BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16852
(579 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 136/537 (25%), Positives = 215/537 (40%), Gaps = 75/537 (13%)
Query: 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
L P F K++ V P F C++ G ++W KDG L + + + +V+TL
Sbjct: 100 LPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATL 159
Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPV---IAEAQS 121
+I+ + +G Y C A+N G A+ SA L + E E P F LKPV +A +S
Sbjct: 160 QILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEH----EVPPFFD-LKPVSVDLALGES 214
Query: 122 PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
T K VTG I W + EI P + M T L++ + T D Y+
Sbjct: 215 -GTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA--TLTVLKVTKGDAGQYTCY 271
Query: 182 AVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ-ALLVPKDSTVTLEAEYTGTPT 240
A N G+ C A L V E P ++ L+ + +V +D E + G+P
Sbjct: 272 ASNVAGKDSCSAQL-----------GVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPE 320
Query: 241 PEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVT 297
+V W+K+ EI + ++V L + + + +G Y N AG A +S S+
Sbjct: 321 IKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLK 380
Query: 298 ITVAEAETVMMDVRVESHPTASFQWF-IHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTI 356
+ R + HP + + +H E + G P V+W D ++ GK+ I
Sbjct: 381 VKEPPV------FRKKPHPVETLKGADVHLE-CELQGTPPFQVSWHKDKRELRSGKKYKI 433
Query: 357 YQDTDGLCKLAISEVFPENAGLYSCTAVNPXXXXXXXXXXXXXXXXXSGEAPKFTKPLKP 416
+ + L + I V + G Y C A N P+F K L
Sbjct: 434 MSE-NFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKA------PPRFVKKLSD 486
Query: 417 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 476
+ L+AT+ G S+ W++ K EI+ ++ + +S SE
Sbjct: 487 ISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIW----------ISYSE----- 531
Query: 477 EAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533
N + L S+ G TC+ +N AG+ C ATLS+L
Sbjct: 532 -------------------NIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 131/576 (22%), Positives = 222/576 (38%), Gaps = 78/576 (13%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
P FIE ++ V + +P CKV+G P + W K+ T+L + Y + +V++L I
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVI 65
Query: 67 INPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLK 126
D+G YTCKA N G SA L++ E++ P F + LK V P +
Sbjct: 66 NKVDHSDVGEYTCKAENSVGAVASSAVLVIKERK---LPPSFARKLKDVHETLGFPVAFE 122
Query: 127 ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF 186
+ G + WY+ E+L D+ + ++ + L I + Y+ A N
Sbjct: 123 CRINGSEPLQVSWYKDG-ELLKDDAN-LQTSFIHNVATLQILQTDQSHVGQYNCSASNPL 180
Query: 187 GRAECRANLVLRKATTIDKPRVLEAPTI--VRPLQALLVPKDSTVTLEAEYTGTPTPEVK 244
G A A L L + E P ++P+ L +S T + TGT ++
Sbjct: 181 GTASSSAKLTLSEH---------EVPPFFDLKPVSVDLALGESG-TFKCHVTGTAPIKIT 230
Query: 245 WFKNGKEIV---SKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA 301
W K+ +EI + + +N L + + TK G+Y N AG + S S + V
Sbjct: 231 WAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAG--KDSCSAQLGVQ 288
Query: 302 EAETVMMDVRVESHPTASFQWFIHSE-PVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDT 360
E + + P+ + H+ + G P V W D T ++E + +
Sbjct: 289 EPPRFIKKLE----PSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRM-SFV 343
Query: 361 DGLCKLAISEVFPENAGLYSCTAVNPXXXXXXXXXXXXXXXXXSGEAPKFTKPLKPVIAE 420
+ + L + + E++G Y+C A N E P F K PV
Sbjct: 344 ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK------EPPVFRKKPHPVETL 397
Query: 421 AQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVY 480
+ L+ + G P + W++ K E+
Sbjct: 398 KGADVHLECELQGTPPFQVSWHKDKREL-------------------------------- 425
Query: 481 SVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTD 540
S + KIM++ + + I + IG+ C+A N GS TC +++L
Sbjct: 426 ---RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITL-------- 474
Query: 541 VMESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEI 576
PRF+K + G+ V A + +E + +
Sbjct: 475 -KAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISV 509
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 99/392 (25%), Positives = 161/392 (41%), Gaps = 36/392 (9%)
Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
E P F +PL+ V A P TL+ V G P I WY+ ++ + M+F
Sbjct: 4 EPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL 63
Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLV 223
V I++ D Y+ KA N+ G A LV+ K R L P+ R L+ +
Sbjct: 64 V--INKVDHSDVGEYTCKAENSVGAVASSAVLVI-------KERKL-PPSFARKLKDVHE 113
Query: 224 PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETK----DNVTKLVIKQTTKKTTGKY 279
V E G+ +V W+K+G E++ D + NV L I QT + G+Y
Sbjct: 114 TLGFPVAFECRINGSEPLQVSWYKDG-ELLKDDANLQTSFIHNVATLQILQTDQSHVGQY 172
Query: 280 EIRVVNEAGEARTSGSVTITVAEAETV--MMDVRVESHPTASFQWFIHSEPVVVTGKPTP 337
N G A +S +T++ E + V V+ S + H VTG
Sbjct: 173 NCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCH-----VTGTAPI 227
Query: 338 LVTWSHDGTPMKEG--KEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPXXXXXXXXX 395
+TW+ D ++ G ++T+ ++T L L +++ +AG Y+C A N
Sbjct: 228 KITWAKDNREIRPGGNYKMTLVENTATLTVLKVTK---GDAGQYTCYASNVAGKDSCSAQ 284
Query: 396 XXXXXXXXSGEAPKFTKPLKPV-IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGH 454
E P+F K L+P I + + + G P + WY+ + EI +
Sbjct: 285 LGVQ------EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKF 338
Query: 455 TMEFNPTTGECVLSISEATPQDEAVYSVKASS 486
M F + VL + + +D Y+ +A +
Sbjct: 339 RMSFVESVA--VLEMYNLSVEDSGDYTCEAHN 368
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 143/379 (37%), Gaps = 69/379 (18%)
Query: 209 LEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSK---DIETKDNVTK 265
+E P + PL+ + +TL+ + GTP + W+K ++ S ++ K+NV
Sbjct: 3 MEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVAS 62
Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIH 325
LVI + G+Y + N G +S + I + + H T F
Sbjct: 63 LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGF----- 117
Query: 326 SEPVV----VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSC 381
PV + G V+W DG +K+ + + L I + + G Y+C
Sbjct: 118 --PVAFECRINGSEPLQVSWYKDGELLKDDANLQT-SFIHNVATLQILQTDQSHVGQYNC 174
Query: 382 TAVNPXXXXXXXXXXXXXXXXXSGEAPKFTKPLKPV---IAEAQSPATLKATVTGRPTPS 438
+A NP E P F LKPV +A +S T K VTG
Sbjct: 175 SASNPLGTASSSAKLTLSEH----EVPPFFD-LKPVSVDLALGES-GTFKCHVTGTAPIK 228
Query: 439 ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRS 498
I W + EI P + M ++ E N +
Sbjct: 229 ITWAKDNREIRPGGNYKM-----------TLVE------------------------NTA 253
Query: 499 VLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVM- 557
L + K+T+ G TC A NVAG +C+A L V E PRFIK E ++++
Sbjct: 254 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG---------VQEPPRFIKKLEPSRIVK 304
Query: 558 DGQSVLFTAQVGYSERLEI 576
+ + ++G S +++
Sbjct: 305 QDEHTRYECKIGGSPEIKV 323
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTEL-HATEHYLITTVESVSTLE 65
PRF++K+ + + + +EG ++ W KD E+ +++ I+ E+++TL+
Sbjct: 478 PRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQ 537
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
+ G YTC+ N G C A L VLE
Sbjct: 538 FSRAEPANAGKYTCQIKNEAGTQECFATLSVLE 570
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 136/300 (45%), Gaps = 26/300 (8%)
Query: 5 LAPRFIEKIQPVVSHQE--QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
+AP F + ++PV + F C V G +TW KD E+ +Y +T VE+ +
Sbjct: 3 MAPPFFD-LKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 61
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPV-IAEAQS 121
TL ++ TK D G YTC A+N+ G +CSA L V E P+F K L+P I +
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ------EPPRFIKKLEPSRIVKQDE 115
Query: 122 PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
+ + G P + WY+ + EI + M F + VL + + +D Y+ +
Sbjct: 116 HTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA--VLEMYNLSVEDSGDYTCE 173
Query: 182 AVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP 241
A N G A +L +V E P + + K + V LE E GTP
Sbjct: 174 AHNAAGSASSSTSL-----------KVKEPPVFRKKPHPVETLKGADVHLECELQGTPPF 222
Query: 242 EVKWFKNGKEIVSK---DIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
+V W K+ +E+ S I +++ +T + I G+Y+ + N+ G GS+T+
Sbjct: 223 QVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 95/194 (48%), Gaps = 11/194 (5%)
Query: 7 PRFIEKIQPV-VSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
PRFI+K++P + Q++ + CK+ G P + W KD TE+ + + ++ VESV+ LE
Sbjct: 99 PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLE 158
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATL 125
+ N + ED G YTC+A N G A+ S +L V E P F K PV + L
Sbjct: 159 MYNLSVEDSGDYTCEAHNAAGSASSSTSLKV------KEPPVFRKKPHPVETLKGADVHL 212
Query: 126 KATVTGRPTPSICWYRGKEEILPDNGHT-MEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
+ + G P + W++ K E+ + M N T +L++ A D Y KA N
Sbjct: 213 ECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSA---DIGEYQCKASN 269
Query: 185 TFGRAECRANLVLR 198
G C ++ L+
Sbjct: 270 DVGSYTCVGSITLK 283
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 118/289 (40%), Gaps = 31/289 (10%)
Query: 105 APKFTKPLKPV---IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
AP F LKPV +A +S T K VTG I W + EI P + M T
Sbjct: 4 APPFFD-LKPVSVDLALGES-GTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 61
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ-A 220
L++ + T D Y+ A N G+ C A L V E P ++ L+ +
Sbjct: 62 --TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL-----------GVQEPPRFIKKLEPS 108
Query: 221 LLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTG 277
+V +D E + G+P +V W+K+ EI + ++V L + + + +G
Sbjct: 109 RIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSG 168
Query: 278 KYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWF-IHSEPVVVTGKPT 336
Y N A S S ++ V E R + HP + + +H E + G P
Sbjct: 169 DYTCEAHNAA--GSASSSTSLKVKEPPV----FRKKPHPVETLKGADVHLE-CELQGTPP 221
Query: 337 PLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
V+W D ++ GK+ I + + L + I V + G Y C A N
Sbjct: 222 FQVSWHKDKRELRSGKKYKIMSE-NFLTSIHILNVDSADIGEYQCKASN 269
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 112/307 (36%), Gaps = 52/307 (16%)
Query: 230 TLEAEYTGTPTPEVKWFKNGKEIV---SKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNE 286
T + TGT ++ W K+ +EI + + +N L + + TK G+Y N
Sbjct: 24 TFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNV 83
Query: 287 AGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSE-PVVVTGKPTPLVTWSHDG 345
AG + S S + V E + + P+ + H+ + G P V W D
Sbjct: 84 AG--KDSCSAQLGVQEPPRFIKKLE----PSRIVKQDEHTRYECKIGGSPEIKVLWYKDE 137
Query: 346 TPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPXXXXXXXXXXXXXXXXXSG 405
T ++E + + + + L + + E++G Y+C A N
Sbjct: 138 TEIQESSKFRM-SFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK------ 190
Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
E P F K PV + L+ + G P + W++ K E+
Sbjct: 191 EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL----------------- 233
Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
S + KIM++ + + I + IG+ C+A N GS T
Sbjct: 234 ------------------RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYT 275
Query: 526 CTATLSL 532
C +++L
Sbjct: 276 CVGSITL 282
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 69/174 (39%), Gaps = 50/174 (28%)
Query: 407 APKFTKPLKPV---IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
AP F LKPV +A +S T K VTG I W + EI P + M
Sbjct: 4 APPFFD-LKPVSVDLALGES-GTFKCHVTGTAPIKITWAKDNREIRPGGNYKM------- 54
Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
++ E N + L + K+T+ G TC A NVAG
Sbjct: 55 ----TLVE------------------------NTATLTVLKVTKGDAGQYTCYASNVAGK 86
Query: 524 VTCTATLSLLPESEVTDVMESPRFIKTPETAKVM-DGQSVLFTAQVGYSERLEI 576
+C+A L V E PRFIK E ++++ + + ++G S +++
Sbjct: 87 DSCSAQLG---------VQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKV 131
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 90/241 (37%), Gaps = 56/241 (23%)
Query: 331 VTGKPTPLVTWSHDGTPMKEGK--EVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPXX 388
VTG +TW+ D ++ G ++T+ ++T L L +++ +AG Y+C A N
Sbjct: 29 VTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTK---GDAGQYTCYASNVAG 85
Query: 389 XXXXXXXXXXXXXXXSGEAPKFTKPLKPV-IAEAQSPATLKATVTGRPTPSICWYRGKEE 447
E P+F K L+P I + + + G P + WY+ + E
Sbjct: 86 KDSCSAQLGVQ------EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETE 139
Query: 448 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITR 507
I + M F V SV +VL + ++
Sbjct: 140 IQESSKFRMSF--------------------VESV---------------AVLEMYNLSV 164
Query: 508 DQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQ 567
+ GD TC A N AGS + + +L V E P F K P + + G V +
Sbjct: 165 EDSGDYTCEAHNAAGSASSSTSLK---------VKEPPVFRKKPHPVETLKGADVHLECE 215
Query: 568 V 568
+
Sbjct: 216 L 216
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/300 (28%), Positives = 135/300 (45%), Gaps = 26/300 (8%)
Query: 5 LAPRFIEKIQPVVSHQE--QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
+AP F + ++PV + F C V G +TW KD E+ +Y +T VE+ +
Sbjct: 3 MAPPFFD-LKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 61
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPV-IAEAQS 121
TL ++ TK D G YTC A+N+ G +CSA L V P+F K L+P I +
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ------APPRFIKKLEPSRIVKQDE 115
Query: 122 PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
+ + G P + WY+ + EI + M F + VL + + +D Y+ +
Sbjct: 116 HTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA--VLEMYNLSVEDSGDYTCE 173
Query: 182 AVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP 241
A N G A +L +V E P + + K + V LE E GTP
Sbjct: 174 AHNAAGSASSSTSL-----------KVKEPPVFRKKPHPVETLKGADVHLECELQGTPPF 222
Query: 242 EVKWFKNGKEIVSK---DIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
+V W K+ +E+ S I +++ +T + I G+Y+ + N+ G GS+T+
Sbjct: 223 QVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 95/194 (48%), Gaps = 11/194 (5%)
Query: 7 PRFIEKIQPV-VSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
PRFI+K++P + Q++ + CK+ G P + W KD TE+ + + ++ VESV+ LE
Sbjct: 99 PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLE 158
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATL 125
+ N + ED G YTC+A N G A+ S +L V E P F K PV + L
Sbjct: 159 MYNLSVEDSGDYTCEAHNAAGSASSSTSLKV------KEPPVFRKKPHPVETLKGADVHL 212
Query: 126 KATVTGRPTPSICWYRGKEEILPDNGHT-MEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
+ + G P + W++ K E+ + M N T +L++ A D Y KA N
Sbjct: 213 ECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSA---DIGEYQCKASN 269
Query: 185 TFGRAECRANLVLR 198
G C ++ L+
Sbjct: 270 DVGSYTCVGSITLK 283
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 117/289 (40%), Gaps = 31/289 (10%)
Query: 105 APKFTKPLKPV---IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
AP F LKPV +A +S T K VTG I W + EI P + M T
Sbjct: 4 APPFFD-LKPVSVDLALGES-GTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 61
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ-A 220
L++ + T D Y+ A N G+ C A L V P ++ L+ +
Sbjct: 62 --TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL-----------GVQAPPRFIKKLEPS 108
Query: 221 LLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTG 277
+V +D E + G+P +V W+K+ EI + ++V L + + + +G
Sbjct: 109 RIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSG 168
Query: 278 KYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWF-IHSEPVVVTGKPT 336
Y N A S S ++ V E R + HP + + +H E + G P
Sbjct: 169 DYTCEAHNAA--GSASSSTSLKVKEPPV----FRKKPHPVETLKGADVHLE-CELQGTPP 221
Query: 337 PLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
V+W D ++ GK+ I + + L + I V + G Y C A N
Sbjct: 222 FQVSWHKDKRELRSGKKYKIMSE-NFLTSIHILNVDSADIGEYQCKASN 269
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/310 (19%), Positives = 110/310 (35%), Gaps = 58/310 (18%)
Query: 230 TLEAEYTGTPTPEVKWFKNGKEIV---SKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNE 286
T + TGT ++ W K+ +EI + + +N L + + TK G+Y N
Sbjct: 24 TFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNV 83
Query: 287 AGEARTSGSVTITVAEAETVMMD----VRVESHPTASFQWFIHSEPVVVTGKPTPLVTWS 342
AG+ S + + ++ V+ + H + + G P V W
Sbjct: 84 AGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYECK---------IGGSPEIKVLWY 134
Query: 343 HDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPXXXXXXXXXXXXXXXX 402
D T ++E + + + + L + + E++G Y+C A N
Sbjct: 135 KDETEIQESSKFRM-SFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK--- 190
Query: 403 XSGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 462
E P F K PV + L+ + G P + W++ K E+
Sbjct: 191 ---EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL-------------- 233
Query: 463 GECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAG 522
S + KIM++ + + I + IG+ C+A N G
Sbjct: 234 ---------------------RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 272
Query: 523 SVTCTATLSL 532
S TC +++L
Sbjct: 273 SYTCVGSITL 282
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 68/174 (39%), Gaps = 50/174 (28%)
Query: 407 APKFTKPLKPV---IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
AP F LKPV +A +S T K VTG I W + EI P + M
Sbjct: 4 APPFFD-LKPVSVDLALGES-GTFKCHVTGTAPIKITWAKDNREIRPGGNYKM------- 54
Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
++ E N + L + K+T+ G TC A NVAG
Sbjct: 55 ----TLVE------------------------NTATLTVLKVTKGDAGQYTCYASNVAGK 86
Query: 524 VTCTATLSLLPESEVTDVMESPRFIKTPETAKVM-DGQSVLFTAQVGYSERLEI 576
+C+A L V PRFIK E ++++ + + ++G S +++
Sbjct: 87 DSCSAQLG---------VQAPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKV 131
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 89/241 (36%), Gaps = 56/241 (23%)
Query: 331 VTGKPTPLVTWSHDGTPMKEGK--EVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPXX 388
VTG +TW+ D ++ G ++T+ ++T L L +++ +AG Y+C A N
Sbjct: 29 VTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTK---GDAGQYTCYASNVAG 85
Query: 389 XXXXXXXXXXXXXXXSGEAPKFTKPLKPV-IAEAQSPATLKATVTGRPTPSICWYRGKEE 447
P+F K L+P I + + + G P + WY+ + E
Sbjct: 86 KDSCSAQLGVQA------PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETE 139
Query: 448 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITR 507
I + M F V SV +VL + ++
Sbjct: 140 IQESSKFRMSF--------------------VESV---------------AVLEMYNLSV 164
Query: 508 DQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQ 567
+ GD TC A N AGS + + +L V E P F K P + + G V +
Sbjct: 165 EDSGDYTCEAHNAAGSASSSTSLK---------VKEPPVFRKKPHPVETLKGADVHLECE 215
Query: 568 V 568
+
Sbjct: 216 L 216
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 96/188 (51%), Gaps = 23/188 (12%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSK-----DIETKDNVT 264
+APT +PLQ+++V + ST T EA +G P PEV WF++G+ I + I D
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV-------MMDVRVESHPT 317
KL I TK +G+Y ++ N +G+A ++ + + +AET + + V
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLV---KAETAPPNFVQRLQSMTVRQGSQ 120
Query: 318 ASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAG 377
Q V VTG PTP+V + DG ++ + I Q+ D L L I+E +PE++G
Sbjct: 121 VRLQ-------VRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGD-LYSLLIAEAYPEDSG 172
Query: 378 LYSCTAVN 385
YS A N
Sbjct: 173 TYSVNATN 180
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 100/198 (50%), Gaps = 11/198 (5%)
Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
+AP FT+PL+ V+ S AT +A ++G P P + W+R + I ++ + + G
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLV 223
L+I T + YS+KA N G+A A L+++ T P V+ LQ++ V
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA--------PPNFVQRLQSMTV 115
Query: 224 PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSK---DIETKDNVTKLVIKQTTKKTTGKYE 280
+ S V L+ TG PTP VK++++G EI S I + ++ L+I + + +G Y
Sbjct: 116 RQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYS 175
Query: 281 IRVVNEAGEARTSGSVTI 298
+ N G A ++ + +
Sbjct: 176 VNATNSVGRATSTAELLV 193
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 101/197 (51%), Gaps = 11/197 (5%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE--HYLITTVESVST 63
AP F + +Q VV + A F + G P+P ++W +DG + + I+ + +
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPA 123
L I TK + G Y+ KATN G AT +A L+V K E+ P F + L+ + S
Sbjct: 65 LTIPAVTKANSGRYSLKATNGSGQATSTAELLV--KAETAP-PNFVQRLQSMTVRQGSQV 121
Query: 124 TLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT-GECV-LSISEATPQDEAVYSVK 181
L+ VTG PTP + +YR EI +++F + G+ L I+EA P+D YSV
Sbjct: 122 RLQVRVTGIPTPVVKFYRDGAEIQ----SSLDFQISQEGDLYSLLIAEAYPEDSGTYSVN 177
Query: 182 AVNTFGRAECRANLVLR 198
A N+ GRA A L+++
Sbjct: 178 ATNSVGRATSTAELLVQ 194
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 72/163 (44%), Gaps = 16/163 (9%)
Query: 331 VTGKPTPLVTWSHDG----TPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNP 386
++G P P V+W DG T G +++ +DG KL I V N+G YS A N
Sbjct: 29 ISGFPVPEVSWFRDGQVISTSTLPGVQISF---SDGRAKLTIPAVTKANSGRYSLKATNG 85
Query: 387 XXXXXXXXXXXXXXXXXSGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE 446
P F + L+ + S L+ VTG PTP + +YR
Sbjct: 86 SGQATSTAELLVKAETA---PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGA 142
Query: 447 EILPDNGHTMEFNPTT-GECV-LSISEATPQDEAVYSVKASST 487
EI +++F + G+ L I+EA P+D YSV A+++
Sbjct: 143 EIQ----SSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNS 181
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%)
Query: 2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESV 61
AE P F++++Q + Q +V G P P + + +DG E+ ++ + I+ +
Sbjct: 99 AETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDL 158
Query: 62 STLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
+L I ED G Y+ ATN G AT +A L+V
Sbjct: 159 YSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
+AP FT+PL+ V+ S AT +A ++G P P + W+R + I ++ + + G
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 466 VLSISEATPQDEAVYSVKASS 486
L+I T + YS+KA++
Sbjct: 64 KLTIPAVTKANSGRYSLKATN 84
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 96/188 (51%), Gaps = 23/188 (12%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSK-----DIETKDNVT 264
+APT +PLQ+++V + ST T EA +G P PEV WF++G+ I + I D
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV-------MMDVRVESHPT 317
KL I TK +G+Y ++ N +G+A ++ + + +AET + + V
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLV---KAETAPPNFVQRLQSMTVRQGSQ 120
Query: 318 ASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAG 377
Q V VTG PTP+V + DG ++ + I Q+ D L L I+E +PE++G
Sbjct: 121 VRLQ-------VRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGD-LYSLLIAEAYPEDSG 172
Query: 378 LYSCTAVN 385
YS A N
Sbjct: 173 TYSVNATN 180
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 100/198 (50%), Gaps = 11/198 (5%)
Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
+AP FT+PL+ V+ S AT +A ++G P P + W+R + I ++ + + G
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLV 223
L+I T + YS+KA N G+A A L+++ T P V+ LQ++ V
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA--------PPNFVQRLQSMTV 115
Query: 224 PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSK---DIETKDNVTKLVIKQTTKKTTGKYE 280
+ S V L+ TG PTP VK++++G EI S I + ++ L+I + + +G Y
Sbjct: 116 RQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYS 175
Query: 281 IRVVNEAGEARTSGSVTI 298
+ N G A ++ + +
Sbjct: 176 VNATNSVGRATSTAELLV 193
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 102/200 (51%), Gaps = 11/200 (5%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE--HYLITTVESVST 63
AP F + +Q VV + A F + G P+P ++W +DG + + I+ + +
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPA 123
L I TK + G Y+ KATN G AT +A L+V K E+ P F + L+ + S
Sbjct: 65 LTIPAVTKANSGRYSLKATNGSGQATSTAELLV--KAETA-PPNFVQRLQSMTVRQGSQV 121
Query: 124 TLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT-GECV-LSISEATPQDEAVYSVK 181
L+ VTG PTP + +YR EI +++F + G+ L I+EA P+D YSV
Sbjct: 122 RLQVRVTGIPTPVVKFYRDGAEIQ----SSLDFQISQEGDLYSLLIAEAYPEDSGTYSVN 177
Query: 182 AVNTFGRAECRANLVLRKAT 201
A N+ GRA A L+++ T
Sbjct: 178 ATNSVGRATSTAELLVQGET 197
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 19/186 (10%)
Query: 331 VTGKPTPLVTWSHDG----TPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNP 386
++G P P V+W DG T G +++ +DG KL I V N+G YS A N
Sbjct: 29 ISGFPVPEVSWFRDGQVISTSTLPGVQISF---SDGRAKLTIPAVTKANSGRYSLKATNG 85
Query: 387 XXXXXXXXXXXXXXXXXSGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE 446
P F + L+ + S L+ VTG PTP + +YR
Sbjct: 86 SGQATSTAELLVKAETA---PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGA 142
Query: 447 EILPDNGHTMEFNPTT-GECV-LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK 504
EI +++F + G+ L I+EA P+D YSV A+++ + + LL+
Sbjct: 143 EIQ----SSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAE---LLVQG 195
Query: 505 ITRDQI 510
TR++
Sbjct: 196 ETREEF 201
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%)
Query: 2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESV 61
AE P F++++Q + Q +V G P P + + +DG E+ ++ + I+ +
Sbjct: 99 AETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDL 158
Query: 62 STLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
+L I ED G Y+ ATN G AT +A L+V
Sbjct: 159 YSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
+AP FT+PL+ V+ S AT +A ++G P P + W+R + I ++ + + G
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 466 VLSISEATPQDEAVYSVKASS 486
L+I T + YS+KA++
Sbjct: 64 KLTIPAVTKANSGRYSLKATN 84
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 121/292 (41%), Gaps = 16/292 (5%)
Query: 8 RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEII 67
RF+ + + + + L C+V G P+PT+ WQK+ +L+ V L+I
Sbjct: 123 RFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQIS 182
Query: 68 NPTKEDIGVYTCKATNIGGVATCS-ANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLK 126
D GVY C A N T + A + +L F + VIA A L+
Sbjct: 183 RLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLE 242
Query: 127 ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF 186
V+G P PS W RG+E I + +++ G +L IS T D Y+ V T+
Sbjct: 243 CCVSGYPPPSFTWLRGEEVI---QLRSKKYSLLGGSNLL-ISNVTDDDSGTYT--CVVTY 296
Query: 187 GRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWF 246
A+ L T + P L P+ + +++ + E +G P P V W
Sbjct: 297 KNENISASAEL---TVLVPPWFLNHPSNLYAYESM------DIEFECAVSGKPVPTVNWM 347
Query: 247 KNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
KNG ++ D + L I K G Y+ NEAG A++S + +
Sbjct: 348 KNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVST 63
++ P F+ + +++ F C V G P+PT+ W K+G + ++++ I S
Sbjct: 310 LVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIV---GGSN 366
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
L I+ K D G Y C A N G A SA LIV
Sbjct: 367 LRILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 65/175 (37%), Gaps = 12/175 (6%)
Query: 331 VTGKPTPLVTWS---HDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPX 387
V G P P + W D P+ V + L IS + P ++G+Y C+A NP
Sbjct: 145 VIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG----ALQISRLQPGDSGVYRCSARNPA 200
Query: 388 XXXXXXXXXXXXXXXXS-GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE 446
F + VIA A L+ V+G P PS W RG+E
Sbjct: 201 STRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEE 260
Query: 447 EILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL 501
I + +++ G +L IS T D Y+ + I +VL+
Sbjct: 261 VI---QLRSKKYSLLGGSNLL-ISNVTDDDSGTYTCVVTYKNENISASAELTVLV 311
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 92/278 (33%), Gaps = 52/278 (18%)
Query: 228 TVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVT---KLVIKQTTKKTTGKYEIRVV 284
TV L+ E G P P + W KN +++ +++ V L I + +G Y
Sbjct: 138 TVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSAR 197
Query: 285 NEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEP--------------VV 330
N A T T EAE VR+ S P Q + P
Sbjct: 198 NPAS--------TRTGNEAE-----VRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECC 244
Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTD----GLCKLAISEVFPENAGLYSCTAVNP 386
V+G P P TW G+EV + G L IS V +++G Y+C
Sbjct: 245 VSGYPPPSFTW-------LRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYK 297
Query: 387 XXXXXXXXXXXXXXXXXSGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE 446
P F + A + V+G+P P++ W + +
Sbjct: 298 NENISASAELTVLV------PPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGD 351
Query: 447 EILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 484
++P ++ G L I DE Y A
Sbjct: 352 VVIPS-----DYFQIVGGSNLRILGVVKSDEGFYQCVA 384
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 63/175 (36%), Gaps = 22/175 (12%)
Query: 334 KPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPE-----NAGLYSCTAVNPXX 388
+ P++ W DG + G + Q +G L I + + GLY C A
Sbjct: 49 RGVPVIKWKKDGLILALGMDDRKQQLPNG--SLLIQNILHSRHHKPDEGLYQCEA---SL 103
Query: 389 XXXXXXXXXXXXXXXSGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEI 448
+G +F + + A LK V G P P+I W + ++++
Sbjct: 104 GDSGSIISRTAKVMVAGPL-RFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDL 162
Query: 449 LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS---------TETKIMTD 494
P G + +G L IS P D VY A + E +I++D
Sbjct: 163 NPIPGDSRVVVLPSG--ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSD 215
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 89/192 (46%), Gaps = 16/192 (8%)
Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
SGEAP K +K V + A L + GRP P I WYR +E++ + M + T
Sbjct: 4 SGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRT- 62
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQAL 221
L++ +DE VY+ A N G E + L+L +AT P PL+
Sbjct: 63 -HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLL-QATPQFHPGY--------PLKEK 112
Query: 222 LVPK-DSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKT-T 276
ST+ L Y G P P + WF K + + + IE ++ T LV+K +KT
Sbjct: 113 YYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHA 172
Query: 277 GKYEIRVVNEAG 288
GKY++++ N G
Sbjct: 173 GKYKVQLSNVFG 184
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 84/187 (44%), Gaps = 14/187 (7%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
AP ++++ V + + A +C++ G PLP + W + G EL + Y +++ TL
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 66 IINPTKEDIGVYTCKATN-IGGVATCSANLIVLEKEESGEAPKFT--KPLK-PVIAEAQS 121
++ +ED GVYTC ATN +G V T S L+ P+F PLK S
Sbjct: 67 VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQ-------ATPQFHPGYPLKEKYYGAVGS 119
Query: 122 PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEA-VYSV 180
L GRP P++ W+ G++ L N + T L + + A Y V
Sbjct: 120 TLRLHVMYIGRPVPAMTWFHGQK--LLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKV 177
Query: 181 KAVNTFG 187
+ N FG
Sbjct: 178 QLSNVFG 184
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 75/180 (41%), Gaps = 8/180 (4%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSK---DIETKDNVTKL 266
EAP I + ++ + L + G P P++KW++ GKE++ + + L
Sbjct: 6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTL 65
Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHS 326
+ ++ G Y NE GE TS + + ++ + + +H
Sbjct: 66 TVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLH- 124
Query: 327 EPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPE-NAGLYSCTAVN 385
V+ G+P P +TW H ++ + +TI ++T+ L + V + +AG Y N
Sbjct: 125 --VMYIGRPVPAMTWFHGQKLLQNSENITI-ENTEHYTHLVMKNVQRKTHAGKYKVQLSN 181
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 404 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
SGEAP K +K V + A L + GRP P I WYR +E++ + M + T
Sbjct: 4 SGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRT- 62
Query: 464 ECVLSISEATPQDEAVYSVKASS 486
L++ +DE VY+ A++
Sbjct: 63 -HTLTVMTEEQEDEGVYTCIATN 84
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 12/120 (10%)
Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCK-LAISEVFPENAGLYSCTAVNPXXX 389
+ G+P P + W G + + ++ + +DG L + E+ G+Y+C A N
Sbjct: 31 IVGRPLPDIKWYRFGKELIQSRKYKM--SSDGRTHTLTVMTEEQEDEGVYTCIATNEVGE 88
Query: 390 XXXXXXXXXXXXXXSGEAPKFT--KPLK-PVIAEAQSPATLKATVTGRPTPSICWYRGKE 446
P+F PLK S L GRP P++ W+ G++
Sbjct: 89 VETSSKLLLQA------TPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQK 142
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 125/299 (41%), Gaps = 23/299 (7%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
PRFI++ + + A F C+ G P P +TW K G ++++ I ES +
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 67 INP--TKEDIGVYTCKATNIGGVATCSANLIVLEKEE--SGEAPKFTKPLKPVIAEAQSP 122
I P T D VY C A N G T A L VL +++ SG P + + E
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSG-FPNIDMGPQLKVVERTRT 125
Query: 123 ATLKATVTGRPTPSICWYRGKEEILP--DNGHTMEFNPTTGECVLSISEATPQDEAVYSV 180
AT+ +G P P I W++ + P NG + +G + SE T D+ Y
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLR--SGALQIESSEET--DQGKYEC 181
Query: 181 KAVNTFG-RAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTP 239
A N+ G R ANL +R + +L P+ ++P V + G+P
Sbjct: 182 VATNSAGVRYSSPANLYVRVQNVAPRFSIL-------PMSHEIMP-GGNVNITCVAVGSP 233
Query: 240 TPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
P VKW + +++ +D V + V++ T K + Y ++ G +T+
Sbjct: 234 MPYVKWMQGAEDLTPEDDMP---VGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITV 289
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 118/292 (40%), Gaps = 30/292 (10%)
Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
E P+F K K I + A+ TG P P + W + +++ T+EF+ + G
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLV 223
+ TP+DE VY A N+ G A L + + + P I Q +V
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPS----GFPNIDMGPQLKVV 120
Query: 224 PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK------LVIKQTTKKTTG 277
+ T T+ +G P PE+ WF K+ + D + K L I+ + + G
Sbjct: 121 ERTRTATMLCAASGNPDPEITWF---KDFLPVDPSASNGRIKQLRSGALQIESSEETDQG 177
Query: 278 KYEIRVVNEAGEARTSGS---VTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGK 334
KYE N AG +S + V + ++ + E P + V G
Sbjct: 178 KYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNIT-----CVAVGS 232
Query: 335 PTPLVTWSHDGTPMKEGKEVTIYQDTD-GLCKLAISEVFPENAGLYSCTAVN 385
P P V W M+ +++T D G L +++V +++ Y+C A++
Sbjct: 233 PMPYVKW------MQGAEDLTPEDDMPVGRNVLELTDV--KDSANYTCVAMS 276
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 103/274 (37%), Gaps = 45/274 (16%)
Query: 234 EYTGTPTPEVKWFKNGKEIVSKDIET--KDNVTKLVIK---QTTKKTTGKYEIRVVNEAG 288
+ TG P P V W K GK++ S+ ET D V++ T + YE N G
Sbjct: 29 QATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVG 88
Query: 289 EARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVV------------TGKPT 336
E ITV TV+ R + P+ + + VV +G P
Sbjct: 89 E--------ITVHAKLTVL---REDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPD 137
Query: 337 PLVTWSHDGTPMK-EGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPXXXXXXXXX 395
P +TW D P+ I Q G ++ SE + G Y C A N
Sbjct: 138 PEITWFKDFLPVDPSASNGRIKQLRSGALQIESSE--ETDQGKYECVATN--SAGVRYSS 193
Query: 396 XXXXXXXXSGEAPKFTKPLKPVIAEAQSPATLKAT--VTGRPTPSICWYRGKEEILPDNG 453
AP+F+ + P+ E + T G P P + W +G E++ P++
Sbjct: 194 PANLYVRVQNVAPRFS--ILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDD 251
Query: 454 HTMEFNPTTGECVLSISEATPQDEAVYSVKASST 487
+ G VL +++ +D A Y+ A S+
Sbjct: 252 MPV------GRNVLELTDV--KDSANYTCVAMSS 277
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%)
Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
E P+F K K I + A+ TG P P + W + +++ T+EF+ + G
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL 500
+ TP+DE VY A ++ +I +VL
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVL 99
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 112/281 (39%), Gaps = 24/281 (8%)
Query: 25 LFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI 84
FTC G P + G ++ +T+ ++ S L I N ED G+Y C+AT+
Sbjct: 23 FFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA 82
Query: 85 GGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE 144
G T A +++ E + F + + P + A + V+ P P++ W E
Sbjct: 83 KG-QTQEATVVL----EIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNE 137
Query: 145 EI--LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATT 202
E+ + DN M L I DE +Y + GR E R + R
Sbjct: 138 EVTTISDNRFAM-----LANNNLQILNINKSDEGIYRCE-----GRVEARGEIDFRDIIV 187
Query: 203 IDKPRVLEAPTIVRPLQAL--LVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-IET 259
I V P I P ++ + +T +G+P P + WF+NGK I +
Sbjct: 188 I----VNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL 243
Query: 260 KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
K + T+L ++ G Y R N+AGE + + V
Sbjct: 244 KGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 284
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 75/189 (39%), Gaps = 11/189 (5%)
Query: 9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIIN 68
F E + P Q + A C+V P P ++W E+ + + + L+I+N
Sbjct: 101 FREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAML-ANNNLQILN 159
Query: 69 PTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQS--PATLK 126
K D G+Y C+ ++IV+ P + P K A A+ T
Sbjct: 160 INKSDEGIYRCEGRVEARGEIDFRDIIVI----VNVPPAISMPQKSFNATAERGEEMTFS 215
Query: 127 ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF 186
+G P P+I W+R + I + + ++ + T L++ D Y +A N
Sbjct: 216 CRASGSPEPAISWFRNGKLIEENEKYILKGSNTE----LTVRNIINSDGGPYVCRATNKA 271
Query: 187 GRAECRANL 195
G E +A L
Sbjct: 272 GEDEKQAFL 280
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 42/128 (32%), Gaps = 39/128 (30%)
Query: 408 PKFTKPLKPVIAEAQS--PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
P + P K A A+ T +G P P+I W+R NG +E N
Sbjct: 193 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR--------NGKLIEENEK---- 240
Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
Y +K S+TE L + I G CRA N AG
Sbjct: 241 --------------YILKGSNTE-----------LTVRNIINSDGGPYVCRATNKAGEDE 275
Query: 526 CTATLSLL 533
A L +
Sbjct: 276 KQAFLQVF 283
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 145/371 (39%), Gaps = 38/371 (10%)
Query: 22 QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81
+PA+FTC+ G+P+ T++W KDG + +E S L I + KED G+Y C
Sbjct: 359 RPAVFTCQYTGNPIKTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQCFV 408
Query: 82 TNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICW-Y 140
N A SA L + + + P + + E LK G PTP I W
Sbjct: 409 RNDRESAEASAELKLGGRF---DPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWEL 465
Query: 141 RGKEEILPDNGHTMEFNPTTGECV--LSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198
GK+ D ++ G+ V L+I+ D +Y A + G AE A L
Sbjct: 466 DGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKL--- 522
Query: 199 KATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEI-VSKDI 257
V P I R ++ + T+ + G P + W ++ + + +++
Sbjct: 523 --------NVYGLPYI-RQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQ 573
Query: 258 ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAG-EARTSGSVTITVAEAETVMMDVRVESHP 316
+ N T ++ Y N+ G AR S V + V ++ E P
Sbjct: 574 KVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPR---IIPFAFEEGP 630
Query: 317 TASFQWF-IHSEPVVVTGKPTPL-VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPE 374
Q+ +H V G PL + W+ DG + E +T + L I V
Sbjct: 631 AQVGQYLTLHCS---VPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEAS 687
Query: 375 NAGLYSCTAVN 385
+AG ++C A N
Sbjct: 688 HAGNFTCHARN 698
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 81/326 (24%), Positives = 120/326 (36%), Gaps = 62/326 (19%)
Query: 26 FTCKVEGHPLPTMTWQK--DGTELHATEHYLITTVESVS-TLEIINPTKEDIGVYTCKAT 82
C +G+P+P W K +GT L V+ VS TL I + ED G Y C
Sbjct: 268 LLCPAQGYPVPVFRWYKFIEGT-TRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVN 326
Query: 83 N-IGG-----VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPS 136
N +GG V T +A L + K P + V + PA TG P +
Sbjct: 327 NSVGGESVETVLTVTAPL----------SAKIDPPTQTV--DFGRPAVFTCQYTGNPIKT 374
Query: 137 ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
+ W + + I GH+ E VL I +D+ +Y N AE A L
Sbjct: 375 VSWMKDGKAI----GHS--------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELK 422
Query: 197 LRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD 256
L + P I + Q + +V L+ G PTPE+ W +GK+I + D
Sbjct: 423 LGGR--------FDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANND 474
Query: 257 --------IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI---------- 298
D V+ L I G Y+ ++ G A S + +
Sbjct: 475 RYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQME 534
Query: 299 --TVAEAETVMMDVRVESHPTASFQW 322
+ ET+++ V +P S W
Sbjct: 535 KKAIVAGETLIVTCPVAGYPIDSIVW 560
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 92/272 (33%), Gaps = 36/272 (13%)
Query: 227 STVTLEAEYTGTPTPEVKWFK-----NGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEI 281
ST+ L G P P +W+K K+ V + K L+IK + +GKY
Sbjct: 264 STMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLC 323
Query: 282 RVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVT----GKPTP 337
V N G +T+T + + PT + + P V T G P
Sbjct: 324 VVNNSVGGESVETVLTVTAPLSAKI-------DPPTQTVDF---GRPAVFTCQYTGNPIK 373
Query: 338 LVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPXXXXXXXXXXX 397
V+W DG + + V L I V E+ G+Y C N
Sbjct: 374 TVSWMKDGKAIGHSESV-----------LRIESVKKEDKGMYQCFVRNDRESAEASAELK 422
Query: 398 XXXXXXSGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICW-YRGKEEILPDNGHTM 456
+ P + + E LK G PTP I W GK+ D
Sbjct: 423 LGGRF---DPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVG 479
Query: 457 EFNPTTGECV--LSISEATPQDEAVYSVKASS 486
++ G+ V L+I+ D +Y A S
Sbjct: 480 QYVTVNGDVVSYLNITSVHANDGGLYKCIAKS 511
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK-------DGTELHATEHYLITTVE 59
PR+I + Q A CK +G P P +TW+K + +L +++ +
Sbjct: 715 PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEE-- 772
Query: 60 SVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVL 97
TL + N K + G Y C+A N G+ + + +I++
Sbjct: 773 --GTLHVDNIQKTNEGYYLCEAIN--GIGSGLSAVIMI 806
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 98/214 (45%), Gaps = 6/214 (2%)
Query: 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE-HYLITTVE-SVS 62
+AP F E+++ + + A CKV GHP P + W + G E+ A Y I +
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
L I + T +D VY +ATN GG + +A+L V E PK + + V A
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEV-EVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182
++K +G+P P I W +G ++++ +NGH + ++ + +D Y V A
Sbjct: 122 VSIKIPFSGKPDPVITWQKG-QDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180
Query: 183 VNTFGRAECRANLVLRKATTIDKPRVLEAPTIVR 216
N FG + L + A D PR ++ + R
Sbjct: 181 KNRFGIDQKTVELDV--ADVPDPPRGVKVSDVSR 212
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 71/154 (46%), Gaps = 11/154 (7%)
Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN--GHTMEFNPTTGE 162
AP F + L+ + QS ATL VTG P P + WYR +EI+ D EF G
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFK--GGY 61
Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALL 222
L I+ T D VY V+A N G A+L + I P+ LE V L+
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRG-- 119
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD 256
V+++ ++G P P + W K G++++ +
Sbjct: 120 ----EVVSIKIPFSGKPDPVITWQK-GQDLIDNN 148
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN--GHTMEFNPTTGE 464
AP F + L+ + QS ATL VTG P P + WYR +EI+ D EF G
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFK--GGY 61
Query: 465 CVLSISEATPQDEAVYSVKASS 486
L I+ T D VY V+A++
Sbjct: 62 HQLIIASVTDDDATVYQVRATN 83
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 3/125 (2%)
Query: 331 VTGKPTPLVTWSHDGTPM-KEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPXXX 389
VTG P P+V W G + +G + I + G +L I+ V ++A +Y A N
Sbjct: 28 VTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGS 87
Query: 390 XXXXXXXXXXXXXXSGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEIL 449
PK + + V A ++K +G+P P I W +G ++++
Sbjct: 88 VSGTASLEVEVPAKI-HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKG-QDLI 145
Query: 450 PDNGH 454
+NGH
Sbjct: 146 DNNGH 150
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 84/221 (38%), Gaps = 34/221 (15%)
Query: 2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESV 61
A++ P+ +E + V + + + G P P +TWQK + HY + S
Sbjct: 100 AKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSF 159
Query: 62 STLEIINPT-KEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ 120
++L N ++D G Y A N G+ + L V + P
Sbjct: 160 TSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV------ADVP-------------D 200
Query: 121 SPATLKATVTGRPTPSICWYRGKEEILPDNG-----HTMEFNPTTGECVLSISEATPQDE 175
P +K + R + ++ W E D G + +E TT E L + +A E
Sbjct: 201 PPRGVKVSDVSRDSVNLTW----TEPASDGGSKITNYIVEKCATTAERWLRVGQAR---E 253
Query: 176 AVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVR 216
Y+V +N FG+ + ++ + KP PTI +
Sbjct: 254 TRYTV--INLFGKTSYQFRVIAENKFGLSKPSEPSEPTITK 292
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 4/185 (2%)
Query: 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE-HYLITTVE-SVS 62
+AP F E+++ + + A CKV GHP P + W + G E+ A Y I +
Sbjct: 1 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 60
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
L I + T +D VY +ATN GG + +A+L V E PK + + V A
Sbjct: 61 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEV-EVPAKIHLPKTLEGMGAVHALRGEV 119
Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182
++K +G+P P I W +G ++++ +NGH + ++ + +D Y V A
Sbjct: 120 VSIKIPFSGKPDPVITWQKG-QDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 178
Query: 183 VNTFG 187
N FG
Sbjct: 179 KNRFG 183
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 11/163 (6%)
Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN--GHTMEFNPTTGE 162
AP F + L+ + QS ATL VTG P P + WYR +EI+ D EF G
Sbjct: 2 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFK--GGY 59
Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALL 222
L I+ T D VY V+A N G A+L + I P+ LE V L+
Sbjct: 60 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRG-- 117
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK 265
V+++ ++G P P + W K G++++ + + VT+
Sbjct: 118 ----EVVSIKIPFSGKPDPVITWQK-GQDLIDNNGHYQVIVTR 155
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 28/191 (14%)
Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDI-----ETKDNVTK 265
AP L+ L V S TL + TG P P VKW++ GKEI++ + E K +
Sbjct: 2 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 61
Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTA-SFQWFI 324
L+I T Y++R N+ G SG+ ++ V + + +E + + +
Sbjct: 62 LIIASVTDDDATVYQVRATNQGGS--VSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 119
Query: 325 HSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAI-----SEVFP-----E 374
S + +GKP P++TW ++G+++ D +G ++ + S VFP +
Sbjct: 120 VSIKIPFSGKPDPVITW-------QKGQDLI---DNNGHYQVIVTRSFTSLVFPNGVERK 169
Query: 375 NAGLYSCTAVN 385
+AG Y A N
Sbjct: 170 DAGFYVVCAKN 180
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN--GHTMEFNPTTGE 464
AP F + L+ + QS ATL VTG P P + WYR +EI+ D EF G
Sbjct: 2 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFK--GGY 59
Query: 465 CVLSISEATPQDEAVYSVKASS 486
L I+ T D VY V+A++
Sbjct: 60 HQLIIASVTDDDATVYQVRATN 81
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 3/125 (2%)
Query: 331 VTGKPTPLVTWSHDGTPM-KEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPXXX 389
VTG P P+V W G + +G + I + G +L I+ V ++A +Y A N
Sbjct: 26 VTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGS 85
Query: 390 XXXXXXXXXXXXXXSGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEIL 449
PK + + V A ++K +G+P P I W +G ++++
Sbjct: 86 VSGTASLEVEVPAKI-HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKG-QDLI 143
Query: 450 PDNGH 454
+NGH
Sbjct: 144 DNNGH 148
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Query: 2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESV 61
A++ P+ +E + V + + + G P P +TWQK + HY + S
Sbjct: 98 AKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSF 157
Query: 62 STLEIINPT-KEDIGVYTCKATNIGGVATCSANLIVLE 98
++L N ++D G Y A N G+ + L V +
Sbjct: 158 TSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD 195
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 4/185 (2%)
Query: 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE-HYLITTVE-SVS 62
+AP F E+++ + + A CKV GHP P + W + G E+ A Y I +
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
L I + T +D VY +ATN GG + +A+L V E PK + + V A
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEV-EVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182
++K +G+P P I W +G ++++ +NGH + ++ + +D Y V A
Sbjct: 122 VSIKIPFSGKPDPVITWQKG-QDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180
Query: 183 VNTFG 187
N FG
Sbjct: 181 KNRFG 185
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 11/163 (6%)
Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN--GHTMEFNPTTGE 162
AP F + L+ + QS ATL VTG P P + WYR +EI+ D EF G
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFK--GGY 61
Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALL 222
L I+ T D VY V+A N G A+L + I P+ LE V L+
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRG-- 119
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK 265
V+++ ++G P P + W K G++++ + + VT+
Sbjct: 120 ----EVVSIKIPFSGKPDPVITWQK-GQDLIDNNGHYQVIVTR 157
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 28/191 (14%)
Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDI-----ETKDNVTK 265
AP L+ L V S TL + TG P P VKW++ GKEI++ + E K +
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTA-SFQWFI 324
L+I T Y++R N+ G SG+ ++ V + + +E + + +
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGS--VSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 325 HSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAI-----SEVFP-----E 374
S + +GKP P++TW ++G+++ D +G ++ + S VFP +
Sbjct: 122 VSIKIPFSGKPDPVITW-------QKGQDLI---DNNGHYQVIVTRSFTSLVFPNGVERK 171
Query: 375 NAGLYSCTAVN 385
+AG Y A N
Sbjct: 172 DAGFYVVCAKN 182
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN--GHTMEFNPTTGE 464
AP F + L+ + QS ATL VTG P P + WYR +EI+ D EF G
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFK--GGY 61
Query: 465 CVLSISEATPQDEAVYSVKASS 486
L I+ T D VY V+A++
Sbjct: 62 HQLIIASVTDDDATVYQVRATN 83
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 3/125 (2%)
Query: 331 VTGKPTPLVTWSHDGTPM-KEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPXXX 389
VTG P P+V W G + +G + I + G +L I+ V ++A +Y A N
Sbjct: 28 VTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGS 87
Query: 390 XXXXXXXXXXXXXXSGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEIL 449
PK + + V A ++K +G+P P I W +G ++++
Sbjct: 88 VSGTASLEVEVPAKI-HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKG-QDLI 145
Query: 450 PDNGH 454
+NGH
Sbjct: 146 DNNGH 150
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Query: 2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESV 61
A++ P+ +E + V + + + G P P +TWQK + HY + S
Sbjct: 100 AKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSF 159
Query: 62 STLEIINPT-KEDIGVYTCKATNIGGVATCSANLIVLE 98
++L N ++D G Y A N G+ + L V +
Sbjct: 160 TSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD 197
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 135/332 (40%), Gaps = 41/332 (12%)
Query: 25 LFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPT----KEDIGVYTCK 80
L C+ +G+P P+ W ++ + + ++ TL I + +E G Y C
Sbjct: 36 LIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCF 95
Query: 81 ATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT-GRPTPSICW 139
A N G A +N I L+ +S PK + L PV+ + +P TL+ G P+P I W
Sbjct: 96 ARNKFGTAL--SNRIRLQVSKSPLWPK--ENLDPVVVQEGAPLTLQCNPPPGLPSPVIFW 151
Query: 140 YRGKEEILPDN-----GHTMEFNPTTGECVLSISEATPQD-EAVYSVKAVNTFGRAECRA 193
E + + GH + L S QD + YS A F +
Sbjct: 152 MSSSMEPITQDKRVSQGHNGD---------LYFSNVMLQDMQTDYSCNARFHFTHTIQQK 202
Query: 194 NLVLRKATTIDKPRVLEAPTIVRP---LQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGK 250
N K T + P+ + P + +V + + LE +G PTP++ W+K G
Sbjct: 203 NPFTLKVLTT-RGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGG 261
Query: 251 EIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSV-------------T 297
++ S + ++ L I +++ +G+Y N+ G R + SV
Sbjct: 262 DLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKN 321
Query: 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPV 329
+ +A E + R +P + QW ++ EP+
Sbjct: 322 LILAPGEDGRLVCRANGNPKPTVQWMVNGEPL 353
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 66/176 (37%), Gaps = 18/176 (10%)
Query: 125 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
L+ +G PTP I WY+ ++ D FN L I+ + +D Y A N
Sbjct: 242 LECIASGVPTPDIAWYKKGGDLPSDKAKFENFNK-----ALRITNVSEEDSGEYFCLASN 296
Query: 185 TFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVK 244
G +R ++ RV AP + + L++ L G P P V+
Sbjct: 297 KMGS--------IRHTISV---RVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQ 345
Query: 245 WFKNGKEIVSKDIETKDNVTK--LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
W NG+ + S V ++ + T + Y+ NE G + V++
Sbjct: 346 WMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 110/292 (37%), Gaps = 39/292 (13%)
Query: 221 LLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEI-VSKD--IETKDNVTKLVIKQTT----K 273
++ P+D+ + +E E G P P W +N + ++KD + + LVI + +
Sbjct: 28 IVDPRDN-ILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPE 86
Query: 274 KTTGKYEIRVVNEAGEARTSGSVTITVAEA-----ETVMMDVRVESHPTASFQWFIHSEP 328
+ G+Y+ N+ G A S + + V+++ E + V E P + P
Sbjct: 87 EYEGEYQCFARNKFGTA-LSNRIRLQVSKSPLWPKENLDPVVVQEGAPLT-----LQCNP 140
Query: 329 VVVTGKPTPLVTW-SHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGL-YSCTA--- 383
G P+P++ W S P+ + K V+ + D L S V ++ YSC A
Sbjct: 141 P--PGLPSPVIFWMSSSMEPITQDKRVSQGHNGD----LYFSNVMLQDMQTDYSCNARFH 194
Query: 384 -VNPXXXXXXXXXXXXXXXXXSGEAPKFTKPLKPVIAEA---QSPATLKATVTGRPTPSI 439
+ + P F P ++ L+ +G PTP I
Sbjct: 195 FTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDI 254
Query: 440 CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKI 491
WY+ ++ D FN L I+ + +D Y AS+ I
Sbjct: 255 AWYKKGGDLPSDKAKFENFNK-----ALRITNVSEEDSGEYFCLASNKMGSI 301
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
AP ++++ + ++ + C+ G+P PT+ W +G L + V T+
Sbjct: 312 APYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAG-DTII 370
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
+ VY C +N G +A + VL+
Sbjct: 371 FRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 99/377 (26%), Positives = 147/377 (38%), Gaps = 43/377 (11%)
Query: 21 EQPALFTCKVEGHPLPTMTWQKDGTELH---ATEHYLITTVESVSTLEIINPTK-EDIGV 76
E+ L C+ P T W+ +GTE+ + H L+ L I+NPTK +D GV
Sbjct: 21 EEQVLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVG-----GNLVIMNPTKAQDAGV 75
Query: 77 YTCKATN-IGGVATCSANLIVLEKEESGEAPKFTKPLK-PVIAEAQSPATLKATVTGR-P 133
Y C A+N +G V + A L G +F+K + PV A L P
Sbjct: 76 YQCLASNPVGTVVSREAIL------RFGFLQEFSKEERDPVKAHEGWGVMLPCNPPAHYP 129
Query: 134 TPSICWYRGK-EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECR 192
S W + +P +G + TTG L I+ D YS A + +
Sbjct: 130 GLSYRWLLNEFPNFIPTDGRHF-VSQTTGN--LYIARTNASDLGNYSCLATSHMDFSTKS 186
Query: 193 ANLVLRKATTIDKPRVLEAPTIVRPLQA---LLVPKDSTVTLEAEYTGTPTPEVKWFK-N 248
+ + L AP+I A LV + VTLE G P P +KW K +
Sbjct: 187 VFSKFAQLNLAAEDTRLFAPSIKARFPAETYALVGQQ--VTLECFAFGNPVPRIKWRKVD 244
Query: 249 GKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMM 308
G +S T + L I + + G YE N G G + I A+ E + +
Sbjct: 245 GS--LSPQWTTAE--PTLQIPSVSFEDEGTYECEAENSKGRDTVQGRI-IVQAQPEWLKV 299
Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAI 368
E+ ++ +W GKP P V W +G P+ V + KL++
Sbjct: 300 ISDTEADIGSNLRW-----GCAAAGKPRPTVRWLRNGEPLASQNRVEVLAGDLRFSKLSL 354
Query: 369 SEVFPENAGLYSCTAVN 385
E++G+Y C A N
Sbjct: 355 -----EDSGMYQCVAEN 366
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 78/198 (39%), Gaps = 21/198 (10%)
Query: 1 MAEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES 60
A + RF + +V Q C G+P+P + W+K L TT E
Sbjct: 204 FAPSIKARFPAETYALVGQQ---VTLECFAFGNPVPRIKWRKVDGSLSPQ----WTTAEP 256
Query: 61 VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ 120
TL+I + + ED G Y C+A N G T +IV + P++ K + A+
Sbjct: 257 --TLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQ------PEWLKVISDTEADIG 308
Query: 121 SPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 180
S G+P P++ W R E + N G+ L S+ + +D +Y
Sbjct: 309 SNLRWGCAAAGKPRPTVRWLRNGEPLASQN----RVEVLAGD--LRFSKLSLEDSGMYQC 362
Query: 181 KAVNTFGRAECRANLVLR 198
A N G A L ++
Sbjct: 363 VAENKHGTIYASAELAVQ 380
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 96/379 (25%), Positives = 142/379 (37%), Gaps = 47/379 (12%)
Query: 21 EQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTK-EDIGVYTC 79
E+ TC+ +P T W+ +GTEL V L I NP K +D G Y C
Sbjct: 22 EEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV--AGDLVISNPVKAKDAGSYQC 79
Query: 80 KATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATL----KATVTGRPTP 135
ATN G S EA L+ AE + P + T P P
Sbjct: 80 VATNARGTVV------------SREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPP 127
Query: 136 -----SICWYRGK-EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRA 189
S W + +P +G + TTG ++ +EA+ D YS A +
Sbjct: 128 HYPALSYRWLLNEFPNFIPADGRRF-VSQTTGNLYIAKTEAS--DLGNYSCFATSHIDFI 184
Query: 190 ECRANLVLRKATTIDKPRVLEAPTIVRPLQA-LLVPKDSTVTLEAEYTGTPTPEVKWFKN 248
+ + + AP+I A VTLE G P P++KW K
Sbjct: 185 TKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKL 244
Query: 249 GKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMM 308
SK + ++ L I+ + G YE N G G + I A+ +
Sbjct: 245 DGSQTSKWLSSE---PLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII---HAQPDWL 298
Query: 309 DV--RVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKL 366
DV E+ + +W V +GKP P V W DG P+ + + + G +L
Sbjct: 299 DVITDTEADIGSDLRW-----SCVASGKPRPAVRWLRDGQPLASQNRIEV---SGG--EL 348
Query: 367 AISEVFPENAGLYSCTAVN 385
S++ E++G+Y C A N
Sbjct: 349 RFSKLVLEDSGMYQCVAEN 367
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 20/172 (11%)
Query: 28 CKVEGHPLPTMTWQK-DGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGG 86
C G+P+P + W+K DG++ T +L S L I N ED G Y C+A NI G
Sbjct: 229 CFAFGNPVPQIKWRKLDGSQ---TSKWL----SSEPLLHIQNVDFEDEGTYECEAENIKG 281
Query: 87 VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEI 146
T +I+ + P + + A+ S +G+P P++ W R + +
Sbjct: 282 RDTYQGRIIIHAQ------PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPL 335
Query: 147 LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198
N + GE L S+ +D +Y A N G A L ++
Sbjct: 336 ASQN----RIEVSGGE--LRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 152/390 (38%), Gaps = 36/390 (9%)
Query: 6 APRFIEKIQPV---VSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
P F+++ V + +E+ +C+V+G+P P + W+ +GT++ + + V+
Sbjct: 4 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG-- 61
Query: 63 TLEIINPTK-EDIGVYTCKATN-IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ 120
+L I NP K +D G Y C ATN G + + A L E + T ++ Q
Sbjct: 62 SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVR----RGQ 117
Query: 121 SPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 180
L S W + DN + + TG L I++ D Y+
Sbjct: 118 GMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFV--SQETGN--LYIAKVEKSDVGNYTC 173
Query: 181 KAVNTFGRAECRAN---LVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG 237
NT + L+LR + + E V+ + + K +TV LE G
Sbjct: 174 VVTNTVTNHKVLGPPTPLILRNDGVMGE---YEPKIEVQFPETVPAEKGTTVKLECFALG 230
Query: 238 TPTPEVKWFK-NGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSV 296
P P + W + +GK I K K N L I ++ G YE N G+ G +
Sbjct: 231 NPVPTILWRRADGKPIARKARRHKSNGI-LEIPNFQQEDAGSYECVAENSRGKNVAKGQL 289
Query: 297 TITVA-EAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVT 355
T ++ D+ V + ++ G+P P W +G P+ +
Sbjct: 290 TFYAQPNWVQIINDIHVAMEESVFWE-------CKANGRPKPTYRWLKNGDPLLTRDRIQ 342
Query: 356 IYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
I Q T L I+ V +AG+Y C A N
Sbjct: 343 IEQGT-----LNITIVNLSDAGMYQCVAEN 367
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 92/246 (37%), Gaps = 24/246 (9%)
Query: 59 ESVSTLEIINPTKEDIGVYTCKATNI---GGVATCSANLIVLEKEESGEA-PKFTKPL-K 113
+ L I K D+G YTC TN V LI+ GE PK +
Sbjct: 153 QETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPE 212
Query: 114 PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQ 173
V AE + L+ G P P+I W R + + + N +L I +
Sbjct: 213 TVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSN-----GILEIPNFQQE 267
Query: 174 DEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEA 233
D Y A N+ G+ + L P V+ + + V + +V E
Sbjct: 268 DAGSYECVAENSRGKNVAKGQLTF-----------YAQPNWVQIINDIHVAMEESVFWEC 316
Query: 234 EYTGTPTPEVKWFKNGKEIVSKD-IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART 292
+ G P P +W KNG ++++D I+ + + I + G Y+ N+ G +
Sbjct: 317 KANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSD--AGMYQCVAENKHGVIFS 374
Query: 293 SGSVTI 298
S +++
Sbjct: 375 SAELSV 380
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
P +++ I + E+ + CK G P PT W K+G L + I TL I
Sbjct: 295 PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQ----GTLNI 350
Query: 67 INPTKEDIGVYTCKATNIGGVATCSANLIVL 97
D G+Y C A N GV SA L V+
Sbjct: 351 TIVNLSDAGMYQCVAENKHGVIFSSAELSVI 381
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 21/163 (12%)
Query: 28 CKVEGHPLPTMTWQK-DGTEL--HATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI 84
C G+P+PT+ W++ DG + A H +S LEI N +ED G Y C A N
Sbjct: 226 CFALGNPVPTILWRRADGKPIARKARRH------KSNGILEIPNFQQEDAGSYECVAENS 279
Query: 85 GGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE 144
G L + P + + + + + + GRP P+ W + +
Sbjct: 280 RGKNVAKGQLTFYAQ------PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGD 333
Query: 145 EILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFG 187
+L + +E + L+I+ D +Y A N G
Sbjct: 334 PLLTRDRIQIE------QGTLNITIVNLSDAGMYQCVAENKHG 370
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/303 (20%), Positives = 104/303 (34%), Gaps = 37/303 (12%)
Query: 211 APTIVRPLQALLVPKDS---TVTLEAEYTGTPTPEVKWFKNGKEI-VSKDIETKDNVTKL 266
P V+ ++ P DS V L E G P P ++W NG ++ + D L
Sbjct: 4 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 63
Query: 267 VIKQTTK-KTTGKYEIRVVNEAGEARTSGSVTITVAEAE---TVMMDVRVESHPTASFQW 322
+I K + G Y+ N G TI EA+ + + + + T S +
Sbjct: 64 LINNPNKTQDAGTYQCIATNSFG--------TIVSREAKLQFAYLENFKTRTRSTVSVR- 114
Query: 323 FIHSEPVVVTGKPTPL-----VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAG 377
+ +V+ P P W + P + + Q+T L I++V + G
Sbjct: 115 --RGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG---NLYIAKVEKSDVG 169
Query: 378 LYSCTAVNPXXXXXXXXXXXXXXXXXSGEAPKFTKPL-----KPVIAEAQSPATLKATVT 432
Y+C N G ++ + + V AE + L+
Sbjct: 170 NYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFAL 229
Query: 433 GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM 492
G P P+I W R + + + N +L I +D Y A ++ K +
Sbjct: 230 GNPVPTILWRRADGKPIARKARRHKSN-----GILEIPNFQQEDAGSYECVAENSRGKNV 284
Query: 493 TDG 495
G
Sbjct: 285 AKG 287
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 152/390 (38%), Gaps = 36/390 (9%)
Query: 6 APRFIEKIQPV---VSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
P F+++ V + +E+ +C+V+G+P P + W+ +GT++ + + V+
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG-- 62
Query: 63 TLEIINPTK-EDIGVYTCKATN-IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ 120
+L I NP K +D G Y C ATN G + + A L E + T ++ Q
Sbjct: 63 SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVR----RGQ 118
Query: 121 SPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 180
L S W + DN + + TG L I++ D Y+
Sbjct: 119 GMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFV--SQETGN--LYIAKVEKSDVGNYTC 174
Query: 181 KAVNTFGRAECRAN---LVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG 237
NT + L+LR + + E V+ + + K +TV LE G
Sbjct: 175 VVTNTVTNHKVLGPPTPLILRNDGVMGE---YEPKIEVQFPETVPAEKGTTVKLECFALG 231
Query: 238 TPTPEVKWFK-NGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSV 296
P P + W + +GK I K K N L I ++ G YE N G+ G +
Sbjct: 232 NPVPTILWRRADGKPIARKARRHKSNGI-LEIPNFQQEDAGSYECVAENSRGKNVAKGQL 290
Query: 297 TITVA-EAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVT 355
T ++ D+ V + ++ G+P P W +G P+ +
Sbjct: 291 TFYAQPNWVQIINDIHVAMEESVFWE-------CKANGRPKPTYRWLKNGDPLLTRDRIQ 343
Query: 356 IYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
I Q T L I+ V +AG+Y C A N
Sbjct: 344 IEQGT-----LNITIVNLSDAGMYQCVAEN 368
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 92/246 (37%), Gaps = 24/246 (9%)
Query: 59 ESVSTLEIINPTKEDIGVYTCKATNI---GGVATCSANLIVLEKEESGEA-PKFTKPL-K 113
+ L I K D+G YTC TN V LI+ GE PK +
Sbjct: 154 QETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPE 213
Query: 114 PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQ 173
V AE + L+ G P P+I W R + + + N +L I +
Sbjct: 214 TVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSN-----GILEIPNFQQE 268
Query: 174 DEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEA 233
D Y A N+ G+ + L P V+ + + V + +V E
Sbjct: 269 DAGSYECVAENSRGKNVAKGQLTF-----------YAQPNWVQIINDIHVAMEESVFWEC 317
Query: 234 EYTGTPTPEVKWFKNGKEIVSKD-IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART 292
+ G P P +W KNG ++++D I+ + + I + G Y+ N+ G +
Sbjct: 318 KANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSD--AGMYQCVAENKHGVIFS 375
Query: 293 SGSVTI 298
S +++
Sbjct: 376 SAELSV 381
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
P +++ I + E+ + CK G P PT W K+G L + I TL I
Sbjct: 296 PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQ----GTLNI 351
Query: 67 INPTKEDIGVYTCKATNIGGVATCSANLIVL 97
D G+Y C A N GV SA L V+
Sbjct: 352 TIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 21/163 (12%)
Query: 28 CKVEGHPLPTMTWQK-DGTEL--HATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI 84
C G+P+PT+ W++ DG + A H +S LEI N +ED G Y C A N
Sbjct: 227 CFALGNPVPTILWRRADGKPIARKARRH------KSNGILEIPNFQQEDAGSYECVAENS 280
Query: 85 GGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE 144
G L + P + + + + + + GRP P+ W + +
Sbjct: 281 RGKNVAKGQLTFYAQ------PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGD 334
Query: 145 EILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFG 187
+L + +E + L+I+ D +Y A N G
Sbjct: 335 PLLTRDRIQIE------QGTLNITIVNLSDAGMYQCVAENKHG 371
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/303 (20%), Positives = 104/303 (34%), Gaps = 37/303 (12%)
Query: 211 APTIVRPLQALLVPKDS---TVTLEAEYTGTPTPEVKWFKNGKEI-VSKDIETKDNVTKL 266
P V+ ++ P DS V L E G P P ++W NG ++ + D L
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 64
Query: 267 VIKQTTK-KTTGKYEIRVVNEAGEARTSGSVTITVAEAE---TVMMDVRVESHPTASFQW 322
+I K + G Y+ N G TI EA+ + + + + T S +
Sbjct: 65 LINNPNKTQDAGTYQCIATNSFG--------TIVSREAKLQFAYLENFKTRTRSTVSVR- 115
Query: 323 FIHSEPVVVTGKPTPL-----VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAG 377
+ +V+ P P W + P + + Q+T L I++V + G
Sbjct: 116 --RGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG---NLYIAKVEKSDVG 170
Query: 378 LYSCTAVNPXXXXXXXXXXXXXXXXXSGEAPKFTKPL-----KPVIAEAQSPATLKATVT 432
Y+C N G ++ + + V AE + L+
Sbjct: 171 NYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFAL 230
Query: 433 GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM 492
G P P+I W R + + + N +L I +D Y A ++ K +
Sbjct: 231 GNPVPTILWRRADGKPIARKARRHKSN-----GILEIPNFQQEDAGSYECVAENSRGKNV 285
Query: 493 TDG 495
G
Sbjct: 286 AKG 288
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 88/202 (43%), Gaps = 18/202 (8%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
PRFI++ + + A F C+ G P P +TW K G ++++ I ES +
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 67 INP--TKEDIGVYTCKATNIGGVATCSANLIVLEKEE--SGEAPKFTKPLKPVIAEAQSP 122
I P T D VY C A N G T A L VL +++ SG P + + E
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSG-FPNIDMGPQLKVVERTRT 125
Query: 123 ATLKATVTGRPTPSICWYRGKEEILP-----DNGHTMEFNPTTGECVLSISEATPQDEAV 177
AT+ +G P P I W++ + LP NG + +G + SE T D+
Sbjct: 126 ATMLCAASGNPDPEITWFK---DFLPVDPSASNGRIKQLR--SGALQIESSEET--DQGK 178
Query: 178 YSVKAVNTFG-RAECRANLVLR 198
Y A N+ G R ANL +R
Sbjct: 179 YECVATNSAGVRYSSPANLYVR 200
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 80/191 (41%), Gaps = 13/191 (6%)
Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
E P+F K K I + A+ TG P P + W + +++ T+EF+ + G
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLV 223
+ TP+DE VY A N+ G A L + + + P P I Q +V
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQL--PSGF--PNIDMGPQLKVV 120
Query: 224 PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK------LVIKQTTKKTTG 277
+ T T+ +G P PE+ WF K+ + D + K L I+ + + G
Sbjct: 121 ERTRTATMLCAASGNPDPEITWF---KDFLPVDPSASNGRIKQLRSGALQIESSEETDQG 177
Query: 278 KYEIRVVNEAG 288
KYE N AG
Sbjct: 178 KYECVATNSAG 188
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%)
Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
E P+F K K I + A+ TG P P + W + +++ T+EF+ + G
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL 500
+ TP+DE VY A ++ +I +VL
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVL 99
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 60/164 (36%), Gaps = 16/164 (9%)
Query: 332 TGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVF-PENAGLYSCTAVNPXXXX 390
TG P P VTW+ G + + TI D L I + P + +Y C A N
Sbjct: 31 TGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEI 90
Query: 391 XXXXXXXXXXXXX--SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEI 448
SG P + + E AT+ +G P P I W++ +
Sbjct: 91 TVHAKLTVLREDQLPSG-FPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK---DF 146
Query: 449 LP-----DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASST 487
LP NG + +G + SE T D+ Y A+++
Sbjct: 147 LPVDPSASNGRIKQLR--SGALQIESSEET--DQGKYECVATNS 186
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 88/202 (43%), Gaps = 18/202 (8%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
PRFI++ + + A F C+ G P P +TW K G ++++ I ES +
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 67 INP--TKEDIGVYTCKATNIGGVATCSANLIVLEKEE--SGEAPKFTKPLKPVIAEAQSP 122
I P T D VY C A N G T A L VL +++ SG P + + E
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSG-FPNIDMGPQLKVVERTRT 125
Query: 123 ATLKATVTGRPTPSICWYRGKEEILP-----DNGHTMEFNPTTGECVLSISEATPQDEAV 177
AT+ +G P P I W++ + LP NG + +G + SE T D+
Sbjct: 126 ATMLCAASGNPDPEITWFK---DFLPVDPSASNGRIKQLR--SGALQIESSEET--DQGK 178
Query: 178 YSVKAVNTFG-RAECRANLVLR 198
Y A N+ G R ANL +R
Sbjct: 179 YECVATNSAGVRYSSPANLYVR 200
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 80/191 (41%), Gaps = 13/191 (6%)
Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
E P+F K K I + A+ TG P P + W + +++ T+EF+ + G
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLV 223
+ TP+DE VY A N+ G A L + + + P P I Q +V
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQL--PSGF--PNIDMGPQLKVV 120
Query: 224 PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK------LVIKQTTKKTTG 277
+ T T+ +G P PE+ WF K+ + D + K L I+ + + G
Sbjct: 121 ERTRTATMLCAASGNPDPEITWF---KDFLPVDPSASNGRIKQLRSGALQIESSEETDQG 177
Query: 278 KYEIRVVNEAG 288
KYE N AG
Sbjct: 178 KYECVATNSAG 188
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%)
Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
E P+F K K I + A+ TG P P + W + +++ T+EF+ + G
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL 500
+ TP+DE VY A ++ +I +VL
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVL 99
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 60/164 (36%), Gaps = 16/164 (9%)
Query: 332 TGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVF-PENAGLYSCTAVNPXXXX 390
TG P P VTW+ G + + TI D L I + P + +Y C A N
Sbjct: 31 TGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEI 90
Query: 391 XXXXXXXXXXXXX--SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEI 448
SG P + + E AT+ +G P P I W++ +
Sbjct: 91 TVHAKLTVLREDQLPSG-FPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK---DF 146
Query: 449 LP-----DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASST 487
LP NG + +G + SE T D+ Y A+++
Sbjct: 147 LPVDPSASNGRIKQLR--SGALQIESSEET--DQGKYECVATNS 186
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 11/195 (5%)
Query: 101 ESGEAP-KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 159
E+GE P +FT+ + A+ TG P P I W + +++ +EF+
Sbjct: 1 ETGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDG 60
Query: 160 TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ 219
+G + TP+DEA+Y A N G L + + I PR PTI Q
Sbjct: 61 SGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQI--PRGF--PTIDMGPQ 116
Query: 220 ALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETK------DNVTKLVIKQTTK 273
+V + T T+ +G P PE+ WFK+ + + + + +++ L I+Q+ +
Sbjct: 117 LKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEE 176
Query: 274 KTTGKYEIRVVNEAG 288
GKYE N AG
Sbjct: 177 SDQGKYECVATNSAG 191
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 13/184 (7%)
Query: 24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINP--TKEDIGVYTCKA 81
A F C+ G P P + W K G ++ +I + ++ I P T D +Y C A
Sbjct: 24 ASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA 83
Query: 82 TNIGGVATCSANLIVLEKEESGEA-PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWY 140
+N G + S L VL +++ P + + E AT+ +G P P I W+
Sbjct: 84 SNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWF 143
Query: 141 RGKEEILP-----DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFG-RAECRAN 194
+ + LP +NG + + L I ++ D+ Y A N+ G R AN
Sbjct: 144 K---DFLPVDTSNNNGRIKQLR-SESIGALQIEQSEESDQGKYECVATNSAGTRYSAPAN 199
Query: 195 LVLR 198
L +R
Sbjct: 200 LYVR 203
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%)
Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467
P+FT+ + A+ TG P P I W + +++ +EF+ +G +
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLR 66
Query: 468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITR 507
TP+DEA+Y AS+ +I +VL +I R
Sbjct: 67 IQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPR 106
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 17 VSHQEQPALFTCKVEGHPLPTMTWQKDGTELH-ATEHYLITTV--ESVSTLEIINPTKED 73
V + + A C G+P P +TW KD + + + I + ES+ L+I + D
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESD 178
Query: 74 IGVYTCKATNIGGVA-TCSANLIV 96
G Y C ATN G + ANL V
Sbjct: 179 QGKYECVATNSAGTRYSAPANLYV 202
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 68/169 (40%), Gaps = 26/169 (15%)
Query: 234 EYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQ--TTKKTTGKYEIRVVNEAG 288
+ TG P P++ W K GK++ ++ IE D ++ Q T + YE N G
Sbjct: 29 QATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVG 88
Query: 289 EARTSGSVTITVAEA-----ETVMMDVR---VESHPTASFQWFIHSEPVVVTGKPTPLVT 340
E S +T+ + T+ M + VE TA+ +G P P +T
Sbjct: 89 EISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATML-------CAASGNPDPEIT 141
Query: 341 WSHDGTPM----KEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
W D P+ G+ + ++ G ++ SE + G Y C A N
Sbjct: 142 WFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSE--ESDQGKYECVATN 188
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 81/187 (43%), Gaps = 22/187 (11%)
Query: 24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTK--EDIGVYTCKA 81
A F C+ G P P +TW K G ++ + +I + ++ I P + D +Y C A
Sbjct: 24 ASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTA 83
Query: 82 TNIGGVATCSANLIVLEKEESGEAPKF----TKPLKPVIAEAQSPATLKATVTGRPTPSI 137
TN G SA L VLE+E+ P F P V+ +A++ AT+ G P P I
Sbjct: 84 TNSLGEINTSAKLSVLEEEQL--PPGFPSIDMGPQLKVVEKART-ATMLCAAGGNPDPEI 140
Query: 138 CWYRGKEEILP-----DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFG-RAEC 191
W++ + LP NG + L I + D+ Y A N+ G R
Sbjct: 141 SWFK---DFLPVDPATSNGRIKQLR----SGALQIESSEESDQGKYECVATNSAGTRYSA 193
Query: 192 RANLVLR 198
ANL +R
Sbjct: 194 PANLYVR 200
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 70/172 (40%), Gaps = 13/172 (7%)
Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182
A+ TG P P I W + +++ +EF+ G + +DEA+Y A
Sbjct: 24 ASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTA 83
Query: 183 VNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPE 242
N+ G A L + + + P P+I Q +V K T T+ G P PE
Sbjct: 84 TNSLGEINTSAKLSVLEEEQL--PPGF--PSIDMGPQLKVVEKARTATMLCAAGGNPDPE 139
Query: 243 VKWFKNGKEIVSKDIETKDNVTK------LVIKQTTKKTTGKYEIRVVNEAG 288
+ WFK+ + D T + K L I+ + + GKYE N AG
Sbjct: 140 ISWFKD---FLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAG 188
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 17 VSHQEQPALFTCKVEGHPLPTMTWQKDGTELH-ATEHYLITTVESVSTLEIINPTKEDIG 75
V + + A C G+P P ++W KD + AT + I + S L+I + + D G
Sbjct: 119 VVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRS-GALQIESSEESDQG 177
Query: 76 VYTCKATNIGGVA-TCSANLIVLEKEESG 103
Y C ATN G + ANL V + +G
Sbjct: 178 KYECVATNSAGTRYSAPANLYVRVRRVAG 206
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 484
A+ TG P P I W + +++ +EF+ G + +DEA+Y A
Sbjct: 24 ASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTA 83
Query: 485 SSTETKIMTDGNRSVL 500
+++ +I T SVL
Sbjct: 84 TNSLGEINTSAKLSVL 99
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 80/185 (43%), Gaps = 18/185 (9%)
Query: 24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTK--EDIGVYTCKA 81
A F C+ G P P +TW K G ++ + +I + ++ I P + D +Y C A
Sbjct: 25 ASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTA 84
Query: 82 TNIGGVATCSANLIVLEKEE--SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICW 139
TN G SA L VLE+++ SG P V+ + ++ AT+ G P P I W
Sbjct: 85 TNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRT-ATMLCAAGGNPDPEISW 143
Query: 140 YRGKEEILP-----DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFG-RAECRA 193
++ + LP NG + L I + D+ Y A N+ G R A
Sbjct: 144 FK---DFLPVDPAASNGRIKQLR----SGALQIESSEESDQGKYECVATNSAGTRYSAPA 196
Query: 194 NLVLR 198
NL +R
Sbjct: 197 NLYVR 201
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 71/173 (41%), Gaps = 15/173 (8%)
Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQ-DEAVYSVK 181
A+ TG P P I W + +++ +EF+ G VL I Q DEA+Y
Sbjct: 25 ASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGS-VLRIQPLRVQRDEAIYECT 83
Query: 182 AVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP 241
A N+ G A L + + + P PTI Q +V K T T+ G P P
Sbjct: 84 ATNSLGEINTSAKLSVLEEDQL--PSGF--PTIDMGPQLKVVEKGRTATMLCAAGGNPDP 139
Query: 242 EVKWFKNGKEIVSKDIETKDNVTK------LVIKQTTKKTTGKYEIRVVNEAG 288
E+ WFK+ + D + K L I+ + + GKYE N AG
Sbjct: 140 EISWFKD---FLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNSAG 189
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQ-DEAVYSVK 483
A+ TG P P I W + +++ +EF+ G VL I Q DEA+Y
Sbjct: 25 ASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGS-VLRIQPLRVQRDEAIYECT 83
Query: 484 ASSTETKIMTDGNRSVL 500
A+++ +I T SVL
Sbjct: 84 ATNSLGEINTSAKLSVL 100
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 57/165 (34%), Gaps = 16/165 (9%)
Query: 331 VTGKPTPLVTWSHDGTPMKEGK-EVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPXXX 389
TG+P P +TW G + + EV + D G + +Y CTA N
Sbjct: 31 ATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGE 90
Query: 390 XXXXXXXXXXXXXX--SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEE 447
SG P V+ + ++ AT+ G P P I W++ +
Sbjct: 91 INTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRT-ATMLCAAGGNPDPEISWFK---D 146
Query: 448 ILP-----DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASST 487
LP NG + L I + D+ Y A+++
Sbjct: 147 FLPVDPAASNGRIKQLR----SGALQIESSEESDQGKYECVATNS 187
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 85/204 (41%), Gaps = 16/204 (7%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
P FI+K + A F C+ G P P +TW K G ++++ I ES +
Sbjct: 7 PVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 67 INP--TKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEA-PKFTKPLKPVIAEAQSPA 123
I P T D +Y C A N G T A L VL +++ P + + E A
Sbjct: 67 IQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERTRTA 126
Query: 124 TLKATVTGRPTPSICWYRGKEEILP-----DNGHTMEFNPTTGECVLSISEATPQDEAVY 178
T+ +G P P I W++ + LP NG + +G + SE T D+ Y
Sbjct: 127 TMLCAASGNPDPEITWFK---DFLPVDPSTSNGRIKQLR--SGGLQIESSEET--DQGKY 179
Query: 179 SVKAVNTFG-RAECRANLVLRKAT 201
A N+ G R ANL +R T
Sbjct: 180 ECVASNSAGVRYSSPANLYVRVGT 203
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 84/197 (42%), Gaps = 18/197 (9%)
Query: 101 ESGEAPK-FTKPLKPV--IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFN 157
E+GE+P F K KPV I + A+ TG P P + W + +++ T+EF+
Sbjct: 1 ETGESPPVFIK--KPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFD 58
Query: 158 PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRP 217
+ G + TP+DE +Y A N G A L + + + P I
Sbjct: 59 ESAGAVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPP----GFPNIDMG 114
Query: 218 LQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK------LVIKQT 271
Q +V + T T+ +G P PE+ WF K+ + D T + K L I+ +
Sbjct: 115 PQLKVVERTRTATMLCAASGNPDPEITWF---KDFLPVDPSTSNGRIKQLRSGGLQIESS 171
Query: 272 TKKTTGKYEIRVVNEAG 288
+ GKYE N AG
Sbjct: 172 EETDQGKYECVASNSAG 188
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 59/163 (36%), Gaps = 14/163 (8%)
Query: 332 TGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVF-PENAGLYSCTAVNPXXXX 390
TG P P VTW+ G + + TI D L I + P + +Y C A NP
Sbjct: 31 TGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENIYECVAQNPHGEV 90
Query: 391 XXXXXXXXXXXXXSGEA-PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEIL 449
P + + E AT+ +G P P I W++ + L
Sbjct: 91 TVHAKLTVLREDQLPPGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK---DFL 147
Query: 450 P-----DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASST 487
P NG + +G + SE T D+ Y AS++
Sbjct: 148 PVDPSTSNGRIKQLR--SGGLQIESSEET--DQGKYECVASNS 186
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 404 SGEAPK-FTKPLKPV--IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP 460
+GE+P F K KPV I + A+ TG P P + W + +++ T+EF+
Sbjct: 2 TGESPPVFIK--KPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDE 59
Query: 461 TTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL 500
+ G + TP+DE +Y A + ++ +VL
Sbjct: 60 SAGAVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVL 99
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 103/394 (26%), Positives = 149/394 (37%), Gaps = 42/394 (10%)
Query: 12 KIQP--VVSHQEQPALFTCKVEGHPLPT-MTWQKDGTELHATEHYLITTVESVSTLEIIN 68
K QP V+ + P + C +EG+ +W+KDG + EH + +L +
Sbjct: 10 KDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDE-GSLVFLR 68
Query: 69 PTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKAT 128
P D G Y C A GVA S+ +I K +P T P+ P L
Sbjct: 69 PQASDEGHYQCFAETPAGVA--SSRVISFRKTYLIASPAKTHEKTPIEGR---PFQLDCV 123
Query: 129 V-TGRPTPSICWYRGKEEILPDNGHTMEFNP--TTG-ECVLSISEATPQD-EAVYSVKAV 183
+ P P I W + P N +F+ T G + L + T +D +Y K V
Sbjct: 124 LPNAYPKPLITWKKRLSGADP-NADVTDFDRRITAGPDGNLYFTIVTKEDVSDIY--KYV 180
Query: 184 NTFGRAECRANLVLR----KATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTP 239
T A +VL K T D P + ++ + Y P
Sbjct: 181 CTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNP 240
Query: 240 TPEVKWFKNGKEIVS--KDIETKDNVT---KLVIKQTTKKTTGKYEIRVVNEAGEARTSG 294
+FKNGK++ +D T+ N T +L+ K T + G Y V N G+ +
Sbjct: 241 MGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKH- 299
Query: 295 SVTITVAEAETVMMDVRVESHPTASF---QWFIHSEPVVVTGKPTPLVTWSHDGTPMKEG 351
S+ +TV A + E P Q + P VTG P P V WSH+ P+ G
Sbjct: 300 SLKLTVVSAP------KYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG 353
Query: 352 KEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
+ TD L I V + G Y C A N
Sbjct: 354 RATV----TD--SGLVIKGVKNGDKGYYGCRATN 381
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 15/103 (14%)
Query: 348 MKEGKEV--------TIYQDTDGLCKLAISEVFPENAGLYSCTAVNPXXXXXXXXXXXXX 399
K GK+V T + T G +L PE+ G+Y+C N
Sbjct: 247 FKNGKDVNGNPEDRITRHNRTSGK-RLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV 305
Query: 400 XXXXSGEAPKF-TKPLKPVIAEAQSPATLKATVTGRPTPSICW 441
APK+ KP K ++ + T+ VTG P P++ W
Sbjct: 306 VS-----APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVW 343
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 92/209 (44%), Gaps = 19/209 (9%)
Query: 2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE---HYLITTV 58
+ +PR IE +V + +PA CKVEG P PT+ W KDG + E H +
Sbjct: 5 GQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKD 64
Query: 59 ESVSTLEIINPTKE-DIGVYTCKATN-IGGVATCSANL-IVLEKEESGEAPKFTKPLKPV 115
++ + KE D G Y C A N +G + A+L I + +++ PK T+
Sbjct: 65 GALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTR----- 119
Query: 116 IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV-----LSISEA 170
+A+ ++ G P P++ W K+ + D+ M F ++ + L IS
Sbjct: 120 VAKGETALLECGPPKGIPEPTLIWI--KDGVPLDDLKAMSFGASSRVRIVDGGNLLISNV 177
Query: 171 TPQDEAVYSVKAVNTFG-RAECRANLVLR 198
P DE Y A N G R A L+++
Sbjct: 178 EPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 83/201 (41%), Gaps = 28/201 (13%)
Query: 200 ATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGK-----EIVS 254
A PR++E PT L+V K+ TL + G P P ++WFK+G+ E S
Sbjct: 4 AGQYQSPRIIEHPT------DLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKS 57
Query: 255 KDIETKDNVTKLVIKQTTKK--TTGKYEIRVVNEAGEARTS-GSVTITVAEAETVM--MD 309
++ KD KK G+Y N G+A + S+ I V + + D
Sbjct: 58 HRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKD 117
Query: 310 VRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDT-----DGLC 364
RV TA + P G P P + W DG P+ + K ++ + DG
Sbjct: 118 TRVAKGETA----LLECGP--PKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDG-G 170
Query: 365 KLAISEVFPENAGLYSCTAVN 385
L IS V P + G Y C A N
Sbjct: 171 NLLISNVEPIDEGNYKCIAQN 191
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 12/149 (8%)
Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPD--NGHTMEFNPTTG 161
++P+ + ++ + PATL V G+P P+I W++ E + + H ++F
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQAL 221
++ QD Y A N G+A R + L+ A D RV P R
Sbjct: 68 FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSR-HASLQIAVLRDDFRV--EPKDTR----- 119
Query: 222 LVPKDSTVTLE-AEYTGTPTPEVKWFKNG 249
V K T LE G P P + W K+G
Sbjct: 120 -VAKGETALLECGPPKGIPEPTLIWIKDG 147
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPD--NGHTMEF 458
++P+ + ++ + PATL V G+P P+I W++ E + + H ++F
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQF 62
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 92/209 (44%), Gaps = 19/209 (9%)
Query: 2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE---HYLITTV 58
+ +PR IE +V + +PA CKVEG P PT+ W KDG + E H +
Sbjct: 5 GQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKD 64
Query: 59 ESVSTLEIINPTKE-DIGVYTCKATN-IGGVATCSANL-IVLEKEESGEAPKFTKPLKPV 115
++ + KE D G Y C A N +G + A+L I + +++ PK T+
Sbjct: 65 GALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTR----- 119
Query: 116 IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV-----LSISEA 170
+A+ ++ G P P++ W K+ + D+ M F ++ + L IS
Sbjct: 120 VAKGETALLECGPPKGIPEPTLIWI--KDGVPLDDLKAMSFGASSRVRIVDGGNLLISNV 177
Query: 171 TPQDEAVYSVKAVNTFG-RAECRANLVLR 198
P DE Y A N G R A L+++
Sbjct: 178 EPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 83/201 (41%), Gaps = 28/201 (13%)
Query: 200 ATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGK-----EIVS 254
A PR++E PT L+V K+ TL + G P P ++WFK+G+ E S
Sbjct: 4 AGQYQSPRIIEHPT------DLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKS 57
Query: 255 KDIETKDNVTKLVIKQTTKK--TTGKYEIRVVNEAGEARTS-GSVTITVAEAETVM--MD 309
++ KD KK G+Y N G+A + S+ I V + + D
Sbjct: 58 HRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKD 117
Query: 310 VRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDT-----DGLC 364
RV TA + P G P P + W DG P+ + K ++ + DG
Sbjct: 118 TRVAKGETA----LLECGP--PKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDG-G 170
Query: 365 KLAISEVFPENAGLYSCTAVN 385
L IS V P + G Y C A N
Sbjct: 171 NLLISNVEPIDEGNYKCIAQN 191
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 12/149 (8%)
Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPD--NGHTMEFNPTTG 161
++P+ + ++ + PATL V G+P P+I W++ E + + H ++F
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQAL 221
++ QD Y A N G+A R + L+ A D RV P R
Sbjct: 68 FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSR-HASLQIAVLRDDFRV--EPKDTR----- 119
Query: 222 LVPKDSTVTLE-AEYTGTPTPEVKWFKNG 249
V K T LE G P P + W K+G
Sbjct: 120 -VAKGETALLECGPPKGIPEPTLIWIKDG 147
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPD--NGHTMEF 458
++P+ + ++ + PATL V G+P P+I W++ E + + H ++F
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQF 62
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 80/187 (42%), Gaps = 17/187 (9%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE-HYLITTVESVSTL 64
AP ++ V + E+ A F C VE +P P ++W ++ + + Y I E+ L
Sbjct: 7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIR--ENGQLL 64
Query: 65 EIINPTKEDIGVYTCKATN-IGG-VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
I++ D G+Y C A N +GG V +C A + ++ PK T+P V
Sbjct: 65 TILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMK-------PKITRPPINVKIIEGLK 117
Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182
A L T G P PS+ W +G + L +N + L I +D Y A
Sbjct: 118 AVLPCTTMGNPKPSVSWIKG-DSALRENSRIAVLESGS----LRIHNVQKEDAGQYRCVA 172
Query: 183 VNTFGRA 189
N+ G A
Sbjct: 173 KNSLGTA 179
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 71/190 (37%), Gaps = 19/190 (10%)
Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEI-LPDNGHTMEFNPTTGE 162
+AP T PL+ V A + AT V P P I W R K I L D +++ N G+
Sbjct: 6 KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIREN---GQ 62
Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRA--ECRANLVLRKATTIDKPRVLEAPTIVRPLQA 220
+L+I D+ +Y A N G A C A V KP++ P V+ ++
Sbjct: 63 -LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKM------KPKITRPPINVKIIEG 115
Query: 221 LLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYE 280
L L G P P V W K + L I K+ G+Y
Sbjct: 116 L------KAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYR 169
Query: 281 IRVVNEAGEA 290
N G A
Sbjct: 170 CVAKNSLGTA 179
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 66/182 (36%), Gaps = 19/182 (10%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETK----DNVTK 265
+AP I PL+ + + T P PE+ W +N +I+ K +T+ +N
Sbjct: 6 KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRN--KILIKLFDTRYSIRENGQL 63
Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHP--TASFQWF 323
L I G Y N G A S A V M ++ P +
Sbjct: 64 LTILSVEDSDDGIYCCTANNGVGGAVES-------CGALQVKMKPKITRPPINVKIIEGL 116
Query: 324 IHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTA 383
P G P P V+W + ++E + + + L I V E+AG Y C A
Sbjct: 117 KAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGS----LRIHNVQKEDAGQYRCVA 172
Query: 384 VN 385
N
Sbjct: 173 KN 174
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEI-LPDNGHTMEFNPTTGE 464
+AP T PL+ V A + AT V P P I W R K I L D +++ N G+
Sbjct: 6 KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIREN---GQ 62
Query: 465 CVLSISEATPQDEAVYSVKASS-TETKIMTDGNRSVLLISKITR 507
+L+I D+ +Y A++ + + G V + KITR
Sbjct: 63 -LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITR 105
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 7/114 (6%)
Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPXXXX 390
V P P ++W+ + +K T Y + L I V + G+Y CTA N
Sbjct: 31 VESYPQPEISWTRNKILIKLFD--TRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGA 88
Query: 391 XXXXXXXXXXXXXSGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRG 444
PK T+P V A L T G P PS+ W +G
Sbjct: 89 VESCGALQVKMK-----PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKG 137
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS-T 63
+ P F + I + + A F CKVEG+P P + W KD + + H+ I E + +
Sbjct: 40 VKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS 99
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
L I +D YTCKA N G ATC+A L+V
Sbjct: 100 LTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 165
P FTK + + S A V G P P + W++ + ++++ G C L
Sbjct: 42 PYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYD-EEGNCSL 100
Query: 166 SISEATPQDEAVYSVKAVNTFGRAECRANLVL 197
+ISE D+A Y+ KAVN+ G A C A L++
Sbjct: 101 TISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 30/55 (54%)
Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
V G P P V W D P+KE + I D +G C L ISEV ++ Y+C AVN
Sbjct: 65 VEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN 119
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467
P FTK + + S A V G P P + W++ + ++++ G C L
Sbjct: 42 PYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYD-EEGNCSL 100
Query: 468 SISEATPQDEAVYSVKA 484
+ISE D+A Y+ KA
Sbjct: 101 TISEVCGDDDAKYTCKA 117
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 8/100 (8%)
Query: 204 DKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSK-----DIE 258
+KP V P + + + V + S + + G P PEV WFK+ + D +
Sbjct: 36 EKPHV--KPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYD 93
Query: 259 TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
+ N + L I + KY + VN GEA + + +
Sbjct: 94 EEGNCS-LTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS-T 63
+ P F + I + + A F CKVEG+P P + W KD + + H+ I E + +
Sbjct: 40 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS 99
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
L I +D YTCKA N G ATC+A L+V
Sbjct: 100 LTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 165
P FTK + + S A V G P P + W++ + ++++ G C L
Sbjct: 42 PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYD-EEGNCSL 100
Query: 166 SISEATPQDEAVYSVKAVNTFGRAECRANLVL 197
+ISE D+A Y+ KAVN+ G A C A L++
Sbjct: 101 TISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 30/55 (54%)
Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
V G P P V W D P+KE + I D +G C L ISEV ++ Y+C AVN
Sbjct: 65 VEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN 119
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467
P FTK + + S A V G P P + W++ + ++++ G C L
Sbjct: 42 PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYD-EEGNCSL 100
Query: 468 SISEATPQDEAVYSVKA 484
+ISE D+A Y+ KA
Sbjct: 101 TISEVCGDDDAKYTCKA 117
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 8/100 (8%)
Query: 204 DKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSK-----DIE 258
+KP V P + + + V + S + + G P PEV WFK+ + D +
Sbjct: 36 EKPHV--KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYD 93
Query: 259 TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
+ N + L I + KY + VN GEA + + +
Sbjct: 94 EEGNCS-LTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 81/204 (39%), Gaps = 18/204 (8%)
Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPD----NGHTMEFNPTTG 161
P+ + +I PATL GRPTP+I WY+G E + D H M P+
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM-LLPSGS 68
Query: 162 ECVLSI--SEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ 219
L I + DE VY A N G A + L A D R + P+ V
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEA-VSHDASLEVAILRDDFR--QNPSDV---- 121
Query: 220 ALLVPKDSTVTLEAEY-TGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGK 278
+V +E + G P P + W K+G + KD KL+I T K GK
Sbjct: 122 --MVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGK 179
Query: 279 YEIRVVNEAGEARTSGSVTITVAE 302
Y N GE R S +TV E
Sbjct: 180 YVCVGTNMVGE-RESEVAELTVLE 202
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE-----HYLITT 57
E PR +E ++ + +PA CK EG P PT+ W K G + + H ++
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 58 VESVSTLEIINPTKE--DIGVYTCKATN-IGGVATCSANL-IVLEKEESGEAPK--FTKP 111
S+ L I++ K D GVY C A N +G + A+L + + +++ + P
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAV 125
Query: 112 LKPVIAEAQSPATLKATVTGRPTPSICW 139
+P + E Q P G P P+I W
Sbjct: 126 GEPAVMECQPP-------RGHPEPTISW 146
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 35/196 (17%)
Query: 206 PRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDN--- 262
PR++E P+ L+V K TL + G PTP ++W+K G+ + + + + +
Sbjct: 10 PRIVEHPS------DLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63
Query: 263 -------VTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESH 315
++V + ++ G Y N GEA S ++ VA +R +
Sbjct: 64 LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEA-VSHDASLEVAI-------LRDDFR 115
Query: 316 PTASFQWFIHSEPVVV-----TGKPTPLVTWSHDGTPMKEGKE-VTIYQDTDGLCKLAIS 369
S EP V+ G P P ++W DG+P+ + E +TI KL I+
Sbjct: 116 QNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG-----KLMIT 170
Query: 370 EVFPENAGLYSCTAVN 385
+AG Y C N
Sbjct: 171 YTRKSDAGKYVCVGTN 186
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPD----NGHTMEFNPTTG 463
P+ + +I PATL GRPTP+I WY+G E + D H M P+
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM-LLPSGS 68
Query: 464 ECVLSI--SEATPQDEAVY 480
L I + DE VY
Sbjct: 69 LFFLRIVHGRKSRPDEGVY 87
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELH-ATEHYLIT-TVESVST 63
AP F K++ + P FTC+V G+P P + W KDG ++ ++HY I ++ +
Sbjct: 7 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 66
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEA 105
L T +D G YT A N G +C+ L+V + G +
Sbjct: 67 LHTTASTLDDDGNYTIMAANPQGRVSCTGRLMVQAVNQRGRS 108
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 41/94 (43%)
Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 164
AP F LK P T V G P P I W++ ++I P + H G C
Sbjct: 7 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 66
Query: 165 LSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198
L + +T D+ Y++ A N GR C L+++
Sbjct: 67 LHTTASTLDDDGNYTIMAANPQGRVSCTGRLMVQ 100
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 44/101 (43%)
Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466
AP F LK P T V G P P I W++ ++I P + H G C
Sbjct: 7 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 66
Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITR 507
L + +T D+ Y++ A++ + ++ G V +++ R
Sbjct: 67 LHTTASTLDDDGNYTIMAANPQGRVSCTGRLMVQAVNQRGR 107
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 5/93 (5%)
Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETK-----DNVTK 265
AP L+ + + VT G P P++ WFK+GK+I K D
Sbjct: 7 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 66
Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
L +T G Y I N G +G + +
Sbjct: 67 LHTTASTLDDDGNYTIMAANPQGRVSCTGRLMV 99
Score = 36.6 bits (83), Expect = 0.037, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 331 VTGKPTPLVTWSHDGTPMK-EGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNP 386
V G P P + W DG + + TI +D DG C L + ++ G Y+ A NP
Sbjct: 31 VAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANP 87
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 62/171 (36%), Gaps = 22/171 (12%)
Query: 26 FTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG 85
F+C+ G P P ++W ++G + E Y++ S + L + N D G Y C+ATN
Sbjct: 24 FSCRASGSPEPAISWFRNGKLIEENEKYILKG--SNTELTVRNIINSDGGPYVCRATNKA 81
Query: 86 GVATCSANLIVLEKEESGEAPKFTKP----LKPVIAEAQSPATLKATVTGRPTPSICWYR 141
G A L V F +P LK TL G P P I W R
Sbjct: 82 GEDEKQAFLQV-----------FVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKR 130
Query: 142 GKEEILPDNGHT-----MEFNPTTGECVLSISEATPQDEAVYSVKAVNTFG 187
+ G +E G L I + D Y +A + G
Sbjct: 131 AVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG 181
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 18/184 (9%)
Query: 212 PTIVRPLQAL--LVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIET-KDNVTKLVI 268
P I P ++ + +T +G+P P + WF+NGK I + K + T+L +
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV 62
Query: 269 KQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVE-SHPTASFQWFIHSE 327
+ G Y R N+AGE + + V + ++ ++ E ++ +E
Sbjct: 63 RNIINSDGGPYVCRATNKAGEDEKQAFLQVFV---QPHIIQLKNETTYENGQVTLVCDAE 119
Query: 328 PVVVTGKPTPLVTWSH--DGTPMKEGKEVTI----YQDTDGLCKLAISEVFPENAGLYSC 381
G+P P +TW DG EG + + G L I +V ++G Y C
Sbjct: 120 -----GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDC 174
Query: 382 TAVN 385
A +
Sbjct: 175 EAAS 178
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 28/205 (13%)
Query: 106 PKFTKPLKPVIAEAQS--PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
P + P K A A+ T +G P P+I W+R + I + + ++ + T
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE--- 59
Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLV 223
L++ D Y +A N G E +A L +V P I++ L+
Sbjct: 60 -LTVRNIINSDGGPYVCRATNKAGEDEKQAFL-----------QVFVQPHIIQ-LKNETT 106
Query: 224 PKDSTVTLEAEYTGTPTPEVKW--------FKNGKEIVSKDIETK--DNVTKLVIKQTTK 273
++ VTL + G P PE+ W F G + + IE K + L IK
Sbjct: 107 YENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKL 166
Query: 274 KTTGKYEIRVVNEAGEARTSGSVTI 298
+G+Y+ + G + S + I
Sbjct: 167 SDSGRYDCEAASRIGGHQKSMYLDI 191
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK--DGTELHATEHYLITTVE- 59
+V I +++ +++ C EG P+P +TW++ DG + L +E
Sbjct: 91 QVFVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEV 150
Query: 60 ----SVSTLEIINPTKEDIGVYTCK-ATNIGG 86
S+L I + D G Y C+ A+ IGG
Sbjct: 151 KGQHGSSSLHIKDVKLSDSGRYDCEAASRIGG 182
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 42/128 (32%), Gaps = 39/128 (30%)
Query: 408 PKFTKPLKPVIAEAQS--PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
P + P K A A+ T +G P P+I W+R NG +E N
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR--------NGKLIEENEK---- 50
Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
Y +K S+TE L + I G CRA N AG
Sbjct: 51 --------------YILKGSNTE-----------LTVRNIINSDGGPYVCRATNKAGEDE 85
Query: 526 CTATLSLL 533
A L +
Sbjct: 86 KQAFLQVF 93
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA-TEHYLITTVESVSTLE 65
P F++ + + + CKV G P P ++WQ DG + + H ++ V +L
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKE 100
I T D G+YTC ATN G + S L+V KE
Sbjct: 70 IEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKE 104
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
V+G PTP ++W DG P++ + +G+ L I V +AG+Y+C A N
Sbjct: 33 VSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATN 87
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 205 KPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEI----VSKDIETK 260
+P L+AP L V + ++ + +G PTP++ W +GK + K + +
Sbjct: 9 RPHFLQAPG------DLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRE 62
Query: 261 DNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAET 305
+ V L+I+ T + G Y N AG+ S S+ + VA E+
Sbjct: 63 NGVHSLIIEPVTSRDAGIYTCIATNRAGQ--NSFSLELVVAAKES 105
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
SG P F + + + + V+G PTP + W + + PD+ H M G
Sbjct: 6 SGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVR-ENG 64
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVL 197
L I T +D +Y+ A N G+ LV+
Sbjct: 65 VHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVV 100
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 404 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
SG P F + + + + V+G PTP + W + + PD+ H M G
Sbjct: 6 SGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVR-ENG 64
Query: 464 ECVLSISEATPQDEAVYSVKASS 486
L I T +D +Y+ A++
Sbjct: 65 VHSLIIEPVTSRDAGIYTCIATN 87
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 76/198 (38%), Gaps = 19/198 (9%)
Query: 108 FTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEI--LPDNGHTMEFNPTTGECVL 165
F + + P + A + V+ P P++ W EE+ + DN M L
Sbjct: 5 FREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM-----LANNNL 59
Query: 166 SISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQAL--LV 223
I DE +Y + GR E R + R I V P I P ++
Sbjct: 60 QILNINKSDEGIYRCE-----GRVEARGEIDFRDIIVI----VNVPPAISMPQKSFNATA 110
Query: 224 PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIET-KDNVTKLVIKQTTKKTTGKYEIR 282
+ +T +G+P P + WF+NGK I + K + T+L ++ G Y R
Sbjct: 111 ERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCR 170
Query: 283 VVNEAGEARTSGSVTITV 300
N+AGE + + V
Sbjct: 171 ATNKAGEDEKQAFLQVFV 188
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 26 FTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG 85
F+C+ G P P ++W ++G + E Y++ S + L + N D G Y C+ATN
Sbjct: 118 FSCRASGSPEPAISWFRNGKLIEENEKYILKG--SNTELTVRNIINSDGGPYVCRATNKA 175
Query: 86 GVATCSANLIVL 97
G A L V
Sbjct: 176 GEDEKQAFLQVF 187
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 75/189 (39%), Gaps = 11/189 (5%)
Query: 9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIIN 68
F E + P Q + A C+V P P ++W E+ + + + L+I+N
Sbjct: 5 FREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAML-ANNNLQILN 63
Query: 69 PTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQS--PATLK 126
K D G+Y C+ ++IV+ P + P K A A+ T
Sbjct: 64 INKSDEGIYRCEGRVEARGEIDFRDIIVI----VNVPPAISMPQKSFNATAERGEEMTFS 119
Query: 127 ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF 186
+G P P+I W+R + I + + ++ + T L++ D Y +A N
Sbjct: 120 CRASGSPEPAISWFRNGKLIEENEKYILKGSNTE----LTVRNIINSDGGPYVCRATNKA 175
Query: 187 GRAECRANL 195
G E +A L
Sbjct: 176 GEDEKQAFL 184
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 42/128 (32%), Gaps = 39/128 (30%)
Query: 408 PKFTKPLKPVIAEAQS--PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
P + P K A A+ T +G P P+I W+R NG +E N
Sbjct: 97 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR--------NGKLIEENEK---- 144
Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
Y +K S+TE L + I G CRA N AG
Sbjct: 145 --------------YILKGSNTE-----------LTVRNIINSDGGPYVCRATNKAGEDE 179
Query: 526 CTATLSLL 533
A L +
Sbjct: 180 KQAFLQVF 187
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELH-ATEHYLIT-TVESVST 63
AP F K++ + P FTC+V G+P P + W KDG ++ ++HY I ++ +
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 67
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
L T +D G YT A N G +C+ L+V
Sbjct: 68 LHTTASTLDDDGNYTIMAANPQGRISCTGRLMV 100
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 43/101 (42%)
Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
S AP F LK P T V G P P I W++ ++I P + H G
Sbjct: 5 SSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG 64
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATT 202
C L + +T D+ Y++ A N GR C L+++ +
Sbjct: 65 TCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNS 105
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 40/92 (43%)
Query: 404 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
S AP F LK P T V G P P I W++ ++I P + H G
Sbjct: 5 SSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG 64
Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDG 495
C L + +T D+ Y++ A++ + +I G
Sbjct: 65 TCSLHTTASTLDDDGNYTIMAANPQGRISCTG 96
Score = 36.2 bits (82), Expect = 0.045, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 331 VTGKPTPLVTWSHDGTPMK-EGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNP 386
V G P P + W DG + + TI +D DG C L + ++ G Y+ A NP
Sbjct: 32 VAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANP 88
Score = 36.2 bits (82), Expect = 0.057, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 5/93 (5%)
Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETK-----DNVTK 265
AP L+ + + VT G P P++ WFK+GK+I K D
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 67
Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
L +T G Y I N G +G + +
Sbjct: 68 LHTTASTLDDDGNYTIMAANPQGRISCTGRLMV 100
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 209 LEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVT 264
+EAP I +Q+ V + S G P PE +W+KNG +I D +DNV
Sbjct: 3 MEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVC 62
Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGE 289
+LVI+ T + + ++ +N AGE
Sbjct: 63 ELVIRDVTGEDSASIMVKAINIAGE 87
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEH-YLITTVESVSTL 64
AP+ E+IQ Q A F +V G P P W K+G ++ ++ Y ++V L
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 64
Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
I + T ED KA NI G + A L+V K
Sbjct: 65 VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
S EAPK + ++ S A + V G+P P WY+ +I + + P
Sbjct: 2 SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKI-ERSDRIYWYWPEDN 60
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198
C L I + T +D A VKA+N G A L+++
Sbjct: 61 VCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQ 97
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 329 VVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
V V GKP P W +G ++ + Y D +C+L I +V E++ A+N
Sbjct: 27 VRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN 83
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 404 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
S EAPK + ++ S A + V G+P P WY+ +I + + P
Sbjct: 2 SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKI-ERSDRIYWYWPEDN 60
Query: 464 ECVLSISEATPQDEAVYSVKA 484
C L I + T +D A VKA
Sbjct: 61 VCELVIRDVTGEDSASIMVKA 81
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 72/201 (35%), Gaps = 34/201 (16%)
Query: 211 APTIVRP----LQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDN 262
AP RP + L VP +TV G PTP + W KNG+E + I+ +
Sbjct: 11 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 70
Query: 263 VTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI------------------TVAEAE 304
LV++ G Y V N+ G R + ++ + T
Sbjct: 71 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGS 130
Query: 305 TVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLC 364
V +V S QW H E V K P DGTP + I + +
Sbjct: 131 DVEFHCKVYSDAQPHIQWLKHVE--VNGSKVGP------DGTPYVTVLKSWISESVEADV 182
Query: 365 KLAISEVFPENAGLYSCTAVN 385
+L ++ V + G Y C A N
Sbjct: 183 RLRLANVSERDGGEYLCRATN 203
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 71/187 (37%), Gaps = 34/187 (18%)
Query: 26 FTCKVEGHPLPTMTWQKDGTELHATEHYL--ITTVESVSTLEIINPTKEDIGVYTCKATN 83
F C G+P P+++W K+G E EH + I +L + + D G YTC N
Sbjct: 35 FRCPAAGNPTPSISWLKNGREFRG-EHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVEN 93
Query: 84 IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKAT----------VTGRP 133
G + L VLE+ P +P++ +A PA A V
Sbjct: 94 KFGSIRQTYTLDVLER----------SPHRPIL-QAGLPANQTAVLGSDVEFHCKVYSDA 142
Query: 134 TPSICWYRGKE----EILPDNG-HTMEFNPTTGECV-----LSISEATPQDEAVYSVKAV 183
P I W + E ++ PD + E V L ++ + +D Y +A
Sbjct: 143 QPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRAT 202
Query: 184 NTFGRAE 190
N G AE
Sbjct: 203 NFIGVAE 209
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 91/242 (37%), Gaps = 59/242 (24%)
Query: 105 APKFTKP----LKPVIAEAQSPATLKATVTGRPTPSICW------YRGKEEILPDNGHTM 154
AP +T+P K + A + + G PTPSI W +RG+ I G +
Sbjct: 11 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRI---GGIKL 67
Query: 155 EFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTI 214
+ L + P D Y+ N FG +R+ T+D VLE +
Sbjct: 68 RHQ----QWSLVMESVVPSDRGNYTCVVENKFGS--------IRQTYTLD---VLER-SP 111
Query: 215 VRPLQALLVPKDSTVTLEAE------YTGTPTPEVKWFK----NGKEI------------ 252
RP+ +P + T L ++ P ++W K NG ++
Sbjct: 112 HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLK 171
Query: 253 --VSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI---TVAEAETVM 307
+S+ +E +L + +++ G+Y R N G A + +++ AE E V
Sbjct: 172 SWISESVEAD---VRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVE 228
Query: 308 MD 309
D
Sbjct: 229 AD 230
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
LA R + K + + ++ + A F+C +G P+PT+TW + G L + + +TT + ST
Sbjct: 13 LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTF 72
Query: 65 EIINPTKEDIGVYTCKATNIGG 86
EI + D G Y+ N G
Sbjct: 73 EISSVQASDEGNYSVVVENSEG 94
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 108 FTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSI 167
TKP + E +S A G P P++ W R K ++L + + T + I
Sbjct: 18 LTKPRSMTVYEGES-ARFSCDTDGEPVPTVTWLR-KGQVLSTSAR-HQVTTTKYKSTFEI 74
Query: 168 SEATPQDEAVYSVKAVNTFGRAECRANLVLRK 199
S DE YSV N+ G+ E L ++K
Sbjct: 75 SSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 106
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 13/182 (7%)
Query: 24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI--INPTK--EDIGVYTC 79
A F C G P P++ W+K+G ++ T+ T +E + I I P + D Y C
Sbjct: 26 ASFYCAARGDPPPSIVWRKNGKKVSGTQSRY-TVLEQPGGISILRIEPVRAGRDDAPYEC 84
Query: 80 KATN-IGGVATCSANLIVLEKEESGEA-PKFTKPLKPVIAEAQSPATLKATVTGRPTPSI 137
A N +G + A L + E +++ P T+ + E + G PTP+I
Sbjct: 85 VAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNI 144
Query: 138 CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRA-NLV 196
W + + ++ N + + L I + +D+ Y A N+ G +A NL
Sbjct: 145 YWIKNQTKVDMSNPRY-----SLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLY 199
Query: 197 LR 198
++
Sbjct: 200 VK 201
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 69/185 (37%), Gaps = 18/185 (9%)
Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVTKL 266
P I+R Q V + G P P + W KNGK++ +E ++ L
Sbjct: 9 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 68
Query: 267 VIKQT-TKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESH-PTASFQWFI 324
I+ + YE N G+A S T+T+ E + V + P
Sbjct: 69 RIEPVRAGRDDAPYECVAENGVGDA-VSADATLTIYEGDKTPAGFPVITQGPGTRVIEVG 127
Query: 325 HSEPVVVT----GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYS 380
H+ V++T G PTP + W + T K Y DG L I E+ G Y
Sbjct: 128 HT--VLMTCKAIGNPTPNIYWIKNQT--KVDMSNPRYSLKDGF--LQIENSREEDQGKYE 181
Query: 381 CTAVN 385
C A N
Sbjct: 182 CVAEN 186
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 13/182 (7%)
Query: 24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI--INPTK--EDIGVYTC 79
A F C G P P++ W+K+G ++ T+ T +E + I I P + D Y C
Sbjct: 24 ASFYCAARGDPPPSIVWRKNGKKVSGTQSRY-TVLEQPGGISILRIEPVRAGRDDAPYEC 82
Query: 80 KATN-IGGVATCSANLIVLEKEESGEA-PKFTKPLKPVIAEAQSPATLKATVTGRPTPSI 137
A N +G + A L + E +++ P T+ + E + G PTP+I
Sbjct: 83 VAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNI 142
Query: 138 CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRA-NLV 196
W + + ++ N + + L I + +D+ Y A N+ G +A NL
Sbjct: 143 YWIKNQTKVDMSNPRY-----SLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLY 197
Query: 197 LR 198
++
Sbjct: 198 VK 199
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 69/185 (37%), Gaps = 18/185 (9%)
Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVTKL 266
P I+R Q V + G P P + W KNGK++ +E ++ L
Sbjct: 7 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 66
Query: 267 VIKQT-TKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESH-PTASFQWFI 324
I+ + YE N G+A S T+T+ E + V + P
Sbjct: 67 RIEPVRAGRDDAPYECVAENGVGDA-VSADATLTIYEGDKTPAGFPVITQGPGTRVIEVG 125
Query: 325 HSEPVVVT----GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYS 380
H+ V++T G PTP + W + T + Y DG L I E+ G Y
Sbjct: 126 HT--VLMTCKAIGNPTPNIYWIKNQTKVDMSNPR--YSLKDGF--LQIENSREEDQGKYE 179
Query: 381 CTAVN 385
C A N
Sbjct: 180 CVAEN 184
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 74/202 (36%), Gaps = 35/202 (17%)
Query: 211 APTIVRP----LQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDN 262
AP RP + L VP +TV G PTP + W KNG+E + I+ +
Sbjct: 119 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 178
Query: 263 VTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI------------------TVAEAE 304
LV++ G Y V N+ G R + ++ + T
Sbjct: 179 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGS 238
Query: 305 TVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDG-L 363
V +V S QW H E V K P DGTP + TD L
Sbjct: 239 DVEFHCKVYSDAQPHIQWLKHVE--VNGSKVGP------DGTPYVTVLKTAGANTTDKEL 290
Query: 364 CKLAISEVFPENAGLYSCTAVN 385
L++ V E+AG Y+C A N
Sbjct: 291 EVLSLHNVTFEDAGEYTCLAGN 312
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 116/315 (36%), Gaps = 72/315 (22%)
Query: 40 WQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
W KDGT L +E L+ L+++N + ED G Y+C+ + C ++ V +
Sbjct: 43 WVKDGTGLVPSERVLVGP----QRLQVLNASHEDSGAYSCR-QRLTQRVLCHFSVRVTDA 97
Query: 100 EESGE----------------APKFTKP----LKPVIAEAQSPATLKATVTGRPTPSICW 139
SG+ AP +T+P K + A + + G PTPSI W
Sbjct: 98 PSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISW 157
Query: 140 ------YRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRA 193
+RG+ I G + + L + P D Y+ N FG
Sbjct: 158 LKNGREFRGEHRI---GGIKLRHQ----QWSLVMESVVPSDRGNYTCVVENKFGS----- 205
Query: 194 NLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAE------YTGTPTPEVKWFK 247
+R+ T+D VLE + RP+ +P + T L ++ P ++W K
Sbjct: 206 ---IRQTYTLD---VLER-SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLK 258
Query: 248 ----NGKEI------------VSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEAR 291
NG ++ + T + L + T + G+Y N G +
Sbjct: 259 HVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSH 318
Query: 292 TSGSVTITVAEAETV 306
S + + AE E V
Sbjct: 319 HSAWLVVLPAEEELV 333
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 77/195 (39%), Gaps = 35/195 (17%)
Query: 26 FTCKVEGHPLPTMTWQKDGTELHATEHYL--ITTVESVSTLEIINPTKEDIGVYTCKATN 83
F C G+P P+++W K+G E EH + I +L + + D G YTC N
Sbjct: 143 FRCPAAGNPTPSISWLKNGREFRG-EHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVEN 201
Query: 84 IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKAT----------VTGRP 133
G + L VLE+ P +P++ +A PA A V
Sbjct: 202 KFGSIRQTYTLDVLER----------SPHRPIL-QAGLPANQTAVLGSDVEFHCKVYSDA 250
Query: 134 TPSICWYRGKE----EILPDNG------HTMEFNPTTGEC-VLSISEATPQDEAVYSVKA 182
P I W + E ++ PD T N T E VLS+ T +D Y+ A
Sbjct: 251 QPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLA 310
Query: 183 VNTFGRAECRANLVL 197
N+ G + A LV+
Sbjct: 311 GNSIGFSHHSAWLVV 325
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 26 FTCKVEGHPLPTMTWQK----DGTEL--HATEHYLI-------TTVESVSTLEIINPTKE 72
F CKV P + W K +G+++ T + + TT + + L + N T E
Sbjct: 242 FHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFE 301
Query: 73 DIGVYTCKATNIGGVATCSANLIVLEKEE 101
D G YTC A N G + SA L+VL EE
Sbjct: 302 DAGEYTCLAGNSIGFSHHSAWLVVLPAEE 330
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 105/485 (21%), Positives = 181/485 (37%), Gaps = 91/485 (18%)
Query: 61 VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVI-AEA 119
+STL I T+ D G+YTC A++ G+ T + V E+ A F ++ ++ A
Sbjct: 289 LSTLTIDGVTRSDQGLYTCAASS--GLMTKKNSTFVRVHEKPFVA--FGSGMESLVEATV 344
Query: 120 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT-GECVLSISEATPQDEAVY 178
+ A G P P I WY+ NG +E N T VL+I E + +D Y
Sbjct: 345 GERVRIPAKYLGYPPPEIKWYK--------NGIPLESNHTIKAGHVLTIMEVSERDTGNY 396
Query: 179 SVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVT-------- 230
+V N + E ++++V + + P + +++ P+ + T+T
Sbjct: 397 TVILTNPISK-EKQSHVV---SLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPP 452
Query: 231 ---------LEAEYTGTPTPEV---------KW-----FKNGKEI-VSKD----IETKDN 262
LE E P+ V +W F+ G +I V+K+ IE K+
Sbjct: 453 PHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNK 512
Query: 263 -VTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA------------EAETVMMD 309
V+ LVI+ + Y+ VN+ G S +T E E+V +
Sbjct: 513 TVSTLVIQ--AANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLW 570
Query: 310 VRVESHPTASFQWFI---HSEPVVVTGKPTPLVT-----WSHDGTPMKEGKEVTIYQDTD 361
+ + W+ P+ V PTP+ W + T T+
Sbjct: 571 CTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFS--------NSTN 622
Query: 362 GLCKLAISEVFPENAGLYSCTAVNPXXXXXXXXXXXXXXXXXSGEAPKFTKPLKPVIAEA 421
+ + + ++ G Y C A + AP T L+
Sbjct: 623 DILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERV--APTITGNLENQTTSI 680
Query: 422 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYS 481
+ T +G P P I W++ E ++ D+G ++ G L+I +DE +Y+
Sbjct: 681 GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK----DGNRNLTIRRVRKEDEGLYT 736
Query: 482 VKASS 486
+A S
Sbjct: 737 CQACS 741
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 8/154 (5%)
Query: 153 TMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAP 212
TM N T ++ + A+ QD+ Y A + R + + V+R+ T +++ AP
Sbjct: 615 TMFSNSTNDILIMELKNASLQDQGDYVCLAQD---RKTKKRHCVVRQLTVLERV----AP 667
Query: 213 TIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIV-SKDIETKDNVTKLVIKQT 271
TI L+ ++ + +G P P++ WFK+ + +V I KD L I++
Sbjct: 668 TITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRV 727
Query: 272 TKKTTGKYEIRVVNEAGEARTSGSVTITVAEAET 305
K+ G Y + + G A+ I A+ +T
Sbjct: 728 RKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKT 761
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 31/211 (14%)
Query: 13 IQPVVSHQEQPAL-FTCKVEGHPLPTMTWQKDGTE---LHATE------------HYLIT 56
+QP + EQ ++ C + +TW K G + +H E L
Sbjct: 555 LQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNA 614
Query: 57 TVESVST-----LEIINPTKEDIGVYTCKATN--IGGVATCSANLIVLEKEESGEAPKFT 109
T+ S ST +E+ N + +D G Y C A + L VLE+ AP T
Sbjct: 615 TMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERV----APTIT 670
Query: 110 KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISE 169
L+ + T +G P P I W++ E ++ D+G ++ G L+I
Sbjct: 671 GNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK----DGNRNLTIRR 726
Query: 170 ATPQDEAVYSVKAVNTFGRAECRANLVLRKA 200
+DE +Y+ +A + G A+ A ++ A
Sbjct: 727 VRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 757
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 27 TCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGG 86
+C G+P P + W KD L E I + L I KED G+YTC+A ++ G
Sbjct: 687 SCTASGNPPPQIMWFKDNETL--VEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLG 744
Query: 87 VATCSANLIVLEKEE 101
A A I+ +E
Sbjct: 745 CAKVEAFFIIEGAQE 759
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 84/415 (20%), Positives = 143/415 (34%), Gaps = 88/415 (21%)
Query: 29 KVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA 88
K G+P P + W K+G L + T+++ L I+ ++ D G YT TN
Sbjct: 353 KYLGYPPPEIKWYKNGIPLESNH-----TIKAGHVLTIMEVSERDTGNYTVILTN----- 402
Query: 89 TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ--SPA---------TLKATVTGRPTP-S 136
+ KE+ + P I E SP TL TV P P
Sbjct: 403 -------PISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHH 455
Query: 137 ICWYRGKEEILPD------------------------NGHTMEFNPTTGECVLSISEATP 172
I WY EE + G+ +E N ++ E
Sbjct: 456 IHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQ----FALIEGKN 511
Query: 173 QDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDS-TVTL 231
+ + ++A N +C A + + + V P I LQ + P + +V+L
Sbjct: 512 KTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEIT--LQPDMQPTEQESVSL 569
Query: 232 EAEYTGTPTPEVKWFKNGKE-----------IVSKDIET------------KDNVTKLVI 268
+ + W+K G + V K+++T +++ + +
Sbjct: 570 WCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMEL 629
Query: 269 KQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEP 328
K + + G Y + + R +TV E + +E+ T+ + S
Sbjct: 630 KNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVS-- 687
Query: 329 VVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTA 383
+G P P + W D + E + + DG L I V E+ GLY+C A
Sbjct: 688 CTASGNPPPQIMWFKDNETLVEDSGIVL---KDGNRNLTIRRVRKEDEGLYTCQA 739
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 111/283 (39%), Gaps = 34/283 (12%)
Query: 25 LFTCKVEGHPLP-TMTWQKDGTELHATEHYLITTV---ESVSTLEIINPTKEDIGVYTCK 80
F C+V G ++W E + I+ V + STL I N +D G+Y C
Sbjct: 21 FFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCV 80
Query: 81 ATNIGGVAT-CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICW 139
T G + + N+ + +K AP P + A + V P+I W
Sbjct: 81 VTAEDGTQSEATVNVKIFQKLMFKNAPT------PQEFKEGEDAVIVCDVVSSLPPTIIW 134
Query: 140 -YRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198
++G++ IL + + + L I DE Y + GR R + +
Sbjct: 135 KHKGRDVILKKDVRFIVLSNN----YLQIRGIKKTDEGTYRCE-----GRILARGEINFK 185
Query: 199 KATTIDKPRVLEAPTIVRPLQALL---VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSK 255
I + P V+ Q+++ +VTL + G P P + W K+G+ I ++
Sbjct: 186 DIQVI-----VNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENE 240
Query: 256 DIETK-----DNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTS 293
+ + + D+ ++L I+ K +Y N+AGE S
Sbjct: 241 EEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDAS 283
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 22 QPALFTCKVEGHPLPTMTWQKDG----TELHATEHYLITTVESVSTLEIINPTKEDIGVY 77
Q C +G P PTM+W KDG E E ++ + + S L I N K D Y
Sbjct: 212 QSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFS--DDSSELTIRNVDKNDEAEY 269
Query: 78 TCKATNIGGVATCSANLIVLEK 99
C A N G S +L V K
Sbjct: 270 VCIAENKAGEQDASIHLKVFAK 291
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 333 GKPTPLVTWSHDGTPM---KEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
G P P ++W+ DG P+ +E E I+ +D +L I V + Y C A N
Sbjct: 222 GFPEPTMSWTKDGEPIENEEEDDEKHIF--SDDSSELTIRNVDKNDEAEYVCIAEN 275
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN 83
AL CK G PLP ++W K+G + T++ TL+I N D G YTC AT+
Sbjct: 26 ALLKCKATGDPLPVISWLKEGFTFPGRDPR--ATIQEQGTLQIKNLRISDTGTYTCVATS 83
Query: 84 IGGVATCSANLIVLEKEESG 103
G + SA VL+ ESG
Sbjct: 84 SSGETSWSA---VLDVTESG 100
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 206 PRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIE-TKDNVT 264
P +L+ P Q L V D T L+ + TG P P + W K G +D T
Sbjct: 9 PIILQGPAN----QTLAV--DGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG 62
Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA 303
L IK TG Y + +GE TS S + V E+
Sbjct: 63 TLQIKNLRISDTGTYTCVATSSSGE--TSWSAVLDVTES 99
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 22 QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81
+PA+FTC+ G+P+ T++W KDG + +E S L I + KED G+Y C
Sbjct: 326 RPAVFTCQYTGNPIKTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQCFV 375
Query: 82 TNIGGVATCSANL 94
N A SA L
Sbjct: 376 RNDRESAEASAEL 388
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 90/398 (22%), Positives = 141/398 (35%), Gaps = 86/398 (21%)
Query: 28 CKVEGHPLPTMTW-QKDGTELHATEHYLITTVESVSTLEIINPTKEDI------GVYTCK 80
CK G+P+P + W + DGT + + + S L ED VY C
Sbjct: 26 CKASGNPMPEIIWIRSDGTAVGDVPG--LRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 83
Query: 81 ATN-IGGVATCSANL--IVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-------- 129
A N G + + ++ +V++ ES ++ V+ + + P+ + V
Sbjct: 84 ARNQFGSIISRDVHVRAVVIQSYESEADNEYVIRGNSVVMKCEIPSYVADFVFVDLWLDS 143
Query: 130 TGRPT--PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFG 187
GR + GK +LP +GE L I E P+D +
Sbjct: 144 EGRNYYPNNAAETDGKYLVLP-----------SGE--LHIREVGPED----------GYK 180
Query: 188 RAECRANLVL----RKATTIDKPRVLEAPTIVRP-------LQALLVPKDSTVTLEAEYT 236
+CR L R + T + + E VRP Q + V S+ +L
Sbjct: 181 SYQCRTKHRLTGETRLSATKGRLVITEPVGSVRPKVNPQDKHQFIDVELASSYSLLCMAQ 240
Query: 237 GTPTPEVKWFK-----NGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEAR 291
PTP +W+K K+ V + K L+IK + +GKY V N G
Sbjct: 241 SYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGES 300
Query: 292 TSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVV----TGKPTPLVTWSHDGTP 347
+T+T + + PT + + P V TG P V+W DG
Sbjct: 301 VETVLTVTAPLSAKI-------DPPTQTVDF---GRPAVFTCQYTGNPIKTVSWMKDGKA 350
Query: 348 MKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
+ + V L I V E+ G+Y C N
Sbjct: 351 IGHSESV-----------LRIESVKKEDKGMYQCFVRN 377
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 62/187 (33%), Gaps = 30/187 (16%)
Query: 118 EAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAV 177
E S +L PTPS WY+ E + L I +A +D
Sbjct: 228 ELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGK 287
Query: 178 YSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTV------TL 231
Y N+ G L T+ PL A + P TV
Sbjct: 288 YLCVVNNSVGGESVETVL-----------------TVTAPLSAKIDPPTQTVDFGRPAVF 330
Query: 232 EAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEAR 291
+YTG P V W K+GK I + + L I+ K+ G Y+ V N+ A
Sbjct: 331 TCQYTGNPIKTVSWMKDGKAIGHSE-------SVLRIESVKKEDKGMYQCFVRNDRESAE 383
Query: 292 TSGSVTI 298
S + +
Sbjct: 384 ASAELKL 390
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 72/184 (39%), Gaps = 17/184 (9%)
Query: 22 QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81
+ FTC G P + G ++ +T+ ++ S L I N ED G+Y C+A
Sbjct: 18 ESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQA 77
Query: 82 TNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYR 141
T+ G T A +++ E + F + + P + A + V+ P P++ W
Sbjct: 78 TDAKG-QTQEATVVL----EIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLY 132
Query: 142 GKEEI--LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRK 199
EE+ + DN M L I DE +Y + GR E R + R
Sbjct: 133 HNEEVTTISDNRFAM-----LANNNLQILNINKSDEGIYRCE-----GRVEARGEIDFRD 182
Query: 200 ATTI 203
I
Sbjct: 183 IIVI 186
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 68/170 (40%), Gaps = 15/170 (8%)
Query: 26 FTCKVEGHPLPTMTWQK--DGTELHATEHYLITTVE-----SVSTLEIINPTKEDIGVYT 78
C EG P+P +TW++ DG + L +E S+L I + D G Y
Sbjct: 20 LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD 79
Query: 79 CK-ATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSI 137
C+ A+ IGG + L+ E APKF + +P + V P SI
Sbjct: 80 CEAASRIGGHQKS----MYLDIE---YAPKFISNQTIYYSWEGNPINISCDVKSNPPASI 132
Query: 138 CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFG 187
W R K + N ++ T + +L I+ + D Y+ A N G
Sbjct: 133 HWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIG 182
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVST- 63
AP+FI S + P +C V+ +P ++ W++D L A T +++ ST
Sbjct: 99 YAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKN---TTNLKTYSTG 155
Query: 64 ----LEIINPTKEDIGVYTCKATN 83
LEI + D G Y C ATN
Sbjct: 156 RKMILEIAPTSDNDFGRYNCTATN 179
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 71/185 (38%), Gaps = 43/185 (23%)
Query: 225 KDSTVTLEAEYTGTPTPEVKW--------FKNGKEIVSKDIETK--DNVTKLVIKQTTKK 274
++ VTL + G P PE+ W F G + + IE K + L IK
Sbjct: 14 ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 73
Query: 275 TTGKYEIRVVNEAGEARTSGSVTITVA-------------EAETVMMDVRVESHPTASFQ 321
+G+Y+ + G + S + I A E + + V+S+P AS
Sbjct: 74 DSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIH 133
Query: 322 WFIHSEPVVVTGKP-TPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYS 380
W + +V+ K T L T+S G+++ L I+ + G Y+
Sbjct: 134 W--RRDKLVLPAKNTTNLKTYS-------TGRKMI----------LEIAPTSDNDFGRYN 174
Query: 381 CTAVN 385
CTA N
Sbjct: 175 CTATN 179
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 68/170 (40%), Gaps = 15/170 (8%)
Query: 26 FTCKVEGHPLPTMTWQK--DGTELHATEHYLITTVE-----SVSTLEIINPTKEDIGVYT 78
C EG P+P +TW++ DG + L +E S+L I + D G Y
Sbjct: 20 LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD 79
Query: 79 CK-ATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSI 137
C+ A+ IGG + L+ E APKF + +P + V P SI
Sbjct: 80 CEAASRIGG----HQKSMYLDIE---YAPKFISNQTIYYSWEGNPINISCDVKSNPPASI 132
Query: 138 CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFG 187
W R K + N ++ T + +L I+ + D Y+ A N G
Sbjct: 133 HWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIG 182
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVST- 63
AP+FI S + P +C V+ +P ++ W++D L A T +++ ST
Sbjct: 99 YAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKN---TTNLKTYSTG 155
Query: 64 ----LEIINPTKEDIGVYTCKATN 83
LEI + D G Y C ATN
Sbjct: 156 RKMILEIAPTSDNDFGRYNCTATN 179
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 71/185 (38%), Gaps = 43/185 (23%)
Query: 225 KDSTVTLEAEYTGTPTPEVKW--------FKNGKEIVSKDIETK--DNVTKLVIKQTTKK 274
++ VTL + G P PE+ W F G + + IE K + L IK
Sbjct: 14 ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 73
Query: 275 TTGKYEIRVVNEAGEARTSGSVTITVA-------------EAETVMMDVRVESHPTASFQ 321
+G+Y+ + G + S + I A E + + V+S+P AS
Sbjct: 74 DSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIH 133
Query: 322 WFIHSEPVVVTGKP-TPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYS 380
W + +V+ K T L T+S G+++ L I+ + G Y+
Sbjct: 134 W--RRDKLVLPAKNTTNLKTYS-------TGRKMI----------LEIAPTSDNDFGRYN 174
Query: 381 CTAVN 385
CTA N
Sbjct: 175 CTATN 179
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 22 QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81
+PA+FTC+ G+P+ T++W KDG + +E S L I + KED G+Y C
Sbjct: 329 RPAVFTCQYTGNPIKTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQCFV 378
Query: 82 TNIGGVATCSANL 94
N A SA L
Sbjct: 379 RNDRESAEASAEL 391
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 99/263 (37%), Gaps = 59/263 (22%)
Query: 140 YRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGR-------AECR 192
Y GK +LP +GE L I E P+D Y T R + +
Sbjct: 160 YDGKYLVLP-----------SGE--LHIREVGPEDG--YKSYQCRTKHRLTGETRLSATK 204
Query: 193 ANLVLRKATTIDKPRVLEAPTIV-RPLQALLVPKDSTVTLEAEYTGTPTPEVKWFK---- 247
LV+ + + PR P +V +PL+ ++ T++L G P P +W+K
Sbjct: 205 GRLVITEPISSSAPRT---PALVQKPLELMVA---HTISLLCPAQGFPAPSFRWYKFIEG 258
Query: 248 -NGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV 306
K+ V + K L+IK + +GKY V N G +T+T
Sbjct: 259 TTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP----- 313
Query: 307 MMDVRVESHPTASFQWFIHSEPVVV----TGKPTPLVTWSHDGTPMKEGKEVTIYQDTDG 362
+ +++ PT + + P V TG P V+W DG + + V
Sbjct: 314 -LSAKIDP-PTQTVDF---GRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV-------- 360
Query: 363 LCKLAISEVFPENAGLYSCTAVN 385
L I V E+ G+Y C N
Sbjct: 361 ---LRIESVKKEDKGMYQCFVRN 380
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 69/179 (38%), Gaps = 34/179 (18%)
Query: 28 CKVEGHPLPTMTWQK--DGTELHATEHYLITTVESVS-TLEIINPTKEDIGVYTCKATN- 83
C +G P P+ W K +GT L V+ VS TL I + ED G Y C N
Sbjct: 240 CPAQGFPAPSFRWYKFIEGT-TRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNS 298
Query: 84 IGG-----VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSIC 138
+GG V T +A L + K P + V + PA TG P ++
Sbjct: 299 VGGESVETVLTVTAPL----------SAKIDPPTQTV--DFGRPAVFTCQYTGNPIKTVS 346
Query: 139 WYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVL 197
W + + I GH+ E VL I +D+ +Y N AE A L L
Sbjct: 347 WMKDGKAI----GHS--------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 393
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 67/195 (34%), Gaps = 33/195 (16%)
Query: 110 KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISE 169
KPL+ ++A S L G P PS WY+ E + L I +
Sbjct: 226 KPLELMVAHTIS---LLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKD 282
Query: 170 ATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTV 229
A +D Y N+ G L T+ PL A + P TV
Sbjct: 283 AVVEDSGKYLCVVNNSVGGESVETVL-----------------TVTAPLSAKIDPPTQTV 325
Query: 230 ------TLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRV 283
+YTG P V W K+GK I + + L I+ K+ G Y+ V
Sbjct: 326 DFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE-------SVLRIESVKKEDKGMYQCFV 378
Query: 284 VNEAGEARTSGSVTI 298
N+ A S + +
Sbjct: 379 RNDRESAEASAELKL 393
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 22 QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81
+PA+FTC+ G+P+ T++W KDG + +E S L I + KED G+Y C
Sbjct: 323 RPAVFTCQYTGNPIKTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQCFV 372
Query: 82 TNIGGVATCSANL 94
N A SA L
Sbjct: 373 RNDRESAEASAEL 385
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 99/263 (37%), Gaps = 59/263 (22%)
Query: 140 YRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGR-------AECR 192
Y GK +LP +GE L I E P+D Y T R + +
Sbjct: 154 YDGKYLVLP-----------SGE--LHIREVGPEDG--YKSYQCRTKHRLTGETRLSATK 198
Query: 193 ANLVLRKATTIDKPRVLEAPTIV-RPLQALLVPKDSTVTLEAEYTGTPTPEVKWFK---- 247
LV+ + + PR P +V +PL+ ++ T++L G P P +W+K
Sbjct: 199 GRLVITEPISSSAPR---TPALVQKPLELMVA---HTISLLCPAQGFPAPSFRWYKFIEG 252
Query: 248 -NGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV 306
K+ V + K L+IK + +GKY V N G +T+T
Sbjct: 253 TTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP----- 307
Query: 307 MMDVRVESHPTASFQWFIHSEPVVV----TGKPTPLVTWSHDGTPMKEGKEVTIYQDTDG 362
+ +++ PT + + P V TG P V+W DG + + V
Sbjct: 308 -LSAKIDP-PTQTVDF---GRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV-------- 354
Query: 363 LCKLAISEVFPENAGLYSCTAVN 385
L I V E+ G+Y C N
Sbjct: 355 ---LRIESVKKEDKGMYQCFVRN 374
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 69/179 (38%), Gaps = 34/179 (18%)
Query: 28 CKVEGHPLPTMTWQK--DGTELHATEHYLITTVESVS-TLEIINPTKEDIGVYTCKATN- 83
C +G P P+ W K +GT L V+ VS TL I + ED G Y C N
Sbjct: 234 CPAQGFPAPSFRWYKFIEGT-TRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNS 292
Query: 84 IGG-----VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSIC 138
+GG V T +A L + K P + V + PA TG P ++
Sbjct: 293 VGGESVETVLTVTAPL----------SAKIDPPTQTV--DFGRPAVFTCQYTGNPIKTVS 340
Query: 139 WYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVL 197
W + + I GH+ E VL I +D+ +Y N AE A L L
Sbjct: 341 WMKDGKAI----GHS--------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 67/195 (34%), Gaps = 33/195 (16%)
Query: 110 KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISE 169
KPL+ ++A S L G P PS WY+ E + L I +
Sbjct: 220 KPLELMVAHTIS---LLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKD 276
Query: 170 ATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTV 229
A +D Y N+ G L T+ PL A + P TV
Sbjct: 277 AVVEDSGKYLCVVNNSVGGESVETVL-----------------TVTAPLSAKIDPPTQTV 319
Query: 230 ------TLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRV 283
+YTG P V W K+GK I + + L I+ K+ G Y+ V
Sbjct: 320 DFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE-------SVLRIESVKKEDKGMYQCFV 372
Query: 284 VNEAGEARTSGSVTI 298
N+ A S + +
Sbjct: 373 RNDRESAEASAELKL 387
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 66/176 (37%), Gaps = 19/176 (10%)
Query: 20 QEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES--VSTLEIINPTKEDIGVY 77
Q QP C VEG P + W KDG + + I E + L + + + D G Y
Sbjct: 16 QGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRY 75
Query: 78 TCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP-S 136
C+ + G + +E P FT K + +P L G P P +
Sbjct: 76 WCQVEDGGETEISQPVWLTVEG-----VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVT 130
Query: 137 ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECR 192
I W+RG +I P VL+++ T +S +A N G A R
Sbjct: 131 IVWWRGTTKI---------GGPAPSPSVLNVTGVT--QSTXFSCEAHNLKGLASSR 175
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 221 LLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVTKLVIKQTTKKT 275
L V + V L G P+++W K+G + + D + + + L +K +
Sbjct: 12 LTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSD 71
Query: 276 TGKYEIRVVNEAGEARTSGSVTITV 300
G+Y + V + GE S V +TV
Sbjct: 72 AGRYWCQ-VEDGGETEISQPVWLTV 95
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
+ R + K + + ++ + A F+C +G P+PT+TW + G L + + +TT + ST E
Sbjct: 8 SSRILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 67
Query: 66 IINPTKEDIGVYTCKATNIGG 86
I + D G Y+ N G
Sbjct: 68 ISSVQASDEGNYSVVVENSEG 88
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 108 FTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSI 167
TKP + E +S A G P P++ W R K ++L + + T + I
Sbjct: 12 LTKPRSMTVYEGES-ARFSCDTDGEPVPTVTWLR-KGQVLSTSAR-HQVTTTKYKSTFEI 68
Query: 168 SEATPQDEAVYSVKAVNTFGRAECRANLVLRK 199
S DE YSV N+ G+ E L ++K
Sbjct: 69 SSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 100
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES-VST 63
+AP F ++ + Q + C V G P+P +TW +G + Y +T E+ V+
Sbjct: 10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQ----YARSTCEAGVAE 65
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
L I + ED G YTC A N G +CSA + V
Sbjct: 66 LHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT---G 161
AP F+ LK L+ +V G P P I W NG +++ +T G
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLL--------NGQPIQYARSTCEAG 62
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRA 193
L I +A P+D Y+ A N G+ C A
Sbjct: 63 VAELHIQDALPEDHGTYTCLAENALGQVSCSA 94
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 35/88 (39%)
Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQ 270
AP+ L+ V + L+ GTP P + W NG+ I + V +L I+
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQD 70
Query: 271 TTKKTTGKYEIRVVNEAGEARTSGSVTI 298
+ G Y N G+ S VT+
Sbjct: 71 ALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
V G P P +TW +G P++ + G+ +L I + PE+ G Y+C A N
Sbjct: 35 VRGTPVPRITWLLNGQPIQYARSTC----EAGVAELHIQDALPEDHGTYTCLAEN 85
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 45/129 (34%), Gaps = 44/129 (34%)
Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT---G 463
AP F+ LK L+ +V G P P I W NG +++ +T G
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLL--------NGQPIQYARSTCEAG 62
Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
L I +A P+D Y TC AEN G
Sbjct: 63 VAELHIQDALPEDHGTY---------------------------------TCLAENALGQ 89
Query: 524 VTCTATLSL 532
V+C+A +++
Sbjct: 90 VSCSAWVTV 98
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE-----HYLITT 57
E PR +E ++ + +PA CK EG P PT+ W K G + + H ++
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 58 VESVSTLEIIN--PTKEDIGVYTCKATNIGGVA 88
S+ L I++ ++ D GVY C A N G A
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEA 98
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN----GHTMEFNPTTG 161
P+ + +I PATL GRPTP+I WY+G E + D H M P+
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLL-PSGS 68
Query: 162 ECVLSI--SEATPQDEAVYSVKAVNTFGRA 189
L I + DE VY A N G A
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEA 98
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPD 451
P+ + +I PATL GRPTP+I WY+G E + D
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETD 53
Score = 35.4 bits (80), Expect = 0.080, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 206 PRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEI 252
PR++E P+ L+V K TL + G PTP ++W+K G+ +
Sbjct: 10 PRIVEHPS------DLIVSKGEPATLNCKAEGRPTPTIEWYKGGERV 50
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 1/97 (1%)
Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
S P F L + V G P P + W R ++ + PD E G
Sbjct: 2 SKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAE-EAEGG 60
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198
C L I A D Y+ KAVN +G +C A L +R
Sbjct: 61 LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVR 97
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 19/87 (21%)
Query: 299 TVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQ 358
+V E + V+M +RV+ G+P P+V+W + P++ + +
Sbjct: 16 SVREGQDVIMSIRVQ-------------------GEPKPVVSWLRNRQPVRPDQRRFAEE 56
Query: 359 DTDGLCKLAISEVFPENAGLYSCTAVN 385
GLC+L I +AG Y+C AVN
Sbjct: 57 AEGGLCRLRILAAERGDAGFYTCKAVN 83
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES-VSTLE 65
P F + + Q + + +V+G P P ++W ++ + + E + L
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLR 65
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIV 96
I+ + D G YTCKA N G C A L V
Sbjct: 66 ILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 32.3 bits (72), Expect = 0.65, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 1/81 (1%)
Query: 404 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
S P F L + V G P P + W R ++ + PD E G
Sbjct: 2 SKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAE-EAEGG 60
Query: 464 ECVLSISEATPQDEAVYSVKA 484
C L I A D Y+ KA
Sbjct: 61 LCRLRILAAERGDAGFYTCKA 81
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 127/328 (38%), Gaps = 48/328 (14%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPT-MTWQKDGTELHATEHYLITTVESVSTL 64
P F+E + V+ E L CKV T + W KD E+ E + + + TL
Sbjct: 7 GPHFVEYLSWEVT-GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--DGICTL 63
Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPK-FTKPLKPVIAEAQSPA 123
I +K+D G+Y + G L+ EA K + IA + +
Sbjct: 64 LITEFSKKDAGIYEVILKDDRGKDKSRLKLV-------DEAFKELMMEVCKKIALSATDL 116
Query: 124 TLKATVTGRPTPSICWYRGKEEIL--PDNGHTMEFNP-----TTGECV-LSISEATPQDE 175
+++T G S Y ++ + NG + ++ TGE + L I+E TP D+
Sbjct: 117 KIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDK 176
Query: 176 AVYSV----------KAVNTFGRA--ECRANLVLRKATTI---DKPRVLEA-PTIVRPLQ 219
Y + K V+ G+A E A K I ++ RVL P +V
Sbjct: 177 GKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVT--- 233
Query: 220 ALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVTKLVIKQTTKK 274
+ + + L G P PEV W KN K + S D E I +
Sbjct: 234 ---IQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEA-GRTAYFTINGVSTA 289
Query: 275 TTGKYEIRVVNEAGEARTSGSVTITVAE 302
+GKY + V N+ G + +V++ + E
Sbjct: 290 DSGKYGLVVKNKYGSETSDFTVSVFIPE 317
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 1 MAEVLAPRFIEKIQPVVSHQEQPAL-FTCKVEGHPLPTMTWQKDGTELHATEH 52
+AE R + + VV+ QE AL TC V G P P ++W K+ L + +H
Sbjct: 216 IAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDH 268
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 439 ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 482
I WY+ + EI D H + G C L I+E + +D +Y V
Sbjct: 39 IVWYKDEREISVDEKHDFK----DGICTLLITEFSKKDAGIYEV 78
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 36/90 (40%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
P + +Q + A F K G P PT W KDG + Y ++ + LEI
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEI 66
Query: 67 INPTKEDIGVYTCKATNIGGVATCSANLIV 96
D G+YTC N G + S L +
Sbjct: 67 HKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 305 TVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLC 364
T + D V S A F V TG+P P W+ DG + +G + + +D G
Sbjct: 11 TGLQDTTVSSDSVAKF-------AVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFF 63
Query: 365 KLAISEVFPENAGLYSCTAVN 385
L I + ++GLY+CT N
Sbjct: 64 -LEIHKTDTSDSGLYTCTVKN 83
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVS----KDIETKDNVTKLV 267
P IV LQ V DS + TG P P W K+GK I K E K L
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFF-LE 65
Query: 268 IKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
I +T +G Y V N AG +S +TI
Sbjct: 66 IHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 2/93 (2%)
Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 165
P L+ + S A TG P P+ W + + I G + + G L
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAIT--QGGKYKLSEDKGGFFL 64
Query: 166 SISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198
I + D +Y+ N+ G L ++
Sbjct: 65 EIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVTKLVIKQTTKKTTG 277
+ + +T+ +TG PTPEV W G++I S++ IE D++T L+I K+ G
Sbjct: 17 IDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGG 76
Query: 278 KYEIRVVNEAG 288
Y + + NE G
Sbjct: 77 LYTLSLGNEFG 87
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 7 PRFIEKIQPVVSHQEQPAL-FTCKVEGHPLPTMTWQKDGTELHATEH--YLITTVESVST 63
P IE + +S E L C G P P +TW G ++H+ E + I + ++T
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 64
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANL 94
L I++ K+D G+YT N G + + N+
Sbjct: 65 LIIMDVQKQDGGLYTLSLGNEFGSDSATVNI 95
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 29/75 (38%)
Query: 124 TLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAV 183
T+ TG PTP + W G +I T L I + QD +Y++
Sbjct: 24 TVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLG 83
Query: 184 NTFGRAECRANLVLR 198
N FG N+ +R
Sbjct: 84 NEFGSDSATVNIHIR 98
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 332 TGKPTPLVTWSHDGTPMKEGKEVTIY-QDTDGLCKLAISEVFPENAGLYSCTAVN 385
TG+PTP VTWS G + ++ + ++TD L L I +V ++ GLY+ + N
Sbjct: 30 TGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGN 84
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVTKLVIKQTTKKTTG 277
+ + +T+ +TG PTPEV W G++I S++ IE D++T L+I K+ G
Sbjct: 19 IDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGG 78
Query: 278 KYEIRVVNEAG 288
Y + + NE G
Sbjct: 79 LYTLSLGNEFG 89
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 7 PRFIEKIQPVVSHQEQPAL-FTCKVEGHPLPTMTWQKDGTELHATEH--YLITTVESVST 63
P IE + +S E L C G P P +TW G ++H+ E + I + ++T
Sbjct: 7 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 66
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANL 94
L I++ K+D G+YT N G + + N+
Sbjct: 67 LIIMDVQKQDGGLYTLSLGNEFGSDSATVNI 97
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 332 TGKPTPLVTWSHDGTPMKEGKEVTIY-QDTDGLCKLAISEVFPENAGLYSCTAVN 385
TG+PTP VTWS G + ++ + ++TD L L I +V ++ GLY+ + N
Sbjct: 32 TGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGN 86
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 29/75 (38%)
Query: 124 TLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAV 183
T+ TG PTP + W G +I T L I + QD +Y++
Sbjct: 26 TVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLG 85
Query: 184 NTFGRAECRANLVLR 198
N FG N+ +R
Sbjct: 86 NEFGSDSATVNIHIR 100
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 75/199 (37%), Gaps = 45/199 (22%)
Query: 26 FTCKVEGHPLPTMTWQKDGTEL---HATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82
F C G+P+PTM W K+G E H Y + +E + P+ D G YTC
Sbjct: 39 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS--DKGNYTCVVE 96
Query: 83 NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG----------R 132
N G + +L V+E+ P +P++ +A PA V G
Sbjct: 97 NEYGSINHTYHLDVVERS----------PHRPIL-QAGLPANASTVVGGDVEFVCKVYSD 145
Query: 133 PTPSICWYRGKE--------------EILPDNGHTMEFNPTTGECVLSISEATPQDEAVY 178
P I W + E ++L +G N + E VL++ T D Y
Sbjct: 146 AQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSG----INSSNAE-VLALFNVTEADAGEY 200
Query: 179 SVKAVNTFGRAECRANLVL 197
K N G+A A L +
Sbjct: 201 ICKVSNYIGQANQSAWLTV 219
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 26 FTCKVEGHPLPTMTW----QKDGTE--------LHATEHYLITTVESVSTLEIINPTKED 73
F CKV P + W +K+G++ L +H I + + L + N T+ D
Sbjct: 138 FVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINS-SNAEVLALFNVTEAD 196
Query: 74 IGVYTCKATNIGGVATCSANLIVLEKEES 102
G Y CK +N G A SA L VL K+++
Sbjct: 197 AGEYICKVSNYIGQANQSAWLTVLPKQQA 225
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGK 278
VP +TV G P P ++W KNGKE + + ++ L+++ G
Sbjct: 31 VPAFNTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 90
Query: 279 YEIRVVNEAG 288
Y V NE G
Sbjct: 91 YTCVVENEYG 100
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 69/215 (32%), Gaps = 45/215 (20%)
Query: 333 GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPXXXXXX 392
G P P + W +G K+ + Y+ + L + V P + G Y+C N
Sbjct: 45 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 104
Query: 393 XXXXXXXXXXXSGEAPKFTKPLKPVIAEAQSPATLKATVTG----------RPTPSICWY 442
P +P++ +A PA V G P I W
Sbjct: 105 TYHLDVVERS----------PHRPIL-QAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 153
Query: 443 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLI 502
+ E+ NG S+ P V S + N VL +
Sbjct: 154 KHVEK----NG----------------SKYGPDGLPYLKVLKHSG----INSSNAEVLAL 189
Query: 503 SKITRDQIGDVTCRAENVAGSVTCTATLSLLPESE 537
+T G+ C+ N G +A L++LP+ +
Sbjct: 190 FNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQ 224
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 42/92 (45%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
P F+ + +PV A C V G P P + W+K G +L A+E + L +
Sbjct: 15 PCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLL 74
Query: 67 INPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
D GVY C+A N G A +A + VLE
Sbjct: 75 TAALPTDAGVYVCRARNAAGEAYAAAAVTVLE 106
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 101 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160
+ G P F + +PV + + A LK V G P P + W +G +++ + F
Sbjct: 10 DQGSPPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQL--AASERLSFPADG 67
Query: 161 GECVLSISEATPQDEAVYSVKAVN 184
E L ++ A P D VY +A N
Sbjct: 68 AEHGLLLTAALPTDAGVYVCRARN 91
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 464
G P F + +PV + + A LK V G P P + W +G +++ + F E
Sbjct: 12 GSPPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQL--AASERLSFPADGAE 69
Query: 465 CVLSISEATPQDEAVYSVKA 484
L ++ A P D VY +A
Sbjct: 70 HGLLLTAALPTDAGVYVCRA 89
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 330 VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
VV G+P P+V W G + + ++ D L ++ P +AG+Y C A N
Sbjct: 37 VVLGEPPPVVVWEKGGQQLAASERLSFPAD-GAEHGLLLTAALPTDAGVYVCRARN 91
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 25 LFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI 84
+ +C G P+PT+ W+KDG L +T+ I +E+ L+I D G YTC A+
Sbjct: 27 VLSCVATGSPVPTILWRKDGV-LVSTQDSRIKQLEN-GVLQIRYAKLGDTGRYTCIASTP 84
Query: 85 GGVATCSANLIVLEKEESGEAPKFTKP 111
G AT SA + V E + P+ T P
Sbjct: 85 SGEATWSAYIEVQEFGVPVQPPRPTDP 111
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 226 DSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKD-NVTKLVIKQTTKKTTGKYEIRVV 284
D T L TG+P P + W K+G + ++D K L I+ TG+Y
Sbjct: 23 DGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIAS 82
Query: 285 NEAGEARTSGSVTI 298
+GEA S + +
Sbjct: 83 TPSGEATWSAYIEV 96
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 330 VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNP 386
V TG P P + W DG + ++ I Q +G+ ++ +++ + G Y+C A P
Sbjct: 31 VATGSPVPTILWRKDGV-LVSTQDSRIKQLENGVLQIRYAKL--GDTGRYTCIASTP 84
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 17/116 (14%)
Query: 26 FTCKVEGHPLPTMTWQKDGTEL---HATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82
F C G+P+PTM W K+G E H Y + +E + P+ D G YTC
Sbjct: 30 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS--DKGNYTCVVE 87
Query: 83 NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSIC 138
N G + +L V+E+ P +P++ +A PA +TV G +C
Sbjct: 88 NEYGSINHTYHLDVVERS----------PHRPIL-QAGLPAN-ASTVVGGDVEFVC 131
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 68/186 (36%), Gaps = 31/186 (16%)
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGK 278
VP +TV G P P ++W KNGKE + + ++ L+++ G
Sbjct: 22 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 81
Query: 279 YEIRVVNEAGEARTSGSVTITV-------------AEAETVM-MDV----RVESHPTASF 320
Y V NE G + + + A A TV+ DV +V S
Sbjct: 82 YTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHI 141
Query: 321 QWFIHSEPVVVTGKPTPLVTWSHDGTP-MKEGKEVTIYQDTDGLCKLAISEVFPENAGLY 379
QW H E P DG P +K K + + L I V E+AG Y
Sbjct: 142 QWIKHVEKNGSKYGP--------DGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEY 193
Query: 380 SCTAVN 385
+C A N
Sbjct: 194 TCLAGN 199
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 75/212 (35%), Gaps = 43/212 (20%)
Query: 333 GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPXXXXXX 392
G P P + W +G K+ + Y+ + L + V P + G Y+C N
Sbjct: 36 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 95
Query: 393 XXXXXXXXXXXSGEAPKFTKPLKPVIAEAQSPATLKATVTGR----------PTPSICWY 442
P +P++ +A PA V G P I W
Sbjct: 96 TYHLDVVERS----------PHRPIL-QAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 144
Query: 443 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLI 502
+ E+ NG ++ P G L + +KA+ T TD VL I
Sbjct: 145 KHVEK----NG--SKYGPD-GLPYLKV------------LKAAGVNT---TDKEIEVLYI 182
Query: 503 SKITRDQIGDVTCRAENVAGSVTCTATLSLLP 534
+T + G+ TC A N G +A L++LP
Sbjct: 183 RNVTFEDAGEYTCLAGNSIGISFHSAWLTVLP 214
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 17/87 (19%)
Query: 26 FTCKVEGHPLPTMTW----QKDGTE-----------LHATEHYLITTVESVSTLEIINPT 70
F CKV P + W +K+G++ L A + TT + + L I N T
Sbjct: 129 FVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAG--VNTTDKEIEVLYIRNVT 186
Query: 71 KEDIGVYTCKATNIGGVATCSANLIVL 97
ED G YTC A N G++ SA L VL
Sbjct: 187 FEDAGEYTCLAGNSIGISFHSAWLTVL 213
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 17/116 (14%)
Query: 26 FTCKVEGHPLPTMTWQKDGTEL---HATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82
F C G+P+PTM W K+G E H Y + +E + P+ D G YTC
Sbjct: 31 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS--DKGNYTCVVE 88
Query: 83 NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSIC 138
N G + +L V+E+ P +P++ +A PA +TV G +C
Sbjct: 89 NEYGSINHTYHLDVVERS----------PHRPIL-QAGLPAN-ASTVVGGDVEFVC 132
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 68/186 (36%), Gaps = 31/186 (16%)
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGK 278
VP +TV G P P ++W KNGKE + + ++ L+++ G
Sbjct: 23 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 82
Query: 279 YEIRVVNEAGEARTSGSVTITV-------------AEAETVM-MDV----RVESHPTASF 320
Y V NE G + + + A A TV+ DV +V S
Sbjct: 83 YTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHI 142
Query: 321 QWFIHSEPVVVTGKPTPLVTWSHDGTP-MKEGKEVTIYQDTDGLCKLAISEVFPENAGLY 379
QW H E P DG P +K K + + L I V E+AG Y
Sbjct: 143 QWIKHVEKNGSKYGP--------DGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEY 194
Query: 380 SCTAVN 385
+C A N
Sbjct: 195 TCLAGN 200
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 75/212 (35%), Gaps = 43/212 (20%)
Query: 333 GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPXXXXXX 392
G P P + W +G K+ + Y+ + L + V P + G Y+C N
Sbjct: 37 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 96
Query: 393 XXXXXXXXXXXSGEAPKFTKPLKPVIAEAQSPATLKATVTGR----------PTPSICWY 442
P +P++ +A PA V G P I W
Sbjct: 97 TYHLDVVERS----------PHRPIL-QAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 145
Query: 443 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLI 502
+ E+ NG ++ P G L + +KA+ T TD VL I
Sbjct: 146 KHVEK----NG--SKYGPD-GLPYLKV------------LKAAGVNT---TDKEIEVLYI 183
Query: 503 SKITRDQIGDVTCRAENVAGSVTCTATLSLLP 534
+T + G+ TC A N G +A L++LP
Sbjct: 184 RNVTFEDAGEYTCLAGNSIGISFHSAWLTVLP 215
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 17/87 (19%)
Query: 26 FTCKVEGHPLPTMTW----QKDGTE-----------LHATEHYLITTVESVSTLEIINPT 70
F CKV P + W +K+G++ L A + TT + + L I N T
Sbjct: 130 FVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAG--VNTTDKEIEVLYIRNVT 187
Query: 71 KEDIGVYTCKATNIGGVATCSANLIVL 97
ED G YTC A N G++ SA L VL
Sbjct: 188 FEDAGEYTCLAGNSIGISFHSAWLTVL 214
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 74/199 (37%), Gaps = 45/199 (22%)
Query: 26 FTCKVEGHPLPTMTWQKDGTEL---HATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82
F C G+P+PTM W K+G E H Y + +E + P+ D G YTC
Sbjct: 39 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS--DKGNYTCVVE 96
Query: 83 NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG----------R 132
N G + +L V+E+ +P++ +A PA V G
Sbjct: 97 NEYGSINHTYHLDVVERSRH----------RPIL-QAGLPANASTVVGGDVEFVCKVYSD 145
Query: 133 PTPSICWYRGKE--------------EILPDNGHTMEFNPTTGECVLSISEATPQDEAVY 178
P I W + E ++L +G N + E VL++ T D Y
Sbjct: 146 AQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSG----INSSNAE-VLALFNVTEADAGEY 200
Query: 179 SVKAVNTFGRAECRANLVL 197
K N G+A A L +
Sbjct: 201 ICKVSNYIGQANQSAWLTV 219
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 26 FTCKVEGHPLPTMTW----QKDGTE--------LHATEHYLITTVESVSTLEIINPTKED 73
F CKV P + W +K+G++ L +H I + + L + N T+ D
Sbjct: 138 FVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINS-SNAEVLALFNVTEAD 196
Query: 74 IGVYTCKATNIGGVATCSANLIVLEKEES 102
G Y CK +N G A SA L VL K+++
Sbjct: 197 AGEYICKVSNYIGQANQSAWLTVLPKQQA 225
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGK 278
VP +TV G P P ++W KNGKE + + ++ L+++ G
Sbjct: 31 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 90
Query: 279 YEIRVVNEAG 288
Y V NE G
Sbjct: 91 YTCVVENEYG 100
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 42/215 (19%), Positives = 68/215 (31%), Gaps = 45/215 (20%)
Query: 333 GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPXXXXXX 392
G P P + W +G K+ + Y+ + L + V P + G Y+C N
Sbjct: 45 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 104
Query: 393 XXXXXXXXXXXSGEAPKFTKPLKPVIAEAQSPATLKATVTG----------RPTPSICWY 442
+P++ +A PA V G P I W
Sbjct: 105 TYHLDVVERSRH----------RPIL-QAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 153
Query: 443 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLI 502
+ E+ NG S+ P V S + N VL +
Sbjct: 154 KHVEK----NG----------------SKYGPDGLPYLKVLKHSG----INSSNAEVLAL 189
Query: 503 SKITRDQIGDVTCRAENVAGSVTCTATLSLLPESE 537
+T G+ C+ N G +A L++LP+ +
Sbjct: 190 FNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQ 224
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 72/189 (38%), Gaps = 17/189 (8%)
Query: 26 FTCKVEGHPLPTMTWQKDGTEL---HATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82
F C G P PT+ W K+G E H Y + ++ + P+ D G YTC
Sbjct: 37 FKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPS--DKGNYTCIVE 94
Query: 83 NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRG 142
N G + L V+E+ + P +A S V P P I W +
Sbjct: 95 NEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALG-SNVEFMCKVYSDPQPHIQWLKH 153
Query: 143 KE----EILPDNGHTMEFNPTTGEC-------VLSISEATPQDEAVYSVKAVNTFGRAEC 191
E +I PDN ++ T G VL + + +D Y+ A N+ G +
Sbjct: 154 IEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHH 213
Query: 192 RANLVLRKA 200
A L + +A
Sbjct: 214 SAWLTVLEA 222
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 66/186 (35%), Gaps = 31/186 (16%)
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGK 278
VP TV + +GTP P ++W KNGKE + + +++ G
Sbjct: 29 VPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGN 88
Query: 279 YEIRVVNEAGEARTSGSVTI------------------TVAEAETVMMDVRVESHPTASF 320
Y V NE G + + + TVA V +V S P
Sbjct: 89 YTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHI 148
Query: 321 QWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCK-LAISEVFPENAGLY 379
QW H E V K P D P + + TD + L + V E+AG Y
Sbjct: 149 QWLKHIE--VNGSKIGP------DNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEY 200
Query: 380 SCTAVN 385
+C A N
Sbjct: 201 TCLAGN 206
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 26 FTCKVEGHPLPTMTWQK----DGTELHATEHYLI---------TTVESVSTLEIINPTKE 72
F CKV P P + W K +G+++ + TT + + L + N + E
Sbjct: 136 FMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFE 195
Query: 73 DIGVYTCKATNIGGVATCSANLIVLEKEE 101
D G YTC A N G++ SA L VLE E
Sbjct: 196 DAGEYTCLAGNSIGLSHHSAWLTVLEALE 224
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 75/198 (37%), Gaps = 39/198 (19%)
Query: 105 APKFTKPLKPVIAEAQSPAT----LKATVTGRPTPSICWYRGKEEILPDN---GHTMEFN 157
AP +T P K PA K +G P P++ W + +E PD+ G+ + +
Sbjct: 13 APYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRY- 71
Query: 158 PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRP 217
+ + P D+ Y+ N +G L + V +P RP
Sbjct: 72 ---ATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDV----------VERSPH--RP 116
Query: 218 LQALLVPKDSTVTLEA------EYTGTPTPEVKWFK----NGKEIVSKDIETKDNVTKLV 267
+ +P + TV L + + P P ++W K NG +I DN+ +
Sbjct: 117 ILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKI------GPDNLPYVQ 170
Query: 268 IKQTTKKTTGKYEIRVVN 285
I +T T E+ V++
Sbjct: 171 ILKTAGVNTTDKEMEVLH 188
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 72/189 (38%), Gaps = 17/189 (8%)
Query: 26 FTCKVEGHPLPTMTWQKDGTEL---HATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82
F C G P PT+ W K+G E H Y + ++ + P+ D G YTC
Sbjct: 36 FKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPS--DKGNYTCIVE 93
Query: 83 NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRG 142
N G + L V+E+ + P +A S V P P I W +
Sbjct: 94 NEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALG-SNVEFMCKVYSDPQPHIQWLKH 152
Query: 143 KE----EILPDNGHTMEFNPTTGEC-------VLSISEATPQDEAVYSVKAVNTFGRAEC 191
E +I PDN ++ T G VL + + +D Y+ A N+ G +
Sbjct: 153 IEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHH 212
Query: 192 RANLVLRKA 200
A L + +A
Sbjct: 213 SAWLTVLEA 221
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 66/186 (35%), Gaps = 31/186 (16%)
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGK 278
VP TV + +GTP P ++W KNGKE + + +++ G
Sbjct: 28 VPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGN 87
Query: 279 YEIRVVNEAGEARTSGSVTI------------------TVAEAETVMMDVRVESHPTASF 320
Y V NE G + + + TVA V +V S P
Sbjct: 88 YTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHI 147
Query: 321 QWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCK-LAISEVFPENAGLY 379
QW H E V K P D P + + TD + L + V E+AG Y
Sbjct: 148 QWLKHIE--VNGSKIGP------DNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEY 199
Query: 380 SCTAVN 385
+C A N
Sbjct: 200 TCLAGN 205
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 26 FTCKVEGHPLPTMTWQK----DGTELHATEHYLI---------TTVESVSTLEIINPTKE 72
F CKV P P + W K +G+++ + TT + + L + N + E
Sbjct: 135 FMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFE 194
Query: 73 DIGVYTCKATNIGGVATCSANLIVLEKEE 101
D G YTC A N G++ SA L VLE E
Sbjct: 195 DAGEYTCLAGNSIGLSHHSAWLTVLEALE 223
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 75/198 (37%), Gaps = 39/198 (19%)
Query: 105 APKFTKPLKPVIAEAQSPAT----LKATVTGRPTPSICWYRGKEEILPDN---GHTMEFN 157
AP +T P K PA K +G P P++ W + +E PD+ G+ + +
Sbjct: 12 APYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRY- 70
Query: 158 PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRP 217
+ + P D+ Y+ N +G L + V +P RP
Sbjct: 71 ---ATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDV----------VERSPH--RP 115
Query: 218 LQALLVPKDSTVTLEA------EYTGTPTPEVKWFK----NGKEIVSKDIETKDNVTKLV 267
+ +P + TV L + + P P ++W K NG +I DN+ +
Sbjct: 116 ILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKI------GPDNLPYVQ 169
Query: 268 IKQTTKKTTGKYEIRVVN 285
I +T T E+ V++
Sbjct: 170 ILKTAGVNTTDKEMEVLH 187
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
PRFI K + Q A F C+V P +TW KD EL + Y+ + L I
Sbjct: 377 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 436
Query: 67 INPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
+D G YT +A N G ++ L E KF +PL+P + +A SP
Sbjct: 437 NRVKGDDKGEYTVRAKNSYG---TKEEIVFLNVTRHSEPLKF-EPLEP-MKKAPSP 487
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 16/139 (11%)
Query: 165 LSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIV--RPLQALL 222
L+I T D+ +Y+ A + L+ +K +T RV E P + +++L+
Sbjct: 162 LTIDGVTRSDQGLYTCAA---------SSGLMTKKNSTF--VRVHEKPFVAFGSGMESLV 210
Query: 223 -VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEI 281
V + A+Y G P PE+KW+KNG + S +V L I + +++ TG Y +
Sbjct: 211 EATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHV--LTIMEVSERDTGNYTV 268
Query: 282 RVVNEAGEARTSGSVTITV 300
+ N + + S V++ V
Sbjct: 269 ILTNPISKEKQSHVVSLVV 287
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 19/188 (10%)
Query: 61 VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVI-AEA 119
+STL I T+ D G+YTC A++ G+ T + V E+ A F ++ ++ A
Sbjct: 159 LSTLTIDGVTRSDQGLYTCAASS--GLMTKKNSTFVRVHEKPFVA--FGSGMESLVEATV 214
Query: 120 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT-GECVLSISEATPQDEAVY 178
+ A G P P I WY+ NG +E N T VL+I E + +D Y
Sbjct: 215 GERVRIPAKYLGYPPPEIKWYK--------NGIPLESNHTIKAGHVLTIMEVSERDTGNY 266
Query: 179 SVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT 238
+V N + E ++++V + + P + +++ P+ + T+T Y
Sbjct: 267 TVILTNPISK-EKQSHVV---SLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTV-YAIP 321
Query: 239 PTPEVKWF 246
P + W+
Sbjct: 322 PPHHIHWY 329
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 48/129 (37%), Gaps = 29/129 (22%)
Query: 29 KVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA 88
K G+P P + W K+G L + T+++ L I+ ++ D G YT TN
Sbjct: 223 KYLGYPPPEIKWYKNGIPLESNH-----TIKAGHVLTIMEVSERDTGNYTVILTN----- 272
Query: 89 TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ--SPA---------TLKATVTGRPTP-S 136
+ KE+ + P I E SP TL TV P P
Sbjct: 273 -------PISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHH 325
Query: 137 ICWYRGKEE 145
I WY EE
Sbjct: 326 IHWYWQLEE 334
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 17/116 (14%)
Query: 26 FTCKVEGHPLPTMTWQKDGTEL---HATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82
F C G+P+PTM W K+G E H Y + +E + P+ D G YTC
Sbjct: 31 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS--DKGNYTCVVE 88
Query: 83 NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSIC 138
N G + +L V+E+ P +P++ +A PA +TV G +C
Sbjct: 89 NEYGSINHTYHLDVVERW----------PHRPIL-QAGLPAN-ASTVVGGDVEFVC 132
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 68/186 (36%), Gaps = 31/186 (16%)
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGK 278
VP +TV G P P ++W KNGKE + + ++ L+++ G
Sbjct: 23 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 82
Query: 279 YEIRVVNEAGEARTSGSVTITV-------------AEAETVM-MDV----RVESHPTASF 320
Y V NE G + + + A A TV+ DV +V S
Sbjct: 83 YTCVVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHI 142
Query: 321 QWFIHSEPVVVTGKPTPLVTWSHDGTP-MKEGKEVTIYQDTDGLCKLAISEVFPENAGLY 379
QW H E P DG P +K K + + L I V E+AG Y
Sbjct: 143 QWIKHVEKNGSKYGP--------DGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEY 194
Query: 380 SCTAVN 385
+C A N
Sbjct: 195 TCLAGN 200
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 75/212 (35%), Gaps = 43/212 (20%)
Query: 333 GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPXXXXXX 392
G P P + W +G K+ + Y+ + L + V P + G Y+C N
Sbjct: 37 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 96
Query: 393 XXXXXXXXXXXSGEAPKFTKPLKPVIAEAQSPATLKATVTGR----------PTPSICWY 442
P +P++ +A PA V G P I W
Sbjct: 97 TYHLDVVERW----------PHRPIL-QAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 145
Query: 443 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLI 502
+ E+ NG ++ P G L + +KA+ T TD VL I
Sbjct: 146 KHVEK----NG--SKYGPD-GLPYLKV------------LKAAGVNT---TDKEIEVLYI 183
Query: 503 SKITRDQIGDVTCRAENVAGSVTCTATLSLLP 534
+T + G+ TC A N G +A L++LP
Sbjct: 184 RNVTFEDAGEYTCLAGNSIGISFHSAWLTVLP 215
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 17/87 (19%)
Query: 26 FTCKVEGHPLPTMTW----QKDGTE-----------LHATEHYLITTVESVSTLEIINPT 70
F CKV P + W +K+G++ L A + TT + + L I N T
Sbjct: 130 FVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAG--VNTTDKEIEVLYIRNVT 187
Query: 71 KEDIGVYTCKATNIGGVATCSANLIVL 97
ED G YTC A N G++ SA L VL
Sbjct: 188 FEDAGEYTCLAGNSIGISFHSAWLTVL 214
>pdb|2Y23|A Chain A, Crystal Structure Of The Myomesin Domains My9-My11
Length = 312
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/285 (19%), Positives = 121/285 (42%), Gaps = 36/285 (12%)
Query: 34 PLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCS-- 91
P +W KD + + + + + + + +D+G+Y+C T+ G+A+
Sbjct: 30 PKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLI 89
Query: 92 -----ANLIVLEKEESGEAPKF-TKPLKP-----VIAEAQSPATLKA-TVTGRPTPSICW 139
L+ L E KF T P+K ++ + Q ++A ++G + +
Sbjct: 90 DEEELKRLLALSHEH-----KFPTVPVKSELAVEILEKGQVRFWMQAEKLSG--NAKVNY 142
Query: 140 YRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVL-- 197
++EI + M + TG + + + +DE Y+ + + G+A + +VL
Sbjct: 143 IFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKATNHSTVVLVG 200
Query: 198 ------RKATTIDKPRVL--EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP-EVKWFKN 248
+K + + + P V L + V + V L+ + + W+K+
Sbjct: 201 DVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKD 259
Query: 249 GKEI-VSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART 292
+EI V + + KD + L+I + +KK G YE+ + ++ G+ ++
Sbjct: 260 EREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKS 304
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 17/138 (12%)
Query: 72 EDIGVYTC-----KATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAE-------A 119
ED G YT KATN V L+KE + ++ + P E
Sbjct: 176 EDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTG 235
Query: 120 QSPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVY 178
+ LK V + I WY+ + EI D H + G C L I+E + +D +Y
Sbjct: 236 ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK----DGICTLLITEFSKKDAGIY 291
Query: 179 SVKAVNTFGRAECRANLV 196
V + G+ + R LV
Sbjct: 292 EVILKDDRGKDKSRLKLV 309
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGE 464
+ P F + L + + LK V + I WY+ + EI D H + G
Sbjct: 221 QGPHFVEYLSWEVT-GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK----DGI 275
Query: 465 CVLSISEATPQDEAVYSV 482
C L I+E + +D +Y V
Sbjct: 276 CTLLITEFSKKDAGIYEV 293
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 72/189 (38%), Gaps = 17/189 (8%)
Query: 26 FTCKVEGHPLPTMTWQKDGTEL---HATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82
F C G P PT+ W K+G E H Y + ++ + P+ D G YTC
Sbjct: 36 FKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPS--DKGNYTCIVE 93
Query: 83 NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRG 142
N G + L V+E+ + P +A S V P P I W +
Sbjct: 94 NEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALG-SNVEFMCKVYSDPQPHIQWLKH 152
Query: 143 KE----EILPDNGHTMEFNPTTGEC-------VLSISEATPQDEAVYSVKAVNTFGRAEC 191
E +I PDN ++ T G VL + + +D Y+ A N+ G +
Sbjct: 153 IEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHH 212
Query: 192 RANLVLRKA 200
A L + +A
Sbjct: 213 SAWLTVLEA 221
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 66/186 (35%), Gaps = 31/186 (16%)
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGK 278
VP TV + +GTP P ++W KNGKE + + +++ G
Sbjct: 28 VPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGN 87
Query: 279 YEIRVVNEAGEARTSGSVTI------------------TVAEAETVMMDVRVESHPTASF 320
Y V NE G + + + TVA V +V S P
Sbjct: 88 YTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHI 147
Query: 321 QWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCK-LAISEVFPENAGLY 379
QW H E V K P D P + + TD + L + V E+AG Y
Sbjct: 148 QWLKHIE--VNGSKIGP------DNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEY 199
Query: 380 SCTAVN 385
+C A N
Sbjct: 200 TCLAGN 205
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 26 FTCKVEGHPLPTMTWQK----DGTELHATEHYLI---------TTVESVSTLEIINPTKE 72
F CKV P P + W K +G+++ + TT + + L + N + E
Sbjct: 135 FMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFE 194
Query: 73 DIGVYTCKATNIGGVATCSANLIVLEKEE 101
D G YTC A N G++ SA L VLE E
Sbjct: 195 DAGEYTCLAGNSIGLSHHSAWLTVLEALE 223
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 75/198 (37%), Gaps = 39/198 (19%)
Query: 105 APKFTKPLKPVIAEAQSPAT----LKATVTGRPTPSICWYRGKEEILPDN---GHTMEFN 157
AP +T P K PA K +G P P++ W + +E PD+ G+ + +
Sbjct: 12 APYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRY- 70
Query: 158 PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRP 217
+ + P D+ Y+ N +G L + V +P RP
Sbjct: 71 ---ATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDV----------VERSPH--RP 115
Query: 218 LQALLVPKDSTVTLEA------EYTGTPTPEVKWFK----NGKEIVSKDIETKDNVTKLV 267
+ +P + TV L + + P P ++W K NG +I DN+ +
Sbjct: 116 ILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKI------GPDNLPYVQ 169
Query: 268 IKQTTKKTTGKYEIRVVN 285
I +T T E+ V++
Sbjct: 170 ILKTAGVNTTDKEMEVLH 187
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE-HYLITTVESVSTLE 65
PRFI+ + + + + KV G P P ++W +G + + + H +I + + + +L
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKE 100
D G Y C A N G AT + L VL KE
Sbjct: 66 FEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 206 PRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKD 261
PR ++ P + + + + ++ + +G P P+V W+ NG+ + S D I ++
Sbjct: 6 PRFIQVP------ENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEK 59
Query: 262 NVTKLVIKQTTKKTTGKYEIRVVNEAGEA 290
+ L+ + G Y N AGEA
Sbjct: 60 GLHSLIFEVVRASDAGAYACVAKNRAGEA 88
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
V+G P P V+W +G ++ + GL L V +AG Y+C A N
Sbjct: 29 VSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKN 83
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 17/116 (14%)
Query: 26 FTCKVEGHPLPTMTWQKDGTEL---HATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82
F C G+P+PTM W K+G E H Y + +E + P+ D G YTC
Sbjct: 29 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS--DKGNYTCVVE 86
Query: 83 NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSIC 138
N G + +L V+E+ +P++ +A PA +TV G +C
Sbjct: 87 NEYGSINHTYHLDVVERSRH----------RPIL-QAGLPAN-ASTVVGGDVEFVC 130
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 68/186 (36%), Gaps = 31/186 (16%)
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGK 278
VP +TV G P P ++W KNGKE + + ++ L+++ G
Sbjct: 21 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 80
Query: 279 YEIRVVNEAGEARTSGSVTITV-------------AEAETVM-MDV----RVESHPTASF 320
Y V NE G + + + A A TV+ DV +V S
Sbjct: 81 YTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHI 140
Query: 321 QWFIHSEPVVVTGKPTPLVTWSHDGTP-MKEGKEVTIYQDTDGLCKLAISEVFPENAGLY 379
QW H E P DG P +K K + + L I V E+AG Y
Sbjct: 141 QWIKHVEKNGSKYGP--------DGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEY 192
Query: 380 SCTAVN 385
+C A N
Sbjct: 193 TCLAGN 198
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 17/87 (19%)
Query: 26 FTCKVEGHPLPTMTW----QKDGTE-----------LHATEHYLITTVESVSTLEIINPT 70
F CKV P + W +K+G++ L A + TT + + L I N T
Sbjct: 128 FVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAG--VNTTDKEIEVLYIRNVT 185
Query: 71 KEDIGVYTCKATNIGGVATCSANLIVL 97
ED G YTC A N G++ SA L VL
Sbjct: 186 FEDAGEYTCLAGNSIGISFHSAWLTVL 212
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 74/212 (34%), Gaps = 43/212 (20%)
Query: 333 GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPXXXXXX 392
G P P + W +G K+ + Y+ + L + V P + G Y+C N
Sbjct: 35 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 94
Query: 393 XXXXXXXXXXXSGEAPKFTKPLKPVIAEAQSPATLKATVTGR----------PTPSICWY 442
+P++ +A PA V G P I W
Sbjct: 95 TYHLDVVERSRH----------RPIL-QAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 143
Query: 443 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLI 502
+ E+ NG ++ P G L + +KA+ T TD VL I
Sbjct: 144 KHVEK----NG--SKYGPD-GLPYLKV------------LKAAGVNT---TDKEIEVLYI 181
Query: 503 SKITRDQIGDVTCRAENVAGSVTCTATLSLLP 534
+T + G+ TC A N G +A L++LP
Sbjct: 182 RNVTFEDAGEYTCLAGNSIGISFHSAWLTVLP 213
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 17/116 (14%)
Query: 26 FTCKVEGHPLPTMTWQKDGTEL---HATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82
F C G+P+PTM W K+G E H Y + +E + P+ D G YTC
Sbjct: 31 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS--DKGNYTCVVE 88
Query: 83 NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSIC 138
N G + +L V+E+ +P++ +A PA +TV G +C
Sbjct: 89 NEYGSINHTYHLDVVERSRH----------RPIL-QAGLPAN-ASTVVGGDVEFVC 132
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 68/186 (36%), Gaps = 31/186 (16%)
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGK 278
VP +TV G P P ++W KNGKE + + ++ L+++ G
Sbjct: 23 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 82
Query: 279 YEIRVVNEAGEARTSGSVTITV-------------AEAETVM-MDV----RVESHPTASF 320
Y V NE G + + + A A TV+ DV +V S
Sbjct: 83 YTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHI 142
Query: 321 QWFIHSEPVVVTGKPTPLVTWSHDGTP-MKEGKEVTIYQDTDGLCKLAISEVFPENAGLY 379
QW H E P DG P +K K + + L I V E+AG Y
Sbjct: 143 QWIKHVEKNGSKYGP--------DGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEY 194
Query: 380 SCTAVN 385
+C A N
Sbjct: 195 TCLAGN 200
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 17/87 (19%)
Query: 26 FTCKVEGHPLPTMTW----QKDGTE-----------LHATEHYLITTVESVSTLEIINPT 70
F CKV P + W +K+G++ L A + TT + + L I N T
Sbjct: 130 FVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAG--VNTTDKEIEVLYIRNVT 187
Query: 71 KEDIGVYTCKATNIGGVATCSANLIVL 97
ED G YTC A N G++ SA L VL
Sbjct: 188 FEDAGEYTCLAGNSIGISFHSAWLTVL 214
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 74/212 (34%), Gaps = 43/212 (20%)
Query: 333 GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPXXXXXX 392
G P P + W +G K+ + Y+ + L + V P + G Y+C N
Sbjct: 37 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 96
Query: 393 XXXXXXXXXXXSGEAPKFTKPLKPVIAEAQSPATLKATVTGR----------PTPSICWY 442
+P++ +A PA V G P I W
Sbjct: 97 TYHLDVVERSRH----------RPIL-QAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 145
Query: 443 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLI 502
+ E+ NG ++ P G L + +KA+ T TD VL I
Sbjct: 146 KHVEK----NG--SKYGPD-GLPYLKV------------LKAAGVNT---TDKEIEVLYI 183
Query: 503 SKITRDQIGDVTCRAENVAGSVTCTATLSLLP 534
+T + G+ TC A N G +A L++LP
Sbjct: 184 RNVTFEDAGEYTCLAGNSIGISFHSAWLTVLP 215
>pdb|3RBS|A Chain A, Crystal Structure Of The Myomesin Domains 10 And 11
Length = 207
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 17/138 (12%)
Query: 72 EDIGVYTC-----KATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAE-------A 119
ED G YT KATN V L+KE + ++ + P E
Sbjct: 71 EDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTG 130
Query: 120 QSPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVY 178
+ LK V + I WY+ + EI D H + G C L I+E + +D +Y
Sbjct: 131 ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK----DGICTLLITEFSKKDAGIY 186
Query: 179 SVKAVNTFGRAECRANLV 196
V + G+ + R LV
Sbjct: 187 EVILKDDRGKDKSRLKLV 204
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 145 EILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVL------- 197
EI + M + TG + + + +DE Y+ + + G+A + +VL
Sbjct: 43 EIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKATNHSTVVLVGDVFKK 100
Query: 198 -RKATTIDKPRVL--EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP-EVKWFKNGKEI- 252
+K + + + P V L + V + V L+ + + W+K+ +EI
Sbjct: 101 LQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREIS 159
Query: 253 VSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART 292
V + + KD + L+I + +KK G YE+ + ++ G+ ++
Sbjct: 160 VDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKS 199
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGE 464
+ P F + L + + LK V + I WY+ + EI D H + G
Sbjct: 116 QGPHFVEYLSWEVT-GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK----DGI 170
Query: 465 CVLSISEATPQDEAVYSV 482
C L I+E + +D +Y V
Sbjct: 171 CTLLITEFSKKDAGIYEV 188
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 22 QPALFTCKVEGHPLPTMTWQKDGTEL-----HATEHYLITTVESVSTLEIIN-PTKEDIG 75
Q A+ CK G+P P W+K + +++ + I E+ + L I+N ED G
Sbjct: 108 QDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPG 167
Query: 76 VYTCKATNIGGVATCSANLIV 96
Y C ATN G A+ S L V
Sbjct: 168 EYECNATNSIGSASVSTVLRV 188
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 69/200 (34%), Gaps = 22/200 (11%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKV--EGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
PR + + ++ P C + H L W K+G EL AT ++ S +
Sbjct: 4 PRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATR-------KNASNM 56
Query: 65 E--IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
E I P ED G Y C V+ AN + E AP T +
Sbjct: 57 EYRINKPRAEDSGEYHCV---YHFVSAPKANATI----EVKAAPDITGHKRSENKNEGQD 109
Query: 123 ATLKATVTGRPTPSICWYRGK----EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVY 178
A + G P P W + + EEI +G N + ++ +D Y
Sbjct: 110 AMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEY 169
Query: 179 SVKAVNTFGRAECRANLVLR 198
A N+ G A L +R
Sbjct: 170 ECNATNSIGSASVSTVLRVR 189
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 94 LIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHT 153
L VLE+ AP T L+ + T +G P P I W++ E ++ D+G
Sbjct: 3 LTVLERV----APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIV 58
Query: 154 MEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKA 200
++ G L+I +DE +Y+ +A + G A+ A ++ A
Sbjct: 59 LK----DGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 101
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 27 TCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGG 86
+C G+P P + W KD L E I + L I KED G+YTC+A ++ G
Sbjct: 31 SCTASGNPPPQIMWFKDNETL--VEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLG 88
Query: 87 VATCSANLIV 96
A A I+
Sbjct: 89 CAKVEAFFII 98
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Query: 208 VLE--APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIV-SKDIETKDNVT 264
VLE APTI L+ ++ + +G P P++ WFK+ + +V I KD
Sbjct: 5 VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNR 64
Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVM 307
L I++ K+ G Y + + G A+ I A+ +T +
Sbjct: 65 NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNL 107
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466
AP T L+ + T +G P P I W++ E ++ D+G ++ G
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK----DGNRN 65
Query: 467 LSISEATPQDEAVYSVKASS 486
L+I +DE +Y+ +A S
Sbjct: 66 LTIRRVRKEDEGLYTCQACS 85
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 332 TGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTA 383
+G P P + W D + E + + DG L I V E+ GLY+C A
Sbjct: 35 SGNPPPQIMWFKDNETLVEDSGIVL---KDGNRNLTIRRVRKEDEGLYTCQA 83
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 35/80 (43%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
PRFI K + Q A F C+V P +TW KD EL + Y+ + L I
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 542
Query: 67 INPTKEDIGVYTCKATNIGG 86
+D G YT +A N G
Sbjct: 543 NRVKGDDKGEYTVRAKNSYG 562
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 73/193 (37%), Gaps = 40/193 (20%)
Query: 20 QEQPALFTCKVEGHPLPTMTW---QKDGTELHATEHYLITTVESVST-----LEIINPTK 71
+ P +C G P + W Q D T L + + + E T + + T+
Sbjct: 18 ENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTR 77
Query: 72 EDIGVYTCKATNIGG--VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATL--KA 127
ED G YTC + GG LIVL P KP + S AT+ +A
Sbjct: 78 EDTGTYTCMVSEEGGNSYGEVKVKLIVL-----------VPPSKPTV-NIPSSATIGNRA 125
Query: 128 TVT-----GRPTPSICWYRGKEEILPDN--------GHTMEFNPTTGECVLSISEATPQD 174
+T G P W++ ++P N + NPTTGE V A+ D
Sbjct: 126 VLTCSEQDGSPPSEYTWFK-DGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS--D 182
Query: 175 EAVYSVKAVNTFG 187
YS +A N +G
Sbjct: 183 TGEYSCEARNGYG 195
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 71/188 (37%), Gaps = 36/188 (19%)
Query: 223 VPKDSTVTLEAEYTGTPTPEVKW-FKNGK--EIVSKD----IETKDNVTKL----VIKQT 271
+P+++ V L Y+G +P V+W F G +V + +D VT L K
Sbjct: 16 IPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSV 75
Query: 272 TKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASF--QWFIHSEPV 329
T++ TG Y V E G + E + ++ + S PT + I + V
Sbjct: 76 TREDTGTYTCMVSEEGGNS---------YGEVKVKLIVLVPPSKPTVNIPSSATIGNRAV 126
Query: 330 VVT----GKPTPLVTWSHDGTPMKEGKEVT--------IYQDTDGLCKLAISEVFPENAG 377
+ G P TW DG M + T + T G +L + + G
Sbjct: 127 LTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTG--ELVFDPLSASDTG 184
Query: 378 LYSCTAVN 385
YSC A N
Sbjct: 185 EYSCEARN 192
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 26 FTCKVEGHPLPT-MTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI 84
+ CK+E + T +TW +L +E Y IT + V+ L + + TK D G Y CK N
Sbjct: 21 YVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVND 80
Query: 85 GGVATCSANLIV 96
G + A L V
Sbjct: 81 YGEDSSYAELFV 92
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 240 TPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGE 289
+ +V W+ +++ + + I +D V L +K TK G Y +VVN+ GE
Sbjct: 31 STQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGE 83
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG--TELHATEHYLITTVESVST 63
AP FI K Q + C++ P P + W+++ + + L T
Sbjct: 15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVT 74
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
L I + K+D G YT A N GV TC+ L V
Sbjct: 75 LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDV 107
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIET----KDNVTK 265
AP + Q+ V + +V LE + + P P++ W +N E+V + + +DN +
Sbjct: 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNN-EMVQFNTDRISLYQDNTGR 72
Query: 266 --LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV 306
L+IK KK G Y + VNEAG + + +T +T+
Sbjct: 73 VTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTL 115
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 104 EAPKFT-KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 162
AP F KP + E S L+ ++ P P + W R E + + + TG
Sbjct: 14 RAPMFIYKPQSKKVLEGDS-VKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGR 72
Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANL 195
L I + +D Y+V AVN G C L
Sbjct: 73 VTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRL 105
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 331 VTGKPTPLVTWSHDGTPMKEGKE-VTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
++ P P + W + ++ + +++YQD G L I +V ++AG Y+ +AVN
Sbjct: 39 ISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVN 94
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 406 EAPKFT-KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 464
AP F KP + E S L+ ++ P P + W R E + + + TG
Sbjct: 14 RAPMFIYKPQSKKVLEGDS-VKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGR 72
Query: 465 CVLSISEATPQDEAVYSVKA 484
L I + +D Y+V A
Sbjct: 73 VTLLIKDVNKKDAGWYTVSA 92
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 72/199 (36%), Gaps = 45/199 (22%)
Query: 26 FTCKVEGHPLPTMTWQKDGTEL---HATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82
F C G+P PT W K+G E H Y + E + P+ D G YTC
Sbjct: 38 FRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPS--DKGNYTCVVE 95
Query: 83 NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG----------R 132
N G + +L V+E+ P +P++ +A PA V G
Sbjct: 96 NEYGSINHTYHLDVVERS----------PHRPIL-QAGLPANASTVVGGDVEFVCKVYSD 144
Query: 133 PTPSICWYRGKE--------------EILPDNGHTMEFNPTTGECVLSISEATPQDEAVY 178
P I W + E ++L +G N + E VL++ T D Y
Sbjct: 145 AQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSG----INSSNAE-VLALFNVTEADAGEY 199
Query: 179 SVKAVNTFGRAECRANLVL 197
K N G+A A L +
Sbjct: 200 ICKVSNYIGQANQSAWLTV 218
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 26 FTCKVEGHPLPTMTW----QKDGTE--------LHATEHYLITTVESVSTLEIINPTKED 73
F CKV P + W +K+G++ L +H I + + L + N T+ D
Sbjct: 137 FVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINS-SNAEVLALFNVTEAD 195
Query: 74 IGVYTCKATNIGGVATCSANLIVLEKEES 102
G Y CK +N G A SA L VL K+++
Sbjct: 196 AGEYICKVSNYIGQANQSAWLTVLPKQQA 224
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGK 278
VP +TV G P P +W KNGKE + + ++ L+ + G
Sbjct: 30 VPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGN 89
Query: 279 YEIRVVNEAG 288
Y V NE G
Sbjct: 90 YTCVVENEYG 99
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 67/215 (31%), Gaps = 45/215 (20%)
Query: 333 GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPXXXXXX 392
G P P W +G K+ + Y+ + L V P + G Y+C N
Sbjct: 44 GNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINH 103
Query: 393 XXXXXXXXXXXSGEAPKFTKPLKPVIAEAQSPATLKATVTGR----------PTPSICWY 442
P +P++ +A PA V G P I W
Sbjct: 104 TYHLDVVERS----------PHRPIL-QAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 152
Query: 443 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLI 502
+ E+ NG S+ P V S + N VL +
Sbjct: 153 KHVEK----NG----------------SKYGPDGLPYLKVLKHSG----INSSNAEVLAL 188
Query: 503 SKITRDQIGDVTCRAENVAGSVTCTATLSLLPESE 537
+T G+ C+ N G +A L++LP+ +
Sbjct: 189 FNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQ 223
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 41/92 (44%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
P F+ +PV A C V G P P + W+K G +L A+E + L +
Sbjct: 15 PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLL 74
Query: 67 INPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
D GVY C+A N G A +A + VLE
Sbjct: 75 TAALPTDAGVYVCRARNAAGEAYAAAAVTVLE 106
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 101 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160
+ G P F + +PV + + A LK V G P P + W +G +++ + F
Sbjct: 10 DQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAAS--ERLSFPADG 67
Query: 161 GECVLSISEATPQDEAVYSVKAVN 184
E L ++ A P D VY +A N
Sbjct: 68 AEHGLLLTAALPTDAGVYVCRARN 91
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 464
G P F + +PV + + A LK V G P P + W +G +++ + F E
Sbjct: 12 GSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAAS--ERLSFPADGAE 69
Query: 465 CVLSISEATPQDEAVYSVKA 484
L ++ A P D VY +A
Sbjct: 70 HGLLLTAALPTDAGVYVCRA 89
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 330 VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
VV G+P P+V W G + + ++ D L ++ P +AG+Y C A N
Sbjct: 37 VVLGEPPPVVVWEKGGQQLAASERLSFPAD-GAEHGLLLTAALPTDAGVYVCRARN 91
>pdb|2DKU|A Chain A, Solution Structure Of The Third Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 103
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 15/93 (16%)
Query: 9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYL-----ITTVESVST 63
F E++ + ++ A+FTCK E HP T+TW+K EL A+ + +T ++S
Sbjct: 11 FTEELTNLQVEEKGTAVFTCKTE-HPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISA 69
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
LE K D YTC G A A L+V
Sbjct: 70 LE-----KADSDTYTCDI----GQAQSRAQLLV 93
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 38/91 (41%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
APR +++ Q F V+ P + W +G EL + T V TLE
Sbjct: 8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLE 67
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIV 96
I++ +D G Y TN G A+ A L V
Sbjct: 68 ILDCHTDDSGTYRAVCTNYKGEASDYATLDV 98
Score = 35.8 bits (81), Expect = 0.061, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 299 TVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQ 358
T+ A + + +R P FI + V KPT V W H+G ++E ++ Y
Sbjct: 4 TLDHAPRITLRMRSHRVPCGQNTRFI----LNVQSKPTAEVKWYHNGVELQESSKIH-YT 58
Query: 359 DTDGLCKLAISEVFPENAGLYSCTAVN 385
+T G+ L I + +++G Y N
Sbjct: 59 NTSGVLTLEILDCHTDDSGTYRAVCTN 85
Score = 32.3 bits (72), Expect = 0.65, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLV 267
AP I +++ VP PT EVKW+ NG E+ V L
Sbjct: 8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLE 67
Query: 268 IKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
I +G Y N GEA ++ +T
Sbjct: 68 ILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 41/92 (44%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
P F+ +PV A C V G P P + W+K G +L A+E + L +
Sbjct: 14 PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLL 73
Query: 67 INPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
D GVY C+A N G A +A + VLE
Sbjct: 74 TAALPTDAGVYVCRARNAAGEAYAAAAVTVLE 105
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 101 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160
+ G P F + +PV + + A LK V G P P + W +G +++ + F
Sbjct: 9 DQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAAS--ERLSFPADG 66
Query: 161 GECVLSISEATPQDEAVYSVKAVN 184
E L ++ A P D VY +A N
Sbjct: 67 AEHGLLLTAALPTDAGVYVCRARN 90
Score = 36.6 bits (83), Expect = 0.035, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 464
G P F + +PV + + A LK V G P P + W +G +++ + F E
Sbjct: 11 GSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAAS--ERLSFPADGAE 68
Query: 465 CVLSISEATPQDEAVYSVKA 484
L ++ A P D VY +A
Sbjct: 69 HGLLLTAALPTDAGVYVCRA 88
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 330 VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
VV G+P P+V W G + + ++ D L ++ P +AG+Y C A N
Sbjct: 36 VVLGEPPPVVVWEKGGQQLAASERLSFPAD-GAEHGLLLTAALPTDAGVYVCRARN 90
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 27 TCKVEGHPLPTMTWQKDGTELHATEHYLITTVE--SVSTLEIINPTKEDIGVYTCKATN 83
TC+V +P T++W +DG L ++ + I S S LE+ ++ D G Y C A N
Sbjct: 39 TCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVN 97
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 36/86 (41%)
Query: 11 EKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPT 70
K Q V + F C+ +G P P + W L + + TV TLE+
Sbjct: 390 RKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQ 449
Query: 71 KEDIGVYTCKATNIGGVATCSANLIV 96
+D G Y C A N GG + A+L V
Sbjct: 450 VQDNGTYLCIAANAGGNDSMPAHLHV 475
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 12 KIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTK 71
+ + V + Q C G+P+P + W+K + +T I+T S + L+I N
Sbjct: 119 QFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAE--IST--SGAVLKIFNIQL 174
Query: 72 EDIGVYTCKATNIGGVATCSANLIV 96
ED G+Y C+A NI G A + V
Sbjct: 175 EDEGIYECEAENIRGKDKHQARIYV 199
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 52/141 (36%), Gaps = 10/141 (7%)
Query: 62 STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVL----EKEESGEAPKFTKPLKPVIA 117
L I N D G Y+C ++ + + I L E+ K V A
Sbjct: 66 GNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYA 125
Query: 118 EAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAV 177
TL+ G P P I W R E +P +T VL I +DE +
Sbjct: 126 LMGQNVTLECFALGNPVPDIRW-RKVLEPMPSTAEI-----STSGAVLKIFNIQLEDEGI 179
Query: 178 YSVKAVNTFGRAECRANLVLR 198
Y +A N G+ + +A + ++
Sbjct: 180 YECEAENIRGKDKHQARIYVQ 200
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 62/180 (34%), Gaps = 38/180 (21%)
Query: 319 SFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGL 378
S++W ++ PV +T M + + V+ T+G L I+ V + G
Sbjct: 41 SYRWLLNEFPVFIT---------------MDKRRFVS---QTNG--NLYIANVEASDKGN 80
Query: 379 YSCTAVNPXXXXXXXXXXXXXXXXXSGEAPKFTKP--------LKPVIAEAQSPATLKAT 430
YSC +P + TKP K V A TL+
Sbjct: 81 YSCFVSSPSITKSVFSKFIPLIPIPE----RTTKPYPADIVVQFKDVYALMGQNVTLECF 136
Query: 431 VTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK 490
G P P I W R E +P +T VL I +DE +Y +A + K
Sbjct: 137 ALGNPVPDIRW-RKVLEPMPSTAEI-----STSGAVLKIFNIQLEDEGIYECEAENIRGK 190
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 17/116 (14%)
Query: 26 FTCKVEGHPLPTMTWQKDGTEL---HATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82
F C G+P PT W K+G E H Y + E + P+ D G YTC
Sbjct: 31 FRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPS--DKGNYTCVVE 88
Query: 83 NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSIC 138
N G + +L V+E+ P +P++ +A PA +TV G +C
Sbjct: 89 NEYGSINHTYHLDVVERS----------PHRPIL-QAGLPAN-ASTVVGGDVEFVC 132
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 66/186 (35%), Gaps = 31/186 (16%)
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGK 278
VP +TV G P P +W KNGKE + + ++ L+ + G
Sbjct: 23 VPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGN 82
Query: 279 YEIRVVNEAGEARTSGSVTITV-------------AEAETVM-MDV----RVESHPTASF 320
Y V NE G + + + A A TV+ DV +V S
Sbjct: 83 YTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHI 142
Query: 321 QWFIHSEPVVVTGKPTPLVTWSHDGTP-MKEGKEVTIYQDTDGLCKLAISEVFPENAGLY 379
QW H E P DG P +K K + + L I V E+AG Y
Sbjct: 143 QWIKHVEKNGSKYGP--------DGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEY 194
Query: 380 SCTAVN 385
+C A N
Sbjct: 195 TCLAGN 200
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 73/212 (34%), Gaps = 43/212 (20%)
Query: 333 GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPXXXXXX 392
G P P W +G K+ + Y+ + L V P + G Y+C N
Sbjct: 37 GNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINH 96
Query: 393 XXXXXXXXXXXSGEAPKFTKPLKPVIAEAQSPATLKATVTGR----------PTPSICWY 442
P +P++ +A PA V G P I W
Sbjct: 97 TYHLDVVERS----------PHRPIL-QAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 145
Query: 443 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLI 502
+ E+ NG ++ P G L + +KA+ T TD VL I
Sbjct: 146 KHVEK----NG--SKYGPD-GLPYLKV------------LKAAGVNT---TDKEIEVLYI 183
Query: 503 SKITRDQIGDVTCRAENVAGSVTCTATLSLLP 534
+T + G+ TC A N G +A L++LP
Sbjct: 184 RNVTFEDAGEYTCLAGNSIGISFHSAWLTVLP 215
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 17/87 (19%)
Query: 26 FTCKVEGHPLPTMTW----QKDGTE-----------LHATEHYLITTVESVSTLEIINPT 70
F CKV P + W +K+G++ L A + TT + + L I N T
Sbjct: 130 FVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAG--VNTTDKEIEVLYIRNVT 187
Query: 71 KEDIGVYTCKATNIGGVATCSANLIVL 97
ED G YTC A N G++ SA L VL
Sbjct: 188 FEDAGEYTCLAGNSIGISFHSAWLTVL 214
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 22 QPALFTCKVEGHPLPTMTWQKDGTELHA---TEHYLITTVESVSTLEIINPTKEDIGVYT 78
Q C +G P PTMTW KDG + E Y S L I K D Y
Sbjct: 29 QSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNY--DGSELIIKKVDKSDEAEYI 86
Query: 79 CKATNIGGVATCSANLIVLEK 99
C A N G + +L V K
Sbjct: 87 CIAENKAGEQDATIHLKVFAK 107
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 208 VLEAPTIVRPLQALL---VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNV- 263
++ P VR Q+ + +VTL + G P P + W K+G+ I +D E K +
Sbjct: 7 IVNVPPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFN 66
Query: 264 ---TKLVIKQTTKKTTGKYEIRVVNEAGE 289
++L+IK+ K +Y N+AGE
Sbjct: 67 YDGSELIIKKVDKSDEAEYICIAENKAGE 95
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 333 GKPTPLVTWSHDGTPM-KEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
G P P +TW+ DG P+ +E E + DG +L I +V + Y C A N
Sbjct: 39 GFPEPTMTWTKDGEPIEQEDNEEKYSFNYDG-SELIIKKVDKSDEAEYICIAEN 91
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 25 LFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI 84
FTC G P + G ++ +T+ ++ S L I N ED G+Y C+AT+
Sbjct: 19 FFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA 78
Query: 85 GG 86
G
Sbjct: 79 KG 80
>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human
Myosin Light Chain Kinase
Length = 114
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%)
Query: 29 KVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA 88
KV G T TW K ++ +EH + E+ S L I+ +E G YT N G
Sbjct: 30 KVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSR 89
Query: 89 TCSANLIVLEK 99
NL V++K
Sbjct: 90 QAQVNLTVVDK 100
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 36.6 bits (83), Expect = 0.044, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 26 FTCKVEGHPLPTMTWQKDGTEL---HATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82
F C G+P+PTM W K+G E H Y + +E + P+ D G YTC
Sbjct: 32 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS--DKGNYTCVVE 89
Query: 83 N 83
N
Sbjct: 90 N 90
Score = 36.2 bits (82), Expect = 0.048, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGK 278
VP +TV G P P ++W KNGKE + + ++ L+++ G
Sbjct: 24 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 83
Query: 279 YEIRVVNEAG 288
Y V NE G
Sbjct: 84 YTCVVENEYG 93
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 333 GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
G P P + W +G K+ + Y+ + L + V P + G Y+C N
Sbjct: 38 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 90
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 36.2 bits (82), Expect = 0.050, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 26 FTCKVEGHPLPTMTWQKDGTEL---HATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82
F C G+P+PTM W K+G E H Y + +E + P+ D G YTC
Sbjct: 33 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS--DKGNYTCVVE 90
Query: 83 N 83
N
Sbjct: 91 N 91
Score = 36.2 bits (82), Expect = 0.052, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGK 278
VP +TV G P P ++W KNGKE + + ++ L+++ G
Sbjct: 25 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 84
Query: 279 YEIRVVNEAG 288
Y V NE G
Sbjct: 85 YTCVVENEYG 94
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 333 GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
G P P + W +G K+ + Y+ + L + V P + G Y+C N
Sbjct: 39 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 91
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 36.2 bits (82), Expect = 0.051, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 26 FTCKVEGHPLPTMTWQKDGTEL---HATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82
F C G+P+PTM W K+G E H Y + +E + P+ D G YTC
Sbjct: 28 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS--DKGNYTCVVE 85
Query: 83 N 83
N
Sbjct: 86 N 86
Score = 36.2 bits (82), Expect = 0.052, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGK 278
VP +TV G P P ++W KNGKE + + ++ L+++ G
Sbjct: 20 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 79
Query: 279 YEIRVVNEAG 288
Y V NE G
Sbjct: 80 YTCVVENEYG 89
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 333 GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
G P P + W +G K+ + Y+ + L + V P + G Y+C N
Sbjct: 34 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 86
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 27/164 (16%)
Query: 160 TGECV-LSISEATPQDEAVYSV----------KAVNTFGRA--ECRANLVLRKATTI--- 203
TGE + L I+E TP D+ Y + K V+ G+A E A K I
Sbjct: 55 TGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEK 114
Query: 204 DKPRVLEA-PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IET 259
++ RVL P +V + + + L G P PEV W KN K + D ++
Sbjct: 115 NRARVLGGLPDVVT------IQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKF 168
Query: 260 KDNVTK-LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
+ T I + +GKY + V N+ G + +V++ + E
Sbjct: 169 EAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIPE 212
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 1 MAEVLAPRFIEKIQPVVSHQEQPAL-FTCKVEGHPLPTMTWQKDGTELHATEH 52
+AE R + + VV+ QE AL TC V G P P ++W K+ L T+H
Sbjct: 111 IAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDH 163
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 35.8 bits (81), Expect = 0.060, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 34 PLPTMTWQ-KDGTEL-HATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCS 91
P+ ++ W +GT L HA+ H I+ + TL + D GVYTC TN+ G + S
Sbjct: 33 PMSSVKWLLPNGTVLSHASRHPRISVLND-GTLNFSHVLLSDTGVYTCMVTNVAGNSNAS 91
Query: 92 ANLIVLEKEESG 103
A L V SG
Sbjct: 92 AYLNVSSGPSSG 103
>pdb|2K1M|A Chain A, 3d Nmr Structure Of Domain Cc0 Of Cardiac Myosin Binding
Protein C (Mybpc)
Length = 95
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 410 FTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSI 469
F+K + V A SPA +A T R + W RG +I N + + T L++
Sbjct: 11 FSKKPRSVEVAAGSPAVFEAE-TERAGVKVRWQRGGSDISASNKYGLATEGT--RHTLTV 67
Query: 470 SEATPQDEAVYSVKASSTETKI 491
E P D+ Y+V A S++ K
Sbjct: 68 REVGPADQGSYAVIAGSSKVKF 89
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 34 PLPTMTWQK-DGTEL-HATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCS 91
P+ ++ W +GT L HA+ H I+ + TL + D GVYTC TN+ G + S
Sbjct: 378 PMSSVKWLLPNGTVLSHASRHPRISVLND-GTLNFSHVLLSDTGVYTCMVTNVAGNSNAS 436
Query: 92 ANLIV 96
A L V
Sbjct: 437 AYLNV 441
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 79/374 (21%), Positives = 136/374 (36%), Gaps = 71/374 (18%)
Query: 26 FTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG 85
FTC+ E T W + L + ++ TL + N T+ D Y C+ N
Sbjct: 131 FTCEPETQDA-TYLWWVNNQSLPVSPRLQLSNGNR--TLTLFNVTRNDTASYKCETQN-- 185
Query: 86 GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEE 145
V+ ++ ++L +AP + PL ++ L P W+
Sbjct: 186 PVSARRSDSVILNVLYGPDAPTIS-PLNTSYRSGEN-LNLSCHAASNPPAQYSWFV---- 239
Query: 146 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDK 205
NG F +T E L I T VN G C+A+ T +++
Sbjct: 240 ----NG---TFQQSTQE--LFIPNIT-----------VNNSGSYTCQAH---NSDTGLNR 276
Query: 206 PRVLEAPTIVRPLQALLVPKDST-VTLEAEYTGTPTPEVK-----WFKNGKEI-VSKDIE 258
V P + + +S V E T PE++ W+ N + + VS ++
Sbjct: 277 TTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQ 336
Query: 259 TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRV-ESHPT 317
++ L + T+ G YE + NE ++V ++ V+++V PT
Sbjct: 337 LSNDNRTLTLLSVTRNDVGPYECGIQNE-----------LSVDHSDPVILNVLYGPDDPT 385
Query: 318 ASFQWFIHSEPVVVT------GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEV 371
S + + V ++ P +W DG + +E L IS +
Sbjct: 386 ISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQE------------LFISNI 433
Query: 372 FPENAGLYSCTAVN 385
+N+GLY+C A N
Sbjct: 434 TEKNSGLYTCQANN 447
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 29/148 (19%)
Query: 245 WFKNGKEI-VSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA 303
W+ NG+ + VS ++ + L + T+ Y + N R S VT+ V
Sbjct: 500 WWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANR-SDPVTLDVLYG 558
Query: 304 ETVMMDVRVESHPTASF------QWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIY 357
D + S P +S+ HS P+P +W +G P + +
Sbjct: 559 P----DTPIISPPDSSYLSGANLNLSCHS-----ASNPSPQYSWRINGIPQQHTQ----- 604
Query: 358 QDTDGLCKLAISEVFPENAGLYSCTAVN 385
L I+++ P N G Y+C N
Sbjct: 605 -------VLFIAKITPNNNGTYACFVSN 625
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 329 VVVTGKPTPLVTWSHDGTPMKEGK--EVTIYQD---TDGLCKLAISEVFPENAGLYSCTA 383
VV G P P + W H+G P++E K V YQ+ ++G C L ++ N G Y+ A
Sbjct: 27 FVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEG-C-LLFNKPTHYNNGNYTLIA 84
Query: 384 VNP 386
NP
Sbjct: 85 KNP 87
>pdb|2CPC|A Chain A, Solution Structure Of Rsgi Ruh-030, An Ig Like Domain From
Human Cdna
Length = 113
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 239 PTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGS 295
P EV+W K+G+E+V ++ +D V +LV+ + +G+Y + +E S S
Sbjct: 40 PWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDE------SAS 93
Query: 296 VTITVAE 302
T+TV E
Sbjct: 94 FTVTVTE 100
>pdb|3O8X|C Chain C, Recognition Of Glycolipid Antigen By Inkt Cell Tcr
pdb|3O9W|C Chain C, Recognition Of A Glycolipid Antigen By The Inkt Cell Tcr
pdb|3QUX|C Chain C, Structure Of The Mouse Cd1d-Alpha-C-Galcer-Inkt Tcr
Complex
pdb|3QUY|C Chain C, Structure Of The Mouse Cd1d-Bnnh-Gsl-1'-Inkt Tcr Complex
pdb|3QUZ|C Chain C, Structure Of The Mouse Cd1d-Nu-Alpha-Galcer-Inkt Tcr
Complex
pdb|3RZC|C Chain C, Structure Of The Self-Antigen Igb3 Bound To Mouse Cd1d And
In Complex With The Inkt Tcr
pdb|3TA3|C Chain C, Structure Of The Mouse Cd1d-Glc-Dag-S2-Inkt Tcr Complex
pdb|3TVM|C Chain C, Structure Of The Mouse Cd1d-Smc124-Inkt Tcr Complex
pdb|3TVM|G Chain G, Structure Of The Mouse Cd1d-Smc124-Inkt Tcr Complex
pdb|3RTQ|C Chain C, Structure Of The Mouse Cd1d-Hs44-Inkt Tcr Complex
Length = 209
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 11/74 (14%)
Query: 219 QALLVPKDSTVTLEAEYTGTPTPEVKWFKN--GKEIVSKDIETKDNVTKLVIKQTTKKTT 276
Q+L+V + L+ Y+ TP ++WFK GK +VS +++ Q K +
Sbjct: 10 QSLVVRQGENCVLQCNYSVTPDNHLRWFKQDTGKGLVS---------LTVLVDQKDKTSN 60
Query: 277 GKYEIRVVNEAGEA 290
G+Y + +A +
Sbjct: 61 GRYSATLDKDAKHS 74
>pdb|3HE6|C Chain C, Crystal Structure Of Mouse Cd1d-Alpha-Galactosylceramide
With Mouse Valpha14-Vbeta8.2 Nkt Tcr
pdb|3HE7|C Chain C, Crystal Structure Of Mouse Cd1d-Alpha-Galactosylceramide
With Mouse Valpha14-Vbeta7 Nkt Tcr
pdb|3ARB|C Chain C, Ternary Crystal Structure Of The Nkt
Tcr-Cd1d-Alpha-Galactosylceramide Analogue-Och
pdb|3ARD|C Chain C, Ternary Crystal Structure Of The Mouse Nkt
Tcr-Cd1d-3'deoxy-Alpha- Galactosylceramide
pdb|3ARE|C Chain C, Ternary Crystal Structure Of The Mouse Nkt
Tcr-Cd1d-4'deoxy-Alpha- Galactosylceramide
pdb|3ARF|C Chain C, Ternary Crystal Structure Of The Mouse Nkt Tcr-Cd1d-C20:2
pdb|3ARG|C Chain C, Ternary Crystal Structure Of The Mouse Nkt Tcr-Cd1d-Alpha-
Glucosylceramide(C20:2)
pdb|3SCM|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Isoglobotrihexosylceramide
pdb|3SDA|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
pdb|3SDC|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Globotrihexosylceramide
pdb|3SDD|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Beta-Lactosylceramide
pdb|3TN0|C Chain C, Structure Of Mouse Va14vb8.2nkt Tcr-Mouse
Cd1d-A-C-Galactosylceramide Complex
pdb|3QI9|C Chain C, Crystal Structure Of Mouse Cd1d-Alpha-Phosphotidylinositol
With Mouse Valpha14-Vbeta6 2a3-D Nkt Tcr
Length = 207
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 11/74 (14%)
Query: 219 QALLVPKDSTVTLEAEYTGTPTPEVKWFKN--GKEIVSKDIETKDNVTKLVIKQTTKKTT 276
Q+L+V + L+ Y+ TP ++WFK GK +VS +++ Q K +
Sbjct: 8 QSLVVRQGENSVLQCNYSVTPDNHLRWFKQDTGKGLVS---------LTVLVDQKDKTSN 58
Query: 277 GKYEIRVVNEAGEA 290
G+Y + +A +
Sbjct: 59 GRYSATLDKDAKHS 72
>pdb|3TO4|C Chain C, Structure Of Mouse
Valpha14vbeta2-Mousecd1d-Alpha-Galactosylceramide
Length = 212
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 219 QALLVPKDSTVTLEAEYTGTPTPEVKWFKN--GKEIVSKDIETKDNVTKLVIKQTTKKTT 276
Q+L+V + L+ Y+ TP ++WFK GK +VS +++ Q K +
Sbjct: 8 QSLVVRQGENSVLQCNYSVTPDNHLRWFKQDTGKGLVS---------LTVLVDQKDKTSN 58
Query: 277 GKYEIRVVNEA 287
G+Y + +A
Sbjct: 59 GRYSATLDKDA 69
>pdb|1AQD|B Chain B, Hla-Dr1 (Dra, Drb1 0101) Human Class Ii Histocompatibility
Protein (Extracellular Domain) Complexed With Endogenous
Peptide
pdb|1AQD|E Chain E, Hla-Dr1 (Dra, Drb1 0101) Human Class Ii Histocompatibility
Protein (Extracellular Domain) Complexed With Endogenous
Peptide
pdb|1AQD|H Chain H, Hla-Dr1 (Dra, Drb1 0101) Human Class Ii Histocompatibility
Protein (Extracellular Domain) Complexed With Endogenous
Peptide
pdb|1AQD|K Chain K, Hla-Dr1 (Dra, Drb1 0101) Human Class Ii Histocompatibility
Protein (Extracellular Domain) Complexed With Endogenous
Peptide
Length = 198
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 33/115 (28%)
Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAE---------------------CRANLVLRKAT 201
C+ + E+ D V +AV GR + CR N + ++
Sbjct: 30 CIYNQEESVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESF 89
Query: 202 TIDK---PRVLEAPTIVRPLQA--LLVPKDSTVTLEAEYTGTPTPEVKWFKNGKE 251
T+ + P+V P+ +PLQ LLV ++ Y G+ EV+WF+NG+E
Sbjct: 90 TVQRRVEPKVTVYPSKTQPLQHHNLLV-----CSVSGFYPGSI--EVRWFRNGQE 137
>pdb|3PDO|B Chain B, Crystal Structure Of Hla-Dr1 With Clip102-120
pdb|3PGC|B Chain B, Crystal Structure Of Hla-Dr1 With Clip106-120, Flipped
Peptide Orientation
pdb|3PGC|E Chain E, Crystal Structure Of Hla-Dr1 With Clip106-120, Flipped
Peptide Orientation
pdb|3PGD|B Chain B, Crystal Structure Of Hla-Dr1 With Clip106-120, Canonical
Peptide Orientation
pdb|3PGD|E Chain E, Crystal Structure Of Hla-Dr1 With Clip106-120, Canonical
Peptide Orientation
pdb|4AEN|B Chain B, Hla-Dr1 With Covalently Linked Clip106-120 In Reversed
Orientation
Length = 199
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 33/115 (28%)
Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAE---------------------CRANLVLRKAT 201
C+ + E+ D V +AV GR + CR N + ++
Sbjct: 31 CIYNQEESVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESF 90
Query: 202 TIDK---PRVLEAPTIVRPLQA--LLVPKDSTVTLEAEYTGTPTPEVKWFKNGKE 251
T+ + P+V P+ +PLQ LLV ++ Y G+ EV+WF+NG+E
Sbjct: 91 TVQRRVEPKVTVYPSKTQPLQHHNLLV-----CSVSGFYPGSI--EVRWFRNGQE 138
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 33.1 bits (74), Expect = 0.42, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 23/74 (31%)
Query: 28 CKVEGHPLPTMTWQKDG------------------TELHATEHYLITTVESVSTLEIINP 69
C+ G P+P + W +G +HAT H + ST+ I
Sbjct: 43 CEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQ-----HAASTISIDTL 97
Query: 70 TKEDIGVYTCKATN 83
+ED G Y C+A+N
Sbjct: 98 VEEDTGTYECRASN 111
Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 16/97 (16%)
Query: 228 TVTLEAEYTGTPTPEVKWFKNGK---EIVSK--DIETKDNV-----------TKLVIKQT 271
+V L E G+P PE++W+ G+ +I S+ D D V + + I
Sbjct: 38 SVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTL 97
Query: 272 TKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMM 308
++ TG YE R N+ + + + A+ V++
Sbjct: 98 VEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQAVVL 134
>pdb|3L6F|B Chain B, Structure Of Mhc Class Ii Molecule Hla-Dr1 Complexed With
Phosphopeptide Mart-1
pdb|3S4S|B Chain B, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
pdb|3S4S|E Chain E, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
pdb|3S5L|B Chain B, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
pdb|3S5L|E Chain E, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
Length = 193
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 33/115 (28%)
Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAE---------------------CRANLVLRKAT 201
C+ + E+ D V +AV GR + CR N + ++
Sbjct: 31 CIYNQEESVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESF 90
Query: 202 TIDK---PRVLEAPTIVRPLQA--LLVPKDSTVTLEAEYTGTPTPEVKWFKNGKE 251
T+ + P+V P+ +PLQ LLV ++ Y G+ EV+WF+NG+E
Sbjct: 91 TVQRRVEPKVTVYPSKTQPLQHHNLLV-----CSVSGFYPGSI--EVRWFRNGQE 138
>pdb|4FQX|B Chain B, Crystal Structure Of Hla-Dm Bound To Hla-Dr1
pdb|4GBX|B Chain B, Crystal Structure Of An Immune Complex At Ph 6.5
Length = 208
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 16/75 (21%)
Query: 182 AVNTFGRAECRANLVLRKATTIDK---PRVLEAPTIVRPLQA--LLVPKDSTVTLEAEYT 236
AV+T+ CR N + ++ T+ + P+V P+ +PLQ LLV ++ Y
Sbjct: 80 AVDTY----CRHNYGVGESFTVQRRVEPKVTVYPSKTQPLQHHNLLV-----CSVSGFYP 130
Query: 237 GTPTPEVKWFKNGKE 251
G+ EV+WF+NG+E
Sbjct: 131 GSI--EVRWFRNGQE 143
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 23/74 (31%)
Query: 28 CKVEGHPLPTMTWQKDG------------------TELHATEHYLITTVESVSTLEIINP 69
C+ G P+P + W +G +HAT H + ST+ I
Sbjct: 43 CEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHATYHQ-----HAASTISIDTL 97
Query: 70 TKEDIGVYTCKATN 83
+ED G Y C+A+N
Sbjct: 98 VEEDTGTYECRASN 111
Score = 29.3 bits (64), Expect = 5.5, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 16/97 (16%)
Query: 228 TVTLEAEYTGTPTPEVKWFKNGK---EIVSK--DIETKDNV-----------TKLVIKQT 271
+V L E G+P PE++W+ G+ +I S+ D D V + + I
Sbjct: 38 SVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHATYHQHAASTISIDTL 97
Query: 272 TKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMM 308
++ TG YE R N+ + + + A+ V++
Sbjct: 98 VEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQAVVL 134
>pdb|4AH2|B Chain B, Hla-Dr1 With Covalently Linked Clip106-120 In Canonical
Orientation
Length = 229
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 33/115 (28%)
Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAE---------------------CRANLVLRKAT 201
C+ + E+ D V +AV GR + CR N + ++
Sbjct: 61 CIYNQEESVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESF 120
Query: 202 TIDK---PRVLEAPTIVRPLQA--LLVPKDSTVTLEAEYTGTPTPEVKWFKNGKE 251
T+ + P+V P+ +PLQ LLV ++ Y G+ EV+WF+NG+E
Sbjct: 121 TVQRRVEPKVTVYPSKTQPLQHHNLLV-----CSVSGFYPGSI--EVRWFRNGQE 168
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 20/116 (17%)
Query: 4 VLAPRFIEKIQP------VVSHQEQPALF--------TCKVEGHPLPTM-TWQKDGT--- 45
VL+ +FI K++P VVS + L TC ++ TW+++ +
Sbjct: 195 VLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTK 254
Query: 46 --ELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
E + + H+ E +TL I + D GV+ C A N G A + L V++K
Sbjct: 255 LQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDK 310
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 229 VTLEAEYTGTPTPEVKWFKNGKEIVSK--DIETKDNVTKLVIKQTTKKTTGKYEIRVVNE 286
+ L + G P P+V W K G + + + T D T ++Q + +G+YE+ V E
Sbjct: 42 LNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIE 101
Query: 287 AGEARTSGSVTITVAE 302
+ + ++ I V E
Sbjct: 102 --NMKDTATIRIRVVE 115
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 20/116 (17%)
Query: 4 VLAPRFIEKIQP------VVSHQEQPALF--------TCKVEGHPLPTM-TWQKDGT--- 45
VL+ +FI K++P VVS + L TC ++ TW+++ +
Sbjct: 170 VLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTK 229
Query: 46 --ELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
E + + H+ E +TL I + D GV+ C A N G A + L V++K
Sbjct: 230 LQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDK 285
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 32 GHPLPTMTWQK-DGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATC 90
G + ++ W +GT + + + +V TL N T +D G YTC TN G T
Sbjct: 337 GTSMTSVNWLTPNGTLMTHGSYRVRISVLHDGTLNFTNVTVQDTGQYTCMVTNSAGNTTA 396
Query: 91 SANLIV 96
SA L V
Sbjct: 397 SATLNV 402
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 12/84 (14%)
Query: 453 GHTMEFNPTTGECVLSISEATPQD----EAVYSVKASSTETKIMTDGNRSVLLISKITRD 508
G E TG + S++ TP Y V+ S ++ DG L + +T
Sbjct: 327 GMAAELKCRTGTSMTSVNWLTPNGTLMTHGSYRVRIS-----VLHDG---TLNFTNVTVQ 378
Query: 509 QIGDVTCRAENVAGSVTCTATLSL 532
G TC N AG+ T +ATL++
Sbjct: 379 DTGQYTCMVTNSAGNTTASATLNV 402
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 49/130 (37%), Gaps = 18/130 (13%)
Query: 125 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
L TG P W++ +EI NG+T E L + +D Y + N
Sbjct: 38 LCCRATGHPFVQYQWFKMNKEI--PNGNTSE---------LIFNAVHVKDAGFYVCRVNN 86
Query: 185 TFGRAECR------ANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT 238
F + ++ ++D + V P L+P ST+ L+ G+
Sbjct: 87 NFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMP-GSTLVLQCVAVGS 145
Query: 239 PTPEVKWFKN 248
P P +WFKN
Sbjct: 146 PIPHYQWFKN 155
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 21/79 (26%)
Query: 222 LVPKDSTVTLEAEY---------------TGTPTPEVKWFKNGKEIVSKDIETKDNVTKL 266
LVP+ S +T+ E TG P + +WFK KEI N ++L
Sbjct: 14 LVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEI------PNGNTSEL 67
Query: 267 VIKQTTKKTTGKYEIRVVN 285
+ K G Y RV N
Sbjct: 68 IFNAVHVKDAGFYVCRVNN 86
>pdb|2V5Y|A Chain A, Crystal Structure Of The Receptor Protein Tyrosine
Phosphatase Mu Ectodomain
Length = 731
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHAT---EHYLITTVESVST 63
P F+ +IQ V + Q A F C G + G ++ E + ++ +++
Sbjct: 166 PHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIAS 224
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCS-ANLIVLE 98
++N TK D G Y C GGV + A L+V E
Sbjct: 225 FNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKE 260
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 70/196 (35%), Gaps = 27/196 (13%)
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPA 123
L ++ +ED G Y C N S L V E T P I+ Q
Sbjct: 83 LWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFEN---------TDAFLPFISYPQILT 133
Query: 124 TLKATVTGRPTPS----------ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQ 173
+ V P S I WY K+ +L D + +F G L + + +
Sbjct: 134 LSTSGVLVCPDLSEFTRDKTDVKIQWY--KDSLLLDKDNE-KFLSVRGTTHLLVHDVALE 190
Query: 174 DEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEA 233
D Y + V TF + N+ I K + P I+ PL+ + S +T+
Sbjct: 191 DAGYY--RCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPC 248
Query: 234 EY---TGTPTPEVKWF 246
+ TGTP + W+
Sbjct: 249 KVFLGTGTPLTTMLWW 264
>pdb|2C9A|A Chain A, Crystal Structure Of The Mam-ig Module Of Receptor Protein
Tyrosine Phosphatase Mu
Length = 259
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHAT---EHYLITTVESVST 63
P F+ +IQ V + Q A F C G + G ++ E + ++ +++
Sbjct: 166 PHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIAS 224
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCS-ANLIV 96
++N TK D G Y C GGV + A L+V
Sbjct: 225 FNVVNTTKRDAGKYRCXIRTEGGVGISNYAELVV 258
>pdb|4FP4|A Chain A, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
pdb|4FP4|B Chain B, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
Length = 285
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 202 TIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD 256
+I PR+LEA IV L + + +D + + G TP + +G+ IV+ D
Sbjct: 64 SIMDPRILEAAAIVELLHVVSLLQDDVMDQHDQRRGIKTPRA-MYGDGRAIVASD 117
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 35 LPTMTW-QKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSAN 93
L +++W +GT + + + V S TL N T +D G+YTC +N G T SA
Sbjct: 369 LTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASAT 428
Query: 94 LIV 96
L V
Sbjct: 429 LNV 431
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 239 PTPEVKWFKNGKEIVSKDIETKDNVTKL-------VIKQTTKKTTGKYEIRVVNEAGEA 290
P VKW K+G I+S D+E NVT L V++ K TG I N +G+
Sbjct: 151 PIVSVKWNKDGTHIISMDVE---NVTILWNVISGTVMQHFELKETGGSSINAENHSGDG 206
>pdb|3SKJ|L Chain L, Structural And Functional Characterization Of An Agonistic
Anti-Human Epha2 Monoclonal Antibody
pdb|3SKJ|M Chain M, Structural And Functional Characterization Of An Agonistic
Anti-Human Epha2 Monoclonal Antibody
Length = 214
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 29/122 (23%)
Query: 116 IAEAQSPATLKA------TVTGRPTPSI----CWYRGKEEILP-------DNGHTMEFNP 158
I QSP++L A T+T R + SI WY+ K P N HT +
Sbjct: 2 IQMTQSPSSLSASVGDRVTITCRASQSISTWLAWYQQKPGKAPKLLIYKASNLHTGVPSR 61
Query: 159 TTG-----ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPT 213
+G E L+IS P D A Y + N++ R + T ++ R + AP+
Sbjct: 62 FSGSGSGTEFSLTISGLQPDDFATYYCQQYNSYSR-------TFGQGTKVEIKRTVAAPS 114
Query: 214 IV 215
+
Sbjct: 115 VF 116
>pdb|1SEB|B Chain B, Complex Of The Human Mhc Class Ii Glycoprotein Hla-Dr1 And
The Bacterial Superantigen Seb
pdb|1SEB|F Chain F, Complex Of The Human Mhc Class Ii Glycoprotein Hla-Dr1 And
The Bacterial Superantigen Seb
pdb|1FYT|B Chain B, Crystal Structure Of A Complex Of A Human AlphaBETA-T Cell
Receptor, Influenza Ha Antigen Peptide, And Mhc Class Ii
Molecule, Hla-Dr1
Length = 192
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 16/75 (21%)
Query: 182 AVNTFGRAECRANLVLRKATTIDK---PRVLEAPTIVRPLQ--ALLVPKDSTVTLEAEYT 236
AV+T+ CR N + ++ T+ + P+V P+ +PLQ LLV ++ Y
Sbjct: 74 AVDTY----CRHNYGVGESFTVQRRVEPKVTVYPSKTQPLQHHNLLV-----CSVSGFYP 124
Query: 237 GTPTPEVKWFKNGKE 251
G+ EV+WF+NG+E
Sbjct: 125 GSI--EVRWFRNGQE 137
>pdb|1HXY|B Chain B, Crystal Structure Of Staphylococcal Enterotoxin H In
Complex With Human Mhc Class Ii
pdb|1KLG|B Chain B, Crystal Structure Of Hla-Dr1TPI(23-37, Thr28-->ile Mutant)
Complexed With Staphylococcal Enterotoxin C3 Variant 3b2
(Sec3-3b2)
pdb|1KLU|B Chain B, Crystal Structure Of Hla-Dr1TPI(23-37) Complexed With
Staphylococcal Enterotoxin C3 Variant 3b2 (Sec3-3b2)
pdb|1LO5|B Chain B, Crystal Structure Of The D227a Variant Of Staphylococcal
Enterotoxin A In Complex With Human Mhc Class Ii
pdb|1JWM|B Chain B, Crystal Structure Of The Complex Of The Mhc Class Ii
Molecule Hla-Dr1(Ha Peptide 306-318) With The
Superantigen Sec3
pdb|1JWS|B Chain B, Crystal Structure Of The Complex Of The Mhc Class Ii
Molecule Hla-Dr1 (Ha Peptide 306-318) With The
Superantigen Sec3 Variant 3b1
pdb|1JWU|B Chain B, Crystal Structure Of The Complex Of The Mhc Class Ii
Molecule Hla-Dr1 (Ha Peptide 306-318) With The
Superantigen Sec3 Variant 3b2
pdb|1PYW|B Chain B, Human Class Ii Mhc Protein Hla-Dr1 Bound To A Designed
Peptide Related To Influenza Virus Hemagglutinin,
Fvkqna(Maa)al, In Complex With Staphylococcal
Enterotoxin C3 Variant 3b2 (Sec3-3b2)
pdb|1R5I|B Chain B, Crystal Structure Of The Mam-Mhc Complex
pdb|1R5I|F Chain F, Crystal Structure Of The Mam-Mhc Complex
pdb|1SJE|B Chain B, Hla-Dr1 Complexed With A 16 Residue Hiv Capsid Peptide
Bound In A Hairpin Conformation
pdb|1SJH|B Chain B, Hla-Dr1 Complexed With A 13 Residue Hiv Capsid Peptide
pdb|1T5W|B Chain B, Hla-Dr1 In Complex With A Synthetic Peptide
(Aaysdqatplllspr)
pdb|1T5W|E Chain E, Hla-Dr1 In Complex With A Synthetic Peptide
(Aaysdqatplllspr)
pdb|1T5X|B Chain B, Hla-Dr1 In Complex With A Synthetic Peptide
(Aaysdqatplllspr) And The Superantigen Sec3-3b2
pdb|2G9H|B Chain B, Crystal Structure Of Staphylococcal Enterotoxin I (Sei) In
Complex With A Human Mhc Class Ii Molecule
pdb|2OJE|B Chain B, Mycoplasma Arthritidis-Derived Mitogen Complexed With
Class Ii Mhc Molecule Hla-Dr1HA COMPLEX IN THE PRESENCE
OF EDTA
pdb|2OJE|F Chain F, Mycoplasma Arthritidis-Derived Mitogen Complexed With
Class Ii Mhc Molecule Hla-Dr1HA COMPLEX IN THE PRESENCE
OF EDTA
pdb|2IAM|B Chain B, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|B Chain B, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|G Chain G, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|L Chain L, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|Q Chain Q, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2ICW|B Chain B, Crystal Structure Of A Complete Ternary Complex Between
Tcr, Superantigen, And Peptide-Mhc Class Ii Molecule
pdb|2ICW|E Chain E, Crystal Structure Of A Complete Ternary Complex Between
Tcr, Superantigen, And Peptide-Mhc Class Ii Molecule
pdb|2IPK|B Chain B, Crystal Structure Of The Mhc Class Ii Molecule Hla-Dr1 In
Complex With The Fluorogenic Peptide, Acpkxvkqntlklat
(X3-
[5-(Dimethylamino)-1,3-Dioxo-1,
3-Dihydro-2h-Isoindol-2-Yl]- L-Alanine) And The
Superantigen, Sec3 Variant 3b2
pdb|2XN9|E Chain E, Crystal Structure Of The Ternary Complex Between Human T
Cell Receptor, Staphylococcal Enterotoxin H And Human
Major Histocompatibility Complex Class Ii
pdb|3QXA|B Chain B, Hla-Dr1 Bound With Clip Peptide
pdb|3QXA|E Chain E, Hla-Dr1 Bound With Clip Peptide
pdb|3QXD|B Chain B, F54c Hla-Dr1 Bound With Clip Peptide
pdb|3QXD|E Chain E, F54c Hla-Dr1 Bound With Clip Peptide
pdb|4E41|B Chain B, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
pdb|4E41|G Chain G, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
Length = 190
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 16/75 (21%)
Query: 182 AVNTFGRAECRANLVLRKATTIDK---PRVLEAPTIVRPLQ--ALLVPKDSTVTLEAEYT 236
AV+T+ CR N + ++ T+ + P+V P+ +PLQ LLV ++ Y
Sbjct: 74 AVDTY----CRHNYGVGESFTVQRRVEPKVTVYPSKTQPLQHHNLLV-----CSVSGFYP 124
Query: 237 GTPTPEVKWFKNGKE 251
G+ EV+WF+NG+E
Sbjct: 125 GSI--EVRWFRNGQE 137
>pdb|3EOY|G Chain G, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|H Chain H, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|I Chain I, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|J Chain J, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|K Chain K, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|L Chain L, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
Length = 104
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 20 QEQPALFTCKVEGHPLPTMTW---QKDGTELHATEHYLITTVESVST-----LEIINPTK 71
+ P +C G P + W Q D T L + + + E T + + T+
Sbjct: 17 ENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTR 76
Query: 72 EDIGVYTCKATNIGG--VATCSANLIVL 97
ED G YTC + GG LIVL
Sbjct: 77 EDTGTYTCMVSEEGGNSYGEVKVKLIVL 104
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 223 VPKDSTVTLEAEYTGTPTPEVKW-FKNGK--EIVSKD----IETKDNVTKL----VIKQT 271
+P+++ V L Y+G +P V+W F G +V + +D VT L K
Sbjct: 15 IPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSV 74
Query: 272 TKKTTGKYEIRVVNEAGEA 290
T++ TG Y V E G +
Sbjct: 75 TREDTGTYTCMVSEEGGNS 93
>pdb|2Q86|A Chain A, Structure Of The Mouse Invariant Nkt Cell Receptor
Valpha14
pdb|2Q86|C Chain C, Structure Of The Mouse Invariant Nkt Cell Receptor
Valpha14
Length = 229
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 11/74 (14%)
Query: 219 QALLVPKDSTVTLEAEYTGTPTPEVKWFKN--GKEIVSKDIETKDNVTKLVIKQTTKKTT 276
Q+L+V + L+ Y+ TP ++W+K GK +V + +++ Q K +
Sbjct: 9 QSLVVRQGENCVLQCNYSVTPDNHLRWYKQDTGKGLV---------LLTVLVDQKDKTSN 59
Query: 277 GKYEIRVVNEAGEA 290
G+Y + +A +
Sbjct: 60 GRYSATLDKDAKHS 73
>pdb|1DLH|B Chain B, Crystal Structure Of The Human Class Ii Mhc Protein
Hla-dr1 Complexed With An Influenza Virus Peptide
pdb|1DLH|E Chain E, Crystal Structure Of The Human Class Ii Mhc Protein
Hla-dr1 Complexed With An Influenza Virus Peptide
pdb|1KG0|B Chain B, Structure Of The Epstein-Barr Virus Gp42 Protein Bound To
The Mhc Class Ii Receptor Hla-Dr1
Length = 188
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 16/75 (21%)
Query: 182 AVNTFGRAECRANLVLRKATTIDK---PRVLEAPTIVRPLQ--ALLVPKDSTVTLEAEYT 236
AV+T+ CR N + ++ T+ + P+V P+ +PLQ LLV ++ Y
Sbjct: 72 AVDTY----CRHNYGVGESFTVQRRVEPKVTVYPSKTQPLQHHNLLV-----CSVSGFYP 122
Query: 237 GTPTPEVKWFKNGKE 251
G+ EV+WF+NG+E
Sbjct: 123 GSI--EVRWFRNGQE 135
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 12/132 (9%)
Query: 22 QPALFTCKVEGHPL-PTMTWQKDGTELHATEHYLITTV---ESVSTLEIINPTKEDIGVY 77
+ F C+V G ++W E + I+ V + STL I N +D G+Y
Sbjct: 18 ESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIY 77
Query: 78 TCKATNIGGVAT-CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPS 136
C T G + + N+ + +K AP P + A + V P+
Sbjct: 78 KCVVTAEDGTQSEATVNVKIFQKLMFKNAP------TPQEFKEGEDAVIVCDVVSSLPPT 131
Query: 137 ICW-YRGKEEIL 147
I W ++G++ IL
Sbjct: 132 IIWKHKGRDVIL 143
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 285 NEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHD 344
N+ G A S V + V+ +V + VE H W I P V G+P P + W +
Sbjct: 234 NDVGRAEVS--VQVNVSFPASVQLHTAVEMH-----HWCI---PFSVDGQPAPSLRWLFN 283
Query: 345 GTPMKE 350
G+ + E
Sbjct: 284 GSVLNE 289
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 30 VEGHPLPTMTWQKDGTELHATEHYLITTVESVST-------LEIINPTKEDIGVYTCKAT 82
V+G P P++ W +G+ L+ T +E + L + PT + G YT A
Sbjct: 270 VDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA 329
Query: 83 NIGGVATCS 91
N G A+ S
Sbjct: 330 NPFGQASAS 338
>pdb|1WWB|X Chain X, Ligand Binding Domain Of Human Trkb Receptor
Length = 103
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 316 PTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEV 354
PT+ W I P V G P P + W ++G + E K +
Sbjct: 13 PTSDHHWCI---PFTVKGNPKPALQWFYNGAILNESKYI 48
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 15/64 (23%)
Query: 30 VEGHPLPTMTWQKDG----------TELHATEHYLITTVESVSTLEIINPTKEDIGVYTC 79
V+G+P P + W +G T++H T H E L++ NPT + G YT
Sbjct: 25 VKGNPKPALQWFYNGAILNESKYICTKIHVTNH-----TEYHGCLQLDNPTHMNNGDYTL 79
Query: 80 KATN 83
A N
Sbjct: 80 IAKN 83
Score = 28.9 bits (63), Expect = 7.7, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 237 GTPTPEVKWFKNGKEI-VSKDIETKDNVTK-------LVIKQTTKKTTGKYEIRVVNEAG 288
G P P ++WF NG + SK I TK +VT L + T G Y + NE G
Sbjct: 27 GNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYG 86
Query: 289 E 289
+
Sbjct: 87 K 87
>pdb|1E8O|B Chain B, Core Of The Alu Domain Of The Mammalian Srp
pdb|1E8O|D Chain D, Core Of The Alu Domain Of The Mammalian Srp
pdb|1E8S|B Chain B, Alu Domain Of The Mammalian Srp (Potential Alu
Retroposition Intermediate)
pdb|1RY1|D Chain D, Structure Of The Signal Recognition Particle Interacting
With The Elongation-Arrested Ribosome
Length = 106
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 126 KATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNT 185
K +G ++ Y G+ + +P G F P +C+L ++ + V S K VN
Sbjct: 18 KCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRATDGKKKISTVVSSKEVNK 77
Query: 186 FGRAE---CRANL 195
F A RAN+
Sbjct: 78 FQMAYSNLLRANM 90
>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|Y Chain Y, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|U Chain U, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|W Chain W, Structure Of A Class Iii Rtk Signaling Assembly
Length = 290
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 48 HATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
H + H E TL I + +D GV+ C A N G A + L V+EK
Sbjct: 238 HNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEK 289
>pdb|1WWA|X Chain X, Ngf Binding Domain Of Human Trka Receptor
pdb|1WWA|Y Chain Y, Ngf Binding Domain Of Human Trka Receptor
Length = 109
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 30 VEGHPLPTMTWQKDGTELHATEHYLITTVESVST-------LEIINPTKEDIGVYTCKAT 82
V+G P P++ W +G+ L+ T +E + L + PT + G YT A
Sbjct: 28 VDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA 87
Query: 83 NIGGVATCS 91
N G A+ S
Sbjct: 88 NPFGQASAS 96
>pdb|2FSE|B Chain B, Crystallographic Structure Of A Rheumatoid Arthritis Mhc
Susceptibility Allele, Hla-Dr1 (Drb10101), Complexed
With The Immunodominant Determinant Of Human Type Ii
Collagen
pdb|2FSE|D Chain D, Crystallographic Structure Of A Rheumatoid Arthritis Mhc
Susceptibility Allele, Hla-Dr1 (Drb10101), Complexed
With The Immunodominant Determinant Of Human Type Ii
Collagen
Length = 187
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 16/75 (21%)
Query: 182 AVNTFGRAECRANLVLRKATTIDK---PRVLEAPTIVRPLQ--ALLVPKDSTVTLEAEYT 236
AV+T+ CR N + ++ T+ + P V PT +PLQ LLV ++ Y
Sbjct: 71 AVDTY----CRHNYGVGESFTVQRRVEPTVTVYPTKTQPLQHHNLLV-----CSVSDFYP 121
Query: 237 GTPTPEVKWFKNGKE 251
G EV+WF+NGKE
Sbjct: 122 GNI--EVRWFRNGKE 134
>pdb|1HCF|X Chain X, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
pdb|1HCF|Y Chain Y, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
Length = 101
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 316 PTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEV 354
PT+ W I P V G P P + W ++G + E K +
Sbjct: 13 PTSDHHWCI---PFTVKGNPKPALQWFYNGAILNESKYI 48
Score = 29.6 bits (65), Expect = 4.3, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 15/64 (23%)
Query: 30 VEGHPLPTMTWQKDG----------TELHATEHYLITTVESVSTLEIINPTKEDIGVYTC 79
V+G+P P + W +G T++H T H E L++ NPT + G YT
Sbjct: 25 VKGNPKPALQWFYNGAILNESKYICTKIHVTNH-----TEYHGCLQLDNPTHMNNGDYTL 79
Query: 80 KATN 83
A N
Sbjct: 80 IAKN 83
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 237 GTPTPEVKWFKNGKEI-VSKDIETKDNVTK-------LVIKQTTKKTTGKYEIRVVNEAG 288
G P P ++WF NG + SK I TK +VT L + T G Y + NE G
Sbjct: 27 GNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYG 86
Query: 289 E 289
+
Sbjct: 87 K 87
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 223 VPKDSTVTLEAEYTGTPTPEVKW-FKNGK--EIVSKDIET----KDNVT----KLVIKQT 271
VP++ ++ L Y+G +P V+W F G +V + + D VT +
Sbjct: 13 VPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSV 72
Query: 272 TKKTTGKYEIRVVNEAGEARTSGSVTITV 300
T+K G+Y V E G+ S+ +TV
Sbjct: 73 TRKDNGEYTCMVSEEGGQNYGEVSIHLTV 101
>pdb|1WWW|X Chain X, Ngf In Complex With Domain 5 Of The Trka Receptor
pdb|1WWW|Y Chain Y, Ngf In Complex With Domain 5 Of The Trka Receptor
Length = 101
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 30 VEGHPLPTMTWQKDGTELHATEHYLITTVESVST-------LEIINPTKEDIGVYTCKAT 82
V+G P P++ W +G+ L+ T +E + L + PT + G YT A
Sbjct: 24 VDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA 83
Query: 83 NIGGVATCS 91
N G A+ S
Sbjct: 84 NPFGQASAS 92
>pdb|2Q6W|B Chain B, The Structure Of Hla-Dra, Drb30101 (Dr52a) With Bound
Platelet Integrin Peptide Associated With Fetal And
Neonatal Alloimmune Thrombocytopenia
pdb|2Q6W|E Chain E, The Structure Of Hla-Dra, Drb30101 (Dr52a) With Bound
Platelet Integrin Peptide Associated With Fetal And
Neonatal Alloimmune Thrombocytopenia
Length = 190
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 14/72 (19%)
Query: 187 GRAE--CRANLVLRKATTIDK---PRVLEAPTIVRPLQ--ALLVPKDSTVTLEAEYTGTP 239
GR + CR N + ++ T+ + P+V P +PLQ LLV ++ Y G+
Sbjct: 73 GRVDNYCRHNYGVGESFTVQRRVHPQVTVYPAKTQPLQHHNLLV-----CSVSGFYPGSI 127
Query: 240 TPEVKWFKNGKE 251
EV+WF+NG+E
Sbjct: 128 --EVRWFRNGQE 137
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From
Human Advanced Glycosylation End Product-Specific
Receptor
Length = 96
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 26 FTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN 83
TC+V P P + W KDG L ++ E I P +D G Y+C AT+
Sbjct: 30 LTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPE-------IGP--QDQGTYSCVATH 78
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNG 249
E +V P + P TVTL E P+P++ W K+G
Sbjct: 10 EVQLVVEPEGGAVAP-GGTVTLTCEVPAQPSPQIHWMKDG 48
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
Length = 91
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 215 VRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKN 248
V P L+P ST+ L+ G+P P +WFKN
Sbjct: 8 VEPTSQKLMP-GSTLVLQCVAVGSPIPHYQWFKN 40
>pdb|2DLT|A Chain A, Solution Structure Of The Ig-Like Domain(433- 525) Of
Murine Myosin-Binding Protein C, Fast-Type
Length = 106
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 10 IEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINP 69
++ I + + A+F C+V + T W K+G E+ ++ I+ V L I +
Sbjct: 12 LQDIADLTVKAAEQAVFKCEVSDEKV-TGKWYKNGVEVRPSKRITISHVGRFHKLVIDDV 70
Query: 70 TKEDIGVYTCKATNIGGVATCSANLIVLEKEESG 103
ED G YT G + SA L LE + SG
Sbjct: 71 RPEDEGDYTFVPD--GYALSLSAKLNFLEIKVSG 102
>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like Domain(2826-2915)
From Human Obscurin
Length = 103
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 213 TIVRPLQALLVPKDSTVTLEAE--YTGTPTPEVKWFKNGKEIVSK---DIETKDNVTKLV 267
I++PL+ V V L E GTP V W K+ K I D+ + + LV
Sbjct: 10 AIIKPLEDQWVAPGEDVELRCELSRAGTP---VHWLKDRKAIRKSQKYDVVCEGTMAMLV 66
Query: 268 IKQTTKKTTGKYEIRV 283
I+ + K G+Y V
Sbjct: 67 IRGASLKDAGEYTCEV 82
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 26 FTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN 83
TC+V P P + W KDG L ++ E I P +D G Y+C AT+
Sbjct: 23 LTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPE-------IGP--QDQGTYSCVATH 71
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNG 249
E +V P + P TVTL E P+P++ W K+G
Sbjct: 3 EVQLVVEPEGGAVAP-GGTVTLTCEVPAQPSPQIHWMKDG 41
>pdb|1KAC|B Chain B, Knob Domain From Adenovirus Serotype 12 In Complex With
Domain 1 Of Its Cellular Receptor Car
pdb|1P69|B Chain B, Structural Basis For Variation In Adenovirus Affinity For
The Cellular Receptor Car (P417s Mutant)
pdb|1P6A|B Chain B, Structural Basis For Variation In Asdenovirus Affinity For
The Cellular Receptor Car (S489y Mutant)
Length = 124
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 46 ELHATEHYLITTVES-VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
+L H+ ++S +++ + N DIG Y CK GVA +L+VL K
Sbjct: 66 DLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVK 120
>pdb|1RSF|A Chain A, Nmr Structure Of Monomeric Car D1 Domain
Length = 126
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 46 ELHATEHYLITTVES-VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
+L H+ ++S +++ + N DIG Y CK GVA +L+VL K
Sbjct: 68 DLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVK 122
>pdb|2C1O|B Chain B, Enaiihis Fab Fragment In The Free Form
pdb|2C1O|H Chain H, Enaiihis Fab Fragment In The Free Form
Length = 218
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 59 ESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKP-VIA 117
S + +++ +PT ED VY C + G L+ + ++ P PL P A
Sbjct: 76 SSTAYIQLSSPTSEDSAVYYCARDDYDGAFWGQGTLVTVSAAKT--TPPSVYPLAPGSAA 133
Query: 118 EAQSPATLKATVTGR-PTP-SICWYRG 142
+ S TL V G P P ++ W G
Sbjct: 134 QTNSMVTLGCLVKGYFPAPVTVTWNSG 160
>pdb|2C1P|B Chain B, Fab-Fragment Of Enantioselective Antibody Complexed With
Finrozole
pdb|2C1P|H Chain H, Fab-Fragment Of Enantioselective Antibody Complexed With
Finrozole
Length = 217
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 59 ESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKP-VIA 117
S + +++ +PT ED VY C + G L+ + ++ P PL P A
Sbjct: 75 SSTAYIQLSSPTSEDSAVYYCARDDYDGAFWGQGTLVTVSAAKT--TPPSVYPLAPGSAA 132
Query: 118 EAQSPATLKATVTGR-PTP-SICWYRG 142
+ S TL V G P P ++ W G
Sbjct: 133 QTNSMVTLGCLVKGYFPAPVTVTWNSG 159
>pdb|1JEW|R Chain R, Cryo-Em Structure Of Coxsackievirus B3(M Strain) With Its
Cellular Receptor, Coxsackievirus And Adenovirus
Receptor (Car)
Length = 120
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 46 ELHATEHYLITTVES-VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
+L H+ ++S +++ + N DIG Y CK GVA +L+VL K
Sbjct: 66 DLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVK 120
>pdb|1HE7|A Chain A, Human Nerve Growth Factor Receptor Trka
Length = 126
Score = 29.3 bits (64), Expect = 6.3, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 30 VEGHPLPTMTWQKDGTELHATEHYLITTVESVST-------LEIINPTKEDIGVYTCKAT 82
V+G P P++ W +G+ L+ T +E + L + PT + G YT A
Sbjct: 24 VDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA 83
Query: 83 NIGGVATCS 91
N G A+ S
Sbjct: 84 NPFGQASAS 92
>pdb|2WNG|A Chain A, Complete Extracellular Structure Of Human Signal
Regulatory Protein (Sirp) Alpha
Length = 327
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 65/174 (37%), Gaps = 38/174 (21%)
Query: 110 KPLKPVIAEAQSPATLKATVTGR-PTPSICWYRGK---EEILPDN--GH----------- 152
+P K V A A L TVT P I W+RG E++ + GH
Sbjct: 8 QPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSEST 67
Query: 153 ---TMEFNPTTGECVLSISEATPQDEAVY-SVKAVNTFGRAECRANLVLRKATTIDKPRV 208
M+F+ +SIS TP D Y VK F + T +
Sbjct: 68 KRENMDFS-------ISISNITPADAGTYYCVK----FRKGSPDTEFKSGAGTELSVRAK 116
Query: 209 LEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEV--KWFKNGKEIVSKDIETK 260
AP + P A P+ TV+ E G ++ KWFKNG E+ D +T
Sbjct: 117 PSAPVVSGPA-ARATPQH-TVSFTCESHGFSPRDITLKWFKNGNEL--SDFQTN 166
>pdb|1X44|A Chain A, Solution Structure Of The Third Ig-Like Domain Of Myosin-
Dinding Protein C, Slow-Type
Length = 103
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 229 VTLEAEYTGTPTPEVKWFKNGKEIVSK-------DIETKDNVTKLVIKQTTKKTTGKYEI 281
V LE E + VKWFKNG+EI+ +E K ++ L+I+ TK +Y +
Sbjct: 25 VELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI--LIIEGATKADAAEYSV 81
Query: 282 RVVNEAGEARTS 293
A+ S
Sbjct: 82 MTTGGQSSAKLS 93
>pdb|2WBW|B Chain B, Ad37 Fibre Head In Complex With Car D1 And Sialic Acid
Length = 128
Score = 28.9 bits (63), Expect = 7.6, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 62 STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
+++ + N DIG Y CK GVA +L+VL K
Sbjct: 91 ASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLGK 128
>pdb|2EO1|A Chain A, Solution Structure Of The Ig Domain Of Human Obscn Protein
Length = 102
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 227 STVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKY 279
++ TL E T EV W+K+GK++ S +E +LV++Q + G+Y
Sbjct: 27 ASATLSCEVAQAQT-EVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEY 81
>pdb|2J12|B Chain B, Ad37 Fibre Head In Complex With Car D1
pdb|2J1K|A Chain A, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|B Chain B, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|G Chain G, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|J Chain J, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|K Chain K, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|O Chain O, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|P Chain P, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|T Chain T, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|V Chain V, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|X Chain X, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|Y Chain Y, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|Z Chain Z, Cav-2 Fibre Head In Complex With Car D1
Length = 128
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 62 STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
+++ + N DIG Y CK GVA +L+VL K
Sbjct: 91 ASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVK 128
>pdb|1F5W|A Chain A, Dimeric Structure Of The Coxsackie Virus And Adenovirus
Receptor D1 Domain
pdb|1F5W|B Chain B, Dimeric Structure Of The Coxsackie Virus And Adenovirus
Receptor D1 Domain
pdb|1EAJ|A Chain A, Dimeric Structure Of The Coxsackie Virus And Adenovirus
Receptor D1 Domain At 1.35 Angstrom Resolution
pdb|1EAJ|B Chain B, Dimeric Structure Of The Coxsackie Virus And Adenovirus
Receptor D1 Domain At 1.35 Angstrom Resolution
Length = 126
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 62 STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
+++ + N DIG Y CK GVA +L+VL K
Sbjct: 89 ASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVK 126
>pdb|3KHO|A Chain A, Crystal Structure Of Murine Ig-Beta (Cd79b) Homodimer
pdb|3KHO|B Chain B, Crystal Structure Of Murine Ig-Beta (Cd79b) Homodimer
pdb|3KHQ|A Chain A, Crystal Structure Of Murine Ig-Beta (Cd79b) In The
Monomeric Form
Length = 133
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 38 MTW-QKDGT----ELHATEHYLITTVE-SVSTLEIINPTKEDIGVYTCK----ATNIGGV 87
+TW +K G+ EL + E ++ T SV TL I N ED G+Y CK + N
Sbjct: 47 LTWFRKRGSQQPQELVSEEGRIVQTQNGSVYTLTIQNIQYEDNGIYFCKQKCDSANHNVT 106
Query: 88 ATCSANLIVL 97
+C L+VL
Sbjct: 107 DSCGTELLVL 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,939,781
Number of Sequences: 62578
Number of extensions: 715239
Number of successful extensions: 3594
Number of sequences better than 100.0: 181
Number of HSP's better than 100.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 2663
Number of HSP's gapped (non-prelim): 657
length of query: 579
length of database: 14,973,337
effective HSP length: 104
effective length of query: 475
effective length of database: 8,465,225
effective search space: 4020981875
effective search space used: 4020981875
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)