RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16851
         (366 letters)



>d1g66a_ c.69.1.30 (A:) Acetylxylan esterase {Penicillium
           purpurogenum [TaxId: 28575]}
          Length = 207

 Score = 28.1 bits (62), Expect = 1.3
 Identities = 5/33 (15%), Positives = 11/33 (33%)

Query: 144 QGNFVDSYDNLTLKTVAMMEWIHDYCPDTHFIL 176
             ++  S         + +   +  CP T  +L
Sbjct: 54  GASYSSSVAQGIAAVASAVNSFNSQCPSTKIVL 86


>d1kwfa_ a.102.1.2 (A:) CelA cellulase {Clostridium thermocellum
           [TaxId: 1515]}
          Length = 363

 Score = 28.1 bits (62), Expect = 1.8
 Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 16/113 (14%)

Query: 88  LITSALDHSEARSAIRQTWGHYN---LRNDVAIAFVVGIGSDSGNQIVSEESNLYGDII- 143
             + A + SE  + ++  W  +    + ++ A  +       S N     +   YG ++ 
Sbjct: 13  PTSIADNQSEVTAMLKAEWEDWKSKRITSNGAGGYKRVQRDASTNYDTVSQGMGYGLLLA 72

Query: 144 -QGNFVDSYDNL------TLKTVAMMEWIHDYCPDTHFILK-----TDDDMFI 184
              N    +D+L            +M W  D   +           TD D  I
Sbjct: 73  VCFNEQALFDDLYRYVKSHFNGNGLMHWHIDANNNVTSHDGGDGAATDADEDI 125


>d1vzva_ b.57.1.1 (A:) VZV protease {Varicella-Zoster virus
          [TaxId: 10335]}
          Length = 221

 Score = 26.3 bits (58), Expect = 6.0
 Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 4/25 (16%)

Query: 61 EDLYVAGFNIPCVDLCPKLGDGLKI 85
          E LYVAG+    + L  K    L I
Sbjct: 1  EALYVAGY----LALYSKDEGELNI 21


>d1vqoc1 c.22.1.1 (C:1-246) Ribosomal protein L4 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 246

 Score = 26.3 bits (57), Expect = 6.0
 Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 10/89 (11%)

Query: 21  KKFTSTKALVLEDITRESVVQKVLPVQKNKYLDKNKGIKTEDLYVAGFNIPCVDLCP--- 77
           +       +   D T+    Q     +K +       + +++   A  N+   D+     
Sbjct: 158 EALDVHADIDRADETKIKAGQGSARGRKYRRPASILFVTSDEPSTAARNLAGADVATASE 217

Query: 78  ----KL--GDGLKILILIT-SALDHSEAR 99
                L  G     L + T SAL     R
Sbjct: 218 VNTEDLAPGGAPGRLTVFTESALAEVAER 246


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0595    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,353,686
Number of extensions: 63253
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 9
Length of query: 366
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 279
Effective length of database: 1,213,086
Effective search space: 338450994
Effective search space used: 338450994
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)