Query psy16851
Match_columns 366
No_of_seqs 260 out of 1438
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 23:41:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16851.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16851hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03133 beta-1,3-galactosyltr 100.0 3.9E-64 8.5E-69 519.0 29.0 302 9-329 323-634 (636)
2 KOG2287|consensus 100.0 7.9E-62 1.7E-66 479.1 26.9 264 63-328 76-346 (349)
3 PLN03193 beta-1,3-galactosyltr 100.0 2.2E-51 4.7E-56 403.5 21.3 215 80-300 136-364 (408)
4 PF01762 Galactosyl_T: Galacto 100.0 9.3E-51 2E-55 369.5 16.0 188 97-285 1-195 (195)
5 PTZ00210 UDP-GlcNAc-dependent 100.0 7.7E-36 1.7E-40 289.9 19.7 226 81-325 78-360 (382)
6 KOG2288|consensus 100.0 2.5E-35 5.5E-40 271.1 14.7 203 81-287 9-223 (274)
7 PF02434 Fringe: Fringe-like; 99.9 3E-21 6.6E-26 182.8 11.9 210 84-309 7-232 (252)
8 KOG2246|consensus 99.7 7.7E-18 1.7E-22 166.7 12.7 168 80-284 88-268 (364)
9 PLN03153 hypothetical protein; 99.5 5.7E-13 1.2E-17 135.0 15.6 201 84-310 123-344 (537)
10 KOG3708|consensus 97.9 2.4E-05 5.2E-10 79.4 7.3 201 80-322 23-245 (681)
11 PF13641 Glyco_tranf_2_3: Glyc 96.8 0.024 5.2E-07 51.5 12.9 189 84-285 2-203 (228)
12 PF01755 Glyco_transf_25: Glyc 96.7 0.032 6.8E-07 50.4 12.4 93 87-187 4-101 (200)
13 cd04186 GT_2_like_c Subfamily 95.4 0.55 1.2E-05 39.5 13.4 84 171-285 74-158 (166)
14 TIGR03469 HonB hopene-associat 95.4 1.1 2.4E-05 44.9 17.3 162 114-280 70-250 (384)
15 cd02520 Glucosylceramide_synth 95.2 0.91 2E-05 40.4 14.5 135 114-282 30-167 (196)
16 cd04192 GT_2_like_e Subfamily 94.8 1.6 3.5E-05 39.0 15.2 157 115-279 29-195 (229)
17 cd04196 GT_2_like_d Subfamily 94.7 1.1 2.5E-05 39.5 13.9 169 100-278 11-190 (214)
18 cd02525 Succinoglycan_BP_ExoA 94.6 3.3 7.1E-05 37.5 18.3 162 114-285 31-201 (249)
19 cd06532 Glyco_transf_25 Glycos 94.6 0.41 8.9E-06 40.4 10.0 116 87-258 2-119 (128)
20 TIGR03472 HpnI hopanoid biosyn 94.5 1.4 3E-05 43.9 15.2 189 85-282 43-243 (373)
21 PLN02726 dolichyl-phosphate be 94.0 2.1 4.6E-05 39.5 14.6 162 114-287 40-213 (243)
22 PF00535 Glycos_transf_2: Glyc 93.7 0.41 8.9E-06 40.0 8.4 156 86-252 3-168 (169)
23 cd02510 pp-GalNAc-T pp-GalNAc- 93.6 4.1 8.8E-05 38.9 16.1 164 115-285 31-218 (299)
24 cd06439 CESA_like_1 CESA_like_ 93.5 1.6 3.5E-05 40.0 12.8 184 84-282 30-219 (251)
25 cd06421 CESA_CelA_like CESA_Ce 93.5 4.8 0.0001 36.2 15.7 116 162-282 76-201 (234)
26 cd04185 GT_2_like_b Subfamily 93.4 3.2 6.9E-05 36.7 14.0 136 115-281 27-163 (202)
27 cd06423 CESA_like CESA_like is 93.4 2.1 4.5E-05 35.6 12.2 148 100-253 10-170 (180)
28 cd06433 GT_2_WfgS_like WfgS an 93.3 4.1 8.8E-05 35.2 14.4 121 160-285 65-187 (202)
29 cd06427 CESA_like_2 CESA_like_ 92.7 3.8 8.2E-05 37.6 13.9 117 160-282 74-202 (241)
30 cd06434 GT2_HAS Hyaluronan syn 92.2 3.3 7.3E-05 37.4 12.7 157 114-281 28-202 (235)
31 PRK11204 N-glycosyltransferase 91.2 14 0.0003 37.2 17.0 181 83-283 54-251 (420)
32 cd04187 DPM1_like_bac Bacteria 90.1 2.7 5.9E-05 36.5 9.6 133 114-254 29-164 (181)
33 PF04646 DUF604: Protein of un 90.1 0.5 1.1E-05 44.8 5.0 71 238-309 12-92 (255)
34 cd02526 GT2_RfbF_like RfbF is 89.7 15 0.00032 33.1 17.9 122 160-285 66-197 (237)
35 PF13506 Glyco_transf_21: Glyc 88.4 0.85 1.9E-05 40.7 5.1 125 156-285 17-147 (175)
36 cd06420 GT2_Chondriotin_Pol_N 88.0 16 0.00035 31.3 15.2 97 161-280 70-168 (182)
37 TIGR03111 glyc2_xrt_Gpos1 puta 87.6 18 0.00039 37.0 14.9 76 115-196 81-156 (439)
38 cd04188 DPG_synthase DPG_synth 87.6 6.4 0.00014 35.2 10.4 160 114-286 30-202 (211)
39 PRK14583 hmsR N-glycosyltransf 87.6 23 0.0005 36.2 15.6 152 114-282 104-271 (444)
40 cd04179 DPM_DPG-synthase_like 86.9 5.8 0.00013 34.2 9.5 131 115-253 29-167 (185)
41 cd04195 GT2_AmsE_like GT2_AmsE 85.7 19 0.00041 31.5 12.3 156 115-284 30-193 (201)
42 cd06435 CESA_NdvC_like NdvC_li 85.6 27 0.00058 31.5 13.7 160 114-283 28-200 (236)
43 COG1216 Predicted glycosyltran 85.6 35 0.00076 32.8 16.8 193 84-286 4-214 (305)
44 PF13632 Glyco_trans_2_3: Glyc 85.1 2.5 5.4E-05 37.3 6.3 107 174-285 1-117 (193)
45 cd06442 DPM1_like DPM1_like re 85.0 27 0.00059 31.0 14.6 116 162-285 70-196 (224)
46 COG1215 Glycosyltransferases, 83.8 23 0.0005 35.3 13.3 192 83-285 54-258 (439)
47 TIGR01556 rhamnosyltran L-rham 81.6 7.8 0.00017 36.5 8.5 122 160-285 64-194 (281)
48 PF10111 Glyco_tranf_2_2: Glyc 79.9 56 0.0012 31.0 15.1 166 112-283 32-213 (281)
49 cd00761 Glyco_tranf_GTA_type G 79.5 30 0.00064 27.6 13.5 82 161-278 68-151 (156)
50 cd06437 CESA_CaSu_A2 Cellulose 77.9 53 0.0011 29.6 16.0 109 161-280 78-201 (232)
51 PRK10714 undecaprenyl phosphat 76.7 10 0.00022 37.2 7.9 157 114-285 38-197 (325)
52 cd04184 GT2_RfbC_Mx_like Myxoc 74.5 57 0.0012 28.3 17.1 117 161-286 74-195 (202)
53 PRK14716 bacteriophage N4 adso 71.4 69 0.0015 33.7 12.7 163 113-285 95-282 (504)
54 cd06438 EpsO_like EpsO protein 60.6 1.1E+02 0.0024 26.4 13.1 37 171-207 81-117 (183)
55 cd04191 Glucan_BSP_ModH Glucan 58.5 1.2E+02 0.0025 28.7 10.6 189 87-282 3-221 (254)
56 TIGR03030 CelA cellulose synth 57.8 2.3E+02 0.005 31.1 14.1 126 153-284 212-350 (713)
57 cd02514 GT13_GLCNAC-TI GT13_GL 56.6 2.1E+02 0.0046 28.4 14.4 82 160-252 87-174 (334)
58 cd02522 GT_2_like_a GT_2_like_ 55.3 1.5E+02 0.0032 26.1 14.0 109 162-281 64-176 (221)
59 PF05679 CHGN: Chondroitin N-a 53.2 14 0.0003 38.7 3.6 83 261-346 10-104 (499)
60 PRK11498 bcsA cellulose syntha 53.1 3.8E+02 0.0083 30.2 16.0 125 153-283 323-460 (852)
61 COG3306 Glycosyltransferase in 47.5 84 0.0018 30.0 7.7 36 237-272 155-191 (255)
62 PRK11234 nfrB bacteriophage N4 46.1 3.4E+02 0.0073 30.0 13.0 191 83-285 63-279 (727)
63 cd06913 beta3GnTL1_like Beta 1 45.2 2.2E+02 0.0048 25.2 10.2 33 162-195 76-108 (219)
64 KOG2336|consensus 43.5 24 0.00051 34.4 3.2 36 70-110 173-215 (422)
65 PF13704 Glyco_tranf_2_4: Glyc 42.2 74 0.0016 24.6 5.5 70 114-188 18-88 (97)
66 COG4092 Predicted glycosyltran 40.3 91 0.002 30.3 6.5 76 115-193 39-116 (346)
67 PF05412 Peptidase_C33: Equine 38.7 20 0.00044 29.6 1.7 29 156-184 48-81 (108)
68 cd04190 Chitin_synth_C C-termi 35.8 25 0.00054 32.5 2.1 83 170-252 72-164 (244)
69 PF03452 Anp1: Anp1; InterPro 35.1 3.7E+02 0.008 26.0 9.9 95 112-208 54-177 (269)
70 PF04666 Glyco_transf_54: N-Ac 30.0 2.7E+02 0.0059 27.2 8.3 104 82-187 51-185 (297)
71 PRK05454 glucosyltransferase M 29.6 6.7E+02 0.014 27.6 12.0 111 82-196 123-245 (691)
72 PTZ00260 dolichyl-phosphate be 25.4 6.4E+02 0.014 24.6 18.7 194 82-285 69-285 (333)
73 PHA01631 hypothetical protein 20.1 3.2E+02 0.0068 24.6 5.9 94 139-257 39-135 (176)
No 1
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=3.9e-64 Score=519.04 Aligned_cols=302 Identities=26% Similarity=0.410 Sum_probs=257.8
Q ss_pred eeeEEEeeccccc-ccccceeeeecCcccceEEeccccCCcCcccCCCCCcccccccccCccccCCCCCCCCCCCceEEE
Q psy16851 9 NFSIVTVPAVETK-KFTSTKALVLEDITRESVVQKVLPVQKNKYLDKNKGIKTEDLYVAGFNIPCVDLCPKLGDGLKILI 87 (366)
Q Consensus 9 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~Lli 87 (366)
+=-+..|||++.. +|..+...|.||+++.|+.++.+|.++++. .+.+......++ |+. +++++|||
T Consensus 323 G~H~tsF~yR~~lep~~V~~l~V~GDv~l~SV~a~~~p~~~~~~----------~~~d~e~lkApp--L~~-~~~~~LlI 389 (636)
T PLN03133 323 GKHITSFAYRETLEPWLVSEVRISGDLKLISVLASGLPTSEDSE----------HVIDLEALKSPP--LSP-KKPLDLFI 389 (636)
T ss_pred CeEEEeeeCCCCCCccceeEEEEeCcEEEEEEEeeCCCCCCchh----------cccchHHhcCCC--CCC-CCceEEEE
Confidence 3446689999855 688999999999999999999999988421 011111122222 553 45789999
Q ss_pred EEEcCcCCHHHHHHHHHHHhcccCC--CCeeEEEEecCCC-chhhhhHHHHhhhcCCeEEecccCCCCchHHHHHHHHHH
Q psy16851 88 LITSALDHSEARSAIRQTWGHYNLR--NDVAIAFVVGIGS-DSGNQIVSEESNLYGDIIQGNFVDSYDNLTLKTVAMMEW 164 (366)
Q Consensus 88 ~V~Sap~~~~rR~aIR~TW~~~~~~--~~v~v~FvlG~~~-~~~~~~l~~E~~~y~DIi~~df~DsY~Nlt~Ktl~~l~w 164 (366)
+|+|+|+|++||+|||+|||+.... ..++++|++|.+. +.+++.|.+|++.||||||+||.|+|+|||+|+++++.|
T Consensus 390 ~V~Sap~nf~rR~AIR~TWg~~~~~~~~~v~~rFvVG~s~n~~l~~~L~~Ea~~ygDIIq~dF~DsY~NLTlKtl~~~~w 469 (636)
T PLN03133 390 GVFSTANNFKRRMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVNEELWNEARTYGDIQLMPFVDYYSLITWKTLAICIF 469 (636)
T ss_pred EEeCCcccHHHHHHHHHhhccccccCCCceEEEEEEecCCcHHHHHHHHHHHHHcCCeEEEeeechhhhhHHHHHHHHHH
Confidence 9999999999999999999996532 3588999999988 778899999999999999999999999999999999999
Q ss_pred HHhhCCCcceEEEeCCCceechHHHHHHHHhcCCCcceEeeeecCCCcccccCCCceeeCCCCCCCCCCCCCCCCCcccc
Q psy16851 165 IHDYCPDTHFILKTDDDMFINVPKLLTFLVKHQNSKMTFFGRLAKKWRPIRKSSSKYYVSPVQYSPNMFPDFTTGPAYLF 244 (366)
Q Consensus 165 ~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~~~G~~~~~~~P~R~~~skwyvs~~~yp~~~yP~Y~~G~gYvl 244 (366)
+. +|++++|+||+|||+|||+++|+++|+.....+.+|+|++..++.|+|++.+|||||.++||.+.|||||+|+||||
T Consensus 470 a~-~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~eyp~~~YPpYasG~gYVl 548 (636)
T PLN03133 470 GT-EVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEWPEETYPPWAHGPGYVV 548 (636)
T ss_pred HH-hCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHHCCCCCCCCCCCcCEEEE
Confidence 86 58899999999999999999999999877667789999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhh--hcCCCCCCCchhhHHHHHH---hCCCceeecCCcccCCCCCCCCccCCeEEEecCChHHHHHHHHH
Q psy16851 245 TSDVVSDVYTKA--LETTYLKLEDVFTTGVVAQ---SLKIKRQHVNEFFNKRIPLNACTIKKGISIHMIKYHEQFELWKK 319 (366)
Q Consensus 245 S~d~~~~l~~~s--~~~~~~~~EDV~ltGi~~~---~~gi~~~~~~~f~~~~~~~~~c~~~~~it~H~~~p~em~~lW~~ 319 (366)
|+++|+.|+.++ ..+++|++||||+ |+|++ ++|+.+.+... .+....+|. .++|++|+++|.+|+++|++
T Consensus 549 S~Dla~~L~~~s~s~~l~~f~lEDVyv-Gi~l~~l~k~gl~v~~~~~---~r~~~~~C~-~~~i~~H~~sP~eM~~lW~~ 623 (636)
T PLN03133 549 SRDIAKEVYKRHKEGRLKMFKLEDVAM-GIWIAEMKKEGLEVKYEND---GRIYNEGCK-DGYVVAHYQSPREMLCLWQK 623 (636)
T ss_pred cHHHHHHHHHhhhhcccCcCChhhHhH-HHHHHHhcccCCCceeeCC---CcccCCcCC-CCeEEEecCCHHHHHHHHHH
Confidence 999999999876 4688999999997 99976 45666654443 244568898 56899999999999999999
Q ss_pred hhcCC-CCcch
Q psy16851 320 LLDGR-SKYID 329 (366)
Q Consensus 320 l~~~~-~~~~~ 329 (366)
+++++ .+||.
T Consensus 624 l~~~~~~~Cc~ 634 (636)
T PLN03133 624 LQEGKRATCCG 634 (636)
T ss_pred HhccCCCCccC
Confidence 99875 99974
No 2
>KOG2287|consensus
Probab=100.00 E-value=7.9e-62 Score=479.09 Aligned_cols=264 Identities=34% Similarity=0.622 Sum_probs=240.0
Q ss_pred ccccCccccCCCCCCCCCCCceEEEEEEcCcCCHHHHHHHHHHHhcccC--CCCeeEEEEecCCCc--hhhhhHHHHhhh
Q psy16851 63 LYVAGFNIPCVDLCPKLGDGLKILILITSALDHSEARSAIRQTWGHYNL--RNDVAIAFVVGIGSD--SGNQIVSEESNL 138 (366)
Q Consensus 63 ~~~~~~~~~~~~~C~~~~~~~~Lli~V~Sap~~~~rR~aIR~TW~~~~~--~~~v~v~FvlG~~~~--~~~~~l~~E~~~ 138 (366)
.....+.+..|..|...+ .++|+++|+|+++|++||+|||+|||++.. ...++++|++|.+.. .++++|.+|++.
T Consensus 76 ~~~~~~~l~~p~~~~~~~-~~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ 154 (349)
T KOG2287|consen 76 FQKFFYLLYLPEICDPDR-PPELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARL 154 (349)
T ss_pred hccChhhhcCChhhcCCC-CceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHH
Confidence 334444667776666533 689999999999999999999999999875 346899999999983 458999999999
Q ss_pred cCCeEEecccCCCCchHHHHHHHHHHHHhhCCCcceEEEeCCCceechHHHHHHHHhc-CCCcceEeeeecCCCcccccC
Q psy16851 139 YGDIIQGNFVDSYDNLTLKTVAMMEWIHDYCPDTHFILKTDDDMFINVPKLLTFLVKH-QNSKMTFFGRLAKKWRPIRKS 217 (366)
Q Consensus 139 y~DIi~~df~DsY~Nlt~Ktl~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~-~~~~~~~~G~~~~~~~P~R~~ 217 (366)
||||||+||.|+|.|+|+|++++++|+.++||+|+|+||+|||+|||+++|+.+|.+. .+.+.+|+|++..+..|+|++
T Consensus 155 ygDIi~~df~Dty~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~ 234 (349)
T KOG2287|consen 155 YGDIIQVDFEDTYFNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDK 234 (349)
T ss_pred hCCEEEEecccchhchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999998 788899999999999999999
Q ss_pred CCceeeCCCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhcCCCCCCCchhhHHHHHHh-CCCceeecCCcccCCCCCCC
Q psy16851 218 SSKYYVSPVQYSPNMFPDFTTGPAYLFTSDVVSDVYTKALETTYLKLEDVFTTGVVAQS-LKIKRQHVNEFFNKRIPLNA 296 (366)
Q Consensus 218 ~skwyvs~~~yp~~~yP~Y~~G~gYvlS~d~~~~l~~~s~~~~~~~~EDV~ltGi~~~~-~gi~~~~~~~f~~~~~~~~~ 296 (366)
.+|||||+++||...|||||+|+|||+|+++|++|+.++.+.+++++|||++ |+|+++ +||.+.+++.|...+...++
T Consensus 235 ~~KwyVp~~~y~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~-g~~l~~~~gi~~~~~~~~~~~~~~~~~ 313 (349)
T KOG2287|consen 235 TSKWYVPESEYPCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFV-GGCLAEDLGIKPVNHPGFFEIPLSFDP 313 (349)
T ss_pred CCCCccCHHHCCCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHH-HHHHHHhcCCCcccCcccccccccCCC
Confidence 9999999999999999999999999999999999999999999999999998 555555 59999999997776667899
Q ss_pred CccCCeEEEecCChHHHHHHHHHhhc-CCCCcc
Q psy16851 297 CTIKKGISIHMIKYHEQFELWKKLLD-GRSKYI 328 (366)
Q Consensus 297 c~~~~~it~H~~~p~em~~lW~~l~~-~~~~~~ 328 (366)
|++++++++|..+|.||.++|+.++. .+.+|.
T Consensus 314 ~~~~~~~~~H~~~p~e~~~~w~~~~~~~~~~c~ 346 (349)
T KOG2287|consen 314 CCYRDLLAVHRLSPNEMIYLWKKLKDLANLKCK 346 (349)
T ss_pred CcccceEEEecCCHHHHHHHHHHhhcccccccc
Confidence 99999999999999999999999998 778885
No 3
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=2.2e-51 Score=403.55 Aligned_cols=215 Identities=21% Similarity=0.329 Sum_probs=193.4
Q ss_pred CCCceEEEEEEcCcCCHHHHHHHHHHHhcccC-------CCCeeEEEEecCCC---chhhhhHHHHhhhcCCeEEecccC
Q psy16851 80 GDGLKILILITSALDHSEARSAIRQTWGHYNL-------RNDVAIAFVVGIGS---DSGNQIVSEESNLYGDIIQGNFVD 149 (366)
Q Consensus 80 ~~~~~Lli~V~Sap~~~~rR~aIR~TW~~~~~-------~~~v~v~FvlG~~~---~~~~~~l~~E~~~y~DIi~~df~D 149 (366)
.++++|+|+|.|+|+|++||+|||+|||+... ..++.++|++|.+. ..++++|.+|+++|||||++||.|
T Consensus 136 ~~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvD 215 (408)
T PLN03193 136 KRRYLMVVGINTAFSSRKRRDSVRATWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVE 215 (408)
T ss_pred cceEEEEEEEeCCCCCHHHHHHHHHHHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEeccc
Confidence 35689999999999999999999999998642 24689999999986 468889999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHhhCCCcceEEEeCCCceechHHHHHHHHhcCCCcceEeeeecCCCcccccCCCceeeCCCCC-
Q psy16851 150 SYDNLTLKTVAMMEWIHDYCPDTHFILKTDDDMFINVPKLLTFLVKHQNSKMTFFGRLAKKWRPIRKSSSKYYVSPVQY- 228 (366)
Q Consensus 150 sY~Nlt~Ktl~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~~~G~~~~~~~P~R~~~skwyvs~~~y- 228 (366)
+|.|||+||+++|+|+.++| +++||||+|||+|||+++|+.+|.+.....++|+|++.. .|+|++.++||++++.|
T Consensus 216 sY~NLT~KTl~~f~wA~~~~-dAkF~mK~DDDvfVnv~~L~~~L~~~~~~~rlYiG~m~~--gPvr~~~~~ky~epe~w~ 292 (408)
T PLN03193 216 GYLELSAKTKTYFATAVAMW-DADFYVKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKS--GPVLSQKGVRYHEPEYWK 292 (408)
T ss_pred ccccchHHHHHHHHHHHHcC-CCeEEEEcCCCceEcHHHHHHHHHhcCCCCCEEEEeccc--CccccCCCCcCcCccccc
Confidence 99999999999999999987 899999999999999999999998765556799999865 48898888888888888
Q ss_pred ---CCCCCCCCCCCCcccccHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhCCCceeecCCcccCCCCCCCCccC
Q psy16851 229 ---SPNMFPDFTTGPAYLFTSDVVSDVYTKALETTYLKLEDVFTTGVVAQSLKIKRQHVNEFFNKRIPLNACTIK 300 (366)
Q Consensus 229 ---p~~~yP~Y~~G~gYvlS~d~~~~l~~~s~~~~~~~~EDV~ltGi~~~~~gi~~~~~~~f~~~~~~~~~c~~~ 300 (366)
|.+.|||||+|+|||||+|+|+.|+.++...+.+++|||+| |+|+..++|+++|..+|... ....|.++
T Consensus 293 ~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n~~~L~~y~~EDV~v-G~Wl~~L~V~~vdd~~fcc~--~~~~C~~~ 364 (408)
T PLN03193 293 FGENGNKYFRHATGQLYAISKDLASYISINQHVLHKYANEDVSL-GSWFIGLDVEHIDDRRLCCG--TPPDCEWK 364 (408)
T ss_pred ccCccccCCCCCCcceEEehHHHHHHHHhChhhhcccCcchhhh-hhHhccCCceeeecccccCC--CCcccccc
Confidence 66999999999999999999999998888888999999997 99999999999999999764 34678765
No 4
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=9.3e-51 Score=369.52 Aligned_cols=188 Identities=43% Similarity=0.764 Sum_probs=176.1
Q ss_pred HHHHHHHHHHhcccC--CCCeeEEEEecCCC---chhhhhHHHHhhhcCCeEEecccCCCCchHHHHHHHHHHHHhhCCC
Q psy16851 97 EARSAIRQTWGHYNL--RNDVAIAFVVGIGS---DSGNQIVSEESNLYGDIIQGNFVDSYDNLTLKTVAMMEWIHDYCPD 171 (366)
Q Consensus 97 ~rR~aIR~TW~~~~~--~~~v~v~FvlG~~~---~~~~~~l~~E~~~y~DIi~~df~DsY~Nlt~Ktl~~l~w~~~~c~~ 171 (366)
+||++||+|||+... ..+++++|++|.+. ..+++.|.+|+++|+||||+||.|+|.|+|+|++++++|+.++|++
T Consensus 1 ~rR~~IR~TW~~~~~~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~~ 80 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNFKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWASKHCPN 80 (195)
T ss_pred ChHHHHHHHHhcccccCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHHhhCCc
Confidence 589999999999763 35789999999987 4567789999999999999999999999999999999999999999
Q ss_pred cceEEEeCCCceechHHHHHHHHhc--CCCcceEeeeecCCCcccccCCCceeeCCCCCCCCCCCCCCCCCcccccHHHH
Q psy16851 172 THFILKTDDDMFINVPKLLTFLVKH--QNSKMTFFGRLAKKWRPIRKSSSKYYVSPVQYSPNMFPDFTTGPAYLFTSDVV 249 (366)
Q Consensus 172 ~~fvlK~DDD~fVn~~~L~~~L~~~--~~~~~~~~G~~~~~~~P~R~~~skwyvs~~~yp~~~yP~Y~~G~gYvlS~d~~ 249 (366)
++|++|+|||+|||+++|.++|... ...+..++|....+..|.|++.+|||+|.++||.+.|||||+|+||+||+++|
T Consensus 81 ~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y~~~~yP~y~~G~~yvls~~~v 160 (195)
T PF01762_consen 81 AKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEYPDDYYPPYCSGGGYVLSSDVV 160 (195)
T ss_pred hhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeecccccCCCcCCCCeEEecHHHH
Confidence 9999999999999999999999987 55678899999988899999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCCchhhHHHHHHhCCCceeecC
Q psy16851 250 SDVYTKALETTYLKLEDVFTTGVVAQSLKIKRQHVN 285 (366)
Q Consensus 250 ~~l~~~s~~~~~~~~EDV~ltGi~~~~~gi~~~~~~ 285 (366)
+.|+.++..++.+++|||++ |+|++++||+++|.+
T Consensus 161 ~~i~~~~~~~~~~~~eDv~i-Gi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 161 KRIYKASSHTPFFPLEDVFI-GILAEKLGIKPIHDP 195 (195)
T ss_pred HHHHHHhhcCCCCCchHHHH-HHHHHHCCCCccCCC
Confidence 99999999999999999998 999999999998864
No 5
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=100.00 E-value=7.7e-36 Score=289.86 Aligned_cols=226 Identities=20% Similarity=0.229 Sum_probs=183.2
Q ss_pred CCceEEEEEEcCcCC--HHHHHHHHHHHhcccCC--------CCeeEEEEecCCC-c--hhhhhHHHHhhhcCCeEEecc
Q psy16851 81 DGLKILILITSALDH--SEARSAIRQTWGHYNLR--------NDVAIAFVVGIGS-D--SGNQIVSEESNLYGDIIQGNF 147 (366)
Q Consensus 81 ~~~~Lli~V~Sap~~--~~rR~aIR~TW~~~~~~--------~~v~v~FvlG~~~-~--~~~~~l~~E~~~y~DIi~~df 147 (366)
++-.++++|.|..++ +.||++.|+||.++... ..+-++|++|.+. . +++++|++|++.|||||++||
T Consensus 78 ~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVilpf 157 (382)
T PTZ00210 78 QRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIITLPT 157 (382)
T ss_pred CCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEEEec
Confidence 456789999999988 99999999999997531 1355899999988 4 789999999999999999999
Q ss_pred ------------------cCCCCchHHHHHHHHHHHHhhCCCcceEEEeCCCceechHHHHHHHHhcCCCcceEeeeecC
Q psy16851 148 ------------------VDSYDNLTLKTVAMMEWIHDYCPDTHFILKTDDDMFINVPKLLTFLVKHQNSKMTFFGRLAK 209 (366)
Q Consensus 148 ------------------~DsY~Nlt~Ktl~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~~~G~~~~ 209 (366)
.|++.|+|+||+++++|+.+.||+++|+||+|||+|||+++++++|+.. +.+.+|+|.+..
T Consensus 158 ~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G~v~~ 236 (382)
T PTZ00210 158 NDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMGRYNY 236 (382)
T ss_pred ccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEEeeCC
Confidence 7777889999999999999999999999999999999999999999765 456799999988
Q ss_pred CCcccccCCCceeeCCCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhc--C---C------------CCCCCchhhHHH
Q psy16851 210 KWRPIRKSSSKYYVSPVQYSPNMFPDFTTGPAYLFTSDVVSDVYTKALE--T---T------------YLKLEDVFTTGV 272 (366)
Q Consensus 210 ~~~P~R~~~skwyvs~~~yp~~~yP~Y~~G~gYvlS~d~~~~l~~~s~~--~---~------------~~~~EDV~ltGi 272 (366)
...|.|++ +||||+|+||+||+|+|+.|+..... . | .+..||+++ |.
T Consensus 237 ~~~p~Rd~---------------~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~EDiMv-G~ 300 (382)
T PTZ00210 237 YNRIWRRN---------------QLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYEDVMV-GM 300 (382)
T ss_pred CCccccCC---------------CCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCchHHHH-HH
Confidence 77787753 48999999999999999999987432 1 1 356899997 99
Q ss_pred HHH-hCCCcee---ec--CCcccCCCCCCCCc---cCCeEEEecCChHHHHHHHHHhhcCCC
Q psy16851 273 VAQ-SLKIKRQ---HV--NEFFNKRIPLNACT---IKKGISIHMIKYHEQFELWKKLLDGRS 325 (366)
Q Consensus 273 ~~~-~~gi~~~---~~--~~f~~~~~~~~~c~---~~~~it~H~~~p~em~~lW~~l~~~~~ 325 (366)
+++ +++.++. .. -+|++.+. ..|. ..+.|.+|+.++.+-..|.+.+++...
T Consensus 301 vLr~~~k~~~l~~V~~~~c~Fhd~~~--~~~~~~v~~~sVvvHhike~dYa~Lm~~F~n~~~ 360 (382)
T PTZ00210 301 ILREKVVYRNLISVEMGRCHFHNAGK--FGVRKSVRNMSVVIHHIQEADYEMLMDYFPEGVI 360 (382)
T ss_pred HHHHhcCcCceeeeccccccceecCC--CCCccccccceEEEEecCHHHHHHHHHHhcCCCC
Confidence 984 4444332 11 13554331 2332 247899999999988888888877644
No 6
>KOG2288|consensus
Probab=100.00 E-value=2.5e-35 Score=271.08 Aligned_cols=203 Identities=22% Similarity=0.340 Sum_probs=180.2
Q ss_pred CCceEEEEEEcCcCCHHHHHHHHHHHhcccC-------CCCeeEEEEecCCC--chhhhhHHHHhhhcCCeEEec-ccCC
Q psy16851 81 DGLKILILITSALDHSEARSAIRQTWGHYNL-------RNDVAIAFVVGIGS--DSGNQIVSEESNLYGDIIQGN-FVDS 150 (366)
Q Consensus 81 ~~~~Lli~V~Sap~~~~rR~aIR~TW~~~~~-------~~~v~v~FvlG~~~--~~~~~~l~~E~~~y~DIi~~d-f~Ds 150 (366)
+++.++|+|.|+++..+||+++|+||+.... ..+|.++|++|... ....++|.+|.++|+|.+.+| ..|+
T Consensus 9 ~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~~g~~~~r~ie~E~~~~~DfllLd~h~E~ 88 (274)
T KOG2288|consen 9 RKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTATLGASLDRALEEENAQHGDFLLLDRHEEA 88 (274)
T ss_pred cceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccCCccHHHHHHHHHHHHhcCCeEeechhHHH
Confidence 4688999999999999999999999998731 24788999999944 778889999999999999999 9999
Q ss_pred CCchHHHHHHHHHHHHhhCCCcceEEEeCCCceechHHHHHHHHhcCCCcceEeeeecCCCcccccCCCceeeCCCCCCC
Q psy16851 151 YDNLTLKTVAMMEWIHDYCPDTHFILKTDDDMFINVPKLLTFLVKHQNSKMTFFGRLAKKWRPIRKSSSKYYVSPVQYSP 230 (366)
Q Consensus 151 Y~Nlt~Ktl~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~~~G~~~~~~~P~R~~~skwyvs~~~yp~ 230 (366)
|.+|+.||+++|.++.+++ +++|++|+|||+|||++.|...|.+.....++|+|++..+. .+-.+.+|||-|+ ..-.
T Consensus 89 Y~~Ls~Kt~~~f~~A~~~~-daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~-v~~~~~~kw~Epe-Wkfg 165 (274)
T KOG2288|consen 89 YEELSAKTKAFFSAAVAHW-DAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGP-VLTQPGGKWYEPE-WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHhc-cceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCc-cccCCCCcccChh-hhcC
Confidence 9999999999999999999 89999999999999999999999988777899999988763 3455689999998 3333
Q ss_pred CC--CCCCCCCCcccccHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhCCCceeecCCc
Q psy16851 231 NM--FPDFTTGPAYLFTSDVVSDVYTKALETTYLKLEDVFTTGVVAQSLKIKRQHVNEF 287 (366)
Q Consensus 231 ~~--yP~Y~~G~gYvlS~d~~~~l~~~s~~~~~~~~EDV~ltGi~~~~~gi~~~~~~~f 287 (366)
+. |-+|+.|++|+||++++..|..+......+..|||.+ |.|+..+.|+.+|.+++
T Consensus 166 ~~g~YfrhA~G~~YvlS~dLa~yi~in~~lL~~y~nEDVSl-GaW~~gldV~h~dd~rl 223 (274)
T KOG2288|consen 166 DNGNYFRHATGGGYVLSKDLATYISINRQLLHKYANEDVSL-GAWMIGLDVEHVDDPRL 223 (274)
T ss_pred cccccchhccCceEEeeHHHHHHHHHhHHHHHhhccCCccc-ceeeeeeeeeEecCCcc
Confidence 44 9999999999999999999998888788899999998 99998888888877744
No 7
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.85 E-value=3e-21 Score=182.77 Aligned_cols=210 Identities=22% Similarity=0.271 Sum_probs=110.8
Q ss_pred eEEEEEEcCcCCHHHH-HHHHHHHhcccCCCCeeEEE-EecCCCchhhhhHHHHhhhcCCeEEecccCCCCchHHHHHHH
Q psy16851 84 KILILITSALDHSEAR-SAIRQTWGHYNLRNDVAIAF-VVGIGSDSGNQIVSEESNLYGDIIQGNFVDSYDNLTLKTVAM 161 (366)
Q Consensus 84 ~Lli~V~Sap~~~~rR-~aIR~TW~~~~~~~~v~v~F-vlG~~~~~~~~~l~~E~~~y~DIi~~df~DsY~Nlt~Ktl~~ 161 (366)
+++|+|+|++++.+.| .+|++||++.+.. ..| +.....+.+ ..+ .-.+++..+....+...+++.++.
T Consensus 7 dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~----~~~ifsd~~d~~l----~~~--~~~~l~~~~~~~~~~~~~~~~~~~ 76 (252)
T PF02434_consen 7 DIFIAVKTTKKFHKTRAPAIKQTWAKRCNK----QTFIFSDAEDPSL----PTV--TGVHLVNPNCDAGHCRKTLSCKMA 76 (252)
T ss_dssp GEEEEEE--GGGTTTTHHHHHHTGGGGSGG----GEEEEESS--HHH----HHH--HGGGEEE-------------HHHH
T ss_pred cEEEEEEeCHHHHHHHHHHHHHHHHhhcCC----ceEEecCcccccc----ccc--cccccccCCCcchhhHHHHHHHHH
Confidence 6999999999877666 7999999998753 344 343333222 222 234566666666665556666666
Q ss_pred HHHHHhhCCCcceEEEeCCCceechHHHHHHHHhcCCCcceEeeeecCCCcccccCCCceeeCCCCCCCCCCCCCCCC-C
Q psy16851 162 MEWIHDYCPDTHFILKTDDDMFINVPKLLTFLVKHQNSKMTFFGRLAKKWRPIRKSSSKYYVSPVQYSPNMFPDFTTG-P 240 (366)
Q Consensus 162 l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~~~G~~~~~~~P~R~~~skwyvs~~~yp~~~yP~Y~~G-~ 240 (366)
..+-...-++++|++++|||+||++++|+++|...++.++.|+|...... |...... .....-+...| .|++| +
T Consensus 77 ~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~-~~~~~~~---~~~~~~~~~~~-~f~~GGa 151 (252)
T PF02434_consen 77 YEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDR-PIEIIHR---FNPNKSKDSGF-WFATGGA 151 (252)
T ss_dssp HHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE---------------------------EE-GGG
T ss_pred HHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCc-cceeecc---ccccccCcCce-EeeCCCe
Confidence 66544444678999999999999999999999999999999999876532 2211000 00000001111 37765 6
Q ss_pred cccccHHHHHHHHHhhhcC--C-----CCCCCchhhHHHHHHh-CCCceeecCCcccCCCC---CCCCcc--CCeEEEec
Q psy16851 241 AYLFTSDVVSDVYTKALET--T-----YLKLEDVFTTGVVAQS-LKIKRQHVNEFFNKRIP---LNACTI--KKGISIHM 307 (366)
Q Consensus 241 gYvlS~d~~~~l~~~s~~~--~-----~~~~EDV~ltGi~~~~-~gi~~~~~~~f~~~~~~---~~~c~~--~~~it~H~ 307 (366)
||+||+.++++|....... + .-..||+.| |.|++. +||+.++.+.|+..+.. +.+-.+ +-.|++|.
T Consensus 152 G~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~l-G~ci~~~lgv~lt~s~~fhs~~~~l~~~~~~~l~~q~~~s~~~ 230 (252)
T PF02434_consen 152 GYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTL-GYCIENLLGVPLTHSPLFHSHLENLQDYNPETLHRQVPISYHK 230 (252)
T ss_dssp -EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHH-HHHHHHTT---EEE-TT---SSS-GGG--TTTGGG-SEEE-EE
T ss_pred eHHHhHHHHHHHhhhcccccccCCcCCCCCcccChh-hhhHHhcCCcceeechhhcccCcccccCCHHHhccCCCeecCC
Confidence 9999999999996543322 1 123799998 999998 99999999999875422 222222 34688998
Q ss_pred CC
Q psy16851 308 IK 309 (366)
Q Consensus 308 ~~ 309 (366)
..
T Consensus 231 ~~ 232 (252)
T PF02434_consen 231 FE 232 (252)
T ss_dssp ET
T ss_pred Cc
Confidence 74
No 8
>KOG2246|consensus
Probab=99.75 E-value=7.7e-18 Score=166.67 Aligned_cols=168 Identities=19% Similarity=0.281 Sum_probs=132.0
Q ss_pred CCCceEEEEEEcCcCCHHHH-HHHHHHHhcccCCCCeeEEEEe---cCCCchhhhhHHHHhhhcCCeEEecccCCCCchH
Q psy16851 80 GDGLKILILITSALDHSEAR-SAIRQTWGHYNLRNDVAIAFVV---GIGSDSGNQIVSEESNLYGDIIQGNFVDSYDNLT 155 (366)
Q Consensus 80 ~~~~~Lli~V~Sap~~~~rR-~aIR~TW~~~~~~~~v~v~Fvl---G~~~~~~~~~l~~E~~~y~DIi~~df~DsY~Nlt 155 (366)
.++.++++.|+|++.+...| +++-+||++.+.. ..|+- .+.. ..+. .|..+..|+|+++.
T Consensus 88 ~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~----~~f~s~~~s~~~-----------~~f~-~v~~~~~~g~~~~~ 151 (364)
T KOG2246|consen 88 SRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDK----GIFFSPTLSKDD-----------SRFP-TVYYNLPDGYRSLW 151 (364)
T ss_pred CCCceEEEEEEecCcCceeehhhhhcccccccCc----ceecCccCCCCC-----------CcCc-eeeccCCcchHHHH
Confidence 35789999999999887777 6999999998753 44543 3322 1122 33678899999999
Q ss_pred HHHHHHHHHHHhh-CCCcceEEEeCCCceechHHHHHHHHhcCCCcceEeeeecCCCcccccCCCceeeCCCCCCCCCCC
Q psy16851 156 LKTVAMMEWIHDY-CPDTHFILKTDDDMFINVPKLLTFLVKHQNSKMTFFGRLAKKWRPIRKSSSKYYVSPVQYSPNMFP 234 (366)
Q Consensus 156 ~Ktl~~l~w~~~~-c~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~~~G~~~~~~~P~R~~~skwyvs~~~yp~~~yP 234 (366)
.|+..+++++.++ -.+++|++|+|||||+.++||..+|.+.+|+++.|+|+.... |...
T Consensus 152 ~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~~-----------~~~~--------- 211 (364)
T KOG2246|consen 152 RKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSKS-----------YFQN--------- 211 (364)
T ss_pred HHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEecccccc-----------cccc---------
Confidence 9999999999854 467999999999999999999999999999999999986531 1100
Q ss_pred CCC-CCCcccccHHHHHHHHHhhhcC----CC-C--CCCchhhHHHHHHhCCCceeec
Q psy16851 235 DFT-TGPAYLFTSDVVSDVYTKALET----TY-L--KLEDVFTTGVVAQSLKIKRQHV 284 (366)
Q Consensus 235 ~Y~-~G~gYvlS~d~~~~l~~~s~~~----~~-~--~~EDV~ltGi~~~~~gi~~~~~ 284 (366)
-|. +|+||++|+++.+.+++...+. +. . ..||+.| |.|++.+||...+.
T Consensus 212 ~y~~g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i-~~Cl~~~GV~~~d~ 268 (364)
T KOG2246|consen 212 GYSSGGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRI-GRCLAEVGVPATDE 268 (364)
T ss_pred ccccCCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHH-HHHHHHhCCCccCc
Confidence 144 5679999999999988776542 22 2 4899997 99999999988765
No 9
>PLN03153 hypothetical protein; Provisional
Probab=99.49 E-value=5.7e-13 Score=135.02 Aligned_cols=201 Identities=19% Similarity=0.193 Sum_probs=125.8
Q ss_pred eEEEEEEcCcCCHH-HHHHHHHHHhcccCCCCeeEEEEecCCCchhhhhHHHHhhhcCCeEEecccCC---CCc---h--
Q psy16851 84 KILILITSALDHSE-ARSAIRQTWGHYNLRNDVAIAFVVGIGSDSGNQIVSEESNLYGDIIQGNFVDS---YDN---L-- 154 (366)
Q Consensus 84 ~Lli~V~Sap~~~~-rR~aIR~TW~~~~~~~~v~v~FvlG~~~~~~~~~l~~E~~~y~DIi~~df~Ds---Y~N---l-- 154 (366)
.++++|.++.+... |+..|+.+|.....+ ..+|+.....+. .+...---| .+.-..+ |.| .
T Consensus 123 hIvF~I~~s~~~w~~R~~yik~wW~p~~~r---g~v~ld~~~~~~------~~~~~~P~i-~is~d~s~f~y~~~~Gh~s 192 (537)
T PLN03153 123 HIMFGIAGSSQLWKRRKELVRLWWRPNQMR---GHVWLEEQVSPE------EGDDSLPPI-MVSEDTSRFRYTNPTGHPS 192 (537)
T ss_pred cEEEEEEEchhhhhhhhhhhhhhcCcccce---eEEEecccCCCC------CCcCCCCCE-EeCCCcccccccCCCCcHH
Confidence 68889998887664 558999999874322 245654433210 000000111 1110011 322 1
Q ss_pred HHHHH-HHHHHHHhhCCCcceEEEeCCCceechHHHHHHHHhcCCCcceEeeeecCCCcccccCCCceeeCCCCCCCCCC
Q psy16851 155 TLKTV-AMMEWIHDYCPDTHFILKTDDDMFINVPKLLTFLVKHQNSKMTFFGRLAKKWRPIRKSSSKYYVSPVQYSPNMF 233 (366)
Q Consensus 155 t~Ktl-~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~~~G~~~~~~~P~R~~~skwyvs~~~yp~~~y 233 (366)
++-+. ++.+-+..+.|+++|++++|||||+.++||++.|.++++.++.|+|......... ..+ . |
T Consensus 193 a~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~~qn----~~f-------~---~ 258 (537)
T PLN03153 193 GLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESHSAN----SYF-------S---H 258 (537)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccccccc----ccc-------c---c
Confidence 12221 2333333446899999999999999999999999999999999999875432110 000 0 0
Q ss_pred CCCC-CCCcccccHHHHHHHHHhhhcC----CCCCCCchhhHHHHHHhCCCceeecCCcccCCCCCCCCc------cCCe
Q psy16851 234 PDFT-TGPAYLFTSDVVSDVYTKALET----TYLKLEDVFTTGVVAQSLKIKRQHVNEFFNKRIPLNACT------IKKG 302 (366)
Q Consensus 234 P~Y~-~G~gYvlS~d~~~~l~~~s~~~----~~~~~EDV~ltGi~~~~~gi~~~~~~~f~~~~~~~~~c~------~~~~ 302 (366)
.|+ +|+||+||+.+++.|....... +...-+|..| |.|++.+||..++.++|+...+.-+... ....
T Consensus 259 -~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL-~~CL~elGV~LT~~~gfhQ~D~~Gd~~G~les~p~~P~ 336 (537)
T PLN03153 259 -NMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRL-HACITELGVPLSREPGFHQWDIRGNAHGLLSSHPIAPF 336 (537)
T ss_pred -ccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHH-HHHHHHcCCCceecCCccccccCCCcchHhhcCCCCCc
Confidence 256 4569999999999987653222 2234688887 9999999999999999987543222221 1245
Q ss_pred EEEecCCh
Q psy16851 303 ISIHMIKY 310 (366)
Q Consensus 303 it~H~~~p 310 (366)
+++|+.+.
T Consensus 337 vSlHH~~~ 344 (537)
T PLN03153 337 VSIHHVEA 344 (537)
T ss_pred eeeeeccc
Confidence 88887754
No 10
>KOG3708|consensus
Probab=97.91 E-value=2.4e-05 Score=79.36 Aligned_cols=201 Identities=15% Similarity=0.217 Sum_probs=130.3
Q ss_pred CCCceEEEEEEcCcCCHHHHHHHHHHHhcccCCCCeeEEEEecCCCchhhhhHHHHhhhcCCeEEecccCCCCchHHHH-
Q psy16851 80 GDGLKILILITSALDHSEARSAIRQTWGHYNLRNDVAIAFVVGIGSDSGNQIVSEESNLYGDIIQGNFVDSYDNLTLKT- 158 (366)
Q Consensus 80 ~~~~~Lli~V~Sap~~~~rR~aIR~TW~~~~~~~~v~v~FvlG~~~~~~~~~l~~E~~~y~DIi~~df~DsY~Nlt~Kt- 158 (366)
|.+-+|+++|+|.. .---||-+|-+.... ++.|+.+.+.-. .|.-|...+--|+.-..|+
T Consensus 23 G~RErl~~aVmte~---tlA~a~NrT~ahhvp----rv~~F~~~~~i~------------~~~a~~~~vs~~d~r~~~~~ 83 (681)
T KOG3708|consen 23 GTRERLMAAVMTES---TLALAINRTLAHHVP----RVHLFADSSRID------------NDLAQLTNVSPYDLRGQKTH 83 (681)
T ss_pred hhHHHHHHHHHHHH---HHHHHHHHHHHhhcc----eeEEeecccccc------------ccHhhccccCccccCccccH
Confidence 34557899999932 566788888887654 467777776511 1111222222232223333
Q ss_pred HHHHHHHHhhC-CCcceEEEeCCCceechHHHHHHHHhcCCCcceEeeeecCCCcccccCCCceeeCCCCCCCCCCCCCC
Q psy16851 159 VAMMEWIHDYC-PDTHFILKTDDDMFINVPKLLTFLVKHQNSKMTFFGRLAKKWRPIRKSSSKYYVSPVQYSPNMFPDFT 237 (366)
Q Consensus 159 l~~l~w~~~~c-~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~~~G~~~~~~~P~R~~~skwyvs~~~yp~~~yP~Y~ 237 (366)
-+.++++.+++ .+++|++-+-||+|||...|+..+...+-..++|+|.-..+ .++ =|
T Consensus 84 s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~~~------gs~----------------rC 141 (681)
T KOG3708|consen 84 SMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEAED------GSG----------------RC 141 (681)
T ss_pred HHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhhhC------ccC----------------cc
Confidence 45567777766 46999999999999999999999999988899999943221 111 27
Q ss_pred CC-CcccccHHHHHHHHHhhhcCC---CCCCCchhhHHHHHHh-CCCceee----cCCccc-----CC---CC-C-CCCc
Q psy16851 238 TG-PAYLFTSDVVSDVYTKALETT---YLKLEDVFTTGVVAQS-LKIKRQH----VNEFFN-----KR---IP-L-NACT 298 (366)
Q Consensus 238 ~G-~gYvlS~d~~~~l~~~s~~~~---~~~~EDV~ltGi~~~~-~gi~~~~----~~~f~~-----~~---~~-~-~~c~ 298 (366)
++ .||+||+.++..+-..-.... .-.=.|+.+ |.|++. .|+..+. +..|.. .+ ++ + ..-.
T Consensus 142 ~l~~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~l-grCi~~At~v~C~~~hQGvrq~s~~~dspgr~~~~~e~~~s~a 220 (681)
T KOG3708|consen 142 RLDTGMLLSQSLLHALRNNLEGCRNDILSADPDEWL-GRCIQDATGVGCKPLHQGVRQYSEREDSPGRHDSIPEWEGSPA 220 (681)
T ss_pred ccccceeecHHHHHHHHhhHHHhhcccccCCcHHHH-HHHHHHhhcCCccchhhhHHhhhHhhcCCCccccchhhcCChH
Confidence 54 699999999999976544333 334568997 999874 4665432 112211 01 11 0 1122
Q ss_pred cCCeEEEecC-ChHHHHHHHHHhhc
Q psy16851 299 IKKGISIHMI-KYHEQFELWKKLLD 322 (366)
Q Consensus 299 ~~~~it~H~~-~p~em~~lW~~l~~ 322 (366)
+++.+++|.+ +|.+|+.|++.+..
T Consensus 221 Fr~A~tv~pv~~p~d~yrLH~yfsr 245 (681)
T KOG3708|consen 221 FRSALTVHPVLSPADMYRLHKYFSR 245 (681)
T ss_pred HhhhhccCccCCHHHHHHHHHHHHH
Confidence 5678999987 58899999887743
No 11
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=96.85 E-value=0.024 Score=51.47 Aligned_cols=189 Identities=13% Similarity=0.080 Sum_probs=89.3
Q ss_pred eEEEEEEcCcCCHHHHHHHHHHHhcccCCCCeeEEEEecCCCchhhhhHHHHhhhcCCe--EEecccCCCCch--HHHHH
Q psy16851 84 KILILITSALDHSEARSAIRQTWGHYNLRNDVAIAFVVGIGSDSGNQIVSEESNLYGDI--IQGNFVDSYDNL--TLKTV 159 (366)
Q Consensus 84 ~Lli~V~Sap~~~~rR~aIR~TW~~~~~~~~v~v~FvlG~~~~~~~~~l~~E~~~y~DI--i~~df~DsY~Nl--t~Ktl 159 (366)
.+.|+|.+......-++.|+.--.+.. ..++++++...+.+...+.+.+-.+.++.+ ..+... .|. +.|.
T Consensus 2 ~v~Vvip~~~~~~~l~~~l~sl~~~~~--~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~---~~~g~~~k~- 75 (228)
T PF13641_consen 2 RVSVVIPAYNEDDVLRRCLESLLAQDY--PRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRP---RNPGPGGKA- 75 (228)
T ss_dssp -EEEE--BSS-HHHHHHHHHHHTTSHH--HTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE-------HHHHHHH-
T ss_pred EEEEEEEecCCHHHHHHHHHHHHcCCC--CCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecC---CCCCcchHH-
Confidence 355666655443444555554443321 236666666555444445565555666653 222211 222 2343
Q ss_pred HHHHHHHhhCCCcceEEEeCCCceechHHHHHHHHhc-CCCcceEeeeecCCCc--ccc----cCCCceeeCCCCCCC-C
Q psy16851 160 AMMEWIHDYCPDTHFILKTDDDMFINVPKLLTFLVKH-QNSKMTFFGRLAKKWR--PIR----KSSSKYYVSPVQYSP-N 231 (366)
Q Consensus 160 ~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~-~~~~~~~~G~~~~~~~--P~R----~~~skwyvs~~~yp~-~ 231 (366)
.++.++.+.. +.+|++.+|||+.+..+-|...+... .+.-..+.|....... ... .....|+.. ..+. .
T Consensus 76 ~a~n~~~~~~-~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 152 (228)
T PF13641_consen 76 RALNEALAAA-RGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLR--FRSGRR 152 (228)
T ss_dssp HHHHHHHHH----SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTT--S-TT-B
T ss_pred HHHHHHHHhc-CCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhh--hhhhhc
Confidence 3457777776 59999999999999988888777665 3333444444422110 000 000011110 0011 1
Q ss_pred CCC-CCCCCCcccccHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhCCCceeecC
Q psy16851 232 MFP-DFTTGPAYLFTSDVVSDVYTKALETTYLKLEDVFTTGVVAQSLKIKRQHVN 285 (366)
Q Consensus 232 ~yP-~Y~~G~gYvlS~d~~~~l~~~s~~~~~~~~EDV~ltGi~~~~~gi~~~~~~ 285 (366)
.+. .++.|++.++.+++++.+-.- . +....||..+ +.-+.+.|.+....+
T Consensus 153 ~~~~~~~~G~~~~~rr~~~~~~g~f--d-~~~~~eD~~l-~~r~~~~G~~~~~~~ 203 (228)
T PF13641_consen 153 ALGVAFLSGSGMLFRRSALEEVGGF--D-PFILGEDFDL-CLRLRAAGWRIVYAP 203 (228)
T ss_dssp ----S-B--TEEEEEHHHHHHH-S-----SSSSSHHHHH-HHHHHHTT--EEEEE
T ss_pred ccceeeccCcEEEEEHHHHHHhCCC--C-CCCcccHHHH-HHHHHHCCCcEEEEC
Confidence 111 346799999999999998421 1 1445699997 888888887655433
No 12
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=96.69 E-value=0.032 Score=50.39 Aligned_cols=93 Identities=15% Similarity=0.192 Sum_probs=55.1
Q ss_pred EEEEcCcCCHHHHHHHHHHHhcccCCCCeeEEEEecCCCchhhhhHHHHhhhcCCeEE-----ecccCCCCchHHHHHHH
Q psy16851 87 ILITSALDHSEARSAIRQTWGHYNLRNDVAIAFVVGIGSDSGNQIVSEESNLYGDIIQ-----GNFVDSYDNLTLKTVAM 161 (366)
Q Consensus 87 i~V~Sap~~~~rR~aIR~TW~~~~~~~~v~v~FvlG~~~~~~~~~l~~E~~~y~DIi~-----~df~DsY~Nlt~Ktl~~ 161 (366)
|.|.|-+...+||+.+.+..... ++.+-|+-|.....+.. .+....+..-.. -...-+--.-++-.+..
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~----~~~~e~~~Avdg~~l~~--~~~~~~~~~~~~~~~~~~~lt~gEiGC~lSH~~~ 77 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL----GINFEFFDAVDGRDLSE--DELFRRYDPELFKKRYGRPLTPGEIGCALSHIKA 77 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc----CCceEEEEeecccccch--HHHHHHhhhhhhhccccccCCcceEeehhhHHHH
Confidence 56788888999999998887654 34566776665422211 011111111110 01111111225666777
Q ss_pred HHHHHhhCCCcceEEEeCCCceechH
Q psy16851 162 MEWIHDYCPDTHFILKTDDDMFINVP 187 (366)
Q Consensus 162 l~w~~~~c~~~~fvlK~DDD~fVn~~ 187 (366)
++-+.+. +.++.+-..||+.++.+
T Consensus 78 w~~~v~~--~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 78 WQRIVDS--GLEYALILEDDVIFDPD 101 (200)
T ss_pred HHHHHHc--CCCeEEEEecccccccc
Confidence 7777764 58999999999999854
No 13
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.44 E-value=0.55 Score=39.50 Aligned_cols=84 Identities=19% Similarity=0.212 Sum_probs=54.8
Q ss_pred CcceEEEeCCCceechHHHHHHHHhcCC-CcceEeeeecCCCcccccCCCceeeCCCCCCCCCCCCCCCCCcccccHHHH
Q psy16851 171 DTHFILKTDDDMFINVPKLLTFLVKHQN-SKMTFFGRLAKKWRPIRKSSSKYYVSPVQYSPNMFPDFTTGPAYLFTSDVV 249 (366)
Q Consensus 171 ~~~fvlK~DDD~fVn~~~L~~~L~~~~~-~~~~~~G~~~~~~~P~R~~~skwyvs~~~yp~~~yP~Y~~G~gYvlS~d~~ 249 (366)
+.+|++.+|||..+..+.+...++.... .+-..++.. +.|++.+++++++
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~ 124 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK-----------------------------VSGAFLLVRREVF 124 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc-----------------------------CceeeEeeeHHHH
Confidence 6899999999999998888887764321 122222221 5788999999999
Q ss_pred HHHHHhhhcCCCCCCCchhhHHHHHHhCCCceeecC
Q psy16851 250 SDVYTKALETTYLKLEDVFTTGVVAQSLKIKRQHVN 285 (366)
Q Consensus 250 ~~l~~~s~~~~~~~~EDV~ltGi~~~~~gi~~~~~~ 285 (366)
+.+-.-... .....||..+ ..-+...|.+....+
T Consensus 125 ~~~~~~~~~-~~~~~eD~~~-~~~~~~~g~~i~~~~ 158 (166)
T cd04186 125 EEVGGFDED-FFLYYEDVDL-CLRARLAGYRVLYVP 158 (166)
T ss_pred HHcCCCChh-hhccccHHHH-HHHHHHcCCeEEEcc
Confidence 876311111 1126689887 666666666554433
No 14
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=95.36 E-value=1.1 Score=44.92 Aligned_cols=162 Identities=10% Similarity=0.064 Sum_probs=83.9
Q ss_pred CeeEEEEecCCCchhhhhHHHHhhhcC---CeEEecccCCCCchHHHH---HHHHHHHHhhCCCcceEEEeCCCceechH
Q psy16851 114 DVAIAFVVGIGSDSGNQIVSEESNLYG---DIIQGNFVDSYDNLTLKT---VAMMEWIHDYCPDTHFILKTDDDMFINVP 187 (366)
Q Consensus 114 ~v~v~FvlG~~~~~~~~~l~~E~~~y~---DIi~~df~DsY~Nlt~Kt---l~~l~w~~~~c~~~~fvlK~DDD~fVn~~ 187 (366)
..+++++-..+.+...+.+++=.+.+. .+......+.-.+...|. -.+++.+.+.+++.+|++.+|+|+.+..+
T Consensus 70 ~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~ 149 (384)
T TIGR03469 70 KLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPD 149 (384)
T ss_pred ceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChh
Confidence 367787777666333222322223343 444443322212223443 34556655555558999999999999988
Q ss_pred HHHHHHHhcCCCc-ceEeeeecCCCcccccCCCceeeC------CCCCCC------CCCCCCCCCCcccccHHHHHHHHH
Q psy16851 188 KLLTFLVKHQNSK-MTFFGRLAKKWRPIRKSSSKYYVS------PVQYSP------NMFPDFTTGPAYLFTSDVVSDVYT 254 (366)
Q Consensus 188 ~L~~~L~~~~~~~-~~~~G~~~~~~~P~R~~~skwyvs------~~~yp~------~~yP~Y~~G~gYvlS~d~~~~l~~ 254 (366)
.|.+.+......+ ....|....... ....+..++ ...+|. .....++.|++.++++++.+++--
T Consensus 150 ~l~~lv~~~~~~~~~~vs~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~lirr~~~~~vGG 226 (384)
T TIGR03469 150 NLARLVARARAEGLDLVSLMVRLRCE---SFWEKLLIPAFVFFFQKLYPFRWVNDPRRRTAAAAGGCILIRREALERIGG 226 (384)
T ss_pred HHHHHHHHHHhCCCCEEEecccccCC---CHHHHHHHHHHHHHHHHhcchhhhcCCCccceeecceEEEEEHHHHHHcCC
Confidence 8877776543222 222222211000 000000000 000000 011235679999999999998821
Q ss_pred hhhcCCCCCCCchhhHHHHHHhCCCc
Q psy16851 255 KALETTYLKLEDVFTTGVVAQSLKIK 280 (366)
Q Consensus 255 ~s~~~~~~~~EDV~ltGi~~~~~gi~ 280 (366)
- ........||+.+ +.-+++.|.+
T Consensus 227 f-~~~~~~~~ED~~L-~~r~~~~G~~ 250 (384)
T TIGR03469 227 I-AAIRGALIDDCTL-AAAVKRSGGR 250 (384)
T ss_pred H-HHHhhCcccHHHH-HHHHHHcCCc
Confidence 1 1122235799998 8888887743
No 15
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=95.17 E-value=0.91 Score=40.41 Aligned_cols=135 Identities=13% Similarity=0.019 Sum_probs=79.6
Q ss_pred CeeEEEEecCCCchhhhhHHHHhhhcCC--eEEecccCCCCchHHHHHHHHHHHHhhCCCcceEEEeCCCceechHHHHH
Q psy16851 114 DVAIAFVVGIGSDSGNQIVSEESNLYGD--IIQGNFVDSYDNLTLKTVAMMEWIHDYCPDTHFILKTDDDMFINVPKLLT 191 (366)
Q Consensus 114 ~v~v~FvlG~~~~~~~~~l~~E~~~y~D--Ii~~df~DsY~Nlt~Ktl~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~ 191 (366)
.+++++|...+.+...+.+++-.+.+.. +......... ....|.- .+..+.+.+ +.+|++.+|+|+.+..+.|..
T Consensus 30 ~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~-~~n~g~~~a-~~d~i~~~D~D~~~~~~~l~~ 106 (196)
T cd02520 30 KYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKV-GINPKVN-NLIKGYEEA-RYDILVISDSDISVPPDYLRR 106 (196)
T ss_pred CeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHH-HHHHHHHhC-CCCEEEEECCCceEChhHHHH
Confidence 4678888777764333444444455543 3222111111 1223432 344555555 689999999999998888777
Q ss_pred HHHhcC-CCcceEeeeecCCCcccccCCCceeeCCCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhcCCCCCCCchhhH
Q psy16851 192 FLVKHQ-NSKMTFFGRLAKKWRPIRKSSSKYYVSPVQYSPNMFPDFTTGPAYLFTSDVVSDVYTKALETTYLKLEDVFTT 270 (366)
Q Consensus 192 ~L~~~~-~~~~~~~G~~~~~~~P~R~~~skwyvs~~~yp~~~yP~Y~~G~gYvlS~d~~~~l~~~s~~~~~~~~EDV~lt 270 (366)
.+.... +.-..+.|. ++.|++.++.+++.+.+---. .......||..+
T Consensus 107 l~~~~~~~~~~~v~~~-----------------------------~~~g~~~~~r~~~~~~~ggf~-~~~~~~~eD~~l- 155 (196)
T cd02520 107 MVAPLMDPGVGLVTCL-----------------------------CAFGKSMALRREVLDAIGGFE-AFADYLAEDYFL- 155 (196)
T ss_pred HHHHhhCCCCCeEEee-----------------------------cccCceeeeEHHHHHhccChH-HHhHHHHHHHHH-
Confidence 776532 222222221 567899999999999873221 112234699997
Q ss_pred HHHHHhCCCcee
Q psy16851 271 GVVAQSLKIKRQ 282 (366)
Q Consensus 271 Gi~~~~~gi~~~ 282 (366)
+.-+...|.+..
T Consensus 156 ~~rl~~~G~~i~ 167 (196)
T cd02520 156 GKLIWRLGYRVV 167 (196)
T ss_pred HHHHHHcCCeEE
Confidence 777777775543
No 16
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.80 E-value=1.6 Score=39.00 Aligned_cols=157 Identities=13% Similarity=-0.001 Sum_probs=81.1
Q ss_pred eeEEEEecCCCchhhhhHHHHhhh--cCCeEEecccCCCCchHHHHHHHHHHHHhhCCCcceEEEeCCCceechHHHHHH
Q psy16851 115 VAIAFVVGIGSDSGNQIVSEESNL--YGDIIQGNFVDSYDNLTLKTVAMMEWIHDYCPDTHFILKTDDDMFINVPKLLTF 192 (366)
Q Consensus 115 v~v~FvlG~~~~~~~~~l~~E~~~--y~DIi~~df~DsY~Nlt~Ktl~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~ 192 (366)
+.++.+-+.+.+...+.+. +... +..+....... -.|.. |. .++.++.+.+ +.+|++.+|+|..+..+-|...
T Consensus 29 ~eiivvdd~s~d~t~~~~~-~~~~~~~~~v~~~~~~~-~~~~g-~~-~a~n~g~~~~-~~d~i~~~D~D~~~~~~~l~~l 103 (229)
T cd04192 29 FEVILVDDHSTDGTVQILE-FAAAKPNFQLKILNNSR-VSISG-KK-NALTTAIKAA-KGDWIVTTDADCVVPSNWLLTF 103 (229)
T ss_pred eEEEEEcCCCCcChHHHHH-HHHhCCCcceEEeeccC-cccch-hH-HHHHHHHHHh-cCCEEEEECCCcccCHHHHHHH
Confidence 5677666665533333344 2222 23344454443 22322 32 3456666665 6899999999999998777777
Q ss_pred HHhcC-CCcceEeeeecCCCccc----ccCCCceeeC---CCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhcCCCCCC
Q psy16851 193 LVKHQ-NSKMTFFGRLAKKWRPI----RKSSSKYYVS---PVQYSPNMFPDFTTGPAYLFTSDVVSDVYTKALETTYLKL 264 (366)
Q Consensus 193 L~~~~-~~~~~~~G~~~~~~~P~----R~~~skwyvs---~~~yp~~~yP~Y~~G~gYvlS~d~~~~l~~~s~~~~~~~~ 264 (366)
+.... +....+.|..... .+. +...-.+... ........+|..+.|+++++++++.+.+---. .......
T Consensus 104 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf~-~~~~~~~ 181 (229)
T cd04192 104 VAFIQKEQIGLVAGPVIYF-KGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGGFE-GNDHIAS 181 (229)
T ss_pred HHHhhcCCCcEEeeeeeec-CCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhcCCc-ccccccc
Confidence 76432 2334555554322 000 0000000000 00011223455667889999999999883211 1123456
Q ss_pred CchhhHHHHHHhCCC
Q psy16851 265 EDVFTTGVVAQSLKI 279 (366)
Q Consensus 265 EDV~ltGi~~~~~gi 279 (366)
||..+ +.-+...|.
T Consensus 182 eD~~~-~~~~~~~g~ 195 (229)
T cd04192 182 GDDEL-LLAKVASKY 195 (229)
T ss_pred CCHHH-HHHHHHhCC
Confidence 77765 554444443
No 17
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.71 E-value=1.1 Score=39.52 Aligned_cols=169 Identities=13% Similarity=0.113 Sum_probs=84.6
Q ss_pred HHHHHHHhcccC--CCCeeEEEEecCCCchhhhhHHHHhhhcC-CeEEecccCCCCchHHHHHHHHHHHHhhCCCcceEE
Q psy16851 100 SAIRQTWGHYNL--RNDVAIAFVVGIGSDSGNQIVSEESNLYG-DIIQGNFVDSYDNLTLKTVAMMEWIHDYCPDTHFIL 176 (366)
Q Consensus 100 ~aIR~TW~~~~~--~~~v~v~FvlG~~~~~~~~~l~~E~~~y~-DIi~~df~DsY~Nlt~Ktl~~l~w~~~~c~~~~fvl 176 (366)
+.|.+++.+-.. ...++++++-..+.+...+.+++-+..++ .+.......+. ... ..+..+...+ +.+|++
T Consensus 11 ~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~-G~~----~~~n~g~~~~-~g~~v~ 84 (214)
T cd04196 11 KYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNL-GVA----RNFESLLQAA-DGDYVF 84 (214)
T ss_pred HHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCc-cHH----HHHHHHHHhC-CCCEEE
Confidence 345555544221 12567777766555433344444444443 23333333322 222 2333344444 689999
Q ss_pred EeCCCceechHHHHHHHHh-cCCCc-ceEeeeecC--CCcccccCCCceeeCC----CCCCCCCCCCCCCCCcccccHHH
Q psy16851 177 KTDDDMFINVPKLLTFLVK-HQNSK-MTFFGRLAK--KWRPIRKSSSKYYVSP----VQYSPNMFPDFTTGPAYLFTSDV 248 (366)
Q Consensus 177 K~DDD~fVn~~~L~~~L~~-~~~~~-~~~~G~~~~--~~~P~R~~~skwyvs~----~~yp~~~yP~Y~~G~gYvlS~d~ 248 (366)
..|+|.....+.|...+.. ..... ..+.|.... ....... ...+.... ..+.......++.|+++++.+++
T Consensus 85 ~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 163 (214)
T cd04196 85 FCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIG-ESFFEYQKIKPGTSFNNLLFQNVVTGCTMAFNREL 163 (214)
T ss_pred EECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcc-cccccccccCCccCHHHHHHhCccCCceeeEEHHH
Confidence 9999999988888877765 22223 334443221 1111000 01110000 00111112245678899999999
Q ss_pred HHHHHHhhhcCCCCCCCchhhHHHHHHhCC
Q psy16851 249 VSDVYTKALETTYLKLEDVFTTGVVAQSLK 278 (366)
Q Consensus 249 ~~~l~~~s~~~~~~~~EDV~ltGi~~~~~g 278 (366)
++.+..-... ....||.++ .+.+...|
T Consensus 164 ~~~~~~~~~~--~~~~~D~~~-~~~~~~~~ 190 (214)
T cd04196 164 LELALPFPDA--DVIMHDWWL-ALLASAFG 190 (214)
T ss_pred HHhhcccccc--ccccchHHH-HHHHHHcC
Confidence 9987532221 156889886 66555543
No 18
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=94.65 E-value=3.3 Score=37.48 Aligned_cols=162 Identities=14% Similarity=0.031 Sum_probs=84.3
Q ss_pred CeeEEEEecCCCchhhhhHHHHhhhcCCeEEecccCCCCchHHHHHHHHHHHHhhCCCcceEEEeCCCceechHHHHHHH
Q psy16851 114 DVAIAFVVGIGSDSGNQIVSEESNLYGDIIQGNFVDSYDNLTLKTVAMMEWIHDYCPDTHFILKTDDDMFINVPKLLTFL 193 (366)
Q Consensus 114 ~v~v~FvlG~~~~~~~~~l~~E~~~y~DIi~~df~DsY~Nlt~Ktl~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L 193 (366)
..+++.+.+.+.+...+.++...+.+..+....-.. .. + -.++..+.+.. +.+|++.+|||..+..+-|...+
T Consensus 31 ~~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~~~~----~~-~-~~a~N~g~~~a-~~d~v~~lD~D~~~~~~~l~~~~ 103 (249)
T cd02525 31 LIEIIVVDGGSTDGTREIVQEYAAKDPRIRLIDNPK----RI-Q-SAGLNIGIRNS-RGDIIIRVDAHAVYPKDYILELV 103 (249)
T ss_pred ccEEEEEeCCCCccHHHHHHHHHhcCCeEEEEeCCC----CC-c-hHHHHHHHHHh-CCCEEEEECCCccCCHHHHHHHH
Confidence 456777766666544455555544444444333221 11 1 13466666654 68999999999999887777777
Q ss_pred HhcCC-CcceEeeeecCC-Cccccc-----CCCceeeCCCCCCCCCC--CCCCCCCcccccHHHHHHHHHhhhcCCCCCC
Q psy16851 194 VKHQN-SKMTFFGRLAKK-WRPIRK-----SSSKYYVSPVQYSPNMF--PDFTTGPAYLFTSDVVSDVYTKALETTYLKL 264 (366)
Q Consensus 194 ~~~~~-~~~~~~G~~~~~-~~P~R~-----~~skwyvs~~~yp~~~y--P~Y~~G~gYvlS~d~~~~l~~~s~~~~~~~~ 264 (366)
..... ......|..... ..+... ..+.+......+..... =.++.|++.++++++.+++.- ........
T Consensus 104 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~ 181 (249)
T cd02525 104 EALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRGGAVKIGYVDTVHHGAYRREVFEKVGG--FDESLVRN 181 (249)
T ss_pred HHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCccccccccccccccccccceEEHHHHHHhCC--CCcccCcc
Confidence 54322 223344443221 111100 00000000000000000 014567788899999887732 22223457
Q ss_pred CchhhHHHHHHhCCCceeecC
Q psy16851 265 EDVFTTGVVAQSLKIKRQHVN 285 (366)
Q Consensus 265 EDV~ltGi~~~~~gi~~~~~~ 285 (366)
||..+ +.-+.+.|.+....+
T Consensus 182 eD~~l-~~r~~~~G~~~~~~~ 201 (249)
T cd02525 182 EDAEL-NYRLRKAGYKIWLSP 201 (249)
T ss_pred chhHH-HHHHHHcCcEEEEcC
Confidence 99987 777777776655443
No 19
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=94.56 E-value=0.41 Score=40.42 Aligned_cols=116 Identities=9% Similarity=0.088 Sum_probs=72.3
Q ss_pred EEEEcCcCCHHHHHHHHHHHhcccCCCCeeEEEEecCCCchhhh-hHHHHhhhcCC-eEEecccCCCCchHHHHHHHHHH
Q psy16851 87 ILITSALDHSEARSAIRQTWGHYNLRNDVAIAFVVGIGSDSGNQ-IVSEESNLYGD-IIQGNFVDSYDNLTLKTVAMMEW 164 (366)
Q Consensus 87 i~V~Sap~~~~rR~aIR~TW~~~~~~~~v~v~FvlG~~~~~~~~-~l~~E~~~y~D-Ii~~df~DsY~Nlt~Ktl~~l~w 164 (366)
|.|.|-+...+||..+++..... ++.+-|+-|....++.. .+......+.. ....+...+--.-.+..+..++-
T Consensus 2 i~vInL~~~~~Rr~~~~~~~~~~----~~~~~~~~Avd~~~~~~~~~~~~~~~~~~~~~~~~l~~gEiGC~lSH~~~w~~ 77 (128)
T cd06532 2 IFVINLDRSTDRRERMEAQLAAL----GLDFEFFDAVDGKDLSEEELAALYDALFLPRYGRPLTPGEIGCFLSHYKLWQK 77 (128)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc----CCCeEEEeccccccCCHHHHHHHhHHHhhhhcCCCCChhhHHHHHHHHHHHHH
Confidence 46778888999999999866543 34567777765522221 12111110000 00111122222234566677777
Q ss_pred HHhhCCCcceEEEeCCCceechHHHHHHHHhcCCCcceEeeeecCCCcccccCCCceeeCCCCCCCCCCCCCCCCCcccc
Q psy16851 165 IHDYCPDTHFILKTDDDMFINVPKLLTFLVKHQNSKMTFFGRLAKKWRPIRKSSSKYYVSPVQYSPNMFPDFTTGPAYLF 244 (366)
Q Consensus 165 ~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~~~G~~~~~~~P~R~~~skwyvs~~~yp~~~yP~Y~~G~gYvl 244 (366)
+.+. +.++.+-..||+.+..+ ...||++
T Consensus 78 ~~~~--~~~~alIlEDDv~~~~~--------------------------------------------------~~~~Y~v 105 (128)
T cd06532 78 IVES--NLEYALILEDDAILDPD--------------------------------------------------GTAGYLV 105 (128)
T ss_pred HHHc--CCCeEEEEccCcEECCC--------------------------------------------------CceEEEe
Confidence 7663 57999999999999876 3358999
Q ss_pred cHHHHHHHHHhhhc
Q psy16851 245 TSDVVSDVYTKALE 258 (366)
Q Consensus 245 S~d~~~~l~~~s~~ 258 (366)
|+++|++++.....
T Consensus 106 s~~~A~~ll~~~~~ 119 (128)
T cd06532 106 SRKGAKKLLAALEP 119 (128)
T ss_pred CHHHHHHHHHhCCC
Confidence 99999999987654
No 20
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=94.47 E-value=1.4 Score=43.95 Aligned_cols=189 Identities=11% Similarity=0.065 Sum_probs=96.8
Q ss_pred EEEEEEcCcCCHHHHHHHHHHHhcccCCCCeeEEEEecCCCchhhhhHHHHhhhcCC--eEEecccCCCCchHHHHHHHH
Q psy16851 85 ILILITSALDHSEARSAIRQTWGHYNLRNDVAIAFVVGIGSDSGNQIVSEESNLYGD--IIQGNFVDSYDNLTLKTVAMM 162 (366)
Q Consensus 85 Lli~V~Sap~~~~rR~aIR~TW~~~~~~~~v~v~FvlG~~~~~~~~~l~~E~~~y~D--Ii~~df~DsY~Nlt~Ktl~~l 162 (366)
+-|+|........-.+.|+ +..+.. .+..+++++...+++...+.+++=.+.|.+ |..+.-.+. .....|.-+..
T Consensus 43 VSViiP~~nee~~l~~~L~-Sl~~q~-Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~-~G~~~K~~~l~ 119 (373)
T TIGR03472 43 VSVLKPLHGDEPELYENLA-SFCRQD-YPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARR-HGPNRKVSNLI 119 (373)
T ss_pred eEEEEECCCCChhHHHHHH-HHHhcC-CCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCC-CCCChHHHHHH
Confidence 4444444333322334443 232221 234778887766653333333333455666 322211111 12234654443
Q ss_pred HHHHhhCCCcceEEEeCCCceechHHHHHHHHhcCCCc-ceEeeeecCCCcccccCCCc---eeeCCCCCCC------CC
Q psy16851 163 EWIHDYCPDTHFILKTDDDMFINVPKLLTFLVKHQNSK-MTFFGRLAKKWRPIRKSSSK---YYVSPVQYSP------NM 232 (366)
Q Consensus 163 ~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~-~~~~G~~~~~~~P~R~~~sk---wyvs~~~yp~------~~ 232 (366)
+ +.+.+ +.+|++.+|+|+.+..+-|...+......+ ....|... . .+.....++ ..+....+|. ..
T Consensus 120 ~-~~~~a-~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 195 (373)
T TIGR03472 120 N-MLPHA-RHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYR-G-RPVPGFWSRLGAMGINHNFLPSVMVARALG 195 (373)
T ss_pred H-HHHhc-cCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEecccc-C-CCCCCHHHHHHHHHhhhhhhHHHHHHHhcc
Confidence 3 45554 689999999999999888888776653222 33333221 1 111100000 0111111110 01
Q ss_pred CCCCCCCCcccccHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhCCCcee
Q psy16851 233 FPDFTTGPAYLFTSDVVSDVYTKALETTYLKLEDVFTTGVVAQSLKIKRQ 282 (366)
Q Consensus 233 yP~Y~~G~gYvlS~d~~~~l~~~s~~~~~~~~EDV~ltGi~~~~~gi~~~ 282 (366)
-+.+|.|.++++.+++.+.+--- ......-.||..+ |.-+.+.|.+..
T Consensus 196 ~~~~~~G~~~a~RR~~l~~iGGf-~~~~~~~~ED~~l-~~~i~~~G~~v~ 243 (373)
T TIGR03472 196 RARFCFGATMALRRATLEAIGGL-AALAHHLADDYWL-GELVRALGLRVV 243 (373)
T ss_pred CCccccChhhheeHHHHHHcCCh-HHhcccchHHHHH-HHHHHHcCCeEE
Confidence 13468899999999999988421 1112223599997 998888887654
No 21
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=94.04 E-value=2.1 Score=39.55 Aligned_cols=162 Identities=17% Similarity=0.094 Sum_probs=87.5
Q ss_pred CeeEEEEecCCCchhhhhHHHHhhhcCC--eEEecccCCCCchHHHHHHHHHHHHhhCCCcceEEEeCCCceechHHHHH
Q psy16851 114 DVAIAFVVGIGSDSGNQIVSEESNLYGD--IIQGNFVDSYDNLTLKTVAMMEWIHDYCPDTHFILKTDDDMFINVPKLLT 191 (366)
Q Consensus 114 ~v~v~FvlG~~~~~~~~~l~~E~~~y~D--Ii~~df~DsY~Nlt~Ktl~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~ 191 (366)
.+.++++-..+.+...+.+++-.+.|++ +....-.. |.. | -.+++.+.+.. +.+|++.+|+|..+.++.|..
T Consensus 40 ~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~---n~G-~-~~a~n~g~~~a-~g~~i~~lD~D~~~~~~~l~~ 113 (243)
T PLN02726 40 DFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPG---KLG-L-GTAYIHGLKHA-SGDFVVIMDADLSHHPKYLPS 113 (243)
T ss_pred CeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCC---CCC-H-HHHHHHHHHHc-CCCEEEEEcCCCCCCHHHHHH
Confidence 5677887776664444444443445553 22222111 222 1 13445555544 589999999999999988877
Q ss_pred HHHhcC-CCcceEeeeecCCC------cccccCCC---ceeeCCCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhcCCC
Q psy16851 192 FLVKHQ-NSKMTFFGRLAKKW------RPIRKSSS---KYYVSPVQYSPNMFPDFTTGPAYLFTSDVVSDVYTKALETTY 261 (366)
Q Consensus 192 ~L~~~~-~~~~~~~G~~~~~~------~P~R~~~s---kwyvs~~~yp~~~yP~Y~~G~gYvlS~d~~~~l~~~s~~~~~ 261 (366)
.+.... ..-..+.|...... ...|.-.+ .+.... .. .... +.++|+..++++++++.+...... .
T Consensus 114 l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~-~~~~-~d~~g~~~~~rr~~~~~i~~~~~~-~- 188 (243)
T PLN02726 114 FIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQT-LL-WPGV-SDLTGSFRLYKRSALEDLVSSVVS-K- 188 (243)
T ss_pred HHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHHH-Hh-CCCC-CcCCCcccceeHHHHHHHHhhccC-C-
Confidence 776542 23456677543211 01111000 010000 00 0011 235677889999999999643221 1
Q ss_pred CCCCchhhHHHHHHhCCCceeecCCc
Q psy16851 262 LKLEDVFTTGVVAQSLKIKRQHVNEF 287 (366)
Q Consensus 262 ~~~EDV~ltGi~~~~~gi~~~~~~~f 287 (366)
....|..+ .+.+...|.+....|.-
T Consensus 189 ~~~~~~el-~~~~~~~g~~i~~vp~~ 213 (243)
T PLN02726 189 GYVFQMEI-IVRASRKGYRIEEVPIT 213 (243)
T ss_pred CcEEehHH-HHHHHHcCCcEEEeCcE
Confidence 22346665 77777888877776643
No 22
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=93.71 E-value=0.41 Score=39.96 Aligned_cols=156 Identities=15% Similarity=0.072 Sum_probs=75.2
Q ss_pred EEEEEcCcCCHHHH-HHHHHHHhcccCCCCeeEEEEecCCCchhhhhHHHHhhhcCCeEEecccCCCCchHHHHHHHHHH
Q psy16851 86 LILITSALDHSEAR-SAIRQTWGHYNLRNDVAIAFVVGIGSDSGNQIVSEESNLYGDIIQGNFVDSYDNLTLKTVAMMEW 164 (366)
Q Consensus 86 li~V~Sap~~~~rR-~aIR~TW~~~~~~~~v~v~FvlG~~~~~~~~~l~~E~~~y~DIi~~df~DsY~Nlt~Ktl~~l~w 164 (366)
+|.+.-.+....+- +.+++. .....+++++-..+.+...+.+++-.+....+......+.. .+ -.++..
T Consensus 3 vip~~n~~~~l~~~l~sl~~q-----~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n~-g~----~~~~n~ 72 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQ-----TDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPENL-GF----SAARNR 72 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHH-----SGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCCS-HH----HHHHHH
T ss_pred EEEeeCCHHHHHHHHHHHhhc-----cCCCEEEEEeccccccccccccccccccccccccccccccc-cc----cccccc
Confidence 34444444555444 456666 12345677666666544444444444334455555544433 22 234445
Q ss_pred HHhhCCCcceEEEeCCCceechHHHHHHHHhcCC-CcceEeeeecCCCccc---ccCCC--ceeeC-C--CCCCCCCCCC
Q psy16851 165 IHDYCPDTHFILKTDDDMFINVPKLLTFLVKHQN-SKMTFFGRLAKKWRPI---RKSSS--KYYVS-P--VQYSPNMFPD 235 (366)
Q Consensus 165 ~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~~~-~~~~~~G~~~~~~~P~---R~~~s--kwyvs-~--~~yp~~~yP~ 235 (366)
+.++. ..+|++.+|||.++..+.|...++.... ....++|......... ..... .+... . .......--+
T Consensus 73 ~~~~a-~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (169)
T PF00535_consen 73 GIKHA-KGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWKIS 151 (169)
T ss_dssp HHHH---SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTTSS
T ss_pred ccccc-ceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCCcc
Confidence 55554 4679999999999998765555544322 2344555433211110 00000 00000 0 0000111225
Q ss_pred CCCCCcccccHHHHHHH
Q psy16851 236 FTTGPAYLFTSDVVSDV 252 (366)
Q Consensus 236 Y~~G~gYvlS~d~~~~l 252 (366)
++.|++.++++++.+++
T Consensus 152 ~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 152 FFIGSCALFRRSVFEEI 168 (169)
T ss_dssp EESSSCEEEEEHHHHHC
T ss_pred cccccEEEEEHHHHHhh
Confidence 77889999999998865
No 23
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=93.62 E-value=4.1 Score=38.94 Aligned_cols=164 Identities=10% Similarity=-0.010 Sum_probs=81.1
Q ss_pred eeEEEEecCCCchhhhhHHHH-hhh-cCCeEEecccCCCCchHHHHHHHHHHHHhhCCCcceEEEeCCCceechHHHHHH
Q psy16851 115 VAIAFVVGIGSDSGNQIVSEE-SNL-YGDIIQGNFVDSYDNLTLKTVAMMEWIHDYCPDTHFILKTDDDMFINVPKLLTF 192 (366)
Q Consensus 115 v~v~FvlG~~~~~~~~~l~~E-~~~-y~DIi~~df~DsY~Nlt~Ktl~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~ 192 (366)
..++.|-..+.+.....+.++ ... +..+-.+....+ .+.. .+...+.+.. ..+|++.+|+|+.+..+-|...
T Consensus 31 ~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n-~G~~----~a~N~g~~~A-~gd~i~fLD~D~~~~~~wL~~l 104 (299)
T cd02510 31 KEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKR-EGLI----RARIAGARAA-TGDVLVFLDSHCEVNVGWLEPL 104 (299)
T ss_pred CEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCC-CCHH----HHHHHHHHHc-cCCEEEEEeCCcccCccHHHHH
Confidence 467777666653332233221 222 233433332222 2222 3455555554 6899999999999987666666
Q ss_pred HHhcCCCcceEe-eeecCC---------Ccc-cccC-----CCceeeCCC-----CCC-CCCCCCCCCCCcccccHHHHH
Q psy16851 193 LVKHQNSKMTFF-GRLAKK---------WRP-IRKS-----SSKYYVSPV-----QYS-PNMFPDFTTGPAYLFTSDVVS 250 (366)
Q Consensus 193 L~~~~~~~~~~~-G~~~~~---------~~P-~R~~-----~skwyvs~~-----~yp-~~~yP~Y~~G~gYvlS~d~~~ 250 (366)
+.........++ |.+... ..+ .+.. ...|..... ..+ ....-+++.|+++++++++..
T Consensus 105 l~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~ 184 (299)
T cd02510 105 LARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERRRESPTAPIRSPTMAGGLFAIDREWFL 184 (299)
T ss_pred HHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHhhhcCCCCCccCccccceeeEEEHHHHH
Confidence 654322222222 221100 000 0000 001110000 001 112235678999999999999
Q ss_pred HHHHhhhcCCCCCCCchhhHHHHHHhCCCceeecC
Q psy16851 251 DVYTKALETTYLKLEDVFTTGVVAQSLKIKRQHVN 285 (366)
Q Consensus 251 ~l~~~s~~~~~~~~EDV~ltGi~~~~~gi~~~~~~ 285 (366)
.+---.........||+-+ ..=+..+|-+....+
T Consensus 185 ~vGgfDe~~~~~~~ED~Dl-~~R~~~~G~~i~~~p 218 (299)
T cd02510 185 ELGGYDEGMDIWGGENLEL-SFKVWQCGGSIEIVP 218 (299)
T ss_pred HhCCCCCcccccCchhHHH-HHHHHHcCCeEEEee
Confidence 8832111222334699987 666677787665544
No 24
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=93.53 E-value=1.6 Score=40.01 Aligned_cols=184 Identities=11% Similarity=0.039 Sum_probs=87.8
Q ss_pred eEEEEEEcCcCCHHHHHHHHHHHhcccCCCCeeEEEEecCCCchhhhhHHHHhhhcCCeEEecccCCCCchHHHHHHHHH
Q psy16851 84 KILILITSALDHSEARSAIRQTWGHYNLRNDVAIAFVVGIGSDSGNQIVSEESNLYGDIIQGNFVDSYDNLTLKTVAMME 163 (366)
Q Consensus 84 ~Lli~V~Sap~~~~rR~aIR~TW~~~~~~~~v~v~FvlG~~~~~~~~~l~~E~~~y~DIi~~df~DsY~Nlt~Ktl~~l~ 163 (366)
.+-|+|.+.-....-...|+.-..+........++++...+.+...+.+.+-.+. .+....-.+ |.. | ..++.
T Consensus 30 ~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~--~v~~i~~~~---~~g-~-~~a~n 102 (251)
T cd06439 30 TVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK--GVKLLRFPE---RRG-K-AAALN 102 (251)
T ss_pred EEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC--cEEEEEcCC---CCC-h-HHHHH
Confidence 4555555544333344556555554322222566666555543333333222222 233332222 222 3 23455
Q ss_pred HHHhhCCCcceEEEeCCCceechHHHHHHHHhcC-CCcceEeeeecCCCcc--cccCCCceeeCC--CCCC-CCCCCCCC
Q psy16851 164 WIHDYCPDTHFILKTDDDMFINVPKLLTFLVKHQ-NSKMTFFGRLAKKWRP--IRKSSSKYYVSP--VQYS-PNMFPDFT 237 (366)
Q Consensus 164 w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~~-~~~~~~~G~~~~~~~P--~R~~~skwyvs~--~~yp-~~~yP~Y~ 237 (366)
.+.+.. ..+|++.+|+|+.+..+-|.+.+.... +.-..+.|........ .+.....|.... ..+. ....+..+
T Consensus 103 ~gi~~a-~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (251)
T cd06439 103 RALALA-TGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKRAESRLGSTVGA 181 (251)
T ss_pred HHHHHc-CCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHHHHHHhcCCeeee
Confidence 566555 469999999999999777777776653 2223444543321110 000000000000 0000 00112345
Q ss_pred CCCcccccHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhCCCcee
Q psy16851 238 TGPAYLFTSDVVSDVYTKALETTYLKLEDVFTTGVVAQSLKIKRQ 282 (366)
Q Consensus 238 ~G~gYvlS~d~~~~l~~~s~~~~~~~~EDV~ltGi~~~~~gi~~~ 282 (366)
.|+++.+.+++.+. .......||..+ +..+...|....
T Consensus 182 ~g~~~~~rr~~~~~------~~~~~~~eD~~l-~~~~~~~G~~~~ 219 (251)
T cd06439 182 NGAIYAIRRELFRP------LPADTINDDFVL-PLRIARQGYRVV 219 (251)
T ss_pred cchHHHhHHHHhcC------CCcccchhHHHH-HHHHHHcCCeEE
Confidence 67777777776651 112234699886 777777775544
No 25
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=93.51 E-value=4.8 Score=36.15 Aligned_cols=116 Identities=12% Similarity=0.024 Sum_probs=64.1
Q ss_pred HHHHHhhCCCcceEEEeCCCceechHHHHHHHHhcCC-Cc-ceEeeeecC-CCcc----ccc--CCCceeeCCCCCCC-C
Q psy16851 162 MEWIHDYCPDTHFILKTDDDMFINVPKLLTFLVKHQN-SK-MTFFGRLAK-KWRP----IRK--SSSKYYVSPVQYSP-N 231 (366)
Q Consensus 162 l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~~~-~~-~~~~G~~~~-~~~P----~R~--~~skwyvs~~~yp~-~ 231 (366)
+..+.+.. +.+|++.+|+|+++..+.|...+..... .+ ....|.... ...+ .+. .....+...-.... .
T Consensus 76 ~n~~~~~a-~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (234)
T cd06421 76 LNNALAHT-TGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDR 154 (234)
T ss_pred HHHHHHhC-CCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555544 6899999999999999888887775533 22 223332211 1000 000 00000000000000 0
Q ss_pred CCCCCCCCCcccccHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhCCCcee
Q psy16851 232 MFPDFTTGPAYLFTSDVVSDVYTKALETTYLKLEDVFTTGVVAQSLKIKRQ 282 (366)
Q Consensus 232 ~yP~Y~~G~gYvlS~d~~~~l~~~s~~~~~~~~EDV~ltGi~~~~~gi~~~ 282 (366)
....++.|++.++++++.+.+.-- ......||..+ +.-+.+.|.+..
T Consensus 155 ~~~~~~~g~~~~~r~~~~~~ig~~---~~~~~~eD~~l-~~r~~~~g~~i~ 201 (234)
T cd06421 155 WGAAFCCGSGAVVRREALDEIGGF---PTDSVTEDLAT-SLRLHAKGWRSV 201 (234)
T ss_pred cCCceecCceeeEeHHHHHHhCCC---CccceeccHHH-HHHHHHcCceEE
Confidence 113567899999999999887321 12344799997 887777776543
No 26
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.38 E-value=3.2 Score=36.69 Aligned_cols=136 Identities=11% Similarity=-0.010 Sum_probs=73.7
Q ss_pred eeEEEEecCCCchhhhhHHHHhhhcCCeEEecccCCCCchHHHHHHHHHHHHhhCCCcceEEEeCCCceechHHHHHHHH
Q psy16851 115 VAIAFVVGIGSDSGNQIVSEESNLYGDIIQGNFVDSYDNLTLKTVAMMEWIHDYCPDTHFILKTDDDMFINVPKLLTFLV 194 (366)
Q Consensus 115 v~v~FvlG~~~~~~~~~l~~E~~~y~DIi~~df~DsY~Nlt~Ktl~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~ 194 (366)
.+++.+-+.+.+...+.+++..+.+. +....... ......-.-.+++++. ..+.+|++..|||..+..+.|...+.
T Consensus 27 ~eiiivD~~s~d~t~~~~~~~~~~~~-i~~~~~~~-n~g~~~~~n~~~~~a~--~~~~d~v~~ld~D~~~~~~~l~~l~~ 102 (202)
T cd04185 27 DHIIVIDNASTDGTAEWLTSLGDLDN-IVYLRLPE-NLGGAGGFYEGVRRAY--ELGYDWIWLMDDDAIPDPDALEKLLA 102 (202)
T ss_pred ceEEEEECCCCcchHHHHHHhcCCCc-eEEEECcc-ccchhhHHHHHHHHHh--ccCCCEEEEeCCCCCcChHHHHHHHH
Confidence 45555555554444444444443333 22222222 1122222234556665 24689999999999999877776665
Q ss_pred hcC-CCcceEeeeecCCCcccccCCCceeeCCCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhcCCCCCCCchhhHHHH
Q psy16851 195 KHQ-NSKMTFFGRLAKKWRPIRKSSSKYYVSPVQYSPNMFPDFTTGPAYLFTSDVVSDVYTKALETTYLKLEDVFTTGVV 273 (366)
Q Consensus 195 ~~~-~~~~~~~G~~~~~~~P~R~~~skwyvs~~~yp~~~yP~Y~~G~gYvlS~d~~~~l~~~s~~~~~~~~EDV~ltGi~ 273 (366)
... +.-..+.|..... .+ .++|.++++++++.+--. ...-....||+.+ +.-
T Consensus 103 ~~~~~~~~~~~~~~~~~-------~~------------------~~~~~~~~~~~~~~~g~~-~~~~~~~~eD~~~-~~r 155 (202)
T cd04185 103 YADKDNPQFLAPLVLDP-------DG------------------SFVGVLISRRVVEKIGLP-DKEFFIWGDDTEY-TLR 155 (202)
T ss_pred HHhcCCceEecceeEcC-------CC------------------ceEEEEEeHHHHHHhCCC-ChhhhccchHHHH-HHH
Confidence 543 2222333332211 00 335688999998877211 1111245699997 887
Q ss_pred HHhCCCce
Q psy16851 274 AQSLKIKR 281 (366)
Q Consensus 274 ~~~~gi~~ 281 (366)
+.+.|...
T Consensus 156 ~~~~G~~i 163 (202)
T cd04185 156 ASKAGPGI 163 (202)
T ss_pred HHHcCCcE
Confidence 87777655
No 27
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=93.36 E-value=2.1 Score=35.58 Aligned_cols=148 Identities=14% Similarity=0.054 Sum_probs=73.0
Q ss_pred HHHHHHHhcccCC--CCeeEEEEecCCCchhhhhHHHHhhhcCC-eEEecccCCCCchHHHHHHHHHHHHhhCCCcceEE
Q psy16851 100 SAIRQTWGHYNLR--NDVAIAFVVGIGSDSGNQIVSEESNLYGD-IIQGNFVDSYDNLTLKTVAMMEWIHDYCPDTHFIL 176 (366)
Q Consensus 100 ~aIR~TW~~~~~~--~~v~v~FvlG~~~~~~~~~l~~E~~~y~D-Ii~~df~DsY~Nlt~Ktl~~l~w~~~~c~~~~fvl 176 (366)
+.|++|-.+-... ....++.+-..+.+...+.+.++...+.. ++..... .|.. | ...+.++.+.+ +.+|++
T Consensus 10 ~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~---~~~g-~-~~~~n~~~~~~-~~~~i~ 83 (180)
T cd06423 10 AVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDK---ENGG-K-AGALNAGLRHA-KGDIVV 83 (180)
T ss_pred HHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEec---ccCC-c-hHHHHHHHHhc-CCCEEE
Confidence 4555555543222 24566666555554444445444444322 2222211 1211 1 34556666666 799999
Q ss_pred EeCCCceechHHHHHHHHhcC--CCcceEeeeecCCCc---ccccCC----CceeeCCCCC-CCCCCCCCCCCCcccccH
Q psy16851 177 KTDDDMFINVPKLLTFLVKHQ--NSKMTFFGRLAKKWR---PIRKSS----SKYYVSPVQY-SPNMFPDFTTGPAYLFTS 246 (366)
Q Consensus 177 K~DDD~fVn~~~L~~~L~~~~--~~~~~~~G~~~~~~~---P~R~~~----skwyvs~~~y-p~~~yP~Y~~G~gYvlS~ 246 (366)
.+|+|..+..+.|...+.... +.-..+.|....... ...... ..+....... ........+.|.++++++
T Consensus 84 ~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 163 (180)
T cd06423 84 VLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSALGGVLVLSGAFGAFRR 163 (180)
T ss_pred EECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhheecceeecCchHHHHHH
Confidence 999999998777777644432 222233333321110 110000 0001000000 112334567889999999
Q ss_pred HHHHHHH
Q psy16851 247 DVVSDVY 253 (366)
Q Consensus 247 d~~~~l~ 253 (366)
++++.+-
T Consensus 164 ~~~~~~g 170 (180)
T cd06423 164 EALREVG 170 (180)
T ss_pred HHHHHhC
Confidence 9998763
No 28
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.33 E-value=4.1 Score=35.25 Aligned_cols=121 Identities=10% Similarity=-0.059 Sum_probs=68.5
Q ss_pred HHHHHHHhhCCCcceEEEeCCCceechHHHHHHHHhc--CCCcceEeeeecCCCcccccCCCceeeCCCCCCCCCCCCCC
Q psy16851 160 AMMEWIHDYCPDTHFILKTDDDMFINVPKLLTFLVKH--QNSKMTFFGRLAKKWRPIRKSSSKYYVSPVQYSPNMFPDFT 237 (366)
Q Consensus 160 ~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~--~~~~~~~~G~~~~~~~P~R~~~skwyvs~~~yp~~~yP~Y~ 237 (366)
.+++.+.+.+ +.+|++.+|+|..+..+.+...+... .+...+++|........... ...+..............++
T Consensus 65 ~a~n~~~~~a-~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 142 (202)
T cd06433 65 DAMNKGIALA-TGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRV-IGRRRPPPFLDKFLLYGMPI 142 (202)
T ss_pred HHHHHHHHHc-CCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCc-ccCCCCcchhhhHHhhcCcc
Confidence 4556666766 68999999999999988888877332 23345666654321110000 01100001111111233566
Q ss_pred CCCcccccHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhCCCceeecC
Q psy16851 238 TGPAYLFTSDVVSDVYTKALETTYLKLEDVFTTGVVAQSLKIKRQHVN 285 (366)
Q Consensus 238 ~G~gYvlS~d~~~~l~~~s~~~~~~~~EDV~ltGi~~~~~gi~~~~~~ 285 (366)
.|++.++++++.+.+-. ....+...||..+ .+-+...|......+
T Consensus 143 ~~~~~~~~~~~~~~~~~--f~~~~~~~~D~~~-~~r~~~~g~~~~~~~ 187 (202)
T cd06433 143 CHQATFFRRSLFEKYGG--FDESYRIAADYDL-LLRLLLAGKIFKYLP 187 (202)
T ss_pred cCcceEEEHHHHHHhCC--CchhhCchhhHHH-HHHHHHcCCceEecc
Confidence 78889999999988742 1112334578876 666666676554433
No 29
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=92.70 E-value=3.8 Score=37.65 Aligned_cols=117 Identities=10% Similarity=0.071 Sum_probs=64.7
Q ss_pred HHHHHHHhhCCCcceEEEeCCCceechHHHHHHHHhcCC--CcceEee-eecCCCcccccCCCceeeC------C---CC
Q psy16851 160 AMMEWIHDYCPDTHFILKTDDDMFINVPKLLTFLVKHQN--SKMTFFG-RLAKKWRPIRKSSSKYYVS------P---VQ 227 (366)
Q Consensus 160 ~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~~~--~~~~~~G-~~~~~~~P~R~~~skwyvs------~---~~ 227 (366)
.+++.+.++. +.+|++.+|+|+.+..+.|.+.+..... .+-.+.| .+.....+. ....+.+.. . ..
T Consensus 74 ~a~n~g~~~a-~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 151 (241)
T cd06427 74 KACNYALAFA-RGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARE-NWLTRMFALEYAAWFDYLLPG 151 (241)
T ss_pred HHHHHHHHhc-CCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCc-cHHHHHHHHHHHHHHHHHHHH
Confidence 4566777765 6799999999999999988888776532 1222332 221110000 000000000 0 00
Q ss_pred CCCCCCCCCCCCCcccccHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhCCCcee
Q psy16851 228 YSPNMFPDFTTGPAYLFTSDVVSDVYTKALETTYLKLEDVFTTGVVAQSLKIKRQ 282 (366)
Q Consensus 228 yp~~~yP~Y~~G~gYvlS~d~~~~l~~~s~~~~~~~~EDV~ltGi~~~~~gi~~~ 282 (366)
......+..+.|++.++++++++.+.-. -+....||..+ ++=+...|.+..
T Consensus 152 ~~~~~~~~~~~g~~~~~rr~~~~~vgg~---~~~~~~eD~~l-~~rl~~~G~r~~ 202 (241)
T cd06427 152 LARLGLPIPLGGTSNHFRTDVLRELGGW---DPFNVTEDADL-GLRLARAGYRTG 202 (241)
T ss_pred HHhcCCeeecCCchHHhhHHHHHHcCCC---CcccchhhHHH-HHHHHHCCceEE
Confidence 0001222345788899999999887321 12234799997 776666665544
No 30
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=92.20 E-value=3.3 Score=37.35 Aligned_cols=157 Identities=13% Similarity=0.028 Sum_probs=79.1
Q ss_pred CeeEEEEecCCCchhhhhHHHHhhhcCCeEEecccCCCCchHHHHHHHHHHHHhhCCCcceEEEeCCCceechHHHHHHH
Q psy16851 114 DVAIAFVVGIGSDSGNQIVSEESNLYGDIIQGNFVDSYDNLTLKTVAMMEWIHDYCPDTHFILKTDDDMFINVPKLLTFL 193 (366)
Q Consensus 114 ~v~v~FvlG~~~~~~~~~l~~E~~~y~DIi~~df~DsY~Nlt~Ktl~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L 193 (366)
..+++++...+.+...+.+ ++...+..+.... .+. .-|.- ++..+.+.. +.+|++.+|+|+.+..+.|...+
T Consensus 28 ~~eiivvdd~s~d~~~~~l-~~~~~~~~~~v~~-~~~----~g~~~-a~n~g~~~a-~~d~v~~lD~D~~~~~~~l~~l~ 99 (235)
T cd06434 28 PLEIIVVTDGDDEPYLSIL-SQTVKYGGIFVIT-VPH----PGKRR-ALAEGIRHV-TTDIVVLLDSDTVWPPNALPEML 99 (235)
T ss_pred CCEEEEEeCCCChHHHHHH-HhhccCCcEEEEe-cCC----CChHH-HHHHHHHHh-CCCEEEEECCCceeChhHHHHHH
Confidence 3466666666654433333 3455566665543 221 12332 334444443 78999999999999999888888
Q ss_pred HhcCCCc-ceEeeeecC-CC--cccccCCCceeeC-------CCCCCCCCCCCCCCCCcccccHHHHHHHHHhhh-----
Q psy16851 194 VKHQNSK-MTFFGRLAK-KW--RPIRKSSSKYYVS-------PVQYSPNMFPDFTTGPAYLFTSDVVSDVYTKAL----- 257 (366)
Q Consensus 194 ~~~~~~~-~~~~G~~~~-~~--~P~R~~~skwyvs-------~~~yp~~~yP~Y~~G~gYvlS~d~~~~l~~~s~----- 257 (366)
......+ ....|.... +. .+.... ...+.. ........ -..+.|++.++.+++++.+.-...
T Consensus 100 ~~~~~~~v~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~G~~~~~rr~~l~~~~~~~~~~~~~ 177 (235)
T cd06434 100 KPFEDPKVGGVGTNQRILRPRDSKWSFL-AAEYLERRNEEIRAAMSYDGG-VPCLSGRTAAYRTEILKDFLFLEEFTNET 177 (235)
T ss_pred HhccCCCEeEEcCceEeecCcccHHHHH-HHHHHHHHHHHHHHHHhhCCC-EEEccCcHHHHHHHHHhhhhhHHHhhhhh
Confidence 7664222 222222211 00 000000 000000 00000000 023567788889988877542211
Q ss_pred --cCCCCCCCchhhHHHHHHhCCCce
Q psy16851 258 --ETTYLKLEDVFTTGVVAQSLKIKR 281 (366)
Q Consensus 258 --~~~~~~~EDV~ltGi~~~~~gi~~ 281 (366)
..+...-||..+ +.-+.+.|.+.
T Consensus 178 ~~~~~~~~~eD~~l-~~~~~~~g~~~ 202 (235)
T cd06434 178 FMGRRLNAGDDRFL-TRYVLSHGYKT 202 (235)
T ss_pred hcCCCCCcCchHHH-HHHHHHCCCeE
Confidence 123456799997 55555555543
No 31
>PRK11204 N-glycosyltransferase; Provisional
Probab=91.21 E-value=14 Score=37.15 Aligned_cols=181 Identities=12% Similarity=0.055 Sum_probs=95.0
Q ss_pred ceEEEEEEcCcCCHHHHHHHHHHHhccc--CCCCeeEEEEecCCCchhhhhHHHHhhhcCCeEEecccCCCCchHHHHHH
Q psy16851 83 LKILILITSALDHSEARSAIRQTWGHYN--LRNDVAIAFVVGIGSDSGNQIVSEESNLYGDIIQGNFVDSYDNLTLKTVA 160 (366)
Q Consensus 83 ~~Lli~V~Sap~~~~rR~aIR~TW~~~~--~~~~v~v~FvlG~~~~~~~~~l~~E~~~y~DIi~~df~DsY~Nlt~Ktl~ 160 (366)
+.+-|+|.+--+. +.|++|-.+-. .....+++.+...+.+...+.+++.++.+..+......+ |.. | -.
T Consensus 54 p~vsViIp~yne~----~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~~---n~G-k-a~ 124 (420)
T PRK11204 54 PGVSILVPCYNEG----ENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIPRLRVIHLAE---NQG-K-AN 124 (420)
T ss_pred CCEEEEEecCCCH----HHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCCcEEEEEcCC---CCC-H-HH
Confidence 3455555554332 33444443321 122455555544444444455555566666665544332 332 4 34
Q ss_pred HHHHHHhhCCCcceEEEeCCCceechHHHHHHHHhc--CCCcceEeeeecCCCcccccCCCceeeC--CCCCCC------
Q psy16851 161 MMEWIHDYCPDTHFILKTDDDMFINVPKLLTFLVKH--QNSKMTFFGRLAKKWRPIRKSSSKYYVS--PVQYSP------ 230 (366)
Q Consensus 161 ~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~--~~~~~~~~G~~~~~~~P~R~~~skwyvs--~~~yp~------ 230 (366)
+++.+.+.+ +.+|++..|+|+.+..+.|.+.++.. +++-....|.... ++..+ |.-. ..+|..
T Consensus 125 aln~g~~~a-~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~ 197 (420)
T PRK11204 125 ALNTGAAAA-RSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRI-----RNRST-LLGRIQVGEFSSIIGLIK 197 (420)
T ss_pred HHHHHHHHc-CCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCcee-----ccchh-HHHHHHHHHHHHhhhHHH
Confidence 566677765 78999999999999998888777654 2222222232111 11100 0000 000000
Q ss_pred ---CC--CCCCCCCCcccccHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhCCCceee
Q psy16851 231 ---NM--FPDFTTGPAYLFTSDVVSDVYTKALETTYLKLEDVFTTGVVAQSLKIKRQH 283 (366)
Q Consensus 231 ---~~--yP~Y~~G~gYvlS~d~~~~l~~~s~~~~~~~~EDV~ltGi~~~~~gi~~~~ 283 (366)
.. .+..++|.+.++++++++.+-- ..+..-.||+.+ +.-+.+.|.+...
T Consensus 198 ~~~~~~~~~~~~~G~~~~~rr~~l~~vgg---~~~~~~~ED~~l-~~rl~~~G~~i~~ 251 (420)
T PRK11204 198 RAQRVYGRVFTVSGVITAFRKSALHEVGY---WSTDMITEDIDI-SWKLQLRGWDIRY 251 (420)
T ss_pred HHHHHhCCceEecceeeeeeHHHHHHhCC---CCCCcccchHHH-HHHHHHcCCeEEe
Confidence 00 1123468888999999987621 112234699997 8888777765543
No 32
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=90.14 E-value=2.7 Score=36.49 Aligned_cols=133 Identities=15% Similarity=0.112 Sum_probs=71.7
Q ss_pred CeeEEEEecCCCchhhhhHHHHhhhcCCeEEecccCCCCchHHHHHHHHHHHHhhCCCcceEEEeCCCceechHHHHHHH
Q psy16851 114 DVAIAFVVGIGSDSGNQIVSEESNLYGDIIQGNFVDSYDNLTLKTVAMMEWIHDYCPDTHFILKTDDDMFINVPKLLTFL 193 (366)
Q Consensus 114 ~v~v~FvlG~~~~~~~~~l~~E~~~y~DIi~~df~DsY~Nlt~Ktl~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L 193 (366)
.+.++.+-+.+.+...+.++...+++..+.......++. | -.+++.+.+.+ ..+|++.+|+|.....+.|...+
T Consensus 29 ~~eiivvdd~s~d~t~~~~~~~~~~~~~i~~i~~~~n~G----~-~~a~n~g~~~a-~~d~i~~~D~D~~~~~~~l~~l~ 102 (181)
T cd04187 29 DYEIIFVDDGSTDRTLEILRELAARDPRVKVIRLSRNFG----Q-QAALLAGLDHA-RGDAVITMDADLQDPPELIPEML 102 (181)
T ss_pred CeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEEecCCCC----c-HHHHHHHHHhc-CCCEEEEEeCCCCCCHHHHHHHH
Confidence 456676666665333333444444555555444433221 2 24445555555 46999999999999887777777
Q ss_pred HhcCCCcceEeeeecCCCcc-cccCCCcee--eCCCCCCCCCCCCCCCCCcccccHHHHHHHHH
Q psy16851 194 VKHQNSKMTFFGRLAKKWRP-IRKSSSKYY--VSPVQYSPNMFPDFTTGPAYLFTSDVVSDVYT 254 (366)
Q Consensus 194 ~~~~~~~~~~~G~~~~~~~P-~R~~~skwy--vs~~~yp~~~yP~Y~~G~gYvlS~d~~~~l~~ 254 (366)
..........+|.......+ .+.-.++.+ +..... ...-+...|+.+++++++++.+..
T Consensus 103 ~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~r~~~~~i~~ 164 (181)
T cd04187 103 AKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKLS--GVDIPDNGGDFRLMDRKVVDALLL 164 (181)
T ss_pred HHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHHc--CCCCCCCCCCEEEEcHHHHHHHHh
Confidence 65544456667765432211 000000000 000000 111134567788999999998863
No 33
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=90.09 E-value=0.5 Score=44.83 Aligned_cols=71 Identities=11% Similarity=0.066 Sum_probs=48.9
Q ss_pred CCCcccccHHHHHHHHHhhhc----CCCCCCCchhhHHHHHHhCCCceeecCCcccCCCCCCCC------ccCCeEEEec
Q psy16851 238 TGPAYLFTSDVVSDVYTKALE----TTYLKLEDVFTTGVVAQSLKIKRQHVNEFFNKRIPLNAC------TIKKGISIHM 307 (366)
Q Consensus 238 ~G~gYvlS~d~~~~l~~~s~~----~~~~~~EDV~ltGi~~~~~gi~~~~~~~f~~~~~~~~~c------~~~~~it~H~ 307 (366)
+|+|+.||..+|+.|.+.... .+.+.--|-.| ..|+.++|+..+..++|+...+.-+.- .....++.|+
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i-~~C~~~lgv~LT~e~g~hQ~Di~Gd~~G~~~a~~~~pl~SlHH 90 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRI-QACIAELGVPLTKEPGFHQMDIRGDPSGFLEAHPLAPLVSLHH 90 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHH-HHHHHHhCCCceecCCceeEeeccCcceeeecCCCCceeeeee
Confidence 688999999999999875332 34444456666 999999999999999997643221111 1124578887
Q ss_pred CC
Q psy16851 308 IK 309 (366)
Q Consensus 308 ~~ 309 (366)
.+
T Consensus 91 ~~ 92 (255)
T PF04646_consen 91 WD 92 (255)
T ss_pred hh
Confidence 63
No 34
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=89.70 E-value=15 Score=33.07 Aligned_cols=122 Identities=15% Similarity=0.049 Sum_probs=63.4
Q ss_pred HHHHHHHhhCCCcceEEEeCCCceechHHHHHHH--Hh-cC-CCcceEeeeecCC-Cccccc---CCCceeeCCCCCCCC
Q psy16851 160 AMMEWIHDYCPDTHFILKTDDDMFINVPKLLTFL--VK-HQ-NSKMTFFGRLAKK-WRPIRK---SSSKYYVSPVQYSPN 231 (366)
Q Consensus 160 ~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L--~~-~~-~~~~~~~G~~~~~-~~P~R~---~~skwyvs~~~yp~~ 231 (366)
.+++++... +++|++..|+|+.+..+.|...+ .. .. ...-..+|..... ...... ....|..........
T Consensus 66 ~g~~~a~~~--~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (237)
T cd02526 66 IGIKAALEN--GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEE 143 (237)
T ss_pred HHHHHHHhC--CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecccccC
Confidence 344544432 58999999999999988888774 22 21 1122333332211 110000 000111000001011
Q ss_pred C--CCCCCCCCcccccHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhCCCceeecC
Q psy16851 232 M--FPDFTTGPAYLFTSDVVSDVYTKALETTYLKLEDVFTTGVVAQSLKIKRQHVN 285 (366)
Q Consensus 232 ~--yP~Y~~G~gYvlS~d~~~~l~~~s~~~~~~~~EDV~ltGi~~~~~gi~~~~~~ 285 (366)
. -..++.|+|.++++++.+.+---... -....||+.+ ++-+.+.|.+....+
T Consensus 144 ~~~~~~~~~~~~~~~rr~~~~~~ggfd~~-~~~~~eD~d~-~~r~~~~G~~~~~~~ 197 (237)
T cd02526 144 GLKEVDFLITSGSLISLEALEKVGGFDED-LFIDYVDTEW-CLRARSKGYKIYVVP 197 (237)
T ss_pred CceEeeeeeccceEEcHHHHHHhCCCCHH-HcCccchHHH-HHHHHHcCCcEEEEc
Confidence 1 12355678889999998887311111 1245689997 777778887665544
No 35
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=88.42 E-value=0.85 Score=40.74 Aligned_cols=125 Identities=12% Similarity=0.077 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhhCCCcceEEEeCCCceechHHHHHHHHhcCC-CcceEeeeecCCCcccccCCC---ceeeC--CCCCC
Q psy16851 156 LKTVAMMEWIHDYCPDTHFILKTDDDMFINVPKLLTFLVKHQN-SKMTFFGRLAKKWRPIRKSSS---KYYVS--PVQYS 229 (366)
Q Consensus 156 ~Ktl~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~~~-~~~~~~G~~~~~~~P~R~~~s---kwyvs--~~~yp 229 (366)
-|.-.+...+.+. .+.++++..|+|+.|+.+-|.+.+..... .-.+.-| +... .|.+.-.+ .-++. ...+.
T Consensus 17 ~Kv~nL~~~~~~~-a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~-~~~~-~~~~~~~~~l~~~~~~~~~~~~~ 93 (175)
T PF13506_consen 17 PKVNNLAQGLEAG-AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTG-LPRG-VPARGFWSRLEAAFFNFLPGVLQ 93 (175)
T ss_pred hHHHHHHHHHHhh-CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEe-cccc-cCCcCHHHHHHHHHHhHHHHHHH
Confidence 4655555544432 47899999999999999988888776543 3233323 2211 11111000 00110 00000
Q ss_pred CCCCCCCCCCCcccccHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhCCCceeecC
Q psy16851 230 PNMFPDFTTGPAYLFTSDVVSDVYTKALETTYLKLEDVFTTGVVAQSLKIKRQHVN 285 (366)
Q Consensus 230 ~~~yP~Y~~G~gYvlS~d~~~~l~~~s~~~~~~~~EDV~ltGi~~~~~gi~~~~~~ 285 (366)
.-.-.+++.|+.+++.+++++.+- ........--||..+ |..+.+.|.+..-.+
T Consensus 94 a~~~~~~~~G~~m~~rr~~L~~~G-G~~~l~~~ladD~~l-~~~~~~~G~~v~~~~ 147 (175)
T PF13506_consen 94 ALGGAPFAWGGSMAFRREALEEIG-GFEALADYLADDYAL-GRRLRARGYRVVLSP 147 (175)
T ss_pred HhcCCCceecceeeeEHHHHHHcc-cHHHHhhhhhHHHHH-HHHHHHCCCeEEEcc
Confidence 011347899999999999999872 111122345899997 999999898766544
No 36
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=87.99 E-value=16 Score=31.28 Aligned_cols=97 Identities=10% Similarity=0.003 Sum_probs=58.2
Q ss_pred HHHHHHhhCCCcceEEEeCCCceechHHHHHHHHhcCCCcceEeeeecCCCcccccCCCceeeCCCCCCCCCCCCCCCCC
Q psy16851 161 MMEWIHDYCPDTHFILKTDDDMFINVPKLLTFLVKHQNSKMTFFGRLAKKWRPIRKSSSKYYVSPVQYSPNMFPDFTTGP 240 (366)
Q Consensus 161 ~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~~~G~~~~~~~P~R~~~skwyvs~~~yp~~~yP~Y~~G~ 240 (366)
+++.+.+.+ ..+|++..|+|..+..+-|...++...+ ...+.|.......+.. . ....|+
T Consensus 70 ~~n~g~~~a-~g~~i~~lD~D~~~~~~~l~~~~~~~~~-~~~v~g~~~~~~~~~~----~--------------~~~~~~ 129 (182)
T cd06420 70 IRNKAIAAA-KGDYLIFIDGDCIPHPDFIADHIELAEP-GVFLSGSRVLLNEKLT----E--------------RGIRGC 129 (182)
T ss_pred HHHHHHHHh-cCCEEEEEcCCcccCHHHHHHHHHHhCC-CcEEecceeecccccc----e--------------eEeccc
Confidence 345555554 6899999999999988877777766532 3344443321111100 0 244677
Q ss_pred cccccHHHHHHHHHhhhcCCC--CCCCchhhHHHHHHhCCCc
Q psy16851 241 AYLFTSDVVSDVYTKALETTY--LKLEDVFTTGVVAQSLKIK 280 (366)
Q Consensus 241 gYvlS~d~~~~l~~~s~~~~~--~~~EDV~ltGi~~~~~gi~ 280 (366)
++.+.++....+. .....+ ...||+.+ +.=+.+.|+.
T Consensus 130 ~~~~~r~~~~~~g--gf~~~~~~~~~eD~~l-~~r~~~~g~~ 168 (182)
T cd06420 130 NMSFWKKDLLAVN--GFDEEFTGWGGEDSEL-VARLLNSGIK 168 (182)
T ss_pred eEEEEHHHHHHhC--CCCcccccCCcchHHH-HHHHHHcCCc
Confidence 8888888877542 122222 24799987 7767777743
No 37
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=87.63 E-value=18 Score=36.96 Aligned_cols=76 Identities=12% Similarity=0.184 Sum_probs=45.0
Q ss_pred eeEEEEecCCCchhhhhHHHHhhhcCCeEEecccCCCCchHHHHHHHHHHHHhhCCCcceEEEeCCCceechHHHHHHHH
Q psy16851 115 VAIAFVVGIGSDSGNQIVSEESNLYGDIIQGNFVDSYDNLTLKTVAMMEWIHDYCPDTHFILKTDDDMFINVPKLLTFLV 194 (366)
Q Consensus 115 v~v~FvlG~~~~~~~~~l~~E~~~y~DIi~~df~DsY~Nlt~Ktl~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~ 194 (366)
+.++.+-+.+.++..+.+++-.+.+..+... ..+. | .-| -.+++++.+++ +.+|++.+|+|..+..+.|.+.+.
T Consensus 81 ~eIiVVDd~StD~T~~il~~~~~~~~~v~v~-~~~~--~-~Gk-a~AlN~gl~~s-~g~~v~~~DaD~~~~~d~L~~l~~ 154 (439)
T TIGR03111 81 IDIILANNQSTDDSFQVFCRAQNEFPGLSLR-YMNS--D-QGK-AKALNAAIYNS-IGKYIIHIDSDGKLHKDAIKNMVT 154 (439)
T ss_pred eEEEEEECCCChhHHHHHHHHHHhCCCeEEE-EeCC--C-CCH-HHHHHHHHHHc-cCCEEEEECCCCCcChHHHHHHHH
Confidence 5555555554443333333333445544221 1222 2 124 34567777765 689999999999999988888776
Q ss_pred hc
Q psy16851 195 KH 196 (366)
Q Consensus 195 ~~ 196 (366)
..
T Consensus 155 ~f 156 (439)
T TIGR03111 155 RF 156 (439)
T ss_pred HH
Confidence 54
No 38
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=87.57 E-value=6.4 Score=35.17 Aligned_cols=160 Identities=15% Similarity=0.036 Sum_probs=86.5
Q ss_pred CeeEEEEecCCCchhhhhHHHHhhhcCCe-EEecccCCCCchHHHHHHHHHHHHhhCCCcceEEEeCCCceechHHHHHH
Q psy16851 114 DVAIAFVVGIGSDSGNQIVSEESNLYGDI-IQGNFVDSYDNLTLKTVAMMEWIHDYCPDTHFILKTDDDMFINVPKLLTF 192 (366)
Q Consensus 114 ~v~v~FvlG~~~~~~~~~l~~E~~~y~DI-i~~df~DsY~Nlt~Ktl~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~ 192 (366)
..+++.+-+.+.+...+.+++..+.++.. ....... |.. |. .++..+.+.+ ..+|++.+|+|.....+.+...
T Consensus 30 ~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~---n~G-~~-~a~~~g~~~a-~gd~i~~ld~D~~~~~~~l~~l 103 (211)
T cd04188 30 SYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPK---NRG-KG-GAVRAGMLAA-RGDYILFADADLATPFEELEKL 103 (211)
T ss_pred CEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEccc---CCC-cH-HHHHHHHHHh-cCCEEEEEeCCCCCCHHHHHHH
Confidence 46777776666644445555555666654 2233222 221 21 3444455555 5699999999999999988888
Q ss_pred HHh-cCCCcceEeeeecCCC-------cccccCCCcee--eCCCCCCCCCCCCC--CCCCcccccHHHHHHHHHhhhcCC
Q psy16851 193 LVK-HQNSKMTFFGRLAKKW-------RPIRKSSSKYY--VSPVQYSPNMFPDF--TTGPAYLFTSDVVSDVYTKALETT 260 (366)
Q Consensus 193 L~~-~~~~~~~~~G~~~~~~-------~P~R~~~skwy--vs~~~yp~~~yP~Y--~~G~gYvlS~d~~~~l~~~s~~~~ 260 (366)
++. ........+|...... ...|.-.++.+ ...-. .-+++ +..+..++++.+++.+..... ..
T Consensus 104 ~~~~~~~~~~~v~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~~~g~~~~~r~~~~~~~~~~~-~~ 178 (211)
T cd04188 104 EEALKTSGYDIAIGSRAHLASAAVVKRSWLRNLLGRGFNFLVRLL----LGLGIKDTQCGFKLFTRDAARRLFPRLH-LE 178 (211)
T ss_pred HHHHhccCCcEEEEEeeccCCcccccccHHHHHHHHHHHHHHHHH----cCCCCcccccCceeEcHHHHHHHHhhhh-cc
Confidence 876 3344466777644221 01111000000 00000 00112 133568999999999863321 22
Q ss_pred CCCCCchhhHHHHHHhCCCceeecCC
Q psy16851 261 YLKLEDVFTTGVVAQSLKIKRQHVNE 286 (366)
Q Consensus 261 ~~~~EDV~ltGi~~~~~gi~~~~~~~ 286 (366)
. ..+|..+ -..+.+.|.+...++-
T Consensus 179 ~-~~~d~el-~~r~~~~g~~~~~vpi 202 (211)
T cd04188 179 R-WAFDVEL-LVLARRLGYPIEEVPV 202 (211)
T ss_pred c-eEeeHHH-HHHHHHcCCeEEEcCc
Confidence 2 3458886 5556667876666653
No 39
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=87.56 E-value=23 Score=36.16 Aligned_cols=152 Identities=13% Similarity=0.099 Sum_probs=84.4
Q ss_pred CeeEEEEecCCCchhhhhHHHHhhhcCCeEEecccCCCCchHHHHHHHHHHHHhhCCCcceEEEeCCCceechHHHHHHH
Q psy16851 114 DVAIAFVVGIGSDSGNQIVSEESNLYGDIIQGNFVDSYDNLTLKTVAMMEWIHDYCPDTHFILKTDDDMFINVPKLLTFL 193 (366)
Q Consensus 114 ~v~v~FvlG~~~~~~~~~l~~E~~~y~DIi~~df~DsY~Nlt~Ktl~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L 193 (366)
+.+++.+...+.+...+.+++..+.+..+....... |.. | -.+++.+.+.+ +.+|++..|+|+.+..+.|...+
T Consensus 104 ~~eIivVdDgs~D~t~~~~~~~~~~~~~v~vv~~~~---n~G-k-a~AlN~gl~~a-~~d~iv~lDAD~~~~~d~L~~lv 177 (444)
T PRK14583 104 NIEVIAINDGSSDDTAQVLDALLAEDPRLRVIHLAH---NQG-K-AIALRMGAAAA-RSEYLVCIDGDALLDKNAVPYLV 177 (444)
T ss_pred CeEEEEEECCCCccHHHHHHHHHHhCCCEEEEEeCC---CCC-H-HHHHHHHHHhC-CCCEEEEECCCCCcCHHHHHHHH
Confidence 567666665555444445555556666654433222 322 4 34566666665 68999999999999999888777
Q ss_pred Hhc--CCCcceEeeeecCCCcccccCCC---ceeeCCCCCCC---------CCC-CC-CCCCCcccccHHHHHHHHHhhh
Q psy16851 194 VKH--QNSKMTFFGRLAKKWRPIRKSSS---KYYVSPVQYSP---------NMF-PD-FTTGPAYLFTSDVVSDVYTKAL 257 (366)
Q Consensus 194 ~~~--~~~~~~~~G~~~~~~~P~R~~~s---kwyvs~~~yp~---------~~y-P~-Y~~G~gYvlS~d~~~~l~~~s~ 257 (366)
... +++-...-|... .++..+ +... .+|.. ..| +. .++|.+..+.+++++++--..
T Consensus 178 ~~~~~~~~~g~v~g~~~-----~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~g~~~~~sG~~~~~rr~al~~vGg~~- 249 (444)
T PRK14583 178 APLIANPRTGAVTGNPR-----IRTRSTLIGRVQV--GEFSSIIGLIKRTQRVYGQVFTVSGVVAAFRRRALADVGYWS- 249 (444)
T ss_pred HHHHhCCCeEEEEccce-----ecCCCcchhhHHH--HHHHHHHHHHHHHHHHhCCceEecCceeEEEHHHHHHcCCCC-
Confidence 643 222222333211 111110 0000 00000 001 12 346778899999988873211
Q ss_pred cCCCCCCCchhhHHHHHHhCCCcee
Q psy16851 258 ETTYLKLEDVFTTGVVAQSLKIKRQ 282 (366)
Q Consensus 258 ~~~~~~~EDV~ltGi~~~~~gi~~~ 282 (366)
+..-.||..+ |+-+...|.+..
T Consensus 250 --~~~i~ED~dl-~~rl~~~G~~i~ 271 (444)
T PRK14583 250 --PDMITEDIDI-SWKLQLKHWSVF 271 (444)
T ss_pred --CCcccccHHH-HHHHHHcCCeEE
Confidence 2234699997 988887776543
No 40
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=86.89 E-value=5.8 Score=34.17 Aligned_cols=131 Identities=14% Similarity=0.080 Sum_probs=70.1
Q ss_pred eeEEEEecCCCchhhhhHHHHhhhcCCeEEecccCCCCchHHHHHHHHHHHHhhCCCcceEEEeCCCceechHHHHHHHH
Q psy16851 115 VAIAFVVGIGSDSGNQIVSEESNLYGDIIQGNFVDSYDNLTLKTVAMMEWIHDYCPDTHFILKTDDDMFINVPKLLTFLV 194 (366)
Q Consensus 115 v~v~FvlG~~~~~~~~~l~~E~~~y~DIi~~df~DsY~Nlt~Ktl~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~ 194 (366)
..++.+...+.+...+.+..-.+.+..+.......+.. | -.++..+.+.. ..+|++.+|+|..+..+.|.+.+.
T Consensus 29 ~eiivvd~~s~d~~~~~~~~~~~~~~~~~~~~~~~n~G----~-~~a~n~g~~~a-~gd~i~~lD~D~~~~~~~l~~l~~ 102 (185)
T cd04179 29 YEIIVVDDGSTDGTAEIARELAARVPRVRVIRLSRNFG----K-GAAVRAGFKAA-RGDIVVTMDADLQHPPEDIPKLLE 102 (185)
T ss_pred EEEEEEcCCCCCChHHHHHHHHHhCCCeEEEEccCCCC----c-cHHHHHHHHHh-cCCEEEEEeCCCCCCHHHHHHHHH
Confidence 45565555554444444555555566654444444332 1 23445555544 459999999999999888888887
Q ss_pred h-cCCCcceEeeeecCCC----cc-cccCCCceeeC--CCCCCCCCCCCCCCCCcccccHHHHHHHH
Q psy16851 195 K-HQNSKMTFFGRLAKKW----RP-IRKSSSKYYVS--PVQYSPNMFPDFTTGPAYLFTSDVVSDVY 253 (366)
Q Consensus 195 ~-~~~~~~~~~G~~~~~~----~P-~R~~~skwyvs--~~~yp~~~yP~Y~~G~gYvlS~d~~~~l~ 253 (366)
. .......+.|...... .+ .+.- ..+... .... ...-.....|+.+++++++++.+.
T Consensus 103 ~~~~~~~~~v~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 103 KLLEGGADVVIGSRFVRGGGAGMPLLRRL-GSRLFNFLIRLL-LGVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred HHhccCCcEEEEEeecCCCcccchHHHHH-HHHHHHHHHHHH-cCCCCcCCCCceeeeHHHHHHHHH
Confidence 5 3444566777643221 11 1100 000000 0000 001113446677889999999985
No 41
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=85.71 E-value=19 Score=31.50 Aligned_cols=156 Identities=10% Similarity=-0.026 Sum_probs=76.3
Q ss_pred eeEEEEecCC-CchhhhhHHHHhhhcCCeEEecccCCCCchHHHHHHHHHHHHhhCCCcceEEEeCCCceechHHHHHHH
Q psy16851 115 VAIAFVVGIG-SDSGNQIVSEESNLYGDIIQGNFVDSYDNLTLKTVAMMEWIHDYCPDTHFILKTDDDMFINVPKLLTFL 193 (366)
Q Consensus 115 v~v~FvlG~~-~~~~~~~l~~E~~~y~DIi~~df~DsY~Nlt~Ktl~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L 193 (366)
..++++.-.+ .+...+.+.+-.+.+. +....... |.- + -.++..+...+ +.+|++.+|+|.++..+.|...+
T Consensus 30 ~eiiivdd~ss~d~t~~~~~~~~~~~~-i~~i~~~~---n~G-~-~~a~N~g~~~a-~gd~i~~lD~Dd~~~~~~l~~~~ 102 (201)
T cd04195 30 DEVVLVKDGPVTQSLNEVLEEFKRKLP-LKVVPLEK---NRG-L-GKALNEGLKHC-TYDWVARMDTDDISLPDRFEKQL 102 (201)
T ss_pred cEEEEEECCCCchhHHHHHHHHHhcCC-eEEEEcCc---ccc-H-HHHHHHHHHhc-CCCEEEEeCCccccCcHHHHHHH
Confidence 4555554333 2444433444344455 44333322 211 1 12455566655 68999999999999988887777
Q ss_pred HhcC--CCcceEeeeecCCCcccccCCCceeeCCC-----CCCCCCCCCCCCCCcccccHHHHHHHHHhhhcCCCCCCCc
Q psy16851 194 VKHQ--NSKMTFFGRLAKKWRPIRKSSSKYYVSPV-----QYSPNMFPDFTTGPAYLFTSDVVSDVYTKALETTYLKLED 266 (366)
Q Consensus 194 ~~~~--~~~~~~~G~~~~~~~P~R~~~skwyvs~~-----~yp~~~yP~Y~~G~gYvlS~d~~~~l~~~s~~~~~~~~ED 266 (366)
.... +.-.++.|.........+....+. .+.. .+.... ....|++.++.+++++.+-- ..+....||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~rr~~~~~~g~---~~~~~~~eD 176 (201)
T cd04195 103 DFIEKNPEIDIVGGGVLEFDSDGNDIGKRR-LPTSHDDILKFARRR--SPFNHPTVMFRKSKVLAVGG---YQDLPLVED 176 (201)
T ss_pred HHHHhCCCeEEEcccEEEECCCCCeecccc-CCCCHHHHHHHhccC--CCCCChHHhhhHHHHHHcCC---cCCCCCchH
Confidence 6532 222344443321100000000000 0000 000000 11245667777777766521 112356899
Q ss_pred hhhHHHHHHhCCCceeec
Q psy16851 267 VFTTGVVAQSLKIKRQHV 284 (366)
Q Consensus 267 V~ltGi~~~~~gi~~~~~ 284 (366)
..+ ..-+...|.+..+.
T Consensus 177 ~~~-~~r~~~~g~~~~~~ 193 (201)
T cd04195 177 YAL-WARMLANGARFANL 193 (201)
T ss_pred HHH-HHHHHHcCCceecc
Confidence 986 77777667655443
No 42
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=85.65 E-value=27 Score=31.48 Aligned_cols=160 Identities=10% Similarity=0.020 Sum_probs=81.4
Q ss_pred CeeEEEEecCCC-chhhhhHHHHhhhcC-CeEEecccCCCCchHHHHHHHHHHHHhhCC-CcceEEEeCCCceechHHHH
Q psy16851 114 DVAIAFVVGIGS-DSGNQIVSEESNLYG-DIIQGNFVDSYDNLTLKTVAMMEWIHDYCP-DTHFILKTDDDMFINVPKLL 190 (366)
Q Consensus 114 ~v~v~FvlG~~~-~~~~~~l~~E~~~y~-DIi~~df~DsY~Nlt~Ktl~~l~w~~~~c~-~~~fvlK~DDD~fVn~~~L~ 190 (366)
..+++++-+.+. .+..+.+++=.+.++ ++...... .|...| ..++.++.+.+. +.+|++.+|+|+.+..+.|.
T Consensus 28 ~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~---~~~G~~-~~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~ 103 (236)
T cd06435 28 NFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVE---PLPGAK-AGALNYALERTAPDAEIIAVIDADYQVEPDWLK 103 (236)
T ss_pred CcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcC---CCCCCc-hHHHHHHHHhcCCCCCEEEEEcCCCCcCHHHHH
Confidence 456766665555 333222221112222 34333222 223323 345677777663 47999999999999998888
Q ss_pred HHHHhcCCCc-ceEeeeecC-C--CcccccCCCce-----eeC-CCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhcCC
Q psy16851 191 TFLVKHQNSK-MTFFGRLAK-K--WRPIRKSSSKY-----YVS-PVQYSPNMFPDFTTGPAYLFTSDVVSDVYTKALETT 260 (366)
Q Consensus 191 ~~L~~~~~~~-~~~~G~~~~-~--~~P~R~~~skw-----yvs-~~~yp~~~yP~Y~~G~gYvlS~d~~~~l~~~s~~~~ 260 (366)
+.+......+ .++.|.... . ..+... ...| +.+ ........ -.++.|++.++++++.+.+-- .. .
T Consensus 104 ~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~rr~~~~~iGg--f~-~ 178 (236)
T cd06435 104 RLVPIFDDPRVGFVQAPQDYRDGEESLFKR-MCYAEYKGFFDIGMVSRNERN-AIIQHGTMCLIRRSALDDVGG--WD-E 178 (236)
T ss_pred HHHHHhcCCCeeEEecCccccCCCccHHHH-HHhHHHHHHHHHHhccccccC-ceEEecceEEEEHHHHHHhCC--CC-C
Confidence 8877654222 222222111 0 001100 0001 000 00000000 125678889999999998732 11 2
Q ss_pred CCCCCchhhHHHHHHhCCCceee
Q psy16851 261 YLKLEDVFTTGVVAQSLKIKRQH 283 (366)
Q Consensus 261 ~~~~EDV~ltGi~~~~~gi~~~~ 283 (366)
.+..||.-+ +.=+.+.|.+...
T Consensus 179 ~~~~eD~dl-~~r~~~~G~~~~~ 200 (236)
T cd06435 179 WCITEDSEL-GLRMHEAGYIGVY 200 (236)
T ss_pred ccccchHHH-HHHHHHCCcEEEE
Confidence 235799997 7777777765443
No 43
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=85.64 E-value=35 Score=32.80 Aligned_cols=193 Identities=15% Similarity=0.116 Sum_probs=100.2
Q ss_pred eEEEEEEcCcCCHHHHHHHHHHHhcccCCCCeeEEEEecCCC-chhhhhHHHHhhhcCCeEEecccCCCCchHHHHHHHH
Q psy16851 84 KILILITSALDHSEARSAIRQTWGHYNLRNDVAIAFVVGIGS-DSGNQIVSEESNLYGDIIQGNFVDSYDNLTLKTVAMM 162 (366)
Q Consensus 84 ~Lli~V~Sap~~~~rR~aIR~TW~~~~~~~~v~v~FvlG~~~-~~~~~~l~~E~~~y~DIi~~df~DsY~Nlt~Ktl~~l 162 (366)
.+-++|.|-..-....+.++..=.+... ...++ ++-..+ +...+.+.... +.++..+...++..- ..=.-.++
T Consensus 4 ~i~~iiv~yn~~~~l~~~l~~l~~~~~~--~~~iv-~vDn~s~d~~~~~~~~~~--~~~v~~i~~~~NlG~-agg~n~g~ 77 (305)
T COG1216 4 KISIIIVTYNRGEDLVECLASLAAQTYP--DDVIV-VVDNGSTDGSLEALKARF--FPNVRLIENGENLGF-AGGFNRGI 77 (305)
T ss_pred ceEEEEEecCCHHHHHHHHHHHhcCCCC--CcEEE-EccCCCCCCCHHHHHhhc--CCcEEEEEcCCCccc-hhhhhHHH
Confidence 3444555443333444555544333221 22233 334333 33333333322 678876665554321 11111456
Q ss_pred HHHHhhCCCcceEEEeCCCceechHHHHHHHHhcCCC-cceEeeeecCC----Cccccc------CCCce-eeCCCCCCC
Q psy16851 163 EWIHDYCPDTHFILKTDDDMFINVPKLLTFLVKHQNS-KMTFFGRLAKK----WRPIRK------SSSKY-YVSPVQYSP 230 (366)
Q Consensus 163 ~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~-~~~~~G~~~~~----~~P~R~------~~skw-yvs~~~yp~ 230 (366)
+.+...- .+|++..++|+.+..+.|.+.++..... ...+.|..... ..+.+. ....| .....+.+.
T Consensus 78 ~~a~~~~--~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (305)
T COG1216 78 KYALAKG--DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLEIAP 155 (305)
T ss_pred HHHhcCC--CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheeccccccccccceecccccccc
Confidence 6665532 2299999999999988888888654322 23334433221 011110 01122 222222222
Q ss_pred C-----CCCCCCCCCcccccHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhCCCceeecCC
Q psy16851 231 N-----MFPDFTTGPAYLFTSDVVSDVYTKALETTYLKLEDVFTTGVVAQSLKIKRQHVNE 286 (366)
Q Consensus 231 ~-----~yP~Y~~G~gYvlS~d~~~~l~~~s~~~~~~~~EDV~ltGi~~~~~gi~~~~~~~ 286 (366)
. ..-+++.|++.++++++.+++-- ...--++..||+-+ +.=+.++|....-.+.
T Consensus 156 ~~~~~~~~~~~~~G~~~li~~~~~~~vG~-~de~~F~y~eD~D~-~~R~~~~G~~i~~~p~ 214 (305)
T COG1216 156 DLSSYLEVVASLSGACLLIRREAFEKVGG-FDERFFIYYEDVDL-CLRARKAGYKIYYVPD 214 (305)
T ss_pred cccchhhhhhhcceeeeEEcHHHHHHhCC-CCcccceeehHHHH-HHHHHHcCCeEEEeec
Confidence 1 12225789999999999999954 11222568999997 8888889976554443
No 44
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=85.13 E-value=2.5 Score=37.26 Aligned_cols=107 Identities=15% Similarity=0.078 Sum_probs=62.8
Q ss_pred eEEEeCCCceechHHHHHHHHhcC-CCcceEeeeecCCCcccccCCCceeeCCC---C---C---CCCCCCCCCCCCccc
Q psy16851 174 FILKTDDDMFINVPKLLTFLVKHQ-NSKMTFFGRLAKKWRPIRKSSSKYYVSPV---Q---Y---SPNMFPDFTTGPAYL 243 (366)
Q Consensus 174 fvlK~DDD~fVn~~~L~~~L~~~~-~~~~~~~G~~~~~~~P~R~~~skwyvs~~---~---y---p~~~yP~Y~~G~gYv 243 (366)
||+.+|+|+-+..+-|.+.+.... ++-...-|.+... +..+.-.++..... . . ..-..+.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFR--NRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEec--CCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 789999999999988888776654 2222333333221 10000011111110 0 0 012345678999999
Q ss_pred ccHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhCCCceeecC
Q psy16851 244 FTSDVVSDVYTKALETTYLKLEDVFTTGVVAQSLKIKRQHVN 285 (366)
Q Consensus 244 lS~d~~~~l~~~s~~~~~~~~EDV~ltGi~~~~~gi~~~~~~ 285 (366)
+++++++++.--. -+..-.||..+ |.=+.+.|.+....+
T Consensus 79 ~r~~~l~~vg~~~--~~~~~~ED~~l-~~~l~~~G~~~~~~~ 117 (193)
T PF13632_consen 79 FRREALREVGGFD--DPFSIGEDMDL-GFRLRRAGYRIVYVP 117 (193)
T ss_pred eeHHHHHHhCccc--ccccccchHHH-HHHHHHCCCEEEEec
Confidence 9999999884221 23455699997 888888886554433
No 45
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=84.97 E-value=27 Score=30.96 Aligned_cols=116 Identities=9% Similarity=-0.083 Sum_probs=60.0
Q ss_pred HHHHHhhCCCcceEEEeCCCceechHHHHHHHHh-cCCCcceEeeeecCCCcccccCCC----------ceeeCCCCCCC
Q psy16851 162 MEWIHDYCPDTHFILKTDDDMFINVPKLLTFLVK-HQNSKMTFFGRLAKKWRPIRKSSS----------KYYVSPVQYSP 230 (366)
Q Consensus 162 l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~-~~~~~~~~~G~~~~~~~P~R~~~s----------kwyvs~~~yp~ 230 (366)
+..+.+.. ..+|++.+|+|..+..+.|...++. ..+....+.|......... .... .++... ..
T Consensus 70 ~n~g~~~a-~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~-- 144 (224)
T cd06442 70 YIEGFKAA-RGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGV-EGWGLKRKLISRGANLLARL-LL-- 144 (224)
T ss_pred HHHHHHHc-CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCcc-CCCcHHHHHHHHHHHHHHHH-Hc--
Confidence 33444444 4699999999999998888887775 3344456666433211110 0000 000000 00
Q ss_pred CCCCCCCCCCcccccHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhCCCceeecC
Q psy16851 231 NMFPDFTTGPAYLFTSDVVSDVYTKALETTYLKLEDVFTTGVVAQSLKIKRQHVN 285 (366)
Q Consensus 231 ~~yP~Y~~G~gYvlS~d~~~~l~~~s~~~~~~~~EDV~ltGi~~~~~gi~~~~~~ 285 (366)
..-...+.|++.++++++++.+.. ........+|.-+ ..-+.+.|.+....+
T Consensus 145 ~~~~~~~~~~~~~~~r~~~~~ig~--~~~~~~~~~~~~l-~~~~~~~g~~i~~~p 196 (224)
T cd06442 145 GRKVSDPTSGFRAYRREVLEKLID--SLVSKGYKFQLEL-LVRARRLGYRIVEVP 196 (224)
T ss_pred CCCCCCCCCccchhhHHHHHHHhh--hccCCCcEEeHHH-HHHHHHcCCeEEEeC
Confidence 011235677888999999999871 1111111223333 444556665554433
No 46
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=83.76 E-value=23 Score=35.31 Aligned_cols=192 Identities=12% Similarity=0.069 Sum_probs=108.3
Q ss_pred ceEEEEEEcCcCCH-HHHHHHHHHHhcccCCCCeeEEEEecCCCchhhhhHHHHhhhcCCeEEecccCCCCchHHHHHHH
Q psy16851 83 LKILILITSALDHS-EARSAIRQTWGHYNLRNDVAIAFVVGIGSDSGNQIVSEESNLYGDIIQGNFVDSYDNLTLKTVAM 161 (366)
Q Consensus 83 ~~Lli~V~Sap~~~-~rR~aIR~TW~~~~~~~~v~v~FvlG~~~~~~~~~l~~E~~~y~DIi~~df~DsY~Nlt~Ktl~~ 161 (366)
+.+-|+|.+-.+.. --.+.++..=.+. ....+++.+...+.++.-+.+.+-.+.+++.+..... . .+...| ..+
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~d--yp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~-~-~~~~gK-~~a 128 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQD--YPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIYP-E-KKNGGK-AGA 128 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCC--CCCceEEEECCCCChhHHHHHHHHHhhcCcceEEEec-c-ccCccc-hHH
Confidence 45666666654443 2333333333221 2335677777766655555666666666544443311 0 122233 566
Q ss_pred HHHHHhhCCCcceEEEeCCCceechHHHHHHHHhcCCCcce-EeeeecCCCccc-ccCCCc----------eeeCCCCCC
Q psy16851 162 MEWIHDYCPDTHFILKTDDDMFINVPKLLTFLVKHQNSKMT-FFGRLAKKWRPI-RKSSSK----------YYVSPVQYS 229 (366)
Q Consensus 162 l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~-~~G~~~~~~~P~-R~~~sk----------wyvs~~~yp 229 (366)
+.++.... +.++++..|.|+.+..+.|.+.+......... +.|.......+. .+.-++ ++.-....
T Consensus 129 l~~~l~~~-~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~- 206 (439)
T COG1215 129 LNNGLKRA-KGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAAS- 206 (439)
T ss_pred HHHHHhhc-CCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhhhh-
Confidence 77887765 58999999999999999999988776433222 344321111000 000000 00000000
Q ss_pred CCCCCCCCCCCcccccHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhCCCceeecC
Q psy16851 230 PNMFPDFTTGPAYLFTSDVVSDVYTKALETTYLKLEDVFTTGVVAQSLKIKRQHVN 285 (366)
Q Consensus 230 ~~~yP~Y~~G~gYvlS~d~~~~l~~~s~~~~~~~~EDV~ltGi~~~~~gi~~~~~~ 285 (366)
....+..+.|++.++.+++++.+. ...+..--||..+ ++.++..|.+....+
T Consensus 207 ~~g~~~~~~G~~~~~rr~aL~~~g---~~~~~~i~ED~~l-t~~l~~~G~~~~~~~ 258 (439)
T COG1215 207 KGGLISFLSGSSSAFRRSALEEVG---GWLEDTITEDADL-TLRLHLRGYRVVYVP 258 (439)
T ss_pred hcCCeEEEcceeeeEEHHHHHHhC---CCCCCceeccHHH-HHHHHHCCCeEEEee
Confidence 012467889999999999999886 1223444699996 888887777655444
No 47
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=81.63 E-value=7.8 Score=36.52 Aligned_cols=122 Identities=12% Similarity=-0.023 Sum_probs=62.3
Q ss_pred HHHHHHHhhCCCcceEEEeCCCceechHHHHHHHHhcCCC--cceEeeeecCCC-cccccC---CCceeeCCC--CCCCC
Q psy16851 160 AMMEWIHDYCPDTHFILKTDDDMFINVPKLLTFLVKHQNS--KMTFFGRLAKKW-RPIRKS---SSKYYVSPV--QYSPN 231 (366)
Q Consensus 160 ~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~--~~~~~G~~~~~~-~P~R~~---~skwyvs~~--~yp~~ 231 (366)
.+++++.+. +++|++..|||+.+..+.|...+...... ...++|...... ...+.+ ...+..+.. ..+..
T Consensus 64 ~Gi~~a~~~--~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (281)
T TIGR01556 64 QGLDASFRR--GVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQISLDGLTT 141 (281)
T ss_pred HHHHHHHHC--CCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceeeecccccCC
Confidence 356666542 68999999999999977776666543221 233444322110 000000 000100000 00001
Q ss_pred CC-CCCCCCCcccccHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhCCCceeecC
Q psy16851 232 MF-PDFTTGPAYLFTSDVVSDVYTKALETTYLKLEDVFTTGVVAQSLKIKRQHVN 285 (366)
Q Consensus 232 ~y-P~Y~~G~gYvlS~d~~~~l~~~s~~~~~~~~EDV~ltGi~~~~~gi~~~~~~ 285 (366)
.. ..++.++|.++++++++.+---... -++..||+-+ .+=+.+.|.+..-.+
T Consensus 142 ~~~~~~~~~sg~li~~~~~~~iG~fde~-~fi~~~D~e~-~~R~~~~G~~i~~~~ 194 (281)
T TIGR01556 142 PQKTSFLISSGCLITREVYQRLGMMDEE-LFIDHVDTEW-SLRAQNYGIPLYIDP 194 (281)
T ss_pred ceeccEEEcCcceeeHHHHHHhCCccHh-hcccchHHHH-HHHHHHCCCEEEEeC
Confidence 11 1355667789999999887321111 1345689876 554566776554444
No 48
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=79.92 E-value=56 Score=31.04 Aligned_cols=166 Identities=11% Similarity=-0.040 Sum_probs=89.4
Q ss_pred CCCeeEEEEecCCCchhhhhHHHHhhhcCCe-E-EecccCCCCchHHHHHHHHHHHHhhCCCcceEEEeCCCceechHHH
Q psy16851 112 RNDVAIAFVVGIGSDSGNQIVSEESNLYGDI-I-QGNFVDSYDNLTLKTVAMMEWIHDYCPDTHFILKTDDDMFINVPKL 189 (366)
Q Consensus 112 ~~~v~v~FvlG~~~~~~~~~l~~E~~~y~DI-i-~~df~DsY~Nlt~Ktl~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L 189 (366)
..+++++++-+.+..+..+.|.+-.+.++-+ + ..+......+.+ .+..-+.+.+ +.++++.+|.|+++..+.+
T Consensus 32 ~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a----~arN~g~~~A-~~d~l~flD~D~i~~~~~i 106 (281)
T PF10111_consen 32 DPDFEIIVVDDGSSDEFDEELKKLCEKNGFIRYIRHEDNGEPFSRA----KARNIGAKYA-RGDYLIFLDADCIPSPDFI 106 (281)
T ss_pred CCCEEEEEEECCCchhHHHHHHHHHhccCceEEEEcCCCCCCcCHH----HHHHHHHHHc-CCCEEEEEcCCeeeCHHHH
Confidence 3467788877776655556677777777766 2 233222233433 3445556655 7999999999999999988
Q ss_pred HHHHH---hcCC-CcceEeeeecCCCcccc--cCC-C--ce--eeCCCCC--CCCCCC-CCCCCCcccccHHHHHHHHHh
Q psy16851 190 LTFLV---KHQN-SKMTFFGRLAKKWRPIR--KSS-S--KY--YVSPVQY--SPNMFP-DFTTGPAYLFTSDVVSDVYTK 255 (366)
Q Consensus 190 ~~~L~---~~~~-~~~~~~G~~~~~~~P~R--~~~-s--kw--yvs~~~y--p~~~yP-~Y~~G~gYvlS~d~~~~l~~~ 255 (366)
...+. .... ....+.+.......+.. ... . .| .+-.... ....+. ....|+..+++++.-..+-=-
T Consensus 107 ~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGGf 186 (281)
T PF10111_consen 107 EKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFISGKNSLWEFIAFASSCFLINREDFLEIGGF 186 (281)
T ss_pred HHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHhhccccccccccccceEEEEEHHHHHHhCCC
Confidence 88887 3322 22333332221111110 000 0 00 0000000 011111 123458899999988777321
Q ss_pred hhcCCCCCCCchhhHHHHHHhCCCceee
Q psy16851 256 ALETTYLKLEDVFTTGVVAQSLKIKRQH 283 (366)
Q Consensus 256 s~~~~~~~~EDV~ltGi~~~~~gi~~~~ 283 (366)
-........||.-+ +.=+.++|.....
T Consensus 187 DE~f~G~G~ED~D~-~~RL~~~~~~~~~ 213 (281)
T PF10111_consen 187 DERFRGWGYEDIDF-GYRLKKAGYKFKR 213 (281)
T ss_pred CccccCCCcchHHH-HHHHHHcCCcEec
Confidence 12222356899997 7667777765533
No 49
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=79.51 E-value=30 Score=27.58 Aligned_cols=82 Identities=12% Similarity=-0.061 Sum_probs=49.0
Q ss_pred HHHHHHhhCCCcceEEEeCCCceechHHHHHHHHhcC--CCcceEeeeecCCCcccccCCCceeeCCCCCCCCCCCCCCC
Q psy16851 161 MMEWIHDYCPDTHFILKTDDDMFINVPKLLTFLVKHQ--NSKMTFFGRLAKKWRPIRKSSSKYYVSPVQYSPNMFPDFTT 238 (366)
Q Consensus 161 ~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~~--~~~~~~~G~~~~~~~P~R~~~skwyvs~~~yp~~~yP~Y~~ 238 (366)
++..+.+.+ +.+|++.+|+|..+..+.+...+.... +......|.
T Consensus 68 ~~~~~~~~~-~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~~-------------------------------- 114 (156)
T cd00761 68 ARNAGLKAA-RGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP-------------------------------- 114 (156)
T ss_pred HHHHHHHHh-cCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEecc--------------------------------
Confidence 344455544 689999999999998888877643321 111122221
Q ss_pred CCcccccHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhCC
Q psy16851 239 GPAYLFTSDVVSDVYTKALETTYLKLEDVFTTGVVAQSLK 278 (366)
Q Consensus 239 G~gYvlS~d~~~~l~~~s~~~~~~~~EDV~ltGi~~~~~g 278 (366)
+++++++++.+.+....... ....||..+ +..+.+.|
T Consensus 115 -~~~~~~~~~~~~~~~~~~~~-~~~~ed~~~-~~~~~~~g 151 (156)
T cd00761 115 -GNLLFRRELLEEIGGFDEAL-LSGEEDDDF-LLRLLRGG 151 (156)
T ss_pred -chheeeHHHHHHhCCcchHh-cCCcchHHH-HHHHHhhc
Confidence 77999999988874322211 122677775 55554443
No 50
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=77.90 E-value=53 Score=29.59 Aligned_cols=109 Identities=14% Similarity=0.006 Sum_probs=57.7
Q ss_pred HHHHHHhhCCCcceEEEeCCCceechHHHHHHHHhcCCCc-ceEeeeecCCCcccccCCCceee-----------CCC--
Q psy16851 161 MMEWIHDYCPDTHFILKTDDDMFINVPKLLTFLVKHQNSK-MTFFGRLAKKWRPIRKSSSKYYV-----------SPV-- 226 (366)
Q Consensus 161 ~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~-~~~~G~~~~~~~P~R~~~skwyv-----------s~~-- 226 (366)
+++.+.+.. +.+|++.+|.|+.+..+.|...+......+ ..+.|.... .+....|.- ..+
T Consensus 78 a~n~g~~~a-~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (232)
T cd06437 78 ALAEGMKVA-KGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGH-----INANYSLLTRVQAMSLDYHFTIEQV 151 (232)
T ss_pred HHHHHHHhC-CCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceee-----EcCCCchhhHhhhhhHHhhhhHhHh
Confidence 456666665 789999999999999888888544332222 223332211 011111110 000
Q ss_pred -CCCCCCCCCCCCCCcccccHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhCCCc
Q psy16851 227 -QYSPNMFPDFTTGPAYLFTSDVVSDVYTKALETTYLKLEDVFTTGVVAQSLKIK 280 (366)
Q Consensus 227 -~yp~~~yP~Y~~G~gYvlS~d~~~~l~~~s~~~~~~~~EDV~ltGi~~~~~gi~ 280 (366)
.+....+ ..+.|++-++.+++++.+-- .. .....||+.+ +.-+...|.+
T Consensus 152 ~~~~~~~~-~~~~g~~~~~rr~~~~~vgg--~~-~~~~~ED~~l-~~rl~~~G~~ 201 (232)
T cd06437 152 ARSSTGLF-FNFNGTAGVWRKECIEDAGG--WN-HDTLTEDLDL-SYRAQLKGWK 201 (232)
T ss_pred hHhhcCCe-EEeccchhhhhHHHHHHhCC--CC-CCcchhhHHH-HHHHHHCCCe
Confidence 0000111 12356666788888877631 11 1234799997 6666655543
No 51
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=76.72 E-value=10 Score=37.15 Aligned_cols=157 Identities=11% Similarity=0.103 Sum_probs=80.5
Q ss_pred CeeEEEEecCCCchhhhhHHHHhhhcCC-eEEecccCCCCchHHHHHHHHHHHHhhCCCcceEEEeCCCceechHHHHHH
Q psy16851 114 DVAIAFVVGIGSDSGNQIVSEESNLYGD-IIQGNFVDSYDNLTLKTVAMMEWIHDYCPDTHFILKTDDDMFINVPKLLTF 192 (366)
Q Consensus 114 ~v~v~FvlG~~~~~~~~~l~~E~~~y~D-Ii~~df~DsY~Nlt~Ktl~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~ 192 (366)
...++++-..+.+...+.+++-++.+++ ++......++. |. .+++-+.+++ +.+|++.+|+|.-.+++.+.++
T Consensus 38 ~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G----~~-~A~~~G~~~A-~gd~vv~~DaD~q~~p~~i~~l 111 (325)
T PRK10714 38 EYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYG----QH-SAIMAGFSHV-TGDLIITLDADLQNPPEEIPRL 111 (325)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCC----HH-HHHHHHHHhC-CCCEEEEECCCCCCCHHHHHHH
Confidence 4678888777764333334333344444 44343333332 21 2333444444 6899999999999999988888
Q ss_pred HHhcCCCcceEeeeecC-CCcccccCCCceeeCC-CCCCCCCCCCCCCCCcccccHHHHHHHHHhhhcCCCCCCCchhhH
Q psy16851 193 LVKHQNSKMTFFGRLAK-KWRPIRKSSSKYYVSP-VQYSPNMFPDFTTGPAYLFTSDVVSDVYTKALETTYLKLEDVFTT 270 (366)
Q Consensus 193 L~~~~~~~~~~~G~~~~-~~~P~R~~~skwyvs~-~~yp~~~yP~Y~~G~gYvlS~d~~~~l~~~s~~~~~~~~EDV~lt 270 (366)
++.....-....|.... ...+.|.-.++.+--. .......++...+| .-++++++++.+...... ..++
T Consensus 112 ~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~~g~~~~d~~~g-fr~~~r~~~~~l~~~~~~-------~~~~- 182 (325)
T PRK10714 112 VAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDYGCM-LRAYRRHIVDAMLHCHER-------STFI- 182 (325)
T ss_pred HHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCcC-eEEEcHHHHHHHHHCCCC-------ccHH-
Confidence 87654323444454322 1223332222211000 00112223333332 248999999998532221 1233
Q ss_pred HHHHHhCCCceeecC
Q psy16851 271 GVVAQSLKIKRQHVN 285 (366)
Q Consensus 271 Gi~~~~~gi~~~~~~ 285 (366)
-.++...|.+....+
T Consensus 183 ~~l~~~~g~~i~evp 197 (325)
T PRK10714 183 PILANTFARRAIEIP 197 (325)
T ss_pred HHHHHHcCCCEEEEE
Confidence 344556676554444
No 52
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=74.46 E-value=57 Score=28.29 Aligned_cols=117 Identities=11% Similarity=0.081 Sum_probs=63.2
Q ss_pred HHHHHHhhCCCcceEEEeCCCceechHHHHHHHHhc--CCCcceEeeeecCCCcccccCCCceeeCC--CCCCCCC-CCC
Q psy16851 161 MMEWIHDYCPDTHFILKTDDDMFINVPKLLTFLVKH--QNSKMTFFGRLAKKWRPIRKSSSKYYVSP--VQYSPNM-FPD 235 (366)
Q Consensus 161 ~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~--~~~~~~~~G~~~~~~~P~R~~~skwyvs~--~~yp~~~-yP~ 235 (366)
++..+.+.. ..+|++.+|+|..+..+.|...++.. .+.-.+++|...... ..+..+-+. ..|.... +..
T Consensus 74 a~n~g~~~a-~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 147 (202)
T cd04184 74 ATNSALELA-TGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKID-----EGGKRSEPFFKPDWSPDLLLSQ 147 (202)
T ss_pred HHHHHHHhh-cCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhcc-----CCCCEeccccCCCCCHHHhhhc
Confidence 455555554 57999999999999988887777654 233344444322110 001111000 0111111 111
Q ss_pred CCCCCcccccHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhCCCceeecCC
Q psy16851 236 FTTGPAYLFTSDVVSDVYTKALETTYLKLEDVFTTGVVAQSLKIKRQHVNE 286 (366)
Q Consensus 236 Y~~G~gYvlS~d~~~~l~~~s~~~~~~~~EDV~ltGi~~~~~gi~~~~~~~ 286 (366)
=+.|++-++++++++.+-- ....+...||..+ +.=+.+.|.+..+.+.
T Consensus 148 ~~~~~~~~~~r~~~~~igg--f~~~~~~~eD~~l-~~rl~~~g~~~~~~~~ 195 (202)
T cd04184 148 NYIGHLLVYRRSLVRQVGG--FREGFEGAQDYDL-VLRVSEHTDRIAHIPR 195 (202)
T ss_pred CCccceEeEEHHHHHHhCC--CCcCcccchhHHH-HHHHHhccceEEEccH
Confidence 1234556788888877631 1222345799887 7766777776665553
No 53
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=71.36 E-value=69 Score=33.68 Aligned_cols=163 Identities=12% Similarity=0.002 Sum_probs=83.8
Q ss_pred CCeeEEEEecCCCchhhhhHHHHhhhcCCeEEecccCCCCchHHHHHHHHHHHHhh------C--CCcceEEEeCCCcee
Q psy16851 113 NDVAIAFVVGIGSDSGNQIVSEESNLYGDIIQGNFVDSYDNLTLKTVAMMEWIHDY------C--PDTHFILKTDDDMFI 184 (366)
Q Consensus 113 ~~v~v~FvlG~~~~~~~~~l~~E~~~y~DIi~~df~DsY~Nlt~Ktl~~l~w~~~~------c--~~~~fvlK~DDD~fV 184 (366)
.+.+++++...+.+...+.+++=++.|..+...- .+. .+-+-|.- .++|+.+. + .++++++..|-|..+
T Consensus 95 ~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv-~~~-~gp~~Ka~-aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v 171 (504)
T PRK14716 95 ENYRIFVGTYPNDPATLREVDRLAARYPRVHLVI-VPH-DGPTSKAD-CLNWIYQAIFAFERERGIRFAIIVLHDAEDVI 171 (504)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHCCCeEEEE-eCC-CCCCCHHH-HHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCc
Confidence 3455555553333332233332245576653222 121 12244643 45555432 2 246999999999999
Q ss_pred chHHHHHHHHhcCCCcceEeeeecCCCcccccCCCceeeCC---CCCCC---------C--CCCCCCCCCcccccHHHHH
Q psy16851 185 NVPKLLTFLVKHQNSKMTFFGRLAKKWRPIRKSSSKYYVSP---VQYSP---------N--MFPDFTTGPAYLFTSDVVS 250 (366)
Q Consensus 185 n~~~L~~~L~~~~~~~~~~~G~~~~~~~P~R~~~skwyvs~---~~yp~---------~--~yP~Y~~G~gYvlS~d~~~ 250 (366)
..+.|..+.. ..++...+-+.+.... ...+.| +.. .+|.. + .-+-.+.|.|+.+++++++
T Consensus 172 ~Pd~Lr~~~~-~~~~~~~VQ~pv~~~~----~~~~~~-~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe 245 (504)
T PRK14716 172 HPLELRLYNY-LLPRHDFVQLPVFSLP----RDWGEW-VAGTYMDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALE 245 (504)
T ss_pred CccHHHHHHh-hcCCCCEEecceeccC----CchhHH-HHHHHHHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHH
Confidence 9998876432 2222222111111000 011111 100 01110 0 0122467899999999999
Q ss_pred HHHHhhh---cCCCCCCCchhhHHHHHHhCCCceeecC
Q psy16851 251 DVYTKAL---ETTYLKLEDVFTTGVVAQSLKIKRQHVN 285 (366)
Q Consensus 251 ~l~~~s~---~~~~~~~EDV~ltGi~~~~~gi~~~~~~ 285 (366)
++..... -.+..--||.-+ |+-+...|.+....+
T Consensus 246 ~l~~~~GG~~fd~~sLTED~dL-glRL~~~G~rv~y~p 282 (504)
T PRK14716 246 RLAAERGGQPFDSDSLTEDYDI-GLRLKRAGFRQIFVR 282 (504)
T ss_pred HHHhhcCCCCCCCCCcchHHHH-HHHHHHCCCEEEEec
Confidence 9865322 112345799997 999999998876544
No 54
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=60.58 E-value=1.1e+02 Score=26.38 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=28.0
Q ss_pred CcceEEEeCCCceechHHHHHHHHhcCCCcceEeeee
Q psy16851 171 DTHFILKTDDDMFINVPKLLTFLVKHQNSKMTFFGRL 207 (366)
Q Consensus 171 ~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~~~G~~ 207 (366)
+.+|++.+|.|+.+.++.|...+.........+.|..
T Consensus 81 ~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~ 117 (183)
T cd06438 81 DPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYY 117 (183)
T ss_pred CCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEE
Confidence 5899999999999998888777766544344555654
No 55
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=58.49 E-value=1.2e+02 Score=28.71 Aligned_cols=189 Identities=7% Similarity=0.077 Sum_probs=92.5
Q ss_pred EEEEcCcCCHH-HHHHHHHHHhcc---cCCCCeeEEEEecCCC-chhhhh----HHHHhhhcCCeEEecccCCCCchHHH
Q psy16851 87 ILITSALDHSE-ARSAIRQTWGHY---NLRNDVAIAFVVGIGS-DSGNQI----VSEESNLYGDIIQGNFVDSYDNLTLK 157 (366)
Q Consensus 87 i~V~Sap~~~~-rR~aIR~TW~~~---~~~~~v~v~FvlG~~~-~~~~~~----l~~E~~~y~DIi~~df~DsY~Nlt~K 157 (366)
|+|.+.....+ -...++.+.... .....+.+ |++..++ +++... +.+=.+.+..-+.+-+..--.|.-.|
T Consensus 3 IliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI-~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~g~K 81 (254)
T cd04191 3 IVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDF-FILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGRK 81 (254)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEE-EEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCcc
Confidence 45555554544 556666665421 11124556 7777665 322211 11111223332223333333344456
Q ss_pred HHHHHHHHHhhCCCcceEEEeCCCceechHHHHHHHHhcCCCcceEeeeecCCCcccccCCC---ce-------e-----
Q psy16851 158 TVAMMEWIHDYCPDTHFILKTDDDMFINVPKLLTFLVKHQNSKMTFFGRLAKKWRPIRKSSS---KY-------Y----- 222 (366)
Q Consensus 158 tl~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~~~G~~~~~~~P~R~~~s---kw-------y----- 222 (366)
.-..-......-.+.+|++-.|.|+.+..+.|...+........ +|-+...... .+..+ ++ |
T Consensus 82 ag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~--vg~vq~~~~~-~n~~~~~~~~~~~~~~~~~~~~~ 158 (254)
T cd04191 82 AGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPR--AGIIQTAPKL-IGAETLFARLQQFANRLYGPVFG 158 (254)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCC--EEEEeCCcee-ECCCCHHHHHHHHHHHHHHHHHH
Confidence 55444433322136799999999999999999888875421111 1211110000 01000 00 0
Q ss_pred eCCCCCCCCCCCCCCCCCcccccHHHHHHHHHhhh-----cC-CCCCCCchhhHHHHHHhCCCcee
Q psy16851 223 VSPVQYSPNMFPDFTTGPAYLFTSDVVSDVYTKAL-----ET-TYLKLEDVFTTGVVAQSLKIKRQ 282 (366)
Q Consensus 223 vs~~~yp~~~yP~Y~~G~gYvlS~d~~~~l~~~s~-----~~-~~~~~EDV~ltGi~~~~~gi~~~ 282 (366)
.....|... -.+|.|.+.++.++++..+..-.. .. ...-.||..+ |+.+...|-+..
T Consensus 159 ~~~~~~~~~--~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l-~~~~~~~G~ri~ 221 (254)
T cd04191 159 RGLAAWQGG--EGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVE-AALMRRAGWEVR 221 (254)
T ss_pred HHHHHhcCC--ccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHH-HHHHHHcCCEEE
Confidence 000111111 135679999999999877532110 01 1234799985 999888776544
No 56
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=57.81 E-value=2.3e+02 Score=31.06 Aligned_cols=126 Identities=14% Similarity=0.063 Sum_probs=68.5
Q ss_pred chHHHHHHHHHHHHhhCCCcceEEEeCCCceechHHHHHHHHhcC-CCcceEeeee--cCCCccc-ccCCCceeeCCC--
Q psy16851 153 NLTLKTVAMMEWIHDYCPDTHFILKTDDDMFINVPKLLTFLVKHQ-NSKMTFFGRL--AKKWRPI-RKSSSKYYVSPV-- 226 (366)
Q Consensus 153 Nlt~Ktl~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~~-~~~~~~~G~~--~~~~~P~-R~~~skwyvs~~-- 226 (366)
|.-.|. ..++.+.++. +.+|++..|.|+.+..+.|.+.+.... ..+-.+++.. ..+..|+ |+-.....++.+
T Consensus 212 n~~~KA-gnLN~al~~a-~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~ 289 (713)
T TIGR03030 212 NVHAKA-GNINNALKHT-DGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENE 289 (713)
T ss_pred CCCCCh-HHHHHHHHhc-CCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHH
Confidence 333453 3456666665 689999999999999888877765542 1121122211 1111121 110000000000
Q ss_pred C-----CCC-CC-CCCCCCCCcccccHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhCCCceeec
Q psy16851 227 Q-----YSP-NM-FPDFTTGPAYLFTSDVVSDVYTKALETTYLKLEDVFTTGVVAQSLKIKRQHV 284 (366)
Q Consensus 227 ~-----yp~-~~-yP~Y~~G~gYvlS~d~~~~l~~~s~~~~~~~~EDV~ltGi~~~~~gi~~~~~ 284 (366)
. .+. +. -.+++.|++.++.+++.+.+-- ... ..-.||..+ |+-+...|.+....
T Consensus 290 ~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGG--f~~-~~vtED~~l-~~rL~~~G~~~~y~ 350 (713)
T TIGR03030 290 LFYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGG--IAG-ETVTEDAET-ALKLHRRGWNSAYL 350 (713)
T ss_pred HHHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCC--CCC-CCcCcHHHH-HHHHHHcCCeEEEe
Confidence 0 000 00 0246779999999999988731 111 223799995 99998888775443
No 57
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=56.64 E-value=2.1e+02 Score=28.40 Aligned_cols=82 Identities=12% Similarity=0.137 Sum_probs=47.7
Q ss_pred HHHHHHHhhCCCcceEEEeCCCceechHH---HHHHHHhcCCCcce--EeeeecCCCcccccCCCceeeCCCCCCCCCCC
Q psy16851 160 AMMEWIHDYCPDTHFILKTDDDMFINVPK---LLTFLVKHQNSKMT--FFGRLAKKWRPIRKSSSKYYVSPVQYSPNMFP 234 (366)
Q Consensus 160 ~~l~w~~~~c~~~~fvlK~DDD~fVn~~~---L~~~L~~~~~~~~~--~~G~~~~~~~P~R~~~skwyvs~~~yp~~~yP 234 (366)
.++.|+.+.. ++++++.+|||..+.++- +.+.|..+..++.+ +.|.- .+ ++.....+. |...|=
T Consensus 87 ~aln~vF~~~-~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~N-dn--------G~~~~~~~~-~~~lyr 155 (334)
T cd02514 87 WALTQTFNLF-GYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWN-DN--------GKEHFVDDT-PSLLYR 155 (334)
T ss_pred HHHHHHHHhc-CCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeec-cC--------CcccccCCC-cceEEE
Confidence 3777777665 699999999999999873 34444433333322 22221 11 111100000 111111
Q ss_pred -CCCCCCcccccHHHHHHH
Q psy16851 235 -DFTTGPAYLFTSDVVSDV 252 (366)
Q Consensus 235 -~Y~~G~gYvlS~d~~~~l 252 (366)
.|+.|.|+.+.+++-+.+
T Consensus 156 s~ff~glGWml~r~~W~e~ 174 (334)
T cd02514 156 TDFFPGLGWMLTRKLWKEL 174 (334)
T ss_pred ecCCCchHHHHHHHHHHHh
Confidence 478899999999999887
No 58
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=55.27 E-value=1.5e+02 Score=26.08 Aligned_cols=109 Identities=7% Similarity=-0.061 Sum_probs=57.5
Q ss_pred HHHHHhhCCCcceEEEeCCCceechHHHHHHHHhcCCCcceEeeeecC----CCcccccCCCceeeCCCCCCCCCCCCCC
Q psy16851 162 MEWIHDYCPDTHFILKTDDDMFINVPKLLTFLVKHQNSKMTFFGRLAK----KWRPIRKSSSKYYVSPVQYSPNMFPDFT 237 (366)
Q Consensus 162 l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~~~G~~~~----~~~P~R~~~skwyvs~~~yp~~~yP~Y~ 237 (366)
+.-+.+.+ ..+|++.+|+|..+..+.|.+.+...... ....|.... .....+....++.... .+ ...++
T Consensus 64 ~n~g~~~a-~~~~i~~~D~D~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~- 136 (221)
T cd02522 64 MNAGAAAA-RGDWLLFLHADTRLPPDWDAAIIETLRAD-GAVAGAFRLRFDDPGPRLRLLELGANLRS-RL---FGLPY- 136 (221)
T ss_pred HHHHHHhc-cCCEEEEEcCCCCCChhHHHHHHHHhhcC-CcEEEEEEeeecCCccchhhhhhccccee-cc---cCCCc-
Confidence 34444544 47999999999999887777765544332 233333211 1111110011111110 00 01112
Q ss_pred CCCcccccHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhCCCce
Q psy16851 238 TGPAYLFTSDVVSDVYTKALETTYLKLEDVFTTGVVAQSLKIKR 281 (366)
Q Consensus 238 ~G~gYvlS~d~~~~l~~~s~~~~~~~~EDV~ltGi~~~~~gi~~ 281 (366)
.+.|.++++++...+-.- -..+..||.-+ +.=+.+.|...
T Consensus 137 ~~~~~~~r~~~~~~~G~f---d~~~~~ED~d~-~~r~~~~G~~~ 176 (221)
T cd02522 137 GDQGLFIRRELFEELGGF---PELPLMEDVEL-VRRLRRRGRPA 176 (221)
T ss_pred CCceEEEEHHHHHHhCCC---CccccccHHHH-HHHHHhCCCEE
Confidence 345788999988777321 12237899887 77677777543
No 59
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=53.25 E-value=14 Score=38.73 Aligned_cols=83 Identities=17% Similarity=0.231 Sum_probs=54.1
Q ss_pred CCCCCchhhHHHHHHh-CCCceeecCC--c-ccCCCC-------CCCCccCCeEEEecCC-hHHHHHHHHHhhcCCCCcc
Q psy16851 261 YLKLEDVFTTGVVAQS-LKIKRQHVNE--F-FNKRIP-------LNACTIKKGISIHMIK-YHEQFELWKKLLDGRSKYI 328 (366)
Q Consensus 261 ~~~~EDV~ltGi~~~~-~gi~~~~~~~--f-~~~~~~-------~~~c~~~~~it~H~~~-p~em~~lW~~l~~~~~~~~ 328 (366)
+...||+.| |.|..+ +||..++... | ++.... ...-.+.+.||+|.++ |..|+.|+..+..-..+
T Consensus 10 ~s~~~Dv~l-GRCI~~~~gi~Ct~~~q~l~y~~~~~~~~~~~~~~~~~~~~~AiTlHPvk~p~~mYrLH~y~~~~~l~-- 86 (499)
T PF05679_consen 10 YSNHEDVEL-GRCIKKFTGISCTWSYQGLFYHNYELNKNDFIGDLKNKEFHNAITLHPVKSPAYMYRLHRYFLSLELQ-- 86 (499)
T ss_pred CCCCchhHH-HHHHHHhcCCCeeecccceEEEeeccCCCcccccccchhhhcceeeccCCCHHHHHHHHHHHHHHHHH--
Confidence 456799998 999974 8998876432 1 111111 1123356889999986 78899999887654322
Q ss_pred hhhHHHhhcchhhhcccc
Q psy16851 329 DVIHYVQKTSESFDHFYR 346 (366)
Q Consensus 329 ~~~~~~~~~~~~~~~~~r 346 (366)
.+..-+.++.++..++..
T Consensus 87 ~l~~~i~~L~~ei~~~s~ 104 (499)
T PF05679_consen 87 KLRQEIAQLQREIQNMSN 104 (499)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 246666667777766544
No 60
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=53.07 E-value=3.8e+02 Score=30.24 Aligned_cols=125 Identities=11% Similarity=0.013 Sum_probs=68.0
Q ss_pred chHHHHHHHHHHHHhhCCCcceEEEeCCCceechHHHHHHHHhc--CCCcceEeeee-cCCCccc-ccCCCceeeCCC-C
Q psy16851 153 NLTLKTVAMMEWIHDYCPDTHFILKTDDDMFINVPKLLTFLVKH--QNSKMTFFGRL-AKKWRPI-RKSSSKYYVSPV-Q 227 (366)
Q Consensus 153 Nlt~Ktl~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~--~~~~~~~~G~~-~~~~~P~-R~~~skwyvs~~-~ 227 (366)
|...|. ..++.+.+++ +.+|++..|.|+.+..+-|...+... +++-.+.-|.. ..+..|. |+-..--..+.+ +
T Consensus 323 n~~gKA-GnLN~aL~~a-~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp~~f~n~dp~~rnl~~~~~~~~e~~ 400 (852)
T PRK11498 323 HEHAKA-GNINNALKYA-KGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFFSPDPFERNLGRFRKTPNEGT 400 (852)
T ss_pred CCcchH-HHHHHHHHhC-CCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcceeccCCchHHHhhHHHhhcccchh
Confidence 333453 3567777766 78999999999999888777665432 23212222211 1111121 110000000000 0
Q ss_pred --C----CC--CCCCCCCCCCcccccHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhCCCceee
Q psy16851 228 --Y----SP--NMFPDFTTGPAYLFTSDVVSDVYTKALETTYLKLEDVFTTGVVAQSLKIKRQH 283 (366)
Q Consensus 228 --y----p~--~~yP~Y~~G~gYvlS~d~~~~l~~~s~~~~~~~~EDV~ltGi~~~~~gi~~~~ 283 (366)
| +. ..--.++.|++.++.+++++.+-- .... .-.||..+ ++-+...|-+...
T Consensus 401 ~fy~~iq~g~~~~~a~~~~Gs~aviRReaLeeVGG--fd~~-titED~dl-slRL~~~Gyrv~y 460 (852)
T PRK11498 401 LFYGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGG--IAVE-TVTEDAHT-SLRLHRRGYTSAY 460 (852)
T ss_pred HHHHHHHhHHHhhcccccccceeeeEHHHHHHhcC--CCCC-ccCccHHH-HHHHHHcCCEEEE
Confidence 0 00 000146789999999999999832 1112 24699995 9999888876544
No 61
>COG3306 Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=47.49 E-value=84 Score=29.99 Aligned_cols=36 Identities=6% Similarity=0.043 Sum_probs=25.5
Q ss_pred CCCCcccccHHHHHHHHHhhhcCC-CCCCCchhhHHH
Q psy16851 237 TTGPAYLFTSDVVSDVYTKALETT-YLKLEDVFTTGV 272 (366)
Q Consensus 237 ~~G~gYvlS~d~~~~l~~~s~~~~-~~~~EDV~ltGi 272 (366)
.+-+||++|+.+++.++..+...+ ..+.|+....+.
T Consensus 155 ~gt~gYiis~~aAk~fl~~~~~~~~~~pvD~~~~~~~ 191 (255)
T COG3306 155 LGTAGYIISRKAAKKFLELTESFKVVLPVDWFMFLEF 191 (255)
T ss_pred cCccceeecHHHHHHHHHHhhhcccccChhHHHhhhh
Confidence 344699999999999999877533 445666554333
No 62
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=46.10 E-value=3.4e+02 Score=30.05 Aligned_cols=191 Identities=10% Similarity=-0.011 Sum_probs=98.8
Q ss_pred ceEEEEEEcCcCCHHHHHHHHHHHhcccCCCCeeEEEEecCCCchhhhhHHHHhhhcCCeEEecccCCCCchHHHHHHHH
Q psy16851 83 LKILILITSALDHSEARSAIRQTWGHYNLRNDVAIAFVVGIGSDSGNQIVSEESNLYGDIIQGNFVDSYDNLTLKTVAMM 162 (366)
Q Consensus 83 ~~Lli~V~Sap~~~~rR~aIR~TW~~~~~~~~v~v~FvlG~~~~~~~~~l~~E~~~y~DIi~~df~DsY~Nlt~Ktl~~l 162 (366)
..+-|+|.-.-+.-.-.+.|...= .....++..++++...+++...+.+.+-.+.|+++..+-... ..| +-| -.+|
T Consensus 63 ~~vsIlVPa~nE~~vi~~~i~~ll-~~ldYP~~eI~vi~~~nD~~T~~~~~~l~~~~p~~~~v~~~~-~g~-~gK-a~aL 138 (727)
T PRK11234 63 KPLAIMVPAWNETGVIGNMAELAA-TTLDYENYHIFVGTYPNDPATQADVDAVCARFPNVHKVVCAR-PGP-TSK-ADCL 138 (727)
T ss_pred CCEEEEEecCcchhhHHHHHHHHH-HhCCCCCeEEEEEecCCChhHHHHHHHHHHHCCCcEEEEeCC-CCC-CCH-HHHH
Confidence 345555544333332333443321 111233466777655343333344555556778763332222 223 457 4567
Q ss_pred HHHHhhC------C--CcceEEEeCCCceechHHHHHHHHhcCCCcceEeeeecCCCcc-cccCCCceeeCC---CCCC-
Q psy16851 163 EWIHDYC------P--DTHFILKTDDDMFINVPKLLTFLVKHQNSKMTFFGRLAKKWRP-IRKSSSKYYVSP---VQYS- 229 (366)
Q Consensus 163 ~w~~~~c------~--~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~~~G~~~~~~~P-~R~~~skwyvs~---~~yp- 229 (366)
+|+...+ + .++.++-.|-|+.|..+.|. .+.........+-+-.. | .|+ .+.| ++. .+|.
T Consensus 139 N~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~~~VQ~p~~----p~~~~-~~~~-~~~~~~~EFa~ 211 (727)
T PRK11234 139 NNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVERKDLIQIPVY----PFERE-WTHF-TSGTYIDEFAE 211 (727)
T ss_pred HHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcCCCCeEeeccc----CCCcc-HHHH-HHHHHHHHHHH
Confidence 7777664 1 24557779999999999997 33333222223222211 1 111 1111 100 1111
Q ss_pred ----C----CC--CCCCCCCCcccccHHHHHHHHHhhh---cCCCCCCCchhhHHHHHHhCCCceeecC
Q psy16851 230 ----P----NM--FPDFTTGPAYLFTSDVVSDVYTKAL---ETTYLKLEDVFTTGVVAQSLKIKRQHVN 285 (366)
Q Consensus 230 ----~----~~--yP~Y~~G~gYvlS~d~~~~l~~~s~---~~~~~~~EDV~ltGi~~~~~gi~~~~~~ 285 (366)
. .. -+-.+.|.|..+|+.+++.+..... -.+..--||.-+ |+-+...|.+..-.+
T Consensus 212 ~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l~al~~~ggg~~~~~~~lTED~dl-g~rL~~~G~~v~f~~ 279 (727)
T PRK11234 212 LHGKDVPVREALAGQVPSAGVGTCFSRRAVTALLEDGDGIAFDVQSLTEDYDI-GFRLKEKGMREIFVR 279 (727)
T ss_pred HhhhhhHHHHHcCCCcccCCceEEEecccHHHHHHhcCCCCcCCCcchHHHHH-HHHHHHCCCEEEEcc
Confidence 0 01 1335688899999988776665442 223445799997 999999998765433
No 63
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=45.16 E-value=2.2e+02 Score=25.19 Aligned_cols=33 Identities=6% Similarity=-0.037 Sum_probs=24.3
Q ss_pred HHHHHhhCCCcceEEEeCCCceechHHHHHHHHh
Q psy16851 162 MEWIHDYCPDTHFILKTDDDMFINVPKLLTFLVK 195 (366)
Q Consensus 162 l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~ 195 (366)
...+.+.. +.+|++.+|+|..+..+.|.+.+..
T Consensus 76 ~N~g~~~a-~gd~i~~lD~D~~~~~~~l~~~~~~ 108 (219)
T cd06913 76 KNQAIAQS-SGRYLCFLDSDDVMMPQRIRLQYEA 108 (219)
T ss_pred HHHHHHhc-CCCEEEEECCCccCChhHHHHHHHH
Confidence 34455544 6799999999999998877665544
No 64
>KOG2336|consensus
Probab=43.52 E-value=24 Score=34.42 Aligned_cols=36 Identities=39% Similarity=0.614 Sum_probs=26.9
Q ss_pred ccCCCCCCCCCCCceEEEEEEcCcCCHHHHHHH-------HHHHhccc
Q psy16851 70 IPCVDLCPKLGDGLKILILITSALDHSEARSAI-------RQTWGHYN 110 (366)
Q Consensus 70 ~~~~~~C~~~~~~~~Lli~V~Sap~~~~rR~aI-------R~TW~~~~ 110 (366)
|.....|+. ++++ +|+|...||+.|+|| ++||+...
T Consensus 173 is~g~~~~g--kpvD---LVLSCVDNfEARMavN~ACNE~~q~WmESG 215 (422)
T KOG2336|consen 173 ISNGSLCPG--KPVD---LVLSCVDNFEARMAVNQACNELNQTWMESG 215 (422)
T ss_pred hhcCCCCCC--Ccce---EEeeehhhHHHHHHHHHHHHHhhhHHHHcc
Confidence 444567884 4555 478999999999987 68999754
No 65
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=42.22 E-value=74 Score=24.65 Aligned_cols=70 Identities=20% Similarity=0.258 Sum_probs=38.5
Q ss_pred CeeEEEEecCCC-chhhhhHHHHhhhcCCeEEecccCCCCchHHHHHHHHHHHHhhCCCcceEEEeCCCceechHH
Q psy16851 114 DVAIAFVVGIGS-DSGNQIVSEESNLYGDIIQGNFVDSYDNLTLKTVAMMEWIHDYCPDTHFILKTDDDMFINVPK 188 (366)
Q Consensus 114 ~v~v~FvlG~~~-~~~~~~l~~E~~~y~DIi~~df~DsY~Nlt~Ktl~~l~w~~~~c~~~~fvlK~DDD~fVn~~~ 188 (366)
++.-++++-..+ +...+ +.++ +.++-...+.+.+..-... ....+.+.+...+++|++.+|-|=|+.++.
T Consensus 18 G~d~i~i~d~~s~D~t~~-~l~~---~~~v~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 18 GVDHIYIYDDGSTDGTRE-ILRA---LPGVGIIRWVDPYRDERRQ-RAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCCEEEEEECCCCccHHH-HHHh---CCCcEEEEeCCCccchHHH-HHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 455444444433 33322 3233 3445455555666543333 334444444434799999999999987654
No 66
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=40.27 E-value=91 Score=30.27 Aligned_cols=76 Identities=12% Similarity=0.221 Sum_probs=49.2
Q ss_pred eeEEEEecCCCchhhhhHHHHhhhcCCeEEecccC--CCCchHHHHHHHHHHHHhhCCCcceEEEeCCCceechHHHHHH
Q psy16851 115 VAIAFVVGIGSDSGNQIVSEESNLYGDIIQGNFVD--SYDNLTLKTVAMMEWIHDYCPDTHFILKTDDDMFINVPKLLTF 192 (366)
Q Consensus 115 v~v~FvlG~~~~~~~~~l~~E~~~y~DIi~~df~D--sY~Nlt~Ktl~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~ 192 (366)
+.++|+-|.+ ....+|..=.....-++.+++.+ .+..-+.=-..+..|..+.| +..+++++|-|+|...++..+.
T Consensus 39 ~~vi~~~~~~--~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~-~Sn~vlFlDvDc~~S~dnF~k~ 115 (346)
T COG4092 39 TMVICLRAHE--VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKC-ESNLVLFLDVDCFGSSDNFAKM 115 (346)
T ss_pred EEEEEEecch--hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccc-cccEEEEEeccccccHHHHHHH
Confidence 4455554443 22233444444444455666644 33333433456778888889 7999999999999999999988
Q ss_pred H
Q psy16851 193 L 193 (366)
Q Consensus 193 L 193 (366)
|
T Consensus 116 l 116 (346)
T COG4092 116 L 116 (346)
T ss_pred H
Confidence 8
No 67
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=38.71 E-value=20 Score=29.57 Aligned_cols=29 Identities=17% Similarity=0.462 Sum_probs=21.6
Q ss_pred HHHHHHHHHHH-----hhCCCcceEEEeCCCcee
Q psy16851 156 LKTVAMMEWIH-----DYCPDTHFILKTDDDMFI 184 (366)
Q Consensus 156 ~Ktl~~l~w~~-----~~c~~~~fvlK~DDD~fV 184 (366)
.++++.++.-. ..||+++|+||+|++-+.
T Consensus 48 ~~~iq~l~lPat~~~~~~Cp~ArYv~~l~~qHW~ 81 (108)
T PF05412_consen 48 YQVIQSLRLPATLDRNGACPHARYVLKLDGQHWE 81 (108)
T ss_pred HHHHHHccCceeccCCCCCCCCEEEEEecCceEE
Confidence 46666665433 569999999999998664
No 68
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=35.76 E-value=25 Score=32.53 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=45.3
Q ss_pred CCcceEEEeCCCceechHHHHHHHHhc--CCCcceEeeeecCCCc---cc-ccCCCceeeC----CCCCCCCCCCCCCCC
Q psy16851 170 PDTHFILKTDDDMFINVPKLLTFLVKH--QNSKMTFFGRLAKKWR---PI-RKSSSKYYVS----PVQYSPNMFPDFTTG 239 (366)
Q Consensus 170 ~~~~fvlK~DDD~fVn~~~L~~~L~~~--~~~~~~~~G~~~~~~~---P~-R~~~skwyvs----~~~yp~~~yP~Y~~G 239 (366)
.+.+|++.+|.|+.+..+.|...+... .+.-....|.+..... +. +...-.|..+ ......-.+...+.|
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~~~~G 151 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGFVTCLPG 151 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCceEECCC
Confidence 368999999999999998887777654 2322334455422111 10 0000000000 000011123456788
Q ss_pred CcccccHHHHHHH
Q psy16851 240 PAYLFTSDVVSDV 252 (366)
Q Consensus 240 ~gYvlS~d~~~~l 252 (366)
++.++.+++++.+
T Consensus 152 ~~~~~R~~~l~~~ 164 (244)
T cd04190 152 CFSMYRIEALKGD 164 (244)
T ss_pred ceEEEEehhhcCC
Confidence 8999999988776
No 69
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=35.14 E-value=3.7e+02 Score=25.99 Aligned_cols=95 Identities=18% Similarity=0.272 Sum_probs=58.4
Q ss_pred CCCeeEEEEecCCC--chhhhhHHHHh----------hhcCCe--EEecccCCC------------CchHHHHHHHH-HH
Q psy16851 112 RNDVAIAFVVGIGS--DSGNQIVSEES----------NLYGDI--IQGNFVDSY------------DNLTLKTVAMM-EW 164 (366)
Q Consensus 112 ~~~v~v~FvlG~~~--~~~~~~l~~E~----------~~y~DI--i~~df~DsY------------~Nlt~Ktl~~l-~w 164 (366)
...|.+-|+++.++ +...+.|+.+. ..|+.| +.-||.+.- ...-.+.++-. .|
T Consensus 54 ~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~ 133 (269)
T PF03452_consen 54 HELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFRSITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARNF 133 (269)
T ss_pred chheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcceEEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHHH
Confidence 34688999999988 44444444333 345555 456775421 11122333222 34
Q ss_pred HHhh--CCCcceEEEeCCCceechHHHHHHHHhcCCCcceEeeeec
Q psy16851 165 IHDY--CPDTHFILKTDDDMFINVPKLLTFLVKHQNSKMTFFGRLA 208 (366)
Q Consensus 165 ~~~~--c~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~~~G~~~ 208 (366)
+... -|..+||+-.|-|+.-.++.|++-|-.. .++.+.-++.
T Consensus 134 LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~--~kdIivPn~~ 177 (269)
T PF03452_consen 134 LLSSALGPWHSWVLWLDADIVETPPTLIQDLIAH--DKDIIVPNCW 177 (269)
T ss_pred HHHhhcCCcccEEEEEecCcccCChHHHHHHHhC--CCCEEcccee
Confidence 4332 2679999999999999999999988764 3455555444
No 70
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=30.01 E-value=2.7e+02 Score=27.20 Aligned_cols=104 Identities=19% Similarity=0.216 Sum_probs=52.1
Q ss_pred CceEEEEEEcCcCCHHHHHHHHHHHhccc------CCCCeeEEEEecCCC----chhhhhHHHHhhhc---CCeEEeccc
Q psy16851 82 GLKILILITSALDHSEARSAIRQTWGHYN------LRNDVAIAFVVGIGS----DSGNQIVSEESNLY---GDIIQGNFV 148 (366)
Q Consensus 82 ~~~Lli~V~Sap~~~~rR~aIR~TW~~~~------~~~~v~v~FvlG~~~----~~~~~~l~~E~~~y---~DIi~~df~ 148 (366)
++.|.|||.|-... +-+.+.+|=++-- ....+.++-+++.++ +.+.+.|..+-..+ |=|..+.-.
T Consensus 51 ~~~L~IGIpTV~R~--~~sYL~~TL~SLl~~ls~~Er~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI~~p 128 (297)
T PF04666_consen 51 GKKLCIGIPTVKRE--KESYLLDTLASLLDGLSPEERKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVISPP 128 (297)
T ss_pred CCeEEEEecccccC--CCchHHHHHHHHHHhCCHHHhcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEEecc
Confidence 45699999997543 2245666665521 233565555566665 22223333221111 222222222
Q ss_pred CC-CC--------------chHHHHHHHH--HHHHhhCC-CcceEEEeCCCceechH
Q psy16851 149 DS-YD--------------NLTLKTVAMM--EWIHDYCP-DTHFILKTDDDMFINVP 187 (366)
Q Consensus 149 Ds-Y~--------------Nlt~Ktl~~l--~w~~~~c~-~~~fvlK~DDD~fVn~~ 187 (366)
.+ |. ...+++..-+ -++..+|. .++|++-..||+.....
T Consensus 129 ~~~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~~~~~~YyL~LEDDVia~~~ 185 (297)
T PF04666_consen 129 PSYYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYCQNLGDYYLQLEDDVIAAPG 185 (297)
T ss_pred cccCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHHHhcCCeEEEecCCeEechh
Confidence 22 21 1122222222 33445663 48999999999888654
No 71
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=29.64 E-value=6.7e+02 Score=27.57 Aligned_cols=111 Identities=11% Similarity=0.120 Sum_probs=63.5
Q ss_pred CceEEEEEEcCcCCHH-HHHHHHHHHhccc---CCCCeeEEEEecCCC-chhh----hhHHHHhhhcC---CeEEecccC
Q psy16851 82 GLKILILITSALDHSE-ARSAIRQTWGHYN---LRNDVAIAFVVGIGS-DSGN----QIVSEESNLYG---DIIQGNFVD 149 (366)
Q Consensus 82 ~~~Lli~V~Sap~~~~-rR~aIR~TW~~~~---~~~~v~v~FvlG~~~-~~~~----~~l~~E~~~y~---DIi~~df~D 149 (366)
..++-|+|.+.-+..+ -+..|+.++.+-. ...+..+ |++..+. +... +.+.+=.++|+ .|.. ..
T Consensus 123 ~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~y---r~ 198 (691)
T PRK05454 123 EARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEGRIFY---RR 198 (691)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEE---EE
Confidence 3456666666655433 2456777775422 1123444 7887766 2221 11222223333 3333 22
Q ss_pred CCCchHHHHHHHHHHHHhhCCCcceEEEeCCCceechHHHHHHHHhc
Q psy16851 150 SYDNLTLKTVAMMEWIHDYCPDTHFILKTDDDMFINVPKLLTFLVKH 196 (366)
Q Consensus 150 sY~Nlt~Ktl~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~ 196 (366)
--.|.-.|.-..-.|....-.+++|++-.|-|+.+..+.|.+.+...
T Consensus 199 R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m 245 (691)
T PRK05454 199 RRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLM 245 (691)
T ss_pred CCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHH
Confidence 22344457666666655433468999999999999999998888654
No 72
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=25.40 E-value=6.4e+02 Score=24.60 Aligned_cols=194 Identities=14% Similarity=0.056 Sum_probs=92.1
Q ss_pred CceEEEEEEcCcCCHHHHHHHHHHHhccc------CCCCeeEEEEecCCCchhhhhHHHHhhhc----CCeEEecccCCC
Q psy16851 82 GLKILILITSALDHSEARSAIRQTWGHYN------LRNDVAIAFVVGIGSDSGNQIVSEESNLY----GDIIQGNFVDSY 151 (366)
Q Consensus 82 ~~~Lli~V~Sap~~~~rR~aIR~TW~~~~------~~~~v~v~FvlG~~~~~~~~~l~~E~~~y----~DIi~~df~DsY 151 (366)
.+.+-|+|..--+...-.+.++++..... ......+++|-..+.+...+.+.+-++.+ .++..+...
T Consensus 69 ~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~--- 145 (333)
T PTZ00260 69 DVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLL--- 145 (333)
T ss_pred CeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcC---
Confidence 34455555443322223356666654321 11246777776666533333333323333 124333332
Q ss_pred CchHHHHHHHHHHHHhhCCCcceEEEeCCCceechHHHHHHHHhc----CCCcceEeeeecCC--C------cccccCCC
Q psy16851 152 DNLTLKTVAMMEWIHDYCPDTHFILKTDDDMFINVPKLLTFLVKH----QNSKMTFFGRLAKK--W------RPIRKSSS 219 (366)
Q Consensus 152 ~Nlt~Ktl~~l~w~~~~c~~~~fvlK~DDD~fVn~~~L~~~L~~~----~~~~~~~~G~~~~~--~------~P~R~~~s 219 (366)
.|.. |. .+++.+.+.. ..+|++.+|.|....++.+...++.. .+.-.+.+|..... . ...|.-.+
T Consensus 146 ~N~G-~~-~A~~~Gi~~a-~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~ 222 (333)
T PTZ00260 146 RNKG-KG-GAVRIGMLAS-RGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILM 222 (333)
T ss_pred CCCC-hH-HHHHHHHHHc-cCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHH
Confidence 2321 22 2333444443 57999999999999987766555433 23345778865421 1 01111100
Q ss_pred cee-eCCCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhCCCceeecC
Q psy16851 220 KYY-VSPVQYSPNMFPDFTTGPAYLFTSDVVSDVYTKALETTYLKLEDVFTTGVVAQSLKIKRQHVN 285 (366)
Q Consensus 220 kwy-vs~~~yp~~~yP~Y~~G~gYvlS~d~~~~l~~~s~~~~~~~~EDV~ltGi~~~~~gi~~~~~~ 285 (366)
+-+ .-....-...++.. +.|.-++++++++.++... ...-+. -|+.+ -+.+.+.|++....+
T Consensus 223 ~~~~~l~~~~~~~~i~D~-~~Gfk~~~r~~~~~i~~~~-~~~~~~-fd~El-l~~a~~~g~~I~EvP 285 (333)
T PTZ00260 223 YGFHFIVNTICGTNLKDT-QCGFKLFTRETARIIFPSL-HLERWA-FDIEI-VMIAQKLNLPIAEVP 285 (333)
T ss_pred HHHHHHHHHHcCCCcccC-CCCeEEEeHHHHHHHhhhc-cccCcc-chHHH-HHHHHHcCCCEEEEc
Confidence 000 00000001122222 2234588999999986431 222222 36665 666777887665555
No 73
>PHA01631 hypothetical protein
Probab=20.10 E-value=3.2e+02 Score=24.60 Aligned_cols=94 Identities=14% Similarity=0.110 Sum_probs=52.1
Q ss_pred cCCeEEecccCCCCchHHHHHHHHHHHHhhCC--CcceEEEeCCCceechHHHHHHHHhcCCC-cceEeeeecCCCcccc
Q psy16851 139 YGDIIQGNFVDSYDNLTLKTVAMMEWIHDYCP--DTHFILKTDDDMFINVPKLLTFLVKHQNS-KMTFFGRLAKKWRPIR 215 (366)
Q Consensus 139 y~DIi~~df~DsY~Nlt~Ktl~~l~w~~~~c~--~~~fvlK~DDD~fVn~~~L~~~L~~~~~~-~~~~~G~~~~~~~P~R 215 (366)
+.+|+...-...++++.. .-++..+.++.. +-+.++.+|.|++|+.-. ..+ +. ...-+|. |-+
T Consensus 39 ~~~Ii~~~t~~e~Rr~RI--Ak~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~~--~~~----~~~~v~t~Ci------PA~ 104 (176)
T PHA01631 39 QEKIIWIMTNTEIRWLRI--AKQLLTIVNFAKNIEDDIIAIIDSDLIIPNLR--EII----PNERVFTPCY------WLY 104 (176)
T ss_pred CCceEEecccchhHHHHH--HHHHHHHHHhhccCCccEEEEeccceEecCcc--ccc----cCCCccceee------eee
Confidence 566765554444444432 233344544322 357888999999987432 111 11 1112221 222
Q ss_pred cCCCceeeCCCCCCCCCCCCCCCCCcccccHHHHHHHHHhhh
Q psy16851 216 KSSSKYYVSPVQYSPNMFPDFTTGPAYLFTSDVVSDVYTKAL 257 (366)
Q Consensus 216 ~~~skwyvs~~~yp~~~yP~Y~~G~gYvlS~d~~~~l~~~s~ 257 (366)
. .|.+.+-+||.|.-|++.+..+..|.....
T Consensus 105 ~-----------kp~~~v~~FC~sTNf~~pr~~l~~l~~vi~ 135 (176)
T PHA01631 105 Y-----------DWANEIRPFCSGTNYIFRKSLLPYLEYTIN 135 (176)
T ss_pred e-----------cCCCcEEEEEccccEEeeHHHhHHHHHHHH
Confidence 2 122233379999999999999998876543
Done!