RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16851
(366 letters)
>gnl|CDD|216686 pfam01762, Galactosyl_T, Galactosyltransferase. This family
includes the galactosyltransferases
UDP-galactose:2-acetamido-2-deoxy-D-glucose3beta-
galactosyltransferase and UDP-Gal:beta-GlcNAc beta
1,3-galactosyltranferase. Specific
galactosyltransferases transfer galactose to GlcNAc
terminal chains in the synthesis of the lacto-series
oligosaccharides types 1 and 2.
Length = 196
Score = 166 bits (422), Expect = 3e-50
Identities = 63/194 (32%), Positives = 104/194 (53%), Gaps = 7/194 (3%)
Query: 97 EARSAIRQTWGHYNL--RNDVAIAFVVGIGSDSGNQI---VSEESNLYGDIIQGNFVDSY 151
R+AIR+TW + + F+VG+ +D+ ++ V EE+ LYGDI+ +F D+Y
Sbjct: 1 ARRNAIRKTWMNKGNSEGGRIKSLFLVGLSADTDGKVKDLVMEEAKLYGDIVVVDFEDTY 60
Query: 152 DNLTLKTVAMMEWIHDYCPDTHFILKTDDDMFINVPKLLTFLVKHQNSKMT--FFGRLAK 209
+NLT KT+ + + P +I K DDD++ KLL+ L + + F+G + K
Sbjct: 61 ENLTFKTLTGLLYAVSKAPSAKYIGKIDDDVYFFPDKLLSLLDRGNINPSESSFYGYVMK 120
Query: 210 KWRPIRKSSSKYYVSPVQYSPNMFPDFTTGPAYLFTSDVVSDVYTKALETTYLKLEDVFT 269
+ IR SK+YV P Y + +P + +GP YL + D + + +L++EDV+
Sbjct: 121 EGPVIRNKKSKWYVPPSDYPCSRYPPYASGPFYLLSRDAAELLLKASKHRRFLQIEDVYV 180
Query: 270 TGVVAQSLKIKRQH 283
TG++A L I R
Sbjct: 181 TGILADDLGISRVD 194
>gnl|CDD|215596 PLN03133, PLN03133, beta-1,3-galactosyltransferase; Provisional.
Length = 636
Score = 101 bits (254), Expect = 2e-23
Identities = 79/257 (30%), Positives = 125/257 (48%), Gaps = 28/257 (10%)
Query: 83 LKILILITSALDHSEARSAIRQTWGHYN-LRN-DVAIAFVVGIGSDSGNQIVSE----ES 136
L + I + S ++ + R A+R+TW Y+ +R+ VA+ F VG+ NQ+V+E E+
Sbjct: 385 LDLFIGVFSTANNFKRRMAVRRTWMQYDAVRSGAVAVRFFVGLHK---NQMVNEELWNEA 441
Query: 137 NLYGDIIQGNFVDSYDNLTLKTVAMMEWIHDYC------PDTHFILKTDDDMFINVPKLL 190
YGDI FVD Y +T KT+A+ C +++KTDDD F+ V ++L
Sbjct: 442 RTYGDIQLMPFVDYYSLITWKTLAI-------CIFGTEVVSAKYVMKTDDDAFVRVDEVL 494
Query: 191 TFLVKHQNSKMTFFGRLAKKWRPIRKSSSKYYVSPVQYSPNMFPDFTTGPAYLFTSDVVS 250
L + S +G + +P R SK+Y+SP ++ +P + GP Y+ + D+
Sbjct: 495 ASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEWPEETYPPWAHGPGYVVSRDIAK 554
Query: 251 DVYT--KALETTYLKLEDVFTTGVVAQSLKIKRQHVNEFFNKRIPLNACTIKKG-ISIHM 307
+VY K KLEDV G+ +K + V + RI C K G + H
Sbjct: 555 EVYKRHKEGRLKMFKLEDV-AMGIWIAEMKKEGLEVKYENDGRIYNEGC--KDGYVVAHY 611
Query: 308 IKYHEQFELWKKLLDGR 324
E LW+KL +G+
Sbjct: 612 QSPREMLCLWQKLQEGK 628
>gnl|CDD|178735 PLN03193, PLN03193, beta-1,3-galactosyltransferase; Provisional.
Length = 408
Score = 46.9 bits (111), Expect = 8e-06
Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 27/185 (14%)
Query: 85 ILILITSALDHSEARSAIRQTW---GHYNLR----NDVAIAFVVGIGSDSG---NQIVSE 134
+++ I +A + R ++R TW G + + I FV+G + SG ++ +
Sbjct: 141 MVVGINTAFSSRKRRDSVRATWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEA 200
Query: 135 ESNLYGDIIQGNFVDSYDNLTLKT-----VAMMEWIHDYCPDTHFILKTDDDMFINVPKL 189
E +GD ++ + V+ Y L+ KT A+ W D F +K DDD+ +N+ L
Sbjct: 201 EDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMW------DADFYVKVDDDVHVNIATL 254
Query: 190 LTFLVKHQNSKMTFFGRLAKKWRPIRKSSSKYYVSPVQY----SPNMFPDFTTGPAYLFT 245
LV+H+ + G + K P+ Y P + + N + TG Y +
Sbjct: 255 GETLVRHRKKPRVYIGCM--KSGPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAIS 312
Query: 246 SDVVS 250
D+ S
Sbjct: 313 KDLAS 317
>gnl|CDD|218956 pfam06248, Zw10, Centromere/kinetochore Zw10. Zw10 and rough deal
proteins are both required for correct metaphase
check-pointing during mitosis. These proteins bind to
the centromere/kinetochore.
Length = 593
Score = 33.1 bits (76), Expect = 0.21
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 284 VNEFFNKRIPLNACTIKKGISIHMIKYHEQFELWKKLLDGRSKYIDVIHYVQKTSESFDH 343
V E + L + I ++K HE E + L G+ Y+ ++K D
Sbjct: 82 VEELAELKRQLEEKILGLKILQKLLKIHEALEETNEALSGK-DYLKAADLLEKAKSLLDG 140
Query: 344 FYRSGGETL 352
GE L
Sbjct: 141 LKSRKGEEL 149
>gnl|CDD|140237 PTZ00210, PTZ00210, UDP-GlcNAc-dependent glycosyltransferase;
Provisional.
Length = 382
Score = 31.8 bits (72), Expect = 0.50
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 170 PDTHFILKTDDDMFINVPKLLTFL 193
P+ +I+K DDD+FI VPK L L
Sbjct: 198 PNVSYIVKGDDDIFIRVPKYLADL 221
>gnl|CDD|217603 pfam03537, DUF297, TM1410 hypothetical-related protein.
Length = 203
Score = 30.3 bits (69), Expect = 0.97
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 8/55 (14%)
Query: 148 VDSYDNLTLK--------TVAMMEWIHDYCPDTHFILKTDDDMFINVPKLLTFLV 194
VDSY N VA++ + P IL ++ + L+ +V
Sbjct: 112 VDSYQNANGTGRPLTAADLVALIRELAARAPGLAIILNNGFELLPALAPLVDGVV 166
>gnl|CDD|215605 PLN03153, PLN03153, hypothetical protein; Provisional.
Length = 537
Score = 30.3 bits (68), Expect = 2.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 170 PDTHFILKTDDDMFINVPKLLTFLVKHQNSKMTFFG 205
PD + + DDD N L+ L K+ S+M + G
Sbjct: 209 PDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVG 244
>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine
triphosphatases (GTPases). Rho2 is a fungal GTPase that
plays a role in cell morphogenesis, control of cell wall
integrity, control of growth polarity, and maintenance
of growth direction. Rho2 activates the protein kinase C
homolog Pck2, and Pck2 controls Mok1, the major (1-3)
alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2
regulates the construction of the cell wall. Unlike
Rho1, Rho2 is not an essential protein, but its
overexpression is lethal. Most Rho proteins contain a
lipid modification site at the C-terminus, with a
typical sequence motif CaaX, where a = an aliphatic
amino acid and X = any amino acid. Lipid binding is
essential for proper intracellular localization via
membrane attachment. As with other Rho family GTPases,
the GDP/GTP cycling is regulated by GEFs (guanine
nucleotide exchange factors), GAPs (GTPase-activating
proteins) and GDIs (guanine nucleotide dissociation
inhibitors).
Length = 190
Score = 27.5 bits (61), Expect = 8.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 142 IIQGNFVDSYDNLTLKTVAMMEWIHDYCPDTHFIL 176
I+ G +D+ D+L +E + YCP+ IL
Sbjct: 76 ILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVIL 110
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.399
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,300,246
Number of extensions: 1757910
Number of successful extensions: 1296
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1292
Number of HSP's successfully gapped: 12
Length of query: 366
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 268
Effective length of database: 6,590,910
Effective search space: 1766363880
Effective search space used: 1766363880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.0 bits)