BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16851
(366 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RSC|A Chain A, Structure Of An Effector Induced Inactivated State Of
Ribulose Bisphosphate Carboxylase(Slash)oxygenase: The
Binary Complex Between Enzyme And Xylulose Bisphosphate
pdb|1RSC|B Chain B, Structure Of An Effector Induced Inactivated State Of
Ribulose Bisphosphate Carboxylase(Slash)oxygenase: The
Binary Complex Between Enzyme And Xylulose Bisphosphate
pdb|1RSC|C Chain C, Structure Of An Effector Induced Inactivated State Of
Ribulose Bisphosphate Carboxylase(Slash)oxygenase: The
Binary Complex Between Enzyme And Xylulose Bisphosphate
pdb|1RSC|D Chain D, Structure Of An Effector Induced Inactivated State Of
Ribulose Bisphosphate Carboxylase(Slash)oxygenase: The
Binary Complex Between Enzyme And Xylulose Bisphosphate
pdb|1RSC|E Chain E, Structure Of An Effector Induced Inactivated State Of
Ribulose Bisphosphate Carboxylase(Slash)oxygenase: The
Binary Complex Between Enzyme And Xylulose Bisphosphate
pdb|1RSC|F Chain F, Structure Of An Effector Induced Inactivated State Of
Ribulose Bisphosphate Carboxylase(Slash)oxygenase: The
Binary Complex Between Enzyme And Xylulose Bisphosphate
pdb|1RSC|G Chain G, Structure Of An Effector Induced Inactivated State Of
Ribulose Bisphosphate Carboxylase(Slash)oxygenase: The
Binary Complex Between Enzyme And Xylulose Bisphosphate
pdb|1RSC|H Chain H, Structure Of An Effector Induced Inactivated State Of
Ribulose Bisphosphate Carboxylase(Slash)oxygenase: The
Binary Complex Between Enzyme And Xylulose Bisphosphate
pdb|2WVW|A Chain A, Cryo-Em Structure Of The Rbcl-Rbcx Complex
pdb|2WVW|B Chain B, Cryo-Em Structure Of The Rbcl-Rbcx Complex
pdb|2WVW|C Chain C, Cryo-Em Structure Of The Rbcl-Rbcx Complex
pdb|2WVW|D Chain D, Cryo-Em Structure Of The Rbcl-Rbcx Complex
pdb|2WVW|E Chain E, Cryo-Em Structure Of The Rbcl-Rbcx Complex
pdb|2WVW|F Chain F, Cryo-Em Structure Of The Rbcl-Rbcx Complex
pdb|2WVW|G Chain G, Cryo-Em Structure Of The Rbcl-Rbcx Complex
pdb|2WVW|H Chain H, Cryo-Em Structure Of The Rbcl-Rbcx Complex
pdb|3RG6|A Chain A, Crystal Structure Of A Chaperone-Bound Assembly
Intermediate Of Form I Rubisco
pdb|3RG6|B Chain B, Crystal Structure Of A Chaperone-Bound Assembly
Intermediate Of Form I Rubisco
Length = 472
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 18/123 (14%)
Query: 215 RKSSSKYYVSPVQYSPNMFPDFTTGPAYLFTSDVVSDVYTKALETTY-------LKLEDV 267
R Y++ PVQ N + F P LF V+++ T + + L+LED+
Sbjct: 76 RYKGKCYHIEPVQGEENSYFAFIAYPLDLFEEGSVTNILTSIVGNVFGFKAIRSLRLEDI 135
Query: 268 -FTTGVV------AQSLKIKRQHVNEFFNKRIPLNACTIKKGISIHMIKYHEQ-FELWKK 319
F +V ++++R +N++ P+ CTIK + + Y +E +
Sbjct: 136 RFPVALVKTFQGPPHGIQVERDLLNKYGR---PMLGCTIKPKLGLSAKNYGRAVYECLRG 192
Query: 320 LLD 322
LD
Sbjct: 193 GLD 195
>pdb|1RBL|A Chain A, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
pdb|1RBL|B Chain B, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
pdb|1RBL|C Chain C, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
pdb|1RBL|D Chain D, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
pdb|1RBL|E Chain E, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
pdb|1RBL|F Chain F, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
pdb|1RBL|G Chain G, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
pdb|1RBL|H Chain H, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
Length = 467
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 18/123 (14%)
Query: 215 RKSSSKYYVSPVQYSPNMFPDFTTGPAYLFTSDVVSDVYTKALETTY-------LKLEDV 267
R Y++ PV N + F P LF V+++ T + + L+LED+
Sbjct: 71 RYKGKCYHIEPVAGEENSYFAFIAYPLDLFEEGSVTNILTSIVGNVFGFKAIRSLRLEDI 130
Query: 268 -FTTGVV------AQSLKIKRQHVNEFFNKRIPLNACTIKKGISIHMIKYHEQ-FELWKK 319
F +V ++++R +N++ P+ CTIK + + Y +E +
Sbjct: 131 RFPVALVKTFQGPPHGIQVERDLLNKYGR---PMLGCTIKPKLGLSAKNYGRAVYECLRG 187
Query: 320 LLD 322
LD
Sbjct: 188 GLD 190
>pdb|1AA1|L Chain L, Activated Spinach Rubisco In Complex With The Product 3-
Phosphoglycerate
pdb|1AA1|B Chain B, Activated Spinach Rubisco In Complex With The Product 3-
Phosphoglycerate
pdb|1AA1|E Chain E, Activated Spinach Rubisco In Complex With The Product 3-
Phosphoglycerate
pdb|1AA1|H Chain H, Activated Spinach Rubisco In Complex With The Product 3-
Phosphoglycerate
pdb|1RXO|L Chain L, Activated Spinach Rubisco In Complex With Its Substrate
Ribulose-1,5- Bisphosphate And Calcium
pdb|1RXO|B Chain B, Activated Spinach Rubisco In Complex With Its Substrate
Ribulose-1,5- Bisphosphate And Calcium
pdb|1RXO|E Chain E, Activated Spinach Rubisco In Complex With Its Substrate
Ribulose-1,5- Bisphosphate And Calcium
pdb|1RXO|H Chain H, Activated Spinach Rubisco In Complex With Its Substrate
Ribulose-1,5- Bisphosphate And Calcium
Length = 475
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 18/123 (14%)
Query: 215 RKSSSKYYVSPVQYSPNMFPDFTTGPAYLFTSDVVSDVYTKALETTY-------LKLED- 266
R Y++ PV N + + P LF V++++T + + L+LED
Sbjct: 79 RYKGRCYHIEPVAGEENQYICYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDL 138
Query: 267 ------VFTTGVVAQSLKIKRQHVNEFFNKRIPLNACTIKKGISIHMIKYHEQ-FELWKK 319
V T ++++R +N++ PL CTIK + + Y +E +
Sbjct: 139 RIPVAYVKTFQGPPHGIQVERDKLNKYGR---PLLGCTIKPKLGLSAKNYGRAVYECLRG 195
Query: 320 LLD 322
LD
Sbjct: 196 GLD 198
>pdb|1AUS|L Chain L, Activated Unliganded Spinach Rubisco
pdb|1RBO|L Chain L, Spinach Rubisco In Complex With The Inhibitor
2-carboxyarabinitol-1,5- Diphosphate
pdb|1RBO|B Chain B, Spinach Rubisco In Complex With The Inhibitor
2-carboxyarabinitol-1,5- Diphosphate
pdb|1RBO|E Chain E, Spinach Rubisco In Complex With The Inhibitor
2-carboxyarabinitol-1,5- Diphosphate
pdb|1RBO|H Chain H, Spinach Rubisco In Complex With The Inhibitor
2-carboxyarabinitol-1,5- Diphosphate
pdb|1RCO|L Chain L, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
pdb|1RCO|B Chain B, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
pdb|1RCO|E Chain E, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
pdb|1RCO|H Chain H, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
pdb|1RCO|K Chain K, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
pdb|1RCO|O Chain O, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
pdb|1RCO|R Chain R, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
pdb|1RCX|L Chain L, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
pdb|1RCX|B Chain B, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
pdb|1RCX|E Chain E, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
pdb|1RCX|H Chain H, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
pdb|1RCX|K Chain K, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
pdb|1RCX|O Chain O, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
pdb|1RCX|R Chain R, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
pdb|1RCX|V Chain V, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
pdb|1RCO|V Chain V, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
pdb|1AUS|M Chain M, Activated Unliganded Spinach Rubisco
pdb|1AUS|N Chain N, Activated Unliganded Spinach Rubisco
pdb|1AUS|O Chain O, Activated Unliganded Spinach Rubisco
Length = 475
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 18/123 (14%)
Query: 215 RKSSSKYYVSPVQYSPNMFPDFTTGPAYLFTSDVVSDVYTKALETTY-------LKLED- 266
R Y++ PV N + + P LF V++++T + + L+LED
Sbjct: 79 RYKGRCYHIEPVAGEENQYICYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDL 138
Query: 267 ------VFTTGVVAQSLKIKRQHVNEFFNKRIPLNACTIKKGISIHMIKYHEQ-FELWKK 319
V T ++++R +N++ PL CTIK + + Y +E +
Sbjct: 139 RIPVAYVKTFQGPPHGIQVERDKLNKYGR---PLLGCTIKPKLGLSAKNYGRAVYECLRG 195
Query: 320 LLD 322
LD
Sbjct: 196 GLD 198
>pdb|8RUC|A Chain A, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol Bisphosphate
pdb|8RUC|C Chain C, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol Bisphosphate
pdb|8RUC|E Chain E, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol Bisphosphate
pdb|8RUC|G Chain G, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol Bisphosphate
pdb|1IR1|A Chain A, Crystal Structure Of Spinach Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) COMPLEXED WITH CO2, MG2+
AND 2- Carboxyarabinitol-1,5-Bisphosphate
pdb|1IR1|B Chain B, Crystal Structure Of Spinach Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) COMPLEXED WITH CO2, MG2+
AND 2- Carboxyarabinitol-1,5-Bisphosphate
pdb|1IR1|C Chain C, Crystal Structure Of Spinach Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) COMPLEXED WITH CO2, MG2+
AND 2- Carboxyarabinitol-1,5-Bisphosphate
pdb|1IR1|D Chain D, Crystal Structure Of Spinach Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) COMPLEXED WITH CO2, MG2+
AND 2- Carboxyarabinitol-1,5-Bisphosphate
pdb|1UPM|B Chain B, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
pdb|1UPM|E Chain E, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
pdb|1UPM|H Chain H, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
pdb|1UPM|K Chain K, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
pdb|1UPM|L Chain L, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
pdb|1UPM|O Chain O, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
pdb|1UPM|R Chain R, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
pdb|1UPM|V Chain V, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
pdb|1UPP|A Chain A, Spinach Rubisco In Complex With 2-Carboxyarabinitol 2
Bisphosphate And Calcium.
pdb|1UPP|C Chain C, Spinach Rubisco In Complex With 2-Carboxyarabinitol 2
Bisphosphate And Calcium.
pdb|1UPP|E Chain E, Spinach Rubisco In Complex With 2-Carboxyarabinitol 2
Bisphosphate And Calcium.
pdb|1UPP|G Chain G, Spinach Rubisco In Complex With 2-Carboxyarabinitol 2
Bisphosphate And Calcium
Length = 475
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 18/123 (14%)
Query: 215 RKSSSKYYVSPVQYSPNMFPDFTTGPAYLFTSDVVSDVYTKALETTY-------LKLED- 266
R Y++ PV N + + P LF V++++T + + L+LED
Sbjct: 79 RYKGRCYHIEPVAGEENQYICYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDL 138
Query: 267 ------VFTTGVVAQSLKIKRQHVNEFFNKRIPLNACTIKKGISIHMIKYHEQ-FELWKK 319
V T ++++R +N++ PL CTIK + + Y +E +
Sbjct: 139 RIPVAYVKTFQGPPHGIQVERDKLNKYGR---PLLGCTIKPKLGLSAKNYGRAVYECLRG 195
Query: 320 LLD 322
LD
Sbjct: 196 GLD 198
>pdb|4HHH|A Chain A, Structure Of Pisum Sativum Rubisco
pdb|4HHH|B Chain B, Structure Of Pisum Sativum Rubisco
pdb|4HHH|C Chain C, Structure Of Pisum Sativum Rubisco
pdb|4HHH|D Chain D, Structure Of Pisum Sativum Rubisco
Length = 475
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 18/123 (14%)
Query: 215 RKSSSKYYVSPVQYSPNMFPDFTTGPAYLFTSDVVSDVYTKALETTY-------LKLED- 266
R Y + PV N F + P LF V++++T + + L+LED
Sbjct: 79 RYKGRCYEIEPVPGEDNQFIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDL 138
Query: 267 ------VFTTGVVAQSLKIKRQHVNEFFNKRIPLNACTIKKGISIHMIKYHEQ-FELWKK 319
V T ++++R +N++ PL CTIK + + Y +E +
Sbjct: 139 RIPYAYVKTFQGPPHGIQVERDKLNKYGR---PLLGCTIKPKLGLSAKNYGRAVYECLRG 195
Query: 320 LLD 322
LD
Sbjct: 196 GLD 198
>pdb|1WDD|A Chain A, Crystal Structure Of Activated Rice Rubisco Complexed With
2- Carboxyarabinitol-1,5-Bisphosphate
pdb|1WDD|E Chain E, Crystal Structure Of Activated Rice Rubisco Complexed With
2- Carboxyarabinitol-1,5-Bisphosphate
pdb|3AXK|A Chain A, Structure Of Rice Rubisco In Complex With Nadp(H)
pdb|3AXK|B Chain B, Structure Of Rice Rubisco In Complex With Nadp(H)
pdb|3AXM|A Chain A, Structure Of Rice Rubisco In Complex With 6pg
pdb|3AXM|B Chain B, Structure Of Rice Rubisco In Complex With 6pg
pdb|3AXM|C Chain C, Structure Of Rice Rubisco In Complex With 6pg
pdb|3AXM|D Chain D, Structure Of Rice Rubisco In Complex With 6pg
pdb|3AXM|E Chain E, Structure Of Rice Rubisco In Complex With 6pg
pdb|3AXM|F Chain F, Structure Of Rice Rubisco In Complex With 6pg
pdb|3AXM|G Chain G, Structure Of Rice Rubisco In Complex With 6pg
pdb|3AXM|H Chain H, Structure Of Rice Rubisco In Complex With 6pg
Length = 477
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 18/123 (14%)
Query: 215 RKSSSKYYVSPVQYSPNMFPDFTTGPAYLFTSDVVSDVYTKALETTY-------LKLEDV 267
R Y++ PV N + + P LF V++++T + + L+LED+
Sbjct: 79 RYKGRCYHIEPVVGEDNQYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDL 138
Query: 268 FTTGVVAQS-------LKIKRQHVNEFFNKRIPLNACTIKKGISIHMIKYHEQ-FELWKK 319
+++ ++++R +N++ PL CTIK + + Y +E +
Sbjct: 139 RIPPTYSKTFQGPPHGIQVERDKLNKYGR---PLLGCTIKPKLGLSAKNYGRACYECLRG 195
Query: 320 LLD 322
LD
Sbjct: 196 GLD 198
>pdb|1H6Y|A Chain A, The Role Of Conserved Amino Acids In The Cleft Of The
C-Terminal Family 22 Carbohydrate Binding Module Of
Clostridium Thermocellum Xyn10b In Ligand Binding
pdb|1H6Y|B Chain B, The Role Of Conserved Amino Acids In The Cleft Of The
C-Terminal Family 22 Carbohydrate Binding Module Of
Clostridium Thermocellum Xyn10b In Ligand Binding
Length = 170
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 143 IQGNFVDSYDNLTLKTVAMMEWIHDYCPDTHFILKTDDDMFINV 186
+ G+ YD + +KTV +W+H Y P + I DM++ V
Sbjct: 95 VDGSGTQRYDTIDMKTVGPNQWVHLYNPQ-YRIPSDATDMYVYV 137
>pdb|1H6X|A Chain A, The Role Of Conserved Amino Acids In The Cleft Of The
C-Terminal Family 22 Carbohydrate Binding Module Of
Clostridium Thermocellum Xyn10b In Ligand Binding
Length = 170
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 143 IQGNFVDSYDNLTLKTVAMMEWIHDYCPDTHFILKTDDDMFINV 186
+ G+ YD + +KTV +W+H Y P + I DM++ V
Sbjct: 95 VDGSGTQRYDTIDMKTVGPNQWVHLYNPQ-YRIPSDATDMYVYV 137
>pdb|3TMG|A Chain A, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
pdb|3TMG|B Chain B, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
pdb|3TMG|C Chain C, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
pdb|3TMG|D Chain D, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
Length = 280
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 120 VVGIGSDSGNQIVSEES-NLYGDIIQGNFVDSYDNLTL----KTVAMMEWIHDYCPDTHF 174
++GI + +G QIV+E++ N YG + V S +++ L ++ EWI H+
Sbjct: 127 MIGIDAGAGTQIVTEQALNYYGLSKEYELVPSSESVMLASLDSSIKRNEWILVPLWKPHW 186
Query: 175 ILKTDDDMFINVPKLL 190
D F++ P L+
Sbjct: 187 AFSRYDIKFLDDPDLI 202
>pdb|1DYO|A Chain A, Xylan-Binding Domain From Cbm 22, Formally X6b Domain
pdb|1DYO|B Chain B, Xylan-Binding Domain From Cbm 22, Formally X6b Domain
Length = 160
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 9/48 (18%)
Query: 143 IQGNFVDSYDNLTLKTVAMMEWIHDYCP---------DTHFILKTDDD 181
+ G+ YD + KTV +W+H Y P D + ++T DD
Sbjct: 95 VDGSGTQRYDTIDXKTVGPNQWVHLYNPQYRIPSDATDXYVYVETADD 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,286,486
Number of Sequences: 62578
Number of extensions: 410213
Number of successful extensions: 940
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 938
Number of HSP's gapped (non-prelim): 15
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)