RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16850
(174 letters)
>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter
capsulatus [TaxId: 1061]}
Length = 396
Score = 119 bits (299), Expect = 3e-33
Identities = 59/127 (46%), Positives = 78/127 (61%), Gaps = 2/127 (1%)
Query: 11 YEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAA--YEYTDSEKEVTVYCSNDYLGMSCH 68
Y + I K + YR F + R FP A ++++TV+C NDYLGM H
Sbjct: 2 YNLALDKAIQKLHDEGRYRTFIDIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQH 61
Query: 69 PKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDST 128
P V +A+ EALE G G+GGTRNISG + +H +LE ++A LHQKEA LVF+S Y AND+T
Sbjct: 62 PVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDAT 121
Query: 129 LFTLGKM 135
L TL +
Sbjct: 122 LSTLRVL 128
>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase
(8-amino-7-oxonanoate synthase, AONS) {Escherichia coli
[TaxId: 562]}
Length = 383
Score = 101 bits (251), Expect = 2e-26
Identities = 32/129 (24%), Positives = 64/129 (49%), Gaps = 5/129 (3%)
Query: 11 YEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPK 70
+++ + + ++ + R V + A +++ + SNDYLG+S HP+
Sbjct: 2 WQEKINAALDARRAADALRRRYPVAQ-----GAGRWLVADDRQYLNFSSNDYLGLSHHPQ 56
Query: 71 VKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLF 130
+ A ++ E+FG G+GG+ ++SG S+ H+ LEE++A L+F S + AN + +
Sbjct: 57 IIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIA 116
Query: 131 TLGKMIPYF 139
+
Sbjct: 117 AMMAKEDRI 125
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
{Escherichia coli [TaxId: 562]}
Length = 401
Score = 98.7 bits (245), Expect = 1e-25
Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 6/137 (4%)
Query: 3 TTMREPFPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDY 62
+ MR F + + + ++ R+ T+ A V +C+N+Y
Sbjct: 2 SHMRGEF--YQQLTNDLETARAEGLFKEE----RIITSAQQADITVADGSHVINFCANNY 55
Query: 63 LGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCY 122
LG++ HP + +A + ++ G G R I G H++LE+ +A E ++++SC+
Sbjct: 56 LGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCF 115
Query: 123 VANDSTLFTLGKMIPYF 139
AN TL
Sbjct: 116 DANGGLFETLLGAEDAI 132
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS)
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 364
Score = 56.4 bits (134), Expect = 2e-10
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
Query: 70 KVKSAVREALEKFGTGAGGTRNISGNSL-------FHEKLEEDVARLHQKEAGLVFTSCY 122
K+ R+AL ++G G + L H+ + + + + V
Sbjct: 13 KLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAR 72
Query: 123 VANDSTLFTLGK 134
A + + +L K
Sbjct: 73 EAKFAVMHSLAK 84
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 52.5 bits (124), Expect = 3e-09
Identities = 10/112 (8%), Positives = 31/112 (27%), Gaps = 10/112 (8%)
Query: 57 YCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGL 116
+ S++ G P+V A+ + + G G +++ + +++ +
Sbjct: 7 FSSDNIAG--ASPEVAQALVKH-------SSGQAGPYGTDELTAQVKRKFCEIFERDVEV 57
Query: 117 VFT-SCYVANDSTLFTLGKMIPYFTELIYFYRFLANTTDIIKEASKELQEDM 167
+ AN L + + ++ +
Sbjct: 58 FLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTV 109
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Leishmania major [TaxId: 5664]}
Length = 340
Score = 46.1 bits (107), Expect = 5e-07
Identities = 12/69 (17%), Positives = 18/69 (26%), Gaps = 10/69 (14%)
Query: 59 SNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVF 118
NDY HPK+ + G G K + L ++ V
Sbjct: 5 VNDYSV-GMHPKILDLMARDNMTQHAGYGQDS-------HCAKAARLIGELLERPDADVH 56
Query: 119 --TSCYVAN 125
+ N
Sbjct: 57 FISGGTQTN 65
>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Thermotoga maritima [TaxId: 2336]}
Length = 343
Score = 43.6 bits (101), Expect = 4e-06
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 74 AVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLG 133
+R+A+ + G + G +LE A KEA L S + N ++
Sbjct: 15 EMRKAMAQAEVGDD----VYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHT 70
Query: 134 KM 135
+
Sbjct: 71 QR 72
>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, BioA {Escherichia coli [TaxId: 562]}
Length = 429
Score = 27.3 bits (59), Expect = 1.2
Identities = 6/45 (13%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 67 CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ 111
HP++ +A++ ++ ++ + H E +L
Sbjct: 60 NHPQLNAAMKSQIDAMS-------HVMFGGITHAPAIELCRKLVA 97
>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}
Length = 461
Score = 27.3 bits (59), Expect = 1.2
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Query: 67 CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFT--SCYVA 124
HP + V++ I F EKL E + + K + T +
Sbjct: 70 SHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCS 129
Query: 125 NDSTL 129
N++
Sbjct: 130 NENAF 134
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 27.1 bits (59), Expect = 1.4
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 67 CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ 111
HPKV +AV L+K L +E E ++Q
Sbjct: 57 LHPKVVAAVEAQLKKLSHT-------CFQVLAYEPYLELCEIMNQ 94
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 26.8 bits (58), Expect = 1.5
Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 1/55 (1%)
Query: 80 EKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGK 134
G SG+ ++ L E V + + + A + L K
Sbjct: 58 SMQAAMMRGDEAFSGSRSYY-ALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIK 111
>d1tx3a1 c.52.1.19 (A:2-258) Restriction endonuclease HincII
{Haemophilus influenzae [TaxId: 727]}
Length = 257
Score = 26.1 bits (57), Expect = 2.1
Identities = 8/43 (18%), Positives = 20/43 (46%)
Query: 10 PYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEK 52
P+E ++ + + D +++ ++ +N L PA + K
Sbjct: 35 PFEKLVYKFLKENLSDLTFKQYEYLNDLFMKNPAIIGHEARYK 77
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 25.9 bits (56), Expect = 2.7
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 67 CHPKVKSAVREALEKFGTGAGGTRNI 92
CHP + +A+ + + ++
Sbjct: 56 CHPNILNAMINQAKNLTICSRAFFSV 81
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 26.1 bits (56), Expect = 2.8
Identities = 8/64 (12%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 71 VKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLF 130
+A+ + ++ G +G+ +++ L++ L + + A +
Sbjct: 52 GTNAMSDH--QWAAMITGDEAYAGSRNYYD-LKDKAKELFNYDYIIPAHQGRGAENILFP 108
Query: 131 TLGK 134
L K
Sbjct: 109 VLLK 112
>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase
{Pseudomonas cepacia [TaxId: 292]}
Length = 431
Score = 26.2 bits (56), Expect = 2.9
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 67 CHPKVKSAVREALEKFGTGAGGTRN 91
CHP++ S + E K +
Sbjct: 58 CHPEIVSVIGEYAGKLDHLFSEMLS 82
>d3pnpa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Cow
(Bos taurus) [TaxId: 9913]}
Length = 284
Score = 25.5 bits (55), Expect = 3.5
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 8/71 (11%)
Query: 15 FHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDS-------EKEVTVYCSNDYLGMSC 67
+ + R ++ +K++ Y E + D +GMS
Sbjct: 162 MSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMST 221
Query: 68 HPKVKSAVREA 78
P+V A R
Sbjct: 222 VPEVIVA-RHC 231
>d1ufya_ d.79.1.2 (A:) Chorismate mutase {Thermus thermophilus
[TaxId: 274]}
Length = 121
Score = 24.6 bits (54), Expect = 4.8
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 150 ANTTDIIKEASKELQEDMID 169
+T + I +A++EL M++
Sbjct: 13 EDTPEAIHQATRELLLKMLE 32
>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
aminotransferase ArgD {Thermus thermophilus [TaxId:
274]}
Length = 387
Score = 25.5 bits (55), Expect = 4.8
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 67 CHPKVKSAVREALEKF 82
+P+V AV+ E
Sbjct: 54 GNPEVVEAVKRQAETL 69
>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 404
Score = 25.1 bits (54), Expect = 6.1
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 67 CHPKVKSAVREALEKFGT 84
CHPK+ +A++ ++K
Sbjct: 58 CHPKIVNALKSQVDKLTL 75
>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas
vaginalis, MGL2 [TaxId: 5722]}
Length = 331
Score = 24.8 bits (53), Expect = 7.4
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 102 LEEDVARLHQKEAGLVFTSCYVANDSTLFTL 132
LE +A+L EA S A ++++T
Sbjct: 3 LEGKIAKLEHAEACAATASGMGAIAASVWTF 33
>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
(aminotransferase) {Synechococcus sp., strain GR6
[TaxId: 1131]}
Length = 427
Score = 24.4 bits (52), Expect = 8.2
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 67 CHPKVKSAVREALEKF 82
HP+V A++ A+EK
Sbjct: 69 AHPEVIEALKVAMEKG 84
>d1xhoa_ d.79.1.2 (A:) Chorismate mutase {Clostridium thermocellum
[TaxId: 1515]}
Length = 112
Score = 23.8 bits (52), Expect = 8.5
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 150 ANTTDIIKEASKELQEDMID 169
NT D I +++L ++M +
Sbjct: 12 DNTADEIVAETQKLLKEMAE 31
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.389
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 666,331
Number of extensions: 29531
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 27
Length of query: 174
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,322,926
Effective search space: 125677970
Effective search space used: 125677970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.5 bits)