RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16851
(366 letters)
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR;
glycosyltransferase, developmental protein,
transmembrane, G apparatus, notch signaling; 1.8A {Mus
musculus} PDB: 2j0b_A*
Length = 280
Score = 73.6 bits (180), Expect = 5e-15
Identities = 36/238 (15%), Positives = 76/238 (31%), Gaps = 24/238 (10%)
Query: 85 ILILI-TSALDHSEARSAIRQTWGHYNLRNDVAIAFVVGIGSDSGNQIVSEESNLYGDII 143
I I + T+ H + TW + I +DS ++ + E + +
Sbjct: 15 IFIAVKTTWAFHRSRLDLLLDTWVSRIRQQTF-------IFTDSPDERLQERLGPHLVVT 67
Query: 144 QGNFVDSYDNLTLKTVAMMEWIHDYCPDTHFILKTDDDMFINVPKLLTFLVKHQNSKMTF 203
Q + S+ L+ K A E+ + DDD ++N LL L + +
Sbjct: 68 QCSAEHSHPALSCKMAA--EFDAFLVSGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVY 125
Query: 204 FGRLAKKWRPIRKSSSKYYVSPVQYSPNMFPDFTTGPAYLFTSDVVSDVYTKALETTYLK 263
G+ + R + S + F T G + + + A + ++
Sbjct: 126 VGKPS----LNRPIHASELQSKQRTKLVRFWFATGGAGFCINRQLALKMVPWASGSHFVD 181
Query: 264 L-------EDVFTTGVVAQSLKIKRQHVNEFFNKRIPL---NACTIKKGISIHMIKYH 311
+D ++ L + Q F + L A + + +++ +
Sbjct: 182 TSALIRLPDDCTVGYIIECKLGGRLQPSPLFHSHLETLQLLGAAQLPEQVTLSYGVFE 239
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 2e-04
Identities = 42/240 (17%), Positives = 72/240 (30%), Gaps = 53/240 (22%)
Query: 132 VSEESNLYGDII---QGNFVDSYDNLTLKTVAMMEWIHDYCPDTHFILKTDD-DMFINVP 187
E Y DI+ + FVD++D + + D IL ++ D I
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFD---------CKDVQDM---PKSILSKEEIDHIIMSK 58
Query: 188 -------KLLTFLVKHQNSKMTFF---------GRLAKKWRPIRKSSSKYYVSPVQYSPN 231
+L L+ Q + F L + ++ S ++
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 232 MFPDFTTGPAYLFTSDVVSDVYTKALETTYLKLED---VFTTGV-----------VAQSL 277
++ D Y +V L L+L V GV V S
Sbjct: 119 LYNDNQVFAKY----NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 278 KIKRQHVNEFFNKRIPLNACTIKKGISIHMIKYHEQFEL-WKKLLDGRSKYIDVIHYVQK 336
K++ + + F + L C + + + K Q + W D S IH +Q
Sbjct: 175 KVQCKMDFKIF--WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 8e-04
Identities = 45/325 (13%), Positives = 82/325 (25%), Gaps = 139/325 (42%)
Query: 16 PAVETKKFTSTKALVLEDITRESVVQKVLPVQKNKYLDKNKGIKTEDLYVAGFNI----- 70
V A L ++ R ++ E ++ G NI
Sbjct: 182 VLVGD--LIKFSAETLSELIRTTL-------------------DAEKVFTQGLNILEWLE 220
Query: 71 -----PCVDL-------CPKLGDGLKILILITSA-----------LDHSEARSAIRQTWG 107
P D CP LI + E RS ++ G
Sbjct: 221 NPSNTPDKDYLLSIPISCP--------LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 108 HYNLRNDVAIAFVVGIGSDSGNQIVSEESNLYGDIIQGNFVDSYDNLTLKTVAMMEWI-- 165
H + A + +DS +S+ K + ++ +I
Sbjct: 273 H---SQGLVTAVAIA-ETDSW--------------------ESFFVSVRKAITVLFFIGV 308
Query: 166 --HDYCPDTHFILKTDDD-----------MF----INVPKLLTFLVKHQNSKMTFFGRLA 208
++ P+T +D M + ++ + V NS +
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY-VNKTNSHL------- 360
Query: 209 KKWRPIRKSSSKYYVSPVQYSPNMFPDFTTGPAYLFTSDVVSDVYTKALETTYLKLEDVF 268
P + + +S V +GP ++L L L
Sbjct: 361 ----P---AGKQVEISLVN-GAKNL--VVSGPP-------------QSLYGLNLTLRKAK 397
Query: 269 TTGVVAQSLKIKRQHVNEFFNKRIP 293
+ QS +I F++R
Sbjct: 398 APSGLDQS-RIP-------FSERKL 414
Score = 39.3 bits (91), Expect = 0.002
Identities = 34/202 (16%), Positives = 59/202 (29%), Gaps = 77/202 (38%)
Query: 3 EALMVTNFSIVTVPAVETKKFTSTKALVLEDITRESVVQKVLPVQKNKYLDKNKGIKTED 62
L T F T PA+ KA ED+ K+KG+ D
Sbjct: 1724 GLLSATQF---TQPAL----TLMEKAA-FEDL-------------------KSKGLIPAD 1756
Query: 63 LYVAGFNIPCVDLCPKLG---------------DGLKIL----ILITSALDHSE-ARS-- 100
AG + LG ++++ + + A+ E RS
Sbjct: 1757 ATFAGHS---------LGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 101 ---AIRQTWGHYNLRNDVAIAFVVGIGSDSG------N------QIVS--EESNLY--GD 141
AI + + V +G +G N Q V+ + L +
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTN 1867
Query: 142 IIQGNFVDSYDNLTLKTVAMME 163
++ + D + L+ +E
Sbjct: 1868 VLNFIKLQKIDIIELQKSLSLE 1889
Score = 35.8 bits (82), Expect = 0.026
Identities = 55/298 (18%), Positives = 89/298 (29%), Gaps = 121/298 (40%)
Query: 71 PCVDLCPKL-------GDGLKILILITSALDHSEARSAIRQTWGHYNLRNDVAIA----- 118
P L P + +G+ +L S L + + + +T H V I+
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 119 --FVVGIGSDSGNQIVSEESNLYGDIIQGNFVDSYDNLTLKTVAMMEWIHDYCPDTHFIL 176
VV SG +S LYG NLTL+ P
Sbjct: 375 KNLVV-----SGPP----QS-LYG------L-----NLTLRKAK--------AP------ 399
Query: 177 KTDDDMFINVPKLLTFLVKHQNSKMTFFGRLAK-KWR--PIRKSSSKYYVSPVQY-SPNM 232
+ D Q S++ F R K R P+ SP + S +
Sbjct: 400 -SGLD---------------Q-SRIPFSERKLKFSNRFLPV--------ASP--FHSHLL 432
Query: 233 FPDFTTGPAYLFTSDVVSDVYTKALETTYLKLED----VFTT--GVVAQSLK--IKRQHV 284
PA + + D+ + +D V+ T G + L I + V
Sbjct: 433 ------VPA---SDLINKDLVKNNVS---FNAKDIQIPVYDTFDGSDLRVLSGSISERIV 480
Query: 285 NEFFNKRIPLN--ACTIKKGISIHMIKYHEQF---------ELWKKLLDGRSKYIDVI 331
+ R+P+ T + + H++ F L + DG + VI
Sbjct: 481 DCII--RLPVKWETTT-QFKAT-HIL----DFGPGGASGLGVLTHRNKDGTG--VRVI 528
Score = 29.2 bits (65), Expect = 2.8
Identities = 23/147 (15%), Positives = 48/147 (32%), Gaps = 45/147 (30%)
Query: 242 YL-FTSDVVS--------DVYTKAL---ETTYLKLEDVFTTGVVAQSLK------IKRQH 283
+L + S +V V L E YL+ D+ + A+ L+ +K +
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA--LAAKLLQENDTTLVKTKE 121
Query: 284 V-NEFFNKRIPLNACTIKKGISIHMIKYHEQFELWKKLLDGRSKYIDVIHYV---QKTSE 339
+ + RI KK S L++ + +G ++ + + Q ++
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSA----------LFRAVGEGNAQ----LVAIFGGQGNTD 167
Query: 340 S-FD------HFYRSGGETLLSKVQKL 359
F+ Y L+ +
Sbjct: 168 DYFEELRDLYQTYHVLVGDLIKFSAET 194
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein
structure, midwest center for S genomics, MCSG, PSI-2;
HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Length = 218
Score = 33.8 bits (78), Expect = 0.059
Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 84 KILILITSALDHSEARSAIRQTWGHYNLRNDVAIAFVVGIGSDSGNQIVSEESNLYGDII 143
+ +I+IT +H + ++ V+G+G G I E +N Y
Sbjct: 113 RAIIVITDGENHEGGAVEAAKAAAEKGIQ-----VSVLGVGMPEGAPIPVEGTNDYRRDR 167
Query: 144 QGNFVDS-YDNLTLKTVA 160
+GN + + + + +A
Sbjct: 168 EGNVIVTRLNEGMCQEIA 185
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A
{Homo sapiens} SCOP: c.62.1.1
Length = 198
Score = 29.3 bits (66), Expect = 1.7
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 9/55 (16%)
Query: 84 KILILIT---SALDHSEARSAIRQTWGHYNLRNDVAIAFVVGIGSDSGNQIVSEE 135
KILI+IT D + + I I + +G+G N+ +E
Sbjct: 112 KILIVITDGKKEGDSLDYKDVIPM------ADAAGIIRYAIGVGLAFQNRNSWKE 160
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP:
c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A
1bhq_1 1bho_1 1idn_1 3qa3_G
Length = 194
Score = 28.5 bits (64), Expect = 2.7
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 9/55 (16%)
Query: 84 KILILIT---SALDHSEARSAIRQTWGHYNLRNDVAIAFVVGIGSDSGNQIVSEE 135
KIL++IT D I + + I +V+G+G ++ +E
Sbjct: 108 KILVVITDGEKFGDPLGYEDVIPE------ADREGVIRYVIGVGDAFRSEKSRQE 156
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 3.4
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 15/35 (42%)
Query: 209 KKWRPIRK--SSSKYYVSPVQYSPNMFPDFTTGPA 241
+K + ++K +S K Y + + + PA
Sbjct: 18 EK-QALKKLQASLKLY------ADD------SAPA 39
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A
{Toxoplasma gondii}
Length = 178
Score = 27.3 bits (61), Expect = 6.6
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 8/44 (18%)
Query: 84 KILILIT--SALDHSEARSAIRQTWGHYNLRNDVAIAFVVGIGS 125
K++I +T + A ++ +R I V+ +G
Sbjct: 124 KLVIGMTDGESDSDFRTVRAAKE------IRELGGIVTVLAVGH 161
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting;
1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A
1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A
1u0o_C
Length = 202
Score = 27.3 bits (61), Expect = 7.0
Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 23/98 (23%)
Query: 84 KILILIT----SALDHSEARSAIRQTWGHYNLRNDVAIAFVVGIGSDSG----NQIVSE- 134
+I +L+ ++ L+ I VGIG + I +
Sbjct: 117 RIALLLMASQEPQRMSRNFVRYVQG------LKKKKVIVIPVGIGPHANLKQIRLIEKQA 170
Query: 135 -ESNLYGDIIQGNFVDSYDNLTLKTVAMMEWIHDYCPD 171
E+ + + S D L + ++ ++ D P+
Sbjct: 171 PENKAF-------VLSSVDELEQQRDEIVSYLCDLAPE 201
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling,
linkage specificity, deubiquitinating enzyme, Lys63-
linked, anti-oncogene; 2.8A {Homo sapiens}
Length = 374
Score = 27.4 bits (60), Expect = 7.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 67 GFNIPCVDLCPKLGDGLKILILITSALDHSEARSAIR 103
GFNIP V CP++G+ LK+ + +LD + R
Sbjct: 318 GFNIPQVTPCPEVGEYLKMSLEDLHSLDSRRIQGCAR 354
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.399
Gapped
Lambda K H
0.267 0.0683 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,522,211
Number of extensions: 330053
Number of successful extensions: 633
Number of sequences better than 10.0: 1
Number of HSP's gapped: 633
Number of HSP's successfully gapped: 17
Length of query: 366
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 271
Effective length of database: 4,049,298
Effective search space: 1097359758
Effective search space used: 1097359758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)