus 154 ~~Le~~L~~ 162 (174)
++|++.++.
T Consensus 136 ~~l~~~i~~ 144 (405)
T PRK08776 136 RSLADALAQ 144 (405)
T ss_pred HHHHHhcCc
Confidence 788777754
No 154
>PRK06541 hypothetical protein; Provisional
Probab=95.30 E-value=0.1 Score=47.44 Aligned_cols=79 Identities=15% Similarity=-0.045 Sum_probs=61.2
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY 122 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy 122 (174)
..+|+++|+|.|. .-||-+ ||+|.+|+.+.+++.+.... . ...++...+|-++|++... .+.+.+.+||-
T Consensus 48 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~Av~~q~~~~~~~~~-~---~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGs 122 (460)
T PRK06541 48 DDRGKRYLDGLAGLFVVQVGHG-RAELAEAAAKQAGTLAFFPL-W---SYAHPPAIELAERLAALAPGDLNRVFFTTGGS 122 (460)
T ss_pred eCCCCEEEECCccHHhccCCCC-CHHHHHHHHHHHhhCcCccc-c---ccCCHHHHHHHHHHHHhCCCCcCEEEEcCCcH
Confidence 3679999999774 347766 89999999999988654322 1 1245778889999999874 36889999999
Q ss_pred HHHHHHHHH
Q psy16850 123 VANDSTLFT 131 (174)
Q Consensus 123 ~aN~~~i~a 131 (174)
.||-+.|..
T Consensus 123 eAve~Alkl 131 (460)
T PRK06541 123 EAVESAWKL 131 (460)
T ss_pred HHHHHHHHH
Confidence 999988874
No 155
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=95.22 E-value=0.12 Score=45.92 Aligned_cols=64 Identities=11% Similarity=0.005 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHHH
Q psy16850 97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTDI 155 (174)
Q Consensus 97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~~ 155 (174)
+...+||+.||++.|.+.+++++||..|...++.++.+ +|+++. +.+..+...|+++
T Consensus 52 pt~~~L~~~lA~l~g~~~~i~~~sg~~Ai~~~l~~l~~--~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~ 129 (386)
T PRK08045 52 PTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLK--PGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQA 129 (386)
T ss_pred ccHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcC--CCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeCCCCHHH
Confidence 56899999999999999999999999999999988875 444332 1333344567888
Q ss_pred HHHHHHH
Q psy16850 156 IKEASKE 162 (174)
Q Consensus 156 Le~~L~~ 162 (174)
|++.++.
T Consensus 130 l~~~l~~ 136 (386)
T PRK08045 130 LRAALAE 136 (386)
T ss_pred HHHhccc
Confidence 8877754
No 156
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=95.21 E-value=0.12 Score=47.02 Aligned_cols=79 Identities=20% Similarity=0.121 Sum_probs=59.0
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--CcEEEecchh
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--EAGLVFTSCY 122 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--e~al~f~sGy 122 (174)
..+|+++|+|.|. .-||-+ ||+|.+|+.+.+++....+.+ ..+++...+|-++|++..+. +.+.+.+||-
T Consensus 49 D~dG~~ylD~~~g~~~~~lGh~-~p~i~~Ai~~ql~~~~~~~~~----~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGs 123 (457)
T PRK05639 49 DVDGNVFIDFLAGAAAASTGYS-HPKLVKAVQEQVALIQHSMIG----YTHSERAIRVAEKLAEISPIENPKVLFGLSGS 123 (457)
T ss_pred eCCCCEEEECCcCHHhhccCCC-CHHHHHHHHHHHHhccccccC----ccCCHHHHHHHHHHHhhCCCCcCEEEEeCchH
Confidence 4689999999875 234433 999999999999875422111 11346778899999998753 5799999999
Q ss_pred HHHHHHHHH
Q psy16850 123 VANDSTLFT 131 (174)
Q Consensus 123 ~aN~~~i~a 131 (174)
.||-+.|..
T Consensus 124 EA~e~Alkl 132 (457)
T PRK05639 124 DAVDMAIKV 132 (457)
T ss_pred HHHHHHHHH
Confidence 999998874
No 157
>PRK12414 putative aminotransferase; Provisional
Probab=95.19 E-value=0.34 Score=42.35 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=54.8
Q ss_pred CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC-----CcEEEecchhHHH
Q psy16850 51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK-----EAGLVFTSCYVAN 125 (174)
Q Consensus 51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~-----e~al~f~sGy~aN 125 (174)
...+|+|++++- .+...|.+.+++.++++. +. ..=.-..|...+.+.+.+.+++++|. +..+++++|..+.
T Consensus 28 ~~~~i~l~~g~p-~~~~~~~~~~~~~~~~~~-~~--~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al 103 (384)
T PRK12414 28 QHDALNLSQGAP-NFAPDPALVEGVARAMRD-GH--NQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGL 103 (384)
T ss_pred hCCeEEcCCCCC-CCCCCHHHHHHHHHHHHh-CC--CCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHH
Confidence 345789988752 455578888888877653 21 11012246678888888888888885 3578888888887
Q ss_pred HHHHHHhcc
Q psy16850 126 DSTLFTLGK 134 (174)
Q Consensus 126 ~~~i~aL~~ 134 (174)
..++.+++.
T Consensus 104 ~~~~~~l~~ 112 (384)
T PRK12414 104 YAAISALVH 112 (384)
T ss_pred HHHHHHhcC
Confidence 788888865
No 158
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=95.19 E-value=0.12 Score=46.46 Aligned_cols=79 Identities=16% Similarity=0.173 Sum_probs=59.0
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC---CcEEEecch
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK---EAGLVFTSC 121 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~---e~al~f~sG 121 (174)
..+|+++|+|.|. .-||-+ ||+|.+|+.+.+++...... .....+...+|-+.|++.+.. +.+.+.+||
T Consensus 36 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~l~~~~~----~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~SG 110 (425)
T PRK07495 36 DKEGRRYIDFAAGIAVVNTGHR-HPRVIAAVKAQLDRFTHTCH----QVVPYENYVRLAERLNALVPGDFAKKTIFVTTG 110 (425)
T ss_pred eCCCCEEEEccccHHhhccCCC-CHHHHHHHHHHHhhccCccc----CccCCHHHHHHHHHHHHhCCCCCCCEEEECCch
Confidence 4689999999775 235553 99999999999987542211 122356778888889998753 578999999
Q ss_pred hHHHHHHHHH
Q psy16850 122 YVANDSTLFT 131 (174)
Q Consensus 122 y~aN~~~i~a 131 (174)
-.||-+.|..
T Consensus 111 seA~e~Alkl 120 (425)
T PRK07495 111 AEAVENAVKI 120 (425)
T ss_pred HHHHHHHHHH
Confidence 9999998874
No 159
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=95.15 E-value=0.11 Score=46.43 Aligned_cols=79 Identities=23% Similarity=0.201 Sum_probs=59.1
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC---CCcEEEecch
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ---KEAGLVFTSC 121 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g---~e~al~f~sG 121 (174)
..+|+++|+|.+. .-||-+ ||+|.+|+.+.+++..... . ....++...+|-++|+++.. .+.+.+++||
T Consensus 36 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~--~--~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sG 110 (421)
T PRK06777 36 DVEGREYIDFAAGIAVLNTGHR-HPKVVAAVRQQLDQFTHTA--Y--QIVPYASYVTLAERINALAPIDGPAKTAFFTTG 110 (421)
T ss_pred eCCCCEEEEcccCHHhhccCCC-CHHHHHHHHHHHhhccccc--c--cccCChHHHHHHHHHHHhCCCCCCceEEEeCCc
Confidence 3689999999765 234544 9999999999998854221 1 11235677888899999864 4689999999
Q ss_pred hHHHHHHHHH
Q psy16850 122 YVANDSTLFT 131 (174)
Q Consensus 122 y~aN~~~i~a 131 (174)
-.||-..|..
T Consensus 111 seA~e~Alkl 120 (421)
T PRK06777 111 AEAVENAVKI 120 (421)
T ss_pred HHHHHHHHHH
Confidence 9999998874
No 160
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=95.15 E-value=0.11 Score=46.90 Aligned_cols=79 Identities=14% Similarity=0.124 Sum_probs=60.1
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY 122 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy 122 (174)
..+|+++|+|.+. .-||-+ ||+|.+|+.+.+++......+ .-.++...+|-++|++..+ .+.+.+.+||-
T Consensus 39 D~dG~~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~~~~~~~~----~~~~~~~~~la~~L~~~~p~~~~~v~f~~SGs 113 (428)
T PRK07986 39 LADGRRLVDGMSSWWAAIHGYN-HPQLNAAMKSQIDAMSHVMFG----GITHPPAIELCRKLVAMTPQPLECVFLADSGS 113 (428)
T ss_pred eCCCCEEEEcchhHHhhcCCCC-CHHHHHHHHHHHhhcCCcccc----ccCCHHHHHHHHHHHhhCCCCcCEEEEeCCcH
Confidence 3679999999875 466765 799999999999886532211 1145778888999999875 35788889999
Q ss_pred HHHHHHHHH
Q psy16850 123 VANDSTLFT 131 (174)
Q Consensus 123 ~aN~~~i~a 131 (174)
.||-..|..
T Consensus 114 EAve~Alkl 122 (428)
T PRK07986 114 VAVEVAMKM 122 (428)
T ss_pred HHHHHHHHH
Confidence 999988873
No 161
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=95.14 E-value=0.11 Score=46.81 Aligned_cols=79 Identities=15% Similarity=0.098 Sum_probs=60.4
Q ss_pred ecCCeeEEEecc---CcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850 48 TDSEKEVTVYCS---NDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY 122 (174)
Q Consensus 48 ~~~g~~~inf~S---ndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy 122 (174)
..+|+++|+|.| +.-||-+ ||+|.+|+.+.+++.+....+ .=.++...+|-++|++.+. .+.+.+.+||-
T Consensus 40 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~~----~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGs 114 (429)
T PRK06173 40 LKDGRRLIDGMSSWWAALHGYN-HPRLNAAATNQLAKMSHIMFG----GFTHEPAVELAQKLLEILPPSLNKIFFADSGS 114 (429)
T ss_pred cCCCCEEEEccchHHhccCCCC-CHHHHHHHHHHHHhcCCcccc----ccCCHHHHHHHHHHHhhCCCCcCEEEEeCCch
Confidence 367999999987 4466765 799999999999886522111 1135777889999999874 56788899999
Q ss_pred HHHHHHHHH
Q psy16850 123 VANDSTLFT 131 (174)
Q Consensus 123 ~aN~~~i~a 131 (174)
.||-+.|..
T Consensus 115 eAve~Alkl 123 (429)
T PRK06173 115 VAVEVAMKM 123 (429)
T ss_pred HHHHHHHHH
Confidence 999988874
No 162
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=95.13 E-value=0.13 Score=46.64 Aligned_cols=79 Identities=14% Similarity=0.076 Sum_probs=60.0
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY 122 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy 122 (174)
..+|+++|+|.|. .-||- .||+|.+++.+.+++...++. ... .++...+|-++|++.+. .+.+.+.+||-
T Consensus 45 D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~l~~~~~---~~~-~~~~~~~la~~L~~~~p~~~~~v~f~~sGs 119 (445)
T PRK09221 45 DADGRKILDGTAGLWCCNAGH-GRPEIVEAVARQAATLDYAPA---FQM-GHPLAFELAERLAELAPGGLDHVFFTNSGS 119 (445)
T ss_pred eCCCCEEEEccccHhhccCCC-CCHHHHHHHHHHHHhccCccc---ccc-CCHHHHHHHHHHHHhCCCCCCEEEEeCCcH
Confidence 3689999999765 33555 399999999999988654332 111 35677889999999874 46899999999
Q ss_pred HHHHHHHHH
Q psy16850 123 VANDSTLFT 131 (174)
Q Consensus 123 ~aN~~~i~a 131 (174)
.||-+.|..
T Consensus 120 eAve~Alkl 128 (445)
T PRK09221 120 ESVDTALKI 128 (445)
T ss_pred HHHHHHHHH
Confidence 999998874
No 163
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=95.12 E-value=0.12 Score=47.06 Aligned_cols=110 Identities=15% Similarity=0.038 Sum_probs=77.4
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY 122 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy 122 (174)
..+|+++|+|.++ .-||- .||+|.+|+.+.+++.... ++. -.++...+|.++|++.+. .+.+.+.+||-
T Consensus 78 D~dG~~ylD~~~g~~~~~lGH-~~p~v~~Ai~~ql~~l~~~---~~~--~~~~~~~~lae~L~~~~p~~~~~v~f~~SGs 151 (459)
T PRK11522 78 DTQGQEFIDCLGGFGIFNVGH-RNPVVVSAVQNQLAKQPLH---SQE--LLDPLRAMLAKTLAALTPGKLKYSFFCNSGT 151 (459)
T ss_pred ECCCCEEEECCcCHHhhhcCC-CCHHHHHHHHHHHhhCccc---ccc--cCCHHHHHHHHHHHHhCCCCCCEEEEeCCch
Confidence 3679999999777 33553 3999999999999876443 232 246788899999999874 35688899999
Q ss_pred HHHHHHHHHhcc------c---------CCCCeeE------------------EEEEEecCCCHHHHHHHHHHh
Q psy16850 123 VANDSTLFTLGK------M---------IPYFTEL------------------IYFYRFLANTTDIIKEASKEL 163 (174)
Q Consensus 123 ~aN~~~i~aL~~------~---------~~g~~~s------------------~~~~~f~HNd~~~Le~~L~~~ 163 (174)
.||-+.+..--. + ..|.... ..+..++.||.++|++.|++.
T Consensus 152 EAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 225 (459)
T PRK11522 152 ESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSEC 225 (459)
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHh
Confidence 999998873221 0 1111100 124567889999999999764
No 164
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=95.09 E-value=0.13 Score=45.63 Aligned_cols=65 Identities=12% Similarity=0.030 Sum_probs=49.5
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD 154 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~ 154 (174)
.+...+||+.||++.|.+.++++++|..|...++.++.+ +|++.. +.+....-.|++
T Consensus 50 ~p~~~~le~~lA~l~g~~~v~~~~gg~~Ai~~~l~all~--~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~~d~~ 127 (382)
T TIGR02080 50 NPTRDLLQQALAELEGGAGAVVTNTGMSAIHLVTTALLG--PDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQ 127 (382)
T ss_pred CchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHcC--CCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECCCCHH
Confidence 357899999999999999999999999999999999876 444432 123333445777
Q ss_pred HHHHHHHH
Q psy16850 155 IIKEASKE 162 (174)
Q Consensus 155 ~Le~~L~~ 162 (174)
+|++.++.
T Consensus 128 ~l~~ai~~ 135 (382)
T TIGR02080 128 ALRAALAQ 135 (382)
T ss_pred HHHHhcCc
Confidence 77777754
No 165
>PRK06062 hypothetical protein; Provisional
Probab=95.08 E-value=0.13 Score=46.73 Aligned_cols=78 Identities=17% Similarity=0.142 Sum_probs=60.1
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY 122 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy 122 (174)
..+|+++|+|.+. .-||-+ ||+|.+|+.+.+++..... +.. .++...+|-++|++... .+.+.+.+||-
T Consensus 49 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~~~~~--~~~---~~~~~~~lae~L~~~~p~~~~~v~f~~SGs 122 (451)
T PRK06062 49 DYEGRRYLDFSSQLVNTNIGHQ-HPKVVAAIQEQAARLCTVA--PAH---ANDARSEAARLIAERAPGDLSKVFFTNGGA 122 (451)
T ss_pred ECCCCEEEEcccCHHhhcCCCC-CHHHHHHHHHHHHhcCCcC--Ccc---CCHHHHHHHHHHHHhCCCCCCEEEEcCChH
Confidence 4689999999775 335544 8999999999998754221 111 36778999999999874 46889999999
Q ss_pred HHHHHHHHH
Q psy16850 123 VANDSTLFT 131 (174)
Q Consensus 123 ~aN~~~i~a 131 (174)
.||-+.|..
T Consensus 123 EAve~Alkl 131 (451)
T PRK06062 123 DANEHAVRM 131 (451)
T ss_pred HHHHHHHHH
Confidence 999999875
No 166
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=95.07 E-value=0.13 Score=42.87 Aligned_cols=73 Identities=16% Similarity=0.039 Sum_probs=51.9
Q ss_pred EEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC--------cEEEecchhHHHH
Q psy16850 55 TVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE--------AGLVFTSCYVAND 126 (174)
Q Consensus 55 inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e--------~al~f~sGy~aN~ 126 (174)
+||++++| .+..+|.++.+..+ ..++.+..+ .+...-+.++|+.+|++++.+ ..++.++|..++.
T Consensus 1 ~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~ 73 (350)
T cd00609 1 IDLSIGEP-DFPPPPEVLEALAA--AALRAGLLG----YYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALS 73 (350)
T ss_pred CCCCCCCC-CCCCCHHHHHHHHH--HhhccCCCC----CCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHH
Confidence 47788887 77778888777765 334433322 234455677777788877644 6888899999999
Q ss_pred HHHHHhcc
Q psy16850 127 STLFTLGK 134 (174)
Q Consensus 127 ~~i~aL~~ 134 (174)
.++.++.+
T Consensus 74 ~~~~~~~~ 81 (350)
T cd00609 74 LLLRALLN 81 (350)
T ss_pred HHHHHhCC
Confidence 99999875
No 167
>PRK08064 cystathionine beta-lyase; Provisional
Probab=95.05 E-value=0.12 Score=45.70 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=31.9
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHH
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFT 131 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~a 131 (174)
.+..++||+.||+++|.+.+++|+||..|...++..
T Consensus 53 ~p~~~~le~~lA~l~g~~~~v~~~sG~~ai~~~l~~ 88 (390)
T PRK08064 53 NPTREALEDIIAELEGGTKGFAFASGMAAISTAFLL 88 (390)
T ss_pred ChhHHHHHHHHHHHhCCCCeEEECCHHHHHHHHHHH
Confidence 377899999999999999999999999988777753
No 168
>PRK05764 aspartate aminotransferase; Provisional
Probab=95.05 E-value=0.37 Score=41.86 Aligned_cols=102 Identities=17% Similarity=0.050 Sum_probs=65.5
Q ss_pred CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC----C----CcEEEecchh
Q psy16850 51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ----K----EAGLVFTSCY 122 (174)
Q Consensus 51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g----~----e~al~f~sGy 122 (174)
+..+++|++++ ..+...|++.+++.++++....+ ++...-..+|++.||++++ . +..++++++.
T Consensus 30 ~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~ 101 (393)
T PRK05764 30 GRDVISLGAGE-PDFDTPEHIKEAAIEALDDGKTK-------YTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAK 101 (393)
T ss_pred cCCEEEeCCCC-CCCCCCHHHHHHHHHHHhcCCCC-------cCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcH
Confidence 45688999876 56777888888888887642211 2222336788888888873 2 3356666667
Q ss_pred HHHHHHHHHhcccCCCCeeE-----------------EEEEEecCC-------CHHHHHHHHHH
Q psy16850 123 VANDSTLFTLGKMIPYFTEL-----------------IYFYRFLAN-------TTDIIKEASKE 162 (174)
Q Consensus 123 ~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~HN-------d~~~Le~~L~~ 162 (174)
.+...++.++++ +|.... +++..++++ |+++|++.++.
T Consensus 102 ~a~~~~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~ 163 (393)
T PRK05764 102 QALYNAFMALLD--PGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITP 163 (393)
T ss_pred HHHHHHHHHhcC--CCCEEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCc
Confidence 788778888765 332221 355566654 46788887753
No 169
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=94.97 E-value=0.19 Score=43.14 Aligned_cols=72 Identities=17% Similarity=0.105 Sum_probs=44.6
Q ss_pred ccCCCC-CccchHHHHHHHHHcCCCc--cccccccCCchHHHHHHHHHHHHhCCC---cEEEecchhHHHHHHHHHhc
Q psy16850 62 YLGMSC-HPKVKSAVREALEKFGTGA--GGTRNISGNSLFHEKLEEDVARLHQKE---AGLVFTSCYVANDSTLFTLG 133 (174)
Q Consensus 62 YLGL~~-~p~v~~a~~~al~~~G~gs--~~Sr~~~G~~~~~~~LE~~lA~~~g~e---~al~f~sGy~aN~~~i~aL~ 133 (174)
|=|.+. -|.+++++++.+..+...+ +..+.-......+.++++.+|+++|.+ ..++.++|..++..++.+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~ 82 (373)
T cd06453 5 NAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLG 82 (373)
T ss_pred CccccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhh
Confidence 334444 4667788877776654322 122222334677889999999999977 45556666667555555553
No 170
>PRK08361 aspartate aminotransferase; Provisional
Probab=94.97 E-value=0.28 Score=42.86 Aligned_cols=102 Identities=16% Similarity=0.040 Sum_probs=64.7
Q ss_pred eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----C----CCcEEEecchhH
Q psy16850 52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----Q----KEAGLVFTSCYV 123 (174)
Q Consensus 52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g----~e~al~f~sGy~ 123 (174)
..+|+|+.|+ ..+...+.+++++.++++..-.+ ++...-..+|++.+|+++ | .+..+++++|..
T Consensus 33 ~~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 104 (391)
T PRK08361 33 ENVISLGIGE-PDFDTPKNIKEAAKRALDEGWTH-------YTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYE 104 (391)
T ss_pred cCeEEcCCCC-CCCCCCHHHHHHHHHHHhcCCCC-------CCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHH
Confidence 3578998775 44555677888888776531111 222233578888999987 3 245677777788
Q ss_pred HHHHHHHHhcccCCCCeeE-----------------EEEEEecC-------CCHHHHHHHHHHh
Q psy16850 124 ANDSTLFTLGKMIPYFTEL-----------------IYFYRFLA-------NTTDIIKEASKEL 163 (174)
Q Consensus 124 aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~H-------Nd~~~Le~~L~~~ 163 (174)
++..++.++++ +|.++. +.++.+++ .|+++|++.+...
T Consensus 105 al~~~~~~l~~--~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~ 166 (391)
T PRK08361 105 ATYLAFESLLE--EGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITKR 166 (391)
T ss_pred HHHHHHHHhcC--CCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccc
Confidence 88888888865 343322 24555554 4678888877643
No 171
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=94.95 E-value=0.17 Score=45.25 Aligned_cols=80 Identities=19% Similarity=0.161 Sum_probs=59.4
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC---CCcEEEecch
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ---KEAGLVFTSC 121 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g---~e~al~f~sG 121 (174)
..+|+++|+|.+. .-||-+ ||+|.+|+.+.+++..... ... -.++...+|-++|++... .+.+.+++||
T Consensus 36 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~--~~~--~~~~~~~~la~~l~~~~p~~~~~~~~f~~sG 110 (421)
T PRK09792 36 DVEGNEYIDFAAGIAVLNTGHR-HPDLVAAVEQQLQQFTHTA--YQI--VPYESYVTLAEKINALAPVSGQAKTAFFTTG 110 (421)
T ss_pred eCCCCEEEEccCchhhhcCCCC-CHHHHHHHHHHHHhccCcc--cCc--cCCHHHHHHHHHHHHhCCCCCCceEEEeCCh
Confidence 4689999999654 336654 9999999999998854221 111 235677888888999764 3678999999
Q ss_pred hHHHHHHHHHh
Q psy16850 122 YVANDSTLFTL 132 (174)
Q Consensus 122 y~aN~~~i~aL 132 (174)
-.||-+.|..-
T Consensus 111 seA~e~AlklA 121 (421)
T PRK09792 111 AEAVENAVKIA 121 (421)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 172
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=94.86 E-value=0.16 Score=46.19 Aligned_cols=110 Identities=15% Similarity=0.076 Sum_probs=75.8
Q ss_pred ecCCeeEEEeccC--c-ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--CcEEEecchh
Q psy16850 48 TDSEKEVTVYCSN--D-YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--EAGLVFTSCY 122 (174)
Q Consensus 48 ~~~g~~~inf~Sn--d-YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--e~al~f~sGy 122 (174)
..+|+++|+|.++ . -||- .||+|.+|+.+.+++.... ++.. .++...+|-++|++.+.. +.+.+.+||-
T Consensus 71 D~dG~~ylD~~~g~~~~~lGh-~hp~v~~Av~~ql~~l~~~---~~~~--~~~~~~~lAe~L~~~~p~~~~~v~f~~SGs 144 (442)
T TIGR03372 71 DTQGNEFIDCLGGFGIFNVGH-RNPNVIAAVENQLAKQPLH---SQEL--LDPLRALLAKTLAALTPGKLKYSFFCNSGT 144 (442)
T ss_pred ECCCCEEEECCccHHhhhcCC-CCHHHHHHHHHHHHhCCCc---cccc--CCHHHHHHHHHHHHhCCCCcCEEEEeCCch
Confidence 3679999999776 2 2453 3999999999999876533 2322 367788899999988753 4577889999
Q ss_pred HHHHHHHHHhc------cc---------CCCCee------------------EEEEEEecCCCHHHHHHHHHHh
Q psy16850 123 VANDSTLFTLG------KM---------IPYFTE------------------LIYFYRFLANTTDIIKEASKEL 163 (174)
Q Consensus 123 ~aN~~~i~aL~------~~---------~~g~~~------------------s~~~~~f~HNd~~~Le~~L~~~ 163 (174)
.||-+.+..-- ++ ..|... ...+..++.||.+.|++.|++.
T Consensus 145 EA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~ 218 (442)
T TIGR03372 145 ESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNEC 218 (442)
T ss_pred HHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHH
Confidence 99998887321 10 111110 0124567789999999988764
No 173
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=94.85 E-value=0.16 Score=45.70 Aligned_cols=79 Identities=16% Similarity=0.127 Sum_probs=59.9
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY 122 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy 122 (174)
..+|+++|+|.+. .-||-+ ||+|.+|+.+.+++......+ .-.++...+|-++|++..+ .+.+.+.+||-
T Consensus 36 D~dG~~ylD~~~g~~~~~lGh~-~p~i~~ai~~q~~~~~~~~~~----~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGs 110 (422)
T PRK05630 36 LEDGSTVIDAMSSWWSAAHGHG-HPRLKAAAHKQIDTMSHVMFG----GLTHEPAIKLTRKLLNLTDNGLDHVFYSDSGS 110 (422)
T ss_pred ECCCCEEEEcchhHHHhcCCCC-CHHHHHHHHHHHHhCCCcccC----CcCCHHHHHHHHHHHhhCCCCcCEEEEeCCcH
Confidence 4679999999774 334544 999999999999886532111 1135677889999999874 56899999999
Q ss_pred HHHHHHHHH
Q psy16850 123 VANDSTLFT 131 (174)
Q Consensus 123 ~aN~~~i~a 131 (174)
.||-+.|..
T Consensus 111 eA~e~Alkl 119 (422)
T PRK05630 111 VSVEVAIKM 119 (422)
T ss_pred HHHHHHHHH
Confidence 999998874
No 174
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=94.84 E-value=0.15 Score=45.43 Aligned_cols=80 Identities=16% Similarity=0.074 Sum_probs=56.0
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh--C--CC-cEEEe-
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH--Q--KE-AGLVF- 118 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~--g--~e-~al~f- 118 (174)
..+|+++|+|.|. .-||-+ ||+|.+|+.+.+++.+.-.+. ...++...+|-++|++.. + .. .+.+|
T Consensus 31 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~~~----~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~ 105 (412)
T TIGR02407 31 DEDGKEYIDFFAGAGALNYGHN-NPKLKQALIDYLADDGIIHSL----DMATEAKREFLETFNEIILKPRGLDYKVQFPG 105 (412)
T ss_pred eCCCCEEEEcccchhhccCCCC-CHHHHHHHHHHHhhccceecc----ccCcHHHHHHHHHHHHhccCccCCCceEEEeC
Confidence 4689999999766 224444 999999999999876643221 113567778888888864 1 22 34454
Q ss_pred cchhHHHHHHHHHh
Q psy16850 119 TSCYVANDSTLFTL 132 (174)
Q Consensus 119 ~sGy~aN~~~i~aL 132 (174)
+||-.||-+.|..-
T Consensus 106 ~sGseA~e~AlklA 119 (412)
T TIGR02407 106 PTGTNAVESALKLA 119 (412)
T ss_pred CCchHHHHHHHHHH
Confidence 79999999988753
No 175
>PRK05965 hypothetical protein; Provisional
Probab=94.83 E-value=0.14 Score=46.48 Aligned_cols=80 Identities=13% Similarity=-0.007 Sum_probs=57.9
Q ss_pred ecCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850 48 TDSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY 122 (174)
Q Consensus 48 ~~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy 122 (174)
..+|+++|+|.|.- =||-+ ||+|.+|+.+.+++....+ ....-.++...+|-++|++.+. .+.+.+.+||-
T Consensus 42 D~dG~~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~~~~~~---~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGS 117 (459)
T PRK05965 42 DASGHQLLDAFAGLWCVNVGYG-QESIVEAAAEQMRELPYAT---GYFHFGSEPAIRLAAKLAERAPGSLNHVYFTLGGS 117 (459)
T ss_pred ECCCCEEEECcccHHhccCCCC-CHHHHHHHHHHHHhcCCcc---cccccCCHHHHHHHHHHHhhCCCCcCEEEEeCChh
Confidence 36899999997652 23433 9999999999998754322 1111135677889999999873 45677778999
Q ss_pred HHHHHHHHH
Q psy16850 123 VANDSTLFT 131 (174)
Q Consensus 123 ~aN~~~i~a 131 (174)
.||-+.|..
T Consensus 118 EAve~AlKl 126 (459)
T PRK05965 118 DAVDSAVRF 126 (459)
T ss_pred HHHHHHHHH
Confidence 999998874
No 176
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=94.83 E-value=0.11 Score=47.09 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhc
Q psy16850 97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLG 133 (174)
Q Consensus 97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~ 133 (174)
....+||++||+++|.+.+++++||..|+..++.+++
T Consensus 63 ~~~~~fe~~lA~~~g~~~~v~~~sGt~al~~aL~al~ 99 (438)
T PRK15407 63 RFNDAFEKKLAEFLGVRYALLVNSGSSANLLAFSALT 99 (438)
T ss_pred hhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHh
Confidence 4588999999999999999999999999999998874
No 177
>PRK05967 cystathionine beta-lyase; Provisional
Probab=94.78 E-value=0.2 Score=44.90 Aligned_cols=46 Identities=13% Similarity=0.105 Sum_probs=39.5
Q ss_pred CchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE
Q psy16850 95 NSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL 142 (174)
Q Consensus 95 ~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s 142 (174)
..+..+.||+.||..-+.+.+++|+||..|...++.+|.+ +|+++.
T Consensus 62 gnPt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all~--~GD~Vl 107 (395)
T PRK05967 62 GTPTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFLS--PGDHAL 107 (395)
T ss_pred CChHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhcC--CCCEEE
Confidence 3578899999999999999999999999999999988876 555443
No 178
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=94.73 E-value=0.18 Score=45.66 Aligned_cols=79 Identities=20% Similarity=0.140 Sum_probs=59.4
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--CcEEEecchh
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--EAGLVFTSCY 122 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--e~al~f~sGy 122 (174)
..+|+++|+|.+. .-||-+ ||+|.+|+.+.+++....+. ....++...+|-++|++..+. +.+.+.+||-
T Consensus 37 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~~~~~----~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGs 111 (443)
T PRK08360 37 DIEGNEYIDFLSDAAVQNVGHN-NPRVVKAIKEQTDKLIHYTP----IYGFPVEPLLLAEKLIEIAPGDNPKVSFGLSGS 111 (443)
T ss_pred ECCCCEEEEccccHhhcccCCC-CHHHHHHHHHHHHhccCccc----cccCcHHHHHHHHHHHHhCCCCCCEEEEcCCHH
Confidence 3689999999765 234444 99999999999987543221 122456778999999998854 5788889999
Q ss_pred HHHHHHHHH
Q psy16850 123 VANDSTLFT 131 (174)
Q Consensus 123 ~aN~~~i~a 131 (174)
.||-+.|..
T Consensus 112 EAve~Alkl 120 (443)
T PRK08360 112 DANDGAIKF 120 (443)
T ss_pred HHHHHHHHH
Confidence 999998874
No 179
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=94.64 E-value=0.12 Score=45.01 Aligned_cols=83 Identities=17% Similarity=0.131 Sum_probs=62.4
Q ss_pred eecCCeeEEEeccCc-ccCCCC-CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh--CCCcEEEecchh
Q psy16850 47 YTDSEKEVTVYCSND-YLGMSC-HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH--QKEAGLVFTSCY 122 (174)
Q Consensus 47 ~~~~g~~~inf~Snd-YLGL~~-~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~--g~e~al~f~sGy 122 (174)
+..+|+++++|+|.- =..|.+ ||+|.+++.+.+++....+. + ...++...+|-++|++.+ +.+.+.+.+||-
T Consensus 11 ~d~dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~~-~---~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGs 86 (339)
T PF00202_consen 11 WDVDGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVSF-S---GFTHPEAAELAEKLAELFPGGLDRVFFANSGS 86 (339)
T ss_dssp EETTSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCST-T---TSEEHHHHHHHHHHHHHSSTTEEEEEEESSHH
T ss_pred EECCCCEEEECCCCccceecCCCccccchhHHHHhhhcccccc-c---ceeccchhhhhhhhhhccccccceeeeccCch
Confidence 357899999997542 233443 89999999999887654321 1 124578899999999999 778889999999
Q ss_pred HHHHHHHHHhc
Q psy16850 123 VANDSTLFTLG 133 (174)
Q Consensus 123 ~aN~~~i~aL~ 133 (174)
.||-..|....
T Consensus 87 eAve~Alkla~ 97 (339)
T PF00202_consen 87 EAVEAALKLAR 97 (339)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999988665
No 180
>PRK08297 L-lysine aminotransferase; Provisional
Probab=94.58 E-value=0.31 Score=44.08 Aligned_cols=108 Identities=13% Similarity=0.130 Sum_probs=70.3
Q ss_pred HHHHHHHHhCCCCceeeecccccCCCCceeeec--CCeeEEEeccCc---ccCCCCCccchH--HHHHHHHHcCCCcccc
Q psy16850 17 EQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTD--SEKEVTVYCSND---YLGMSCHPKVKS--AVREALEKFGTGAGGT 89 (174)
Q Consensus 17 ~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~--~g~~~inf~Snd---YLGL~~~p~v~~--a~~~al~~~G~gs~~S 89 (174)
..|....-..-|+.+..+.+..+ .+++. +|+++|+|.|.= -||-+ ||+|.+ ++.+.+++...-.+++
T Consensus 13 ~~~~~~~~~~~~p~~~~i~~a~G-----~~l~D~~dG~~ylD~~~g~~~~~lGh~-~p~v~~~~ai~~ql~~l~~~~~~~ 86 (443)
T PRK08297 13 EVLARHILVDGFDLVLDLERSQG-----SYLVDARTGRRYLDMFTFFASSALGMN-HPALADDPEFRAELGRAALNKPSN 86 (443)
T ss_pred HHHHHHHhhcCCCcceEEEeccC-----CEEEECCCCCEeeecccCHhhhcCCCC-ChHHhhHHHHHHHHHHhhhhcccc
Confidence 34444444455665554555432 23333 799999997652 24443 999999 9998887754211111
Q ss_pred ccccCCchHHHHHHHHHHHHh---CCCcEEEecchhHHHHHHHHHh
Q psy16850 90 RNISGNSLFHEKLEEDVARLH---QKEAGLVFTSCYVANDSTLFTL 132 (174)
Q Consensus 90 r~~~G~~~~~~~LE~~lA~~~---g~e~al~f~sGy~aN~~~i~aL 132 (174)
. .-.++...+|-++|+++. +.+.+.+.+||-.||-..|..-
T Consensus 87 ~--~~~~~~~~~la~~l~~~~~p~~~~~v~f~~SGsEAve~AlKlA 130 (443)
T PRK08297 87 S--DVYTVEMARFVDTFARVLGDPELPHLFFVDGGALAVENALKVA 130 (443)
T ss_pred C--CcCCHHHHHHHHHHHhhcCCCCCCEEEEeCchHHHHHHHHHHH
Confidence 1 113467778888888886 3468999999999999998865
No 181
>PRK06917 hypothetical protein; Provisional
Probab=94.51 E-value=0.23 Score=45.00 Aligned_cols=80 Identities=16% Similarity=0.114 Sum_probs=59.3
Q ss_pred ecCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--CcEEEecchh
Q psy16850 48 TDSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--EAGLVFTSCY 122 (174)
Q Consensus 48 ~~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--e~al~f~sGy 122 (174)
..+|+++|+|.+.- =||-+ ||+|.+|+.+.+++...... +.. .++...+|-++|++.+.. +.+.+.+||-
T Consensus 27 D~dG~~ylD~~~g~~~~~lGh~-hp~v~~Ai~~ql~~~~~~~~-~~~---~~~~~~~lae~L~~~~p~~~~~v~f~~sGs 101 (447)
T PRK06917 27 DQNGNKYFDGSSGAVTAGIGHG-VKEIADAIKEQAEEVSFVYR-SQF---TSEPAEKLAKKLSDLSPGDLNWSFFVNSGS 101 (447)
T ss_pred eCCCCEEEECchhHHhccCCCC-CHHHHHHHHHHHhhCcCccc-ccc---CCHHHHHHHHHHHHhCCCCCCEEEEeCChH
Confidence 36899999998662 23433 99999999999988543221 122 257788899999998853 4677779999
Q ss_pred HHHHHHHHHh
Q psy16850 123 VANDSTLFTL 132 (174)
Q Consensus 123 ~aN~~~i~aL 132 (174)
.||-..|..-
T Consensus 102 EAve~AlklA 111 (447)
T PRK06917 102 EANETAMKIA 111 (447)
T ss_pred HHHHHHHHHH
Confidence 9999998854
No 182
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=94.45 E-value=0.24 Score=42.90 Aligned_cols=78 Identities=14% Similarity=0.059 Sum_probs=46.4
Q ss_pred eEEEeccCcccCCCCCccchHH-HHHHHHHcCCCcc--ccccccCCchHHHHHHHHHHHHhCCC--cEEEecchh-HHHH
Q psy16850 53 EVTVYCSNDYLGMSCHPKVKSA-VREALEKFGTGAG--GTRNISGNSLFHEKLEEDVARLHQKE--AGLVFTSCY-VAND 126 (174)
Q Consensus 53 ~~inf~SndYLGL~~~p~v~~a-~~~al~~~G~gs~--~Sr~~~G~~~~~~~LE~~lA~~~g~e--~al~f~sGy-~aN~ 126 (174)
.+++++.++ +|+. +|+++++ +.++ .. -.+.+ ......|...+.+++++.+++++|.+ .++++++|- .++.
T Consensus 21 ~~~~l~~g~-~~~~-~p~~~~~~~~~~-~~-~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~ 96 (398)
T cd00613 21 SMSFLGSGT-YKHN-PPAVIKRNILEN-EF-YTAYTPYQPEISQGRLQALFELQTMLCELTGMDVANASLQDEATAAAEA 96 (398)
T ss_pred Ccccccccc-cCCc-CcHHHHHHhccc-cC-cccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHH
Confidence 345565554 4655 4555444 4443 11 01111 11114677889999999999999987 566666444 5677
Q ss_pred HHHHHhcc
Q psy16850 127 STLFTLGK 134 (174)
Q Consensus 127 ~~i~aL~~ 134 (174)
.++.++..
T Consensus 97 ~~~~~~~~ 104 (398)
T cd00613 97 AGLAAIRA 104 (398)
T ss_pred HHHHHHhc
Confidence 77776654
No 183
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=94.42 E-value=0.23 Score=44.77 Aligned_cols=79 Identities=15% Similarity=0.053 Sum_probs=56.0
Q ss_pred ecCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC----CcEEEe-c
Q psy16850 48 TDSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK----EAGLVF-T 119 (174)
Q Consensus 48 ~~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~----e~al~f-~ 119 (174)
..+|+++|+|.|.- -||-+ ||+|.+|+.+.+++....++ . .-.++...+|-++|++.+.. ...++| +
T Consensus 35 D~dG~~ylD~~~g~~~~~lGh~-~p~i~~ai~~q~~~~~~~~~--~--~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~ 109 (442)
T TIGR00709 35 DVEGKEYLDFLAGAGTLALGHN-HPNMKQKILDYLQSGLPLHT--L--DLTTPLKDAFIEALLNIIPKRKMDYKLQFPGP 109 (442)
T ss_pred eCCCCEEEEccccHhhhcCCCC-CHHHHHHHHHHHHhccCccc--c--ccCcHHHHHHHHHHHHhCCCcCCCccEEEeCC
Confidence 46899999997763 23333 99999999999876321111 1 11357788899999998753 244555 8
Q ss_pred chhHHHHHHHHH
Q psy16850 120 SCYVANDSTLFT 131 (174)
Q Consensus 120 sGy~aN~~~i~a 131 (174)
||-.||-+.|..
T Consensus 110 sGsEA~e~Alkl 121 (442)
T TIGR00709 110 SGADAVEAAIKL 121 (442)
T ss_pred CHHHHHHHHHHH
Confidence 999999998874
No 184
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=94.31 E-value=0.18 Score=46.25 Aligned_cols=38 Identities=21% Similarity=-0.148 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhHH-HHHHHHHhcc
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYVA-NDSTLFTLGK 134 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~a-N~~~i~aL~~ 134 (174)
.+-+.+||+.+|+++|.+.++.++||-+| |+ +.+++++
T Consensus 70 ~~s~~~lE~~va~~~G~~~av~v~sGT~Al~l-l~~l~l~ 108 (450)
T TIGR02618 70 SRNFYHLERTVRELYGFKYVVPTHQGRGAENL-LSQIAIK 108 (450)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEcCCHHHHHHH-HHHhCCC
Confidence 34477999999999999999999999999 76 4555544
No 185
>PRK06108 aspartate aminotransferase; Provisional
Probab=94.30 E-value=0.83 Score=39.33 Aligned_cols=78 Identities=22% Similarity=0.045 Sum_probs=48.4
Q ss_pred eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC----CCcEEEecchhHHHHHH
Q psy16850 53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ----KEAGLVFTSCYVANDST 128 (174)
Q Consensus 53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g----~e~al~f~sGy~aN~~~ 128 (174)
.+|+|+.|+ -.+...|.+++++.+++..-..+. ....|...+.+.+.+.+++++| .+..++.++|..+...+
T Consensus 25 ~~i~l~~g~-~~~~~~~~~~~~~~~~~~~~~~~Y---~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~ 100 (382)
T PRK06108 25 GVLPLWFGE-SDLPTPDFIRDAAAAALADGETFY---THNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLA 100 (382)
T ss_pred CeEEecCCC-CCCCCCHHHHHHHHHHHhcCCCCC---CCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHH
Confidence 468888764 345567888999888775411111 1123445555555555555556 35567777778888888
Q ss_pred HHHhcc
Q psy16850 129 LFTLGK 134 (174)
Q Consensus 129 i~aL~~ 134 (174)
+.++.+
T Consensus 101 ~~~l~~ 106 (382)
T PRK06108 101 AQALVG 106 (382)
T ss_pred HHHhcC
Confidence 888865
No 186
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=94.30 E-value=0.21 Score=45.64 Aligned_cols=80 Identities=9% Similarity=0.003 Sum_probs=60.3
Q ss_pred ecCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC-------CCcEEE
Q psy16850 48 TDSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ-------KEAGLV 117 (174)
Q Consensus 48 ~~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g-------~e~al~ 117 (174)
..+|+++|+|.|.- -||-+ ||+|.+|+.+.++++..++.. .. .++...+|-++|++.+. .+.+.+
T Consensus 60 D~dG~~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~l~~~~~~-~~---~~~~~~~lae~L~~~~p~~~~~~~~~~v~f 134 (472)
T PRK08742 60 GHDGRRYLDAVSSWWTNLFGHA-EPRIGAAIAAQAGELEQVMLA-GF---THEPAVQLAEQLLAIAPRQDGRAPLSKVFY 134 (472)
T ss_pred eCCCCEEEEcCccHHhccCCCC-CHHHHHHHHHHHHhCCCcccc-cc---CCHHHHHHHHHHHHhCCCcccCCCCCEEEE
Confidence 36899999997762 24544 999999999999876544321 11 25678899999999874 357888
Q ss_pred ecchhHHHHHHHHHh
Q psy16850 118 FTSCYVANDSTLFTL 132 (174)
Q Consensus 118 f~sGy~aN~~~i~aL 132 (174)
.+||-.||-+.|..-
T Consensus 135 ~~sGSEAvE~AlKlA 149 (472)
T PRK08742 135 ADNGSAGVEVALKMA 149 (472)
T ss_pred eCCchHHHHHHHHHH
Confidence 999999999998854
No 187
>PRK07036 hypothetical protein; Provisional
Probab=94.28 E-value=0.24 Score=45.16 Aligned_cols=80 Identities=13% Similarity=0.015 Sum_probs=59.1
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY 122 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy 122 (174)
..+|+++|+|.|. .=||-+ ||+|.+|+.+.+++....+. ...-.++...+|-++|++... .+.+.+.+||-
T Consensus 47 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~~~~~~---~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGs 122 (466)
T PRK07036 47 DADGRRYLDGIGGMWCVNVGYG-REEMADAIADQARRLPYYTP---FGDMTNAPAAELAAKLAELAPGDLNHVFLTTGGS 122 (466)
T ss_pred ECCCCEEEECcccHHhhcCCCC-CHHHHHHHHHHHHhCccccc---ccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCch
Confidence 3689999999765 235544 99999999999988543322 111235778888899988874 45778889999
Q ss_pred HHHHHHHHH
Q psy16850 123 VANDSTLFT 131 (174)
Q Consensus 123 ~aN~~~i~a 131 (174)
.||-..|..
T Consensus 123 eAve~Alkl 131 (466)
T PRK07036 123 TAVDSALRF 131 (466)
T ss_pred HHHHHHHHH
Confidence 999998885
No 188
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=94.28 E-value=0.44 Score=41.33 Aligned_cols=66 Identities=21% Similarity=0.185 Sum_probs=44.0
Q ss_pred CCccchHHHHHHHHHcCCCcccccccc-CCchHHHHHHHHHHHHhCCCc-EEEecchhH-HHHHHHHHh
Q psy16850 67 CHPKVKSAVREALEKFGTGAGGTRNIS-GNSLFHEKLEEDVARLHQKEA-GLVFTSCYV-ANDSTLFTL 132 (174)
Q Consensus 67 ~~p~v~~a~~~al~~~G~gs~~Sr~~~-G~~~~~~~LE~~lA~~~g~e~-al~f~sGy~-aN~~~i~aL 132 (174)
..+.+++++.+.+..++.+++++.... +....++++++.||+++|.+. .++|++|-. +...++.++
T Consensus 29 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~ 97 (397)
T TIGR01976 29 IPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAI 97 (397)
T ss_pred CCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHH
Confidence 367889999999988765554444322 345678999999999999753 466655544 333344444
No 189
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=94.25 E-value=0.9 Score=38.98 Aligned_cols=108 Identities=10% Similarity=0.020 Sum_probs=67.2
Q ss_pred CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc--EEEecchhHHHHH-
Q psy16850 51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA--GLVFTSCYVANDS- 127 (174)
Q Consensus 51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~--al~f~sGy~aN~~- 127 (174)
+..+|+|+.|.= .+...|++++++.++++....... +. .-..+|.+.||+|+|.+. -+++++|-..-+.
T Consensus 25 ~~~~i~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Y------~~-~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~ 96 (356)
T PRK04870 25 ATGMVKLDAMEN-PYRLPAELRAELGERLAEVALNRY------PD-PRAAALKAALRAAMGVPAGADVLLGNGSDELIQL 96 (356)
T ss_pred CCCceeCcCCCC-CCCCCHHHHHHHHHHhhccccccC------CC-CCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHH
Confidence 346888877743 677788999999988764222111 11 124789999999999653 5888888765544
Q ss_pred HHHHhcccCCCCeeE-----------------EEEEEec-----CCCHHHHHHHHHHhccccc
Q psy16850 128 TLFTLGKMIPYFTEL-----------------IYFYRFL-----ANTTDIIKEASKELQEDMI 168 (174)
Q Consensus 128 ~i~aL~~~~~g~~~s-----------------~~~~~f~-----HNd~~~Le~~L~~~~~~~~ 168 (174)
++.+++. +|..+. +.++.++ .-|++.|++.++......|
T Consensus 97 ~~~~~~~--~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v 157 (356)
T PRK04870 97 LALACAK--PGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALV 157 (356)
T ss_pred HHHHhcC--CCCEEEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEE
Confidence 4445544 343322 2334433 3578889888875444444
No 190
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=94.15 E-value=0.36 Score=43.62 Aligned_cols=104 Identities=23% Similarity=0.302 Sum_probs=75.1
Q ss_pred ccCcccCCCCCccchHHHHHHH-HHcCCCccccccccCCchHHHHHHHH----HHHHhCCCcE-EEecchhHHHHHHHHH
Q psy16850 58 CSNDYLGMSCHPKVKSAVREAL-EKFGTGAGGTRNISGNSLFHEKLEED----VARLHQKEAG-LVFTSCYVANDSTLFT 131 (174)
Q Consensus 58 ~SndYLGL~~~p~v~~a~~~al-~~~G~gs~~Sr~~~G~~~~~~~LE~~----lA~~~g~e~a-l~f~sGy~aN~~~i~a 131 (174)
+|-||- +|.|.+|.-..+ .+|.-|.-|-|...| +...+++|.. ..++||.+-| +==.||-.||++++.|
T Consensus 33 ASEN~~----S~aV~~A~gS~ltnKYAEGyPgkRyYgG-ce~VD~vE~laierak~LFga~~anVQPhSGs~AN~av~~A 107 (413)
T COG0112 33 ASENFT----SPAVMEAQGSDLTNKYAEGYPGKRYYGG-CEYVDEVEELAIERAKKLFGAEYANVQPHSGSQANQAVYLA 107 (413)
T ss_pred eccccC----CHHHHHHHhhhhhhccccCCCCccccCC-CeeHHHHHHHHHHHHHHHhCCCccccCCCCchHHHHHHHHH
Confidence 566664 566888876654 679999999998766 4566666653 4578898877 4456999999999999
Q ss_pred hcccCCCCe-----------eE-----------EEEEEecCC------CHHHHHHHHHHhccccc
Q psy16850 132 LGKMIPYFT-----------EL-----------IYFYRFLAN------TTDIIKEASKELQEDMI 168 (174)
Q Consensus 132 L~~~~~g~~-----------~s-----------~~~~~f~HN------d~~~Le~~L~~~~~~~~ 168 (174)
|.+ ||+. ++ -.++.|.=+ |+|.++++.++.+|..|
T Consensus 108 ll~--pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e~kPK~i 170 (413)
T COG0112 108 LLQ--PGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPKLI 170 (413)
T ss_pred HcC--CCCeEecccCCCCCcccCCCCCCccceeEEeEecccccccCccCHHHHHHHHHHhCCCEE
Confidence 987 3432 22 133444434 89999999999998766
No 191
>KOG1402|consensus
Probab=94.14 E-value=0.2 Score=44.59 Aligned_cols=109 Identities=20% Similarity=0.156 Sum_probs=81.6
Q ss_pred ecCCeeEEEeccCcccCCC--C-CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHH
Q psy16850 48 TDSEKEVTVYCSNDYLGMS--C-HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVA 124 (174)
Q Consensus 48 ~~~g~~~inf~SndYLGL~--~-~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~a 124 (174)
-.+|+++++|-|- |=-.+ + ||.|+++.++..++.-.. ||.++ .++.-+.|+.++++||.+..+-.++|-.|
T Consensus 55 D~eGk~ylDflsa-ysaVnqGhchpki~~aLqeq~~kLtls---srafY--nd~~~~f~~~vt~lf~~~kvlpmnTGaEa 128 (427)
T KOG1402|consen 55 DPEGKEYLDFLSA-YSAVNQGHCHPKIIKALQEQADKLTLS---SRAFY--NDVLGEFAEYVTKLFGYDKVLPMNTGAEA 128 (427)
T ss_pred CCCccchhhhhhh-hhhcccCCCCHHHHHHHHHHHhHhhhh---hHHHh--hhhHHHHHHHHHHhcCcceeeecccchhH
Confidence 4578999987653 43333 2 999999999988875543 46654 57899999999999999999999999999
Q ss_pred HHHHHHHhcc------cCC--------------CCeeE-------------------EEEEEecCCCHHHHHHHHHH
Q psy16850 125 NDSTLFTLGK------MIP--------------YFTEL-------------------IYFYRFLANTTDIIKEASKE 162 (174)
Q Consensus 125 N~~~i~aL~~------~~~--------------g~~~s-------------------~~~~~f~HNd~~~Le~~L~~ 162 (174)
+=+++...-. .+| |-.++ ..+...+-||.++||..|+.
T Consensus 129 ~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y~d~eale~~l~~ 205 (427)
T KOG1402|consen 129 VETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPYGDAEALEVALKS 205 (427)
T ss_pred HHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeeccCCHHHHHHHhcC
Confidence 9998876542 122 11111 12567788999999999987
No 192
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=94.12 E-value=0.23 Score=45.06 Aligned_cols=80 Identities=14% Similarity=0.127 Sum_probs=60.3
Q ss_pred ecCCeeEEEeccCcc---cCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--CcEEEecchh
Q psy16850 48 TDSEKEVTVYCSNDY---LGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--EAGLVFTSCY 122 (174)
Q Consensus 48 ~~~g~~~inf~SndY---LGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--e~al~f~sGy 122 (174)
..+|+++|+|.|.-. ||-+ ||+|.+|+.+.+++.+..... . -.++...+|-++|++..+. +.+.+.+||-
T Consensus 50 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~~~~~~-~---~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGs 124 (453)
T PRK06943 50 DRDGRRYLDAISSWWVNLFGHA-NPRINAALKDQLDTLEHAMLA-G---CTHEPAIELAERLAALTGGTLGHAFFASDGA 124 (453)
T ss_pred eCCCCEEEEcchHHHHhcCCCC-CHHHHHHHHHHHHhcCCcccc-c---cCCHHHHHHHHHHHHhCCCCCCEEEEeCCCH
Confidence 368999999977632 4433 899999999999886543221 1 1356788899999998863 4788889999
Q ss_pred HHHHHHHHHh
Q psy16850 123 VANDSTLFTL 132 (174)
Q Consensus 123 ~aN~~~i~aL 132 (174)
.||-+.|..-
T Consensus 125 eAve~AlKlA 134 (453)
T PRK06943 125 SAVEIALKMS 134 (453)
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 193
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=94.09 E-value=0.32 Score=43.40 Aligned_cols=79 Identities=20% Similarity=0.215 Sum_probs=57.6
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC---CCcEEEecch
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ---KEAGLVFTSC 121 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g---~e~al~f~sG 121 (174)
..+|+++|+|.+. .-||-+ ||+|.+|+.+.+++...... .....+...+|-++|++... .+.+.+++||
T Consensus 29 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~a~~~ql~~~~~~~~----~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sG 103 (420)
T TIGR00700 29 DVDGNRLIDFASGIAVLNIGHS-HPRVVDAVRTQVAEFTHTCF----MVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSG 103 (420)
T ss_pred eCCCCEEEECccCHHhccCCCC-CHHHHHHHHHHHHhccCccc----cccCChHHHHHHHHHHHhCCCCCCCEEEEeCCc
Confidence 3689999999776 234444 89999999999988542211 11134567788888888874 3678999999
Q ss_pred hHHHHHHHHH
Q psy16850 122 YVANDSTLFT 131 (174)
Q Consensus 122 y~aN~~~i~a 131 (174)
-.||-+.|..
T Consensus 104 seA~e~Alkl 113 (420)
T TIGR00700 104 AEAVENAVKI 113 (420)
T ss_pred HHHHHHHHHH
Confidence 9999988873
No 194
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=94.08 E-value=0.066 Score=47.17 Aligned_cols=78 Identities=22% Similarity=0.210 Sum_probs=56.9
Q ss_pred eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccc--cCCchHHHHHHHHHHHHhCCC-cEEEecchhHHHHHH
Q psy16850 52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNI--SGNSLFHEKLEEDVARLHQKE-AGLVFTSCYVANDST 128 (174)
Q Consensus 52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~--~G~~~~~~~LE~~lA~~~g~e-~al~f~sGy~aN~~~ 128 (174)
+.+++|.+|. +|+. .+.+.+++.+.++.|+.++++++.. .+...+++++|+ + +++|.+ +.++|++|...++.+
T Consensus 26 ~~~iyld~~a-~g~~-p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~l~g~~~~~v~~~~~~t~~l~~ 101 (406)
T TIGR01814 26 NAVIYLDGNS-LGLM-PKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLK-L-RLVGAKEDEVVVMNTLTINLHL 101 (406)
T ss_pred CCcEEecCCC-cCcC-cHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhcc-c-cccCCCCCcEEEeCCchHHHHH
Confidence 4578888888 8876 8888999999999998776656543 344567788877 4 899865 358888887776655
Q ss_pred -HHHhc
Q psy16850 129 -LFTLG 133 (174)
Q Consensus 129 -i~aL~ 133 (174)
+.++.
T Consensus 102 ~~~~~~ 107 (406)
T TIGR01814 102 LLASFY 107 (406)
T ss_pred HHHHhc
Confidence 55553
No 195
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=93.97 E-value=0.31 Score=43.61 Aligned_cols=78 Identities=21% Similarity=0.170 Sum_probs=57.4
Q ss_pred ecCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC-CCcEEEecchhH
Q psy16850 48 TDSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ-KEAGLVFTSCYV 123 (174)
Q Consensus 48 ~~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g-~e~al~f~sGy~ 123 (174)
..+|+++|+|.|.- -||-+ ||+|.+|+.+.+++.... + ... .+....+|-++|++... .+.+.+.+||-.
T Consensus 36 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~-~--~~~--~~~~~~~la~~L~~~~~~~~~v~f~~sGse 109 (408)
T PRK04612 36 DDQGREYLDLAAGIAVCGLGHN-DPDLVAALTEQAGKLWHT-S--NVF--YSAPPLKLAEELVTASRFAEKVFLCNSGTE 109 (408)
T ss_pred ECCCCEEEEcCccHhhccCCCC-CHHHHHHHHHHHHhcccc-c--ccc--CCHHHHHHHHHHHhhCCCCCEEEEcCchHH
Confidence 46899999997652 24443 999999999998874321 1 121 24667788888888774 467899999999
Q ss_pred HHHHHHHH
Q psy16850 124 ANDSTLFT 131 (174)
Q Consensus 124 aN~~~i~a 131 (174)
||-..|..
T Consensus 110 A~e~Alkl 117 (408)
T PRK04612 110 ANEAAIKL 117 (408)
T ss_pred HHHHHHHH
Confidence 99988863
No 196
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=93.92 E-value=0.39 Score=42.81 Aligned_cols=81 Identities=19% Similarity=0.107 Sum_probs=58.7
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC---CcEEEecch
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK---EAGLVFTSC 121 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~---e~al~f~sG 121 (174)
..+|+++|+|.+. .=||-+ ||+|.+++.+++++++... +.. .+ ++...+|-+.|++..+. +..++.+||
T Consensus 37 d~dG~~~lD~~~g~~~~~lGh~-~~~i~~a~~~~~~~~~~~~--~~~-~~-~~~~~~la~~l~~~~~~~~~~~~~f~~sG 111 (425)
T PRK08088 37 DVEGREYLDFAGGIAVLNTGHL-HPKVVAAVEAQLKKLSHTC--FQV-LA-YEPYLELCEKMNQKVPGDFAKKTLLVTTG 111 (425)
T ss_pred eCCCCEEEEcCCchhhcCCCCC-CHHHHHHHHHHHhhCCCcc--ccc-cC-CHHHHHHHHHHHHhCCCCCCCEEEEeCCc
Confidence 4689999999773 226654 9999999999998866321 111 22 34556888888888764 578999999
Q ss_pred hHHHHHHHHHhc
Q psy16850 122 YVANDSTLFTLG 133 (174)
Q Consensus 122 y~aN~~~i~aL~ 133 (174)
-.||-..+....
T Consensus 112 sea~e~Alklar 123 (425)
T PRK08088 112 SEAVENAVKIAR 123 (425)
T ss_pred HHHHHHHHHHHH
Confidence 999988877543
No 197
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=93.80 E-value=0.35 Score=43.99 Aligned_cols=80 Identities=13% Similarity=0.096 Sum_probs=55.1
Q ss_pred ecCCeeEEEeccCc-ccCCC-CCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC----cEEEe-cc
Q psy16850 48 TDSEKEVTVYCSND-YLGMS-CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE----AGLVF-TS 120 (174)
Q Consensus 48 ~~~g~~~inf~Snd-YLGL~-~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e----~al~f-~s 120 (174)
..+|+++|+|.|.- -+.|. .||+|.+|+.+.+++ +....+. . -..+...+|-++|++.+... ..++| +|
T Consensus 54 D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~-~~~~~~~-~--~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~S 129 (459)
T PRK06931 54 DVEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTS-GLPLHTL-D--LTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPS 129 (459)
T ss_pred eCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhh-hcccccc-c--cCCHHHHHHHHHHHHhCCCccccceEEEeCCC
Confidence 46899999998772 12233 399999999998865 2111111 1 13577788999999988532 24455 79
Q ss_pred hhHHHHHHHHH
Q psy16850 121 CYVANDSTLFT 131 (174)
Q Consensus 121 Gy~aN~~~i~a 131 (174)
|-.||-..|..
T Consensus 130 GsEAve~Alkl 140 (459)
T PRK06931 130 GADAVEAAIKL 140 (459)
T ss_pred cHHHHHHHHHH
Confidence 99999999874
No 198
>PRK07582 cystathionine gamma-lyase; Validated
Probab=93.72 E-value=0.14 Score=44.94 Aligned_cols=38 Identities=26% Similarity=0.251 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcc
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGK 134 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~ 134 (174)
.+.+.+||++||++. .+++++|+||..|+..++.++.+
T Consensus 50 ~p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~l~all~ 87 (366)
T PRK07582 50 NPTWRALEAALGELE-GAEALVFPSGMAAITAVLRALLR 87 (366)
T ss_pred CccHHHHHHHHHHHc-CCCEEEECCHHHHHHHHHHHhcC
Confidence 356899999999999 68999999999999999988865
No 199
>PRK03321 putative aminotransferase; Provisional
Probab=93.60 E-value=1 Score=38.55 Aligned_cols=72 Identities=14% Similarity=0.032 Sum_probs=47.4
Q ss_pred eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc-EEEecchhHHH-HHHHH
Q psy16850 53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA-GLVFTSCYVAN-DSTLF 130 (174)
Q Consensus 53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~-al~f~sGy~aN-~~~i~ 130 (174)
.+|+|++| ...+...|.+++++.+++..+.. ++ ..-..+|++.+|+++|.+. .|++++|-... ..++.
T Consensus 23 ~~i~l~~~-~~~~~~~~~~~~a~~~~~~~~~~--------y~-~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~ 92 (352)
T PRK03321 23 GAIKLSSN-ETPFGPLPSVRAAIARAAAGVNR--------YP-DMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQ 92 (352)
T ss_pred cceeccCC-CCCCCCCHHHHHHHHHHHHhcCc--------CC-CCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHH
Confidence 47888887 34455567888888877653211 11 1237899999999998653 68888887664 34455
Q ss_pred Hhcc
Q psy16850 131 TLGK 134 (174)
Q Consensus 131 aL~~ 134 (174)
++.+
T Consensus 93 ~~~~ 96 (352)
T PRK03321 93 ATAG 96 (352)
T ss_pred HhcC
Confidence 5554
No 200
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=93.57 E-value=0.56 Score=42.16 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=68.0
Q ss_pred HHHHHHHHHhCCCCceeeecccccCCCCceeeec--CCeeEEEeccC---cccCCCCCccch--HHHHHHHHHcCCCccc
Q psy16850 16 HEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTD--SEKEVTVYCSN---DYLGMSCHPKVK--SAVREALEKFGTGAGG 88 (174)
Q Consensus 16 ~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~--~g~~~inf~Sn---dYLGL~~~p~v~--~a~~~al~~~G~gs~~ 88 (174)
.+.|.+..-.+-++.+..+.+..+ .++.. +|+++|+|.|. .-||- .||+|. +|+.+.+++......+
T Consensus 5 ~~~~~~~~~~~~~p~~~~~~~a~G-----~~l~D~~dG~~ylD~~~g~~~~~lGh-~~p~v~~~~ai~~q~~~~~~~~~~ 78 (431)
T TIGR03251 5 HEVLSRHMLTDGFDLVLDLDRSRG-----SVLVDARDGRRYLDMFSFFASMALGM-NHPALVDDLAFRARLGAAAVNKPS 78 (431)
T ss_pred HHHHHHHhhccCCceeeEEEeccC-----CEEEECCCCCChhhcccChhhcCCCC-CChhhhHHHHHHHHHHHhhhcccc
Confidence 345566666666666554454432 33343 79999999664 23442 399999 8988888764311111
Q ss_pred cccccCCchHHHHHHHHHHHHh---CCCcEEEecchhHHHHHHHHHh
Q psy16850 89 TRNISGNSLFHEKLEEDVARLH---QKEAGLVFTSCYVANDSTLFTL 132 (174)
Q Consensus 89 Sr~~~G~~~~~~~LE~~lA~~~---g~e~al~f~sGy~aN~~~i~aL 132 (174)
+... ......+|-++|++.. +.+.+.+.+||-.||-+.|..-
T Consensus 79 ~~~~--~~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAve~AlklA 123 (431)
T TIGR03251 79 NSDV--YTVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTA 123 (431)
T ss_pred cCCC--CCHHHHHHHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHH
Confidence 1111 2455566666677765 3467889999999999988754
No 201
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=93.52 E-value=0.46 Score=42.89 Aligned_cols=45 Identities=29% Similarity=0.274 Sum_probs=39.9
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL 142 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s 142 (174)
.+....||+.+|++-|.+.|+.|+||..|-..++-++.+ +|+++.
T Consensus 62 nPT~~~lE~~~a~LEg~~~~~afsSGmaAI~~~~l~ll~--~GD~vl 106 (396)
T COG0626 62 NPTRDALEEALAELEGGEDAFAFSSGMAAISTALLALLK--AGDHVL 106 (396)
T ss_pred CccHHHHHHHHHHhhCCCcEEEecCcHHHHHHHHHHhcC--CCCEEE
Confidence 578999999999999999999999999999998888876 566654
No 202
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=93.49 E-value=0.17 Score=44.51 Aligned_cols=43 Identities=19% Similarity=0.020 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE
Q psy16850 97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL 142 (174)
Q Consensus 97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s 142 (174)
+...+||+.||++.|.+.+++++||-.|...++. +.+ +|+++.
T Consensus 54 p~~~~le~~lA~leg~~~~v~~~sG~aAi~~~l~-~l~--~GD~VI 96 (364)
T PRK07269 54 PTRAKLEETLAAIESADYALATSSGMSAIVLAFS-VFP--VGSKVV 96 (364)
T ss_pred ccHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHH-HhC--CCCEEE
Confidence 6689999999999999999999999999998885 444 566554
No 203
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=93.33 E-value=0.44 Score=43.45 Aligned_cols=79 Identities=11% Similarity=0.085 Sum_probs=54.7
Q ss_pred ecCCeeEEEeccCc-ccCCCC-CccchHHHHHHHHH-cCCCccccccccCCchHHHHHHHHHHHHhCCC-----cEEEe-
Q psy16850 48 TDSEKEVTVYCSND-YLGMSC-HPKVKSAVREALEK-FGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-----AGLVF- 118 (174)
Q Consensus 48 ~~~g~~~inf~Snd-YLGL~~-~p~v~~a~~~al~~-~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-----~al~f- 118 (174)
..+|+++|+|.+.- -+.|.+ ||+|.+|+.+.+++ ..... . .-.++...+|-++|++.+..+ ...+|
T Consensus 59 D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~--~---~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~ 133 (464)
T PRK06938 59 DVEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLHT--L---DLTTPVKDQFVQDLFASLPEAFAREAKIQFCG 133 (464)
T ss_pred eCCCCEEEEccCCccccccCCCCHHHHHHHHHHHHhhhcccc--c---ccCCHHHHHHHHHHHHhCcccccccceEEEeC
Confidence 46899999997652 233443 99999999998864 22221 1 113577788888888876432 45565
Q ss_pred cchhHHHHHHHHH
Q psy16850 119 TSCYVANDSTLFT 131 (174)
Q Consensus 119 ~sGy~aN~~~i~a 131 (174)
+||-.||-+.|..
T Consensus 134 ~SGSEAve~Alkl 146 (464)
T PRK06938 134 PTGTDAVEAALKL 146 (464)
T ss_pred CCcHHHHHHHHHH
Confidence 6999999999884
No 204
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=93.03 E-value=0.72 Score=42.28 Aligned_cols=78 Identities=9% Similarity=-0.008 Sum_probs=53.0
Q ss_pred ecCCeeEEEeccC---cccCCCCCccchHHHHHH--HHHcCCCccccccccCCchHHHHHHHHHHH----Hh--CCCcEE
Q psy16850 48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREA--LEKFGTGAGGTRNISGNSLFHEKLEEDVAR----LH--QKEAGL 116 (174)
Q Consensus 48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~a--l~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~----~~--g~e~al 116 (174)
..+|+++|+|.|. .-|| ..||+|.+|+.+. ...+-..+ . . .+....+|.++|++ .. +.+.+.
T Consensus 54 D~dG~~ylD~~sg~~~~~lG-h~~p~i~~Ai~~q~~~~~l~~~~---~--~-~~~~~~~la~~l~~~l~~~~p~~~~~v~ 126 (464)
T TIGR00699 54 DVDGNRLLDLYSQISSIPIG-YNNPALLKAAQSPEMATTLINRP---A--L-GNFPSKDWAKILKEGILKVAPKGQDQVW 126 (464)
T ss_pred eCCCCEEEEccCCHhhhcCC-CCCHHHHHHHHHHHHHHhhcccc---c--C-CcHHHHHHHHHHHHhHHhhCCCCcCEEE
Confidence 4689999999874 3455 2499999999984 33322111 1 1 23456677777654 54 346788
Q ss_pred EecchhHHHHHHHHHh
Q psy16850 117 VFTSCYVANDSTLFTL 132 (174)
Q Consensus 117 ~f~sGy~aN~~~i~aL 132 (174)
+.+||-.||-+.|..-
T Consensus 127 f~~SGsEAvE~AlKlA 142 (464)
T TIGR00699 127 TGMSGSDANELAFKAA 142 (464)
T ss_pred EeCCcHHHHHHHHHHH
Confidence 8999999999988754
No 205
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=92.80 E-value=0.22 Score=36.87 Aligned_cols=36 Identities=33% Similarity=0.381 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHh--CCCcEEEecchhHHHHHHHHHhcc
Q psy16850 99 HEKLEEDVARLH--QKEAGLVFTSCYVANDSTLFTLGK 134 (174)
Q Consensus 99 ~~~LE~~lA~~~--g~e~al~f~sGy~aN~~~i~aL~~ 134 (174)
++++++.+++++ +.+.+++.++|..|+..++.++..
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~ 39 (170)
T cd01494 2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLG 39 (170)
T ss_pred HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCC
Confidence 578999999999 999999999999999999999965
No 206
>PRK05957 aspartate aminotransferase; Provisional
Probab=92.77 E-value=2 Score=37.61 Aligned_cols=79 Identities=10% Similarity=0.063 Sum_probs=50.4
Q ss_pred eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC----CcEEEecchhHH-HHH
Q psy16850 53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK----EAGLVFTSCYVA-NDS 127 (174)
Q Consensus 53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~----e~al~f~sGy~a-N~~ 127 (174)
.+++|+.++.= +...+.+++|+.+.+..... ..-....|...+.+.+.+.+++++|. ++.|++++|-.. -..
T Consensus 28 ~~~~l~~g~~~-~~~~~~~~~a~~~~~~~~~~--~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~ 104 (389)
T PRK05957 28 GTISLGQGVVS-YPPPPEAIEALNNFLANPEN--HKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMN 104 (389)
T ss_pred CeEEccCCCCC-CCCCHHHHHHHHHHHhCCCC--CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHH
Confidence 35777765432 44567777777776653322 11223467788999999999999985 567888888643 334
Q ss_pred HHHHhcc
Q psy16850 128 TLFTLGK 134 (174)
Q Consensus 128 ~i~aL~~ 134 (174)
++.++++
T Consensus 105 ~~~~~~~ 111 (389)
T PRK05957 105 AILAITD 111 (389)
T ss_pred HHHHhcC
Confidence 4555544
No 207
>PLN02656 tyrosine transaminase
Probab=92.32 E-value=1.9 Score=38.14 Aligned_cols=79 Identities=19% Similarity=0.183 Sum_probs=50.0
Q ss_pred CCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--------CcEEEe
Q psy16850 50 SEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--------EAGLVF 118 (174)
Q Consensus 50 ~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--------e~al~f 118 (174)
+|+.+|+|+--| +..+...+.+++++.++++.-.. .-++...-..+|.+.+|+|++. +..++.
T Consensus 29 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t 102 (409)
T PLN02656 29 NGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKF------NGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFIT 102 (409)
T ss_pred cCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCC------CCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEe
Confidence 466788887432 34566678889988888764211 1122223356788888888752 456666
Q ss_pred cchhHHHHHHHHHhcc
Q psy16850 119 TSCYVANDSTLFTLGK 134 (174)
Q Consensus 119 ~sGy~aN~~~i~aL~~ 134 (174)
+.+-.+-..++.++++
T Consensus 103 ~G~~~al~~~~~~l~~ 118 (409)
T PLN02656 103 SGCTQAIDVALSMLAR 118 (409)
T ss_pred CChHHHHHHHHHHHhC
Confidence 6667776667777765
No 208
>PRK07683 aminotransferase A; Validated
Probab=92.27 E-value=2 Score=37.47 Aligned_cols=75 Identities=15% Similarity=0.065 Sum_probs=48.3
Q ss_pred eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--------CC-cEEEecchh
Q psy16850 52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--------KE-AGLVFTSCY 122 (174)
Q Consensus 52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--------~e-~al~f~sGy 122 (174)
..+|+|+.++ -.+...+.+++++.+++.....+ ++...-..+|++++|+|++ .+ ..++.+++.
T Consensus 28 ~~~i~l~~~~-p~~~~~~~~~~a~~~~~~~~~~~-------Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~ 99 (387)
T PRK07683 28 DNLISLTIGQ-PDFPTPSHVKEAAKRAITENYTS-------YTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGAS 99 (387)
T ss_pred CCeEEecCCC-CCCCCCHHHHHHHHHHHhcCCCC-------CCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChH
Confidence 4578888885 44555677888888887642211 2222336788889999883 22 345555558
Q ss_pred HHHHHHHHHhcc
Q psy16850 123 VANDSTLFTLGK 134 (174)
Q Consensus 123 ~aN~~~i~aL~~ 134 (174)
.|...++.++.+
T Consensus 100 ~al~~~~~~l~~ 111 (387)
T PRK07683 100 EAIDIAFRTILE 111 (387)
T ss_pred HHHHHHHHHhCC
Confidence 887778888764
No 209
>PRK08354 putative aminotransferase; Provisional
Probab=91.78 E-value=2.5 Score=35.81 Aligned_cols=92 Identities=13% Similarity=0.088 Sum_probs=58.4
Q ss_pred eeEEEeccC-cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHH
Q psy16850 52 KEVTVYCSN-DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLF 130 (174)
Q Consensus 52 ~~~inf~Sn-dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~ 130 (174)
..+|+|++| |.++ .|.+++++.++++.. . ..+....|++++|+++|.+ |+.++|-.--+.++.
T Consensus 8 ~~~i~l~~~~np~~---p~~~~~a~~~~~~~~----------~-~yp~~~~l~~~ia~~~~~~--I~vt~G~~~al~~~~ 71 (311)
T PRK08354 8 EGLIDFSASVNPYP---PEWLDEMFERAKEIS----------G-RYTYYEWLEEEFSKLFGEP--IVITAGITEALYLIG 71 (311)
T ss_pred cceeEecCCCCCCC---CHHHHHHHHHHHHHh----------h-cCCChHHHHHHHHHHHCCC--EEECCCHHHHHHHHH
Confidence 458999999 7664 367777777665421 1 1234678999999999953 667777666555555
Q ss_pred HhcccCCCCeeE-----------------EEEEEecCCCHHHHHHHHHH
Q psy16850 131 TLGKMIPYFTEL-----------------IYFYRFLANTTDIIKEASKE 162 (174)
Q Consensus 131 aL~~~~~g~~~s-----------------~~~~~f~HNd~~~Le~~L~~ 162 (174)
.+.. +|..+. +++.. -..|++.|++.+++
T Consensus 72 ~~~~--~gd~vlv~~P~y~~~~~~~~~~g~~~~~-~~~d~~~l~~~~~~ 117 (311)
T PRK08354 72 ILAL--RDRKVIIPRHTYGEYERVARFFAARIIK-GPNDPEKLEELVER 117 (311)
T ss_pred HhhC--CCCeEEEeCCCcHHHHHHHHHcCCEEee-cCCCHHHHHHhhcC
Confidence 5433 444333 13333 35788888887763
No 210
>PRK08068 transaminase; Reviewed
Probab=91.76 E-value=2.6 Score=36.69 Aligned_cols=77 Identities=13% Similarity=-0.066 Sum_probs=47.1
Q ss_pred CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----CC---Cc-EEEecchh
Q psy16850 51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----QK---EA-GLVFTSCY 122 (174)
Q Consensus 51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g~---e~-al~f~sGy 122 (174)
++.+|+|+.|+. ++...|.+++++.++++.... ..++...-+.+|.+++|+|+ |. ++ -|+.++|.
T Consensus 31 ~~~~i~l~~~~p-~~~~~~~~~~~~~~~~~~~~~------~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~ 103 (389)
T PRK08068 31 GHDVINLGQGNP-DQPTPEHIVEALQEAAENPAN------HKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGG 103 (389)
T ss_pred CCCeEEecCCCC-CCCCCHHHHHHHHHHHhCCCC------CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCc
Confidence 456899999975 556678888888887753110 11222233677888888887 42 22 45666665
Q ss_pred HHHH-HHHHHhcc
Q psy16850 123 VAND-STLFTLGK 134 (174)
Q Consensus 123 ~aN~-~~i~aL~~ 134 (174)
...+ .++.++++
T Consensus 104 ~~~l~~~~~~~~~ 116 (389)
T PRK08068 104 KAGLVELPQCLMN 116 (389)
T ss_pred HHHHHHHHHHhCC
Confidence 4443 44566654
No 211
>PRK06207 aspartate aminotransferase; Provisional
Probab=91.67 E-value=4.8 Score=35.53 Aligned_cols=81 Identities=12% Similarity=0.032 Sum_probs=47.1
Q ss_pred eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC-----CcEEEecchhHHHH
Q psy16850 52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK-----EAGLVFTSCYVAND 126 (174)
Q Consensus 52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~-----e~al~f~sGy~aN~ 126 (174)
...++|+.-+.=-+...|.+++++.+++...+...- .-..|...+.+.+-+.+++++|. +..++.+.+-.+-.
T Consensus 39 ~~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~Y--~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~ 116 (405)
T PRK06207 39 GRPVDFSHGDVDAHEPTPGAFELFSAGVERGGVQAY--TEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALF 116 (405)
T ss_pred CCceecCCcCCCCCCCCHHHHHHHHHHHhcCCCccC--CCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence 346777743221124467888888888765432111 11245566666777777776673 34555555566666
Q ss_pred HHHHHhcc
Q psy16850 127 STLFTLGK 134 (174)
Q Consensus 127 ~~i~aL~~ 134 (174)
.++.+|+.
T Consensus 117 ~~~~~l~~ 124 (405)
T PRK06207 117 LAVAATVA 124 (405)
T ss_pred HHHHHhcC
Confidence 67777765
No 212
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=91.64 E-value=0.68 Score=40.84 Aligned_cols=56 Identities=21% Similarity=0.317 Sum_probs=41.6
Q ss_pred ccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHh
Q psy16850 69 PKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTL 132 (174)
Q Consensus 69 p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL 132 (174)
++.++++.++++. | .++|..+..+++|+.+++++|.+.++++++|..|-..++.++
T Consensus 11 ~~e~~a~~~~~~~-~-------~~~~~g~~~~~~e~~la~~~g~~~~v~~~sgt~aL~~~l~al 66 (376)
T TIGR02379 11 GQELEYIAEAISE-G-------KLSGDGPFSRRCETWLENRTGTKKALLTPSCTAALEMAALLL 66 (376)
T ss_pred HHHHHHHHHHHHc-C-------CccCCcHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHc
Confidence 4446666666543 1 124455789999999999999999999999999866666665
No 213
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=91.50 E-value=1.7 Score=37.20 Aligned_cols=59 Identities=17% Similarity=0.000 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhCCC-cEEEecchhHHHHHHHHHhcccCCCCeeE-----------------EEEEEecCCCHHHHHHHH
Q psy16850 99 HEKLEEDVARLHQKE-AGLVFTSCYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLANTTDIIKEAS 160 (174)
Q Consensus 99 ~~~LE~~lA~~~g~e-~al~f~sGy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~HNd~~~Le~~L 160 (174)
..+|++.||+++|.+ +.+++++|-...+.++..+.. +| ... ++++.++ |+++|++.+
T Consensus 49 ~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~l~--~g-~vl~~~p~y~~~~~~~~~~g~~~~~~~--d~~~l~~~~ 123 (330)
T TIGR01140 49 YDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRLLA--PG-RVLVLAPTYSEYARAWRAAGHEVVELP--DLDRLPAAL 123 (330)
T ss_pred HHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHhC--CC-eEEEeCCCcHHHHHHHHHcCCEEEEeC--CHHHHHhhc
Confidence 489999999999975 789999999988888766653 33 221 2455555 888888877
Q ss_pred HH
Q psy16850 161 KE 162 (174)
Q Consensus 161 ~~ 162 (174)
++
T Consensus 124 ~~ 125 (330)
T TIGR01140 124 EE 125 (330)
T ss_pred cc
Confidence 43
No 214
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=91.48 E-value=1.2 Score=38.20 Aligned_cols=64 Identities=25% Similarity=0.315 Sum_probs=43.7
Q ss_pred CccchHHHHHHHHH-cCCCccccccc-cC--CchHHHHHHHHHHHHhCCC-cEEEecchh-HHHHHHHHHhc
Q psy16850 68 HPKVKSAVREALEK-FGTGAGGTRNI-SG--NSLFHEKLEEDVARLHQKE-AGLVFTSCY-VANDSTLFTLG 133 (174)
Q Consensus 68 ~p~v~~a~~~al~~-~G~gs~~Sr~~-~G--~~~~~~~LE~~lA~~~g~e-~al~f~sGy-~aN~~~i~aL~ 133 (174)
++.+++++.+.+.. ++ ..+++.. .+ ...++++++++||+++|.+ +.++|++|. .++..++.++.
T Consensus 11 ~~~v~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~ 80 (353)
T TIGR03235 11 DPAVAEAMLPWLLEEFG--NPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLA 80 (353)
T ss_pred CHHHHHHHHHHHHhcCC--CCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHH
Confidence 67788888887754 43 3333322 12 2367899999999999975 467777764 57777777765
No 215
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=91.19 E-value=0.77 Score=41.49 Aligned_cols=105 Identities=25% Similarity=0.319 Sum_probs=60.4
Q ss_pred ccCcccCCCCCccchHHHHHHH-HHcCCCccccccccCCchHHHHHH----HHHHHHhCCC----cE-EEecchhHHHHH
Q psy16850 58 CSNDYLGMSCHPKVKSAVREAL-EKFGTGAGGTRNISGNSLFHEKLE----EDVARLHQKE----AG-LVFTSCYVANDS 127 (174)
Q Consensus 58 ~SndYLGL~~~p~v~~a~~~al-~~~G~gs~~Sr~~~G~~~~~~~LE----~~lA~~~g~e----~a-l~f~sGy~aN~~ 127 (174)
+|-||+ +|.++++.-..+ .+|--|.-|.|...| .....++| +.+.++||.+ -| +=.-||-.||++
T Consensus 27 aSEN~~----Sp~v~~al~S~l~nkyaeg~pg~ryy~G-~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~a 101 (399)
T PF00464_consen 27 ASENYM----SPAVREALGSDLTNKYAEGYPGKRYYGG-CEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQANLA 101 (399)
T ss_dssp TT---------HHHHHHHTSGGGGS-TTEETTEESSSS-THHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHHH
T ss_pred Cccccc----CHHHHHHhCCcceeeccccCCCcccccC-cchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHHHHH
Confidence 355554 455555543332 456667777787665 45566655 4567889998 55 557899999999
Q ss_pred HHHHhcccCCCCeeE---------------------------EEEEEecCC------CHHHHHHHHHHhcccccc
Q psy16850 128 TLFTLGKMIPYFTEL---------------------------IYFYRFLAN------TTDIIKEASKELQEDMID 169 (174)
Q Consensus 128 ~i~aL~~~~~g~~~s---------------------------~~~~~f~HN------d~~~Le~~L~~~~~~~~~ 169 (174)
++.+|.+ ||+++. -.++.|+=+ |++.|++++++..|..|=
T Consensus 102 v~~aLl~--pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi 174 (399)
T PF00464_consen 102 VYMALLK--PGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEHKPKLII 174 (399)
T ss_dssp HHHHHT---TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH--SEEE
T ss_pred HHHHHHh--hcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhcCCCEEE
Confidence 9999987 444332 134455534 899999999999987763
No 216
>PRK07550 hypothetical protein; Provisional
Probab=91.15 E-value=6 Score=34.35 Aligned_cols=104 Identities=15% Similarity=0.014 Sum_probs=56.9
Q ss_pred CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC-------CCcEEEecch-h
Q psy16850 51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ-------KEAGLVFTSC-Y 122 (174)
Q Consensus 51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g-------~e~al~f~sG-y 122 (174)
+...++|++++ ..+...+.+.++..+++.. +.. ..++...-..+|++.+|++++ .++.|++++| -
T Consensus 28 ~~~~i~l~~~~-~~~~~~~~~~~~~~~~~~~---~~~---~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~ 100 (386)
T PRK07550 28 DGPLIDLSQAV-PGYPPPPELLRALAEAAAD---PAA---HLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCN 100 (386)
T ss_pred CCCeEEeCCCC-CCCCCCHHHHHHHHHHHhC---cCC---cCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcH
Confidence 34578888886 4444566677777666531 111 111222225566666666653 2345777777 4
Q ss_pred HHHHHHHHHhcccCCCCeeE-----------------EEEEEec----CC---CHHHHHHHHHHh
Q psy16850 123 VANDSTLFTLGKMIPYFTEL-----------------IYFYRFL----AN---TTDIIKEASKEL 163 (174)
Q Consensus 123 ~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~----HN---d~~~Le~~L~~~ 163 (174)
.+...++.++.+ +|+.+. +.++.++ ++ |.++||+.+++.
T Consensus 101 ~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~~ 163 (386)
T PRK07550 101 QAFWAAMVTLAG--AGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPR 163 (386)
T ss_pred HHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhccc
Confidence 566666667754 444332 1233332 22 678888888753
No 217
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=90.76 E-value=3.3 Score=37.08 Aligned_cols=78 Identities=13% Similarity=0.092 Sum_probs=49.7
Q ss_pred CeeEEEeccC--cccC-CCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--------CcEEEec
Q psy16850 51 EKEVTVYCSN--DYLG-MSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--------EAGLVFT 119 (174)
Q Consensus 51 g~~~inf~Sn--dYLG-L~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--------e~al~f~ 119 (174)
|+++|+|+.= +..+ +...|++++++.++++.-... -++...-..+|.+.+|++++. ++.++.+
T Consensus 51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~------~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~ 124 (430)
T PLN00145 51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYN------SYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTA 124 (430)
T ss_pred CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCC------CCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeC
Confidence 6678888764 3333 666788889888887642111 111222356788888888853 4566666
Q ss_pred chhHHHHHHHHHhcc
Q psy16850 120 SCYVANDSTLFTLGK 134 (174)
Q Consensus 120 sGy~aN~~~i~aL~~ 134 (174)
.+-.+...++.+|.+
T Consensus 125 G~~~al~l~~~~l~~ 139 (430)
T PLN00145 125 GCAQAIEIIMSVLAQ 139 (430)
T ss_pred CHHHHHHHHHHHhcC
Confidence 667777777778765
No 218
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=90.61 E-value=1.3 Score=39.98 Aligned_cols=85 Identities=22% Similarity=0.142 Sum_probs=68.6
Q ss_pred HHHHHHcC---CCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE----------
Q psy16850 76 REALEKFG---TGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------- 142 (174)
Q Consensus 76 ~~al~~~G---~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------- 142 (174)
..+...|+ .|.-=||+.+ +....||+.||.+=|.-.|+.++||.+|-.-+|-.|++ +|++.-
T Consensus 41 ~haa~lF~l~~~G~iYsRi~N---PT~~vlE~RiAaLEGG~aa~a~aSG~AA~~~ai~~la~--aGD~iVss~~LYGGT~ 115 (426)
T COG2873 41 DHAAALFGLKEPGNIYTRIMN---PTTDVLEERIAALEGGVAALAVASGQAAITYAILNLAG--AGDNIVSSSKLYGGTY 115 (426)
T ss_pred HHHHHHhCCCcCCceeeeccC---chHHHHHHHHHHhhcchhhhhhccchHHHHHHHHHhcc--CCCeeEeeccccCchH
Confidence 34455565 3666788865 77899999999999999999999999999999999987 455432
Q ss_pred -----------EEEEEecCCCHHHHHHHHHHhcc
Q psy16850 143 -----------IYFYRFLANTTDIIKEASKELQE 165 (174)
Q Consensus 143 -----------~~~~~f~HNd~~~Le~~L~~~~~ 165 (174)
+++......|++.+++.+++..+
T Consensus 116 ~lf~~tl~~~Gi~v~fvd~~d~~~~~~aI~~nTk 149 (426)
T COG2873 116 NLFSHTLKRLGIEVRFVDPDDPENFEAAIDENTK 149 (426)
T ss_pred HHHHHHHHhcCcEEEEeCCCCHHHHHHHhCcccc
Confidence 36777889999999999887765
No 219
>PRK06348 aspartate aminotransferase; Provisional
Probab=90.29 E-value=4.1 Score=35.45 Aligned_cols=78 Identities=13% Similarity=0.053 Sum_probs=45.8
Q ss_pred eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--------CCcEEEecchhHH
Q psy16850 53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--------KEAGLVFTSCYVA 124 (174)
Q Consensus 53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--------~e~al~f~sGy~a 124 (174)
.+|+|+.++ ..+...|++++++.+.+.. + -.-++...-..+|.+.||+|+. .+..++.+.+..+
T Consensus 30 ~~i~l~~g~-p~~~~~~~~~~~~~~~~~~-~------~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~a 101 (384)
T PRK06348 30 DIIDLSLGD-PDLITDESIINAAFEDAKK-G------HTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHG 101 (384)
T ss_pred CcEEcCCCC-CCCCCCHHHHHHHHHHHhc-C------CCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHH
Confidence 468888764 3455567777766654422 1 1112333335678888888873 3455666666666
Q ss_pred HHHHHHHhcccCCCCe
Q psy16850 125 NDSTLFTLGKMIPYFT 140 (174)
Q Consensus 125 N~~~i~aL~~~~~g~~ 140 (174)
...++.++++ +|.+
T Consensus 102 l~~~~~~~~~--~gd~ 115 (384)
T PRK06348 102 MYLALQSILD--PGDE 115 (384)
T ss_pred HHHHHHHhcC--CCCE
Confidence 6677777765 4443
No 220
>PRK07682 hypothetical protein; Validated
Probab=90.28 E-value=3.7 Score=35.46 Aligned_cols=74 Identities=15% Similarity=0.073 Sum_probs=44.1
Q ss_pred eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC----C----C-cEEEecchhH
Q psy16850 53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ----K----E-AGLVFTSCYV 123 (174)
Q Consensus 53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g----~----e-~al~f~sGy~ 123 (174)
.+|+|+.++- .+...+.+++++.++++. +. .-++...-+.+|.+.+|+|++ . + ..++.+.|..
T Consensus 21 ~~i~l~~~~~-~~~~~~~~~~~~~~~~~~-~~------~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~ 92 (378)
T PRK07682 21 GVISLGVGEP-DFVTPWNVREASIRSLEQ-GY------TSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQ 92 (378)
T ss_pred CeEEeCCCCC-CCCCCHHHHHHHHHHHhc-CC------CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHH
Confidence 3678877653 344566678887777643 11 112222336677777777774 2 2 3555555577
Q ss_pred HHHHHHHHhcc
Q psy16850 124 ANDSTLFTLGK 134 (174)
Q Consensus 124 aN~~~i~aL~~ 134 (174)
|...++.++++
T Consensus 93 al~~~~~~l~~ 103 (378)
T PRK07682 93 ALDVAMRAIIN 103 (378)
T ss_pred HHHHHHHHhCC
Confidence 88888888865
No 221
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=90.22 E-value=1.8 Score=36.45 Aligned_cols=39 Identities=15% Similarity=0.104 Sum_probs=33.1
Q ss_pred chHHHHHHHHHHHHhCCCc----EEEecchhHHHHHHHHHhcc
Q psy16850 96 SLFHEKLEEDVARLHQKEA----GLVFTSCYVANDSTLFTLGK 134 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~----al~f~sGy~aN~~~i~aL~~ 134 (174)
..+.+++++.||+++|.++ .++.++|..++..++.++..
T Consensus 30 ~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~ 72 (355)
T TIGR03301 30 NDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVP 72 (355)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccC
Confidence 3789999999999999863 34678999999999998864
No 222
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=90.14 E-value=1.1 Score=39.17 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=52.4
Q ss_pred CeeEEEeccCccc---CCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC-------CCcEEEecc
Q psy16850 51 EKEVTVYCSNDYL---GMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ-------KEAGLVFTS 120 (174)
Q Consensus 51 g~~~inf~SndYL---GL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g-------~e~al~f~s 120 (174)
++.+++|+.++.- .+.-.+.+++++.++++... ..-++...-..+|.+.+|++++ .+..++.+.
T Consensus 30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~------~~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G 103 (401)
T TIGR01264 30 EKPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGK------YNGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSG 103 (401)
T ss_pred CCCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhccC------CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcC
Confidence 3568999998873 46678889999888776421 1112223335778889999987 345566666
Q ss_pred hhHHHHHHHHHhcc
Q psy16850 121 CYVANDSTLFTLGK 134 (174)
Q Consensus 121 Gy~aN~~~i~aL~~ 134 (174)
+-.+...++.+++.
T Consensus 104 ~~~al~~~~~~l~~ 117 (401)
T TIGR01264 104 CSHAIEMCIAALAN 117 (401)
T ss_pred hHHHHHHHHHHhCC
Confidence 67777777777765
No 223
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=89.83 E-value=5 Score=35.05 Aligned_cols=102 Identities=15% Similarity=0.064 Sum_probs=60.4
Q ss_pred eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC---------CcEEEecchh
Q psy16850 52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK---------EAGLVFTSCY 122 (174)
Q Consensus 52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~---------e~al~f~sGy 122 (174)
..+|+|++++ ..+...|.+.+++.+++... .. -++...-..+|++.+|++++. +..++.+.|-
T Consensus 30 ~~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~------~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~ 101 (391)
T PRK07309 30 PGILKLTLGE-PDFTTPDHVKEAAKRAIDAN-QS------HYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGAT 101 (391)
T ss_pred CCeEEcCCCC-CCCCCCHHHHHHHHHHHhcC-CC------CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChH
Confidence 3578888764 34555677888888776531 11 011122257888888888742 2455555556
Q ss_pred HHHHHHHHHhcccCCCCeeE-----------------EEEEEecC------CCHHHHHHHHHHh
Q psy16850 123 VANDSTLFTLGKMIPYFTEL-----------------IYFYRFLA------NTTDIIKEASKEL 163 (174)
Q Consensus 123 ~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~H------Nd~~~Le~~L~~~ 163 (174)
.+...++.++.+ +|..+. ++++.++. -|++.|++.+++.
T Consensus 102 ~al~~~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~ 163 (391)
T PRK07309 102 EALSASLTAILE--PGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQ 163 (391)
T ss_pred HHHHHHHHHhcC--CCCEEEEeCCCCcchHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhcc
Confidence 777777777765 233221 23444433 2678898888754
No 224
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=89.66 E-value=7.9 Score=33.74 Aligned_cols=75 Identities=12% Similarity=0.084 Sum_probs=49.5
Q ss_pred CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc-EEEecchhHHH-HH
Q psy16850 50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA-GLVFTSCYVAN-DS 127 (174)
Q Consensus 50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~-al~f~sGy~aN-~~ 127 (174)
+++.+|+|++|. -.+...|++++++.+++.... + + ...-+.+|-+.||+++|.+. -|++++|-..- ..
T Consensus 27 ~~~~~i~l~~ne-n~~~~~~~v~~a~~~~~~~~~------~--Y-p~~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~ 96 (366)
T PRK01533 27 GDHSFVKLASNE-NPFGCSPRVLDELQKSWLDHA------L--Y-PDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQI 96 (366)
T ss_pred CCCceEEeCCCC-CCCCCCHHHHHHHHHHHHhcC------c--C-CCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHH
Confidence 345789998876 357778899999888765421 1 1 11225779999999998643 57777775543 44
Q ss_pred HHHHhcc
Q psy16850 128 TLFTLGK 134 (174)
Q Consensus 128 ~i~aL~~ 134 (174)
++.++++
T Consensus 97 ~~~~l~~ 103 (366)
T PRK01533 97 ISRAVLK 103 (366)
T ss_pred HHHHhcC
Confidence 5556654
No 225
>PRK06107 aspartate aminotransferase; Provisional
Probab=89.20 E-value=3 Score=36.65 Aligned_cols=80 Identities=11% Similarity=0.071 Sum_probs=51.7
Q ss_pred CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc---EEEecchh-HHHH
Q psy16850 51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA---GLVFTSCY-VAND 126 (174)
Q Consensus 51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~---al~f~sGy-~aN~ 126 (174)
+..+++|+.++ -.+...|.+.+++.++++..-.+. ....|...+.+.+.+.+++++|.+. -+++++|- .|..
T Consensus 32 ~~~~i~l~~g~-p~~~~~~~~~~~~~~~~~~~~~~Y---~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 107 (402)
T PRK06107 32 GRSIVDLTVGE-PDFDTPDHIKQAAVAAIERGETKY---TLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIF 107 (402)
T ss_pred cCCEEEcCCCC-CCCCCCHHHHHHHHHHHHcCCCCC---CCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHH
Confidence 45678888765 455567888888888876421111 1224666777888888888877643 37777774 5555
Q ss_pred HHHHHhcc
Q psy16850 127 STLFTLGK 134 (174)
Q Consensus 127 ~~i~aL~~ 134 (174)
.++.++++
T Consensus 108 ~~~~~~~~ 115 (402)
T PRK06107 108 LALMATLE 115 (402)
T ss_pred HHHHHhcC
Confidence 56666654
No 226
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=88.89 E-value=5.5 Score=34.85 Aligned_cols=73 Identities=11% Similarity=-0.006 Sum_probs=45.1
Q ss_pred CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC-cEEEecchhHHHHHHH
Q psy16850 51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-AGLVFTSCYVANDSTL 129 (174)
Q Consensus 51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-~al~f~sGy~aN~~~i 129 (174)
+..+|+|++|. -.+...|.+++++.+. ... ..+.. ..+.+|.+.||+++|.+ +.|++++|....+.++
T Consensus 51 ~~~~i~l~~n~-~p~~~~~~v~~a~~~~-~~~--------~~Yp~-~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~ 119 (380)
T PLN03026 51 PEDIVKLDANE-NPYGPPPEVLEALGNM-KFP--------YVYPD-PESRRLRAALAEDSGLESENILVGCGADELIDLL 119 (380)
T ss_pred ccceEEccCCC-CCCCCCHHHHHHHHhh-Hhh--------ccCCC-CCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHH
Confidence 56789999983 1234457777765431 100 01222 23678999999999955 5688899877655444
Q ss_pred -HHhcc
Q psy16850 130 -FTLGK 134 (174)
Q Consensus 130 -~aL~~ 134 (174)
.++..
T Consensus 120 ~~~~~~ 125 (380)
T PLN03026 120 MRCVLD 125 (380)
T ss_pred HHHhcC
Confidence 45543
No 227
>PRK07681 aspartate aminotransferase; Provisional
Probab=88.83 E-value=9.4 Score=33.39 Aligned_cols=77 Identities=9% Similarity=0.065 Sum_probs=44.7
Q ss_pred CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC-------CC-cEEEecch
Q psy16850 50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ-------KE-AGLVFTSC 121 (174)
Q Consensus 50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g-------~e-~al~f~sG 121 (174)
.+..+|+|++|+ ..+...|.+++++.+++...... +-. ..|. .+|-+.||+|++ .+ +-|++++|
T Consensus 30 ~~~~~i~l~~g~-p~~~~~~~~~~~~~~~~~~~~~~--~y~-~~G~----~~lr~aia~~~~~~~g~~~~~~~~I~it~G 101 (399)
T PRK07681 30 AGHKMIDLSIGN-PDMPPADFVREEMVHTANQKESY--GYT-LSGI----QEFHEAVTEYYNNTHNVILNADKEVLLLMG 101 (399)
T ss_pred cCCCeEEeCCCC-CCCCCCHHHHHHHHHHHhccccC--CCC-CCCc----HHHHHHHHHHHHHHhCCCCCCCCeEEECCC
Confidence 356789999886 34556777888888776542111 000 1343 455566666664 22 46777777
Q ss_pred hHHHHHH-HHHhcc
Q psy16850 122 YVANDST-LFTLGK 134 (174)
Q Consensus 122 y~aN~~~-i~aL~~ 134 (174)
-..-+.. +.++++
T Consensus 102 ~~~al~~~~~~~~~ 115 (399)
T PRK07681 102 SQDGLVHLPMVYAN 115 (399)
T ss_pred cHHHHHHHHHHhCC
Confidence 6665544 345544
No 228
>PRK08960 hypothetical protein; Provisional
Probab=88.65 E-value=6 Score=34.43 Aligned_cols=76 Identities=17% Similarity=-0.050 Sum_probs=45.6
Q ss_pred CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--------CCcEEEecchh
Q psy16850 51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--------KEAGLVFTSCY 122 (174)
Q Consensus 51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--------~e~al~f~sGy 122 (174)
+..+++|..++- ++...+.+++++.+++.....+ ++...-..+|.+.||+|++ .+..++.+.+-
T Consensus 31 ~~~~i~l~~g~~-~~~~~~~v~~a~~~~~~~~~~~-------Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~ 102 (387)
T PRK08960 31 GHDVIHLEIGEP-DFTTAEPIVAAGQAALAAGHTR-------YTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGS 102 (387)
T ss_pred CCCeEEeCCCCC-CCCCCHHHHHHHHHHHhcCCCc-------cCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcH
Confidence 345788877754 5666788899988887631111 1112235678888888863 33444444455
Q ss_pred HHHHHHHHHhcc
Q psy16850 123 VANDSTLFTLGK 134 (174)
Q Consensus 123 ~aN~~~i~aL~~ 134 (174)
.+-..++.++..
T Consensus 103 ~al~~~~~~~~~ 114 (387)
T PRK08960 103 GALLLASSLLVD 114 (387)
T ss_pred HHHHHHHHHhcC
Confidence 555556666654
No 229
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=88.48 E-value=0.72 Score=42.47 Aligned_cols=42 Identities=17% Similarity=-0.045 Sum_probs=37.4
Q ss_pred cCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcc
Q psy16850 93 SGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGK 134 (174)
Q Consensus 93 ~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~ 134 (174)
+|..+-+.+||+.+|+++|+|.+|...+|=++|.-+++++++
T Consensus 70 Y~gdpSv~~Lee~vael~G~E~alpthqGRgaE~Il~~~~~~ 111 (467)
T TIGR02617 70 YSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIK 111 (467)
T ss_pred cccCchHHHHHHHHHHHhCCceEEECCCCchHHHHHHHhhcc
Confidence 445566789999999999999999999999999999988876
No 230
>PRK08363 alanine aminotransferase; Validated
Probab=87.92 E-value=3.3 Score=36.22 Aligned_cols=78 Identities=17% Similarity=0.066 Sum_probs=50.5
Q ss_pred CCeeEEEeccCccc--CCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC-------cEEEecc
Q psy16850 50 SEKEVTVYCSNDYL--GMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-------AGLVFTS 120 (174)
Q Consensus 50 ~g~~~inf~SndYL--GL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-------~al~f~s 120 (174)
.|..+|+|+..+=. +|...|.+++++.++++... ..++...-..+|++.||+|++.. +.+++++
T Consensus 28 ~~~~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~~~-------~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~ 100 (398)
T PRK08363 28 KGIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEGH-------NYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTA 100 (398)
T ss_pred cCCCeEEEeCCCCCcCCCCCCHHHHHHHHHHHHcCC-------CCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeC
Confidence 35678888877542 56668888998888775321 11233344788999999997432 2345555
Q ss_pred h-hHHHHHHHHHhcc
Q psy16850 121 C-YVANDSTLFTLGK 134 (174)
Q Consensus 121 G-y~aN~~~i~aL~~ 134 (174)
| -.+...++.++++
T Consensus 101 G~~~al~~~~~~~~~ 115 (398)
T PRK08363 101 AVTEALQLIFGALLD 115 (398)
T ss_pred CHHHHHHHHHHHhCC
Confidence 5 5577777777765
No 231
>PRK07324 transaminase; Validated
Probab=87.89 E-value=3.3 Score=36.07 Aligned_cols=75 Identities=23% Similarity=0.147 Sum_probs=48.6
Q ss_pred CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC---CCcEEEecchhHHHHH
Q psy16850 51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ---KEAGLVFTSCYVANDS 127 (174)
Q Consensus 51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g---~e~al~f~sGy~aN~~ 127 (174)
+..+++|+-.+-. +-..+.+ +++.++++....+.+.+ .| ..+|++.||+|++ .+..++.+.+..++..
T Consensus 25 ~~~~~~~~~~e~~-~~~~~~~-~~~~~~~~~~~~~Y~~~---~G----~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~ 95 (373)
T PRK07324 25 ESCIDSLTLEELL-ALAGKNP-EAFYQELGQKKLTYGWI---EG----SPEFKEAVASLYQNVKPENILQTNGATGANFL 95 (373)
T ss_pred cCCCCCCcHHHHH-hccCcch-HHHHHHHhcCCccCCCC---CC----CHHHHHHHHHHhcCCChhhEEEcCChHHHHHH
Confidence 4445666555543 3334456 88888887644433221 23 4589999999985 2456667777899999
Q ss_pred HHHHhcc
Q psy16850 128 TLFTLGK 134 (174)
Q Consensus 128 ~i~aL~~ 134 (174)
++.++++
T Consensus 96 ~~~~l~~ 102 (373)
T PRK07324 96 VLYALVE 102 (373)
T ss_pred HHHHhCC
Confidence 9999875
No 232
>PRK06836 aspartate aminotransferase; Provisional
Probab=87.86 E-value=7.7 Score=33.91 Aligned_cols=78 Identities=18% Similarity=0.095 Sum_probs=42.7
Q ss_pred eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC-------CcEEEecchh-H
Q psy16850 52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK-------EAGLVFTSCY-V 123 (174)
Q Consensus 52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~-------e~al~f~sGy-~ 123 (174)
..+++|++++ -.+...+.+.+++.+.++....+. ..++...-+.+|.+.||++++. ++-+++++|- .
T Consensus 33 ~~~~~l~~g~-p~~~~~~~v~~a~~~~~~~~~~~~----~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~ 107 (394)
T PRK06836 33 DNVFDFSLGN-PSVPPPAAVKEALRELAEEEDPGL----HGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAG 107 (394)
T ss_pred CCeEEecCcC-CCCCCCHHHHHHHHHHHhcCCcCc----ccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHH
Confidence 4578997764 444444566666666554321111 1123334467777888888752 3335555554 4
Q ss_pred HHHHHHHHhcc
Q psy16850 124 ANDSTLFTLGK 134 (174)
Q Consensus 124 aN~~~i~aL~~ 134 (174)
+-..++.++++
T Consensus 108 al~~~~~~l~~ 118 (394)
T PRK06836 108 ALNVALKAILN 118 (394)
T ss_pred HHHHHHHHhcC
Confidence 44455666654
No 233
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=87.27 E-value=11 Score=32.44 Aligned_cols=73 Identities=12% Similarity=0.037 Sum_probs=45.9
Q ss_pred EEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC-cEEEecchhHHHH-HHHHH
Q psy16850 54 VTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-AGLVFTSCYVAND-STLFT 131 (174)
Q Consensus 54 ~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-~al~f~sGy~aN~-~~i~a 131 (174)
.+.|++|+= .+...|.+++++.+++...+.. + ++. ....+|++.||++++.+ +.+++++|-..-+ .++.+
T Consensus 24 ~~~l~~~~~-~~~~p~~~~~a~~~~~~~~~~~----~--y~~-~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~ 95 (351)
T PRK14807 24 KYKMDANET-PFELPEEVIKNIQEIVKSSQVN----I--YPD-PTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLA 95 (351)
T ss_pred eeEccCCCC-CCCCCHHHHHHHHHHhhcCccc----C--CCC-ccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHH
Confidence 356666553 5666788888887766422111 1 111 23588999999999864 5688888877643 34455
Q ss_pred hcc
Q psy16850 132 LGK 134 (174)
Q Consensus 132 L~~ 134 (174)
++.
T Consensus 96 l~~ 98 (351)
T PRK14807 96 FIN 98 (351)
T ss_pred hcC
Confidence 544
No 234
>PRK07777 aminotransferase; Validated
Probab=86.78 E-value=12 Score=32.49 Aligned_cols=74 Identities=18% Similarity=0.049 Sum_probs=43.1
Q ss_pred eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHH----hCCC-----cEEEecchhH
Q psy16850 53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARL----HQKE-----AGLVFTSCYV 123 (174)
Q Consensus 53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~----~g~e-----~al~f~sGy~ 123 (174)
..+||+..+ ......+.+.+++.+++.. +. .-++...-..+|++.+|++ +|.+ ..++.++|-.
T Consensus 25 ~~i~l~~g~-p~~~~~~~~~~~~~~~~~~-~~------~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~ 96 (387)
T PRK07777 25 GAVNLGQGF-PDEDGPPEMLEAAQEAIAG-GV------NQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATE 96 (387)
T ss_pred CeEEccCCC-CCCCCCHHHHHHHHHHHhc-CC------CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHH
Confidence 467887765 4555556677776666543 11 1122222355666677765 5642 3566666677
Q ss_pred HHHHHHHHhcc
Q psy16850 124 ANDSTLFTLGK 134 (174)
Q Consensus 124 aN~~~i~aL~~ 134 (174)
++..++.++++
T Consensus 97 al~~~~~~~~~ 107 (387)
T PRK07777 97 AIAAAVLGLVE 107 (387)
T ss_pred HHHHHHHHhcC
Confidence 87777887765
No 235
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=86.75 E-value=2.4 Score=36.85 Aligned_cols=66 Identities=15% Similarity=0.120 Sum_probs=45.6
Q ss_pred CccchHHHHHHHHHcCCCccccccccCC-----chHHHHHHHHHHHHhCCC--cEEEe--cchhHHHHHHHHHhcc
Q psy16850 68 HPKVKSAVREALEKFGTGAGGTRNISGN-----SLFHEKLEEDVARLHQKE--AGLVF--TSCYVANDSTLFTLGK 134 (174)
Q Consensus 68 ~p~v~~a~~~al~~~G~gs~~Sr~~~G~-----~~~~~~LE~~lA~~~g~e--~al~f--~sGy~aN~~~i~aL~~ 134 (174)
.|+|++|+.+.+..|+ +.+.+..-.++ ..++++..+.|++|+|.+ .-++| +||..+.-.++..|..
T Consensus 11 p~~V~~a~~~~~~~~~-~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~ 85 (355)
T cd00611 11 PEEVLEQAQKELLDFN-GLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLG 85 (355)
T ss_pred CHHHHHHHHHHHhhcc-cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCC
Confidence 6788999988887776 44433332322 267899999999999962 33555 4478887777777753
No 236
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=86.65 E-value=8.8 Score=33.89 Aligned_cols=79 Identities=10% Similarity=-0.020 Sum_probs=45.9
Q ss_pred CCeeEEEeccCccc---CCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC-------CcEEEec
Q psy16850 50 SEKEVTVYCSNDYL---GMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK-------EAGLVFT 119 (174)
Q Consensus 50 ~g~~~inf~SndYL---GL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~-------e~al~f~ 119 (174)
.++.+|+|+--|+= .|...|.+++++.++++.-... -++...-..+|-+.||+|++. ++-|+++
T Consensus 30 ~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~~~------~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it 103 (409)
T PLN00143 30 DHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFN------SYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLT 103 (409)
T ss_pred CCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcCCC------CCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEe
Confidence 45678999977764 4677888889988887641111 011112244566667777632 1235555
Q ss_pred ch-hHHHHHHHHHhcc
Q psy16850 120 SC-YVANDSTLFTLGK 134 (174)
Q Consensus 120 sG-y~aN~~~i~aL~~ 134 (174)
+| -.+-..++.++++
T Consensus 104 ~G~~~al~~~~~~l~~ 119 (409)
T PLN00143 104 LGCKHAAEIIIKVLAR 119 (409)
T ss_pred cChHHHHHHHHHHHcC
Confidence 55 4455556666655
No 237
>PLN02409 serine--glyoxylate aminotransaminase
Probab=86.08 E-value=7.9 Score=34.14 Aligned_cols=62 Identities=16% Similarity=0.092 Sum_probs=41.8
Q ss_pred ccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc---EEEecchhHHHHHHHHHhcc
Q psy16850 69 PKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA---GLVFTSCYVANDSTLFTLGK 134 (174)
Q Consensus 69 p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~---al~f~sGy~aN~~~i~aL~~ 134 (174)
..+.+++.+++.++-.+.. ++ +...+.+++.+.+++++|.+. +++.++|..++..++..+.+
T Consensus 18 ~~~~~~V~~a~~~~~~~~~-~~---~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~~ 82 (401)
T PLN02409 18 VNIPERVLRAMNRPNEDHR-SP---AFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTLS 82 (401)
T ss_pred CCCCHHHHHHhcCCCCCCC-CH---HHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcCC
Confidence 3445666666544333321 22 235788999999999998753 67888888888888877765
No 238
>PRK06290 aspartate aminotransferase; Provisional
Probab=85.74 E-value=17 Score=32.21 Aligned_cols=77 Identities=9% Similarity=-0.044 Sum_probs=45.4
Q ss_pred CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----CCC-----cEEEecc
Q psy16850 50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----QKE-----AGLVFTS 120 (174)
Q Consensus 50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g~e-----~al~f~s 120 (174)
.++.+++|++|+ ..+...|.+++++.+++..-... -++. .-..+|-+.+|+|+ |.. ..|++++
T Consensus 42 ~~~~~i~L~~g~-p~~~~~~~~~~~l~~~~~~~~~~------~Y~~-~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~ 113 (410)
T PRK06290 42 PDMELIDMGVGE-PDEMADESVVEVLCEEAKKPENR------GYAD-NGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSI 113 (410)
T ss_pred CCCCeEEcCCCC-CCCCCCHHHHHHHHHHHhCCCCC------CCCC-CCcHHHHHHHHHHHHHHcCCCcCCCcceEEEcc
Confidence 356789999886 45556777777777655321110 0111 22456677777775 432 3688999
Q ss_pred hhHHHHHH-HHHhcc
Q psy16850 121 CYVANDST-LFTLGK 134 (174)
Q Consensus 121 Gy~aN~~~-i~aL~~ 134 (174)
|-..-+.+ +.++++
T Consensus 114 Gs~~al~~~~~~~~~ 128 (410)
T PRK06290 114 GSKPALAMLPSCFIN 128 (410)
T ss_pred CHHHHHHHHHHHhCC
Confidence 98766644 455544
No 239
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=85.67 E-value=11 Score=34.63 Aligned_cols=81 Identities=9% Similarity=-0.044 Sum_probs=52.1
Q ss_pred CCeeEEEecc-C-cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh------C-CCcEEEecc
Q psy16850 50 SEKEVTVYCS-N-DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH------Q-KEAGLVFTS 120 (174)
Q Consensus 50 ~g~~~inf~S-n-dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~------g-~e~al~f~s 120 (174)
.|+.+|+|+. | |-.|+...+++++++.+++... .+ ++...-..+|-+.||+++ + .++-|++++
T Consensus 144 ~g~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~~-~~-------Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~ 215 (517)
T PRK13355 144 AGTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTDT-EG-------YSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGN 215 (517)
T ss_pred cCCCeEEecCcCCCcCCCCCCHHHHHHHHHHhhcC-CC-------CCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeC
Confidence 5678899987 4 5668888889999998887431 11 222223667778888887 3 234477777
Q ss_pred hhHHHH-HHHHHhcccCCCCe
Q psy16850 121 CYVAND-STLFTLGKMIPYFT 140 (174)
Q Consensus 121 Gy~aN~-~~i~aL~~~~~g~~ 140 (174)
|-..-+ .++.+|++ +|+.
T Consensus 216 G~~eal~~~~~~l~~--~Gd~ 234 (517)
T PRK13355 216 GVSELINLSMSALLD--DGDE 234 (517)
T ss_pred cHHHHHHHHHHHhCC--CCCE
Confidence 766544 45566654 4443
No 240
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=85.46 E-value=18 Score=31.25 Aligned_cols=77 Identities=10% Similarity=-0.058 Sum_probs=44.6
Q ss_pred CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC----C----CcEEEecchh
Q psy16850 51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ----K----EAGLVFTSCY 122 (174)
Q Consensus 51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g----~----e~al~f~sGy 122 (174)
|+.+++|++|+ .++...|.+++++.++++... -..++...-+.+|.+.+|+|++ . +.-+++++|-
T Consensus 28 ~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~ 100 (383)
T TIGR03540 28 GVDVISLGIGD-PDLPTPKHIVEALCKAAENPE------NHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGS 100 (383)
T ss_pred CCCeEEeCCCC-CCCCCCHHHHHHHHHHHhCCC------CCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCc
Confidence 45678999987 356667778888887764211 0112222224667777777764 2 2246676665
Q ss_pred HHHH-HHHHHhcc
Q psy16850 123 VAND-STLFTLGK 134 (174)
Q Consensus 123 ~aN~-~~i~aL~~ 134 (174)
...+ .++.++++
T Consensus 101 ~~~l~~~~~~~~~ 113 (383)
T TIGR03540 101 KEGIAHIPLAFVN 113 (383)
T ss_pred HHHHHHHHHHhCC
Confidence 4443 44455554
No 241
>PLN02672 methionine S-methyltransferase
Probab=85.23 E-value=13 Score=37.92 Aligned_cols=77 Identities=8% Similarity=-0.005 Sum_probs=56.2
Q ss_pred CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc----EEEecchhHHH
Q psy16850 50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA----GLVFTSCYVAN 125 (174)
Q Consensus 50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~----al~f~sGy~aN 125 (174)
+|..+|+|..|+- .+...|.+++++.+++.+... ..|..++.+.|-+.+++.+|.+. -|+++.|-..-
T Consensus 695 ~g~~vI~LsinE~-d~ppPp~V~eAi~eal~~~~~-------s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~el 766 (1082)
T PLN02672 695 QESSLIHMDVDES-FLPVPSAVKASIFESFVRQNI-------SESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLAL 766 (1082)
T ss_pred CCCCEEEEeCCCC-CCCCCHHHHHHHHHHHhhcCC-------CCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHH
Confidence 4668899988763 566788999999888765432 23566788999999999988754 48888887655
Q ss_pred H-HHHHHhcc
Q psy16850 126 D-STLFTLGK 134 (174)
Q Consensus 126 ~-~~i~aL~~ 134 (174)
+ .++.++++
T Consensus 767 L~lll~aLl~ 776 (1082)
T PLN02672 767 FNKLVLCCVQ 776 (1082)
T ss_pred HHHHHHHHcC
Confidence 5 35566765
No 242
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=85.16 E-value=8.6 Score=33.09 Aligned_cols=74 Identities=11% Similarity=0.011 Sum_probs=41.3
Q ss_pred CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC----cEEEecchhHHHH
Q psy16850 51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE----AGLVFTSCYVAND 126 (174)
Q Consensus 51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e----~al~f~sGy~aN~ 126 (174)
++.+++|++++ -.+...|.+++++.++....+- ....|...+.+++.+.+++.+|.. +.|+.++|-...+
T Consensus 20 ~~~~i~l~~~~-p~~~~~~~~~~~~~~~~~~~~Y-----~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i 93 (357)
T TIGR03539 20 PDGIVDLSVGT-PVDPVPPLIRAALAAAADAPGY-----PQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELV 93 (357)
T ss_pred CCCeEEccCCC-CCCCCCHHHHHHHHHHHhhCCC-----CcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHH
Confidence 45578888875 2233456677776665432211 112344455555555555544533 5678888877766
Q ss_pred HHHH
Q psy16850 127 STLF 130 (174)
Q Consensus 127 ~~i~ 130 (174)
..+.
T Consensus 94 ~~~~ 97 (357)
T TIGR03539 94 AWLP 97 (357)
T ss_pred HHHH
Confidence 6553
No 243
>PRK05942 aspartate aminotransferase; Provisional
Probab=84.85 E-value=18 Score=31.59 Aligned_cols=77 Identities=5% Similarity=-0.146 Sum_probs=42.4
Q ss_pred CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----C----CCcEEEecchh
Q psy16850 51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----Q----KEAGLVFTSCY 122 (174)
Q Consensus 51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g----~e~al~f~sGy 122 (174)
|..+|+|++++ ..+...+++.+++.+.+... ...-++...-..+|.+++|+|+ | .+.-+++++|-
T Consensus 34 g~~~i~l~~g~-p~~~~p~~~~~~~~~~~~~~------~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~ 106 (394)
T PRK05942 34 GLDLIDLGMGN-PDGAAPQPVIEAAIAALADP------QNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGS 106 (394)
T ss_pred CCCeEEcCCCC-CCCCCCHHHHHHHHHHHhCC------CCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccCh
Confidence 45689998764 44444556777777665421 1122333333567888888887 3 23346656664
Q ss_pred HH-HHHHHHHhcc
Q psy16850 123 VA-NDSTLFTLGK 134 (174)
Q Consensus 123 ~a-N~~~i~aL~~ 134 (174)
.. -..++.++++
T Consensus 107 ~~al~~~~~~~~~ 119 (394)
T PRK05942 107 KEGLTHLALAYVN 119 (394)
T ss_pred HHHHHHHHHHhCC
Confidence 43 3344445554
No 244
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=84.68 E-value=4.5 Score=35.49 Aligned_cols=78 Identities=21% Similarity=0.179 Sum_probs=50.2
Q ss_pred CeeEEEeccCcc---cCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--------CcEEEec
Q psy16850 51 EKEVTVYCSNDY---LGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--------EAGLVFT 119 (174)
Q Consensus 51 g~~~inf~SndY---LGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--------e~al~f~ 119 (174)
|..+++|+.-+- -.+.-.+++++++.+.++.... ..++...-..+|.+.||++++. +..++.+
T Consensus 30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~------~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~ 103 (403)
T TIGR01265 30 EKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKF------NGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTS 103 (403)
T ss_pred CCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCC------CCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEec
Confidence 456777776653 2344567888888877643111 1123334467888999999984 4466666
Q ss_pred chhHHHHHHHHHhcc
Q psy16850 120 SCYVANDSTLFTLGK 134 (174)
Q Consensus 120 sGy~aN~~~i~aL~~ 134 (174)
+|-.+...++.++++
T Consensus 104 G~t~al~~~~~~l~~ 118 (403)
T TIGR01265 104 GCSQAIEICIEALAN 118 (403)
T ss_pred ChHHHHHHHHHHhCC
Confidence 667887788888864
No 245
>PRK14012 cysteine desulfurase; Provisional
Probab=84.42 E-value=5.7 Score=34.83 Aligned_cols=64 Identities=14% Similarity=0.184 Sum_probs=40.7
Q ss_pred CccchHHHHHHHH---HcCCCccccccc-cC--CchHHHHHHHHHHHHhCCCc--EEEecchhHHHHHHHHHhc
Q psy16850 68 HPKVKSAVREALE---KFGTGAGGTRNI-SG--NSLFHEKLEEDVARLHQKEA--GLVFTSCYVANDSTLFTLG 133 (174)
Q Consensus 68 ~p~v~~a~~~al~---~~G~gs~~Sr~~-~G--~~~~~~~LE~~lA~~~g~e~--al~f~sGy~aN~~~i~aL~ 133 (174)
.+.+++++.+.+. .++. .+++.. .+ .....+++|+.+|+++|.+. +++.++|..++..++.++.
T Consensus 16 ~~~v~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l~ 87 (404)
T PRK14012 16 DPRVAEKMMPYLTMDGTFGN--PASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATESDNLAIKGAA 87 (404)
T ss_pred CHHHHHHHHHHHHhcccCcC--CCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHHH
Confidence 5667777777664 3332 222111 11 13568899999999999854 6777777777766666654
No 246
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=84.09 E-value=16 Score=31.54 Aligned_cols=101 Identities=13% Similarity=0.035 Sum_probs=58.9
Q ss_pred CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC-cEEEecchhHHHHH-H
Q psy16850 51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-AGLVFTSCYVANDS-T 128 (174)
Q Consensus 51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-~al~f~sGy~aN~~-~ 128 (174)
+..+|+|+.|.-- +...|.+++++.+..+... .++...- .+|.+.||+++|.+ +.|++++|-.--+. +
T Consensus 35 ~~~~i~l~~~~~~-~~~~~~~~~al~~~~~~~~--------~Y~~~~g-~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~ 104 (371)
T PRK05166 35 VPRIAKLGSNENP-LGPSPAVRRAFADIAELLR--------LYPDPQG-RALREAIAARTGVPADRIILGNGSEDLIAVI 104 (371)
T ss_pred CcceEEcCCCCCC-CCCCHHHHHHHHHHHHHhh--------cCCCCcH-HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHH
Confidence 4578999987422 3456777777765433210 1222222 37999999999854 45888888765544 3
Q ss_pred HHHhcccCCCCeeE-----------------EEEEEecC-----CCHHHHHHHHHHh
Q psy16850 129 LFTLGKMIPYFTEL-----------------IYFYRFLA-----NTTDIIKEASKEL 163 (174)
Q Consensus 129 i~aL~~~~~g~~~s-----------------~~~~~f~H-----Nd~~~Le~~L~~~ 163 (174)
+.++.+ +|.... +.++.++- -|+++|++.+...
T Consensus 105 ~~~~~~--~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~ 159 (371)
T PRK05166 105 CRAVLR--PGDRVVTLYPSFPLHEDYPTMMGARVERVTVTPDLGFDLDALCAAVARA 159 (371)
T ss_pred HHHhcC--CCCEEEEcCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHhhhcC
Confidence 455544 343322 23333322 3688888877653
No 247
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=84.02 E-value=5.2 Score=35.09 Aligned_cols=65 Identities=23% Similarity=0.241 Sum_probs=39.9
Q ss_pred CccchHHHHHHHHHcCCCccccccc-cC--CchHHHHHHHHHHHHhCCC-cEEEecch-hHHHHHHHHHhc
Q psy16850 68 HPKVKSAVREALEKFGTGAGGTRNI-SG--NSLFHEKLEEDVARLHQKE-AGLVFTSC-YVANDSTLFTLG 133 (174)
Q Consensus 68 ~p~v~~a~~~al~~~G~gs~~Sr~~-~G--~~~~~~~LE~~lA~~~g~e-~al~f~sG-y~aN~~~i~aL~ 133 (174)
+|.+++++.+.++.+. +..+++.. .+ .....+++++.||+++|.+ +.++|++| -.++..++.++.
T Consensus 16 ~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~ 85 (402)
T TIGR02006 16 DPRVAEKMMPYLTEKF-GNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESNNLAIKGIA 85 (402)
T ss_pred CHHHHHHHHHHHHhcC-CCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHH
Confidence 7778888877775442 22222111 11 1357889999999999975 34555554 457666666653
No 248
>KOG0053|consensus
Probab=83.58 E-value=2.3 Score=38.58 Aligned_cols=68 Identities=21% Similarity=0.068 Sum_probs=49.5
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeEEE------------------EEEecCCCHHHHH
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTELIY------------------FYRFLANTTDIIK 157 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s~~------------------~~~f~HNd~~~Le 157 (174)
.+.-..||+.+|+..|.+.|++|+||..|-..++-.|.. .|++.-+. -..-.+=|+++++
T Consensus 76 nPt~~~le~~iaal~ga~~~l~fsSGmaA~~~al~~L~~--~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~~~~ 153 (409)
T KOG0053|consen 76 NPTRDVLESGIAALEGAAHALLFSSGMAAITVALLHLLP--AGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVDDLK 153 (409)
T ss_pred CCchHHHHHHHHHHhCCceEEEecccHHHHHHHHHHhcC--CCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechhhHH
Confidence 467889999999999999999999999888888888876 44444310 0122345777777
Q ss_pred HHHHHhcc
Q psy16850 158 EASKELQE 165 (174)
Q Consensus 158 ~~L~~~~~ 165 (174)
.+++...+
T Consensus 154 ~~~~~i~~ 161 (409)
T KOG0053|consen 154 KILKAIKE 161 (409)
T ss_pred HHHHhhcc
Confidence 77766665
No 249
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=83.39 E-value=12 Score=32.47 Aligned_cols=69 Identities=12% Similarity=0.031 Sum_probs=39.5
Q ss_pred cCCCCCccchHHHHHHHHHcCCCc--cccccccCCchHHHHHHHHHHHHhCCC--cEEEecch-hHHHHHHHHHh
Q psy16850 63 LGMSCHPKVKSAVREALEKFGTGA--GGTRNISGNSLFHEKLEEDVARLHQKE--AGLVFTSC-YVANDSTLFTL 132 (174)
Q Consensus 63 LGL~~~p~v~~a~~~al~~~G~gs--~~Sr~~~G~~~~~~~LE~~lA~~~g~e--~al~f~sG-y~aN~~~i~aL 132 (174)
.|+ ..+.+++++.+.++.+.... +....-.-.....+++.+.||+++|.+ +.++|++| ..+.-.++.++
T Consensus 25 ~~~-~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~~~~ 98 (398)
T TIGR03392 25 TAL-KPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSY 98 (398)
T ss_pred ccC-CCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHHHHh
Confidence 354 34678888888776543211 111110011246778889999999974 35655555 45555555565
No 250
>PRK09265 aminotransferase AlaT; Validated
Probab=83.14 E-value=19 Score=31.48 Aligned_cols=77 Identities=9% Similarity=-0.031 Sum_probs=47.3
Q ss_pred CCeeEEEecc-C-cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC-------CCcEEEecc
Q psy16850 50 SEKEVTVYCS-N-DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ-------KEAGLVFTS 120 (174)
Q Consensus 50 ~g~~~inf~S-n-dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g-------~e~al~f~s 120 (174)
.|+.+++|++ | +-.++...|++.+++.+.+... ..++...-..+|-+.+|+|++ .++-|++++
T Consensus 31 ~~~~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~~~--------~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~ 102 (404)
T PRK09265 31 EGHKILKLNIGNPAPFGFEAPDEILRDVIRNLPTA--------QGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGN 102 (404)
T ss_pred cCCCeEEecCCCCCcCCCCCCHHHHHHHHHHhhcC--------CCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeC
Confidence 4567888876 3 2336777788888887765321 112222224578888888872 233577888
Q ss_pred hhHHHH-HHHHHhcc
Q psy16850 121 CYVAND-STLFTLGK 134 (174)
Q Consensus 121 Gy~aN~-~~i~aL~~ 134 (174)
|-..-+ .++.++++
T Consensus 103 G~~~~l~~~~~~~~~ 117 (404)
T PRK09265 103 GVSELIVMAMQALLN 117 (404)
T ss_pred ChHHHHHHHHHHhCC
Confidence 876644 56666654
No 251
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=83.04 E-value=9 Score=32.96 Aligned_cols=76 Identities=16% Similarity=0.052 Sum_probs=42.7
Q ss_pred CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC----CcEEEecchhHHHH
Q psy16850 51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK----EAGLVFTSCYVAND 126 (174)
Q Consensus 51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~----e~al~f~sGy~aN~ 126 (174)
+..+++|++++ ......|.+++++.++.+.. +. ....|...+.+.+.+.+.+..|. ++-|++++|....+
T Consensus 26 ~~~~i~l~~~~-p~~~~~~~~~~~~~~~~~~~--~Y---~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i 99 (364)
T PRK07865 26 PDGIVDLSVGT-PVDPVPPVIQEALAAAADAP--GY---PTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELV 99 (364)
T ss_pred CCCEEEcCCCC-CCCCCCHHHHHHHHHHHhhC--CC---CCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHH
Confidence 34578999886 33344566777776554321 11 11134344444444444443342 45799999998888
Q ss_pred HHHHHh
Q psy16850 127 STLFTL 132 (174)
Q Consensus 127 ~~i~aL 132 (174)
.++..+
T Consensus 100 ~~~~~~ 105 (364)
T PRK07865 100 AWLPTL 105 (364)
T ss_pred HHHHHH
Confidence 776433
No 252
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=82.74 E-value=9.3 Score=32.18 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=28.2
Q ss_pred CchHHHHHHHHHH----HHhCCC----cEEEecchhHHHHHHHHHhc
Q psy16850 95 NSLFHEKLEEDVA----RLHQKE----AGLVFTSCYVANDSTLFTLG 133 (174)
Q Consensus 95 ~~~~~~~LE~~lA----~~~g~e----~al~f~sGy~aN~~~i~aL~ 133 (174)
......++|++++ +++|.+ .+++.++|-.+|..++.++.
T Consensus 32 ~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~ 78 (345)
T cd06450 32 ESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAAR 78 (345)
T ss_pred cCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHH
Confidence 3344566777765 455875 68899999999998888774
No 253
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=82.51 E-value=6.6 Score=34.29 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=48.3
Q ss_pred cchHHHHHHHHHcCCCccccccccCCc-----hHHHHHHHHHHHHhCCC---cEEEe-cchhHHHHHHHHHhcc
Q psy16850 70 KVKSAVREALEKFGTGAGGTRNISGNS-----LFHEKLEEDVARLHQKE---AGLVF-TSCYVANDSTLFTLGK 134 (174)
Q Consensus 70 ~v~~a~~~al~~~G~gs~~Sr~~~G~~-----~~~~~LE~~lA~~~g~e---~al~f-~sGy~aN~~~i~aL~~ 134 (174)
.|++++.+.+..|. +.+.+....++. .+++++.+.|+++++.+ .++++ +||..|.=+++..|..
T Consensus 6 ~v~~~~~~~~~~~~-~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~ 78 (349)
T TIGR01364 6 EVLEQAQKELLNFN-GTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLA 78 (349)
T ss_pred HHHHHHHHHHhCcc-CCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCC
Confidence 67888888888777 555555554442 56899999999999953 36666 5599999999988875
No 254
>PLN02187 rooty/superroot1
Probab=82.48 E-value=24 Score=32.00 Aligned_cols=78 Identities=15% Similarity=0.148 Sum_probs=46.6
Q ss_pred CeeEEEeccC--cccC-CCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC-------CcEEEecc
Q psy16850 51 EKEVTVYCSN--DYLG-MSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK-------EAGLVFTS 120 (174)
Q Consensus 51 g~~~inf~Sn--dYLG-L~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~-------e~al~f~s 120 (174)
++.+|+|+.= |+.. +...+++.+++.++++. |.+ .-++...-..+|.+.||+|++. ++-|++++
T Consensus 65 ~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~-~~~-----~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~ 138 (462)
T PLN02187 65 NKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRS-GKG-----NSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTA 138 (462)
T ss_pred CCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhC-CCC-----CCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeC
Confidence 5678888765 4444 44456778888877753 221 1122333367788889999842 23455555
Q ss_pred h-hHHHHHHHHHhcc
Q psy16850 121 C-YVANDSTLFTLGK 134 (174)
Q Consensus 121 G-y~aN~~~i~aL~~ 134 (174)
| -.+-..++.+|++
T Consensus 139 G~~~al~~~~~~l~~ 153 (462)
T PLN02187 139 GCNQGIEIVFESLAR 153 (462)
T ss_pred CHHHHHHHHHHHhcC
Confidence 5 5566666777765
No 255
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=82.30 E-value=24 Score=30.54 Aligned_cols=101 Identities=15% Similarity=0.076 Sum_probs=60.7
Q ss_pred eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC---------cEEEecchhH
Q psy16850 53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE---------AGLVFTSCYV 123 (174)
Q Consensus 53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e---------~al~f~sGy~ 123 (174)
.+++|++|+- .+...|.+++++.+++.. +.... + +. ..-+.+|.+.||+|++.. +-|+.++|-.
T Consensus 29 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~--~--Y~-~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~ 101 (374)
T PRK02610 29 QLDRLDTNEF-PYDLPPDLKQKLAWLYQQ-GIESN--R--YP-DGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSD 101 (374)
T ss_pred ceeEecCCCC-CCCCCHHHHHHHHHHHhh-ccccc--C--CC-CCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChH
Confidence 4888988864 677788999998887654 21000 0 11 112578889999999742 2377788876
Q ss_pred HHHH-HHHHhcccCCCC-eeE-----------------EEEEEec------CCCHHHHHHHHHH
Q psy16850 124 ANDS-TLFTLGKMIPYF-TEL-----------------IYFYRFL------ANTTDIIKEASKE 162 (174)
Q Consensus 124 aN~~-~i~aL~~~~~g~-~~s-----------------~~~~~f~------HNd~~~Le~~L~~ 162 (174)
.-+. ++.+++. +|. .+. ++++.++ .-|+++|++.+++
T Consensus 102 ~al~~~~~~~~~--~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~ 163 (374)
T PRK02610 102 ELIRSLLIATCL--GGEGSILVAEPTFSMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQ 163 (374)
T ss_pred HHHHHHHHHHcC--CCCCeEEEcCCChHHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHh
Confidence 6553 3444432 221 221 2344443 3468899988875
No 256
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=81.49 E-value=6.7 Score=33.64 Aligned_cols=38 Identities=8% Similarity=0.024 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHhCCCc----EEEecchhHHHHHHHHHhcc
Q psy16850 97 LFHEKLEEDVARLHQKEA----GLVFTSCYVANDSTLFTLGK 134 (174)
Q Consensus 97 ~~~~~LE~~lA~~~g~e~----al~f~sGy~aN~~~i~aL~~ 134 (174)
..++++++.|++++|.+. .+++++|..++..++.+|..
T Consensus 37 ~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~ 78 (368)
T PRK13479 37 ALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVP 78 (368)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccC
Confidence 689999999999999853 45778999999999999875
No 257
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=81.35 E-value=8.1 Score=32.85 Aligned_cols=75 Identities=13% Similarity=0.102 Sum_probs=46.6
Q ss_pred CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc-EEEecchh-HHHHHH
Q psy16850 51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA-GLVFTSCY-VANDST 128 (174)
Q Consensus 51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~-al~f~sGy-~aN~~~ 128 (174)
++.+|+|++|+- .+...|.+++++.+++... .. .+... -..+|.+.||++++.+. -|++++|- .+-..+
T Consensus 23 ~~~~i~l~~~~~-~~~~~~~~~~a~~~~~~~~-~~------~y~~~-~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~ 93 (353)
T PRK05387 23 LAKLIKLNTNEN-PYPPSPKVLEAIRAALGDD-LR------LYPDP-NADALRQAIAAYYGLDPEQVFVGNGSDEVLAHA 93 (353)
T ss_pred ccceeeccCCCC-CCCCCHHHHHHHHHHhhhh-hh------cCCCC-cHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHH
Confidence 356899998763 3555788888888876531 11 11111 23689999999998533 35555554 444555
Q ss_pred HHHhcc
Q psy16850 129 LFTLGK 134 (174)
Q Consensus 129 i~aL~~ 134 (174)
+.+++.
T Consensus 94 ~~~l~~ 99 (353)
T PRK05387 94 FLAFFN 99 (353)
T ss_pred HHHhcC
Confidence 666654
No 258
>PLN00175 aminotransferase family protein; Provisional
Probab=80.85 E-value=36 Score=30.13 Aligned_cols=75 Identities=19% Similarity=0.092 Sum_probs=45.7
Q ss_pred eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC----C----CcEEEecch-h
Q psy16850 52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ----K----EAGLVFTSC-Y 122 (174)
Q Consensus 52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g----~----e~al~f~sG-y 122 (174)
..+|||+..+ -++...|.+++++.++++. +. ..++...-..+|.+.||++++ . +..+++++| .
T Consensus 54 ~~~i~l~~G~-P~~~~~~~~~~~~~~~~~~-~~------~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~ 125 (413)
T PLN00175 54 HGAINLGQGF-PNFDGPDFVKEAAIQAIRD-GK------NQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCT 125 (413)
T ss_pred CCeEecCCCC-CCCCCCHHHHHHHHHHHhc-CC------CCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHH
Confidence 4578888764 4566677888888888764 21 112222235567777777663 2 224555554 6
Q ss_pred HHHHHHHHHhcc
Q psy16850 123 VANDSTLFTLGK 134 (174)
Q Consensus 123 ~aN~~~i~aL~~ 134 (174)
.+...++.++++
T Consensus 126 ~al~~~~~~l~~ 137 (413)
T PLN00175 126 EAIAATILGLIN 137 (413)
T ss_pred HHHHHHHHHhCC
Confidence 777677777765
No 259
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=80.79 E-value=4.8 Score=34.74 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=39.2
Q ss_pred CccchHHHHHHHHHcCCCcccccc-c-cCCchHHHHHHHHHHHHhCCCc--EEEecchhHHHHHHHHHh
Q psy16850 68 HPKVKSAVREALEKFGTGAGGTRN-I-SGNSLFHEKLEEDVARLHQKEA--GLVFTSCYVANDSTLFTL 132 (174)
Q Consensus 68 ~p~v~~a~~~al~~~G~gs~~Sr~-~-~G~~~~~~~LE~~lA~~~g~e~--al~f~sGy~aN~~~i~aL 132 (174)
.+.++++..+.+..+. |..++.- . .-.....+++++.+|+++|.+. .++.++|-.++..++.++
T Consensus 12 ~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~ 79 (379)
T TIGR03402 12 DPEVLEAMLPYFTEYF-GNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSA 79 (379)
T ss_pred CHHHHHHHHHHHHhcC-CCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHH
Confidence 4667777777665432 2211110 0 0014567888899999999763 555667778777777665
No 260
>PRK08912 hypothetical protein; Provisional
Probab=80.56 E-value=37 Score=29.37 Aligned_cols=74 Identities=18% Similarity=0.056 Sum_probs=42.1
Q ss_pred eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----C----CC-cEEEecchhH
Q psy16850 53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----Q----KE-AGLVFTSCYV 123 (174)
Q Consensus 53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g----~e-~al~f~sGy~ 123 (174)
..++|++++ ..+...|.+.+++.+++.. +.. -++...-..+|.+.+|+++ | .+ ..++.+++..
T Consensus 27 ~~i~l~~g~-p~~~~p~~~~~~~~~~~~~-~~~------~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~ 98 (387)
T PRK08912 27 GAINLGQGF-PDDPGPEDVRRAAADALLD-GSN------QYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATE 98 (387)
T ss_pred CeEEccCCC-CCCCCCHHHHHHHHHHHhc-CCC------CCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHH
Confidence 568888765 3344567788877776542 110 1111112356667777665 3 22 3455555567
Q ss_pred HHHHHHHHhcc
Q psy16850 124 ANDSTLFTLGK 134 (174)
Q Consensus 124 aN~~~i~aL~~ 134 (174)
+...++.++++
T Consensus 99 al~~~~~~~~~ 109 (387)
T PRK08912 99 ALAAALLALVE 109 (387)
T ss_pred HHHHHHHHhcC
Confidence 76677777765
No 261
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=80.55 E-value=6 Score=39.83 Aligned_cols=72 Identities=7% Similarity=0.008 Sum_probs=48.5
Q ss_pred cccCCchHHHHHHHHHHHHhCCCcEEEecchhH-----HHHHHHHHhcccCCCC----eeE-----------------EE
Q psy16850 91 NISGNSLFHEKLEEDVARLHQKEAGLVFTSCYV-----ANDSTLFTLGKMIPYF----TEL-----------------IY 144 (174)
Q Consensus 91 ~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~-----aN~~~i~aL~~~~~g~----~~s-----------------~~ 144 (174)
.+.|...+..++++.||+++|.+ .++|+.+-. |+..+|.++.+. +|. ... ++
T Consensus 562 ~~~g~~~~~~~~r~~la~i~g~~-~v~f~pnaga~ge~a~~~vi~~~~~~-~Gd~~r~~vli~~~aH~sn~a~a~~~G~~ 639 (993)
T PLN02414 562 QAQGYQEMFEDLGDLLCEITGFD-SFSLQPNAGAAGEYAGLMVIRAYHLS-RGDHHRNVCIIPVSAHGTNPASAAMCGMK 639 (993)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC-eEEEcCCCcHHHHHHHHHHHHHHHhc-cCCCCCCEEEeCCCcCccCHHHHHHCCCE
Confidence 34688899999999999999995 555544333 677777777542 132 111 24
Q ss_pred EEEecCC-----CHHHHHHHHHHhc
Q psy16850 145 FYRFLAN-----TTDIIKEASKELQ 164 (174)
Q Consensus 145 ~~~f~HN-----d~~~Le~~L~~~~ 164 (174)
++..+-+ |+++|++++.+..
T Consensus 640 vv~v~~d~~G~vDle~L~~~i~~~~ 664 (993)
T PLN02414 640 IVVVGTDAKGNINIEELRKAAEAHK 664 (993)
T ss_pred EEEeccCCCCCcCHHHHHHHHhccC
Confidence 5555543 8999999998543
No 262
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=80.55 E-value=8 Score=38.12 Aligned_cols=79 Identities=13% Similarity=-0.008 Sum_probs=59.4
Q ss_pred cCCe----eEEEeccC-cccCCC--CCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC---CCcEEEe
Q psy16850 49 DSEK----EVTVYCSN-DYLGMS--CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ---KEAGLVF 118 (174)
Q Consensus 49 ~~g~----~~inf~Sn-dYLGL~--~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g---~e~al~f 118 (174)
.+|+ ++|+++|. ...++. .||+|.+|+.+.+++++.-.. . .-.++.-.+|-++|++..+ .+.+.+.
T Consensus 358 ~~G~~~~~~ylD~~sg~w~~~lG~h~~p~I~~Ai~~Qa~rl~hv~~-~---~~~hepa~~LAe~L~~~~~~~~l~rVffs 433 (817)
T PLN02974 358 TNSTCSIVQQFDACASWWTQGPDPTLQPELARAVAYAAGRYGHVMF-P---ENVHEPALRAAELLLGGPGKGWASRVFFS 433 (817)
T ss_pred CCCCcccceEEEcchhHHHhCCCcCCCHHHHHHHHHHHhhCCcccc-C---ccCCHHHHHHHHHHHhccCCCCCCEEEEC
Confidence 4565 89998764 456666 499999999999999874321 1 1146788889999998775 2578899
Q ss_pred cchhHHHHHHHHH
Q psy16850 119 TSCYVANDSTLFT 131 (174)
Q Consensus 119 ~sGy~aN~~~i~a 131 (174)
+||-.||=..|..
T Consensus 434 ~sGSeAvE~AlKm 446 (817)
T PLN02974 434 DNGSTAIEVALKM 446 (817)
T ss_pred CchHHHHHHHHHH
Confidence 9999999887763
No 263
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=80.26 E-value=14 Score=31.63 Aligned_cols=72 Identities=13% Similarity=0.038 Sum_probs=46.9
Q ss_pred CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC-cEEEecchhHHHHHH
Q psy16850 50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-AGLVFTSCYVANDST 128 (174)
Q Consensus 50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-~al~f~sGy~aN~~~ 128 (174)
.+..+|+|++|. -.+...|.+++++.+++...+.+.- . ..-..+|.+.||+|+|.+ +-|++++|-..-+..
T Consensus 16 ~~~~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Y------~-~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~ 87 (337)
T PRK03967 16 EGNYRIWLDKNE-NPFDLPEELKEEIFEELKRVPFNRY------P-HITSDPLREAIAEFYGLDAENIAVGNGSDELISY 87 (337)
T ss_pred CCCceEEecCCC-CCCCCCHHHHHHHHHHhhcCccccC------C-CCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHH
Confidence 345678998876 2345668899999888765332211 1 112578999999999843 467788886654433
Q ss_pred H
Q psy16850 129 L 129 (174)
Q Consensus 129 i 129 (174)
+
T Consensus 88 ~ 88 (337)
T PRK03967 88 L 88 (337)
T ss_pred H
Confidence 3
No 264
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=79.89 E-value=9.7 Score=34.49 Aligned_cols=48 Identities=31% Similarity=0.247 Sum_probs=33.3
Q ss_pred cCCchH-HHHHHHHHHHHhCCCcEEE---ecchhHHHHHHHHHhcccCCCCeeE
Q psy16850 93 SGNSLF-HEKLEEDVARLHQKEAGLV---FTSCYVANDSTLFTLGKMIPYFTEL 142 (174)
Q Consensus 93 ~G~~~~-~~~LE~~lA~~~g~e~al~---f~sGy~aN~~~i~aL~~~~~g~~~s 142 (174)
+|+.+. -+.||+-.|+.||.|+||+ |-||.+|=..++.++.. ||+.+.
T Consensus 49 YGY~D~GRd~le~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~Lr--pGD~ll 100 (403)
T PF06838_consen 49 YGYDDIGRDKLERIYADVFGAEDALVRPQFVSGTHAIALALFGVLR--PGDELL 100 (403)
T ss_dssp T-TT-HHHHHHHHHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH----TT-EEE
T ss_pred CCCCCccHHHHHHHHHHHhCchhhhhcccccchHHHHHHHHHhcCC--CCCeEE
Confidence 445444 5679999999999999998 78999998888877754 565554
No 265
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=79.23 E-value=2.8 Score=38.33 Aligned_cols=38 Identities=18% Similarity=0.150 Sum_probs=32.6
Q ss_pred chHHHHHHHHHHHHhCCC---cEEEecchh-HHHHHHHHHhc
Q psy16850 96 SLFHEKLEEDVARLHQKE---AGLVFTSCY-VANDSTLFTLG 133 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e---~al~f~sGy-~aN~~~i~aL~ 133 (174)
..+-.++|+.+++++|.+ .|+++++|. +++..++.++-
T Consensus 104 ~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr 145 (444)
T TIGR03531 104 YKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALR 145 (444)
T ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcC
Confidence 478899999999999998 799999999 67777777764
No 266
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=78.52 E-value=8.2 Score=33.91 Aligned_cols=65 Identities=20% Similarity=0.205 Sum_probs=48.6
Q ss_pred ccchHHHHHHHHHcCCCccccccc-cC------CchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcc
Q psy16850 69 PKVKSAVREALEKFGTGAGGTRNI-SG------NSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGK 134 (174)
Q Consensus 69 p~v~~a~~~al~~~G~gs~~Sr~~-~G------~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~ 134 (174)
.-+-+++.+++-.||-|.+-.-.- .| ..+++.=+|. ||+|+|++.+-+..-.=.+-.+++.+|++
T Consensus 27 GiLt~eArkal~E~gDGYSvCD~C~~Grldei~kPpI~~F~~d-laeFlg~D~~R~t~GARe~KfavMhal~~ 98 (382)
T COG1103 27 GILTEEARKALLEWGDGYSVCDFCLEGRLDEITKPPIKDFLED-LAEFLGMDEVRVTAGAREAKFAVMHALCK 98 (382)
T ss_pred CcCCHHHHHHHHHhcCCcchhhhhccCccccccCCcHHHHHHH-HHHHhCCceeeecccchhhHHHHHHHhcc
Confidence 346788999999999876543322 12 2345555555 99999999888888778899999999997
No 267
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=78.28 E-value=16 Score=32.17 Aligned_cols=86 Identities=17% Similarity=0.169 Sum_probs=51.6
Q ss_pred CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----C---CCcEEEecchhH
Q psy16850 51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----Q---KEAGLVFTSCYV 123 (174)
Q Consensus 51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g---~e~al~f~sGy~ 123 (174)
+..+++|+.|+ ..+...|.+.+++.++++..+... .-.-++...-..+|-+.||+|+ | .++-|+.++|-.
T Consensus 33 ~~~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~ 109 (409)
T PRK07590 33 EAKIIRLGIGD-VTQPLPPAVIEAMHKAVDEMGTAE--TFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAK 109 (409)
T ss_pred CCceEEecCcC-CCCCCCHHHHHHHHHHHhcccccC--CccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHH
Confidence 34578888885 445567888899888887643210 0011112223456777888875 2 234588888877
Q ss_pred HHHHHHHHhcccCCCCee
Q psy16850 124 ANDSTLFTLGKMIPYFTE 141 (174)
Q Consensus 124 aN~~~i~aL~~~~~g~~~ 141 (174)
.-+.++..+.. +|..+
T Consensus 110 ~al~~l~~~~~--~gd~V 125 (409)
T PRK07590 110 CDTGNILDIFG--PDNTI 125 (409)
T ss_pred HHHHHHHHhcC--CCCEE
Confidence 66666666654 45443
No 268
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=78.28 E-value=42 Score=29.93 Aligned_cols=104 Identities=19% Similarity=0.048 Sum_probs=66.6
Q ss_pred eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC----CCc-EEEecchhHHHHH
Q psy16850 53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ----KEA-GLVFTSCYVANDS 127 (174)
Q Consensus 53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g----~e~-al~f~sGy~aN~~ 127 (174)
.+|||+.-+= .+...+.+++++.+++..-+. ..+ -..|...+.+.+-+.+.+..| .+. .++++-+-.|...
T Consensus 29 ~vi~l~iG~P-d~~~p~~i~~a~~~a~~~~~~--~Y~-~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~ 104 (393)
T COG0436 29 DVIDLSIGEP-DFPTPEHIIEAAIEALEEGGT--HYT-PSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFL 104 (393)
T ss_pred CEEEeCCCCC-CCCCCHHHHHHHHHHHhcccC--CCC-CCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHH
Confidence 4666665432 566677799999998876443 222 445666666666666666655 223 6777777888888
Q ss_pred HHHHhcccCCCCeeE-----------------EEEEEec--------CCCHHHHHHHHHH
Q psy16850 128 TLFTLGKMIPYFTEL-----------------IYFYRFL--------ANTTDIIKEASKE 162 (174)
Q Consensus 128 ~i~aL~~~~~g~~~s-----------------~~~~~f~--------HNd~~~Le~~L~~ 162 (174)
++.+|.. ||+.+. +..+..+ .-|.++|++.+..
T Consensus 105 ~~~a~~~--pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ 162 (393)
T COG0436 105 AFLALLN--PGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITP 162 (393)
T ss_pred HHHHhcC--CCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCc
Confidence 8888876 555433 1222222 3468888888877
No 269
>PLN02651 cysteine desulfurase
Probab=77.49 E-value=11 Score=32.57 Aligned_cols=65 Identities=23% Similarity=0.204 Sum_probs=37.4
Q ss_pred CccchHHHHHHHHH-cCCCcc-ccccccCCchHHHHHHHHHHHHhCCC-cEEEecc-hhHHHHHHHHHh
Q psy16850 68 HPKVKSAVREALEK-FGTGAG-GTRNISGNSLFHEKLEEDVARLHQKE-AGLVFTS-CYVANDSTLFTL 132 (174)
Q Consensus 68 ~p~v~~a~~~al~~-~G~gs~-~Sr~~~G~~~~~~~LE~~lA~~~g~e-~al~f~s-Gy~aN~~~i~aL 132 (174)
.+++++++.+.+.. ++.... +...-.......+++.+.||+++|.+ +.++|++ |-.++..++.++
T Consensus 12 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~ 80 (364)
T PLN02651 12 DPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGV 80 (364)
T ss_pred CHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHH
Confidence 56677777776654 443221 11100112467889999999999975 4566655 445544444443
No 270
>PRK08175 aminotransferase; Validated
Probab=77.31 E-value=25 Score=30.69 Aligned_cols=103 Identities=11% Similarity=0.023 Sum_probs=55.0
Q ss_pred eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC----C---Cc-EEEecchhH
Q psy16850 52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ----K---EA-GLVFTSCYV 123 (174)
Q Consensus 52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g----~---e~-al~f~sGy~ 123 (174)
..+++|++++ ......|.+.+++.+.+.. + ...-++...-..+|.+.+|+|++ . ++ -+++++|-.
T Consensus 29 ~~~i~l~~g~-p~~~~~~~~~~~~~~~~~~-~-----~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~ 101 (395)
T PRK08175 29 EDIIDFSMGN-PDGPTPPHIVEKLCEVAQR-P-----DTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSK 101 (395)
T ss_pred CCeEEcCCCC-CCCCCCHHHHHHHHHHHhC-C-----CcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcH
Confidence 4578887764 3333345566666665532 1 01112222225677777888763 2 23 577888886
Q ss_pred HHHH-HHHHhcccCCCCeeE-----------------EEEEEec----CCCHHHHHHHHHHh
Q psy16850 124 ANDS-TLFTLGKMIPYFTEL-----------------IYFYRFL----ANTTDIIKEASKEL 163 (174)
Q Consensus 124 aN~~-~i~aL~~~~~g~~~s-----------------~~~~~f~----HNd~~~Le~~L~~~ 163 (174)
..+. ++.++++ +|++.. +.++.++ +.+.++|++.++..
T Consensus 102 ~~l~~~~~~~~~--~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~ 161 (395)
T PRK08175 102 EGLAHLMLATLD--HGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNELERAIRES 161 (395)
T ss_pred HHHHHHHHHhCC--CCCEEEEcCCCCcchHHHHHHcCCeEEEEecccCCCcHHHHHHHHhhc
Confidence 6553 4445554 333221 2333332 23588899888754
No 271
>PLN02452 phosphoserine transaminase
Probab=76.99 E-value=14 Score=32.73 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=48.7
Q ss_pred CccchHHHHHHHHHcCCCccccccccCC-----chHHHHHHHHHHHHhCCCc---EEEe-cchhHHHHHHHHHhcc
Q psy16850 68 HPKVKSAVREALEKFGTGAGGTRNISGN-----SLFHEKLEEDVARLHQKEA---GLVF-TSCYVANDSTLFTLGK 134 (174)
Q Consensus 68 ~p~v~~a~~~al~~~G~gs~~Sr~~~G~-----~~~~~~LE~~lA~~~g~e~---al~f-~sGy~aN~~~i~aL~~ 134 (174)
.++|++++.+.+-.|. |++.|.+..++ ..++.+.++.|.++++.++ ++++ +||..+.-+++..|..
T Consensus 19 p~~Vl~~~~~~~~~~~-~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl~~ 93 (365)
T PLN02452 19 PANVLAKAQAELYNWE-GSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNLCK 93 (365)
T ss_pred CHHHHHHHHHHHhccc-ccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhcCC
Confidence 6788888887766654 34455554433 2678999999999999753 5555 8889998888888875
No 272
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=76.86 E-value=14 Score=34.46 Aligned_cols=74 Identities=22% Similarity=0.227 Sum_probs=53.3
Q ss_pred EeccCcccCCCCCccchHHHHHHH-HHcCCCccccccccCCchHHHHHHH----HHHHHhCCCcE-EEecchhHHHHHHH
Q psy16850 56 VYCSNDYLGMSCHPKVKSAVREAL-EKFGTGAGGTRNISGNSLFHEKLEE----DVARLHQKEAG-LVFTSCYVANDSTL 129 (174)
Q Consensus 56 nf~SndYLGL~~~p~v~~a~~~al-~~~G~gs~~Sr~~~G~~~~~~~LE~----~lA~~~g~e~a-l~f~sGy~aN~~~i 129 (174)
-.+|-||+ +|.++++.-..+ .+|--|..|.|...|. ....++|. ...++||.+-| +=.-||-.||++++
T Consensus 54 LiasEN~~----s~~v~~a~~s~l~nkyaeg~pg~ryy~g~-~~~d~ie~l~~~ra~~lf~a~~anvqp~Sg~~An~~v~ 128 (493)
T PRK13580 54 LIASENYS----SLAVQLAMGNLLTDKYAEGTPGHRFYAGC-QNVDTVEWEAAEHAKELFGAEHAYVQPHSGADANLVAF 128 (493)
T ss_pred EecccccC----CHHHHHHhcccccccCcCCCCCccccCCC-chHHHHHHHHHHHHHHHhCCCcccccCCCcHHHHHHHH
Confidence 34577775 455666655543 5688899999987765 56666664 45577888876 44579999999999
Q ss_pred HHhcc
Q psy16850 130 FTLGK 134 (174)
Q Consensus 130 ~aL~~ 134 (174)
.+|.+
T Consensus 129 ~all~ 133 (493)
T PRK13580 129 WAILA 133 (493)
T ss_pred HHHhc
Confidence 99985
No 273
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=76.44 E-value=10 Score=32.63 Aligned_cols=65 Identities=18% Similarity=0.154 Sum_probs=41.5
Q ss_pred CccchHHHHHHHHHc-CCCcccccccc-CCchHHHHHHHHHHHHhCCCc---EEEecchhHHHHHHHHHh
Q psy16850 68 HPKVKSAVREALEKF-GTGAGGTRNIS-GNSLFHEKLEEDVARLHQKEA---GLVFTSCYVANDSTLFTL 132 (174)
Q Consensus 68 ~p~v~~a~~~al~~~-G~gs~~Sr~~~-G~~~~~~~LE~~lA~~~g~e~---al~f~sGy~aN~~~i~aL 132 (174)
.+.|.+++.+.++.+ +.+..+..... -.....++.++.||+++|.+. .++.+++-.++-.++.++
T Consensus 12 p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l 81 (371)
T PF00266_consen 12 PKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSL 81 (371)
T ss_dssp BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhcc
Confidence 445677777776654 33312222111 135788899999999999988 444555555777777777
No 274
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=76.03 E-value=49 Score=28.41 Aligned_cols=105 Identities=16% Similarity=0.061 Sum_probs=59.0
Q ss_pred eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----C---CCcEEEecchhHH-
Q psy16850 53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----Q---KEAGLVFTSCYVA- 124 (174)
Q Consensus 53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g---~e~al~f~sGy~a- 124 (174)
..|+|+.|+- .+...|.+++++.++++.-..+. ..+... -+.+|.+.||+|+ | .++-|++++|-.-
T Consensus 27 ~~i~l~~~~~-~~~~~~~~~~al~~~l~~~~~~~----~~Y~~~-g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~ 100 (368)
T PRK03317 27 VPVRLNTNEN-PYPPSPALVADIAEAVAEAAAGL----NRYPDR-DAVALRADLAAYLTAQTGVGLTVENVWAANGSNEI 100 (368)
T ss_pred ceeEecCCCC-CCCCCHHHHHHHHHHHhhhhhhh----ccCCCC-chHHHHHHHHHHhhhhccCCCChhhEEECCCHHHH
Confidence 3577877753 35667888999888775421110 111121 2577889999998 3 2234777777544
Q ss_pred HHHHHHHhcccCCCCeeE-----------------EEEEEec-----CCCHHHHHHHHHHhcc
Q psy16850 125 NDSTLFTLGKMIPYFTEL-----------------IYFYRFL-----ANTTDIIKEASKELQE 165 (174)
Q Consensus 125 N~~~i~aL~~~~~g~~~s-----------------~~~~~f~-----HNd~~~Le~~L~~~~~ 165 (174)
-..++.+++. +|.... +.++.++ .-|+++|++.+++...
T Consensus 101 l~~~~~~~~~--~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 161 (368)
T PRK03317 101 LQQLLQAFGG--PGRTALGFVPSYSMHPIIARGTHTEWVEGPRAADFTLDVDAAVAAIAEHRP 161 (368)
T ss_pred HHHHHHHhcC--CCCEEEEeCCChHHHHHHHHhcCCeeEEcccCCCCCCCHHHHHHHHhccCC
Confidence 3444555554 343322 1222221 2378889888875443
No 275
>PRK07568 aspartate aminotransferase; Provisional
Probab=75.43 E-value=15 Score=31.83 Aligned_cols=74 Identities=12% Similarity=-0.020 Sum_probs=40.4
Q ss_pred eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC-------CCcEEEecchhHH
Q psy16850 52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ-------KEAGLVFTSCYVA 124 (174)
Q Consensus 52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g-------~e~al~f~sGy~a 124 (174)
..+++|.+++ ..+...+.+++++.+.... ..-++...-..+|.+.+|++++ .+..++.++|-.+
T Consensus 30 ~~~i~l~~~~-~~~~~~~~~~~a~~~~~~~--------~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~a 100 (397)
T PRK07568 30 IKVYHLNIGQ-PDIKTPEVFFEAIKNYDEE--------VLAYSHSQGIPELREAFAKYYKKWGIDVEPDEILITNGGSEA 100 (397)
T ss_pred CCEEEecCCC-CCCCCCHHHHHHHHHHhcC--------CcCcCCCCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHH
Confidence 4477887765 2333345555555443221 0112223335778888888873 3445555556666
Q ss_pred HHHHHHHhcc
Q psy16850 125 NDSTLFTLGK 134 (174)
Q Consensus 125 N~~~i~aL~~ 134 (174)
...++.++..
T Consensus 101 l~~~~~~l~~ 110 (397)
T PRK07568 101 ILFAMMAICD 110 (397)
T ss_pred HHHHHHHhcC
Confidence 6666667654
No 276
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=75.17 E-value=16 Score=32.24 Aligned_cols=78 Identities=19% Similarity=0.085 Sum_probs=47.4
Q ss_pred CCeeEEEeccCcccC----CCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC-------------
Q psy16850 50 SEKEVTVYCSNDYLG----MSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK------------- 112 (174)
Q Consensus 50 ~g~~~inf~SndYLG----L~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~------------- 112 (174)
++..+|+|+..+ .. |-..+.+++++.++++. + .-.-++...-..+|.+.||+|++.
T Consensus 31 ~~~~~i~l~~g~-p~~~~~~~p~~~~~~a~~~~~~~-~-----~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~ 103 (412)
T PTZ00433 31 SPKSIIKLSVGD-PTLDGNLLTPAIQTKALVEAVDS-Q-----ECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIK 103 (412)
T ss_pred CCCCeeecCCcC-CCCcCCCCCCHHHHHHHHHHhhc-C-----CCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCC
Confidence 567789998764 22 34567788887777653 1 011122222367788889988863
Q ss_pred CcEEEecch-hHHHHHHHHHhcc
Q psy16850 113 EAGLVFTSC-YVANDSTLFTLGK 134 (174)
Q Consensus 113 e~al~f~sG-y~aN~~~i~aL~~ 134 (174)
++-|++++| -.+...++.++.+
T Consensus 104 ~~~i~it~G~~~al~~~~~~~~~ 126 (412)
T PTZ00433 104 KDNVVLCSGVSHAILMALTALCD 126 (412)
T ss_pred hhhEEEeCChHHHHHHHHHHhcC
Confidence 233555555 6677777777765
No 277
>PRK09105 putative aminotransferase; Provisional
Probab=74.46 E-value=21 Score=31.15 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=46.1
Q ss_pred eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc-EEEecch-hHHHHHHH
Q psy16850 52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA-GLVFTSC-YVANDSTL 129 (174)
Q Consensus 52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~-al~f~sG-y~aN~~~i 129 (174)
+.+++|+.|. -++.-.|.+++++.+++...+ .++... ..+|-+.||+++|.+. -|+++.| -.+-..++
T Consensus 43 ~~~i~l~~~~-~~~~~~~~~~~a~~~~~~~~~--------~Y~~~~-~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~ 112 (370)
T PRK09105 43 EGAVFLNANE-CPLGPSPAARDAAARSAALSG--------RYDLEL-EDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAV 112 (370)
T ss_pred CCcEEecCCC-CCCCCCHHHHHHHHHHHHHhc--------CCCCch-HHHHHHHHHHHhCcChhhEEEcCChHHHHHHHH
Confidence 3467777765 345678889999888765421 133333 7789899999997432 2445444 55555666
Q ss_pred HHhcc
Q psy16850 130 FTLGK 134 (174)
Q Consensus 130 ~aL~~ 134 (174)
.++.+
T Consensus 113 ~~l~~ 117 (370)
T PRK09105 113 LAFTS 117 (370)
T ss_pred HHHcC
Confidence 66654
No 278
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=73.96 E-value=12 Score=32.70 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=46.5
Q ss_pred CccchHHHHHHHHHcCCCccccccccCC-----chHHHHHHHHHHHHhCC-C--cEEEe-cchhHHHHHHHHHhcc
Q psy16850 68 HPKVKSAVREALEKFGTGAGGTRNISGN-----SLFHEKLEEDVARLHQK-E--AGLVF-TSCYVANDSTLFTLGK 134 (174)
Q Consensus 68 ~p~v~~a~~~al~~~G~gs~~Sr~~~G~-----~~~~~~LE~~lA~~~g~-e--~al~f-~sGy~aN~~~i~aL~~ 134 (174)
.++|++|+.+.+..|+ ..+-+....++ ..+++++.+.|+++++. + .++++ +||..++=+++..|+.
T Consensus 15 p~~V~~a~~~~~~~~~-~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~~ 89 (360)
T PRK05355 15 PEEVLEQAQQELLDWN-GSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLG 89 (360)
T ss_pred CHHHHHHHHHHhhccc-cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcCC
Confidence 6788888888776665 33333332222 26799999999999995 2 24444 8999999999888875
No 279
>PRK09148 aminotransferase; Validated
Probab=72.83 E-value=20 Score=31.48 Aligned_cols=78 Identities=8% Similarity=-0.062 Sum_probs=43.7
Q ss_pred CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----CC---Cc-EEEecch
Q psy16850 50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----QK---EA-GLVFTSC 121 (174)
Q Consensus 50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g~---e~-al~f~sG 121 (174)
.|+.+|+|++|+ -.+...+.+++++.++++. . ...-++...-+.+|.+.+|+|+ |. ++ -|++++|
T Consensus 28 ~~~~~i~l~~~~-p~~~~~~~~~~~~~~~~~~---~---~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G 100 (405)
T PRK09148 28 AGADIIDLGMGN-PDLPTPQHIVDKLCETAQD---P---RTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLG 100 (405)
T ss_pred cCCCeEEcCCCC-CCCCCCHHHHHHHHHHHcC---c---ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCC
Confidence 345688998874 3444467777777766532 0 1111222223567778888877 42 23 4666666
Q ss_pred hH-HHHHHHHHhcc
Q psy16850 122 YV-ANDSTLFTLGK 134 (174)
Q Consensus 122 y~-aN~~~i~aL~~ 134 (174)
-. +-..++.+|++
T Consensus 101 ~~~al~~~~~~l~~ 114 (405)
T PRK09148 101 SKEGFANMAQAITA 114 (405)
T ss_pred hHHHHHHHHHHhcC
Confidence 44 44455566654
No 280
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=72.59 E-value=5.4 Score=35.99 Aligned_cols=63 Identities=22% Similarity=0.277 Sum_probs=42.2
Q ss_pred CccchHHHHHHHHHcCCCccccccccCC--chHHHHHHHHHHHHhCCCc-EEEecc-hhHHHHHHHHH
Q psy16850 68 HPKVKSAVREALEKFGTGAGGTRNISGN--SLFHEKLEEDVARLHQKEA-GLVFTS-CYVANDSTLFT 131 (174)
Q Consensus 68 ~p~v~~a~~~al~~~G~gs~~Sr~~~G~--~~~~~~LE~~lA~~~g~e~-al~f~s-Gy~aN~~~i~a 131 (174)
+|++++++...+..+ .|--+|-.-.|. ..+.++-.+.+|+.+|.+. -|+|+| |+.+|-.+|..
T Consensus 14 ~~~v~~~m~~~~~~~-fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g 80 (386)
T COG1104 14 DPEVLEAMLPYLTEV-FGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKG 80 (386)
T ss_pred CHHHHHHHHHHHHhh-cCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHh
Confidence 788888888887665 223333233353 5677888899999999765 455555 57777655554
No 281
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=71.07 E-value=50 Score=32.27 Aligned_cols=40 Identities=20% Similarity=0.115 Sum_probs=36.2
Q ss_pred CchHHHHHHHHHHHHhCCCcEEEecch-hHHHHHHHHHhcc
Q psy16850 95 NSLFHEKLEEDVARLHQKEAGLVFTSC-YVANDSTLFTLGK 134 (174)
Q Consensus 95 ~~~~~~~LE~~lA~~~g~e~al~f~sG-y~aN~~~i~aL~~ 134 (174)
...+..+.|+..|+.||.+.+.+...| ..+|.+++.+++.
T Consensus 193 ~~G~i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~~~ 233 (713)
T PRK15399 193 HTGPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAP 233 (713)
T ss_pred CChHHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhcC
Confidence 567899999999999999999999888 6789999999886
No 282
>PRK07908 hypothetical protein; Provisional
Probab=70.42 E-value=17 Score=30.96 Aligned_cols=72 Identities=8% Similarity=0.007 Sum_probs=47.7
Q ss_pred CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC-cEEEecchhHHHHHHH
Q psy16850 51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-AGLVFTSCYVANDSTL 129 (174)
Q Consensus 51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-~al~f~sGy~aN~~~i 129 (174)
+..+++|+.|. -.+...+.+++++.+++.... + ++...-..+|.+.+|+++|.+ +-|++++|-.--+.++
T Consensus 21 ~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~-~-------Y~~~~g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~ 91 (349)
T PRK07908 21 GPGLLDFAVNV-RHDTPPEWLRERLAARLGDLA-A-------YPSTEDERRARAAVAARHGRTPDEVLLLAGAAEGFALL 91 (349)
T ss_pred CCCeEEecCCC-CCCCCCHHHHHHHHHHhhHhh-c-------CCCccchHHHHHHHHHHhCcChhhEEECCCHHHHHHHH
Confidence 56799999875 345557778888887764421 1 122233678899999999844 3688888877655554
Q ss_pred HH
Q psy16850 130 FT 131 (174)
Q Consensus 130 ~a 131 (174)
..
T Consensus 92 ~~ 93 (349)
T PRK07908 92 AR 93 (349)
T ss_pred Hh
Confidence 44
No 283
>PRK12566 glycine dehydrogenase; Provisional
Probab=70.38 E-value=5.8 Score=39.77 Aligned_cols=73 Identities=12% Similarity=0.034 Sum_probs=54.0
Q ss_pred ccCCchHHHHHHHHHHHHhCCCcEEEec-chhHHHHHHHHHhcc--------c-----C-CCCe---eE------EEEEE
Q psy16850 92 ISGNSLFHEKLEEDVARLHQKEAGLVFT-SCYVANDSTLFTLGK--------M-----I-PYFT---EL------IYFYR 147 (174)
Q Consensus 92 ~~G~~~~~~~LE~~lA~~~g~e~al~f~-sGy~aN~~~i~aL~~--------~-----~-~g~~---~s------~~~~~ 147 (174)
..|+..+..+||+.||+.+|++.+-+++ ||-++|++++-++.. . + ...| .. ++++.
T Consensus 538 sQG~lq~i~elq~~l~eLtGmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpasa~~~GieVv~ 617 (954)
T PRK12566 538 AEGYRAMIDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPASAQMAGMRVVI 617 (954)
T ss_pred hcCHHHHHHHHHHHHHHHHCCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHHHHHCCCEEEE
Confidence 4688899999999999999999999988 999999888877652 0 1 1112 10 35555
Q ss_pred ecC-----CCHHHHHHHHHHhc
Q psy16850 148 FLA-----NTTDIIKEASKELQ 164 (174)
Q Consensus 148 f~H-----Nd~~~Le~~L~~~~ 164 (174)
.+. -|+++|++++.+..
T Consensus 618 Vp~D~~G~iDle~L~a~I~~~~ 639 (954)
T PRK12566 618 VECDPDGNVDLDDLKAKAAAAG 639 (954)
T ss_pred eccCCCCCcCHHHHHHHhhccC
Confidence 555 38999999987443
No 284
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=69.99 E-value=27 Score=30.87 Aligned_cols=99 Identities=10% Similarity=-0.002 Sum_probs=53.1
Q ss_pred eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC----CcEEEecchhHHHH-H
Q psy16850 53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK----EAGLVFTSCYVAND-S 127 (174)
Q Consensus 53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~----e~al~f~sGy~aN~-~ 127 (174)
..++|++++ ......|.+.+++.+++.. ...+|...-..+|-+.+|+|++. ++-|+.++|-..-+ .
T Consensus 86 ~~i~L~~g~-p~~~~~p~~~~~~~~~~~~--------~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~ 156 (431)
T PRK15481 86 PLHDLAGGN-PDPQRLPDLSRYFARLSRT--------PRLYGDAPVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIER 156 (431)
T ss_pred hhhhhhcCC-CChhHhHHHHHHHHHhhhh--------hhhcCCcCCCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHH
Confidence 456776662 3333345555555544321 11244444456677888988762 33566666655444 4
Q ss_pred HHHHhcccCCCCeeE-----------------EEEEEec----CCCHHHHHHHHHH
Q psy16850 128 TLFTLGKMIPYFTEL-----------------IYFYRFL----ANTTDIIKEASKE 162 (174)
Q Consensus 128 ~i~aL~~~~~g~~~s-----------------~~~~~f~----HNd~~~Le~~L~~ 162 (174)
++.+++. ||.... ++++.++ .-|++.||+.++.
T Consensus 157 ~~~~l~~--pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g~~~~~l~~~~~~ 210 (431)
T PRK15481 157 LLCAHLL--PGDSVAVEDPCFLSSINMLRYAGFSASPVSVDAEGMQPEKLERALAQ 210 (431)
T ss_pred HHHHhCC--CCCEEEEeCCCcHHHHHHHHHcCCeEEeeccCCCCCCHHHHHHHHhc
Confidence 5666665 444322 1333321 3568888888865
No 285
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=68.77 E-value=10 Score=32.96 Aligned_cols=65 Identities=20% Similarity=0.176 Sum_probs=36.7
Q ss_pred CccchHHHHHHHHH-cCCCccccccccC-CchHHHHHHHHHHHHhCCC--cEEEecchhHHHH-HHHHHh
Q psy16850 68 HPKVKSAVREALEK-FGTGAGGTRNISG-NSLFHEKLEEDVARLHQKE--AGLVFTSCYVAND-STLFTL 132 (174)
Q Consensus 68 ~p~v~~a~~~al~~-~G~gs~~Sr~~~G-~~~~~~~LE~~lA~~~g~e--~al~f~sGy~aN~-~~i~aL 132 (174)
.+.+.++..+.++. ++...+++.-... .....+++.+.||+++|.+ +.++|++|....+ .++.++
T Consensus 31 p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~ 100 (403)
T TIGR01979 31 PQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSW 100 (403)
T ss_pred CHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHh
Confidence 45577777776654 3322222211110 1246778889999999976 4566666665543 334443
No 286
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=68.34 E-value=19 Score=31.80 Aligned_cols=61 Identities=18% Similarity=0.197 Sum_probs=38.4
Q ss_pred CccchHHHHHHHHHcCCCcc-ccccccC-CchHHHHHHHHHHHHhCCC--cEEEecchhHHHHHH
Q psy16850 68 HPKVKSAVREALEKFGTGAG-GTRNISG-NSLFHEKLEEDVARLHQKE--AGLVFTSCYVANDST 128 (174)
Q Consensus 68 ~p~v~~a~~~al~~~G~gs~-~Sr~~~G-~~~~~~~LE~~lA~~~g~e--~al~f~sGy~aN~~~ 128 (174)
.+.++++..+.+..+..+.. ++..... ....++++.+.||+|+|.+ +.++|++|-...+..
T Consensus 45 p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~ 109 (424)
T PLN02855 45 PAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEAINL 109 (424)
T ss_pred CHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHH
Confidence 45688888888877654322 2222111 1345788889999999984 467777776555443
No 287
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=67.95 E-value=48 Score=28.32 Aligned_cols=75 Identities=15% Similarity=0.074 Sum_probs=46.2
Q ss_pred CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC-cEEEecchhHHHH-H
Q psy16850 50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-AGLVFTSCYVAND-S 127 (174)
Q Consensus 50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-~al~f~sGy~aN~-~ 127 (174)
.+.++|+|++|+-- +.-.|++++++.++++.. .+ ++. .-..+|-+.||++++.+ +-|++++|-.--+ .
T Consensus 28 ~~~~~i~l~~~~~~-~~~~~~~~~~~~~~~~~~-~~-------Y~~-~~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~ 97 (357)
T PRK14809 28 DPDDLVKLSSNENP-HGPSPAAVEAIREAAERV-HS-------YPK-ASHADLTAALADRWDVSPEQVWLANGGDGALDY 97 (357)
T ss_pred CccceeEecCCCCC-CCCCHHHHHHHHHHHhhh-hc-------CCC-CCHHHHHHHHHHHhCCCcceEEECCCHHHHHHH
Confidence 34578999987332 444678888887766431 11 111 12568889999999843 3577777765444 4
Q ss_pred HHHHhcc
Q psy16850 128 TLFTLGK 134 (174)
Q Consensus 128 ~i~aL~~ 134 (174)
++.++++
T Consensus 98 ~~~~~~~ 104 (357)
T PRK14809 98 LARAMLD 104 (357)
T ss_pred HHHHhcC
Confidence 4555554
No 288
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=67.46 E-value=34 Score=29.61 Aligned_cols=78 Identities=9% Similarity=-0.074 Sum_probs=45.8
Q ss_pred CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----C--C-Cc-EEEecch
Q psy16850 50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----Q--K-EA-GLVFTSC 121 (174)
Q Consensus 50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g--~-e~-al~f~sG 121 (174)
+|+.+|+|+.|+ -.+...|.+++++.+++..... .-++...-..+|-+.||+|+ | . ++ -|+.++|
T Consensus 28 ~~~~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G 100 (388)
T PRK07366 28 AGKELIDLSLGS-SDLPAPAHALEAIAQSLHDPST------HGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIG 100 (388)
T ss_pred cCCCeEEeCCCC-CCCCCCHHHHHHHHHHHhCccc------CCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCC
Confidence 456789998875 3466678888888877642111 11222222456777788877 3 2 23 4777777
Q ss_pred hHHHH-HHHHHhcc
Q psy16850 122 YVAND-STLFTLGK 134 (174)
Q Consensus 122 y~aN~-~~i~aL~~ 134 (174)
-.--+ .++.+++.
T Consensus 101 s~~al~~~~~~l~~ 114 (388)
T PRK07366 101 SQEGTAHLPLAVLN 114 (388)
T ss_pred cHHHHHHHHHHhCC
Confidence 65444 44455554
No 289
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=67.14 E-value=14 Score=31.62 Aligned_cols=60 Identities=17% Similarity=0.087 Sum_probs=40.9
Q ss_pred cchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc----EEEecchhHHHHHHHHHhcc
Q psy16850 70 KVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA----GLVFTSCYVANDSTLFTLGK 134 (174)
Q Consensus 70 ~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~----al~f~sGy~aN~~~i~aL~~ 134 (174)
.+.+++.+++...- +. +. -....+.+++.+.||+++|.++ .++.++|..++..++.+|..
T Consensus 13 ~~~~~v~~~~~~~~-~~---~~-~~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~ 76 (363)
T TIGR02326 13 TTSRTVKEAMLFDW-CT---WD-SDYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVP 76 (363)
T ss_pred CCCHHHHHHhCCCC-CC---CC-hHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCC
Confidence 45566666653221 21 21 1245678899999999999863 45668889999999988864
No 290
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=66.98 E-value=86 Score=27.25 Aligned_cols=76 Identities=11% Similarity=-0.054 Sum_probs=40.7
Q ss_pred CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----CC-----CcEEEecc
Q psy16850 50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----QK-----EAGLVFTS 120 (174)
Q Consensus 50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g~-----e~al~f~s 120 (174)
.|+.+|+|+.|+ -.+...+.+++++.+++... ..++...-..+|-+.||+|+ |. +.-++.++
T Consensus 27 ~~~~~i~l~~~~-p~~~~~~~~~~~~~~~~~~~--------~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~ 97 (396)
T PRK09147 27 ADLPPISLSIGE-PKHPTPAFIKDALAANLDGL--------ASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVN 97 (396)
T ss_pred cCCCeEecCCCC-CCCCCCHHHHHHHHHHhhhh--------cCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECC
Confidence 356788988876 23444566777776654321 11111111345556666654 63 22455555
Q ss_pred h-hHHHHHHHHHhcc
Q psy16850 121 C-YVANDSTLFTLGK 134 (174)
Q Consensus 121 G-y~aN~~~i~aL~~ 134 (174)
| -.+-..++.++++
T Consensus 98 G~~~al~~~~~~l~~ 112 (396)
T PRK09147 98 GSREALFAFAQTVID 112 (396)
T ss_pred ChHHHHHHHHHHHcC
Confidence 5 5555556667765
No 291
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=66.81 E-value=29 Score=29.60 Aligned_cols=61 Identities=10% Similarity=0.015 Sum_probs=42.3
Q ss_pred eeEEEeccC-cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHH
Q psy16850 52 KEVTVYCSN-DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLF 130 (174)
Q Consensus 52 ~~~inf~Sn-dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~ 130 (174)
..+|+|++| +-+|+...+ +.+ .++..|..+ + .+|.+.||+++|.+ -|+.++|-.--+.++.
T Consensus 20 ~~~i~l~~ne~p~~~~~~~-~~~---~~~~~yp~~---------~----~~Lr~~ia~~~~~~-~I~it~Gs~~al~~~~ 81 (330)
T PRK05664 20 ADWLDLSTGIAPWPWPVPA-IPA---DAWARLPET---------D----DGLEAAARAYYGAP-QLLPVAGSQAAIQALP 81 (330)
T ss_pred HHheeecCCcCCCCCCCcc-cCH---HHHHhCCCC---------h----HHHHHHHHHHhCCC-CEEECcCHHHHHHHHH
Confidence 357999999 888887543 433 345556521 1 68899999999986 5677777776666554
No 292
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=66.29 E-value=30 Score=29.63 Aligned_cols=75 Identities=9% Similarity=-0.012 Sum_probs=46.7
Q ss_pred CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC----CcEEEecchhH-H
Q psy16850 50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK----EAGLVFTSCYV-A 124 (174)
Q Consensus 50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~----e~al~f~sGy~-a 124 (174)
.++..|+|+.|+= .+...|.+++++.++++.--.+ + +. ..-..+|.+.||+|++. ++-|++++|-. +
T Consensus 17 ~~~~~i~l~~~~~-~~~~p~~~~~~~~~~~~~~~~~----~--Y~-~~~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~ 88 (335)
T PRK14808 17 EKRDRTYLALNEN-PFPFPEDLVDEVFRRLNSDTLR----I--YY-DSPDEELIEKILSYLDTDFLSKNNVSVGNGADEI 88 (335)
T ss_pred CCCceeEecCCCC-CCCCCHHHHHHHHHHhhhhhhh----c--CC-CCChHHHHHHHHHHhCCCCCCcceEEEcCCHHHH
Confidence 4567888988763 5677888999988876431011 0 10 11377899999999983 44566677654 3
Q ss_pred HHHHHHHh
Q psy16850 125 NDSTLFTL 132 (174)
Q Consensus 125 N~~~i~aL 132 (174)
-..++.++
T Consensus 89 i~~~~~~~ 96 (335)
T PRK14808 89 IYVMMLMF 96 (335)
T ss_pred HHHHHHHh
Confidence 33344444
No 293
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=66.05 E-value=36 Score=33.24 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=35.7
Q ss_pred CchHHHHHHHHHHHHhCCCcEEEecch-hHHHHHHHHHhcc
Q psy16850 95 NSLFHEKLEEDVARLHQKEAGLVFTSC-YVANDSTLFTLGK 134 (174)
Q Consensus 95 ~~~~~~~LE~~lA~~~g~e~al~f~sG-y~aN~~~i~aL~~ 134 (174)
...+..+.|+..|+.||.+.+.+...| ..+|.+++.+++.
T Consensus 193 ~~G~i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~~~ 233 (714)
T PRK15400 193 HSGPHKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSAP 233 (714)
T ss_pred CChHHHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHhcC
Confidence 456789999999999999999998888 7789999999886
No 294
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=65.32 E-value=65 Score=27.80 Aligned_cols=77 Identities=10% Similarity=-0.053 Sum_probs=43.3
Q ss_pred CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----CC----CcEEEecchh
Q psy16850 51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----QK----EAGLVFTSCY 122 (174)
Q Consensus 51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g~----e~al~f~sGy 122 (174)
+..+++|++|+- .+...|.+++++.++++..... .++...-..+|-++||+|+ |. +.-+++++|-
T Consensus 30 ~~~~i~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~ 102 (385)
T PRK09276 30 GVDVISLGIGDP-DLPTPDHIIEAMCKAVEDPENH------QYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGS 102 (385)
T ss_pred CCCEEEecCCCC-CCCCCHHHHHHHHHHHhCCCCC------CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCc
Confidence 456789998863 4555677888888777542111 1111112456666777776 42 2347776765
Q ss_pred HHHH-HHHHHhcc
Q psy16850 123 VAND-STLFTLGK 134 (174)
Q Consensus 123 ~aN~-~~i~aL~~ 134 (174)
..-+ .++.++++
T Consensus 103 ~~~i~~~~~~~~~ 115 (385)
T PRK09276 103 KEGIAHIPLAFVN 115 (385)
T ss_pred HHHHHHHHHHhCC
Confidence 4443 44445544
No 295
>KOG0256|consensus
Probab=64.83 E-value=37 Score=31.30 Aligned_cols=106 Identities=15% Similarity=0.122 Sum_probs=66.5
Q ss_pred cCCCCCccchHHHHHHHHHc---------CCCccccccccCCchHHHHHHHHHHHHhC----------CCcEEEecchhH
Q psy16850 63 LGMSCHPKVKSAVREALEKF---------GTGAGGTRNISGNSLFHEKLEEDVARLHQ----------KEAGLVFTSCYV 123 (174)
Q Consensus 63 LGL~~~p~v~~a~~~al~~~---------G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g----------~e~al~f~sGy~ 123 (174)
+|++.+..+.+-....+++. |.+.-.+-...-...=+..+-+++|+|.+ .+..++.+-|..
T Consensus 78 mGlaENqlc~DL~~~wl~k~~~~~~~~~eg~~~f~~la~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ 157 (471)
T KOG0256|consen 78 MGLAENQLCFDLIESWLSKNPEASNCTREGQSSFDELAMFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATS 157 (471)
T ss_pred hhhhhhHHHHHHHHHHHHhChhhhhcccccccchhhHhhcccccCchHHHHHHHHHHHHHhCCCCccCccceEEecccch
Confidence 56777766555555555542 22221111122222224456677777764 566788899999
Q ss_pred HHHHHHHHhcccCCCCeeE---------------------EEEEEecCCC----HHHHHHHHHHhccccccc
Q psy16850 124 ANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANT----TDIIKEASKELQEDMIDL 170 (174)
Q Consensus 124 aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd----~~~Le~~L~~~~~~~~~~ 170 (174)
||-.+..+|++ ||.... +.++-+.-|. .+.||..+.++.+..+.|
T Consensus 158 ane~l~fcLad--pgdafLvPtPyY~gfdrdl~~rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kV 227 (471)
T KOG0256|consen 158 ANETLMFCLAD--PGDAFLVPTPYYPGFDRDLRWRTGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKV 227 (471)
T ss_pred hhHHHHHHhcC--CCceeeecCCCCCcccccceeccCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCce
Confidence 99999999987 454322 2445555666 999999999998876654
No 296
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=64.70 E-value=35 Score=29.30 Aligned_cols=74 Identities=15% Similarity=0.076 Sum_probs=46.0
Q ss_pred cCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC-cEEEecchhHHHH-
Q psy16850 49 DSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-AGLVFTSCYVAND- 126 (174)
Q Consensus 49 ~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-~al~f~sGy~aN~- 126 (174)
+++..+++|+.|.-- +.-.|.+++++.++++... . +... -+.+|-+.||++++.+ +-|++++|-..-+
T Consensus 17 ~~~~~~i~l~~~~~~-~~~p~~~~~a~~~~~~~~~-~-------y~~~-~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~ 86 (356)
T PRK08056 17 ISPDQLLDFSANINP-LGMPVSLKRAIIDNLDCAE-R-------YPDV-EYRHLHQALARHHQVPASWILAGNGETESIF 86 (356)
T ss_pred CChhhEEEeccccCC-CCCCHHHHHHHHHHHHhcc-c-------CcCc-cHHHHHHHHHHHhCcChhhEEECCCHHHHHH
Confidence 346678999988432 4456788888887765422 1 1222 2689999999999753 2466666654433
Q ss_pred HHHHHh
Q psy16850 127 STLFTL 132 (174)
Q Consensus 127 ~~i~aL 132 (174)
.++.++
T Consensus 87 ~~~~~l 92 (356)
T PRK08056 87 AVVSGL 92 (356)
T ss_pred HHHHHh
Confidence 333444
No 297
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=64.51 E-value=15 Score=33.30 Aligned_cols=61 Identities=13% Similarity=0.037 Sum_probs=40.0
Q ss_pred CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC---cEEE---ecchhHHHHHHHHH
Q psy16850 68 HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE---AGLV---FTSCYVANDSTLFT 131 (174)
Q Consensus 68 ~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e---~al~---f~sGy~aN~~~i~a 131 (174)
+|++.+.+.+++.+......++. ....+.++.=+.+|+++|.+ .-+. .++|..||...|-+
T Consensus 54 ~p~~~~~~~~~l~~~~~np~s~~---~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ 120 (431)
T TIGR01788 54 EPEARKLMDETINKNMIDKDEYP---QTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLA 120 (431)
T ss_pred CHHHHHHHHHHHhcCCCCcccCc---cHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHH
Confidence 77888888888864432222221 12366677778899999987 2244 48999999877644
No 298
>PRK07337 aminotransferase; Validated
Probab=63.55 E-value=41 Score=29.13 Aligned_cols=75 Identities=16% Similarity=0.045 Sum_probs=40.7
Q ss_pred eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----C----CCcEEEecchhH
Q psy16850 52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----Q----KEAGLVFTSCYV 123 (174)
Q Consensus 52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g----~e~al~f~sGy~ 123 (174)
..+++|..++ ..+...|.+.+++.++++..- ..++...-..+|.+.||+|+ | .+..++.+.+-.
T Consensus 30 ~~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~ 101 (388)
T PRK07337 30 RDIIHMGIGE-PDFTAPEPVVEAAARALRRGV-------TQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASA 101 (388)
T ss_pred CCEEEeCCcC-CCCCCCHHHHHHHHHHHhcCC-------CCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHH
Confidence 3466776653 223345778888877765311 11222233677888888886 3 234444444444
Q ss_pred HHHHHHHHhcc
Q psy16850 124 ANDSTLFTLGK 134 (174)
Q Consensus 124 aN~~~i~aL~~ 134 (174)
+-..++.++.+
T Consensus 102 al~~~~~~l~~ 112 (388)
T PRK07337 102 ALLLACLALVE 112 (388)
T ss_pred HHHHHHHHhcC
Confidence 44445556654
No 299
>KOG1403|consensus
Probab=63.30 E-value=5.8 Score=35.32 Aligned_cols=76 Identities=18% Similarity=0.079 Sum_probs=54.7
Q ss_pred CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHH
Q psy16850 51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLF 130 (174)
Q Consensus 51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~ 130 (174)
|.++++--+|=--+=.-||+|.+|...- .-+.++-+|.+. ..+.+-.|...+.+=+-.-|++.+||-.||--.+-
T Consensus 46 g~~yLDCInNVaHvghchp~VV~A~~kQ---mat~~tN~RFlh--d~lv~cA~~l~stlPeLsvc~F~NSGSEANDLALR 120 (452)
T KOG1403|consen 46 GTRYLDCINNVAHVGHCHPEVVRAGAKQ---MATISTNNRFLH--DELVQCARTLTSTLPELSVCFFVNSGSEANDLALR 120 (452)
T ss_pred cccHHHHhhhhhhcccCCHHHHHHHHHH---HhHhcccchhhH--HHHHHHHHHHhhcCCCceEEEEecCCchhhHHHHH
Confidence 4455555444333444599998886654 345677778875 56777778888888888889999999999987775
Q ss_pred H
Q psy16850 131 T 131 (174)
Q Consensus 131 a 131 (174)
.
T Consensus 121 L 121 (452)
T KOG1403|consen 121 L 121 (452)
T ss_pred H
Confidence 4
No 300
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=63.17 E-value=36 Score=29.82 Aligned_cols=81 Identities=12% Similarity=0.034 Sum_probs=50.1
Q ss_pred CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh---C-CCcEEEecchhHHHH
Q psy16850 51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH---Q-KEAGLVFTSCYVAND 126 (174)
Q Consensus 51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~---g-~e~al~f~sGy~aN~ 126 (174)
++.+++|+.|+ -.+...|.+++++.++++....... -.-++...-..+|-+++|+++ + .++-|++++|-...+
T Consensus 32 ~~~~i~l~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~--~~~Y~p~~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al 108 (402)
T TIGR03542 32 SADIIRLGIGD-TTQPLPASVIEAFHNAVDELASEET--FRGYGPEQGYPFLREAIAENDYRGRIDPEEIFISDGAKCDV 108 (402)
T ss_pred CCCeEEcCCCC-CCCCCCHHHHHHHHHHHhccccccc--ccCCCCCCCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHH
Confidence 35678888875 3444567788888887765432100 011222334667888899875 2 234588888888777
Q ss_pred HHHHHhcc
Q psy16850 127 STLFTLGK 134 (174)
Q Consensus 127 ~~i~aL~~ 134 (174)
.++..+..
T Consensus 109 ~~l~~l~~ 116 (402)
T TIGR03542 109 FRLQSLFG 116 (402)
T ss_pred HHHHHhcC
Confidence 66666653
No 301
>PRK05839 hypothetical protein; Provisional
Probab=61.80 E-value=47 Score=28.80 Aligned_cols=74 Identities=12% Similarity=0.011 Sum_probs=39.0
Q ss_pred CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC---CCcEEEecchhHHHHH
Q psy16850 51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ---KEAGLVFTSCYVANDS 127 (174)
Q Consensus 51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g---~e~al~f~sGy~aN~~ 127 (174)
|+.+++|++|+ ..+...+.+.+++.+..+.. ... .-..|...+.+.+-+.+++.+| .++-|+.++|-..-+.
T Consensus 23 ~~~~i~l~~~~-p~~~~~~~~~~a~~~~~~~~-~~Y---~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~ 97 (374)
T PRK05839 23 EYKGLDLTIGE-PQFETPKFIQDALKNNAHLL-NKY---PKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLF 97 (374)
T ss_pred CCCeEEcCCCC-CCCCCCHHHHHHHHHHhhcc-CCC---CCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHH
Confidence 56788888865 34444555666655443211 010 0113444455555555555556 3455777888775554
Q ss_pred HH
Q psy16850 128 TL 129 (174)
Q Consensus 128 ~i 129 (174)
.+
T Consensus 98 ~~ 99 (374)
T PRK05839 98 NF 99 (374)
T ss_pred HH
Confidence 33
No 302
>PLN03032 serine decarboxylase; Provisional
Probab=61.00 E-value=25 Score=31.33 Aligned_cols=64 Identities=16% Similarity=0.021 Sum_probs=39.4
Q ss_pred CccchHHHHHHHH-HcCCCccccccccCCchHHHHHHHHHHHHhCCCc----EEEecchhHHHHHHHHH
Q psy16850 68 HPKVKSAVREALE-KFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA----GLVFTSCYVANDSTLFT 131 (174)
Q Consensus 68 ~p~v~~a~~~al~-~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~----al~f~sGy~aN~~~i~a 131 (174)
++.+.+++.+.+. .+|.-++.+..-.....+-+++=+.+|+++|.+. .++.++|..+|+..+.+
T Consensus 36 ~~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ 104 (374)
T PLN03032 36 DYGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILV 104 (374)
T ss_pred ChHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHH
Confidence 3445666666553 3553222222222345666777778899999752 37778889999877654
No 303
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=60.89 E-value=20 Score=32.69 Aligned_cols=67 Identities=10% Similarity=0.060 Sum_probs=42.8
Q ss_pred cccCCC-----CCccchHHHHHHHHHcCCCccc-cccccCCchHHHHHHHHHHHHhCCCcEEEe-cchhHHHHH
Q psy16850 61 DYLGMS-----CHPKVKSAVREALEKFGTGAGG-TRNISGNSLFHEKLEEDVARLHQKEAGLVF-TSCYVANDS 127 (174)
Q Consensus 61 dYLGL~-----~~p~v~~a~~~al~~~G~gs~~-Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f-~sGy~aN~~ 127 (174)
+|+|+. ..|.+.+++.+...-++...-. .....|...+..++++.+|+++|.+.+.++ ++|-.+++.
T Consensus 71 ~~~g~G~~~~~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~~~~l~~~~GA~a~~~ 144 (481)
T PRK04366 71 GFYPLGSCTMKYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMDAVTLQPAAGAHGELT 144 (481)
T ss_pred ceecCcccCCCCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCCceEEEeCcHHHHHHH
Confidence 455655 3556666666542222322222 235568889999999999999999877666 566555554
No 304
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=60.18 E-value=34 Score=31.56 Aligned_cols=80 Identities=16% Similarity=0.061 Sum_probs=56.9
Q ss_pred cCCeeEEEeccCcc---cCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC---CCcEEEecchh
Q psy16850 49 DSEKEVTVYCSNDY---LGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ---KEAGLVFTSCY 122 (174)
Q Consensus 49 ~~g~~~inf~SndY---LGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g---~e~al~f~sGy 122 (174)
.+|+++|+-.|-=+ .|-+ ||+|.+|+.+-+++..-.. .-. .++..-.+|-++|+++.. ...+.+.+||-
T Consensus 41 ~~G~r~lDg~sg~W~~~~Gh~-~~~i~~Ai~~Q~~~l~~~~--~~~--~t~~Pa~~LA~~L~~~aP~~~l~~vFf~~sGS 115 (449)
T COG0161 41 IDGRRYLDGMSGLWCVNHGHG-RPEIAEAIKKQLDKLPHVM--FGG--FTHEPAIELAEKLAELAPEGGLDHVFFTDSGS 115 (449)
T ss_pred CCCCEEEecccHHHHhhcCcC-CHHHHHHHHHHHHhCCchh--hcc--cCCchHHHHHHHHHHhCCCCCccEEEEeCCch
Confidence 46777776554222 3333 9999999999888755221 111 234458999999999998 56788889999
Q ss_pred HHHHHHHHHhc
Q psy16850 123 VANDSTLFTLG 133 (174)
Q Consensus 123 ~aN~~~i~aL~ 133 (174)
.||=..|.-..
T Consensus 116 eAvEtAlKma~ 126 (449)
T COG0161 116 EAVETALKMAL 126 (449)
T ss_pred HHHHHHHHHHH
Confidence 99999887544
No 305
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=59.70 E-value=77 Score=28.08 Aligned_cols=41 Identities=7% Similarity=0.135 Sum_probs=27.7
Q ss_pred ccCCchHHHHHHHHHHHHhCCCcE--EEecchhHHHHHHHHHh
Q psy16850 92 ISGNSLFHEKLEEDVARLHQKEAG--LVFTSCYVANDSTLFTL 132 (174)
Q Consensus 92 ~~G~~~~~~~LE~~lA~~~g~e~a--l~f~sGy~aN~~~i~aL 132 (174)
..|......++++.+|+++|.+.. +++++|..+..+++.++
T Consensus 107 ~~g~~~~~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~ 149 (447)
T PRK00451 107 SQGTLQAIFEYQTMICELTGMDVANASMYDGATALAEAALMAV 149 (447)
T ss_pred chHHHHHHHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHH
Confidence 455666777888899999998643 45555555555666665
No 306
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=58.05 E-value=24 Score=30.85 Aligned_cols=64 Identities=14% Similarity=0.068 Sum_probs=37.6
Q ss_pred CccchHHHHHHHHHcCCCc-cccccc-cCCchHHHHHHHHHHHHhCC--CcEEEecchhHH-HHHHHHH
Q psy16850 68 HPKVKSAVREALEKFGTGA-GGTRNI-SGNSLFHEKLEEDVARLHQK--EAGLVFTSCYVA-NDSTLFT 131 (174)
Q Consensus 68 ~p~v~~a~~~al~~~G~gs-~~Sr~~-~G~~~~~~~LE~~lA~~~g~--e~al~f~sGy~a-N~~~i~a 131 (174)
.+.++++..+.+..+.... .+.... .-.....+++.+.||+++|. ++.++|++|... +..++.+
T Consensus 36 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~~ 104 (406)
T PRK09295 36 PSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVANS 104 (406)
T ss_pred CHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHH
Confidence 5567888877776543221 112111 11246678899999999996 346777776544 3344444
No 307
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=57.52 E-value=23 Score=30.76 Aligned_cols=70 Identities=13% Similarity=0.004 Sum_probs=40.9
Q ss_pred ccCCCCCccchHHHHHHHHHcCCC--ccccccccCCchHHHHHHHHHHHHhCC--CcEEEecchh-HHHHHHHHHh
Q psy16850 62 YLGMSCHPKVKSAVREALEKFGTG--AGGTRNISGNSLFHEKLEEDVARLHQK--EAGLVFTSCY-VANDSTLFTL 132 (174)
Q Consensus 62 YLGL~~~p~v~~a~~~al~~~G~g--s~~Sr~~~G~~~~~~~LE~~lA~~~g~--e~al~f~sGy-~aN~~~i~aL 132 (174)
..|+ ..+.+.++..+.++.+... .+....-.-.....+++.+.||+++|. ++.|+|++|- .+.-.++.++
T Consensus 27 ~~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~~~~ 101 (401)
T PRK10874 27 ATAL-KPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSY 101 (401)
T ss_pred cccC-CCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHh
Confidence 3354 3567888888887654311 111111111346688888999999998 3456666664 4444455555
No 308
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=55.65 E-value=36 Score=31.06 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=36.3
Q ss_pred ccCCchHHHHHHHHHHHHhCCCcEEEecchh-HHHHHHHHHhcc
Q psy16850 92 ISGNSLFHEKLEEDVARLHQKEAGLVFTSCY-VANDSTLFTLGK 134 (174)
Q Consensus 92 ~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy-~aN~~~i~aL~~ 134 (174)
+.-...+..+.|+.+|+.+|.+.+.+...|- .+|.++|.+++.
T Consensus 61 L~~p~G~I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~~~ 104 (417)
T PF01276_consen 61 LHDPEGIIKEAEELAARAFGADKTFFLVNGSTSGNQAMIMALCR 104 (417)
T ss_dssp TTTTBTHHHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHHTT
T ss_pred ccCCccHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHhcC
Confidence 3345678999999999999999998887775 569999999987
No 309
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=54.78 E-value=69 Score=28.83 Aligned_cols=64 Identities=20% Similarity=0.197 Sum_probs=43.9
Q ss_pred CccchHHHHHHHHHcCC--CccccccccCCchHHHHHHHHHHHHhCCC--cEEEecchhHHHHHHHHH
Q psy16850 68 HPKVKSAVREALEKFGT--GAGGTRNISGNSLFHEKLEEDVARLHQKE--AGLVFTSCYVANDSTLFT 131 (174)
Q Consensus 68 ~p~v~~a~~~al~~~G~--gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e--~al~f~sGy~aN~~~i~a 131 (174)
...|.++..+..+.|.. +.+....-.-....+++..+.+|+|+|.+ +.|+|++|-..-+-.+..
T Consensus 35 p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~ 102 (405)
T COG0520 35 PQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVAR 102 (405)
T ss_pred CHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHHH
Confidence 44567777776666653 32333333333568999999999999987 569999987766665554
No 310
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=54.29 E-value=71 Score=27.74 Aligned_cols=76 Identities=12% Similarity=-0.007 Sum_probs=42.1
Q ss_pred CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----C----CC--cEEEec
Q psy16850 50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----Q----KE--AGLVFT 119 (174)
Q Consensus 50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g----~e--~al~f~ 119 (174)
.|+.+++|+.|+ -.+...|.+++++.+.+.. . ..++...-..+|-+++|+|+ | .+ +-|+++
T Consensus 26 ~~~~~i~l~~~~-p~~~~~~~~~~a~~~~~~~--~------~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it 96 (393)
T TIGR03538 26 ASKPPIALSIGE-PKHPTPAFVLEALRENLHG--L------STYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPV 96 (393)
T ss_pred cCCCeEEecCCC-CCCCCCHHHHHHHHHHhhc--c------CCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEEC
Confidence 356788888876 3445566677777665431 1 11222222456666777776 3 22 357777
Q ss_pred chhHHHH-HHHHHhcc
Q psy16850 120 SCYVAND-STLFTLGK 134 (174)
Q Consensus 120 sGy~aN~-~~i~aL~~ 134 (174)
+|-..-+ .++.++++
T Consensus 97 ~Ga~~al~~~~~~l~~ 112 (393)
T TIGR03538 97 NGTREALFAFAQAVIN 112 (393)
T ss_pred CCcHHHHHHHHHHHcC
Confidence 7755544 34455654
No 311
>PF11015 DUF2853: Protein of unknown function (DUF2853); InterPro: IPR021274 This bacterial family of proteins has no known function. ; PDB: 2PYQ_B.
Probab=51.16 E-value=22 Score=26.35 Aligned_cols=44 Identities=27% Similarity=0.400 Sum_probs=27.0
Q ss_pred ccCCCCCccchHHHHHHHHHcCCC-ccccccccCCchHHHHHHHHHHHHhCCCc
Q psy16850 62 YLGMSCHPKVKSAVREALEKFGTG-AGGTRNISGNSLFHEKLEEDVARLHQKEA 114 (174)
Q Consensus 62 YLGL~~~p~v~~a~~~al~~~G~g-s~~Sr~~~G~~~~~~~LE~~lA~~~g~e~ 114 (174)
=|||...|++-+|..+.+++||-+ -.=+|.+ +=-.||+.||+++
T Consensus 57 KLGl~d~~~ld~aI~~V~e~mg~s~r~K~R~~---------~YYlLak~fgkes 101 (102)
T PF11015_consen 57 KLGLSDDPELDAAINKVCEKMGKSNRNKYRAV---------FYYLLAKHFGKES 101 (102)
T ss_dssp CT---SSHHHHHHHHHHHHHH-TT-S--BHHH---------HHHHHHHHTT-GG
T ss_pred HcCCCCcHHHHHHHHHHHHHhccccCCCceee---------hHHHHHHHhCccc
Confidence 589999999999999999999854 3333332 2334788888764
No 312
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=51.03 E-value=1.2e+02 Score=27.29 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=11.8
Q ss_pred CCHHHHHHHHHHhcc
Q psy16850 151 NTTDIIKEASKELQE 165 (174)
Q Consensus 151 Nd~~~Le~~L~~~~~ 165 (174)
-|++.||+.+++.++
T Consensus 182 ~~~~~le~a~~~a~~ 196 (447)
T PLN02607 182 VTPQALEAAYQEAEA 196 (447)
T ss_pred CCHHHHHHHHHHHHH
Confidence 478999999987544
No 313
>PF13693 HTH_35: Winged helix-turn-helix DNA-binding; PDB: 1NEQ_A 1NER_A.
Probab=50.00 E-value=4.8 Score=28.33 Aligned_cols=44 Identities=18% Similarity=0.089 Sum_probs=30.6
Q ss_pred HHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHH
Q psy16850 80 EKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN 125 (174)
Q Consensus 80 ~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN 125 (174)
+++|++++.-+... ...+-.-|+.||+++|.+...+++|=|...
T Consensus 23 r~~Gl~~~tl~nal--~r~~pk~E~~IA~aLgv~P~eIWPsRY~~~ 66 (78)
T PF13693_consen 23 REAGLSSSTLRNAL--RRPWPKGERIIADALGVPPEEIWPSRYPDD 66 (78)
T ss_dssp HHHSS-HHHHHHTT--TSS-HHHHHHHHHHTTS-HHHHSTTT-SS-
T ss_pred HHcCCCHHHHHHHH--cCCChHHHHHHHHHHCcCHHHhCchhhhhc
Confidence 56787766555554 344677899999999999999999998753
No 314
>KOG0257|consensus
Probab=49.55 E-value=1.3e+02 Score=27.54 Aligned_cols=99 Identities=19% Similarity=0.128 Sum_probs=58.9
Q ss_pred chHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC----c-EEEecchhHHHHHHHHHhcccCCCCeeEE--
Q psy16850 71 VKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE----A-GLVFTSCYVANDSTLFTLGKMIPYFTELI-- 143 (174)
Q Consensus 71 v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e----~-al~f~sGy~aN~~~i~aL~~~~~g~~~s~-- 143 (174)
+.++++++++.-. -...+|. .|..++...|-+.+++|+|.+ + .+|..-+|.+=...+.+|++ +|+.+.+
T Consensus 49 v~ea~~~~~~~~~-~~qYt~~-~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~--~GDeVii~e 124 (420)
T KOG0257|consen 49 VTEAAKNAAKEPS-TNQYTRG-YGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLN--PGDEVIVFE 124 (420)
T ss_pred HHHHHHHHhccch-hcccccc-CCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcC--CCCEEEEec
Confidence 5677777664421 1222333 578889999999999988743 3 45555555555555566655 3333221
Q ss_pred -----------------EEEE-----------ecCCCHHHHHHHHHHhcccccccCCC
Q psy16850 144 -----------------YFYR-----------FLANTTDIIKEASKELQEDMIDLTPK 173 (174)
Q Consensus 144 -----------------~~~~-----------f~HNd~~~Le~~L~~~~~~~~~~~~~ 173 (174)
.++. -=-.|++.||+.+.+-.+--|=-||.
T Consensus 125 P~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~ntPh 182 (420)
T KOG0257|consen 125 PFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILNTPH 182 (420)
T ss_pred CcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhccCCccEEEEeCCC
Confidence 1111 11468899999888776666666663
No 315
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=49.27 E-value=52 Score=28.35 Aligned_cols=63 Identities=21% Similarity=0.273 Sum_probs=33.0
Q ss_pred CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh---CC--CcEEEecch-hHHHHHHHHHh
Q psy16850 68 HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH---QK--EAGLVFTSC-YVANDSTLFTL 132 (174)
Q Consensus 68 ~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~---g~--e~al~f~sG-y~aN~~~i~aL 132 (174)
.+.|++++.+.++.+....+ +....| ......|++.++++. +. ++-++|++| ..++..++.++
T Consensus 12 ~~~v~~~~~~~~~~~~~n~~-~~~~~~-~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~ 80 (382)
T TIGR03403 12 DPKVKELMDPFFCDIYGNPN-SLHQFG-TATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKGV 80 (382)
T ss_pred CHHHHHHHHHHHHhcCcCCc-cccHHH-HHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHH
Confidence 55677777777766543333 222233 234555666555544 42 344555544 55655555554
No 316
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=48.03 E-value=6 Score=35.49 Aligned_cols=67 Identities=31% Similarity=0.277 Sum_probs=0.0
Q ss_pred cCCCC-CccchHHHHHHHHHcCC----CccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcc
Q psy16850 63 LGMSC-HPKVKSAVREALEKFGT----GAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGK 134 (174)
Q Consensus 63 LGL~~-~p~v~~a~~~al~~~G~----gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~ 134 (174)
||=+- +|++.+++.++...|-. =..|.| |. -+..+|+.|+.+.|.|+|++.++.-.|-+-++.+|+.
T Consensus 13 LGRs~l~~~a~~a~~~~a~~Y~nLE~dl~~G~R---g~--R~~~v~~ll~~ltgAeaA~VvNnnaAAv~L~l~~la~ 84 (367)
T PF03841_consen 13 LGRSPLSEEAIEAVAEVASGYSNLEYDLETGKR---GS--RYAHVEELLCELTGAEAALVVNNNAAAVLLALNTLAK 84 (367)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccc---cc--ccccccccccccccccccccccccccccccccccccc
Confidence 44443 67788888776655431 011223 11 1456899999999999999999999999999998885
No 317
>KOG4492|consensus
Probab=47.78 E-value=13 Score=32.42 Aligned_cols=57 Identities=19% Similarity=0.215 Sum_probs=46.4
Q ss_pred CcccCCCCCccchHHHHHHHHHcCC--Cc----cccccccCCchHHHHHHHHHHHHhCCCcEE
Q psy16850 60 NDYLGMSCHPKVKSAVREALEKFGT--GA----GGTRNISGNSLFHEKLEEDVARLHQKEAGL 116 (174)
Q Consensus 60 ndYLGL~~~p~v~~a~~~al~~~G~--gs----~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al 116 (174)
.||-.+..-|+-..|-....++||+ +| +++|-..|....-.-.|+.|+++.|.|=.-
T Consensus 91 HDYSDMD~~PRPSHAD~TY~EKYGvKASSGGGRsSARETIGRVA~GAiAeK~L~q~~gvEIvA 153 (368)
T KOG4492|consen 91 HDYSDMDVAPRPSHADATYDEKYGVKASSGGGRSSARETIGRVAPGALAKKILKQFAGTEILA 153 (368)
T ss_pred CchhhhccCCCCcccccchhhhcCeeeccCCCchhhhhhhhccCchHHHHHHHHHhcCceEEe
Confidence 4999999999999998889999996 33 345666777777788999999999998443
No 318
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=47.19 E-value=1.8e+02 Score=24.74 Aligned_cols=72 Identities=11% Similarity=0.040 Sum_probs=38.5
Q ss_pred EEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----C--C-Cc-EEEecchhH-H
Q psy16850 54 VTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----Q--K-EA-GLVFTSCYV-A 124 (174)
Q Consensus 54 ~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g--~-e~-al~f~sGy~-a 124 (174)
+++|++.+ ..+...|++++++.+.... .. .++...-..+|.+.+|+|+ | . ++ -|++++|-. +
T Consensus 2 ~~~~~~g~-p~~~~~~~~~~~~~~~~~~--~~------~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~a 72 (350)
T TIGR03537 2 LFDFGTGD-PKEPTPPFIRKALIDAVPE--VS------QYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEA 72 (350)
T ss_pred eEeccCCC-CCCCCCHHHHHHHHHHHhc--cC------CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHH
Confidence 56777765 4556567777777665422 11 1222222457777777775 5 2 22 577777753 2
Q ss_pred HHHHHHHhcc
Q psy16850 125 NDSTLFTLGK 134 (174)
Q Consensus 125 N~~~i~aL~~ 134 (174)
-..++.++++
T Consensus 73 i~~~~~~~~~ 82 (350)
T TIGR03537 73 IFHFPLVFID 82 (350)
T ss_pred HHHHHHHHcC
Confidence 2334445554
No 319
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=46.13 E-value=1.5e+02 Score=23.52 Aligned_cols=63 Identities=14% Similarity=0.062 Sum_probs=36.6
Q ss_pred chHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcc
Q psy16850 71 VKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGK 134 (174)
Q Consensus 71 v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~ 134 (174)
-.+++.++++++|.-....-...+.....+.+.+.+......++|++..+...| ++++.++..
T Consensus 136 R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a-~g~~~a~~~ 198 (268)
T cd06277 136 RYEGYKKALLDHGIPFNEDYDITEKEEDEEDIGKFIDELKPLPTAFFCSNDGVA-FLLIKVLKE 198 (268)
T ss_pred HHHHHHHHHHHcCCCCCcceEEEcchhHHHHHHHHHhcCCCCCCEEEECCcHHH-HHHHHHHHH
Confidence 445677777777753322111122223345555555443344678888877777 888888765
No 320
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=45.28 E-value=1e+02 Score=26.42 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=42.5
Q ss_pred eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc-EEEecchhHHHH-HHH
Q psy16850 52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA-GLVFTSCYVAND-STL 129 (174)
Q Consensus 52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~-al~f~sGy~aN~-~~i 129 (174)
..+++|++|. -.+...|.+++++.+.+.... + +.... ..+|.+++|+|++.+. -|++++|-.--+ .++
T Consensus 19 ~~~~~l~~~~-~~~~~p~~~~~a~~~~~~~~~-~-------Y~~~~-~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~ 88 (354)
T PRK06358 19 NMILDFSANI-NPLGVPESLKQAITENLDKLV-E-------YPDPD-YLELRKRIASFEQLDLENVILGNGATELIFNIV 88 (354)
T ss_pred cceEEecCCC-CCCCCCHHHHHHHHHHHHhhh-c-------CCCcc-HHHHHHHHHHHhCCChhhEEECCCHHHHHHHHH
Confidence 4478998863 333446888888887653211 1 11222 5789999999997542 466666654444 333
Q ss_pred HHh
Q psy16850 130 FTL 132 (174)
Q Consensus 130 ~aL 132 (174)
.++
T Consensus 89 ~~~ 91 (354)
T PRK06358 89 KVT 91 (354)
T ss_pred HHh
Confidence 444
No 321
>PRK13578 ornithine decarboxylase; Provisional
Probab=44.84 E-value=61 Score=31.73 Aligned_cols=40 Identities=8% Similarity=0.023 Sum_probs=34.3
Q ss_pred CchHHHHHHHHHHHHhCCCcEEEecchh-HHHHHHHHHhcc
Q psy16850 95 NSLFHEKLEEDVARLHQKEAGLVFTSCY-VANDSTLFTLGK 134 (174)
Q Consensus 95 ~~~~~~~LE~~lA~~~g~e~al~f~sGy-~aN~~~i~aL~~ 134 (174)
...+..+.|+..|+.||.+.+.+...|. .+|.++|.+++.
T Consensus 172 ~eG~i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~~~ 212 (720)
T PRK13578 172 HEGAAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALLT 212 (720)
T ss_pred CChHHHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHhcC
Confidence 5678899999999999999997777775 569999998886
No 322
>PTZ00377 alanine aminotransferase; Provisional
Probab=44.59 E-value=2.4e+02 Score=25.45 Aligned_cols=89 Identities=16% Similarity=0.106 Sum_probs=47.7
Q ss_pred ccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC-------CcEEEecchhH-HHHHHHHHhc-ccCCCC
Q psy16850 69 PKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK-------EAGLVFTSCYV-ANDSTLFTLG-KMIPYF 139 (174)
Q Consensus 69 p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~-------e~al~f~sGy~-aN~~~i~aL~-~~~~g~ 139 (174)
..+++++.++++..+.+. ..++...-..+|-+.||+|++. ++-|++++|-. +-..++.++. + +|+
T Consensus 91 ~~~~~~~~~~~~~~~~~~----~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~--~gD 164 (481)
T PTZ00377 91 ADVVARAKEYLNAIGGGT----GAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGD--PSD 164 (481)
T ss_pred HHHHHHHHHHHHhCCCcc----cCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccC--CCC
Confidence 356777777666543221 2233333356677777877642 23466666644 4444555665 3 344
Q ss_pred eeE-----------------EEEEEec-------CCCHHHHHHHHHHh
Q psy16850 140 TEL-----------------IYFYRFL-------ANTTDIIKEASKEL 163 (174)
Q Consensus 140 ~~s-----------------~~~~~f~-------HNd~~~Le~~L~~~ 163 (174)
.+. +.++.++ .-|++.||+.+...
T Consensus 165 ~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~ 212 (481)
T PTZ00377 165 GVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQA 212 (481)
T ss_pred EEEECCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHH
Confidence 332 1222222 24679999998753
No 323
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=42.49 E-value=49 Score=33.34 Aligned_cols=103 Identities=9% Similarity=-0.009 Sum_probs=61.1
Q ss_pred cccCCCCCccchHHHHHHH-HHc----CCCccccc-cccCCchHHHHHHHHHHHHhCCCcEEEe-cchhHHHHHHHHHhc
Q psy16850 61 DYLGMSCHPKVKSAVREAL-EKF----GTGAGGTR-NISGNSLFHEKLEEDVARLHQKEAGLVF-TSCYVANDSTLFTLG 133 (174)
Q Consensus 61 dYLGL~~~p~v~~a~~~al-~~~----G~gs~~Sr-~~~G~~~~~~~LE~~lA~~~g~e~al~f-~sGy~aN~~~i~aL~ 133 (174)
.++|+..-.--..++.+.+ -.+ +...-..- ...|...+..++|+.||+++|.+.+-++ ++|-+++.+.+-++-
T Consensus 488 ~fi~lGsctmk~na~v~~l~~s~~ef~t~hPyqPe~~sqG~lq~i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR 567 (939)
T TIGR00461 488 SMIPLGSCTMKLNATAEMMPITWPEFSNIHPFQPSNQVEGYQELIAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIR 567 (939)
T ss_pred cCCCCccCCCccCHHHHHHHhcchhhcCcCCCCchHHhHHHHHHHHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHH
Confidence 5788876433333333333 222 22222222 4567889999999999999999866444 567778885554443
Q ss_pred c---------c--------CCCCeeE------EEEEEecCC-----CHHHHHHHHHHh
Q psy16850 134 K---------M--------IPYFTEL------IYFYRFLAN-----TTDIIKEASKEL 163 (174)
Q Consensus 134 ~---------~--------~~g~~~s------~~~~~f~HN-----d~~~Le~~L~~~ 163 (174)
. . ..|+... ++++..+-+ |+++|+.++.+.
T Consensus 568 ~y~~~rge~~R~~vlip~saHgtnPasa~~~G~~Vv~V~~d~~G~iDle~L~~~i~~~ 625 (939)
T TIGR00461 568 SYHESRGENHRNICLIPVSAHGTNPASAAMAGMQVVPVNCDQDGNIDLVDLKNKAEQH 625 (939)
T ss_pred HHHHhcCCCCCCEEEEEccccCcCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhhc
Confidence 2 0 1111011 255555554 899999999863
No 324
>PLN00415 3-ketoacyl-CoA synthase
Probab=41.72 E-value=59 Score=30.14 Aligned_cols=62 Identities=23% Similarity=0.258 Sum_probs=39.6
Q ss_pred cCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHH--HhCCCc--EEEecchhHHHHHHHHHhcc
Q psy16850 63 LGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVAR--LHQKEA--GLVFTSCYVANDSTLFTLGK 134 (174)
Q Consensus 63 LGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~--~~g~e~--al~f~sGy~aN~~~i~aL~~ 134 (174)
|||+ ++=.++..+.+.+||--|++|=. -.|+...|+ ....+. .+-|++||.+|..++.++-.
T Consensus 377 LgL~--~~~le~Sr~vL~r~GN~SSsSV~--------yvL~~~~~~~~~~~Gdrvl~iaFGpGf~~es~v~~~~~~ 442 (466)
T PLN00415 377 LGLS--EFDLEPSRMTLHRFGNTSSSSLW--------YELAYVEAKCRVKRGDRVWQLAFGSGFKCNSIVWRALRT 442 (466)
T ss_pred cCCC--HHHHHHHHHHHHHhCCchhhhHH--------HHHHHHHhhccCCCCCEEEEEEEcCcchhhHhHHHHhcc
Confidence 5553 44566777788899965554432 234443333 112232 47899999999999999965
No 325
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=41.04 E-value=82 Score=28.94 Aligned_cols=36 Identities=22% Similarity=0.389 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhCC---------CcEEEecc-hhHHHHHHHHHhcc
Q psy16850 99 HEKLEEDVARLHQK---------EAGLVFTS-CYVANDSTLFTLGK 134 (174)
Q Consensus 99 ~~~LE~~lA~~~g~---------e~al~f~s-Gy~aN~~~i~aL~~ 134 (174)
..+|-+.||+|++. ++-|++++ +-.|...++.+|++
T Consensus 96 ~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~ 141 (496)
T PLN02376 96 LKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLAD 141 (496)
T ss_pred cHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCC
Confidence 35666777777651 22354555 45566677777765
No 326
>PRK15029 arginine decarboxylase; Provisional
Probab=40.34 E-value=73 Score=31.33 Aligned_cols=39 Identities=10% Similarity=-0.007 Sum_probs=33.0
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhH-HHHHHHHHhcc
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYV-ANDSTLFTLGK 134 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~-aN~~~i~aL~~ 134 (174)
..+..+.|+..|+.||.+.+.+...|-. +|.++|.+++.
T Consensus 204 ~G~I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~~~ 243 (755)
T PRK15029 204 TGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMT 243 (755)
T ss_pred CcHHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHhcC
Confidence 4567899999999999999988877764 58899998876
No 327
>PLN02724 Molybdenum cofactor sulfurase
Probab=39.82 E-value=3.5e+02 Score=26.56 Aligned_cols=63 Identities=19% Similarity=-0.062 Sum_probs=37.4
Q ss_pred chHHHHHHHHHHHHhCCC--c-EEEecchhHHHHHHH-HHhcccCCCCeeEEEEEEecCCCHHHHHHHHH
Q psy16850 96 SLFHEKLEEDVARLHQKE--A-GLVFTSCYVANDSTL-FTLGKMIPYFTELIYFYRFLANTTDIIKEASK 161 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e--~-al~f~sGy~aN~~~i-~aL~~~~~g~~~s~~~~~f~HNd~~~Le~~L~ 161 (174)
....++.=+.+|+|+|.+ + .++|++|-..-+-++ ..+ ..-+|.++.. -...|++.-....+.+
T Consensus 77 ~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~l-~~~~gd~Iv~--t~~eH~svl~~~~~a~ 143 (805)
T PLN02724 77 SDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGETF-PWSSESHFCY--TLENHNSVLGIREYAL 143 (805)
T ss_pred HHHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHHC-CCCCCCeEEE--eeccccchHHHHHHHH
Confidence 457888889999999973 3 578887554443333 333 1224554432 3556766665554443
No 328
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=39.48 E-value=1e+02 Score=26.68 Aligned_cols=77 Identities=12% Similarity=0.006 Sum_probs=47.4
Q ss_pred ccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeEEEEEEecCCCHHHHHHHHHHhcccccc
Q psy16850 90 RNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTELIYFYRFLANTTDIIKEASKELQEDMID 169 (174)
Q Consensus 90 r~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s~~~~~f~HNd~~~Le~~L~~~~~~~~~ 169 (174)
+.+.|.. ...+|.+.+.++.+...+++++.....+ +....+...+..-. ...+...++.+.+.++++++...+.++|
T Consensus 4 ~i~~g~g-~l~~l~~~l~~~~~~~~~liv~d~~~~~-~~~~~v~~~l~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~d 80 (339)
T cd08173 4 DVVVGHG-VLEKIPNVLRDLLLGGRVLVVTGPTTKS-IAGKKVEALLEDEG-EVDVVIVEDATYEEVEKVESSARDIGAD 80 (339)
T ss_pred eEEECCC-HHHHHHHHHHHhCCCCeEEEEECCchHH-HHHHHHHHHHHhcC-CeEEEEeCCCCHHHHHHHHHHhhhcCCC
Confidence 3444543 4567888888776667788887777666 44443332111111 2223356778999999999888776554
No 329
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=39.26 E-value=1.1e+02 Score=27.82 Aligned_cols=106 Identities=12% Similarity=0.058 Sum_probs=57.3
Q ss_pred CCCCccchHHHHHHHHHcC------CCccccccccCC-chHHHHHHHHHHHHhCCCcEEEecchhH---------HHHHH
Q psy16850 65 MSCHPKVKSAVREALEKFG------TGAGGTRNISGN-SLFHEKLEEDVARLHQKEAGLVFTSCYV---------ANDST 128 (174)
Q Consensus 65 L~~~p~v~~a~~~al~~~G------~gs~~Sr~~~G~-~~~~~~LE~~lA~~~g~e~al~f~sGy~---------aN~~~ 128 (174)
|..+..++++..++.++|. .++|.+-++.-. ..+..+++++.-++.|.+-.-+-+-||. |..++
T Consensus 74 fGg~~~L~~aI~~~~~~~~P~~I~V~ttC~~eiIGDDi~~v~~~~~~~~p~~~~~pvi~v~tpgF~g~~~~G~~~a~~al 153 (455)
T PRK14476 74 LGGDENVEEAILNICKKAKPKIIGLCTTGLTETRGDDVAGALKEIRARHPELADTPIVYVSTPDFKGALEDGWAAAVEAI 153 (455)
T ss_pred eCCHHHHHHHHHHHHHhhCCCEEEEeCcchHhhhhccHHHHHHHHHhhccccCCCeEEEecCCCCCCcHHHHHHHHHHHH
Confidence 3456789999999988875 345545444322 2334455555443335443333344443 33355
Q ss_pred HHHhccc---CCCCeeEEEEEE---ecCCCHHHHHHHHHHhccccccc
Q psy16850 129 LFTLGKM---IPYFTELIYFYR---FLANTTDIIKEASKELQEDMIDL 170 (174)
Q Consensus 129 i~aL~~~---~~g~~~s~~~~~---f~HNd~~~Le~~L~~~~~~~~~~ 170 (174)
+..+... .+...-++.+.- +.-.|++.|+++|+..+=+.+-+
T Consensus 154 ~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v~~l 201 (455)
T PRK14476 154 VEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEPIIL 201 (455)
T ss_pred HHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCceEEe
Confidence 5555432 111222344442 33578899999998887655443
No 330
>PRK06855 aminotransferase; Validated
Probab=37.98 E-value=2.2e+02 Score=25.35 Aligned_cols=66 Identities=14% Similarity=-0.023 Sum_probs=31.3
Q ss_pred ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----CC---CcEEEecchhHHHHHHHHHhc
Q psy16850 62 YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----QK---EAGLVFTSCYVANDSTLFTLG 133 (174)
Q Consensus 62 YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g~---e~al~f~sGy~aN~~~i~aL~ 133 (174)
+.++...+.+++++.++++.-+. +-++...=..+|-+.||+|+ |. ++-|+.++|-..-+..+..++
T Consensus 44 ~~~~~~p~~~~~a~~~~~~~~~~------~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~l~ 116 (433)
T PRK06855 44 AKGEKIPDWMKEIVAELVMDDKS------YGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYGLL 116 (433)
T ss_pred ccCCCCCHHHHHHHHHHhhcCCC------CCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHHhc
Confidence 34666677777777776543110 11111112344445555554 31 123666666555444444444
No 331
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.60 E-value=2.1e+02 Score=22.74 Aligned_cols=61 Identities=10% Similarity=-0.004 Sum_probs=34.5
Q ss_pred chHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC---CCcEEEecchhHHHHHHHHHhcc
Q psy16850 71 VKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ---KEAGLVFTSCYVANDSTLFTLGK 134 (174)
Q Consensus 71 v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g---~e~al~f~sGy~aN~~~i~aL~~ 134 (174)
-.+.+.++++.+|.-........... .+.-++.+.+++. ..++|++++...| .+++.+|..
T Consensus 134 R~~Gf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ai~~~~d~~a-~g~~~~l~~ 197 (269)
T cd06281 134 RLEGYKAAFAAAGLPPDPALVRLSTP--AASGFDATRALLALPDRPTAIIAGGTQVL-VGVLRALRE 197 (269)
T ss_pred HHHHHHHHHHHcCCCCCHHHeecCcH--HHHHHHHHHHHHcCCCCCcEEEEcCcHHH-HHHHHHHHH
Confidence 34666777777765322111222221 4444555556653 3578877766666 589998865
No 332
>PF04371 PAD_porph: Porphyromonas-type peptidyl-arginine deiminase; InterPro: IPR007466 Peptidyl-arginine deiminase (PAD) enzymes catalyse the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia. PAD from Porphyromonas gingivalis (Bacteroides gingivalis) (PPAD) appears to be evolutionarily unrelated to mammalian PAD (IPR004303 from INTERPRO), which is a metalloenzyme. PPAD is thought to belong to the same superfamily as aminotransferase and arginine deiminase, and to form an alpha/beta propeller structure. This family has previously been named PPADH (Porphyromonas peptidyl-arginine deiminase homologs) []. The predicted catalytic residues in PPAD (Q9RQJ2 from SWISSPROT) are Asp130, Asp187, His236, Asp238 and Cys351 []. These are absolutely conserved with the exception of Asp187 which is absent in two family members. PPAD is also able to catalyse the deimination of free L-arginine, but has primarily peptidyl-arginine specificity. It may have a FMN cofactor [].; PDB: 2Q3U_A 1VKP_A 3H7C_X 3H7K_A 2EWO_K 1ZBR_B 1XKN_A 2JER_B 3HVM_A 2CMU_A.
Probab=36.87 E-value=41 Score=29.42 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEecchhHH
Q psy16850 98 FHEKLEEDVARLHQKEAGLVFTSCYVA 124 (174)
Q Consensus 98 ~~~~LE~~lA~~~g~e~al~f~sGy~a 124 (174)
--.++|++|++.||.+..|.++.|...
T Consensus 167 s~~eie~~L~~~lG~~kviwL~~g~~~ 193 (329)
T PF04371_consen 167 SKAEIEAELKRYLGVEKVIWLPHGLLG 193 (329)
T ss_dssp -HHHHHHHHHHHHT-SEEEEESS-STT
T ss_pred CHHHHHHHHHHHhCCCEEEEecCCcCC
Confidence 357899999999999999999988543
No 333
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=36.70 E-value=1.6e+02 Score=28.02 Aligned_cols=46 Identities=15% Similarity=0.041 Sum_probs=36.1
Q ss_pred CchHHHHHHHHHHHHhCCCcEEEe-cchhHHHHHHHHHhcccCCCCeeE
Q psy16850 95 NSLFHEKLEEDVARLHQKEAGLVF-TSCYVANDSTLFTLGKMIPYFTEL 142 (174)
Q Consensus 95 ~~~~~~~LE~~lA~~~g~e~al~f-~sGy~aN~~~i~aL~~~~~g~~~s 142 (174)
......+.|+..|+.+|.+.+.+. +.--.+|..++.+++. +|+.+.
T Consensus 68 p~G~i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~~--~GD~VL 114 (557)
T COG1982 68 PEGPIKEAQELAARVFGADHTYFVVNGTSTANKAVINAVLT--PGDKVL 114 (557)
T ss_pred CCccHHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhhcC--CCCEEE
Confidence 567889999999999999977554 4446789999999987 555443
No 334
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=35.14 E-value=2e+02 Score=25.99 Aligned_cols=67 Identities=15% Similarity=0.057 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHhCCC--cEE-EecchhHHHHHHHHHhcccCCCCeeEE------------------------EEEEec
Q psy16850 97 LFHEKLEEDVARLHQKE--AGL-VFTSCYVANDSTLFTLGKMIPYFTELI------------------------YFYRFL 149 (174)
Q Consensus 97 ~~~~~LE~~lA~~~g~e--~al-~f~sGy~aN~~~i~aL~~~~~g~~~s~------------------------~~~~f~ 149 (174)
.++.++-+.|...++.+ +++ +-+||-.+-=+.+..|+. ||.+..+ ...+=.
T Consensus 38 ~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~--pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~ 115 (383)
T COG0075 38 GIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVE--PGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGE 115 (383)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccC--CCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCC
Confidence 57777777788888765 443 447777777777777765 5555441 111224
Q ss_pred CCCHHHHHHHHHHhcc
Q psy16850 150 ANTTDIIKEASKELQE 165 (174)
Q Consensus 150 HNd~~~Le~~L~~~~~ 165 (174)
=-|++++|+.|++..+
T Consensus 116 ~v~p~~v~~~L~~~~~ 131 (383)
T COG0075 116 AVDPEEVEEALDKDPD 131 (383)
T ss_pred CCCHHHHHHHHhcCCC
Confidence 4577888888775443
No 335
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=35.02 E-value=68 Score=28.71 Aligned_cols=48 Identities=29% Similarity=0.246 Sum_probs=37.0
Q ss_pred cCCchH-HHHHHHHHHHHhCCCcEEE---ecchhHHHHHHHHHhcccCCCCeeE
Q psy16850 93 SGNSLF-HEKLEEDVARLHQKEAGLV---FTSCYVANDSTLFTLGKMIPYFTEL 142 (174)
Q Consensus 93 ~G~~~~-~~~LE~~lA~~~g~e~al~---f~sGy~aN~~~i~aL~~~~~g~~~s 142 (174)
+|+.++ .+.||+-.|+.||.|+|++ |-||..|-..++-.+.. ||+.+.
T Consensus 60 YGydD~GRdtLe~vyA~vf~aE~a~VRpq~isGTHAI~~aLfg~LR--pgDell 111 (416)
T COG4100 60 YGYDDLGRDTLERVYAQVFGAEAALVRPQIISGTHAIACALFGILR--PGDELL 111 (416)
T ss_pred CCccccchhHHHHHHHHHhccccceeeeeeecchhHHHHHHHhccC--CCCeEE
Confidence 455554 4569999999999999987 77999998777766644 777665
No 336
>PRK14588 tRNA pseudouridine synthase ACD; Provisional
Probab=34.84 E-value=1.3e+02 Score=25.52 Aligned_cols=61 Identities=11% Similarity=-0.015 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeEEEEEEec---CCCHHHHHHHHHHhccccccc
Q psy16850 97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTELIYFYRFL---ANTTDIIKEASKELQEDMIDL 170 (174)
Q Consensus 97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s~~~~~f~---HNd~~~Le~~L~~~~~~~~~~ 170 (174)
++..+||+.|.++.+.+-.++.++=. ..|+|....+..|. .-+++.|...|.+.=|..|++
T Consensus 26 TVq~~Le~aL~~l~~~~i~i~~AgRT-------------DaGVHA~gQv~~f~~~~~~~~~~l~~~LN~~LP~dI~V 89 (272)
T PRK14588 26 TVQGALEAAWQALTQERRRIVLAGRT-------------DAGVHARGQVAHVQTDTRHSLATIWRGLNAHLPEDIGV 89 (272)
T ss_pred CHHHHHHHHHHHhhCCCceEEEecCC-------------CcCcCccccEEEEEcCCCCCHHHHHHHHHhcCCCCeEE
Confidence 57889999999987644233222211 45666664444443 336778888887777766665
No 337
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=34.61 E-value=30 Score=21.24 Aligned_cols=24 Identities=8% Similarity=0.185 Sum_probs=20.7
Q ss_pred EEecCCCHHHHHHHHHHhcccccc
Q psy16850 146 YRFLANTTDIIKEASKELQEDMID 169 (174)
Q Consensus 146 ~~f~HNd~~~Le~~L~~~~~~~~~ 169 (174)
+.|+|-....||.+|+.+..+.++
T Consensus 10 rvFP~~kr~~Le~iL~~C~GDvv~ 33 (39)
T PF03474_consen 10 RVFPHQKRSVLELILQRCNGDVVQ 33 (39)
T ss_pred HHCCCCChHHHHHHHHHcCCcHHH
Confidence 579999999999999999886553
No 338
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=33.64 E-value=2.2e+02 Score=24.34 Aligned_cols=71 Identities=13% Similarity=0.030 Sum_probs=42.9
Q ss_pred eeEEEeccC-cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc-EEEecchhHHHH-HH
Q psy16850 52 KEVTVYCSN-DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA-GLVFTSCYVAND-ST 128 (174)
Q Consensus 52 ~~~inf~Sn-dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~-al~f~sGy~aN~-~~ 128 (174)
..+|+|+.| |= +...|.+++++.+++... ..++... ..+|-+.||+|++.+. -|+.++|-.--+ .+
T Consensus 22 ~~~i~l~~~~n~--~~~~~~~~~a~~~~~~~~--------~~Y~~~~-~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~ 90 (360)
T PRK07392 22 DAILDFSASINP--LGPPESVIAAIQSALSAL--------RHYPDPD-YRELRLALAQHHQLPPEWILPGNGAAELLTWA 90 (360)
T ss_pred ccEEEeCCcCCC--CCCCHHHHHHHHHHHHHh--------hcCCCcC-HHHHHHHHHHHhCcChhhEEECCCHHHHHHHH
Confidence 357999976 33 445688888888776531 1122222 4689999999996443 255666555444 34
Q ss_pred HHHhc
Q psy16850 129 LFTLG 133 (174)
Q Consensus 129 i~aL~ 133 (174)
+.++.
T Consensus 91 ~~~l~ 95 (360)
T PRK07392 91 GRELA 95 (360)
T ss_pred HHHhC
Confidence 44443
No 339
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=32.81 E-value=88 Score=27.20 Aligned_cols=76 Identities=18% Similarity=0.105 Sum_probs=50.2
Q ss_pred ccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccC--CCCeeEEEEEEecCCCHHHHHHHHHHhcccc
Q psy16850 90 RNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMI--PYFTELIYFYRFLANTTDIIKEASKELQEDM 167 (174)
Q Consensus 90 r~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~--~g~~~s~~~~~f~HNd~~~Le~~L~~~~~~~ 167 (174)
+.+.|.. ...+|-++++++ | .+++.+.......+++.-+...+ .++........=.|.+.+++++.+....+..
T Consensus 3 ~i~~G~g-~l~~l~~~l~~~-g--r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 78 (366)
T PF00465_consen 3 KIIFGRG-ALEELGEELKRL-G--RVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFG 78 (366)
T ss_dssp EEEESTT-GGGGHHHHHHCT-T--EEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTT
T ss_pred cEEEccC-HHHHHHHHHHhc-C--CEEEEECchHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcC
Confidence 3445544 367777788888 6 78888887776666666655432 4444443333456999999999999888766
Q ss_pred cc
Q psy16850 168 ID 169 (174)
Q Consensus 168 ~~ 169 (174)
+|
T Consensus 79 ~D 80 (366)
T PF00465_consen 79 AD 80 (366)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 340
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.59 E-value=1.6e+02 Score=25.24 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=12.2
Q ss_pred CCHHHHHHHHHHhcccccccCC
Q psy16850 151 NTTDIIKEASKELQEDMIDLTP 172 (174)
Q Consensus 151 Nd~~~Le~~L~~~~~~~~~~~~ 172 (174)
|..+-|++-+.+++...|.+-|
T Consensus 218 ~Tv~vl~~~~~~l~~~gIelV~ 239 (250)
T COG2861 218 NTVAVLQQWLDELPARGIELVP 239 (250)
T ss_pred hHHHHHHHHHHhCCCCCeEEec
Confidence 4455566666666655555443
No 341
>PRK02769 histidine decarboxylase; Provisional
Probab=32.54 E-value=1.7e+02 Score=25.96 Aligned_cols=35 Identities=14% Similarity=0.068 Sum_probs=22.7
Q ss_pred chHHHHHHHHHHHHhCCC--c--EEEecchhHHHHHHHH
Q psy16850 96 SLFHEKLEEDVARLHQKE--A--GLVFTSCYVANDSTLF 130 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e--~--al~f~sGy~aN~~~i~ 130 (174)
..+-+++=+.+|+++|.+ + .++.+.|..+|+-.+.
T Consensus 64 ~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~ 102 (380)
T PRK02769 64 FDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCY 102 (380)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHH
Confidence 445555556678999864 2 3566667899875543
No 342
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.79 E-value=95 Score=21.76 Aligned_cols=88 Identities=15% Similarity=0.098 Sum_probs=53.2
Q ss_pred CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE-EEEE
Q psy16850 68 HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL-IYFY 146 (174)
Q Consensus 68 ~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s-~~~~ 146 (174)
++.......+.++++|.-.- .. |...-...-+..|.+-++..|++++.++|...-+...+- ..|+-. ..+.
T Consensus 8 ~~~~~~~~~~~~~~~G~~~~---~h-g~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk----~~akk~~ip~~ 79 (97)
T PF10087_consen 8 REDRERRYKRILEKYGGKLI---HH-GRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVK----KAAKKYGIPII 79 (97)
T ss_pred CcccHHHHHHHHHHcCCEEE---EE-ecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHH----HHHHHcCCcEE
Confidence 34556667777888774211 11 222333444555666667889999999998877665543 122222 3344
Q ss_pred EecCCCHHHHHHHHHHh
Q psy16850 147 RFLANTTDIIKEASKEL 163 (174)
Q Consensus 147 ~f~HNd~~~Le~~L~~~ 163 (174)
..+=..+..|++.|++.
T Consensus 80 ~~~~~~~~~l~~~l~~~ 96 (97)
T PF10087_consen 80 YSRSRGVSSLERALERL 96 (97)
T ss_pred EECCCCHHHHHHHHHhh
Confidence 44338899999988764
No 343
>COG3077 RelB DNA-damage-inducible protein J [DNA replication, recombination, and repair]
Probab=30.60 E-value=1.2e+02 Score=21.81 Aligned_cols=65 Identities=23% Similarity=0.187 Sum_probs=52.3
Q ss_pred eccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcc
Q psy16850 57 YCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGK 134 (174)
Q Consensus 57 f~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~ 134 (174)
+++|-++.+--+.++++++.+.++++|.-.+ +..+-+=.++|+--+-|-=+..++ |.-+++++-.
T Consensus 1 m~~n~~l~~RiD~~vK~eA~~Vl~~mGlt~S---------~airm~L~~va~~~~lPfdl~~p~----N~~tl~ai~e 65 (88)
T COG3077 1 MAANASLNARIDDEVKEEATAVLEEMGLTIS---------DAIRMFLTKVAREGALPFDLRLPS----NAETLQAIKE 65 (88)
T ss_pred CCccchhhheecHHHHHHHHHHHHHhCCCHH---------HHHHHHHHHHHHcCCCCccccCcc----cHHHHHHHHH
Confidence 3678889999999999999999999996532 556666777888777777777777 9999998854
No 344
>PLN02932 3-ketoacyl-CoA synthase
Probab=30.32 E-value=1.3e+02 Score=27.99 Aligned_cols=63 Identities=19% Similarity=0.213 Sum_probs=37.9
Q ss_pred ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHH--HhCCCc--EEEecchhHHHHHHHHHhcc
Q psy16850 62 YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVAR--LHQKEA--GLVFTSCYVANDSTLFTLGK 134 (174)
Q Consensus 62 YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~--~~g~e~--al~f~sGy~aN~~~i~aL~~ 134 (174)
-|||+. +-.+.....+++||--|++|-.+ ....+| ++ ....+. -+-|++||..|..++.++-.
T Consensus 390 ~LgL~~--~~~e~s~~tL~rfGNTSSaSI~~-----~L~~~e---a~grik~Gd~vl~iaFGsGf~~~s~vw~~~~~ 456 (478)
T PLN02932 390 NLHLTP--LDVEASRMTLHRFGNTSSSSIWY-----ELAYTE---AKGRMKKGDRIWQIALGSGFKCNSSVWVALRN 456 (478)
T ss_pred HcCCCh--HHHHHHHHHHHHhCChhhhHHHH-----HHHHHH---HcCCCCCCCEEEEEEEeccHHHHHHHHHHhcC
Confidence 456642 23555566788999555444321 123333 32 112232 46799999999999999965
No 345
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=29.19 E-value=1.9e+02 Score=20.54 Aligned_cols=59 Identities=8% Similarity=-0.016 Sum_probs=38.3
Q ss_pred cCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeEEEEE--------EecCCCHHHHHHHHHHhc
Q psy16850 93 SGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTELIYFY--------RFLANTTDIIKEASKELQ 164 (174)
Q Consensus 93 ~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s~~~~--------~f~HNd~~~Le~~L~~~~ 164 (174)
.| ..++++|+++|.+.= .+..-++.+|- +.+|+....++ +|.+=++++++.++++.-
T Consensus 19 ~g-~~l~~~l~~~l~~~~-~~~v~v~~~~c-------------lG~c~~gp~vvvyP~~~g~wy~~v~p~~v~~Iv~~hl 83 (97)
T cd03062 19 CG-PPLAAELRAELPEHG-PGGVRVWEVSH-------------VGGHKFAGNVIIYPKGDGIWYGRVTPEHVPPIVDRLI 83 (97)
T ss_pred cC-HHHHHHHHHHHHHhC-CCceEEEeCCc-------------CCccCcCCEEEEEeCCCeeEEeecCHHHHHHHHHHHh
Confidence 35 478889998888653 33444555531 14555554444 455899999999998866
Q ss_pred cc
Q psy16850 165 ED 166 (174)
Q Consensus 165 ~~ 166 (174)
..
T Consensus 84 ~~ 85 (97)
T cd03062 84 LG 85 (97)
T ss_pred cC
Confidence 53
No 346
>PRK08636 aspartate aminotransferase; Provisional
Probab=28.53 E-value=4e+02 Score=23.20 Aligned_cols=77 Identities=10% Similarity=-0.030 Sum_probs=38.4
Q ss_pred CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----CC----CcEEEecch-
Q psy16850 51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----QK----EAGLVFTSC- 121 (174)
Q Consensus 51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g~----e~al~f~sG- 121 (174)
+..+++|++++ ......+.+.+++.+.+..-. -+-++...-..+|.+.+|+|+ |. +.-|++++|
T Consensus 32 ~~~~~~l~~g~-p~~~~~~~~~~~~~~~~~~~~------~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~ 104 (403)
T PRK08636 32 GEDIIDFSMGN-PDGPTPQHIIDKLCESAQKPK------THGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGS 104 (403)
T ss_pred CCCEEEcCCcC-CCCCCCHHHHHHHHHHhcCCc------cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCCh
Confidence 34578887764 223223445666655443210 111222222445666666665 52 223556666
Q ss_pred hHHHHHHHHHhcc
Q psy16850 122 YVANDSTLFTLGK 134 (174)
Q Consensus 122 y~aN~~~i~aL~~ 134 (174)
-++-..++.+|++
T Consensus 105 ~~al~~~~~~l~~ 117 (403)
T PRK08636 105 KEGYVHLVQAITN 117 (403)
T ss_pred HHHHHHHHHHhCC
Confidence 4454566677765
No 347
>PRK10344 DNA-binding transcriptional regulator Nlp; Provisional
Probab=28.42 E-value=27 Score=25.40 Aligned_cols=28 Identities=21% Similarity=0.110 Sum_probs=24.5
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhH
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYV 123 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~ 123 (174)
...+-.-|+.||+.+|.+...+.+|=|.
T Consensus 43 ~rp~PKgEriIA~aLGv~P~eIWPsRY~ 70 (92)
T PRK10344 43 SRPWPKGEMIIAKALGTDPWVIWPSRYH 70 (92)
T ss_pred cCCCchHHHHHHHHHCcCHHHhCccccc
Confidence 3456788999999999999999999986
No 348
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=27.79 E-value=4.2e+02 Score=23.98 Aligned_cols=120 Identities=16% Similarity=0.094 Sum_probs=68.4
Q ss_pred eeEEEeccCcccCCC--CCccchHHHHHHHHHcCCCc-cccccccCCchHHHHHHHHHHHHhCC---CcEEEecchhHHH
Q psy16850 52 KEVTVYCSNDYLGMS--CHPKVKSAVREALEKFGTGA-GGTRNISGNSLFHEKLEEDVARLHQK---EAGLVFTSCYVAN 125 (174)
Q Consensus 52 ~~~inf~SndYLGL~--~~p~v~~a~~~al~~~G~gs-~~Sr~~~G~~~~~~~LE~~lA~~~g~---e~al~f~sGy~aN 125 (174)
...++|+.+. .-.. ....+.++..+.++.++... -......|...+-+.+-+.++...|. ++=|+.++|.+..
T Consensus 89 ~~~i~f~~g~-p~~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~a 167 (459)
T COG1167 89 PSVIDFAGGL-PDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQA 167 (459)
T ss_pred CceecCCCCC-CCcccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHH
Confidence 6788888875 2222 23356666666666665442 22222244445555555555433342 2247777777766
Q ss_pred HHHHHHhcccCCCCeeEE-----------------EEEEe----cCCCHHHHHHHHHHhcccccccCCC
Q psy16850 126 DSTLFTLGKMIPYFTELI-----------------YFYRF----LANTTDIIKEASKELQEDMIDLTPK 173 (174)
Q Consensus 126 ~~~i~aL~~~~~g~~~s~-----------------~~~~f----~HNd~~~Le~~L~~~~~~~~~~~~~ 173 (174)
+-++..+.-. ||+...+ ++... .=-|+|.||..+++..+..+=+||.
T Consensus 168 l~l~~~~l~~-pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~ 235 (459)
T COG1167 168 LDLLLRLLLD-PGDTVLVEDPTYPGALQALEALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPT 235 (459)
T ss_pred HHHHHHHhCC-CCCEEEEcCCCcHHHHHHHHHcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCC
Confidence 6655544322 6665542 22222 2347999999999998888888874
No 349
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=27.73 E-value=1.6e+02 Score=26.21 Aligned_cols=66 Identities=14% Similarity=0.089 Sum_probs=43.5
Q ss_pred CccchHHHHHHHHHcCCCccccccccCC-----chHHHHHHHHHHHHhCCCc---EEEecc-hhHHHHHHHHHhcc
Q psy16850 68 HPKVKSAVREALEKFGTGAGGTRNISGN-----SLFHEKLEEDVARLHQKEA---GLVFTS-CYVANDSTLFTLGK 134 (174)
Q Consensus 68 ~p~v~~a~~~al~~~G~gs~~Sr~~~G~-----~~~~~~LE~~lA~~~g~e~---al~f~s-Gy~aN~~~i~aL~~ 134 (174)
.++|.+++++.+..|.. +|.|-+-.++ ..++.+.|+.|.++++.++ .++++. |..+--+++.-|.+
T Consensus 16 p~~Vl~~~~~~~~~~~~-~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nll~ 90 (364)
T PRK12462 16 PDTVLEQVRQAVVELPE-TGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNFSR 90 (364)
T ss_pred CHHHHHHHHHHHhcccc-cCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHcCC
Confidence 56788888888776642 2223333322 3678999999999999744 555544 66666667767754
No 350
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=27.07 E-value=2.1e+02 Score=24.62 Aligned_cols=77 Identities=16% Similarity=0.128 Sum_probs=46.2
Q ss_pred ccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeEEEEEEecCCCHHHHHHHHHHhcccccc
Q psy16850 90 RNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTELIYFYRFLANTTDIIKEASKELQEDMID 169 (174)
Q Consensus 90 r~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s~~~~~f~HNd~~~Le~~L~~~~~~~~~ 169 (174)
+.+.|.. ..+++.+.++++ |...+++.+.....+. ++..+...+...........-.|++.+.+++..+...+..+|
T Consensus 3 ~i~~G~g-~l~~l~~~l~~~-g~~~~livt~~~~~~~-~~~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d 79 (337)
T cd08177 3 RVVFGPG-ALAALAAELERL-GASRALVLTTPSLATK-LAERVASALGDRVAGTFDGAVMHTPVEVTEAAVAAAREAGAD 79 (337)
T ss_pred eEEECCC-HHHHHHHHHHHc-CCCeEEEEcChHHHHH-HHHHHHHHhccCCcEEeCCCCCCCCHHHHHHHHHHHHhcCCC
Confidence 3445543 456777777776 5457777777766665 555444333222111222233588999999998887766554
No 351
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=26.56 E-value=2.5e+02 Score=25.19 Aligned_cols=106 Identities=11% Similarity=0.067 Sum_probs=54.4
Q ss_pred CCCCccchHHHHHHHHHcC------CCccccccccCC-chHHHHHHHHHHHHhCCCcEEEecchh--------HH-HHHH
Q psy16850 65 MSCHPKVKSAVREALEKFG------TGAGGTRNISGN-SLFHEKLEEDVARLHQKEAGLVFTSCY--------VA-NDST 128 (174)
Q Consensus 65 L~~~p~v~~a~~~al~~~G------~gs~~Sr~~~G~-~~~~~~LE~~lA~~~g~e~al~f~sGy--------~a-N~~~ 128 (174)
|.....++++..++.++|. .++|.|-++.-. ..+..++|++.-+..+.+-.-+-+-|| .+ .-++
T Consensus 63 fGg~~~L~~~i~~~~~~~~p~~I~V~ttc~~eiIGdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~~~~G~~~a~~al 142 (417)
T cd01966 63 LGGGENLEEALDTLAERAKPKVIGLLSTGLTETRGEDIAGALKQFRAEHPELADVPVVYVSTPDFEGSLEDGWAAAVEAI 142 (417)
T ss_pred ECCHHHHHHHHHHHHHhcCCCEEEEECCCcccccccCHHHHHHHHHhhccccCCCeEEEecCCCCCCcHHHHHHHHHHHH
Confidence 3456789999999988875 356666655433 233344554433223444222223343 33 2245
Q ss_pred HHHhcccCC---CCeeEEEEEE---ecCCCHHHHHHHHHHhccccccc
Q psy16850 129 LFTLGKMIP---YFTELIYFYR---FLANTTDIIKEASKELQEDMIDL 170 (174)
Q Consensus 129 i~aL~~~~~---g~~~s~~~~~---f~HNd~~~Le~~L~~~~~~~~~~ 170 (174)
+..|..... ...-.+.+.- ....|++.|+++|++.+=+.+-+
T Consensus 143 ~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~~l 190 (417)
T cd01966 143 IEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPIIL 190 (417)
T ss_pred HHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceEEe
Confidence 545543211 2222355442 11347777888887776554443
No 352
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=26.35 E-value=51 Score=23.37 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=34.9
Q ss_pred eEEEeccCcccCCCCCccchHHHHHHHHHcCC----CccccccccCCchHHHHHHHHHHHHhCC
Q psy16850 53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGT----GAGGTRNISGNSLFHEKLEEDVARLHQK 112 (174)
Q Consensus 53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~----gs~~Sr~~~G~~~~~~~LE~~lA~~~g~ 112 (174)
.+|+|+. .....+++.+.+.+|.+++|+ +.+- ...+.+++.+...+||..
T Consensus 2 PvIDls~----~~~~~~~~~~~l~~A~~~~GFf~l~nhGi------~~~l~~~~~~~~~~fF~l 55 (116)
T PF14226_consen 2 PVIDLSP----DPADREEVAEQLRDACEEWGFFYLVNHGI------PQELIDRVFAAAREFFAL 55 (116)
T ss_dssp -EEEHGG----CHHHHHHHHHHHHHHHHHTSEEEEESSSS------SHHHHHHHHHHHHHHHCS
T ss_pred CeEECCC----CCccHHHHHHHHHHHHHhCCEEEEecccc------cchhhHHHHHHHHHHHHh
Confidence 3677777 224467788899999999994 3321 136788888888888863
No 353
>PRK05367 glycine dehydrogenase; Provisional
Probab=26.29 E-value=75 Score=32.05 Aligned_cols=43 Identities=14% Similarity=0.119 Sum_probs=32.7
Q ss_pred cccCCchHHHHHHHHHHHHhCCCcEEEec-chhHHHHHHHHHhc
Q psy16850 91 NISGNSLFHEKLEEDVARLHQKEAGLVFT-SCYVANDSTLFTLG 133 (174)
Q Consensus 91 ~~~G~~~~~~~LE~~lA~~~g~e~al~f~-sGy~aN~~~i~aL~ 133 (174)
...|...+..++++.|++++|.+.+-+.+ +|-++|.+.+-++.
T Consensus 536 ~~qG~l~~i~e~q~~l~eltG~d~~sl~~~~ga~ge~agL~a~r 579 (954)
T PRK05367 536 QAAGYRELIDQLEAWLAEITGYDAVSLQPNAGAQGEYAGLLAIR 579 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEECccHHHHHHHHHHHHHH
Confidence 34578889999999999999998876665 67777855554443
No 354
>KOG0143|consensus
Probab=25.46 E-value=1.2e+02 Score=26.47 Aligned_cols=72 Identities=17% Similarity=0.021 Sum_probs=50.0
Q ss_pred eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCcccccccc--CCchHHHHHHHHHHHHhCCCc-------EEE-ecch
Q psy16850 52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNIS--GNSLFHEKLEEDVARLHQKEA-------GLV-FTSC 121 (174)
Q Consensus 52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~--G~~~~~~~LE~~lA~~~g~e~-------al~-f~sG 121 (174)
-++|+|+..+-.-- ...++++.+.+|.++||+= .+++ =..++.+++++...+||.-+. .-. -..|
T Consensus 18 iPvIDls~~~~~~~-~~~~~~~~i~~Ace~wGfF----qviNHGI~~~l~~~~~~~~~~fF~lP~eeK~k~~~~~~~~~g 92 (322)
T KOG0143|consen 18 IPVIDLSCLDSDDP-GREEVVEKLREACEEWGFF----QVINHGISLELLDKVKEASKEFFELPLEEKLKVASEPGKYRG 92 (322)
T ss_pred cCeEECCCCCCcch-hHHHHHHHHHHHHHHCCee----EEEcCCCCHHHHHHHHHHHHHHhcCCHHHHHhhccCCCCccc
Confidence 36899986654433 6788899999999999953 1111 236788999999999997431 111 4589
Q ss_pred hHHHHHH
Q psy16850 122 YVANDST 128 (174)
Q Consensus 122 y~aN~~~ 128 (174)
|.++...
T Consensus 93 Y~~~~~~ 99 (322)
T KOG0143|consen 93 YGTSFIL 99 (322)
T ss_pred ccccccc
Confidence 9887765
No 355
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=25.46 E-value=2.5e+02 Score=24.24 Aligned_cols=75 Identities=16% Similarity=0.138 Sum_probs=46.4
Q ss_pred ccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCC--CCeeEEEEEEecCCCHHHHHHHHHHhcccc
Q psy16850 90 RNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIP--YFTELIYFYRFLANTTDIIKEASKELQEDM 167 (174)
Q Consensus 90 r~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~--g~~~s~~~~~f~HNd~~~Le~~L~~~~~~~ 167 (174)
+.+.|.- ...+|-+.+.++ | ..+++.+.+...+ +++.-+...+. |+... ....-.+++.+++++.++...+..
T Consensus 3 ~i~~G~g-~~~~l~~~~~~~-~-~r~livt~~~~~~-~~~~~v~~~L~~~~i~~~-~~~~~~~p~~~~v~~~~~~~~~~~ 77 (351)
T cd08170 3 RYVQGPG-ALDELGEYLARL-G-KRALIIADEFVLD-LVGAKIEESLAAAGIDAR-FEVFGGECTRAEIERLAEIARDNG 77 (351)
T ss_pred cEEECCC-HHHHHHHHHHHh-C-CeEEEEECHHHHH-HHHHHHHHHHHhCCCeEE-EEEeCCcCCHHHHHHHHHHHhhcC
Confidence 3444543 346787788877 6 5677777666666 66665544322 33322 222346788888888888877765
Q ss_pred cc
Q psy16850 168 ID 169 (174)
Q Consensus 168 ~~ 169 (174)
+|
T Consensus 78 ~D 79 (351)
T cd08170 78 AD 79 (351)
T ss_pred CC
Confidence 55
No 356
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=25.08 E-value=1.4e+02 Score=26.05 Aligned_cols=39 Identities=15% Similarity=0.027 Sum_probs=30.9
Q ss_pred chHHHHHHHHHHHHhCCC---cEEEec-chhHHHHHHHHHhcc
Q psy16850 96 SLFHEKLEEDVARLHQKE---AGLVFT-SCYVANDSTLFTLGK 134 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e---~al~f~-sGy~aN~~~i~aL~~ 134 (174)
..++++..+.|++++|.+ .+++++ ||..+.-+++..|.+
T Consensus 47 ~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~~ 89 (378)
T PRK03080 47 KALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLLG 89 (378)
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcCC
Confidence 478899999999999963 366665 898888888888753
No 357
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=24.95 E-value=3.4e+02 Score=21.20 Aligned_cols=62 Identities=23% Similarity=0.205 Sum_probs=35.6
Q ss_pred chHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC---CCcEEEecchhHHHHHHHHHhcc
Q psy16850 71 VKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ---KEAGLVFTSCYVANDSTLFTLGK 134 (174)
Q Consensus 71 v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g---~e~al~f~sGy~aN~~~i~aL~~ 134 (174)
-.+++.++++++|..........|... ...-++.+.+|+. ..+|+++.+...| .+++.++.+
T Consensus 138 R~~gf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ai~~~~d~~a-~g~~~al~~ 202 (268)
T cd06271 138 RRAGYRRALAEAGLPLDPALIVSGDMT-EEGGYAAAAELLALPDRPTAIVCSSELMA-LGVLAALAE 202 (268)
T ss_pred HHHHHHHHHHHhCCCCCCceEEeCCCC-hHHHHHHHHHHHhCCCCCCEEEEcCcHHH-HHHHHHHHH
Confidence 356677777777754322122233322 2333444555543 3678888887776 688888765
No 358
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=24.94 E-value=2.4e+02 Score=24.46 Aligned_cols=74 Identities=12% Similarity=0.096 Sum_probs=41.9
Q ss_pred ccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccC--CCCeeEEEEEEec-CCCHHHHHHHHHHhccc
Q psy16850 90 RNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMI--PYFTELIYFYRFL-ANTTDIIKEASKELQED 166 (174)
Q Consensus 90 r~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~--~g~~~s~~~~~f~-HNd~~~Le~~L~~~~~~ 166 (174)
+.+.|.- ...+|.+.+.++ | ..+++.+.+.... ....-+...+ .|+. ..+..|. +.+.+.+++.++...+.
T Consensus 3 ~i~~G~g-~~~~l~~~~~~~-g-~~~liv~~~~~~~-~~~~~v~~~l~~~~i~--~~~~~~~~~p~~~~v~~~~~~~~~~ 76 (349)
T cd08550 3 RYVCGDN-AIKEIAAILSTF-G-SKVAVVGGKTVLK-KSRPRFEAALAKSIIV--VDVIVFGGECSTEEVVKALCGAEEQ 76 (349)
T ss_pred eEEECcC-HHHHHHHHHHHc-C-CeEEEEEChHHHH-HHHHHHHHHHHhcCCe--eEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4455543 457788877764 6 5677777665544 3333332211 1222 2333454 34888888888887776
Q ss_pred ccc
Q psy16850 167 MID 169 (174)
Q Consensus 167 ~~~ 169 (174)
.+|
T Consensus 77 ~~d 79 (349)
T cd08550 77 EAD 79 (349)
T ss_pred CCC
Confidence 555
No 359
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.62 E-value=3.5e+02 Score=21.32 Aligned_cols=62 Identities=16% Similarity=0.061 Sum_probs=36.0
Q ss_pred chHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC-CcEEEecchhHHHHHHHHHhcc
Q psy16850 71 VKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK-EAGLVFTSCYVANDSTLFTLGK 134 (174)
Q Consensus 71 v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~-e~al~f~sGy~aN~~~i~aL~~ 134 (174)
-.+++.++++++|........+.+... ....++.+.+++.. .+||++++... .++++.+|..
T Consensus 140 R~~gf~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~~ai~~~~d~~-a~g~~~~l~~ 202 (273)
T cd06292 140 KIAGFRAALEEAGLEPPEALVARGMFS-VEGGQAAAVELLGSGPTAIVAASDLM-ALGAIRAARR 202 (273)
T ss_pred HHHHHHHHHHHcCCCCChhheEeCCCC-HHHHHHHHHHHhcCCCCEEEEcCcHH-HHHHHHHHHH
Confidence 356777788888753322333333333 33445555666543 57777776555 5678888754
No 360
>KOG1404|consensus
Probab=24.58 E-value=1.4e+02 Score=27.48 Aligned_cols=77 Identities=19% Similarity=0.116 Sum_probs=46.5
Q ss_pred CCeeEEEecc-CcccCCCC-CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC-CcEEEecchhHHHH
Q psy16850 50 SEKEVTVYCS-NDYLGMSC-HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK-EAGLVFTSCYVAND 126 (174)
Q Consensus 50 ~g~~~inf~S-ndYLGL~~-~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~-e~al~f~sGy~aN~ 126 (174)
+|+++++|-+ -=---+.+ ||+|.+++.+-+.+.- .+++ ..-+.++++=.|+.++.|=+. ..+.+.+||-.||=
T Consensus 48 ~G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~l~-H~t~---~~~~~pi~~~Ae~L~s~~P~~l~~vfF~nsGsEANe 123 (442)
T KOG1404|consen 48 EGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKLY-HTTS---GYLNPPIHDLAEALVSKLPGDLKVVFFVNSGSEANE 123 (442)
T ss_pred CCceeehhhCCeEEEEcCCCChHHHHHHHHhhhhhE-Eeec---cccCCcHHHHHHHHHHhCCCCceEEEEecCCchHHH
Confidence 4666665432 11112333 9999999998775533 1111 122566666666666666553 34667799999998
Q ss_pred HHHH
Q psy16850 127 STLF 130 (174)
Q Consensus 127 ~~i~ 130 (174)
..+.
T Consensus 124 lal~ 127 (442)
T KOG1404|consen 124 LALK 127 (442)
T ss_pred HHHH
Confidence 7765
No 361
>PLN02263 serine decarboxylase
Probab=24.23 E-value=3.3e+02 Score=25.29 Aligned_cols=53 Identities=21% Similarity=0.189 Sum_probs=31.9
Q ss_pred HHcCCCccccccccCC-----chHHHHHHHHHHHHhCCCc----EEEecchhHHHHHHHHHh
Q psy16850 80 EKFGTGAGGTRNISGN-----SLFHEKLEEDVARLHQKEA----GLVFTSCYVANDSTLFTL 132 (174)
Q Consensus 80 ~~~G~gs~~Sr~~~G~-----~~~~~~LE~~lA~~~g~e~----al~f~sGy~aN~~~i~aL 132 (174)
..++.+..|=..+.++ ..+-+++=+.+|+++|.+. ..+.+.|..+|+..+-+-
T Consensus 111 l~~~~nN~Gdp~~~s~~~~~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aA 172 (470)
T PLN02263 111 QHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVG 172 (470)
T ss_pred HHhhccCCCCccccCCcchhHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHH
Confidence 3455554444444443 3344444455666677642 688899999999877653
No 362
>PRK00074 guaA GMP synthase; Reviewed
Probab=24.20 E-value=2.3e+02 Score=26.34 Aligned_cols=82 Identities=16% Similarity=0.114 Sum_probs=45.5
Q ss_pred cCcccCCCCCccchH--HHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEE-ecchhHHHHHHHHHhccc
Q psy16850 59 SNDYLGMSCHPKVKS--AVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLV-FTSCYVANDSTLFTLGKM 135 (174)
Q Consensus 59 SndYLGL~~~p~v~~--a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~-f~sGy~aN~~~i~aL~~~ 135 (174)
++..+|+..|||+.. .-.+.++.|-..-|+...--......++..+.|.+.++.+.+++ ||-|-.. +++..++..
T Consensus 160 ~~~i~GvQFHPE~~~t~~G~~il~nFl~~i~~~~~~~~~~~~~~~~~~~l~~~v~~~~vlva~SGGvDS--~vll~ll~~ 237 (511)
T PRK00074 160 ERKFYGVQFHPEVTHTPQGKKLLENFVFDICGCKGDWTMENFIEEAIEEIREQVGDKKVILGLSGGVDS--SVAAVLLHK 237 (511)
T ss_pred CCCEEEEeCCCCcCCchhHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHhcCCCcEEEEeCCCccH--HHHHHHHHH
Confidence 456899999999964 34455566543333322222233466666777888887777655 5555443 333334332
Q ss_pred CCCCeeE
Q psy16850 136 IPYFTEL 142 (174)
Q Consensus 136 ~~g~~~s 142 (174)
.-|.++.
T Consensus 238 ~lg~~v~ 244 (511)
T PRK00074 238 AIGDQLT 244 (511)
T ss_pred HhCCceE
Confidence 2244444
No 363
>PRK10494 hypothetical protein; Provisional
Probab=23.44 E-value=2e+02 Score=24.22 Aligned_cols=54 Identities=11% Similarity=0.001 Sum_probs=33.3
Q ss_pred HHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHH
Q psy16850 75 VREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTL 129 (174)
Q Consensus 75 ~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i 129 (174)
+.+.+.+.|+....-....-..+.+++.. ..++.++.+..++.+|.|+.-=+..
T Consensus 142 ~~~~l~~lGVp~~~Ii~e~~s~nT~eNa~-~~~~~~~~~~iiLVTsa~Hm~RA~~ 195 (259)
T PRK10494 142 GARVAQSLGVPREDIITLDLPKDTEEEAA-AVKQAIGDAPFLLVTSASHLPRAMI 195 (259)
T ss_pred HHHHHHHcCCCHHHeeeCCCCCCHHHHHH-HHHHHhCCCCEEEECCHHHHHHHHH
Confidence 34445556655433233333344566665 3667788888999999999766554
No 364
>PLN02590 probable tyrosine decarboxylase
Probab=23.01 E-value=2e+02 Score=27.10 Aligned_cols=35 Identities=14% Similarity=0.046 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHhCCCc---------EEEecchhHHHHHHHHH
Q psy16850 97 LFHEKLEEDVARLHQKEA---------GLVFTSCYVANDSTLFT 131 (174)
Q Consensus 97 ~~~~~LE~~lA~~~g~e~---------al~f~sGy~aN~~~i~a 131 (174)
.+-+++=+.|++++|.++ .++.++|-.||+..+-+
T Consensus 170 ~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~a 213 (539)
T PLN02590 170 ELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLA 213 (539)
T ss_pred HHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHH
Confidence 344445556677777664 58889999999877654
No 365
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=22.89 E-value=1.8e+02 Score=25.13 Aligned_cols=87 Identities=13% Similarity=0.039 Sum_probs=48.7
Q ss_pred cchHHHHHHHHHcC------CCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeEE
Q psy16850 70 KVKSAVREALEKFG------TGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTELI 143 (174)
Q Consensus 70 ~v~~a~~~al~~~G------~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s~ 143 (174)
++...+.+.++..| +.--|+-..-|..+.--+|=+.|.+..|.+--|..+--.++|++-- +. ..+...+
T Consensus 82 ~l~~eil~~l~~agp~Dgv~L~LHGAmv~e~~~D~EG~Ll~rvR~~vGp~vpI~~tlDlHaNvs~~--mv---~~ad~~~ 156 (292)
T PF07364_consen 82 RLRDEILDRLRAAGPLDGVLLDLHGAMVAEGYDDGEGDLLRRVRAIVGPDVPIAATLDLHANVSPR--MV---EAADIIV 156 (292)
T ss_dssp HHHHHHHHHHHHS---SEEEEEE-S---BSS-SSHHHHHHHHHHHHHTTTSEEEEEE-TT----HH--HH---HH-SEEE
T ss_pred HHHHHHHHHHHhcCCcCEEEEeccCcEeecCCCCchHHHHHHHHHHhCCCCeEEEEeCCCCCccHH--HH---HhCCEEE
Confidence 35555566666654 2344555667788899999999999999999999999999998642 22 2344557
Q ss_pred EEEEecCCCHHHHHHHHH
Q psy16850 144 YFYRFLANTTDIIKEASK 161 (174)
Q Consensus 144 ~~~~f~HNd~~~Le~~L~ 161 (174)
-++.|+|-|+..=.....
T Consensus 157 ~yrtyPH~D~~etg~~aa 174 (292)
T PF07364_consen 157 GYRTYPHIDMYETGERAA 174 (292)
T ss_dssp E---SS---HHHHHHHHH
T ss_pred EcCCCCccCHHHHHHHHH
Confidence 789999999976444333
No 366
>KOG3785|consensus
Probab=22.76 E-value=1.5e+02 Score=27.22 Aligned_cols=98 Identities=22% Similarity=0.134 Sum_probs=64.4
Q ss_pred CccchHHHHH-HHHHcCCCc--------cccccccCCchHHHHHHH--------HHHHHhCCCcEEEecchhHHHHHHHH
Q psy16850 68 HPKVKSAVRE-ALEKFGTGA--------GGTRNISGNSLFHEKLEE--------DVARLHQKEAGLVFTSCYVANDSTLF 130 (174)
Q Consensus 68 ~p~v~~a~~~-al~~~G~gs--------~~Sr~~~G~~~~~~~LE~--------~lA~~~g~e~al~f~sGy~aN~~~i~ 130 (174)
-+.|.+.+.+ .++++|-++ --=|+++|.....+.=|- ..++.+-+..-++|-.|=.| +-|+|
T Consensus 200 Yydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgA-LqVLP 278 (557)
T KOG3785|consen 200 YYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGA-LQVLP 278 (557)
T ss_pred hhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccH-HHhch
Confidence 3445444444 455666432 223677776543322110 02223334456888888665 67999
Q ss_pred HhcccCCCCeeEEEEEEecCCCHHHHHHHHHHhccc
Q psy16850 131 TLGKMIPYFTELIYFYRFLANTTDIIKEASKELQED 166 (174)
Q Consensus 131 aL~~~~~g~~~s~~~~~f~HNd~~~Le~~L~~~~~~ 166 (174)
.|.+.+|..|+-.-+...+.||+.+--++++...|.
T Consensus 279 ~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt 314 (557)
T KOG3785|consen 279 SLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT 314 (557)
T ss_pred HHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC
Confidence 999999999999888889999999999999988874
No 367
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=22.32 E-value=71 Score=19.33 Aligned_cols=20 Identities=10% Similarity=0.052 Sum_probs=16.3
Q ss_pred cCCCHHHHHHHHHHhccccc
Q psy16850 149 LANTTDIIKEASKELQEDMI 168 (174)
Q Consensus 149 ~HNd~~~Le~~L~~~~~~~~ 168 (174)
-|-|.++|...++...|..+
T Consensus 16 gHad~~~L~~~i~~~~p~~v 35 (43)
T PF07521_consen 16 GHADREELLEFIEQLNPRKV 35 (43)
T ss_dssp SS-BHHHHHHHHHHHCSSEE
T ss_pred CCCCHHHHHHHHHhcCCCEE
Confidence 59999999999999987544
No 368
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=21.89 E-value=1.7e+02 Score=25.50 Aligned_cols=78 Identities=21% Similarity=0.138 Sum_probs=45.4
Q ss_pred ccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccC--CCCeeEEEEEEecCCCHHHHHHHHHHhcccc
Q psy16850 90 RNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMI--PYFTELIYFYRFLANTTDIIKEASKELQEDM 167 (174)
Q Consensus 90 r~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~--~g~~~s~~~~~f~HNd~~~Le~~L~~~~~~~ 167 (174)
+.+.|.. ..++|-+.+.++ |...+++.+.......+....+...+ .|......-..-.|.+.+.+++.++...+..
T Consensus 3 ~i~~G~g-~l~~l~~~l~~~-~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 80 (370)
T cd08551 3 RIIFGAG-AIEKLGEEIKNL-GGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEG 80 (370)
T ss_pred eEEECcC-HHHHHHHHHHHc-CCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcC
Confidence 4455543 357777778775 65677777766665544444333221 1222211111225899999999998887655
Q ss_pred cc
Q psy16850 168 ID 169 (174)
Q Consensus 168 ~~ 169 (174)
+|
T Consensus 81 ~d 82 (370)
T cd08551 81 CD 82 (370)
T ss_pred CC
Confidence 54
No 369
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=21.69 E-value=1.6e+02 Score=26.18 Aligned_cols=79 Identities=9% Similarity=0.056 Sum_probs=48.7
Q ss_pred cccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCC--CCeeEEEEEEecCCCHHHHHHHHHHhccc
Q psy16850 89 TRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIP--YFTELIYFYRFLANTTDIIKEASKELQED 166 (174)
Q Consensus 89 Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~--g~~~s~~~~~f~HNd~~~Le~~L~~~~~~ 166 (174)
++.+.|.- ...+|-+.+.+ +|...+++.+.++..+.+++.-+...+. |+.....-..-++...+.+++.++...+.
T Consensus 28 ~~i~fG~g-~~~~l~~~~~~-~g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~ 105 (395)
T PRK15454 28 PVTLCGPG-AVSSCGQQAQT-RGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRES 105 (395)
T ss_pred CeEEECcC-HHHHHHHHHHh-cCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhc
Confidence 45666654 45677776665 4778888888888777776665544322 32221111122367778888888877776
Q ss_pred ccc
Q psy16850 167 MID 169 (174)
Q Consensus 167 ~~~ 169 (174)
.+|
T Consensus 106 ~~D 108 (395)
T PRK15454 106 GCD 108 (395)
T ss_pred CcC
Confidence 555
No 370
>PRK12434 tRNA pseudouridine synthase A; Reviewed
Probab=21.40 E-value=2.8e+02 Score=23.05 Aligned_cols=62 Identities=15% Similarity=0.084 Sum_probs=39.3
Q ss_pred chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeEEEEEEecC---CCHHHHHHHHHHhccccccc
Q psy16850 96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTELIYFYRFLA---NTTDIIKEASKELQEDMIDL 170 (174)
Q Consensus 96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s~~~~~f~H---Nd~~~Le~~L~~~~~~~~~~ 170 (174)
.++..+||+.|.++.+. +.-+..+| --..|+|....+..|.- -+++.|...|.+.=|.-|++
T Consensus 26 ~TVq~~le~aL~~~~~~-~~~~~~ag------------RTD~GVHA~~qv~~f~~~~~~~~~~l~~~lN~~LP~dI~V 90 (245)
T PRK12434 26 NTIQGKIESVLSEMTGE-EIEIIGCG------------RTDAGVHALNQVANFQTDEKLSEDKIKKYLNEYLPNDIVV 90 (245)
T ss_pred CCHHHHHHHHHHHHhCC-CeEEEEec------------cCCCCcCccCcEEEEEcCCCCCHHHHHHHHHccCCCCeEE
Confidence 46788999999988874 33333221 11457776655555543 46778888887777766665
No 371
>PLN02994 1-aminocyclopropane-1-carboxylate synthase
Probab=21.34 E-value=2.7e+02 Score=21.53 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=29.6
Q ss_pred cCCchHHHHHHHHHHHHhC------CCcEEEecchhHHHHHHHHHhcccCCCCeeEE
Q psy16850 93 SGNSLFHEKLEEDVARLHQ------KEAGLVFTSCYVANDSTLFTLGKMIPYFTELI 143 (174)
Q Consensus 93 ~G~~~~~~~LE~~lA~~~g------~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s~ 143 (174)
.|...+.+.+-+.+.+.+| .+..++.+.+-.+...++.+|++ ||+.+.+
T Consensus 92 ~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~d--pGD~VlV 146 (153)
T PLN02994 92 HGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIAD--PGDAFLV 146 (153)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcC--CCCEEEE
Confidence 3555666666666666655 23444555555566667778876 6766553
No 372
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=20.95 E-value=4.2e+02 Score=20.85 Aligned_cols=63 Identities=16% Similarity=0.111 Sum_probs=34.7
Q ss_pred cchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC---CcEEEecchhHHHHHHHHHhcc
Q psy16850 70 KVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK---EAGLVFTSCYVANDSTLFTLGK 134 (174)
Q Consensus 70 ~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~---e~al~f~sGy~aN~~~i~aL~~ 134 (174)
.-.++++++++++|....-.-...+.. -.++.++.+.+|+.. .+|++.+++..| .+++.+|..
T Consensus 133 ~R~~gf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a-~g~~~~l~~ 198 (268)
T cd06270 133 LRLQGYRDALAEAGIALDESLIIEGDF-TEEGGYAAMQELLARGAPFTAVFCANDEMA-AGAISALRE 198 (268)
T ss_pred HHHHHHHHHHHHcCCCCCcceEEECCC-CHHHHHHHHHHHHhCCCCCCEEEEcCcHHH-HHHHHHHHH
Confidence 345667778877764321111122222 234445555666532 467777776654 778888864
No 373
>PRK07568 aspartate aminotransferase; Provisional
Probab=20.03 E-value=5.6e+02 Score=21.92 Aligned_cols=62 Identities=11% Similarity=0.136 Sum_probs=38.0
Q ss_pred cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEec-chhH
Q psy16850 61 DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFT-SCYV 123 (174)
Q Consensus 61 dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~-sGy~ 123 (174)
.|-.....+++++++.+.+..+|.+......+.+ ....+-+...+..+....+.++.+ -+|.
T Consensus 61 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t-~G~~~al~~~~~~l~~~gd~Vl~~~p~y~ 123 (397)
T PRK07568 61 AYSHSQGIPELREAFAKYYKKWGIDVEPDEILIT-NGGSEAILFAMMAICDPGDEILVPEPFYA 123 (397)
T ss_pred CcCCCCCCHHHHHHHHHHHHHhCCCCCcceEEEc-CChHHHHHHHHHHhcCCCCEEEEecCCCc
Confidence 4655556788999988888777776665555442 233455555565566554545544 4554
Done!