Query psy16852
Match_columns 579
No_of_seqs 305 out of 2586
Neff 11.6
Searched_HMMs 46136
Date Fri Aug 16 23:43:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16852.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16852hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 1.3E-60 2.8E-65 470.7 45.3 494 7-578 40-550 (1051)
2 KOG3513|consensus 100.0 1.1E-51 2.3E-56 407.8 43.1 462 11-535 141-614 (1051)
3 KOG4222|consensus 100.0 2.5E-44 5.5E-49 351.4 24.1 469 1-535 26-511 (1281)
4 KOG4221|consensus 100.0 9.3E-40 2E-44 321.5 34.4 458 6-536 140-612 (1381)
5 KOG4221|consensus 100.0 6.6E-39 1.4E-43 315.5 32.9 491 4-574 39-545 (1381)
6 KOG4222|consensus 100.0 1.2E-35 2.5E-40 291.1 20.9 417 104-579 30-455 (1281)
7 KOG4194|consensus 100.0 1.3E-30 2.8E-35 239.5 20.9 280 3-301 500-798 (873)
8 PHA02785 IL-beta-binding prote 100.0 2.7E-28 5.8E-33 225.8 27.8 255 14-289 34-317 (326)
9 KOG4194|consensus 100.0 1.4E-28 2.9E-33 226.4 21.8 272 210-533 502-796 (873)
10 PHA02785 IL-beta-binding prote 100.0 3.6E-27 7.7E-32 218.3 29.5 263 222-523 37-317 (326)
11 KOG3515|consensus 99.9 1.8E-23 3.8E-28 203.0 19.4 483 16-572 17-523 (741)
12 PHA02826 IL-1 receptor-like pr 99.9 9.1E-21 2E-25 163.9 18.3 163 12-190 28-215 (227)
13 KOG3515|consensus 99.9 3.6E-20 7.7E-25 180.3 20.5 505 2-578 93-628 (741)
14 PHA02826 IL-1 receptor-like pr 99.8 1.6E-18 3.5E-23 150.0 19.3 170 296-523 30-213 (227)
15 cd05762 Ig8_MLCK Eighth immuno 99.8 1.3E-18 2.7E-23 130.2 13.2 95 7-101 1-95 (98)
16 cd05762 Ig8_MLCK Eighth immuno 99.8 5.5E-18 1.2E-22 126.7 12.6 91 408-533 1-91 (98)
17 cd05747 Ig5_Titin_like M5, fif 99.7 4.1E-17 8.8E-22 121.4 13.0 90 5-94 2-91 (92)
18 cd05851 Ig3_Contactin-1 Third 99.7 6.4E-17 1.4E-21 118.6 10.6 88 407-533 1-88 (88)
19 cd05851 Ig3_Contactin-1 Third 99.7 8.4E-17 1.8E-21 118.0 10.3 87 6-96 1-87 (88)
20 PF07679 I-set: Immunoglobulin 99.7 2.4E-16 5.3E-21 117.6 13.0 90 7-96 1-90 (90)
21 cd05747 Ig5_Titin_like M5, fif 99.7 5.8E-16 1.3E-20 115.2 12.2 90 406-530 2-91 (92)
22 cd05737 Ig_Myomesin_like_C C-t 99.7 8.2E-16 1.8E-20 114.3 12.3 85 12-96 7-92 (92)
23 PF07679 I-set: Immunoglobulin 99.7 1.1E-15 2.4E-20 114.0 13.0 90 408-532 1-90 (90)
24 cd05737 Ig_Myomesin_like_C C-t 99.7 1.2E-15 2.6E-20 113.4 12.4 84 415-532 9-92 (92)
25 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 1.1E-15 2.5E-20 111.1 11.8 82 416-532 4-86 (86)
26 cd04975 Ig4_SCFR_like Fourth i 99.7 1.2E-15 2.5E-20 114.0 11.8 89 415-533 11-100 (101)
27 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 2.3E-15 4.9E-20 109.6 12.5 83 14-96 3-86 (86)
28 cd04972 Ig_TrkABC_d4 Fourth do 99.7 3.1E-15 6.8E-20 110.7 12.9 88 9-96 3-90 (90)
29 cd05852 Ig5_Contactin-1 Fifth 99.7 8.9E-16 1.9E-20 107.5 9.4 73 422-532 1-73 (73)
30 cd05745 Ig3_Peroxidasin Third 99.7 8.5E-16 1.8E-20 109.0 9.1 74 421-532 1-74 (74)
31 cd04975 Ig4_SCFR_like Fourth i 99.6 2.7E-15 5.9E-20 112.0 11.9 83 15-97 12-100 (101)
32 cd05870 Ig5_NCAM-2 Fifth immun 99.6 2.2E-15 4.8E-20 113.5 11.3 91 5-96 1-98 (98)
33 cd04968 Ig3_Contactin_like Thi 99.6 2.3E-15 4.9E-20 111.1 11.0 87 6-96 1-87 (88)
34 cd05728 Ig4_Contactin-2-like F 99.6 2.5E-15 5.5E-20 109.6 11.0 83 411-532 3-85 (85)
35 cd04972 Ig_TrkABC_d4 Fourth do 99.6 4.5E-15 9.8E-20 109.9 12.4 86 412-532 5-90 (90)
36 cd05869 Ig5_NCAM-1 Fifth immun 99.6 4.4E-15 9.5E-20 111.6 12.4 92 5-96 1-97 (97)
37 cd05859 Ig4_PDGFR-alpha Fourth 99.6 3.5E-15 7.5E-20 111.8 11.6 89 416-533 12-100 (101)
38 cd05735 Ig8_DSCAM Eight immuno 99.6 3.7E-15 8.1E-20 109.1 11.4 81 422-533 1-82 (88)
39 cd05865 Ig1_NCAM-1 First immun 99.6 3.4E-15 7.5E-20 110.6 11.1 85 414-532 7-95 (96)
40 cd05730 Ig3_NCAM-1_like Third 99.6 5.5E-15 1.2E-19 111.0 12.4 92 6-98 1-94 (95)
41 cd05892 Ig_Myotilin_C C-termin 99.6 5E-15 1.1E-19 104.0 10.9 74 425-532 1-75 (75)
42 cd05728 Ig4_Contactin-2-like F 99.6 4.3E-15 9.3E-20 108.4 10.8 84 9-96 2-85 (85)
43 cd05863 Ig2_VEGFR-3 Second imm 99.6 3.3E-15 7.2E-20 101.5 9.4 66 425-533 1-66 (67)
44 cd05730 Ig3_NCAM-1_like Third 99.6 5.6E-15 1.2E-19 110.9 11.6 83 415-533 11-93 (95)
45 cd05869 Ig5_NCAM-1 Fifth immun 99.6 8.6E-15 1.9E-19 110.0 12.0 96 407-532 2-97 (97)
46 cd05748 Ig_Titin_like Immunogl 99.6 7.5E-15 1.6E-19 104.3 10.9 74 424-532 1-74 (74)
47 cd04968 Ig3_Contactin_like Thi 99.6 8.5E-15 1.8E-19 108.1 11.6 86 408-532 2-87 (88)
48 cd05732 Ig5_NCAM-1_like Fifth 99.6 8E-15 1.7E-19 110.6 11.6 91 5-96 1-96 (96)
49 cd05866 Ig1_NCAM-2 First immun 99.6 1.3E-14 2.7E-19 106.3 11.9 84 413-532 6-91 (92)
50 cd05866 Ig1_NCAM-2 First immun 99.6 1.5E-14 3.3E-19 105.9 12.2 87 9-96 3-91 (92)
51 cd05723 Ig4_Neogenin Fourth im 99.6 9.2E-15 2E-19 102.5 10.6 71 424-532 1-71 (71)
52 cd05891 Ig_M-protein_C C-termi 99.6 1.2E-14 2.5E-19 107.7 11.7 85 414-532 8-92 (92)
53 cd05891 Ig_M-protein_C C-termi 99.6 1.4E-14 3E-19 107.2 12.0 85 12-96 7-92 (92)
54 cd05892 Ig_Myotilin_C C-termin 99.6 1E-14 2.3E-19 102.3 10.2 73 24-96 1-75 (75)
55 cd05852 Ig5_Contactin-1 Fifth 99.6 6.8E-15 1.5E-19 103.0 9.3 73 21-96 1-73 (73)
56 cd05893 Ig_Palladin_C C-termin 99.6 1.4E-14 3E-19 101.9 10.9 74 425-532 1-75 (75)
57 cd05865 Ig1_NCAM-1 First immun 99.6 1.5E-14 3.2E-19 107.2 11.2 87 10-96 4-95 (96)
58 cd05745 Ig3_Peroxidasin Third 99.6 7E-15 1.5E-19 104.2 9.0 74 20-96 1-74 (74)
59 cd05867 Ig4_L1-CAM_like Fourth 99.6 1.7E-14 3.8E-19 102.8 11.0 74 422-532 1-75 (76)
60 cd05735 Ig8_DSCAM Eight immuno 99.6 2.7E-14 5.8E-19 104.6 12.0 80 21-100 1-85 (88)
61 cd05748 Ig_Titin_like Immunogl 99.6 3.1E-14 6.8E-19 101.1 11.8 74 23-96 1-74 (74)
62 cd05868 Ig4_NrCAM Fourth immun 99.6 1.7E-14 3.6E-19 102.5 10.2 75 422-532 1-75 (76)
63 cd05870 Ig5_NCAM-2 Fifth immun 99.6 2.1E-14 4.6E-19 108.1 11.0 95 407-532 2-98 (98)
64 cd05732 Ig5_NCAM-1_like Fifth 99.6 2.2E-14 4.8E-19 108.2 11.1 95 407-532 2-96 (96)
65 cd05863 Ig2_VEGFR-3 Second imm 99.6 1.6E-14 3.5E-19 98.2 9.3 66 24-97 1-66 (67)
66 cd04969 Ig5_Contactin_like Fif 99.6 1.8E-14 3.9E-19 101.9 9.8 73 422-532 1-73 (73)
67 cd05743 Ig_Perlecan_D2_like Im 99.6 3.7E-14 8E-19 101.6 11.3 76 21-96 1-76 (78)
68 cd05859 Ig4_PDGFR-alpha Fourth 99.6 4E-14 8.6E-19 106.1 11.8 83 15-97 12-100 (101)
69 cd05848 Ig1_Contactin-5 First 99.6 3.6E-14 7.9E-19 105.4 11.5 82 7-90 2-87 (94)
70 cd05743 Ig_Perlecan_D2_like Im 99.6 3E-14 6.5E-19 102.1 10.6 76 422-532 1-76 (78)
71 cd05868 Ig4_NrCAM Fourth immun 99.6 3.2E-14 7E-19 101.0 10.6 76 21-97 1-76 (76)
72 cd05855 Ig_TrkB_d5 Fifth domai 99.6 2.7E-14 5.8E-19 100.3 9.9 75 427-531 3-77 (79)
73 cd05893 Ig_Palladin_C C-termin 99.6 3.1E-14 6.7E-19 100.2 10.1 73 24-96 1-75 (75)
74 cd05854 Ig6_Contactin-2 Sixth 99.6 4.8E-14 1.1E-18 102.3 11.3 77 423-533 1-82 (85)
75 cd07693 Ig1_Robo First immunog 99.6 4.2E-14 9.1E-19 108.1 11.1 91 6-96 1-99 (100)
76 cd05867 Ig4_L1-CAM_like Fourth 99.6 6E-14 1.3E-18 100.0 11.1 74 21-96 1-75 (76)
77 cd04978 Ig4_L1-NrCAM_like Four 99.6 3.8E-14 8.3E-19 101.6 10.1 75 422-532 1-75 (76)
78 cd05744 Ig_Myotilin_C_like Imm 99.6 6.7E-14 1.5E-18 99.0 11.0 74 425-532 1-75 (75)
79 cd04976 Ig2_VEGFR Second immun 99.6 4.4E-14 9.4E-19 98.7 9.7 70 425-533 1-70 (71)
80 cd05848 Ig1_Contactin-5 First 99.6 6.5E-14 1.4E-18 104.0 11.2 82 408-526 2-87 (94)
81 cd05864 Ig2_VEGFR-2 Second imm 99.5 4.2E-14 9.1E-19 97.6 9.3 69 425-533 1-69 (70)
82 cd05746 Ig4_Peroxidasin Fourth 99.5 2.2E-14 4.7E-19 100.0 8.0 68 425-530 1-68 (69)
83 cd05857 Ig2_FGFR Second immuno 99.5 6.2E-14 1.4E-18 102.9 10.7 82 417-532 4-85 (85)
84 cd05740 Ig_CEACAM_D4 Fourth im 99.5 6.4E-14 1.4E-18 103.0 10.7 87 6-96 1-90 (91)
85 cd04973 Ig1_FGFR First immunog 99.5 4.4E-14 9.4E-19 101.3 9.5 78 13-95 1-78 (79)
86 cd05854 Ig6_Contactin-2 Sixth 99.5 1.1E-13 2.4E-18 100.5 11.5 78 22-99 1-84 (85)
87 cd05773 Ig8_hNephrin_like Eigh 99.5 1.3E-13 2.9E-18 105.4 12.5 96 4-99 2-107 (109)
88 cd05850 Ig1_Contactin-2 First 99.5 1.2E-13 2.5E-18 102.8 11.8 83 6-90 1-87 (94)
89 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 7.8E-14 1.7E-18 96.5 10.0 69 422-531 1-69 (69)
90 cd04971 Ig_TrKABC_d5 Fifth dom 99.5 9.1E-14 2E-18 99.4 10.7 78 427-532 3-80 (81)
91 cd05857 Ig2_FGFR Second immuno 99.5 9.6E-14 2.1E-18 101.9 11.1 81 16-96 4-85 (85)
92 cd05876 Ig3_L1-CAM Third immun 99.5 4.1E-14 9E-19 99.1 8.7 70 425-532 1-70 (71)
93 cd04978 Ig4_L1-NrCAM_like Four 99.5 7.7E-14 1.7E-18 100.0 9.9 75 21-96 1-75 (76)
94 cd05744 Ig_Myotilin_C_like Imm 99.5 1.3E-13 2.7E-18 97.6 10.7 73 24-96 1-75 (75)
95 cd05723 Ig4_Neogenin Fourth im 99.5 1.7E-13 3.8E-18 96.0 11.3 71 23-96 1-71 (71)
96 cd05758 Ig5_KIRREL3-like Fifth 99.5 1.5E-13 3.2E-18 103.5 11.4 92 407-530 2-97 (98)
97 cd05773 Ig8_hNephrin_like Eigh 99.5 1.6E-13 3.5E-18 104.9 11.6 82 421-533 22-105 (109)
98 cd05771 IgC_Tapasin_R Tapasin- 99.5 3.1E-13 6.8E-18 109.3 14.0 129 365-522 2-132 (139)
99 cd07693 Ig1_Robo First immunog 99.5 1.3E-13 2.8E-18 105.4 11.1 92 407-532 1-99 (100)
100 cd05850 Ig1_Contactin-2 First 99.5 2.1E-13 4.6E-18 101.4 11.7 86 408-530 2-92 (94)
101 cd05858 Ig3_FGFR-2 Third immun 99.5 1.3E-13 2.8E-18 101.9 10.4 85 422-532 1-89 (90)
102 cd05864 Ig2_VEGFR-2 Second imm 99.5 7.5E-14 1.6E-18 96.3 8.4 69 24-97 1-69 (70)
103 cd04969 Ig5_Contactin_like Fif 99.5 1.3E-13 2.8E-18 97.5 9.7 73 21-96 1-73 (73)
104 cd05749 Ig2_Tyro3_like Second 99.5 1.2E-13 2.6E-18 98.4 9.5 74 9-90 1-75 (81)
105 cd04973 Ig1_FGFR First immunog 99.5 9.8E-14 2.1E-18 99.5 9.1 78 415-532 2-79 (79)
106 cd05760 Ig2_PTK7 Second immuno 99.5 1.8E-13 3.9E-18 97.6 10.0 72 425-532 1-72 (77)
107 cd05849 Ig1_Contactin-1 First 99.5 1.4E-13 3E-18 101.7 9.6 81 6-90 1-86 (93)
108 cd05855 Ig_TrkB_d5 Fifth domai 99.5 2.5E-13 5.5E-18 95.4 10.4 70 26-95 3-77 (79)
109 cd05740 Ig_CEACAM_D4 Fourth im 99.5 3E-13 6.5E-18 99.4 11.4 79 415-532 11-90 (91)
110 cd04971 Ig_TrKABC_d5 Fifth dom 99.5 3.2E-13 6.9E-18 96.6 11.0 70 26-95 3-79 (81)
111 cd05853 Ig6_Contactin-4 Sixth 99.5 2.7E-13 5.9E-18 96.8 10.5 77 423-533 1-82 (85)
112 cd04976 Ig2_VEGFR Second immun 99.5 1.8E-13 3.8E-18 95.7 9.4 70 24-97 1-70 (71)
113 cd04970 Ig6_Contactin_like Six 99.5 2.7E-13 5.8E-18 99.2 10.7 80 423-533 1-82 (85)
114 cd05763 Ig_1 Subgroup of the i 99.5 1.6E-13 3.4E-18 97.7 9.2 73 425-532 1-74 (75)
115 cd05756 Ig1_IL1R_like First im 99.5 8.1E-14 1.8E-18 102.9 7.6 83 12-96 5-94 (94)
116 cd05758 Ig5_KIRREL3-like Fifth 99.5 5.4E-13 1.2E-17 100.5 12.3 88 6-94 2-97 (98)
117 cd04977 Ig1_NCAM-1_like First 99.5 5E-13 1.1E-17 98.9 11.8 86 9-95 3-91 (92)
118 cd05731 Ig3_L1-CAM_like Third 99.5 2.2E-13 4.8E-18 96.1 9.4 70 425-532 1-70 (71)
119 cd04974 Ig3_FGFR Third immunog 99.5 1.6E-13 3.5E-18 101.2 8.7 85 422-532 1-89 (90)
120 cd05898 Ig5_KIRREL3 Fifth immu 99.5 5E-13 1.1E-17 98.1 11.0 94 407-530 2-97 (98)
121 cd04970 Ig6_Contactin_like Six 99.5 4.1E-13 8.9E-18 98.2 10.6 78 22-99 1-84 (85)
122 cd05856 Ig2_FGFRL1-like Second 99.5 2.5E-13 5.5E-18 99.2 9.5 78 418-532 5-82 (82)
123 cd05853 Ig6_Contactin-4 Sixth 99.5 2.8E-13 6E-18 96.8 9.3 78 22-99 1-84 (85)
124 cd05722 Ig1_Neogenin First imm 99.5 3.3E-13 7.2E-18 101.1 10.2 86 9-95 2-94 (95)
125 cd05876 Ig3_L1-CAM Third immun 99.5 2.7E-13 5.8E-18 95.0 9.0 70 24-96 1-70 (71)
126 cd04977 Ig1_NCAM-1_like First 99.5 5.7E-13 1.2E-17 98.6 11.2 83 414-531 7-91 (92)
127 cd05749 Ig2_Tyro3_like Second 99.5 4.3E-13 9.4E-18 95.5 10.1 72 412-526 3-75 (81)
128 cd05760 Ig2_PTK7 Second immuno 99.5 3.7E-13 8E-18 96.0 9.7 72 24-96 1-74 (77)
129 cd05725 Ig3_Robo Third immunog 99.5 2E-13 4.4E-18 95.3 8.2 69 425-532 1-69 (69)
130 cd05849 Ig1_Contactin-1 First 99.5 5.3E-13 1.1E-17 98.6 10.8 84 408-530 2-91 (93)
131 cd05746 Ig4_Peroxidasin Fourth 99.5 2.5E-13 5.5E-18 94.6 8.5 68 24-94 1-68 (69)
132 cd05736 Ig2_Follistatin_like S 99.5 4.1E-13 8.8E-18 95.9 9.7 74 425-533 1-74 (76)
133 cd05752 Ig1_FcgammaR_like Frst 99.5 1.2E-13 2.6E-18 97.8 6.6 67 7-84 1-68 (78)
134 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 5.8E-13 1.3E-17 92.1 9.9 68 21-94 1-68 (69)
135 cd05764 Ig_2 Subgroup of the i 99.5 5.4E-13 1.2E-17 94.8 9.9 73 422-532 1-74 (74)
136 cd05738 Ig2_RPTP_IIa_LAR_like 99.5 4.7E-13 1E-17 94.6 9.4 72 425-532 1-73 (74)
137 cd05724 Ig2_Robo Second immuno 99.5 4.1E-13 8.8E-18 99.0 9.2 80 12-94 2-84 (86)
138 cd05763 Ig_1 Subgroup of the i 99.5 3.1E-13 6.6E-18 96.2 8.2 73 24-96 1-74 (75)
139 cd05726 Ig4_Robo Fhird immunog 99.5 3.4E-13 7.4E-18 99.8 8.6 83 422-534 1-83 (90)
140 cd07702 Ig2_VEGFR-1 Second imm 99.5 6.3E-13 1.4E-17 91.8 9.3 70 425-532 1-70 (72)
141 cd05724 Ig2_Robo Second immuno 99.5 8.9E-13 1.9E-17 97.1 10.8 80 414-531 3-85 (86)
142 cd05856 Ig2_FGFRL1-like Second 99.5 7.6E-13 1.6E-17 96.7 10.1 79 16-96 4-82 (82)
143 cd05858 Ig3_FGFR-2 Third immun 99.4 7.4E-13 1.6E-17 97.9 9.5 76 21-96 1-89 (90)
144 cd05736 Ig2_Follistatin_like S 99.4 1E-12 2.3E-17 93.8 9.8 74 24-97 1-74 (76)
145 cd05722 Ig1_Neogenin First imm 99.4 1.3E-12 2.8E-17 97.9 10.6 84 413-532 5-95 (95)
146 cd04967 Ig1_Contactin First Ig 99.4 1.4E-12 3.1E-17 96.7 10.6 82 7-90 2-87 (91)
147 cd05750 Ig_Pro_neuregulin Immu 99.4 9.2E-13 2E-17 94.1 9.1 74 425-530 1-75 (75)
148 cd05756 Ig1_IL1R_like First im 99.4 5.9E-13 1.3E-17 98.3 7.8 82 416-532 8-94 (94)
149 cd05731 Ig3_L1-CAM_like Third 99.4 1.2E-12 2.6E-17 92.4 9.1 70 24-96 1-70 (71)
150 cd05771 IgC_Tapasin_R Tapasin- 99.4 5.6E-12 1.2E-16 102.0 14.0 119 63-187 2-132 (139)
151 cd05725 Ig3_Robo Third immunog 99.4 6.8E-13 1.5E-17 92.6 7.5 69 24-96 1-69 (69)
152 cd05733 Ig6_L1-CAM_like Sixth 99.4 9.7E-13 2.1E-17 93.8 8.3 67 425-526 1-71 (77)
153 cd05750 Ig_Pro_neuregulin Immu 99.4 1.2E-12 2.7E-17 93.5 8.7 70 24-93 1-74 (75)
154 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 1.9E-12 4.2E-17 91.5 9.6 72 24-96 1-73 (74)
155 cd05726 Ig4_Robo Fhird immunog 99.4 2E-12 4.4E-17 95.7 9.5 76 21-99 1-84 (90)
156 cd05874 Ig6_NrCAM Sixth immuno 99.4 2.3E-12 5.1E-17 91.5 9.2 67 425-526 1-71 (77)
157 cd04974 Ig3_FGFR Third immunog 99.4 1.8E-12 4E-17 95.6 9.0 76 21-96 1-89 (90)
158 cd05764 Ig_2 Subgroup of the i 99.4 2.7E-12 6E-17 91.2 9.2 73 21-96 1-74 (74)
159 cd05752 Ig1_FcgammaR_like Frst 99.4 1.2E-12 2.7E-17 92.6 7.1 67 408-520 1-68 (78)
160 cd05765 Ig_3 Subgroup of the i 99.4 2.2E-12 4.8E-17 93.8 8.7 81 422-532 1-81 (81)
161 cd05765 Ig_3 Subgroup of the i 99.4 2.8E-12 6E-17 93.2 8.8 76 21-96 1-81 (81)
162 cd05733 Ig6_L1-CAM_like Sixth 99.4 1.8E-12 4E-17 92.4 7.5 67 24-90 1-71 (77)
163 cd05875 Ig6_hNeurofascin_like 99.4 4.5E-12 9.7E-17 90.0 9.2 66 425-527 1-72 (77)
164 cd05875 Ig6_hNeurofascin_like 99.4 3.8E-12 8.2E-17 90.4 8.8 68 24-91 1-72 (77)
165 cd05861 Ig1_PDGFR-alphabeta Fr 99.4 1.1E-11 2.3E-16 89.9 11.3 77 21-97 1-83 (84)
166 cd04967 Ig1_Contactin First Ig 99.4 9E-12 2E-16 92.4 11.1 82 408-526 2-87 (91)
167 cd07702 Ig2_VEGFR-1 Second imm 99.4 3.8E-12 8.2E-17 87.9 8.3 70 229-298 1-70 (72)
168 cd05742 Ig1_VEGFR_like First i 99.4 3.4E-12 7.4E-17 93.1 8.4 81 422-532 1-83 (84)
169 cd05895 Ig_Pro_neuregulin-1 Im 99.4 4.7E-12 1E-16 90.4 8.8 75 425-530 1-76 (76)
170 cd05874 Ig6_NrCAM Sixth immuno 99.4 5.8E-12 1.3E-16 89.5 9.0 68 24-91 1-72 (77)
171 cd05742 Ig1_VEGFR_like First i 99.4 4.7E-12 1E-16 92.3 8.6 76 21-96 1-83 (84)
172 cd07701 Ig1_Necl-3 First (N-te 99.3 1.1E-11 2.4E-16 92.0 10.6 83 12-95 3-94 (95)
173 cd05898 Ig5_KIRREL3 Fifth immu 99.3 2.3E-11 5.1E-16 89.4 11.7 88 6-94 2-97 (98)
174 cd05861 Ig1_PDGFR-alphabeta Fr 99.3 1.4E-11 3.1E-16 89.2 10.4 81 422-533 1-83 (84)
175 cd05895 Ig_Pro_neuregulin-1 Im 99.3 1.1E-11 2.4E-16 88.4 9.1 70 24-93 1-75 (76)
176 cd05873 Ig_Sema4D_like Immunog 99.3 2.5E-11 5.5E-16 87.0 10.6 69 12-84 2-70 (87)
177 cd05754 Ig3_Perlecan_like Thir 99.3 9.4E-12 2E-16 91.1 8.6 79 10-94 5-84 (85)
178 cd04979 Ig_Semaphorin_C Immuno 99.3 8.7E-12 1.9E-16 92.1 8.3 83 12-97 2-87 (89)
179 cd05734 Ig7_DSCAM Seventh immu 99.3 9.3E-12 2E-16 89.5 7.9 77 425-531 1-78 (79)
180 cd05729 Ig2_FGFR_like Second i 99.3 4.7E-11 1E-15 87.9 11.6 81 418-532 5-85 (85)
181 cd05753 Ig2_FcgammaR_like Seco 99.3 9.6E-12 2.1E-16 89.7 7.5 72 10-89 3-75 (83)
182 cd05882 Ig1_Necl-1 First (N-te 99.3 5.6E-11 1.2E-15 87.7 11.7 71 13-83 4-83 (95)
183 cd05754 Ig3_Perlecan_like Thir 99.3 1.6E-11 3.5E-16 89.8 8.6 77 413-530 7-84 (85)
184 cd05729 Ig2_FGFR_like Second i 99.3 7E-11 1.5E-15 86.9 11.4 80 16-95 4-84 (85)
185 cd05873 Ig_Sema4D_like Immunog 99.3 6.1E-11 1.3E-15 85.1 10.2 68 414-521 3-71 (87)
186 cd05727 Ig2_Contactin-2-like S 99.2 1.6E-11 3.5E-16 89.3 6.2 74 13-86 10-84 (96)
187 cd07701 Ig1_Necl-3 First (N-te 99.2 7.4E-11 1.6E-15 87.6 9.7 91 415-532 5-95 (95)
188 cd05734 Ig7_DSCAM Seventh immu 99.2 3.3E-11 7.2E-16 86.7 7.4 69 24-95 1-78 (79)
189 cd05882 Ig1_Necl-1 First (N-te 99.2 1.4E-10 2.9E-15 85.7 10.7 89 415-531 5-94 (95)
190 cd05757 Ig2_IL1R_like Second i 99.2 7.5E-11 1.6E-15 86.4 9.2 79 416-533 4-87 (92)
191 cd05757 Ig2_IL1R_like Second i 99.2 4.8E-11 1E-15 87.5 8.0 78 15-96 4-86 (92)
192 cd05860 Ig4_SCFR Fourth immuno 99.2 3.1E-10 6.7E-15 82.4 11.4 88 416-533 12-100 (101)
193 cd04979 Ig_Semaphorin_C Immuno 99.2 1E-10 2.2E-15 86.3 9.1 83 415-533 4-87 (89)
194 cd05727 Ig2_Contactin-2-like S 99.2 6.2E-11 1.3E-15 86.2 7.1 74 414-524 10-86 (96)
195 cd07690 Ig1_CD4 First immunogl 99.2 1.4E-10 3E-15 84.9 8.8 72 16-87 2-90 (94)
196 PF13895 Ig_2: Immunoglobulin 99.2 1.5E-10 3.2E-15 84.1 9.0 79 6-96 1-80 (80)
197 cd05881 Ig1_Necl-2 First (N-te 99.2 6.9E-10 1.5E-14 81.1 11.5 71 13-83 4-83 (95)
198 cd05717 Ig1_Necl-1-3_like Firs 99.2 3.7E-10 8.1E-15 84.5 10.4 83 13-96 4-95 (95)
199 smart00409 IG Immunoglobulin. 99.1 1.1E-09 2.4E-14 80.8 12.5 84 13-96 1-85 (86)
200 smart00410 IG_like Immunoglobu 99.1 1.1E-09 2.4E-14 80.8 12.5 84 13-96 1-85 (86)
201 cd05862 Ig1_VEGFR First immuno 99.1 3.5E-10 7.6E-15 82.2 8.9 77 21-97 1-85 (86)
202 cd05871 Ig_Semaphorin_classIII 99.1 3.3E-10 7.1E-15 83.1 8.5 79 14-97 4-89 (91)
203 cd05753 Ig2_FcgammaR_like Seco 99.1 2.2E-10 4.8E-15 82.6 7.4 64 418-524 10-74 (83)
204 cd05862 Ig1_VEGFR First immuno 99.1 5.2E-10 1.1E-14 81.3 9.4 83 422-533 1-85 (86)
205 cd07690 Ig1_CD4 First immunogl 99.1 4.4E-10 9.5E-15 82.3 8.7 86 418-524 3-91 (94)
206 smart00408 IGc2 Immunoglobulin 99.1 2.4E-10 5.2E-15 78.6 7.0 63 20-86 1-63 (63)
207 cd05717 Ig1_Necl-1-3_like Firs 99.1 1.2E-09 2.7E-14 81.7 10.7 91 415-532 5-95 (95)
208 PF13895 Ig_2: Immunoglobulin 99.1 1.6E-09 3.4E-14 78.7 10.1 71 417-532 9-80 (80)
209 cd05845 Ig2_L1-CAM_like Second 99.1 6.7E-10 1.5E-14 80.7 7.8 73 414-524 10-85 (95)
210 cd05860 Ig4_SCFR Fourth immuno 99.1 3.1E-09 6.8E-14 77.2 11.2 83 15-97 12-100 (101)
211 cd05871 Ig_Semaphorin_classIII 99.1 1.7E-09 3.6E-14 79.4 9.7 83 417-533 6-89 (91)
212 PF00047 ig: Immunoglobulin do 99.0 4.8E-10 1E-14 77.0 6.1 61 21-81 1-64 (64)
213 smart00409 IG Immunoglobulin. 99.0 6.6E-09 1.4E-13 76.6 12.5 82 416-532 3-85 (86)
214 smart00410 IG_like Immunoglobu 99.0 6.6E-09 1.4E-13 76.6 12.5 82 416-532 3-85 (86)
215 cd05845 Ig2_L1-CAM_like Second 99.0 4.4E-10 9.6E-15 81.6 5.7 77 7-85 3-82 (95)
216 PHA03376 BARF1; Provisional 99.0 3E-09 6.5E-14 84.5 10.5 125 14-144 19-163 (221)
217 cd05896 Ig1_IL1RAPL-1_like Fir 99.0 1.6E-09 3.5E-14 78.9 8.2 80 14-95 8-103 (104)
218 smart00408 IGc2 Immunoglobulin 99.0 2E-09 4.3E-14 73.9 8.2 63 421-522 1-63 (63)
219 cd05897 Ig2_IL1R2_like Second 99.0 2E-09 4.2E-14 78.6 7.3 74 417-526 5-83 (95)
220 cd05751 Ig1_LILRB1_like First 99.0 1.7E-09 3.6E-14 79.8 7.0 74 6-84 2-75 (91)
221 cd05885 Ig2_Necl-4 Second immu 99.0 7.9E-09 1.7E-13 72.4 9.7 68 424-524 1-69 (80)
222 cd05897 Ig2_IL1R2_like Second 99.0 2.1E-09 4.5E-14 78.5 7.0 72 15-87 4-80 (95)
223 cd05872 Ig_Sema4B_like Immunog 98.9 5.4E-09 1.2E-13 74.4 8.3 65 13-82 3-67 (85)
224 cd04983 IgV_TCR_alpha_like Imm 98.9 9.5E-09 2.1E-13 79.4 9.2 76 10-85 2-93 (109)
225 cd05885 Ig2_Necl-4 Second immu 98.9 6.5E-09 1.4E-13 72.8 6.9 66 23-88 1-69 (80)
226 cd05899 IgV_TCR_beta Immunoglo 98.9 8.6E-09 1.9E-13 79.5 8.2 74 10-84 2-94 (110)
227 cd05872 Ig_Sema4B_like Immunog 98.9 1.6E-08 3.6E-13 71.9 8.6 77 415-532 4-82 (85)
228 PHA03376 BARF1; Provisional 98.9 3.9E-08 8.5E-13 78.3 10.9 125 114-249 20-162 (221)
229 cd05759 Ig2_KIRREL3-like Secon 98.9 2.1E-08 4.5E-13 72.7 8.8 66 23-88 1-72 (82)
230 cd04980 IgV_L_kappa Immunoglob 98.9 1.5E-08 3.3E-13 77.5 8.5 75 9-83 3-92 (106)
231 PF13927 Ig_3: Immunoglobulin 98.8 4.4E-09 9.6E-14 75.1 5.0 74 6-83 1-75 (75)
232 cd05759 Ig2_KIRREL3-like Secon 98.8 4.3E-08 9.4E-13 71.0 9.9 78 424-531 1-79 (82)
233 cd05774 Ig_CEACAM_D1 First imm 98.8 2.2E-08 4.7E-13 75.1 7.9 84 10-94 2-103 (105)
234 cd05711 Ig_FcalphaRI Immunoglo 98.8 1.4E-08 3E-13 75.2 6.8 76 6-83 1-76 (94)
235 cd04982 IgV_TCR_gamma Immunogl 98.8 3.7E-08 8E-13 77.0 9.4 74 10-83 2-98 (116)
236 TIGR00864 PCC polycystin catio 98.8 0.00053 1.2E-08 78.1 44.0 388 71-572 1666-2070(2740)
237 cd05714 Ig_CSPGs_LP Immunoglob 98.8 8.2E-08 1.8E-12 73.5 10.9 79 20-98 1-104 (106)
238 cd05900 Ig_Aggrecan Immunoglob 98.8 6.5E-08 1.4E-12 73.5 10.1 78 20-97 1-109 (112)
239 PF00047 ig: Immunoglobulin do 98.8 1E-08 2.2E-13 70.4 5.2 63 120-182 1-64 (64)
240 cd05896 Ig1_IL1RAPL-1_like Fir 98.8 5.3E-08 1.1E-12 71.1 8.5 85 416-532 9-104 (104)
241 cd05881 Ig1_Necl-2 First (N-te 98.8 2.3E-07 5E-12 67.9 11.7 72 113-185 5-84 (95)
242 cd05879 Ig_P0 Immunoglobulin ( 98.8 9.4E-08 2E-12 73.3 9.9 75 12-86 4-104 (116)
243 cd05714 Ig_CSPGs_LP Immunoglob 98.7 1.7E-07 3.6E-12 71.8 11.2 40 494-533 64-103 (106)
244 cd05718 Ig1_PVR_like First imm 98.7 9.4E-08 2E-12 72.2 9.7 75 22-96 1-97 (98)
245 cd04983 IgV_TCR_alpha_like Imm 98.7 1.3E-07 2.8E-12 73.1 10.3 90 414-522 5-94 (109)
246 cd05877 Ig_LP_like Immunoglobu 98.7 1.8E-07 3.8E-12 71.7 10.8 78 20-97 1-103 (106)
247 PF13927 Ig_3: Immunoglobulin 98.7 3.5E-08 7.6E-13 70.4 6.5 73 408-519 2-75 (75)
248 cd05880 Ig_EVA1 Immunoglobulin 98.7 1.1E-07 2.4E-12 73.5 9.5 75 12-86 4-103 (115)
249 cd05751 Ig1_LILRB1_like First 98.7 5.7E-08 1.2E-12 71.7 7.6 73 212-286 3-75 (91)
250 cd05775 Ig_SLAM-CD84_like_N N- 98.7 6.7E-08 1.5E-12 72.2 7.6 78 19-96 2-96 (97)
251 cd00099 IgV Immunoglobulin var 98.7 9.1E-08 2E-12 73.4 8.6 71 16-86 1-91 (105)
252 cd05713 Ig_MOG_like Immunoglob 98.7 1.7E-07 3.8E-12 70.9 9.9 76 21-96 1-99 (100)
253 cd04984 IgV_L_lambda Immunoglo 98.7 9.4E-08 2E-12 71.9 8.4 68 16-83 1-84 (98)
254 cd05774 Ig_CEACAM_D1 First imm 98.7 1.3E-07 2.7E-12 71.0 8.9 97 415-531 6-104 (105)
255 TIGR00864 PCC polycystin catio 98.7 0.0018 3.9E-08 74.0 46.3 364 14-446 1705-2082(2740)
256 cd05877 Ig_LP_like Immunoglobu 98.7 2.5E-07 5.3E-12 70.9 10.3 38 496-533 66-103 (106)
257 cd05878 Ig_Aggrecan_like Immun 98.7 3.4E-07 7.4E-12 70.1 10.6 78 20-97 1-107 (110)
258 cd05713 Ig_MOG_like Immunoglob 98.7 5.2E-07 1.1E-11 68.3 11.4 37 496-532 63-99 (100)
259 cd05899 IgV_TCR_beta Immunoglo 98.6 2.1E-07 4.5E-12 71.8 9.2 91 414-522 5-96 (110)
260 cd05715 Ig_P0-like Immunoglobu 98.6 1.9E-07 4.2E-12 72.6 8.6 75 12-86 4-104 (116)
261 PF07686 V-set: Immunoglobulin 98.6 3.8E-07 8.3E-12 71.3 10.4 88 9-96 4-114 (114)
262 cd04982 IgV_TCR_gamma Immunogl 98.6 3.2E-07 7E-12 71.6 9.7 90 415-520 6-99 (116)
263 cd05900 Ig_Aggrecan Immunoglob 98.6 7.4E-07 1.6E-11 67.8 11.1 39 495-533 71-109 (112)
264 cd05879 Ig_P0 Immunoglobulin ( 98.6 6E-07 1.3E-11 68.9 10.4 77 113-189 6-106 (116)
265 cd07706 IgV_TCR_delta Immunogl 98.6 2.9E-07 6.3E-12 71.8 8.8 75 9-83 2-93 (116)
266 cd05741 Ig_CEACAM_D1_like Firs 98.6 2.8E-07 6E-12 68.7 7.9 65 21-86 1-81 (92)
267 cd05755 Ig2_ICAM-1_like Second 98.6 2.5E-07 5.5E-12 68.0 7.3 79 8-86 3-86 (100)
268 cd05888 Ig1_Nectin-4_like Frst 98.6 6.9E-07 1.5E-11 67.2 9.9 74 23-96 2-99 (100)
269 cd00098 IgC Immunoglobulin Con 98.6 5.4E-07 1.2E-11 67.6 9.4 75 420-523 11-87 (95)
270 PHA02987 Ig domain OX-2-like p 98.6 8.7E-07 1.9E-11 71.6 10.5 87 13-99 22-124 (189)
271 cd05902 Ig_Neurocan Immunoglob 98.5 1.1E-06 2.4E-11 66.6 10.3 77 21-97 2-107 (110)
272 cd05878 Ig_Aggrecan_like Immun 98.5 1.4E-06 3E-11 66.7 10.8 40 494-533 68-107 (110)
273 PF07686 V-set: Immunoglobulin 98.5 1.5E-06 3.3E-11 67.9 11.3 103 414-532 8-114 (114)
274 cd05883 Ig2_Necl-2 Second immu 98.5 1.5E-06 3.2E-11 61.2 9.5 74 24-97 2-80 (82)
275 cd00099 IgV Immunoglobulin var 98.5 8.9E-07 1.9E-11 67.9 9.3 87 418-522 2-91 (105)
276 cd05880 Ig_EVA1 Immunoglobulin 98.5 2E-06 4.4E-11 66.5 11.2 94 415-523 6-104 (115)
277 cd05741 Ig_CEACAM_D1_like Firs 98.5 7.4E-07 1.6E-11 66.3 8.5 90 422-531 1-91 (92)
278 cd04980 IgV_L_kappa Immunoglob 98.5 1E-06 2.2E-11 67.5 9.1 86 414-520 7-93 (106)
279 cd05718 Ig1_PVR_like First imm 98.5 1.2E-06 2.7E-11 66.0 9.5 37 496-532 60-97 (98)
280 cd05886 Ig1_Nectin-1_like Firs 98.5 1.8E-06 3.9E-11 64.1 10.0 74 23-96 2-98 (99)
281 cd05761 Ig2_Necl-1-4_like Seco 98.5 2.1E-06 4.5E-11 61.8 9.7 68 425-523 2-70 (82)
282 cd05712 Ig_Siglec_N Immunoglob 98.5 1.2E-06 2.6E-11 68.5 9.0 74 11-84 4-102 (119)
283 cd05775 Ig_SLAM-CD84_like_N N- 98.5 1.2E-06 2.6E-11 65.5 8.5 91 420-532 2-96 (97)
284 cd05883 Ig2_Necl-2 Second immu 98.5 2.5E-06 5.5E-11 60.0 9.5 76 425-532 2-79 (82)
285 cd07694 Ig2_CD4 Second immunog 98.4 2.1E-06 4.6E-11 60.0 8.7 77 15-97 8-86 (88)
286 cd00098 IgC Immunoglobulin Con 98.4 6.2E-07 1.4E-11 67.2 6.7 68 19-86 11-86 (95)
287 cd04984 IgV_L_lambda Immunoglo 98.4 1.4E-06 3.1E-11 65.5 8.4 82 418-520 2-85 (98)
288 cd05886 Ig1_Nectin-1_like Firs 98.4 7.3E-06 1.6E-10 60.9 11.7 37 496-532 61-98 (99)
289 cd05888 Ig1_Nectin-4_like Frst 98.4 2.3E-06 5.1E-11 64.3 9.0 37 496-532 62-99 (100)
290 cd05846 Ig1_MRC-OX-2_like Firs 98.4 2.3E-06 5E-11 64.1 8.9 76 21-96 1-96 (97)
291 cd05846 Ig1_MRC-OX-2_like Firs 98.4 2.4E-06 5.2E-11 64.0 8.7 39 494-532 57-96 (97)
292 cd05887 Ig1_Nectin-3_like Firs 98.4 3.4E-06 7.4E-11 61.9 9.0 75 22-96 1-95 (96)
293 cd05901 Ig_Versican Immunoglob 98.4 1E-05 2.2E-10 61.4 11.5 38 496-533 77-114 (117)
294 cd05901 Ig_Versican Immunoglob 98.4 8.7E-06 1.9E-10 61.7 11.2 77 21-97 2-114 (117)
295 cd05761 Ig2_Necl-1-4_like Seco 98.4 4E-06 8.6E-11 60.4 8.9 62 24-86 2-69 (82)
296 cd07705 Ig2_Necl-1 Second immu 98.4 5E-06 1.1E-10 59.8 9.4 69 425-523 2-71 (83)
297 cd07700 IgV_CD8_beta Immunoglo 98.3 2.3E-06 5.1E-11 65.4 7.8 68 16-83 1-93 (107)
298 cd05716 Ig_pIgR Immunoglobulin 98.3 2E-06 4.3E-11 64.8 7.3 69 16-84 2-86 (98)
299 cd05715 Ig_P0-like Immunoglobu 98.3 4.5E-06 9.8E-11 65.0 9.5 76 112-187 5-104 (116)
300 cd07705 Ig2_Necl-1 Second immu 98.3 5.8E-06 1.3E-10 59.4 9.1 62 24-86 2-70 (83)
301 cd05720 Ig_CD8_alpha Immunoglo 98.3 2.3E-06 5E-11 64.8 7.3 66 17-82 2-89 (104)
302 cd05887 Ig1_Nectin-3_like Firs 98.3 6.7E-06 1.5E-10 60.4 9.1 38 495-532 57-95 (96)
303 cd05884 Ig2_Necl-3 Second immu 98.3 6.4E-06 1.4E-10 59.1 8.8 69 425-523 2-71 (83)
304 cd04981 IgV_H Immunoglobulin ( 98.3 6.8E-06 1.5E-10 63.8 9.5 73 11-83 2-97 (117)
305 PHA03270 envelope glycoprotein 98.3 0.00017 3.6E-09 66.0 19.0 172 62-254 182-363 (466)
306 cd05902 Ig_Neurocan Immunoglob 98.3 1.8E-05 3.8E-10 60.0 10.7 38 496-533 70-107 (110)
307 cd05755 Ig2_ICAM-1_like Second 98.2 5.9E-06 1.3E-10 60.8 7.7 74 115-188 11-87 (100)
308 cd07698 IgC_MHC_I_alpha3 Class 98.2 6.5E-06 1.4E-10 60.9 8.1 75 6-86 2-84 (93)
309 cd05720 Ig_CD8_alpha Immunoglo 98.2 6.2E-06 1.3E-10 62.5 8.1 86 419-519 3-90 (104)
310 cd05884 Ig2_Necl-3 Second immu 98.2 7.8E-06 1.7E-10 58.6 7.9 63 24-86 2-70 (83)
311 cd07699 IgC_L Immunoglobulin C 98.2 9.4E-06 2E-10 60.8 8.5 76 418-522 13-90 (100)
312 cd07706 IgV_TCR_delta Immunogl 98.2 1E-05 2.2E-10 63.1 9.1 74 111-184 5-93 (116)
313 cd05716 Ig_pIgR Immunoglobulin 98.2 8.3E-06 1.8E-10 61.4 8.2 72 115-186 2-87 (98)
314 cd07700 IgV_CD8_beta Immunoglo 98.2 1.2E-05 2.6E-10 61.5 8.9 88 418-519 2-93 (107)
315 smart00407 IGc1 Immunoglobulin 98.2 2.3E-05 4.9E-10 55.3 9.7 69 424-521 1-71 (75)
316 PHA03270 envelope glycoprotein 98.2 0.0034 7.3E-08 57.9 24.7 167 162-351 181-364 (466)
317 PHA02987 Ig domain OX-2-like p 98.1 2.6E-05 5.7E-10 63.2 9.9 86 114-199 24-123 (189)
318 cd05889 Ig1_DNAM-1_like First 98.1 3.9E-05 8.5E-10 56.4 9.5 73 22-94 1-93 (96)
319 cd07694 Ig2_CD4 Second immunog 98.1 3.4E-05 7.3E-10 54.1 8.6 75 418-533 10-86 (88)
320 cd05768 IgC_CH4 CH4 domain (fo 98.1 2.5E-05 5.4E-10 58.6 8.7 77 419-522 13-92 (102)
321 PHA03271 envelope glycoprotein 98.1 0.0025 5.5E-08 58.2 22.4 174 154-349 198-388 (490)
322 cd07696 IgC_CH3 CH3 domain (th 98.1 3.1E-05 6.6E-10 57.2 8.7 77 417-523 9-88 (96)
323 cd05711 Ig_FcalphaRI Immunoglo 98.1 1.5E-05 3.2E-10 59.0 7.2 62 222-284 11-75 (94)
324 cd07699 IgC_L Immunoglobulin C 98.1 1.5E-05 3.3E-10 59.6 7.3 80 6-85 1-89 (100)
325 cd05772 IgC_SIRP Signal-regula 98.1 5.8E-05 1.3E-09 57.4 10.4 70 15-86 15-93 (111)
326 cd05847 IgC_CH2_IgE CH2 domain 98.1 5.1E-05 1.1E-09 55.8 9.8 75 421-524 13-89 (94)
327 PHA03269 envelope glycoprotein 98.1 0.00062 1.3E-08 63.4 18.4 203 160-385 286-512 (566)
328 PHA03273 envelope glycoprotein 98.1 0.00059 1.3E-08 63.3 18.2 167 62-249 198-376 (486)
329 PF08205 C2-set_2: CD80-like C 98.1 3.9E-05 8.4E-10 56.5 9.0 72 422-523 14-86 (89)
330 PF08205 C2-set_2: CD80-like C 98.1 3.9E-05 8.4E-10 56.5 8.9 66 21-86 14-85 (89)
331 cd05772 IgC_SIRP Signal-regula 98.0 0.00012 2.5E-09 55.8 11.3 76 418-523 17-94 (111)
332 cd05767 IgC_MHC_II_alpha Class 98.0 5.3E-05 1.2E-09 55.6 8.8 76 6-85 1-84 (94)
333 smart00407 IGc1 Immunoglobulin 98.0 6.3E-05 1.4E-09 53.0 8.9 63 23-85 1-71 (75)
334 cd04981 IgV_H Immunoglobulin ( 98.0 4.6E-05 1E-09 59.1 8.9 89 415-519 5-97 (117)
335 cd05889 Ig1_DNAM-1_like First 98.0 6.7E-05 1.5E-09 55.2 9.1 36 496-531 58-94 (96)
336 PHA03273 envelope glycoprotein 98.0 0.00068 1.5E-08 62.9 17.4 160 163-345 198-376 (486)
337 cd00096 Ig Immunoglobulin doma 98.0 3E-05 6.5E-10 54.3 7.3 62 24-85 1-66 (74)
338 cd05769 IgC_TCR_beta T cell re 98.0 7.5E-05 1.6E-09 57.0 9.6 85 415-527 11-98 (115)
339 cd05770 IgC_beta2m Class I maj 98.0 5E-05 1.1E-09 55.5 8.2 67 18-85 12-83 (93)
340 cd05712 Ig_Siglec_N Immunoglob 98.0 0.00011 2.4E-09 57.4 10.7 90 415-520 7-102 (119)
341 cd07698 IgC_MHC_I_alpha3 Class 98.0 7.2E-05 1.6E-09 55.4 9.2 27 422-448 14-42 (93)
342 cd05766 IgC_MHC_II_beta Class 98.0 6E-05 1.3E-09 55.6 8.7 65 19-86 12-84 (94)
343 cd05847 IgC_CH2_IgE CH2 domain 98.0 5.2E-05 1.1E-09 55.7 8.2 77 13-89 6-90 (94)
344 cd05768 IgC_CH4 CH4 domain (fo 98.0 3.6E-05 7.8E-10 57.7 7.2 75 12-86 7-92 (102)
345 PF07654 C1-set: Immunoglobuli 97.9 0.00011 2.4E-09 53.0 9.5 71 421-523 7-79 (83)
346 cd05767 IgC_MHC_II_alpha Class 97.9 0.00024 5.3E-09 52.1 10.8 69 421-521 14-84 (94)
347 cd05770 IgC_beta2m Class I maj 97.9 0.00016 3.5E-09 52.8 9.6 30 420-449 13-44 (93)
348 smart00406 IGv Immunoglobulin 97.9 7.8E-05 1.7E-09 53.8 7.9 23 495-517 59-81 (81)
349 smart00406 IGv Immunoglobulin 97.9 6.5E-05 1.4E-09 54.2 7.5 59 23-81 1-81 (81)
350 PHA03271 envelope glycoprotein 97.9 0.013 2.7E-07 53.9 22.7 170 61-252 206-387 (490)
351 cd07696 IgC_CH3 CH3 domain (th 97.9 9.5E-05 2.1E-09 54.6 7.9 75 12-86 5-87 (96)
352 cd05721 IgV_CTLA-4 Immunoglobu 97.8 0.00012 2.7E-09 54.7 8.2 72 10-81 2-93 (115)
353 PHA03269 envelope glycoprotein 97.8 0.0046 9.9E-08 57.8 19.3 169 61-252 288-471 (566)
354 cd05766 IgC_MHC_II_beta Class 97.8 0.00025 5.4E-09 52.3 9.2 31 420-450 12-44 (94)
355 cd05769 IgC_TCR_beta T cell re 97.8 0.00018 4E-09 54.9 8.2 85 6-90 2-97 (115)
356 cd07697 IgC_TCR_gamma T cell r 97.7 0.00015 3.2E-09 53.4 6.8 71 13-85 8-85 (96)
357 cd00096 Ig Immunoglobulin doma 97.7 0.00025 5.5E-09 49.4 7.9 64 123-186 1-66 (74)
358 cd04985 IgC_CH1 CH1 domain (fi 97.7 0.00069 1.5E-08 50.0 10.2 27 421-447 15-43 (95)
359 cd05719 Ig2_PVR_like Second im 97.7 0.00066 1.4E-08 50.0 10.0 76 422-530 15-91 (95)
360 cd05719 Ig2_PVR_like Second im 97.7 0.00033 7.2E-09 51.6 8.3 77 10-89 4-86 (95)
361 cd07697 IgC_TCR_gamma T cell r 97.6 0.00084 1.8E-08 49.4 9.9 32 419-450 13-46 (96)
362 PF07654 C1-set: Immunoglobuli 97.6 0.00045 9.7E-09 49.9 8.0 64 20-86 7-78 (83)
363 PHA02914 Immunoglobulin-like d 97.6 0.058 1.3E-06 49.4 25.7 72 219-290 272-372 (500)
364 KOG1480|consensus 97.5 1.7E-05 3.7E-10 77.5 -0.3 173 6-189 24-209 (909)
365 cd07692 Ig_CD3_epsilon Immunog 97.5 0.00012 2.5E-09 48.1 3.5 51 19-83 5-55 (65)
366 cd07704 Ig2_Nectin-3-4_like Se 97.5 0.00084 1.8E-08 49.1 8.1 70 12-86 6-85 (97)
367 cd07703 Ig2_Nectin-2_like Seco 97.5 0.00083 1.8E-08 49.3 8.1 69 19-90 13-87 (95)
368 cd07691 Ig_CD3_gamma_delta Imm 97.5 0.00039 8.5E-09 45.9 5.6 60 20-97 5-64 (69)
369 cd04985 IgC_CH1 CH1 domain (fi 97.5 0.0011 2.4E-08 48.8 8.6 65 20-85 15-87 (95)
370 PHA02633 hypothetical protein; 97.4 0.00071 1.5E-08 43.4 5.7 40 61-100 17-56 (63)
371 KOG0613|consensus 97.3 0.00074 1.6E-08 71.0 8.2 215 62-282 278-511 (1205)
372 cd04986 IgC_CH2 CH2 domain (se 97.3 0.0017 3.7E-08 47.8 7.8 77 414-522 11-90 (99)
373 cd04986 IgC_CH2 CH2 domain (se 97.3 0.0011 2.4E-08 48.8 6.4 80 6-86 3-90 (99)
374 cd07703 Ig2_Nectin-2_like Seco 97.2 0.0033 7.1E-08 46.2 8.3 72 121-195 16-91 (95)
375 cd05721 IgV_CTLA-4 Immunoglobu 97.2 0.0049 1.1E-07 46.3 8.9 71 112-182 5-93 (115)
376 KOG0613|consensus 97.1 0.005 1.1E-07 65.1 11.7 254 222-484 240-512 (1205)
377 cd07691 Ig_CD3_gamma_delta Imm 97.1 0.001 2.2E-08 44.0 4.3 23 422-449 6-28 (69)
378 cd07692 Ig_CD3_epsilon Immunog 97.1 0.00098 2.1E-08 43.9 4.1 26 421-449 6-31 (65)
379 cd07689 Ig2_VCAM-1 Second immu 97.1 0.0028 6.2E-08 46.0 6.8 66 18-84 12-85 (99)
380 cd07704 Ig2_Nectin-3-4_like Se 97.0 0.002 4.3E-08 47.1 5.5 70 114-187 10-85 (97)
381 PHA02982 hypothetical protein; 96.9 0.0098 2.1E-07 48.9 9.5 118 15-144 33-172 (251)
382 KOG1480|consensus 96.9 0.00038 8.2E-09 68.5 1.3 175 105-290 24-209 (909)
383 PHA02633 hypothetical protein; 96.9 0.0037 8E-08 40.3 5.1 37 497-533 17-53 (63)
384 PF08204 V-set_CD47: CD47 immu 96.7 0.0051 1.1E-07 47.4 6.1 90 419-533 24-120 (130)
385 cd07689 Ig2_VCAM-1 Second immu 96.4 0.022 4.7E-07 41.5 7.4 65 223-287 12-86 (99)
386 PF08204 V-set_CD47: CD47 immu 96.4 0.0017 3.7E-08 49.9 1.8 78 118-197 25-119 (130)
387 PHA02982 hypothetical protein; 96.0 0.021 4.5E-07 47.1 5.9 90 417-522 34-124 (251)
388 PF11465 Receptor_2B4: Natural 95.9 0.021 4.6E-07 41.7 5.2 84 13-96 5-106 (108)
389 KOG4597|consensus 95.3 0.031 6.6E-07 52.4 5.0 94 410-533 199-292 (560)
390 KOG4597|consensus 95.2 0.033 7.1E-07 52.2 4.9 91 7-97 197-292 (560)
391 PHA03042 CD47-like protein; Pr 95.0 0.094 2E-06 45.6 6.9 70 421-532 30-104 (286)
392 PF02124 Marek_A: Marek's dise 94.7 1.8 3.9E-05 36.9 13.4 103 337-448 7-117 (211)
393 PF07354 Sp38: Zona-pellucida- 94.6 0.052 1.1E-06 47.0 4.4 48 34-84 11-59 (271)
394 PF05790 C2-set: Immunoglobuli 94.3 0.47 1E-05 33.5 8.0 62 25-96 9-78 (80)
395 PF06328 Lep_receptor_Ig: Ig-l 94.2 0.39 8.4E-06 34.8 7.6 69 12-82 9-82 (89)
396 PHA02865 MHC-like TNF binding 94.2 0.18 3.8E-06 46.2 7.1 21 23-43 216-238 (338)
397 PF07354 Sp38: Zona-pellucida- 94.2 0.084 1.8E-06 45.8 4.8 46 435-485 11-57 (271)
398 PF03921 ICAM_N: Intercellular 94.1 0.41 8.8E-06 34.6 7.4 84 9-100 6-89 (91)
399 PHA02914 Immunoglobulin-like d 94.0 5.2 0.00011 37.3 28.8 75 362-448 344-421 (500)
400 PF11465 Receptor_2B4: Natural 94.0 0.55 1.2E-05 34.6 7.8 93 298-399 8-105 (108)
401 PHA03042 CD47-like protein; Pr 94.0 0.33 7.2E-06 42.4 7.9 61 224-288 29-94 (286)
402 PHA03283 envelope glycoprotein 93.9 6.9 0.00015 38.2 18.3 81 364-444 134-234 (542)
403 PF02124 Marek_A: Marek's dise 93.8 3.5 7.6E-05 35.2 13.5 132 242-385 8-159 (211)
404 PHA03189 UL14 tegument protein 93.8 0.54 1.2E-05 41.6 8.9 86 13-98 59-169 (348)
405 PF06328 Lep_receptor_Ig: Ig-l 93.4 0.73 1.6E-05 33.4 7.7 56 417-476 13-73 (89)
406 PHA03052 Hypothetical protein; 92.1 0.37 8E-06 31.8 4.2 36 12-47 3-41 (69)
407 PF06832 BiPBP_C: Penicillin-B 92.0 2 4.4E-05 31.2 8.8 74 5-90 9-86 (89)
408 PHA03281 envelope glycoprotein 91.8 11 0.00024 36.8 15.1 80 365-444 299-395 (642)
409 PF05790 C2-set: Immunoglobuli 91.4 2.6 5.6E-05 29.8 8.3 51 240-297 26-77 (80)
410 PF06832 BiPBP_C: Penicillin-B 89.9 4.1 8.8E-05 29.6 8.6 42 406-448 9-54 (89)
411 PHA02865 MHC-like TNF binding 89.3 2.6 5.6E-05 38.9 8.5 21 424-444 216-238 (338)
412 PHA03282 envelope glycoprotein 89.3 22 0.00047 34.3 15.5 29 491-519 326-354 (540)
413 PF02480 Herpes_gE: Alphaherpe 89.1 3.8 8.2E-05 40.1 10.1 80 365-444 90-190 (439)
414 PHA03282 envelope glycoprotein 87.9 4.4 9.6E-05 38.6 9.1 23 363-385 332-354 (540)
415 PHA03189 UL14 tegument protein 85.6 15 0.00033 33.0 10.6 102 415-530 60-166 (348)
416 PHA03240 envelope glycoprotein 85.6 3.1 6.7E-05 34.8 6.1 104 417-533 33-144 (258)
417 PRK14081 triple tyrosine motif 85.0 51 0.0011 34.2 32.7 284 118-441 303-611 (667)
418 cd05890 Ig2_Nectin-1_like Seco 84.5 3.2 7E-05 30.0 5.0 55 329-388 27-88 (98)
419 cd05890 Ig2_Nectin-1_like Seco 84.3 13 0.00027 27.1 7.9 33 498-530 64-96 (98)
420 PHA03052 Hypothetical protein; 83.9 5.4 0.00012 26.6 5.5 35 415-449 5-42 (69)
421 PHA03283 envelope glycoprotein 83.8 13 0.00028 36.4 10.2 83 60-142 132-234 (542)
422 PF02480 Herpes_gE: Alphaherpe 80.9 2.3 5E-05 41.5 4.5 27 264-290 89-115 (439)
423 PHA03286 envelope glycoprotein 80.5 36 0.00079 32.7 11.6 79 365-444 128-226 (492)
424 PF03921 ICAM_N: Intercellular 79.2 22 0.00047 25.9 8.6 29 414-443 10-39 (91)
425 PHA03286 envelope glycoprotein 75.0 45 0.00098 32.1 10.6 82 61-142 126-226 (492)
426 KOG1026|consensus 72.0 6.2 0.00013 41.0 4.8 158 15-196 201-361 (774)
427 KOG1026|consensus 71.5 5.3 0.00011 41.5 4.2 163 221-401 202-365 (774)
428 PHA03112 IL-18 binding protein 70.5 18 0.0004 28.6 6.0 27 18-44 35-63 (141)
429 PHA03240 envelope glycoprotein 68.7 5.6 0.00012 33.4 3.1 64 15-78 32-121 (258)
430 KOG0200|consensus 67.1 34 0.00075 35.7 9.2 70 365-445 14-84 (609)
431 smart00089 PKD Repeats in poly 66.0 42 0.00092 23.4 7.6 26 421-446 13-39 (79)
432 PF02010 REJ: REJ domain; Int 64.9 5.2 0.00011 39.8 2.8 75 365-443 149-233 (440)
433 PF00801 PKD: PKD domain; Int 63.7 20 0.00043 24.3 4.7 28 418-445 7-34 (69)
434 KOG0200|consensus 58.8 1.7E+02 0.0037 30.7 12.5 112 62-184 13-138 (609)
435 PF11141 DUF2914: Protein of u 58.5 54 0.0012 22.1 7.0 57 242-298 8-65 (66)
436 PHA03281 envelope glycoprotein 56.7 1.2E+02 0.0027 30.1 9.9 82 61-142 297-395 (642)
437 PF00801 PKD: PKD domain; Int 54.2 35 0.00077 23.1 4.7 30 15-44 5-34 (69)
438 PF02010 REJ: REJ domain; Int 53.0 19 0.00041 35.9 4.4 75 365-443 261-340 (440)
439 PF02440 Adeno_E3_CR1: Adenovi 50.5 42 0.00091 22.4 4.2 20 224-247 3-22 (63)
440 PF05955 Herpes_gp2: Equine he 48.5 1.6E+02 0.0034 24.4 10.5 54 334-387 120-179 (226)
441 smart00089 PKD Repeats in poly 47.0 95 0.0021 21.5 7.9 65 18-96 11-78 (79)
442 PHA03112 IL-18 binding protein 41.8 1.5E+02 0.0032 23.7 6.6 26 118-143 36-63 (141)
443 PF11049 KSHV_K1: Glycoprotein 40.8 42 0.00092 22.3 2.9 22 426-449 2-23 (71)
444 PF01688 Herpes_gI: Alphaherpe 40.2 60 0.0013 26.6 4.5 26 61-86 123-148 (161)
445 PF13220 DUF4028: Protein of u 35.1 35 0.00076 21.3 1.8 19 506-524 6-24 (65)
446 PF10572 UPF0556: Uncharacteri 34.7 91 0.002 25.2 4.5 42 478-523 44-85 (158)
447 COG5475 Uncharacterized small 28.0 1.5E+02 0.0032 19.1 3.7 25 62-88 18-42 (60)
448 PHA02935 Hypothetical protein; 26.0 2.5E+02 0.0055 23.5 5.9 51 37-87 68-127 (349)
449 PF03174 CHB_HEX_C: Chitobiase 26.0 1.4E+02 0.003 20.7 4.0 65 12-90 6-70 (75)
450 PF03293 Pox_RNA_pol: Poxvirus 25.5 2.8E+02 0.006 21.9 5.6 19 24-48 68-86 (160)
451 PF09085 Adhes-Ig_like: Adhesi 24.4 1.5E+02 0.0032 21.7 3.7 42 6-49 3-49 (110)
452 PF05955 Herpes_gp2: Equine he 24.0 4.2E+02 0.0092 22.0 13.3 30 427-456 112-142 (226)
453 PF11141 DUF2914: Protein of u 23.6 2.4E+02 0.0052 19.0 8.7 58 338-398 8-65 (66)
454 PF01688 Herpes_gI: Alphaherpe 23.5 2.2E+02 0.0048 23.5 5.1 28 363-390 123-150 (161)
455 PF05566 Pox_vIL-18BP: Orthopo 23.3 2.6E+02 0.0055 21.0 4.8 32 365-396 94-125 (126)
456 PF07705 CARDB: CARDB; InterP 21.1 3.3E+02 0.0072 19.7 7.6 36 12-47 9-49 (101)
457 PHA03290 envelope glycoprotein 21.0 2.2E+02 0.0049 26.4 5.1 39 60-98 127-167 (357)
No 1
>KOG3513|consensus
Probab=100.00 E-value=1.3e-60 Score=470.66 Aligned_cols=494 Identities=27% Similarity=0.401 Sum_probs=380.6
Q ss_pred CccccccCceeee-CCCC--EEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCC-CCCCEEEEEEEE
Q psy16852 7 PRFIEKIQPVVSH-QEQP--ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPT-KEDIGVYTCKAT 82 (579)
Q Consensus 7 p~~~~~p~~~~v~-~G~~--~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~ 82 (579)
|.|..+|.++.+. +-+. +.|.|.+.|+|.|+++|+|||..+...+....... .++|.|.+.. ..|.|.|+|.|+
T Consensus 40 P~f~~q~~~~~~~~~~~~~~v~l~C~A~G~P~Psy~W~kng~~~d~~~~~~~~~~--~G~lvI~~p~~~~d~G~YqC~As 117 (1051)
T KOG3513|consen 40 PVFVEQPNDVIVPFPSDDSSVTLNCEANGNPEPSYRWTKNGTEFDPTEYPRVSVL--GGTLVITNPDAALDQGIYQCFAS 117 (1051)
T ss_pred ceeeecCCceEEecccCCccEEEEEEecCCCCceeEEEECCeecccccccceeee--cCceEecCCcchhhcceeEEEee
Confidence 8888888864443 3333 99999999999999999999999987665555554 4678888777 889999999999
Q ss_pred cCCeeeEE-EEEEEEEecccCCCCCcee-cCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEE-ccCCCCceEEEcC
Q psy16852 83 NIGGVATC-SANLIVLEKEESGEAPKFT-KPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEE-ILPDNGHTMEFNP 158 (579)
Q Consensus 83 ~~~g~~~~-~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~-~~~~~~~~~~~~~ 158 (579)
|..|...+ .+.+..- ..+.|. .....+.+.+|+.+.|.|.. .++|.+.+.|..+..+ +...+..++...
T Consensus 118 N~~Gta~S~~~~l~~~------~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~~~~- 190 (1051)
T KOG3513|consen 118 NKLGTAVSREARLQFG------FIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRVFSQ- 190 (1051)
T ss_pred cccceeeccceeeccc------ccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCcceeEec-
Confidence 99997765 3444432 233444 35567889999999999986 5678899999876544 222232233332
Q ss_pred CCCeEEEEECcCCCCCCeEEEEEEEcCCceeEE---EEEEEEeeccccCCCCccCCCeEeccC-CceeeCCCCeEEEEEE
Q psy16852 159 TTGECVLSISEATPQDEAVYSVKAVNTFGRAEC---RANLVLRKATTIDKPRVLEAPTIVRPL-QALLVPKDSTVTLEAE 234 (579)
Q Consensus 159 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~p~~~~~~-~~~~~~~g~~~~l~C~ 234 (579)
..+.|.|.++..+|.+.|.|.+.+....... ...+.+... ......+|.+.... .......|+.+.|.|.
T Consensus 191 --~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~----~~~~~~~P~i~~~~p~~~~a~~G~~v~LECf 264 (1051)
T KOG3513|consen 191 --ENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSN----NVMREYAPKILVPFPETETALKGQSVKLECF 264 (1051)
T ss_pred --ccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEccc----ccccccCCccccCCCCcccccCCCeEEEEEE
Confidence 2357999999999999999999875432221 222332111 11122344444433 3566888999999999
Q ss_pred EEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeec
Q psy16852 235 YTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVES 314 (579)
Q Consensus 235 ~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~ 314 (579)
+.|+|-|.+.|.|.+.............+.+|.|.+++.+|+|.|.|.|.|..|.......+.|...+.-...+. ....
T Consensus 265 A~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~-d~~~ 343 (1051)
T KOG3513|consen 265 ALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQ-DTEA 343 (1051)
T ss_pred ecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccc-eeEe
Confidence 999999999999987754444445566678999999999999999999999999777777777664432211111 1222
Q ss_pred cccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCe---EEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEE
Q psy16852 315 HPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKE---VTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAV 391 (579)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 391 (579)
.....+.| .|.+.|.|.|.++|.+||.++....+ ..+.. + .|.|.++...|+|+|+|.|+|..|...
T Consensus 344 ~~gs~v~~-----eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~---g--~L~is~v~~~dsg~YQC~A~Nk~G~i~ 413 (1051)
T KOG3513|consen 344 DTGSNVTL-----ECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDD---G--TLIISNVQESDSGVYQCIAENKYGTIY 413 (1051)
T ss_pred cCCCCeEE-----EEEecCCCCCceEEeeCCeecCccCCCcceEEeC---C--EEEEEecccccCeEEEeeeecccceEe
Confidence 33334444 48899999999999999999987766 44432 2 899999999999999999999999999
Q ss_pred EEEEEEEEecccCCCCCeeecCCCc--eeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEE
Q psy16852 392 AAATLAVEEKEESGEAPKFTKPLKP--VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSI 469 (579)
Q Consensus 392 ~~~~l~v~~~~~~~~~p~~~~~~~~--~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i 469 (579)
+++.|.|.. .+|.+...+.. ..+..|..+.|.|.+.+.|.|.++|.+++..+..+.|+.+. ++|+
T Consensus 414 anA~L~V~a-----~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~---edGt----- 480 (1051)
T KOG3513|consen 414 ANAELKVLA-----SAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRIL---EDGT----- 480 (1051)
T ss_pred eeeEEEEEc-----cCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEEC---CCCc-----
Confidence 999999998 46777765544 46888999999999999999999999999876667666653 3333
Q ss_pred ccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEeeCCcccccccCCcccc
Q psy16852 470 SEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIK 549 (579)
Q Consensus 470 ~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~v~~~p~~~~ 549 (579)
|.|.+++.+|+|.|+|.|.|.+|.+..++.|.| .++++|..
T Consensus 481 ------------------------------L~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~V---------kd~tri~~ 521 (1051)
T KOG3513|consen 481 ------------------------------LEISNVTRSDAGKYTCVAENKLGKAESTGNLIV---------KDATRITL 521 (1051)
T ss_pred ------------------------------EEecccCcccCcEEEEEEEcccCccceEEEEEE---------ecCceEEe
Confidence 999999999999999999999999999999996 49999999
Q ss_pred CCCceEEecCCcEEEEEEeccceeecccc
Q psy16852 550 TPETAKVMDGQSVLFTAQVGYSERLEIPL 578 (579)
Q Consensus 550 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~ 578 (579)
.|.+..+..|++++|+|.+.+|+.++++|
T Consensus 522 ~P~~~~v~~g~~v~l~Ce~shD~~ld~~f 550 (1051)
T KOG3513|consen 522 APSNTDVKVGESVTLTCEASHDPSLDITF 550 (1051)
T ss_pred ccchhhhccCceEEEEeecccCCCcceEE
Confidence 99999999999999999999999998876
No 2
>KOG3513|consensus
Probab=100.00 E-value=1.1e-51 Score=407.80 Aligned_cols=462 Identities=22% Similarity=0.282 Sum_probs=351.5
Q ss_pred cccCceeeeCCCCEEEEEEEE-eeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeee-
Q psy16852 11 EKIQPVVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA- 88 (579)
Q Consensus 11 ~~p~~~~v~~G~~~~l~C~~~-~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~- 88 (579)
...+.+.+.+|+.+.|.|... +.|.+.+.|..+...-......+.......+.|.|.++..+|.+.|.|.+.+.....
T Consensus 141 e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~~~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~ 220 (1051)
T KOG3513|consen 141 EERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRVFSQENGNLYFSNVETSDFGNYICSATFPSTQTI 220 (1051)
T ss_pred ccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCcceeEecccceEEEeecchhhcCceEEEEEchhhccc
Confidence 357789999999999999973 456789999887654332322233344456899999999999999999998743211
Q ss_pred --EEEEEEEEEec-ccCCCCCceec-CCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEE
Q psy16852 89 --TCSANLIVLEK-EESGEAPKFTK-PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 164 (579)
Q Consensus 89 --~~~~~~~v~~~-~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (579)
...+.|++... .....+|.+.. .+.......|+.+.|.|.+-|+|-|+|.|.|.++....+ +.... +....
T Consensus 221 v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~-r~~~~----~~~~v 295 (1051)
T KOG3513|consen 221 VQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPR-RATYS----NYGKV 295 (1051)
T ss_pred ccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCc-ceeee----ccccE
Confidence 11233443211 11123444444 333667788999999999999999999999988853322 11111 22358
Q ss_pred EEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEE
Q psy16852 165 LSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVK 244 (579)
Q Consensus 165 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~ 244 (579)
|.|.+++.+|+|.|+|.|.|..|.......+.+. .+|.+...+++..+..|++++|.|.+.|.|.|.++
T Consensus 296 L~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~-----------a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~ 364 (1051)
T KOG3513|consen 296 LKIPNVQYEDAGEYECIAENSRGSATHSGHVTVY-----------APPYWLQKPQDTEADTGSNVTLECKASGKPNPTVK 364 (1051)
T ss_pred EEecccCcCCCeEEEEEEecccccceeeEEEEEe-----------cCchhhcccceeEecCCCCeEEEEEecCCCCCceE
Confidence 9999999999999999999999987777777765 78888889999999999999999999999999999
Q ss_pred EEECCEEeccCce--EEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeeccccCceee
Q psy16852 245 WFKNGKEIVSKDI--ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQW 322 (579)
Q Consensus 245 W~~~~~~i~~~~~--~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~ 322 (579)
|++||.++..... ........|.|.+++..|+|.|.|.|.|..|....++.|.|....+.... .. ..........
T Consensus 365 WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~-~p--~~~~~~a~~g 441 (1051)
T KOG3513|consen 365 WLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPL-NP--VERKVMAVVG 441 (1051)
T ss_pred EeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCC-Cc--cceEEEEEeC
Confidence 9999999985541 23344568999999999999999999999999999999998744221111 00 0000011112
Q ss_pred eecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecc
Q psy16852 323 FIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKE 402 (579)
Q Consensus 323 ~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~ 402 (579)
....+.|...+.|.+.++|.+++..+..+.++.+..++ +|.|.+++.+|+|.|+|.|+|..|.......|.|..
T Consensus 442 ~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edG----tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd-- 515 (1051)
T KOG3513|consen 442 GTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDG----TLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKD-- 515 (1051)
T ss_pred CeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCC----cEEecccCcccCcEEEEEEEcccCccceEEEEEEec--
Confidence 22334588899999999999999977788887776654 799999999999999999999999999999999997
Q ss_pred cCCCCCeeecCCCceeeecCCCeEEEEEEEeeC--CCeEEEeeCCEEcCCCC--CeeEEEcCCCCeEEEEEccccCCCce
Q psy16852 403 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP--TPSICWYRGKEEILPDN--GHTMEFNPTTGECVLSISEATPQDEA 478 (579)
Q Consensus 403 ~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~v~W~~~~~~l~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g 478 (579)
+++++..+.+..+..|+.++|.|.+.-.+ ...|.|.++|..+.... .+....
T Consensus 516 ----~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~-------------------- 571 (1051)
T KOG3513|consen 516 ----ATRITLAPSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEIN-------------------- 571 (1051)
T ss_pred ----CceEEeccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEe--------------------
Confidence 88899889999999999999999987444 44899999999875332 111111
Q ss_pred eEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEeeC
Q psy16852 479 VYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPE 535 (579)
Q Consensus 479 ~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 535 (579)
...+. +.|+|.+++..|+|.|.|.|.-...+..+.+.+.|+.+
T Consensus 572 -------------~~~~~-g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gp 614 (1051)
T KOG3513|consen 572 -------------DGSDS-GRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGP 614 (1051)
T ss_pred -------------CCcCc-cceEEEeeccccCceEEEEEEEeecchhcccceEEecC
Confidence 01111 45999999999999999999998888889999998743
No 3
>KOG4222|consensus
Probab=100.00 E-value=2.5e-44 Score=351.38 Aligned_cols=469 Identities=24% Similarity=0.366 Sum_probs=354.8
Q ss_pred CCcCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEc-----CCCCCCCE
Q psy16852 1 MAEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEII-----NPTKEDIG 75 (579)
Q Consensus 1 ~~~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~-----~~~~~d~G 75 (579)
+++.++|+++.+|.++.+..|++++|.|.+.|.|.|+|+|||+|+.........-++.-..++|.+. .....|.|
T Consensus 26 r~qd~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G 105 (1281)
T KOG4222|consen 26 RAQDQPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHG 105 (1281)
T ss_pred ccccCCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCc
Confidence 3578999999999999999999999999999999999999999975543221111111111223222 22244999
Q ss_pred EEEEEEEcCCeeeEE-EEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEEccCCCCce
Q psy16852 76 VYTCKATNIGGVATC-SANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDNGHT 153 (579)
Q Consensus 76 ~Y~C~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~ 153 (579)
.|+|.+.|..|...+ ...+.+... .-.|...+..+.+..|+.+.|.|.- .++|.+.+.|.|++..+.......
T Consensus 106 ~y~cvasn~~g~avSr~a~L~vavl-----rddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~ 180 (1281)
T KOG4222|consen 106 VYSCVASNRLGEAVSRGASLIVAVL-----RDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPI 180 (1281)
T ss_pred eeEeeecCccceeeecCceEEEEEe-----chhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCcccccccee
Confidence 999999999886544 233333221 3356666677788899999999985 778899999999999876332222
Q ss_pred EEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEE-EEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEE
Q psy16852 154 MEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAEC-RANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLE 232 (579)
Q Consensus 154 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~ 232 (579)
+..- ..+.|.|.+++.+|+|.|.|.+.|..|...+ .+.+.+. .+|.+...+....+..|..+.+.
T Consensus 181 ~~li---sgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~-----------e~P~f~~rp~~~~v~~g~~~~f~ 246 (1281)
T KOG4222|consen 181 IALI---SGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ-----------EKPWFWKRPKDLAVLVGAAAEFD 246 (1281)
T ss_pred EEEe---cCCcEEEeccccCCCceeeeeecccccccccccceeeec-----------cCCccccccccceeecccccccc
Confidence 2111 1247999999999999999999999987654 3455554 78899988888889999999999
Q ss_pred EEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeee
Q psy16852 233 AEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRV 312 (579)
Q Consensus 233 C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~ 312 (579)
|.+.|.|.+.+.|.+++..++...........+|.|.+++..|.|.|.|.+.|..|...++..++|...+.......-.
T Consensus 247 c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq- 325 (1281)
T KOG4222|consen 247 CRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQ- 325 (1281)
T ss_pred cccCCCCCCceeeeccCCCCCccceeeeeccccccccccCCCcccceeeeccccccccccccceEEecCcccccccCcc-
Confidence 9999999999999998888887776666676789999999999999999999999999999999998665432221111
Q ss_pred eccccCceeeeecCeeEEEeeeCCCeEEEEECCEEcc--------CCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEE
Q psy16852 313 ESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMK--------EGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAV 384 (579)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~--------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~ 384 (579)
.........++|.+.|+|+|.+.|.+.|..-. .+.+..+... + +|.|+++...|.|.|.|...
T Consensus 326 -----~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~--g--~L~it~v~~~d~g~Yvcq~~ 396 (1281)
T KOG4222|consen 326 -----KVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPT--G--TLTITNVRQSDEGYYVCQTQ 396 (1281)
T ss_pred -----ccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCC--C--CcccccccccccceEeeccc
Confidence 11111123456889999999999999875321 1222333222 2 79999999999999999998
Q ss_pred cCceeEEEEEEEEEEecccC-CCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCC
Q psy16852 385 NPVGEAVAAATLAVEEKEES-GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463 (579)
Q Consensus 385 n~~g~~~~~~~l~v~~~~~~-~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~ 463 (579)
+..+.......+.+...... ..+|.+...+.+++..++..+.|.|.+.|.|.|.+.|+++|..+.....+...
T Consensus 397 ~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~------ 470 (1281)
T KOG4222|consen 397 TSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQ------ 470 (1281)
T ss_pred ccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhCCCCCCchhhhcccccccCCcccce------
Confidence 88887776666666555444 45677777788888889999999999999999999999998876543322111
Q ss_pred eEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEeeC
Q psy16852 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPE 535 (579)
Q Consensus 464 ~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 535 (579)
...+.|+|.++...|.|.|+|.|.+..|+...++.|.|..+
T Consensus 471 -------------------------------~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~ 511 (1281)
T KOG4222|consen 471 -------------------------------QEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKA 511 (1281)
T ss_pred -------------------------------eeeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhc
Confidence 12345999999999999999999999999999999998644
No 4
>KOG4221|consensus
Probab=100.00 E-value=9.3e-40 Score=321.47 Aligned_cols=458 Identities=22% Similarity=0.329 Sum_probs=343.7
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG 85 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 85 (579)
.+.|...+.+..+..|+++.|.|.+.+.+.+.+.|.+|..++..++++... .++.|.|.++...|.|.|+|.+++..
T Consensus 140 ~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~l---psG~L~I~~~qp~d~g~yrc~vt~g~ 216 (1381)
T KOG4221|consen 140 LADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVL---PSGALEISGLQPSDTGEYRCVVTGGA 216 (1381)
T ss_pred cCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEc---CCCcEEecccccCCCceEEEEEecCC
Confidence 456888999999999999999999999888899999999988877744332 34689999999999999999999865
Q ss_pred e-eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEE
Q psy16852 86 G-VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 164 (579)
Q Consensus 86 g-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (579)
. ..+..+.++|...+.......|...+....+.+|+++.|.|.+.+.|.+.|.|.+++..+..+. .++... +...
T Consensus 217 ~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds-~rivl~---g~~s 292 (1381)
T KOG4221|consen 217 SQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDS-YRIVLV---GGSS 292 (1381)
T ss_pred cCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecc-eEEEEe---cccc
Confidence 3 2345677888754444444456777888889999999999999999999999999999887655 444332 3457
Q ss_pred EEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEE
Q psy16852 165 LSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVK 244 (579)
Q Consensus 165 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~ 244 (579)
|.|.+++..|+|.|+|+|.|.......++.+.|. .+|.+...+....+.++..+.|.|.+.|.|.+.+.
T Consensus 293 lliS~a~~~dSg~YtC~Atn~~D~idasaev~V~-----------a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~ 361 (1381)
T KOG4221|consen 293 LLISNATDDDSGKYTCRATNTNDSIDASAEVTVL-----------APPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVR 361 (1381)
T ss_pred eEEeccccccCceEEEEecCCCcccccceEEEEE-----------cCCCCCCCCcceeeeeccceeEeCCCCCCCcceEE
Confidence 9999999999999999999977777777777776 67888888888889999999999999999999999
Q ss_pred EEECCEEeccCc-eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEecc---------ceeeeeeeeeec
Q psy16852 245 WFKNGKEIVSKD-IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE---------AETVMMDVRVES 314 (579)
Q Consensus 245 W~~~~~~i~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~---------~~~~~l~~~~~~ 314 (579)
|+|||..+..+. .....+.. |.|.-+...|.|.|.|.+.|..|.....+.+.+...+ ..+..+......
T Consensus 362 w~kNgd~~ipsdy~ki~~~~~-lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~ 440 (1381)
T KOG4221|consen 362 WYKNGDRIIPSDYFKIVGGGN-LRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVS 440 (1381)
T ss_pred EEecCcccCcccceEecCCCC-cEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceeccccc
Confidence 999998877665 34444444 8899999999999999999999998877777554321 111122222233
Q ss_pred cccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEE
Q psy16852 315 HPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAA 394 (579)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 394 (579)
.....++|. .+| ..+.+.+.++|+......... +... ..+.+ ..+.+.++...-...++|.|.|..|....+.
T Consensus 441 srfi~~tw~---~p~-~~~g~i~~~~v~~~~~~~~re-r~~~-tss~g-~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~ 513 (1381)
T KOG4221|consen 441 SRFIQLTWR---PPA-QISGNISTYTVFYKVEGDVRE-RLQN-TSSPG-IQVTVQNLSPLTMYFFRVRAKNEAGSGESSA 513 (1381)
T ss_pred ceeEEEeec---Ccc-ccCCCcceEEEEEecCCchhh-hhee-ccCCc-eEEEeeecccceeEEEEEeccCcccCCccCC
Confidence 334455555 456 566677788887543322111 1111 11222 4677777777666677777889999999999
Q ss_pred EEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCC----eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEc
Q psy16852 395 TLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP----SICWYRGKEEILPDNGHTMEFNPTTGECVLSIS 470 (579)
Q Consensus 395 ~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~----~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~ 470 (579)
.|.|...++ +|.. ...+..-.++|.+.+.|++ .++||+...... +....
T Consensus 514 pLkV~t~pE---gp~~--------~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~-~~~~~--------------- 566 (1381)
T KOG4221|consen 514 PLKVTTQPE---GPVQ--------LQAYATSPTTILVTWEPPPFGNGPITGYKLFYSED-DTGKE--------------- 566 (1381)
T ss_pred ceEEecCCC---CCcc--------ccccccCcceEEEEecCCCCCCCCceEEEEEEEcC-CCCce---------------
Confidence 999998654 2211 3445666788999988887 899999655443 11111
Q ss_pred cccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEeeCC
Q psy16852 471 EATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPES 536 (579)
Q Consensus 471 ~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~ 536 (579)
+..+.+...++|..+.+.+...|+|+|.|.+|....+..+.|+...
T Consensus 567 --------------------~~~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tls 612 (1381)
T KOG4221|consen 567 --------------------LRVENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLS 612 (1381)
T ss_pred --------------------EEEecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEecc
Confidence 2223345568899999999999999999999999999998887543
No 5
>KOG4221|consensus
Probab=100.00 E-value=6.6e-39 Score=315.51 Aligned_cols=491 Identities=21% Similarity=0.292 Sum_probs=337.4
Q ss_pred CCCCccccccCceeeeCCCCEEEEEEEEee--CCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCC-----CCCEE
Q psy16852 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGH--PLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTK-----EDIGV 76 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~--~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~-----~d~G~ 76 (579)
+.+-.|+.+|.+. .+|..+.|.|.+... +.+.|.|.+||..+......+.. .-.+++|.|.++.. -|+|.
T Consensus 39 ~~~~~f~~ep~d~--~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~-~LsNgSl~i~~v~~~kh~~~~eg~ 115 (1381)
T KOG4221|consen 39 NTPLQFLLEPSDA--MEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQ-LLSNGSLYISSVLASKHNKVDEGV 115 (1381)
T ss_pred cCcceEEeccccc--ccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHh-hccCCceeEeeecccccccccCce
Confidence 4566788888855 999999999997543 35689999999987654321111 12346788887766 78999
Q ss_pred EEEEEEcC-Ceee-EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceE
Q psy16852 77 YTCKATNI-GGVA-TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTM 154 (579)
Q Consensus 77 Y~C~~~~~-~g~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~ 154 (579)
|+|.|+-. .|.. +..+.+.+. ..+.|...+.+..+..|+++.|.|.+.+.|.+.+.|.++..++..+.+.
T Consensus 116 Yqc~atv~~~gsi~Sr~a~v~~a------~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~-- 187 (1381)
T KOG4221|consen 116 YQCLATVEDVGSILSRTAKVALA------GLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRV-- 187 (1381)
T ss_pred EEEEEEccccceeecceEEEEec------ccCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcE--
Confidence 99999865 3433 334555553 3557777778889999999999999998888899999999988776633
Q ss_pred EEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCcee-EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEE
Q psy16852 155 EFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRA-ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEA 233 (579)
Q Consensus 155 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C 233 (579)
...+. +.|.|.++...|.|.|+|.+.+..-.. ...+.+++.... .+.....|...+....+.+|+.+.|.|
T Consensus 188 i~lps---G~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~-----~~~~~~~fl~~p~~~~v~~g~~v~leC 259 (1381)
T KOG4221|consen 188 IVLPS---GALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDP-----GALNKLVFLDEPSNAVVVEGDDVVLEC 259 (1381)
T ss_pred EEcCC---CcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCc-----ccccceeeecCCCccccccCCcEEEEE
Confidence 33322 369999999999999999999875433 334555554211 122223355566677789999999999
Q ss_pred EEEccCCCeEEEEECCEEeccCceE-EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeee
Q psy16852 234 EYTGTPTPEVKWFKNGKEIVSKDIE-TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRV 312 (579)
Q Consensus 234 ~~~~~p~~~v~W~~~~~~i~~~~~~-~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~ 312 (579)
.+.+.|.|.|.|.+||..|...... .......|.|.+++..|+|.|+|+|.|......+++.+.|.+.++-.-.. -..
T Consensus 260 vvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p-~~l 338 (1381)
T KOG4221|consen 260 VVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAP-TTL 338 (1381)
T ss_pred EecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCC-cce
Confidence 9999999999999999998776522 23445679999999999999999999976667778888887664422111 111
Q ss_pred eccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEE
Q psy16852 313 ESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVA 392 (579)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~ 392 (579)
.......+.| .|.+.|.|.+.+.|+|+|..+..+..+.+.... .|.|..+-..|.|.|+|.++|..|....
T Consensus 339 ~A~e~~die~-----ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~----~lrIlgi~~sdeg~yQcvaen~~G~a~a 409 (1381)
T KOG4221|consen 339 VAHESMDIEF-----ECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGG----NLRILGIVKSDEGFYQCVAENDAGSAQA 409 (1381)
T ss_pred eeeeccceeE-----eCCCCCCCcceEEEEecCcccCcccceEecCCC----CcEEEEEecccchhhhhhhccCcccccc
Confidence 2222334443 478899999999999999998887766664433 2777777889999999999999999998
Q ss_pred EEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEE-----eeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEE
Q psy16852 393 AATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT-----GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467 (579)
Q Consensus 393 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-----g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l 467 (579)
...+.+...+.....+.+-..+....+..-+..-+.|... +.+.+.+.|++........ +.
T Consensus 410 ~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~re---r~----------- 475 (1381)
T KOG4221|consen 410 AAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRE---RL----------- 475 (1381)
T ss_pred hhhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchhh---hh-----------
Confidence 8888665543222222222233333344444445555543 3445577887743222111 00
Q ss_pred EEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEeeCCcccccccCCcc
Q psy16852 468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRF 547 (579)
Q Consensus 468 ~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~v~~~p~~ 547 (579)
+...+..-..++.++...-...++|.|.|..|....+..|+|...+|
T Consensus 476 -----------------------~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pE---------- 522 (1381)
T KOG4221|consen 476 -----------------------QNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPE---------- 522 (1381)
T ss_pred -----------------------eeccCCceEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCC----------
Confidence 11111112355555555555667778899999999999999875433
Q ss_pred ccCCCceEEecCCcEEEEEEeccceee
Q psy16852 548 IKTPETAKVMDGQSVLFTAQVGYSERL 574 (579)
Q Consensus 548 ~~~~~~~~~~~g~~~~l~C~~~~~~~~ 574 (579)
+... +..+...-++|.|...||.
T Consensus 523 ---gp~~-~~a~ats~~ti~v~WepP~ 545 (1381)
T KOG4221|consen 523 ---GPVQ-LQAYATSPTTILVTWEPPP 545 (1381)
T ss_pred ---CCcc-ccccccCcceEEEEecCCC
Confidence 1222 4556677777888665554
No 6
>KOG4222|consensus
Probab=100.00 E-value=1.2e-35 Score=291.11 Aligned_cols=417 Identities=24% Similarity=0.384 Sum_probs=298.6
Q ss_pred CCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCC-eEEEEECcC--CCCCCeEEEE
Q psy16852 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG-ECVLSISEA--TPQDEAVYSV 180 (579)
Q Consensus 104 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~--~~~d~G~Y~C 180 (579)
.+|.++..+....+..|+.++|.|.+.|.|+++|+|||+|............+...++ ..-|.+..- ...|.|.|+|
T Consensus 30 ~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~c 109 (1281)
T KOG4222|consen 30 QPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSC 109 (1281)
T ss_pred CCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEe
Confidence 4677777888888889999999999999999999999999765544332222222222 222222211 1238999999
Q ss_pred EEEcCCceeEE-EEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEE-EEccCCCeEEEEECCEEeccCc--
Q psy16852 181 KAVNTFGRAEC-RANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAE-YTGTPTPEVKWFKNGKEIVSKD-- 256 (579)
Q Consensus 181 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~-~~~~p~~~v~W~~~~~~i~~~~-- 256 (579)
+++|..|...+ ...+.+.. ..-.+...+.+..+..|+.+.|.|. ..+.|.+.+.|.|+|+++....
T Consensus 110 vasn~~g~avSr~a~L~vav----------lrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~ 179 (1281)
T KOG4222|consen 110 VASNRLGEAVSRGASLIVAV----------LRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVP 179 (1281)
T ss_pred eecCccceeeecCceEEEEE----------echhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccce
Confidence 99999987644 33444331 2334445556667888999999995 4578999999999999987333
Q ss_pred eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEE-EEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeC
Q psy16852 257 IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART-SGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKP 335 (579)
Q Consensus 257 ~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~-~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p 335 (579)
......+..|.|.++...|+|.|.|+++|..|.... .+.+.|. +.+.+.-.... ............|.+.|.|
T Consensus 180 ~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~--e~P~f~~rp~~----~~v~~g~~~~f~c~v~GdP 253 (1281)
T KOG4222|consen 180 IIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ--EKPWFWKRPKD----LAVLVGAAAEFDCRVGGDP 253 (1281)
T ss_pred eEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeec--cCCcccccccc----ceeecccccccccccCCCC
Confidence 444455567999999999999999999999987653 3455554 32222211110 0011111133458899999
Q ss_pred CCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCC
Q psy16852 336 TPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLK 415 (579)
Q Consensus 336 ~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~ 415 (579)
.|.+.|.+++..+.... ..+..+.. +|.|.++...|.|.|.|.+.|..|.......+.|+. +|.|...+.
T Consensus 254 ~P~Vrwkk~~~~~P~~r-y~i~~d~q---tl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~a------pP~f~kkp~ 323 (1281)
T KOG4222|consen 254 QPTVRWKKDDPSLPRSR-YSILDDTQ---TLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQA------PPSFGKKPR 323 (1281)
T ss_pred CCceeeeccCCCCCccc-eeeeeccc---cccccccCCCcccceeeeccccccccccccceEEec------CcccccccC
Confidence 99999999777666443 33333322 799999999999999999999999999999999997 888888888
Q ss_pred ceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEc-CCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852 416 PVIAEAQSPATLKATVTGRPTPSICWYRGKEEI-LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD 494 (579)
Q Consensus 416 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 494 (579)
+..+..|..++|.|.+.|.|.|.+.|.+.|... .... ....... ...+...
T Consensus 324 dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~-----------------~p~~~~~-----------r~svs~~ 375 (1281)
T KOG4222|consen 324 DQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSA-----------------SPPSSNG-----------RGSVSPT 375 (1281)
T ss_pred ccccccCceEEeeeecCCCCCcceEEeccCcceecccC-----------------CCCCcCc-----------cceecCC
Confidence 888999999999999999999999999976432 1100 0111111 1112122
Q ss_pred CCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEeeCCcccccccCCccccCCCceEEecCCcEEEEEEeccceee
Q psy16852 495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERL 574 (579)
Q Consensus 495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~ 574 (579)
+ +|+|.+++..|.|.|.|...+..|.......+.+... ..+-.-+|.|...+.+.+.-+|+.+.|.|.+.++|.+
T Consensus 376 g---~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~--~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p 450 (1281)
T KOG4222|consen 376 G---TLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDV--LTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTP 450 (1281)
T ss_pred C---CcccccccccccceEeecccccccccccceeEEEEee--eccCCCCceeeecccccccccCcccccChhhhCCCCC
Confidence 2 5999999999999999999999888777666665421 1111345556677999999999999999999999999
Q ss_pred ccccC
Q psy16852 575 EIPLI 579 (579)
Q Consensus 575 ~~~~~ 579 (579)
.++|.
T Consensus 451 ~i~wl 455 (1281)
T KOG4222|consen 451 NISWL 455 (1281)
T ss_pred Cchhh
Confidence 99873
No 7
>KOG4194|consensus
Probab=99.97 E-value=1.3e-30 Score=239.51 Aligned_cols=280 Identities=25% Similarity=0.403 Sum_probs=225.6
Q ss_pred cCCCCccccccCceeeeCCCCEEEEEEEEe--eCCCeeEEEECCEEecCC-----CCEEE--------EEeCCEEEEEEc
Q psy16852 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEG--HPLPTMTWQKDGTELHAT-----EHYLI--------TTVESVSTLEII 67 (579)
Q Consensus 3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~--~~~~~v~W~~~g~~~~~~-----~~~~~--------~~~~~~~~L~i~ 67 (579)
...+|++..+|+.+....|+.++|+|.+.+ ..+-++.|.++++....- -.+.. ........|++.
T Consensus 500 DspkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~ 579 (873)
T KOG4194|consen 500 DSPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLD 579 (873)
T ss_pred CCCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeee
Confidence 357899999999999999999999999965 233489999987633211 00000 001124689999
Q ss_pred CCCCCCCEEEEEEEEcCCeeeE-EEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEE-
Q psy16852 68 NPTKEDIGVYTCKATNIGGVAT-CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEE- 145 (579)
Q Consensus 68 ~~~~~d~G~Y~C~~~~~~g~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~- 145 (579)
+++-.|+|.|+|.++|..|+.. ..++++|. ..|.|...+.+..+..|+.+.|.|.++|.|.|+|.|.|+++.
T Consensus 580 nVt~td~grYQCVvtN~FGStysqk~KltV~------~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtd 653 (873)
T KOG4194|consen 580 NVTFTDEGRYQCVVTNHFGSTYSQKAKLTVN------QAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTD 653 (873)
T ss_pred eeecccCceEEEEEecccCcchhheeEEEee------ccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCC
Confidence 9999999999999999998664 46788885 477899999999999999999999999999999999998876
Q ss_pred ccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCC
Q psy16852 146 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPK 225 (579)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 225 (579)
.+.....++...++++ .+.|.+++.+|+|.|+|.|.|..|.....+.++|. +.|.+..+..+..+..
T Consensus 654 FPAA~eRRl~Vmpedd--~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~-----------e~p~f~~PL~~~~V~~ 720 (873)
T KOG4194|consen 654 FPAARERRLHVMPEDD--VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVL-----------ETPSFSIPLEDQLVVV 720 (873)
T ss_pred CchhhhheeeecCCCC--EEEEecccccccceeEEeeeccccceeeceEEEEe-----------cCCcccccccceEEEe
Confidence 4433444555444444 68999999999999999999999999999998876 6778888888888999
Q ss_pred CCeEEEEEEEEccCC-CeEEEEECCEEeccCc-eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEec
Q psy16852 226 DSTVTLEAEYTGTPT-PEVKWFKNGKEIVSKD-IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA 301 (579)
Q Consensus 226 g~~~~l~C~~~~~p~-~~v~W~~~~~~i~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~ 301 (579)
|+++.|.|.+.+.|+ |.+.|+|+++++.-.. ....++..-|.+.+...+|+|.|+|...+..|.......+.+...
T Consensus 721 get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~ 798 (873)
T KOG4194|consen 721 GETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQK 798 (873)
T ss_pred cceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeec
Confidence 999999999999877 8999999999886554 344566677889999999999999999999887666555554433
No 8
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.97 E-value=2.7e-28 Score=225.82 Aligned_cols=255 Identities=17% Similarity=0.337 Sum_probs=178.1
Q ss_pred CceeeeCCCCEEEEEEE-----EeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeee
Q psy16852 14 QPVVSHQEQPALFTCKV-----EGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA 88 (579)
Q Consensus 14 ~~~~v~~G~~~~l~C~~-----~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~ 88 (579)
....+.+|+++.|.|.+ .|.|.++++|||+|.... + .........|.|.++..+|+|.|+|.+.|..|..
T Consensus 34 ~~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~--~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~ 108 (326)
T PHA02785 34 ASFMELENEPVILPCPQINTLSSGYNILDILWEKRGADND---R--IIPIDNGSNMLILNPTQSDSGIYICITKNETYCD 108 (326)
T ss_pred chhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc---e--EEEccCCceEEEcccCcccCeEEEEEEECCCcce
Confidence 44567789999999996 678888999999985321 1 1112223468899999999999999999998887
Q ss_pred EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEE-----EEeecCCeEEEEECCEEccCCCCceEEEcCCCCeE
Q psy16852 89 TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKAT-----VTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163 (579)
Q Consensus 89 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~-----~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~ 163 (579)
..++.|.|..... +.+.....+..+.+|..+.|.|. ..+.|++.++|+++.. + ...+ +... ..+
T Consensus 109 ~~s~~L~V~~~~~----~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r--~~~~---~~~ 177 (326)
T PHA02785 109 MMSLNLTIVSVSE----SNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKR--LKQR---TPG 177 (326)
T ss_pred EEEEEEEEEecCC----CccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcc--eEec---CCC
Confidence 7788888875431 22222233455778999999997 2456889999987542 2 2222 2211 124
Q ss_pred EEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCC--
Q psy16852 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP-- 241 (579)
Q Consensus 164 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-- 241 (579)
.|.|.+++.+|+|.|+|.+.|..+.........+...+. ....+|.+. .+....+..|+.+.|.|.+.+.|.+
T Consensus 178 ~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~----~~~~pp~~~-~p~~~~~~~G~~v~L~C~a~g~P~~~~ 252 (326)
T PHA02785 178 IITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVR----DRIIPPTMQ-LPEGVVTSIGSNLTIACRVSLRPPTTD 252 (326)
T ss_pred eEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEe----ccCCCceec-CCCcEEecCCCcEEEEEEEECCCCCCC
Confidence 799999999999999999999887654433222211110 011344433 3355667789999999999987764
Q ss_pred -eEEEEECCEEeccCc------eEEe----------CCeEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852 242 -EVKWFKNGKEIVSKD------IETK----------DNVTKLVIKQTTKKTTGKYEIRVVNEAGE 289 (579)
Q Consensus 242 -~v~W~~~~~~i~~~~------~~~~----------~~~~~l~i~~~~~~d~G~y~C~a~n~~g~ 289 (579)
.+.|++||..+.... .... .....|.|.+++.+|.|.|+|.|.|..+.
T Consensus 253 ~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~ 317 (326)
T PHA02785 253 ADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSI 317 (326)
T ss_pred ceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCc
Confidence 899999999885421 0100 11457999999999999999999998744
No 9
>KOG4194|consensus
Probab=99.96 E-value=1.4e-28 Score=226.37 Aligned_cols=272 Identities=22% Similarity=0.388 Sum_probs=200.7
Q ss_pred CCCeEeccCCceeeCCCCeEEEEEEEEc--cCCCeEEEEECCEEeccCc----------e------EEeCCeEEEEEccc
Q psy16852 210 EAPTIVRPLQALLVPKDSTVTLEAEYTG--TPTPEVKWFKNGKEIVSKD----------I------ETKDNVTKLVIKQT 271 (579)
Q Consensus 210 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~--~p~~~v~W~~~~~~i~~~~----------~------~~~~~~~~l~i~~~ 271 (579)
..|.+...|..+....|+.++|+|.+.+ ..+.++.|.++........ . ........|.+.++
T Consensus 502 pkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nV 581 (873)
T KOG4194|consen 502 PKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNV 581 (873)
T ss_pred CCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeee
Confidence 4566777777778889999999999876 3344899999775333221 0 00112357999999
Q ss_pred CCCCCeEEEEEEEcCCeeeEE-EEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEE-cc
Q psy16852 272 TKKTTGKYEIRVVNEAGEART-SGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTP-MK 349 (579)
Q Consensus 272 ~~~d~G~y~C~a~n~~g~~~~-~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~-~~ 349 (579)
...|+|.|.|+++|..|+..+ .+.++|. ..+.+.-.. .......+....+.|.+.|.|.|.|.|.++|.. .+
T Consensus 582 t~td~grYQCVvtN~FGStysqk~KltV~--~~PsFtktP----~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFP 655 (873)
T KOG4194|consen 582 TFTDEGRYQCVVTNHFGSTYSQKAKLTVN--QAPSFTKTP----EDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFP 655 (873)
T ss_pred ecccCceEEEEEecccCcchhheeEEEee--ccCccccCc----ccceeecccceeeeeeccCCCCcceeehhcCCCCCc
Confidence 999999999999999987543 3344443 333222111 011112223344568999999999999998765 33
Q ss_pred --CCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEE
Q psy16852 350 --EGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATL 427 (579)
Q Consensus 350 --~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l 427 (579)
...+.++..+++ .+.|.+++.+|.|.|+|.|.|.+|..+++++|.|.. .|.+..|..+..+..|+++.|
T Consensus 656 AA~eRRl~Vmpedd---~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e------~p~f~~PL~~~~V~~get~vl 726 (873)
T KOG4194|consen 656 AARERRLHVMPEDD---VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLE------TPSFSIPLEDQLVVVGETLVL 726 (873)
T ss_pred hhhhheeeecCCCC---EEEEecccccccceeEEeeeccccceeeceEEEEec------CCcccccccceEEEecceEEE
Confidence 335566666555 799999999999999999999999999999999997 788888899999999999999
Q ss_pred EEEEEeeCC-CeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecc
Q psy16852 428 KATVTGRPT-PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKIT 506 (579)
Q Consensus 428 ~C~~~g~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~ 506 (579)
.|.+.|.|. |.+.|+|+++++.-..++.. .+ ....|+++...
T Consensus 727 qC~a~~~~a~pr~~W~k~d~pil~t~rh~f----~d---------------------------------~dQllvv~~~~ 769 (873)
T KOG4194|consen 727 QCLAEGAPADPRLEWFKEDKPILITERHTF----PD---------------------------------GDQLLVVKENL 769 (873)
T ss_pred EEecCCCCCCccccccCCCCceEEeecccC----CC---------------------------------CCeEEEEEehh
Confidence 999999888 89999999988754443332 12 22347777778
Q ss_pred cccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 507 RDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 507 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.+|+|.|+|+.+|..|.-.....+.+.
T Consensus 770 ~~daG~yTcem~~~~~~~~~~i~l~~~ 796 (873)
T KOG4194|consen 770 VEDAGIYTCEMSNTLGTERIHICLLVY 796 (873)
T ss_pred hhhcceEEEEEEeeccceeeEEEEEEe
Confidence 888888888888888877776666654
No 10
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.96 E-value=3.6e-27 Score=218.33 Aligned_cols=263 Identities=19% Similarity=0.239 Sum_probs=169.6
Q ss_pred eeCCCCeEEEEEEE-----EccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEE
Q psy16852 222 LVPKDSTVTLEAEY-----TGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSV 296 (579)
Q Consensus 222 ~~~~g~~~~l~C~~-----~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~ 296 (579)
.+.+|+.+.|.|.+ .|.|.+++.|+|+|..... ......+..|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus 37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~--~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L 114 (326)
T PHA02785 37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADNDR--IIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLNL 114 (326)
T ss_pred hhhcCCCEEEECCCccccccCCCCceEEEEECCCccce--EEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEEE
Confidence 35679999999986 6888889999999753211 1122233458899999999999999999999887777777
Q ss_pred EEEeccceeeeeeeeeeccccCceeeeecCeeEE-----EeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEccc
Q psy16852 297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVV-----VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEV 371 (579)
Q Consensus 297 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 371 (579)
.|.......+.. ...+..........+.|. ..+.|++.++|++++. + ...++... .. ..|.|.++
T Consensus 115 ~V~~~~~~~~~~----~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~--~~--~~L~i~~v 184 (326)
T PHA02785 115 TIVSVSESNIDL----ISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQR--TP--GIITIEDV 184 (326)
T ss_pred EEEecCCCccce----eeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEec--CC--CeEEEeec
Confidence 776443211110 001111111111223453 3467889999987642 2 22333221 11 27999999
Q ss_pred CCCCCEEEEEEEEcCceeEEEE----EEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCC---eEEEeeC
Q psy16852 372 FPENAGLYSCTAVNPVGEAVAA----ATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP---SICWYRG 444 (579)
Q Consensus 372 ~~~d~G~Y~C~a~n~~g~~~~~----~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~---~v~W~~~ 444 (579)
+.+|+|.|+|.|.|..|..... +.|.|.. ...+|.+..+ ....+..|+.++|.|.+.|.|.+ .+.|++|
T Consensus 185 ~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~---~~~pp~~~~p-~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kn 260 (326)
T PHA02785 185 RKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRD---RIIPPTMQLP-EGVVTSIGSNLTIACRVSLRPPTTDADVFWISN 260 (326)
T ss_pred ChhhCeEEEEEEEeccCCEEEeEEEEEEEEEec---cCCCceecCC-CcEEecCCCcEEEEEEEECCCCCCCceEEEEEC
Confidence 9999999999999988765433 3444432 1235555433 56677789999999999998874 8999999
Q ss_pred CEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee-eeCCeeEEEEeecccccceeEEEEEEeCCee
Q psy16852 445 KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM-TDGNRSVLLISKITRDQIGDVTCRAENVAGS 523 (579)
Q Consensus 445 ~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 523 (579)
|..+..... ... +.....+..+... .....+.|+|.+++.+|+|.|+|.|.|..|.
T Consensus 261 g~~i~~~~~--------~~~---------------~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~ 317 (326)
T PHA02785 261 GMYYEEDDE--------DGD---------------GRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSI 317 (326)
T ss_pred CEECCCcCC--------CCc---------------eeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCc
Confidence 998854311 000 0011111000000 0112456999999999999999999998853
No 11
>KOG3515|consensus
Probab=99.91 E-value=1.8e-23 Score=203.02 Aligned_cols=483 Identities=16% Similarity=0.212 Sum_probs=283.0
Q ss_pred eeeeCCCCEEEEEEEEeeCC-CeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeee-EEEEE
Q psy16852 16 VVSHQEQPALFTCKVEGHPL-PTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA-TCSAN 93 (579)
Q Consensus 16 ~~v~~G~~~~l~C~~~~~~~-~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~-~~~~~ 93 (579)
..+..|+.|.|.|.+.++|+ ..+.||+.+..+. .++.. ....+|......++.-+.|.|++.|..+.. .....
T Consensus 17 ~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~ 91 (741)
T KOG3515|consen 17 VGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH--GRYAT---IADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMI 91 (741)
T ss_pred hhhccCCcceeeeecCCCCCCcceEEEecCcccc--ccccc---ccCCceeeecchhhhhhhhhhhhcccccCceeccee
Confidence 48999999999999987665 5899999887665 22111 123567777888888899999998874422 22333
Q ss_pred EEEEecccCCCCCceecCCCceEEccCCcEEEEEEE--EeecCCeEEEEECCEEccCCCCceE--E---EcCC-CCeEEE
Q psy16852 94 LIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV--TGRPTPSICWYRGKEEILPDNGHTM--E---FNPT-TGECVL 165 (579)
Q Consensus 94 ~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~~p~~~i~W~~~~~~~~~~~~~~~--~---~~~~-~~~~~l 165 (579)
+.+.. ++.-...........+..+.+.|.. .+.|.+++.|+.++........... . .... .....+
T Consensus 92 l~v~~------~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l 165 (741)
T KOG3515|consen 92 LDVDY------PPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLL 165 (741)
T ss_pred ecccc------CccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccce
Confidence 44432 3333333344455678899999965 4567789999998776443221100 0 1111 223568
Q ss_pred EECcCCCCCCeEEEEEEEcC---CceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCC
Q psy16852 166 SISEATPQDEAVYSVKAVNT---FGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTP 241 (579)
Q Consensus 166 ~i~~~~~~d~G~Y~C~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~ 241 (579)
.+...+.++.|+|+|.+.+. .+.......+.+... .....+........+.+|+.+.|.|.+.+ +|.+
T Consensus 166 ~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~--------~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~ 237 (741)
T KOG3515|consen 166 KQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAP--------CKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQ 237 (741)
T ss_pred eeEEEEecCCceeEcccccccCccccccceeEeecccc--------cccceecchhhcCcccccceEEEEehhhcCCcch
Confidence 88888899999999999884 232222333332210 01111222222256888999999997764 7888
Q ss_pred eEEEEECCEEeccCc-eEEe----CCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeeccc
Q psy16852 242 EVKWFKNGKEIVSKD-IETK----DNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHP 316 (579)
Q Consensus 242 ~v~W~~~~~~i~~~~-~~~~----~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 316 (579)
.++|+++...+.... .... ...+.+.+..-..++.-...|.+.| ... .+..+.+.........+... ..
T Consensus 238 ~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~~--~~~~tav~~~~~~~~Ist~~-~~-- 311 (741)
T KOG3515|consen 238 QQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-LLA--ASQITAVQVKPTAVPISTSD-SG-- 311 (741)
T ss_pred hhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC-ccc--cceeeecccccccccccCcc-cc--
Confidence 999999988776642 1111 1112233333333444567799988 111 11222222111111111000 00
Q ss_pred cCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEEC---CCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEE
Q psy16852 317 TASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQD---TDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAA 393 (579)
Q Consensus 317 ~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 393 (579)
....-......|...++|...+.|+++............... ......+.+......|.|.|+|.+.+.......+
T Consensus 312 -ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~ss 390 (741)
T KOG3515|consen 312 -LSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSS 390 (741)
T ss_pred -cccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccc
Confidence 000111111224466778889999996554433221111111 1112356667778889999999999887544444
Q ss_pred EEEEEEecccCCCCCeee-cCCCceeeecCCCeEEEEEEEeeC-CCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEcc
Q psy16852 394 ATLAVEEKEESGEAPKFT-KPLKPVIAEAQSPATLKATVTGRP-TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISE 471 (579)
Q Consensus 394 ~~l~v~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~g~p-~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~ 471 (579)
..+.+... .+|.+. .........+++.....-.+.+.| .+.+.|.+++.++....+.....
T Consensus 391 s~~~l~~l----~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v------------- 453 (741)
T KOG3515|consen 391 SSFLLPVL----PSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRV------------- 453 (741)
T ss_pred cceecccc----CCchhhhhcccceeeccCccccccCcccCCCcccchhheecceecccccCceEEe-------------
Confidence 43333322 234333 333444555555554443333555 45899999988876554433221
Q ss_pred ccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEeeCCcccccccCCccccCC
Q psy16852 472 ATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTP 551 (579)
Q Consensus 472 ~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~v~~~p~~~~~~ 551 (579)
-.......+.++.+.|.|.|.|+|.|..|.+.....+- +...|.+....
T Consensus 454 ----------------------~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~---------~~~sp~~~~~~ 502 (741)
T KOG3515|consen 454 ----------------------GAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLG---------VHTSPHNHHLQ 502 (741)
T ss_pred ----------------------eccccccccceeeeccCCcceeeeccCCCceeeEEeec---------cccCCcccccc
Confidence 11222244667899999999999999999988777755 45777777666
Q ss_pred CceEEecCCcEEEEEEeccce
Q psy16852 552 ETAKVMDGQSVLFTAQVGYSE 572 (579)
Q Consensus 552 ~~~~~~~g~~~~l~C~~~~~~ 572 (579)
.......|+++.+.|.....+
T Consensus 503 ~~~~~~~~ns~~~~~~q~~~~ 523 (741)
T KOG3515|consen 503 DQVEGATGNSVDGECMQDEQP 523 (741)
T ss_pred cccccCCCCcccceeeccccc
Confidence 666667788899999886544
No 12
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.87 E-value=9.1e-21 Score=163.88 Aligned_cols=163 Identities=16% Similarity=0.203 Sum_probs=119.5
Q ss_pred ccCceeeeCCCCEEEEEEEEeeC-----------CCeeEEEECCEEe--cC-CCC---E--E-EEEeCCEEEEEEcCCCC
Q psy16852 12 KIQPVVSHQEQPALFTCKVEGHP-----------LPTMTWQKDGTEL--HA-TEH---Y--L-ITTVESVSTLEIINPTK 71 (579)
Q Consensus 12 ~p~~~~v~~G~~~~l~C~~~~~~-----------~~~v~W~~~g~~~--~~-~~~---~--~-~~~~~~~~~L~i~~~~~ 71 (579)
.+.++.+.+|+++.|.|.+.+.+ ...+.|+|++... .. +.+ . . .........|.|.+++.
T Consensus 28 ~~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~ 107 (227)
T PHA02826 28 DLTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVIN 107 (227)
T ss_pred CcceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCCh
Confidence 35678999999999999986643 3489999998652 11 111 0 0 01112246899999999
Q ss_pred CCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEE-----eecCCeEEEEECCEEc
Q psy16852 72 EDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT-----GRPTPSICWYRGKEEI 146 (579)
Q Consensus 72 ~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-----~~p~~~i~W~~~~~~~ 146 (579)
+|+|.|+|+|.|..+....++.+.|... ..+..+.+|+.+.|.|.+. +.|.+.|+|||++..+
T Consensus 108 ~DsG~Y~C~a~N~~~~~~~~i~L~V~~~------------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l 175 (227)
T PHA02826 108 IDEGIYICTISSGNICEESTIRLTFDSG------------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIV 175 (227)
T ss_pred HHCEEEEEEEEECCcceEEEEEEEEecC------------CccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEEC
Confidence 9999999999998887777777777321 1234567899999999974 3457899999999998
Q ss_pred cCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeE
Q psy16852 147 LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAE 190 (579)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 190 (579)
..+.+..+. .+...|.|.+++.+|+|.|+|.+....+...
T Consensus 176 ~~~~r~~~~----~~~~~L~I~~V~~~DsG~YtC~a~~~~~g~~ 215 (227)
T PHA02826 176 LYTDRIQLR----NNNSTLVIKSATHDDSGIYTCNLRFNKNSNN 215 (227)
T ss_pred CCCCCEEEe----CCCCEEEECcCCHHhCEEEEEEEEEeECCEE
Confidence 765543332 1234799999999999999999988654433
No 13
>KOG3515|consensus
Probab=99.86 E-value=3.6e-20 Score=180.26 Aligned_cols=505 Identities=14% Similarity=0.126 Sum_probs=289.8
Q ss_pred CcCCCCccccccCceeeeCCCCEEEEEEEE--eeCCCeeEEEECCEEecCCCC--EEEE------EeCCEEEEEEcCCCC
Q psy16852 2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVE--GHPLPTMTWQKDGTELHATEH--YLIT------TVESVSTLEIINPTK 71 (579)
Q Consensus 2 ~~~~~p~~~~~p~~~~v~~G~~~~l~C~~~--~~~~~~v~W~~~g~~~~~~~~--~~~~------~~~~~~~L~i~~~~~ 71 (579)
..+.+|+-.-.........+..+.+.|.+. +.|.+++.|+.+++....... ..+. .......|.+...+.
T Consensus 93 ~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rk 172 (741)
T KOG3515|consen 93 DVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRK 172 (741)
T ss_pred ccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEe
Confidence 345666666666667778899999999764 345668999999876543221 1000 001235688888899
Q ss_pred CCCEEEEEEEEcCCe---eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEEcc
Q psy16852 72 EDIGVYTCKATNIGG---VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEIL 147 (579)
Q Consensus 72 ~d~G~Y~C~~~~~~g---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~ 147 (579)
+|.|.|+|.+.+... ..-....+.+... .....+..........+|+.+.|.|.+ .++|.+.++||++.....
T Consensus 173 a~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~---~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~ 249 (741)
T KOG3515|consen 173 ADNGNYTCPANNRNSPGLSFAKQLTIIVEAP---CKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQS 249 (741)
T ss_pred cCCceeEcccccccCccccccceeEeecccc---cccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccch
Confidence 999999999988532 2222233333211 111122222222456789999999976 467889999999887654
Q ss_pred CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCe-EeccCCceeeCCC
Q psy16852 148 PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPT-IVRPLQALLVPKD 226 (579)
Q Consensus 148 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~-~~~~~~~~~~~~g 226 (579)
.........+...-...+.+..-+.++.-...|.+.|. +.... -+.+. .+|. .........+..|
T Consensus 250 ~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~-~~~~~--~tav~-----------~~~~~~~Ist~~~~ls~g 315 (741)
T KOG3515|consen 250 ESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNL-LAASQ--ITAVQ-----------VKPTAVPISTSDSGLSSG 315 (741)
T ss_pred hhhcccCCCCCCcccccccccccccchhhhhhccccCc-cccce--eeecc-----------cccccccccCcccccccc
Confidence 43111111111111233444444455556778999882 11111 11111 1111 1111222336778
Q ss_pred CeEEEEEEEE-ccCCCeEEEEECCEEeccCc-------eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEE
Q psy16852 227 STVTLEAEYT-GTPTPEVKWFKNGKEIVSKD-------IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298 (579)
Q Consensus 227 ~~~~l~C~~~-~~p~~~v~W~~~~~~i~~~~-------~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v 298 (579)
+...+.|... +.|...+.|+++........ .........+........|.|.|+|.+.+.......+..+.+
T Consensus 316 ~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l 395 (741)
T KOG3515|consen 316 RSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLL 395 (741)
T ss_pred cccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceec
Confidence 9999999655 47777999999654433322 111122235566777788999999999887755555555555
Q ss_pred Eeccceeeeee-eeeeccccCceeeeecCeeEEEeeeC-CCeEEEEECCEEccCCCe--EEEEECCCCeEEEEEcccCCC
Q psy16852 299 TVAEAETVMMD-VRVESHPTASFQWFIHSEPVVVTGKP-TPLVTWSHDGTPMKEGKE--VTIYQDTDGLCKLAISEVFPE 374 (579)
Q Consensus 299 ~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~g~p-~~~i~W~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~ 374 (579)
.+.+.+.+... ......... .....+..+.++| .+.+.|.+.+.++..... +.+..... ...+.++...
T Consensus 396 ~~l~~p~~L~~~~~~v~~~e~----d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~---~~s~~~v~~~ 468 (741)
T KOG3515|consen 396 PVLPSPAFLVRHKTAVVAMEQ----DHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAG---LGSGVNVSRS 468 (741)
T ss_pred cccCCchhhhhcccceeeccC----ccccccCcccCCCcccchhheecceecccccCceEEeecccc---ccccceeeec
Confidence 54443322111 000000000 0011111222444 468999999888766543 22222211 4446668889
Q ss_pred CCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCC
Q psy16852 375 NAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDN 452 (579)
Q Consensus 375 d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~ 452 (579)
|.|.|.|.+.|..|.......+.+.. .|.+.....+.....|+++.+.|.....|.- .+.|.+.+.......
T Consensus 469 d~g~y~~tatns~gg~~~~~~~~~~~------sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~~ 542 (741)
T KOG3515|consen 469 DGGSYGLTATNSPGGAQAYLLLGVHT------SPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQI 542 (741)
T ss_pred cCCcceeeeccCCCceeeEEeecccc------CCcccccccccccCCCCcccceeeccccccchhhhcccccCCCCcccc
Confidence 99999999999999988888877765 4555544455566778889999998876654 789999876542211
Q ss_pred CeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 453 GHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 453 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
.-.. ..-.....+.+.+.....-.++.|.|.+.|..-.+...-.+.+
T Consensus 543 ~~~~---------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~ 589 (741)
T KOG3515|consen 543 DQDA---------------------------------PQQQLMAHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKA 589 (741)
T ss_pred cccc---------------------------------cccccCCccceeecccccccccceEEeecCCCCccccceEEEe
Confidence 0000 0001112233555555556689999999983334555555554
Q ss_pred eeCCcccccccCCccccCCCc-eEEecC-CcEEEEEEeccceeecccc
Q psy16852 533 LPESEVTDVMESPRFIKTPET-AKVMDG-QSVLFTAQVGYSERLEIPL 578 (579)
Q Consensus 533 ~~~~~~~~v~~~p~~~~~~~~-~~~~~g-~~~~l~C~~~~~~~~~~~~ 578 (579)
. .++........ .+...| ..++.+|.|++.|...+.|
T Consensus 590 ~---------s~~~v~~~tp~~~~~~~g~v~as~~~~a~~~~~~~~~~ 628 (741)
T KOG3515|consen 590 Y---------SALIVTVRTPNMYTAQEGCVNASDDCVASGVPSTSFTT 628 (741)
T ss_pred c---------ccccccccCCceeeeccCcccccccceecccccceeec
Confidence 3 23333222222 122222 2889999888888776654
No 14
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.82 E-value=1.6e-18 Score=149.95 Aligned_cols=170 Identities=18% Similarity=0.217 Sum_probs=114.8
Q ss_pred EEEEeccceeeeeeeeeeccccCceeeeecCeeEEEee-eCCCeEEEEECCEEc--cC-CCe-----EEEEECCCCeEEE
Q psy16852 296 VTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTG-KPTPLVTWSHDGTPM--KE-GKE-----VTIYQDTDGLCKL 366 (579)
Q Consensus 296 ~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g-~p~~~i~W~~~~~~~--~~-~~~-----~~~~~~~~~~~~l 366 (579)
..+.+.+|+++.|.|.+...+...+. ... ...+.+.|++++... .. +.+ ............|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~---------~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L 100 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFF---------DKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENL 100 (227)
T ss_pred ceEEecCCCCEEEEcccccccccccc---------ccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeE
Confidence 44668899999999987553321110 001 234567788876531 11 010 0000001122389
Q ss_pred EEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEE-----eeCCCeEEE
Q psy16852 367 AISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT-----GRPTPSICW 441 (579)
Q Consensus 367 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-----g~p~~~v~W 441 (579)
.|.+++.+|+|.|+|.|.|..+....++.|.|.. ++ .+..+.+|+.+.|.|.+. +.|.|+++|
T Consensus 101 ~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~------~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~W 168 (227)
T PHA02826 101 WIGNVINIDEGIYICTISSGNICEESTIRLTFDS------GT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTW 168 (227)
T ss_pred EECCCChHHCEEEEEEEEECCcceEEEEEEEEec------CC------ccceEecCCCEEEEeeCCCCccccCCCceEEE
Confidence 9999999999999999999988888888887742 11 234567899999999985 346789999
Q ss_pred eeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCC
Q psy16852 442 YRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVA 521 (579)
Q Consensus 442 ~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 521 (579)
+|++.++..+.+..+. ...+.|+|.+++.+|+|.|+|.|+...
T Consensus 169 yKng~~l~~~~r~~~~-------------------------------------~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 169 YKNGNIVLYTDRIQLR-------------------------------------NNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred EECCEECCCCCCEEEe-------------------------------------CCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 9999998765543321 123359999999999999999998865
Q ss_pred ee
Q psy16852 522 GS 523 (579)
Q Consensus 522 g~ 523 (579)
+.
T Consensus 212 ~g 213 (227)
T PHA02826 212 NS 213 (227)
T ss_pred CC
Confidence 43
No 15
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.80 E-value=1.3e-18 Score=130.16 Aligned_cols=95 Identities=27% Similarity=0.381 Sum_probs=88.3
Q ss_pred CccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGG 86 (579)
Q Consensus 7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g 86 (579)
|.|...|.++.+..|+.+.|.|.+.|.|.+.+.|+|+|+.+..+.++.+......+.|.|.++..+|+|.|+|.|.|..|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G 80 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG 80 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence 77889999999999999999999999999999999999999877777777777788999999999999999999999999
Q ss_pred eeEEEEEEEEEeccc
Q psy16852 87 VATCSANLIVLEKEE 101 (579)
Q Consensus 87 ~~~~~~~~~v~~~~~ 101 (579)
....++.|.|.++|.
T Consensus 81 ~~~~~~~l~V~~~P~ 95 (98)
T cd05762 81 SRQAQVNLTVVDKPD 95 (98)
T ss_pred ceeEEEEEEEecCCC
Confidence 999999999998764
No 16
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.77 E-value=5.5e-18 Score=126.72 Aligned_cols=91 Identities=23% Similarity=0.307 Sum_probs=78.3
Q ss_pred CeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecc
Q psy16852 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASST 487 (579)
Q Consensus 408 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 487 (579)
|.|...+....+..|+.+.|.|.+.|.|+|++.|+|+|..|..+.++.+..
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~----------------------------- 51 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIEN----------------------------- 51 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEe-----------------------------
Confidence 456667788889999999999999999999999999999997665544432
Q ss_pred eeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 488 ETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 488 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
....+.|+|.++..+|+|.|+|.|.|.+|...+++.|.|.
T Consensus 52 ------~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~ 91 (98)
T cd05762 52 ------TENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVV 91 (98)
T ss_pred ------cCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEe
Confidence 2345669999999999999999999999999999999987
No 17
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.74 E-value=4.1e-17 Score=121.42 Aligned_cols=90 Identities=30% Similarity=0.501 Sum_probs=81.8
Q ss_pred CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI 84 (579)
Q Consensus 5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 84 (579)
+||+|+..|.++.+.+|+.+.|.|.+.|.|.|.+.|+|+|..+....++.+......++|.|.+++.+|+|.|+|.|.|.
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 81 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS 81 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence 79999999999999999999999999999999999999999988777777766666789999999999999999999999
Q ss_pred CeeeEEEEEE
Q psy16852 85 GGVATCSANL 94 (579)
Q Consensus 85 ~g~~~~~~~~ 94 (579)
.|....+..|
T Consensus 82 ~G~~~~~~~l 91 (92)
T cd05747 82 EGKQEAQFTL 91 (92)
T ss_pred CCCEeEEEEe
Confidence 9988776654
No 18
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.72 E-value=6.4e-17 Score=118.61 Aligned_cols=88 Identities=25% Similarity=0.346 Sum_probs=73.3
Q ss_pred CCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS 486 (579)
Q Consensus 407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 486 (579)
+|.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|+|++..+....++.+
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~------------------------------ 50 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM------------------------------ 50 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec------------------------------
Confidence 57777778888999999999999999999999999999877644321110
Q ss_pred ceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 487 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
..+.|.|.+++.+|+|.|+|.|.|..|....++.|.|+
T Consensus 51 ---------~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 88 (88)
T cd05851 51 ---------SGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYVQ 88 (88)
T ss_pred ---------CCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEEC
Confidence 12349999999999999999999999999999999873
No 19
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.71 E-value=8.4e-17 Score=117.96 Aligned_cols=87 Identities=29% Similarity=0.445 Sum_probs=76.4
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG 85 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 85 (579)
||.|...|.+..+.+|+.+.|.|.+.|.|.|.++|+|++..+....++ .. ....|.|.+++.+|+|.|+|.|.|..
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~A~N~~ 76 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEI--SM--SGAVLKIFNIQPEDEGTYECEAENIK 76 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEE--ec--CCCEEEECcCChhhCEEEEEEEEcCC
Confidence 789999999999999999999999999999999999999887654322 22 23589999999999999999999999
Q ss_pred eeeEEEEEEEE
Q psy16852 86 GVATCSANLIV 96 (579)
Q Consensus 86 g~~~~~~~~~v 96 (579)
|....++.|.|
T Consensus 77 G~~~~~~~l~V 87 (88)
T cd05851 77 GKDKHQARVYV 87 (88)
T ss_pred CceEEEEEEEE
Confidence 99888888776
No 20
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.71 E-value=2.4e-16 Score=117.60 Aligned_cols=90 Identities=41% Similarity=0.685 Sum_probs=85.1
Q ss_pred CccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGG 86 (579)
Q Consensus 7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g 86 (579)
|+|...|.++.+.+|+++.|.|.+.+.|.+.+.|+++|..+..+.++.........+|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g 80 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG 80 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence 78999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred eeEEEEEEEE
Q psy16852 87 VATCSANLIV 96 (579)
Q Consensus 87 ~~~~~~~~~v 96 (579)
.....+.|.|
T Consensus 81 ~~~~~~~l~V 90 (90)
T PF07679_consen 81 EATASVNLTV 90 (90)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEC
Confidence 9888887765
No 21
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.69 E-value=5.8e-16 Score=115.19 Aligned_cols=90 Identities=22% Similarity=0.379 Sum_probs=76.1
Q ss_pred CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS 485 (579)
Q Consensus 406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 485 (579)
.||.+...+....+..|+.+.|.|.+.|+|.|.+.|+++|..+..+.++.+.
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~---------------------------- 53 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQIT---------------------------- 53 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEE----------------------------
Confidence 3788888888899999999999999999999999999999888655544432
Q ss_pred cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEE
Q psy16852 486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATL 530 (579)
Q Consensus 486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 530 (579)
.....+.|.|.+++.+|+|.|+|.|.|..|....++.|
T Consensus 54 -------~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 91 (92)
T cd05747 54 -------STEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL 91 (92)
T ss_pred -------EcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEe
Confidence 23344669999999999999999999999999888776
No 22
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.68 E-value=8.2e-16 Score=114.27 Aligned_cols=85 Identities=26% Similarity=0.380 Sum_probs=73.9
Q ss_pred ccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEe-CCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEE
Q psy16852 12 KIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTV-ESVSTLEIINPTKEDIGVYTCKATNIGGVATC 90 (579)
Q Consensus 12 ~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~ 90 (579)
-|+.+.+.+|+++.|.|.+.|.|.|.+.|||+|..+....++..... +...+|.|.+++.+|+|.|+|.|.|..|....
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV 86 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence 36668999999999999999999999999999999987777766544 34578999999999999999999999998888
Q ss_pred EEEEEE
Q psy16852 91 SANLIV 96 (579)
Q Consensus 91 ~~~~~v 96 (579)
.+.|.|
T Consensus 87 ~~~v~v 92 (92)
T cd05737 87 DVTVSV 92 (92)
T ss_pred EEEEeC
Confidence 776654
No 23
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.68 E-value=1.1e-15 Score=114.01 Aligned_cols=90 Identities=33% Similarity=0.612 Sum_probs=78.8
Q ss_pred CeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecc
Q psy16852 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASST 487 (579)
Q Consensus 408 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 487 (579)
|.|...+....+.+|+.+.|.|.+.|.|.|++.|++++..+..+.++.+..
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~----------------------------- 51 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIES----------------------------- 51 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEE-----------------------------
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeec-----------------------------
Confidence 567777788899999999999999999999999999999998777666544
Q ss_pred eeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 488 ETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 488 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
.+..+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 52 ------~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 52 ------DGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLTV 90 (90)
T ss_dssp ------ETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred ------ccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEEC
Confidence 345667999999999999999999999999999999875
No 24
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.67 E-value=1.2e-15 Score=113.36 Aligned_cols=84 Identities=20% Similarity=0.359 Sum_probs=69.3
Q ss_pred CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852 415 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD 494 (579)
Q Consensus 415 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 494 (579)
...++.+|+.+.|.|.+.|.|.|++.|++++..+....++.+... +
T Consensus 9 ~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~----------------------------------~ 54 (92)
T cd05737 9 DVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVE----------------------------------Q 54 (92)
T ss_pred ceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEc----------------------------------C
Confidence 446789999999999999999999999999999876655544320 1
Q ss_pred CCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
+..+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 55 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 92 (92)
T cd05737 55 GKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVSV 92 (92)
T ss_pred CCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEeC
Confidence 22345999999999999999999999999998888864
No 25
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.67 E-value=1.1e-15 Score=111.15 Aligned_cols=82 Identities=18% Similarity=0.347 Sum_probs=67.8
Q ss_pred ceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCC-CeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852 416 PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN-GHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD 494 (579)
Q Consensus 416 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 494 (579)
.+.+..|+.+.|.|.+.|.|.|.+.|++++.++.... ++.+ ...
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~-----------------------------------~~~ 48 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRV-----------------------------------ESY 48 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEE-----------------------------------EEc
Confidence 3568899999999999999999999999999886432 2222 122
Q ss_pred CCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
+..+.|.|.++..+|+|.|+|.|.|..|....++.|+|
T Consensus 49 ~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V 86 (86)
T cd05894 49 KDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV 86 (86)
T ss_pred CCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEEC
Confidence 34567999999999999999999999999999988874
No 26
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.67 E-value=1.2e-15 Score=114.04 Aligned_cols=89 Identities=17% Similarity=0.181 Sum_probs=70.1
Q ss_pred CceeeecCCCeEEEEEEEe-eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852 415 KPVIAEAQSPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT 493 (579)
Q Consensus 415 ~~~~~~~g~~~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 493 (579)
....+.+|+.++|.|.+.| .|+|.+.|+|+|.+|.......+..... . .
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~-------------~-----------------~ 60 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENE-------------S-----------------E 60 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEecc-------------C-----------------c
Confidence 4567889999999999999 8999999999999997544333211000 0 0
Q ss_pred eCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 494 DGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
....+.|.|..+..+|+|.|+|.|.|..|..+.++.|.|+
T Consensus 61 ~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~V~ 100 (101)
T cd04975 61 YRYVSELKLVRLKESEAGTYTFLASNSDASKSLTFELYVN 100 (101)
T ss_pred ceEEEEEEEeecCHhhCeeEEEEEECCCccEEEEEEEEEE
Confidence 0134669999999999999999999999999999999875
No 27
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.66 E-value=2.3e-15 Score=109.58 Aligned_cols=83 Identities=25% Similarity=0.390 Sum_probs=72.3
Q ss_pred CceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCC-CCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEE
Q psy16852 14 QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHAT-EHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSA 92 (579)
Q Consensus 14 ~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~ 92 (579)
+.+.+.+|+.+.|.|.+.|.|.|.+.|++++..+... .++.+......+.|.|.++..+|+|.|+|.|.|..|....++
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~ 82 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASL 82 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence 3578999999999999999999999999999999754 456666656678999999999999999999999999888777
Q ss_pred EEEE
Q psy16852 93 NLIV 96 (579)
Q Consensus 93 ~~~v 96 (579)
.|.|
T Consensus 83 ~l~V 86 (86)
T cd05894 83 FVKV 86 (86)
T ss_pred EEEC
Confidence 7654
No 28
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.65 E-value=3.1e-15 Score=110.73 Aligned_cols=88 Identities=27% Similarity=0.379 Sum_probs=74.6
Q ss_pred cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeee
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA 88 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~ 88 (579)
++.+|.+..+.+|+.+.|.|.+.|.|.|.+.|+++|..+................|.|.+++.+|.|.|+|.|.|..|..
T Consensus 3 ~v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~ 82 (90)
T cd04972 3 PVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQA 82 (90)
T ss_pred cccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCce
Confidence 45677888899999999999999999999999999998865544434444556799999999999999999999999988
Q ss_pred EEEEEEEE
Q psy16852 89 TCSANLIV 96 (579)
Q Consensus 89 ~~~~~~~v 96 (579)
..++.|.|
T Consensus 83 ~~~~~L~v 90 (90)
T cd04972 83 NVSVQVTV 90 (90)
T ss_pred eEEEEEeC
Confidence 88777654
No 29
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.65 E-value=8.9e-16 Score=107.48 Aligned_cols=73 Identities=26% Similarity=0.399 Sum_probs=62.1
Q ss_pred CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEE
Q psy16852 422 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL 501 (579)
Q Consensus 422 g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~ 501 (579)
|+.+.|.|.+.|.|.|+|.|+|++..+..+.++.+.. .+.|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~--------------------------------------~g~L~ 42 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWD--------------------------------------DGSLE 42 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcC--------------------------------------CCEEE
Confidence 6789999999999999999999998876655544311 12499
Q ss_pred EeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 502 ISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 502 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
|.+++.+|+|.|+|.|.|..|....++.|+|
T Consensus 43 I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 43 ILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred ECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 9999999999999999999999999999874
No 30
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.65 E-value=8.5e-16 Score=108.95 Aligned_cols=74 Identities=26% Similarity=0.487 Sum_probs=62.3
Q ss_pred cCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEE
Q psy16852 421 AQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL 500 (579)
Q Consensus 421 ~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l 500 (579)
+|+.+.|.|.+.|.|.|.+.|+|++..+..+.++.+. ..+.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~--------------------------------------~~~~L 42 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVL--------------------------------------SSGTL 42 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEc--------------------------------------cCCeE
Confidence 5899999999999999999999999988654433221 12359
Q ss_pred EEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 501 LISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 501 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 43 ~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 43 RISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred EEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 99999999999999999999999999998874
No 31
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.65 E-value=2.7e-15 Score=112.03 Aligned_cols=83 Identities=22% Similarity=0.344 Sum_probs=70.3
Q ss_pred ceeeeCCCCEEEEEEEEe-eCCCeeEEEECCEEecCCCCEEEEEeC-----CEEEEEEcCCCCCCCEEEEEEEEcCCeee
Q psy16852 15 PVVSHQEQPALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVE-----SVSTLEIINPTKEDIGVYTCKATNIGGVA 88 (579)
Q Consensus 15 ~~~v~~G~~~~l~C~~~~-~~~~~v~W~~~g~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~ 88 (579)
.+.+.+|+++.|.|.+.| .|+|.+.|+|||..+............ ..+.|.|.++..+|+|.|+|.|.|..|..
T Consensus 12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~ 91 (101)
T cd04975 12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91 (101)
T ss_pred eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence 588999999999999999 888999999999999865444332221 25789999999999999999999999998
Q ss_pred EEEEEEEEE
Q psy16852 89 TCSANLIVL 97 (579)
Q Consensus 89 ~~~~~~~v~ 97 (579)
...+.|.|.
T Consensus 92 ~~t~~L~V~ 100 (101)
T cd04975 92 SLTFELYVN 100 (101)
T ss_pred EEEEEEEEE
Confidence 888888774
No 32
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.64 E-value=2.2e-15 Score=113.49 Aligned_cols=91 Identities=26% Similarity=0.499 Sum_probs=73.0
Q ss_pred CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE--CCEEecC-----CCCEEEEEeCCEEEEEEcCCCCCCCEEE
Q psy16852 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK--DGTELHA-----TEHYLITTVESVSTLEIINPTKEDIGVY 77 (579)
Q Consensus 5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~--~g~~~~~-----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 77 (579)
++|++.. |.++.+.+|+.++|.|.+.|.|.|.+.||+ +|..+.. +.++.+.......+|.|.+++.+|+|.|
T Consensus 1 ~~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y 79 (98)
T cd05870 1 VQPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRY 79 (98)
T ss_pred CCCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEE
Confidence 5788754 889999999999999999999999999999 4444432 2244443334567899999999999999
Q ss_pred EEEEEcCCeeeEEEEEEEE
Q psy16852 78 TCKATNIGGVATCSANLIV 96 (579)
Q Consensus 78 ~C~~~~~~g~~~~~~~~~v 96 (579)
+|.|.|..|....++.|.|
T Consensus 80 ~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 80 DCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEeccCCcceeEEEEeC
Confidence 9999999998887776653
No 33
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.64 E-value=2.3e-15 Score=111.13 Aligned_cols=87 Identities=25% Similarity=0.396 Sum_probs=75.1
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG 85 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 85 (579)
||.+...|.+..+.+|+.+.|.|.+.|.|.|.++|++++..+....... .....|.|.+++.+|+|.|+|.|.|..
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~ 76 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS----MSGAVLKIPNIQFEDEGTYECEAENIK 76 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE----EeCCEEEECCCCcccCEEEEEEEEECC
Confidence 6778888999999999999999999999999999999988765543322 234689999999999999999999999
Q ss_pred eeeEEEEEEEE
Q psy16852 86 GVATCSANLIV 96 (579)
Q Consensus 86 g~~~~~~~~~v 96 (579)
|....++.|.|
T Consensus 77 G~~~~~~~l~V 87 (88)
T cd04968 77 GKDTHQGRIYV 87 (88)
T ss_pred CcEEEEEEEEE
Confidence 99888888876
No 34
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.64 E-value=2.5e-15 Score=109.63 Aligned_cols=83 Identities=24% Similarity=0.417 Sum_probs=69.1
Q ss_pred ecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceee
Q psy16852 411 TKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK 490 (579)
Q Consensus 411 ~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~ 490 (579)
...+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+.
T Consensus 3 ~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~--------------------------------- 49 (85)
T cd05728 3 LKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE--------------------------------- 49 (85)
T ss_pred cccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe---------------------------------
Confidence 33456678999999999999999999999999999988654433221
Q ss_pred eeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 491 IMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 491 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
.+.|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 50 ------~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 85 (85)
T cd05728 50 ------AGDLRITKLSLSDSGMYQCVAENKHGTIYASAELAV 85 (85)
T ss_pred ------CCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence 124999999999999999999999999999988874
No 35
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.64 E-value=4.5e-15 Score=109.86 Aligned_cols=86 Identities=23% Similarity=0.365 Sum_probs=68.9
Q ss_pred cCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeee
Q psy16852 412 KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKI 491 (579)
Q Consensus 412 ~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~ 491 (579)
.++....+.+|+.+.|.|.+.|.|.|.+.|+++|..+........
T Consensus 5 ~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~----------------------------------- 49 (90)
T cd04972 5 DGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTL----------------------------------- 49 (90)
T ss_pred cCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEE-----------------------------------
Confidence 344556689999999999999999999999999988754322111
Q ss_pred eeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 492 MTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 492 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
......+.|.|.++..+|.|.|+|.|.|..|....++.|.|
T Consensus 50 ~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~v 90 (90)
T cd04972 50 ETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVTV 90 (90)
T ss_pred EecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEeC
Confidence 11223456999999999999999999999999999998874
No 36
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.64 E-value=4.4e-15 Score=111.62 Aligned_cols=92 Identities=26% Similarity=0.464 Sum_probs=75.2
Q ss_pred CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCC-----CEEEEEeCCEEEEEEcCCCCCCCEEEEE
Q psy16852 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE-----HYLITTVESVSTLEIINPTKEDIGVYTC 79 (579)
Q Consensus 5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~-----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 79 (579)
++|+|...+....+..|+.++|.|.+.|.|.|.++|++++..+.... ++.+......+.|.|.+++.+|+|.|+|
T Consensus 1 ~~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C 80 (97)
T cd05869 1 AKPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLC 80 (97)
T ss_pred CCceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEE
Confidence 46888888888777789999999999999999999999998775332 2223333345789999999999999999
Q ss_pred EEEcCCeeeEEEEEEEE
Q psy16852 80 KATNIGGVATCSANLIV 96 (579)
Q Consensus 80 ~~~~~~g~~~~~~~~~v 96 (579)
.|.|..|....++.|.|
T Consensus 81 ~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 81 TASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEecCCCCeeEEEEEEC
Confidence 99999999888777764
No 37
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.64 E-value=3.5e-15 Score=111.77 Aligned_cols=89 Identities=16% Similarity=0.194 Sum_probs=70.3
Q ss_pred ceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeC
Q psy16852 416 PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDG 495 (579)
Q Consensus 416 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~ 495 (579)
...+..|+.+.|.|.+.|+|+|.+.|+|+|.+|..+.+..+.. .. ++....
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~----------~~-------------------~~~~~~ 62 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTS----------EH-------------------NVQETR 62 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEec----------cc-------------------ccccee
Confidence 4568889999999999999999999999999997654332210 00 000112
Q ss_pred CeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 496 NRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 496 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
..+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|+
T Consensus 63 ~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V~ 100 (101)
T cd05859 63 YVSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQIQ 100 (101)
T ss_pred eccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEEE
Confidence 34679999999999999999999999999999999875
No 38
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.64 E-value=3.7e-15 Score=109.12 Aligned_cols=81 Identities=20% Similarity=0.235 Sum_probs=64.4
Q ss_pred CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCC-CeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEE
Q psy16852 422 QSPATLKATVTGRPTPSICWYRGKEEILPDN-GHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL 500 (579)
Q Consensus 422 g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l 500 (579)
|+.++|.|.+.|.|++.+.|++++..+..+. ++.+.... ..+...+.|
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~-------------------------------~~~~~~s~L 49 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKE-------------------------------VGDEVISTL 49 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEec-------------------------------CCCcEEEEE
Confidence 7899999999999999999999998875432 33322100 001234669
Q ss_pred EEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 501 LISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 501 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.|.++..+|+|.|+|.|.|.+|..+.++.|.|.
T Consensus 50 ~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~ 82 (88)
T cd05735 50 QILPTVREDSGFFSCHAINSYGEDRGIIQLTVQ 82 (88)
T ss_pred EECCCCcccCEEEEEEEEcCCCcceEEEEEEEe
Confidence 999999999999999999999999999999987
No 39
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.63 E-value=3.4e-15 Score=110.59 Aligned_cols=85 Identities=19% Similarity=0.295 Sum_probs=65.8
Q ss_pred CCceeeecCCCeEEEEEEEeeCC-CeEEEee-CCEEcCCCC-CeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceee
Q psy16852 414 LKPVIAEAQSPATLKATVTGRPT-PSICWYR-GKEEILPDN-GHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK 490 (579)
Q Consensus 414 ~~~~~~~~g~~~~l~C~~~g~p~-~~v~W~~-~~~~l~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~ 490 (579)
+....+..|+.++|.|.+.|.|. |.++|++ ++..+.... ++.+..
T Consensus 7 p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~-------------------------------- 54 (96)
T cd05865 7 PSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVR-------------------------------- 54 (96)
T ss_pred CCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEe--------------------------------
Confidence 44556889999999999999995 6999998 676664422 222211
Q ss_pred eeeeCCeeEEEEeecccccceeEEEEEEeCC-eeEEEEEEEEE
Q psy16852 491 IMTDGNRSVLLISKITRDQIGDVTCRAENVA-GSVTCTATLSL 532 (579)
Q Consensus 491 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~~~~~~l~v 532 (579)
.++..++|+|.+++.+|+|.|+|.|.|.. |+..+++.|.|
T Consensus 55 --~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 55 --NDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI 95 (96)
T ss_pred --CCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence 12234679999999999999999999997 89999999876
No 40
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.63 E-value=5.5e-15 Score=110.97 Aligned_cols=92 Identities=29% Similarity=0.470 Sum_probs=75.1
Q ss_pred CCcccccc--CceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 6 APRFIEKI--QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 6 ~p~~~~~p--~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
||.|...+ .++.+..|+.+.|.|.+.|.|.|.+.|+++|..+.... .+.........|+|.+++.+|+|.|+|.|.|
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 79 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGE-EKYSFNEDGSEMTILDVDKLDEAEYTCIAEN 79 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCC-CEEEEeCCCCEEEECCCChhhCEEEEEEEEc
Confidence 56555543 44688999999999999999999999999999887552 2223334456899999999999999999999
Q ss_pred CCeeeEEEEEEEEEe
Q psy16852 84 IGGVATCSANLIVLE 98 (579)
Q Consensus 84 ~~g~~~~~~~~~v~~ 98 (579)
..|.....+.|.|..
T Consensus 80 ~~G~~~~~~~L~V~~ 94 (95)
T cd05730 80 KAGEQEAEIHLKVFA 94 (95)
T ss_pred CCCeEEEEEEEEEEe
Confidence 999988888888863
No 41
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.63 E-value=5e-15 Score=103.96 Aligned_cols=74 Identities=28% Similarity=0.494 Sum_probs=59.1
Q ss_pred eEEEEEEEeeCCCeEEEeeCCEEcCCC-CCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEe
Q psy16852 425 ATLKATVTGRPTPSICWYRGKEEILPD-NGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS 503 (579)
Q Consensus 425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~ 503 (579)
+.|.|.+.|.|.|.+.|+|++..+..+ .++.+..+ ++...+|.|.
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~----------------------------------~~g~~~L~I~ 46 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQD----------------------------------NSGRVTLLIK 46 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEc----------------------------------CCCcEEEEEC
Confidence 579999999999999999999998643 33333220 1112359999
Q ss_pred ecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 504 KITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 504 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
++..+|+|.|+|.|.|..|.+..++.|.|
T Consensus 47 ~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 47 NVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 99999999999999999999999999875
No 42
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.63 E-value=4.3e-15 Score=108.42 Aligned_cols=84 Identities=27% Similarity=0.496 Sum_probs=73.2
Q ss_pred cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeee
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA 88 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~ 88 (579)
|...|.+..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+....++.. . ...|.|.+++.+|+|.|+|.|.|..|..
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~--~--~~~L~i~~~~~~D~G~Y~C~a~N~~G~~ 77 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV--E--AGDLRITKLSLSDSGMYQCVAENKHGTI 77 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE--e--CCEEEEeeCCHHHCEEEEEEEECCCCeE
Confidence 67789999999999999999999999999999999999876654433 2 2579999999999999999999999998
Q ss_pred EEEEEEEE
Q psy16852 89 TCSANLIV 96 (579)
Q Consensus 89 ~~~~~~~v 96 (579)
..++.|.|
T Consensus 78 ~~~~~l~V 85 (85)
T cd05728 78 YASAELAV 85 (85)
T ss_pred EEEEEEEC
Confidence 88777654
No 43
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.62 E-value=3.3e-15 Score=101.52 Aligned_cols=66 Identities=24% Similarity=0.359 Sum_probs=55.8
Q ss_pred eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852 425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK 504 (579)
Q Consensus 425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~ 504 (579)
++|.|.+.|+|.|.++|+|+|..+... ...+.|.|.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~-------------------------------------------~~~~~L~i~~ 37 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK-------------------------------------------HSQHSLQIKD 37 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc-------------------------------------------CCcCEEEECC
Confidence 579999999999999999999988421 1123599999
Q ss_pred cccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 505 ITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 505 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
+..+|+|.|+|.|.|..|....++.++|.
T Consensus 38 v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 38 VTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 99999999999999999988888877763
No 44
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.62 E-value=5.6e-15 Score=110.93 Aligned_cols=83 Identities=24% Similarity=0.390 Sum_probs=67.7
Q ss_pred CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852 415 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD 494 (579)
Q Consensus 415 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 494 (579)
.+..+..|+.+.|.|.+.|.|.|.+.|+++|..+..... ...+ .
T Consensus 11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~-~~~~-----------------------------------~ 54 (95)
T cd05730 11 VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEE-KYSF-----------------------------------N 54 (95)
T ss_pred cceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCC-EEEE-----------------------------------e
Confidence 345688999999999999999999999999988754311 1111 1
Q ss_pred CCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
...+.|+|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 55 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 93 (95)
T cd05730 55 EDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVF 93 (95)
T ss_pred CCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEE
Confidence 223459999999999999999999999999999999985
No 45
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.62 E-value=8.6e-15 Score=110.02 Aligned_cols=96 Identities=23% Similarity=0.345 Sum_probs=70.9
Q ss_pred CCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS 486 (579)
Q Consensus 407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 486 (579)
.|.|...+....+..|+.++|.|.+.|.|.|.++|++++..+...... ..|.|
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~---------------------~~~~~------ 54 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKT---------------------LDGHI------ 54 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccc---------------------cCccE------
Confidence 455655555555666899999999999999999999988766432110 00111
Q ss_pred ceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 487 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
.+..+...+.|.|.+++.+|+|.|+|.|.|..|.+..++.|.|
T Consensus 55 ---~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 55 ---VVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred ---EEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEEC
Confidence 1112234467999999999999999999999999999998875
No 46
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.62 E-value=7.5e-15 Score=104.34 Aligned_cols=74 Identities=23% Similarity=0.444 Sum_probs=61.6
Q ss_pred CeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEe
Q psy16852 424 PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS 503 (579)
Q Consensus 424 ~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~ 503 (579)
.+.|.|.+.|.|.|.+.|+++|..+..+.++.+.. .+..+.|.|.
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~-----------------------------------~~~~~~L~I~ 45 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIET-----------------------------------TASSTSLVIK 45 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEE-----------------------------------CCCeEEEEEC
Confidence 37899999999999999999999986555443322 3345669999
Q ss_pred ecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 504 KITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 504 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 46 ~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 46 NAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 99999999999999999999999988874
No 47
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.61 E-value=8.5e-15 Score=108.07 Aligned_cols=86 Identities=23% Similarity=0.303 Sum_probs=69.1
Q ss_pred CeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecc
Q psy16852 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASST 487 (579)
Q Consensus 408 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 487 (579)
+.+...+....+.+|+.+.|.|.+.|.|.|++.|++++..+.......
T Consensus 2 ~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~-------------------------------- 49 (88)
T cd04968 2 SIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS-------------------------------- 49 (88)
T ss_pred CcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE--------------------------------
Confidence 444555667778999999999999999999999999876553322110
Q ss_pred eeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 488 ETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 488 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
...+.|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 50 -------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 87 (88)
T cd04968 50 -------MSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYV 87 (88)
T ss_pred -------EeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEE
Confidence 12245999999999999999999999999999999886
No 48
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.61 E-value=8e-15 Score=110.60 Aligned_cols=91 Identities=24% Similarity=0.457 Sum_probs=73.8
Q ss_pred CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCC-----CCEEEEEeCCEEEEEEcCCCCCCCEEEEE
Q psy16852 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHAT-----EHYLITTVESVSTLEIINPTKEDIGVYTC 79 (579)
Q Consensus 5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~-----~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 79 (579)
++|+|. .+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+... .++........+.|.|.+++.+|+|.|+|
T Consensus 1 ~~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 79 (96)
T cd05732 1 VQPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDC 79 (96)
T ss_pred CCccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEE
Confidence 468885 577889999999999999999999999999998766532 22333333346799999999999999999
Q ss_pred EEEcCCeeeEEEEEEEE
Q psy16852 80 KATNIGGVATCSANLIV 96 (579)
Q Consensus 80 ~~~~~~g~~~~~~~~~v 96 (579)
.|.|..|....++.|.|
T Consensus 80 ~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 80 EASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEeCCCCcEEEEEEeC
Confidence 99999998887776653
No 49
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.61 E-value=1.3e-14 Score=106.34 Aligned_cols=84 Identities=26% Similarity=0.433 Sum_probs=65.6
Q ss_pred CCCceeeecCCCeEEEEEEEeeCCCeEEEee-CCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeee
Q psy16852 413 PLKPVIAEAQSPATLKATVTGRPTPSICWYR-GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKI 491 (579)
Q Consensus 413 ~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~-~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~ 491 (579)
++.+..+..|+.+.|.|.+.|.|. .+.|++ ++..+..+.++.+.
T Consensus 6 ~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~---------------------------------- 50 (92)
T cd05866 6 SLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQ---------------------------------- 50 (92)
T ss_pred EecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEE----------------------------------
Confidence 346667899999999999999998 999998 46666555444332
Q ss_pred eeeCCeeEEEEeecccccceeEEEEEEeCCeeE-EEEEEEEE
Q psy16852 492 MTDGNRSVLLISKITRDQIGDVTCRAENVAGSV-TCTATLSL 532 (579)
Q Consensus 492 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v 532 (579)
.++..+.|+|.++..+|+|.|+|.|.|..|.. ..++.|.+
T Consensus 51 -~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~ 91 (92)
T cd05866 51 -KEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI 91 (92)
T ss_pred -eCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence 23445679999999999999999999999975 56666654
No 50
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.61 E-value=1.5e-14 Score=105.89 Aligned_cols=87 Identities=24% Similarity=0.474 Sum_probs=71.9
Q ss_pred cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE-CCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCee
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK-DGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGV 87 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~ 87 (579)
+...|.+..+.+|+++.|.|.+.|.|. .+.||+ +|..+..+.++.....+....|.|.++..+|+|.|+|.|.|..|.
T Consensus 3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 81 (92)
T cd05866 3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQ 81 (92)
T ss_pred EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCc
Confidence 345688899999999999999999998 899998 577776666776665566679999999999999999999999886
Q ss_pred e-EEEEEEEE
Q psy16852 88 A-TCSANLIV 96 (579)
Q Consensus 88 ~-~~~~~~~v 96 (579)
. ..++.|.+
T Consensus 82 ~~~~~i~l~~ 91 (92)
T cd05866 82 TQEATVVLEI 91 (92)
T ss_pred EEEEEEEEEE
Confidence 5 44555544
No 51
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.61 E-value=9.2e-15 Score=102.47 Aligned_cols=71 Identities=25% Similarity=0.491 Sum_probs=58.8
Q ss_pred CeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEe
Q psy16852 424 PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS 503 (579)
Q Consensus 424 ~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~ 503 (579)
.+.|.|.+.|.|.|.++|+|+|..+....++.+.. ...|.|.
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~--------------------------------------~~~l~i~ 42 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVK--------------------------------------EHNLQVL 42 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEe--------------------------------------cCCEEEE
Confidence 47899999999999999999999886655443311 1127788
Q ss_pred ecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 504 KITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 504 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
+++.+|+|.|+|.|.|..|+...++.|.|
T Consensus 43 ~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 43 GLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred cCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 99999999999999999999999999874
No 52
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.61 E-value=1.2e-14 Score=107.68 Aligned_cols=85 Identities=22% Similarity=0.398 Sum_probs=68.8
Q ss_pred CCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852 414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT 493 (579)
Q Consensus 414 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 493 (579)
+..+++.+|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+.. .
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~----------------------------------~ 53 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKL----------------------------------E 53 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEE----------------------------------c
Confidence 345678999999999999999999999999998886555443322 0
Q ss_pred eCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 494 DGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
++..+.|.|.+++.+|+|.|+|.|.|.+|....++.|.|
T Consensus 54 ~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~~ 92 (92)
T cd05891 54 QGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVSV 92 (92)
T ss_pred CCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEEC
Confidence 112345999999999999999999999999999888874
No 53
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.61 E-value=1.4e-14 Score=107.23 Aligned_cols=85 Identities=27% Similarity=0.417 Sum_probs=72.4
Q ss_pred ccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeC-CEEEEEEcCCCCCCCEEEEEEEEcCCeeeEE
Q psy16852 12 KIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVE-SVSTLEIINPTKEDIGVYTCKATNIGGVATC 90 (579)
Q Consensus 12 ~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~ 90 (579)
.|..+.+.+|+.+.|.|.+.+.|.|.+.||++|..+....++...... ...+|.|.+++.+|+|.|+|.|.|..|....
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETV 86 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceee
Confidence 467789999999999999999999999999999998777666554433 3468999999999999999999999998887
Q ss_pred EEEEEE
Q psy16852 91 SANLIV 96 (579)
Q Consensus 91 ~~~~~v 96 (579)
++.|.|
T Consensus 87 ~~~v~~ 92 (92)
T cd05891 87 DVTVSV 92 (92)
T ss_pred EEEEEC
Confidence 776653
No 54
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.60 E-value=1e-14 Score=102.33 Aligned_cols=73 Identities=32% Similarity=0.513 Sum_probs=61.2
Q ss_pred EEEEEEEEeeCCCeeEEEECCEEecCC-CCEEEEEeC-CEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852 24 ALFTCKVEGHPLPTMTWQKDGTELHAT-EHYLITTVE-SVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96 (579)
Q Consensus 24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~-~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v 96 (579)
+.|.|.+.|.|.|.|.|+|+|..+... .++.+...+ +..+|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 579999999999999999999998743 455444333 3458999999999999999999999999998887764
No 55
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.60 E-value=6.8e-15 Score=103.00 Aligned_cols=73 Identities=34% Similarity=0.482 Sum_probs=63.5
Q ss_pred CCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852 21 EQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96 (579)
Q Consensus 21 G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v 96 (579)
|+.+.|.|.+.|.|.|.|.|+|++..+..+.++.+. ...+|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~---~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIW---DDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEc---CCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 789999999999999999999999988766665543 2357999999999999999999999999998887764
No 56
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.60 E-value=1.4e-14 Score=101.94 Aligned_cols=74 Identities=32% Similarity=0.512 Sum_probs=58.6
Q ss_pred eEEEEEEEeeCCCeEEEeeCCEEcCCCC-CeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEe
Q psy16852 425 ATLKATVTGRPTPSICWYRGKEEILPDN-GHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS 503 (579)
Q Consensus 425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~ 503 (579)
++|.|.+.|.|.|++.|+|++..+..+. ++.+.. .+.....|.|.
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~----------------------------------~~~~~~~L~I~ 46 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQ----------------------------------DNCGYICLLIQ 46 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEE----------------------------------cCCCEEEEEEC
Confidence 5799999999999999999999886532 222211 00112358999
Q ss_pred ecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 504 KITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 504 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
++..+|+|.|+|.|.|..|....++.|.|
T Consensus 47 ~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 47 GATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 99999999999999999999999999875
No 57
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.60 E-value=1.5e-14 Score=107.22 Aligned_cols=87 Identities=22% Similarity=0.405 Sum_probs=70.0
Q ss_pred ccccCceeeeCCCCEEEEEEEEeeCC-CeeEEEE-CCEEecC-CCCEEEEEe-CCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852 10 IEKIQPVVSHQEQPALFTCKVEGHPL-PTMTWQK-DGTELHA-TEHYLITTV-ESVSTLEIINPTKEDIGVYTCKATNIG 85 (579)
Q Consensus 10 ~~~p~~~~v~~G~~~~l~C~~~~~~~-~~v~W~~-~g~~~~~-~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 85 (579)
...|....+.+|++++|.|.+.|.|. |.++|++ +|..+.. +.++.+... ...++|.|.+++.+|+|.|+|.|.|..
T Consensus 4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~ 83 (96)
T cd05865 4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNED 83 (96)
T ss_pred EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCC
Confidence 45678888999999999999999985 6999998 7876654 334333322 235789999999999999999999986
Q ss_pred -eeeEEEEEEEE
Q psy16852 86 -GVATCSANLIV 96 (579)
Q Consensus 86 -g~~~~~~~~~v 96 (579)
|....++.|.|
T Consensus 84 ~g~~~~s~~l~v 95 (96)
T cd05865 84 EGESEATVNVKI 95 (96)
T ss_pred CCcEEEEEEEEE
Confidence 88888887766
No 58
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.59 E-value=7e-15 Score=104.21 Aligned_cols=74 Identities=35% Similarity=0.605 Sum_probs=63.7
Q ss_pred CCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852 20 QEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96 (579)
Q Consensus 20 ~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v 96 (579)
||+.+.|.|.+.|.|.|.+.|+|+|..+....+.... ...+|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVL---SSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEc---cCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 6999999999999999999999999988765544332 3358999999999999999999999999888877764
No 59
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.59 E-value=1.7e-14 Score=102.80 Aligned_cols=74 Identities=22% Similarity=0.391 Sum_probs=60.8
Q ss_pred CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCe-eEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEE
Q psy16852 422 QSPATLKATVTGRPTPSICWYRGKEEILPDNGH-TMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL 500 (579)
Q Consensus 422 g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l 500 (579)
|+.++|.|.+.|.|.|+++|+++|..+...... .... ..+.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~-------------------------------------~~~~L 43 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV-------------------------------------SSGAL 43 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe-------------------------------------eCCEE
Confidence 788999999999999999999999988543211 1100 12349
Q ss_pred EEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 501 LISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 501 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 44 ~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 44 ILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred EECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 99999999999999999999999999999986
No 60
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.59 E-value=2.7e-14 Score=104.58 Aligned_cols=80 Identities=29% Similarity=0.506 Sum_probs=67.7
Q ss_pred CCCEEEEEEEEeeCCCeeEEEECCEEecCC-CCEEEEEe----CCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEE
Q psy16852 21 EQPALFTCKVEGHPLPTMTWQKDGTELHAT-EHYLITTV----ESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLI 95 (579)
Q Consensus 21 G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~-~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~ 95 (579)
|+.++|.|.+.|.|++.+.|++++..+... .++.+... ...++|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 899999999999999999999999988654 34544321 2247899999999999999999999999999999999
Q ss_pred EEecc
Q psy16852 96 VLEKE 100 (579)
Q Consensus 96 v~~~~ 100 (579)
|.+.|
T Consensus 81 V~~~P 85 (88)
T cd05735 81 VQEPP 85 (88)
T ss_pred EeCCC
Confidence 98764
No 61
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.59 E-value=3.1e-14 Score=101.14 Aligned_cols=74 Identities=32% Similarity=0.513 Sum_probs=66.0
Q ss_pred CEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852 23 PALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96 (579)
Q Consensus 23 ~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v 96 (579)
.+.|.|.+.|.|.|.+.|+|+|..+..+.++.+........|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 47899999999999999999999997777777776677889999999999999999999999999888777654
No 62
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.59 E-value=1.7e-14 Score=102.53 Aligned_cols=75 Identities=21% Similarity=0.334 Sum_probs=60.6
Q ss_pred CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEE
Q psy16852 422 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL 501 (579)
Q Consensus 422 g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~ 501 (579)
|+.++|.|.+.|.|.|+|+|+++|.++......... .. ..+.|.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~----------------------------------~~--~~~~l~ 44 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSR----------------------------------KV--DGDTII 44 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceE----------------------------------Ee--cCCEEE
Confidence 688999999999999999999999988543211100 00 112488
Q ss_pred EeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 502 ISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 502 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
|.+++.+|+|.|+|.|.|.+|...+++.|.|
T Consensus 45 i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 45 FSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred ECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 9999999999999999999999999999987
No 63
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.58 E-value=2.1e-14 Score=108.14 Aligned_cols=95 Identities=21% Similarity=0.355 Sum_probs=68.4
Q ss_pred CCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeC--CEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRG--KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 484 (579)
Q Consensus 407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~--~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~ 484 (579)
+|.+.. +.+.++.+|+.++|.|.+.|.|.|.+.|+++ +..+.... ....++|.
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~---------------------~~~~~r~~--- 56 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGD---------------------KSPDGRIE--- 56 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCC---------------------cCcCceEE---
Confidence 455543 5678899999999999999999999999994 32221110 00011121
Q ss_pred ecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 485 SSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 485 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
+......+.|+|.+++.+|+|.|+|.|.|.+|....++.|.|
T Consensus 57 ------v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 57 ------VKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred ------EeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEeC
Confidence 111223456999999999999999999999999999888864
No 64
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.58 E-value=2.2e-14 Score=108.15 Aligned_cols=95 Identities=22% Similarity=0.322 Sum_probs=70.6
Q ss_pred CCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS 486 (579)
Q Consensus 407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 486 (579)
+|.|. .+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...... ..|.|
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~---------------------~~~~~------ 53 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKS---------------------LDGRI------ 53 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCcc---------------------ccceE------
Confidence 45554 345678899999999999999999999999988655332110 00111
Q ss_pred ceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 487 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
.+......+.|+|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 54 ---~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 54 ---VVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred ---EEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEeC
Confidence 1112234567999999999999999999999999998888864
No 65
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.58 E-value=1.6e-14 Score=98.16 Aligned_cols=66 Identities=26% Similarity=0.360 Sum_probs=57.1
Q ss_pred EEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVL 97 (579)
Q Consensus 24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~ 97 (579)
++|.|.+.|.|.|.++|||||+.+... .....|.|.++..+|+|.|+|.|.|..|..+.+..+.+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 479999999999999999999998632 134689999999999999999999999988777777663
No 66
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.58 E-value=1.8e-14 Score=101.90 Aligned_cols=73 Identities=26% Similarity=0.432 Sum_probs=61.5
Q ss_pred CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEE
Q psy16852 422 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL 501 (579)
Q Consensus 422 g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~ 501 (579)
|+.+.|.|.+.|.|.|++.|++++..+....++.+. ....|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~--------------------------------------~~~~L~ 42 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIW--------------------------------------PDGSLE 42 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEEC--------------------------------------CCCeEE
Confidence 688999999999999999999999988655443321 112399
Q ss_pred EeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 502 ISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 502 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
|.+++.+|+|.|+|.|.|.+|....++.|.|
T Consensus 43 i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 43 ILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred EccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 9999999999999999999999999998875
No 67
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.57 E-value=3.7e-14 Score=101.62 Aligned_cols=76 Identities=28% Similarity=0.468 Sum_probs=66.6
Q ss_pred CCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852 21 EQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96 (579)
Q Consensus 21 G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v 96 (579)
|+++.|.|.+.|.|.|.+.|++++..+....++.+....+...|+|.+++.+|+|.|+|.|.|..|.......+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 7899999999999999999999999887777776666666789999999999999999999999998877665554
No 68
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.57 E-value=4e-14 Score=106.05 Aligned_cols=83 Identities=28% Similarity=0.387 Sum_probs=69.5
Q ss_pred ceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEe------CCEEEEEEcCCCCCCCEEEEEEEEcCCeee
Q psy16852 15 PVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTV------ESVSTLEIINPTKEDIGVYTCKATNIGGVA 88 (579)
Q Consensus 15 ~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~------~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~ 88 (579)
...+..|+.+.|.|.+.|+|.|.+.|+|||.++..+........ ...++|+|.+++.+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 57888999999999999999999999999999876553322211 124689999999999999999999999998
Q ss_pred EEEEEEEEE
Q psy16852 89 TCSANLIVL 97 (579)
Q Consensus 89 ~~~~~~~v~ 97 (579)
+.++.+.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 888888774
No 69
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.57 E-value=3.6e-14 Score=105.38 Aligned_cols=82 Identities=30% Similarity=0.648 Sum_probs=67.4
Q ss_pred CccccccCceeee---CCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCC-CCCCEEEEEEEE
Q psy16852 7 PRFIEKIQPVVSH---QEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPT-KEDIGVYTCKAT 82 (579)
Q Consensus 7 p~~~~~p~~~~v~---~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~ 82 (579)
|.|+..|.++.+. +|+.++|.|.+.|.|.|.|+|+|+|..+......+..... ..|.|.++. .+|+|.|+|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~--g~L~i~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLID--GNLIISNPSEVKDSGRYQCLAT 79 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeC--CeEEEccCCccCcCEEEEEEEE
Confidence 7899999997765 4789999999999999999999999998654444333333 578999875 699999999999
Q ss_pred cCCeeeEE
Q psy16852 83 NIGGVATC 90 (579)
Q Consensus 83 ~~~g~~~~ 90 (579)
|..|...+
T Consensus 80 N~~G~~~S 87 (94)
T cd05848 80 NSIGSILS 87 (94)
T ss_pred cCCCeEEe
Confidence 99997754
No 70
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.57 E-value=3e-14 Score=102.08 Aligned_cols=76 Identities=24% Similarity=0.350 Sum_probs=62.1
Q ss_pred CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEE
Q psy16852 422 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL 501 (579)
Q Consensus 422 g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~ 501 (579)
|+.+.|.|.+.|.|.|.+.|++++..+....++.+. ..+..+.|+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~L~ 45 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSIT-----------------------------------SEGGYGTLT 45 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEE-----------------------------------ECCCEEEEE
Confidence 688999999999999999999998887655443332 123345699
Q ss_pred EeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 502 ISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 502 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
|.+++.+|+|.|+|.|.|..|.....+.+.+
T Consensus 46 I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 46 IRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred ECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 9999999999999999999999888777765
No 71
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.57 E-value=3.2e-14 Score=101.04 Aligned_cols=76 Identities=22% Similarity=0.422 Sum_probs=62.6
Q ss_pred CCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 21 EQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVL 97 (579)
Q Consensus 21 G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~ 97 (579)
|+.++|.|.+.|.|.|.|+|+|+|+.+........... ....|.|.+++.+|+|.|+|.|.|..|....++.|.|+
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~-~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKV-DGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEe-cCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 78999999999999999999999999864322111111 22479999999999999999999999999999888873
No 72
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.57 E-value=2.7e-14 Score=100.34 Aligned_cols=75 Identities=19% Similarity=0.215 Sum_probs=57.9
Q ss_pred EEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecc
Q psy16852 427 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKIT 506 (579)
Q Consensus 427 l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~ 506 (579)
|.|.+.|+|.|+|+|+|+|.+|..+.+....+. . .......+.|.|.++.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~-----------~-------------------~~~~~~~~~L~i~~~~ 52 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIH-----------V-------------------INNTEYHGCLQLDNPT 52 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeE-----------e-------------------ecccceEEEEEECCCC
Confidence 679999999999999999999976654332210 0 0001124569999999
Q ss_pred cccceeEEEEEEeCCeeEEEEEEEE
Q psy16852 507 RDQIGDVTCRAENVAGSVTCTATLS 531 (579)
Q Consensus 507 ~~d~G~Y~C~a~n~~g~~~~~~~l~ 531 (579)
.+|+|.|+|.|.|.+|++..++.+.
T Consensus 53 ~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 53 HLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred cccCEEEEEEEEcCCcccceEEEee
Confidence 9999999999999999998888775
No 73
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.57 E-value=3.1e-14 Score=100.19 Aligned_cols=73 Identities=33% Similarity=0.571 Sum_probs=60.5
Q ss_pred EEEEEEEEeeCCCeeEEEECCEEecCC-CCEEEEEeC-CEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852 24 ALFTCKVEGHPLPTMTWQKDGTELHAT-EHYLITTVE-SVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96 (579)
Q Consensus 24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~-~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v 96 (579)
|+|.|.+.|.|.|.+.|+|++..+... .++.....+ +...|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 579999999999999999999998754 344443332 2347999999999999999999999999998887764
No 74
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.56 E-value=4.8e-14 Score=102.33 Aligned_cols=77 Identities=23% Similarity=0.279 Sum_probs=60.9
Q ss_pred CCeEEEEEEEeeCCC--eEEEeeCCEEcCCCC---CeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCe
Q psy16852 423 SPATLKATVTGRPTP--SICWYRGKEEILPDN---GHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR 497 (579)
Q Consensus 423 ~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~ 497 (579)
+.++|.|.+.|.|.| ++.|+++|..+.... ++.. +......
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~----------------------------------~~~~~~~ 46 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRR----------------------------------MEVKETI 46 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEE----------------------------------EEecceE
Confidence 478999999999988 689999998885432 1100 1111234
Q ss_pred eEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 498 SVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 498 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
+.|+|.+++.+|+|.|+|.|.|..|...+++.|.|.
T Consensus 47 ~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~ 82 (85)
T cd05854 47 GDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVR 82 (85)
T ss_pred eEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEE
Confidence 569999999999999999999999999999999986
No 75
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.56 E-value=4.2e-14 Score=108.06 Aligned_cols=91 Identities=33% Similarity=0.576 Sum_probs=69.5
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCC----CCEEEEEe-CCEEEEEEc--CCCCCCCEEEE
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHAT----EHYLITTV-ESVSTLEII--NPTKEDIGVYT 78 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~----~~~~~~~~-~~~~~L~i~--~~~~~d~G~Y~ 78 (579)
||.|...|.++.+.+|+.++|.|.+.|.|.|.+.|+|+|..+... ........ +....+.|. .++.+|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 789999999999999999999999999999999999999988652 11222222 222233333 44789999999
Q ss_pred EEEEcCCee-eEEEEEEEE
Q psy16852 79 CKATNIGGV-ATCSANLIV 96 (579)
Q Consensus 79 C~~~~~~g~-~~~~~~~~v 96 (579)
|.|.|..|. .+..+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 999999997 555666655
No 76
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.56 E-value=6e-14 Score=100.04 Aligned_cols=74 Identities=30% Similarity=0.517 Sum_probs=62.1
Q ss_pred CCCEEEEEEEEeeCCCeeEEEECCEEecCCCCE-EEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852 21 EQPALFTCKVEGHPLPTMTWQKDGTELHATEHY-LITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96 (579)
Q Consensus 21 G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v 96 (579)
|+.++|.|.+.|.|.|.++|+++|..+...... +... ....|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV--SSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe--eCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 789999999999999999999999988654321 2222 2357999999999999999999999999988888876
No 77
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.56 E-value=3.8e-14 Score=101.57 Aligned_cols=75 Identities=20% Similarity=0.327 Sum_probs=61.8
Q ss_pred CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEE
Q psy16852 422 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL 501 (579)
Q Consensus 422 g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~ 501 (579)
|+.++|.|.+.|.|.|++.|+++|..+....... . .....+.|.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~-~-----------------------------------~~~~~~~L~ 44 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDP-R-----------------------------------RRVDGGTLI 44 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcc-e-----------------------------------EEccCCEEE
Confidence 7889999999999999999999999886543210 0 011234599
Q ss_pred EeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 502 ISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 502 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
|.+++.+|+|.|+|.|.|..|...+++.|.|
T Consensus 45 i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 45 LSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred ECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 9999999999999999999999999999986
No 78
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.55 E-value=6.7e-14 Score=99.00 Aligned_cols=74 Identities=28% Similarity=0.467 Sum_probs=58.3
Q ss_pred eEEEEEEEeeCCCeEEEeeCCEEcCCC-CCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEe
Q psy16852 425 ATLKATVTGRPTPSICWYRGKEEILPD-NGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS 503 (579)
Q Consensus 425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~ 503 (579)
++|.|.+.|.|.|.+.|+|++..+..+ .++.+.. .......|.|.
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~----------------------------------~~~~~~~L~I~ 46 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQ----------------------------------DNCGRICLLIQ 46 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEE----------------------------------cCCCeEEEEEC
Confidence 579999999999999999999988643 2222211 01122359999
Q ss_pred ecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 504 KITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 504 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 47 ~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 47 NANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 99999999999999999999999998874
No 79
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.55 E-value=4.4e-14 Score=98.74 Aligned_cols=70 Identities=24% Similarity=0.391 Sum_probs=57.8
Q ss_pred eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852 425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK 504 (579)
Q Consensus 425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~ 504 (579)
+.|.|.+.|.|.|.+.|+|+|..+..+.++.. ..+.|.|.+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~---------------------------------------~~~~L~I~~ 41 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKK---------------------------------------SGHSLTIKD 41 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEc---------------------------------------CCCEEEECc
Confidence 47999999999999999999999865532111 123599999
Q ss_pred cccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 505 ITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 505 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
++.+|+|.|+|.|.|..|....++.++|.
T Consensus 42 v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 42 VTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 99999999999999999998888888764
No 80
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.55 E-value=6.5e-14 Score=104.03 Aligned_cols=82 Identities=24% Similarity=0.412 Sum_probs=59.5
Q ss_pred CeeecCCCceeee---cCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852 408 PKFTKPLKPVIAE---AQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 484 (579)
Q Consensus 408 p~~~~~~~~~~~~---~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~ 484 (579)
|.|+..+.+..+. +|+.++|.|.+.|.|.|+|+|+|+|..+.....+.+.. .
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~--~----------------------- 56 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSL--I----------------------- 56 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEe--e-----------------------
Confidence 4455555554433 47899999999999999999999999885433222211 0
Q ss_pred ecceeeeeeeCCeeEEEEeecc-cccceeEEEEEEeCCeeEEE
Q psy16852 485 SSTETKIMTDGNRSVLLISKIT-RDQIGDVTCRAENVAGSVTC 526 (579)
Q Consensus 485 ~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~ 526 (579)
.+.|.|.++. .+|+|.|+|.|.|.+|....
T Consensus 57 ------------~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S 87 (94)
T cd05848 57 ------------DGNLIISNPSEVKDSGRYQCLATNSIGSILS 87 (94)
T ss_pred ------------CCeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence 1237888874 68999999999999998743
No 81
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.55 E-value=4.2e-14 Score=97.60 Aligned_cols=69 Identities=20% Similarity=0.334 Sum_probs=55.5
Q ss_pred eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852 425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK 504 (579)
Q Consensus 425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~ 504 (579)
+.|.|.+.|+|.|.+.|+|+|.++....++ ...+.|.|.+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~----------------------------------------~~~~~L~I~~ 40 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF----------------------------------------KRGVHLTIYE 40 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE----------------------------------------ccCCEEEECc
Confidence 478999999999999999999998543211 0123499999
Q ss_pred cccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 505 ITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 505 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
+..+|+|.|+|.|.|..|......+++|.
T Consensus 41 v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 41 VTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 99999999999999999987777766653
No 82
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.55 E-value=2.2e-14 Score=99.99 Aligned_cols=68 Identities=19% Similarity=0.416 Sum_probs=56.8
Q ss_pred eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852 425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK 504 (579)
Q Consensus 425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~ 504 (579)
++|.|.+.|.|.|.+.|+|+|..+....++.+. ..+.|.|.+
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~--------------------------------------~~~~L~I~~ 42 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHIS--------------------------------------PEGYLAIRD 42 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEEC--------------------------------------CCCEEEECc
Confidence 579999999999999999999888655443321 123499999
Q ss_pred cccccceeEEEEEEeCCeeEEEEEEE
Q psy16852 505 ITRDQIGDVTCRAENVAGSVTCTATL 530 (579)
Q Consensus 505 ~~~~d~G~Y~C~a~n~~g~~~~~~~l 530 (579)
++.+|+|.|+|.|.|.+|....++.|
T Consensus 43 ~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 43 VGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CChhhCEEEEEEEECCCCcEEEEEEe
Confidence 99999999999999999999888876
No 83
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.55 E-value=6.2e-14 Score=102.95 Aligned_cols=82 Identities=21% Similarity=0.390 Sum_probs=65.0
Q ss_pred eeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCC
Q psy16852 417 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGN 496 (579)
Q Consensus 417 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~ 496 (579)
..+..|+.+.|.|.+.|.|.|.+.|+|+|..+..+.+... . .....
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~----------~------------------------~~~~~ 49 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGG----------Y------------------------KVRNQ 49 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceee----------e------------------------EEeCC
Confidence 3477899999999999999999999999998865433210 0 00112
Q ss_pred eeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 497 RSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 497 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
...|.|.++..+|+|.|+|.|.|.+|....++.|.|
T Consensus 50 ~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 85 (85)
T cd05857 50 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 85 (85)
T ss_pred ceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEEC
Confidence 335899999999999999999999999999998874
No 84
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.55 E-value=6.4e-14 Score=102.99 Aligned_cols=87 Identities=26% Similarity=0.394 Sum_probs=68.4
Q ss_pred CCccccc--cCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 6 APRFIEK--IQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 6 ~p~~~~~--p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
+|.+... +.+..+.+|++++|.|.+.|. .|.+.|++++..+... +. .......+|.|.+++.+|+|.|+|.|.|
T Consensus 1 ~p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 76 (91)
T cd05740 1 KPVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RL--QLSNDNRTLTFNNVTRSDTGHYQCEASN 76 (91)
T ss_pred CCEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CE--EEeCCCCEEEECcCChhhCEEEEEEEEc
Confidence 3555433 556899999999999999999 8899999999987543 33 3333446899999999999999999999
Q ss_pred CCeeeEE-EEEEEE
Q psy16852 84 IGGVATC-SANLIV 96 (579)
Q Consensus 84 ~~g~~~~-~~~~~v 96 (579)
..|...+ .+.|.|
T Consensus 77 ~~G~~~S~~~~L~V 90 (91)
T cd05740 77 EVSNMTSDPYILNV 90 (91)
T ss_pred CCCCEEeeeEEEEe
Confidence 9987554 455554
No 85
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.54 E-value=4.4e-14 Score=101.34 Aligned_cols=78 Identities=21% Similarity=0.460 Sum_probs=65.0
Q ss_pred cCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEE
Q psy16852 13 IQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSA 92 (579)
Q Consensus 13 p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~ 92 (579)
|.+..+.+|+.++|.|.+.+. .+.+.|+|||..+....++.+. + ..|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~--~--~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~ 75 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT--G--EEVQIKDAVPRDSGLYACVTSSPSGSDTTYF 75 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe--C--CEEEECCCChhhCEEEEEEEeCCCCcccEEE
Confidence 577889999999999999885 5689999999999776655442 2 4799999999999999999999888766665
Q ss_pred EEE
Q psy16852 93 NLI 95 (579)
Q Consensus 93 ~~~ 95 (579)
.+.
T Consensus 76 ~v~ 78 (79)
T cd04973 76 SVN 78 (79)
T ss_pred EEe
Confidence 554
No 86
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.54 E-value=1.1e-13 Score=100.48 Aligned_cols=78 Identities=28% Similarity=0.498 Sum_probs=63.9
Q ss_pred CCEEEEEEEEeeCCC--eeEEEECCEEecCC---CCEE-EEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEE
Q psy16852 22 QPALFTCKVEGHPLP--TMTWQKDGTELHAT---EHYL-ITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLI 95 (579)
Q Consensus 22 ~~~~l~C~~~~~~~~--~v~W~~~g~~~~~~---~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~ 95 (579)
+.++|.|.+.|.|.+ .+.|++||..+... .++. .......++|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 578999999999876 68999999988643 2332 22233457999999999999999999999999999999999
Q ss_pred EEec
Q psy16852 96 VLEK 99 (579)
Q Consensus 96 v~~~ 99 (579)
|.++
T Consensus 81 V~~~ 84 (85)
T cd05854 81 VRGP 84 (85)
T ss_pred EECC
Confidence 9753
No 87
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.54 E-value=1.3e-13 Score=105.37 Aligned_cols=96 Identities=27% Similarity=0.385 Sum_probs=75.0
Q ss_pred CCCCccccccCceee----eCCCCEEEEEEEEeeCCCeeEEEECCEEecCC-CCEEEEEe----CCEEEEEEcCCC-CCC
Q psy16852 4 VLAPRFIEKIQPVVS----HQEQPALFTCKVEGHPLPTMTWQKDGTELHAT-EHYLITTV----ESVSTLEIINPT-KED 73 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v----~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~-~~~~~~~~----~~~~~L~i~~~~-~~d 73 (579)
.++|.|...|....+ ..|..++|.|.+.|.|.+.+.|++||..+... .++..... ...+.|+|.+++ .+|
T Consensus 2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D 81 (109)
T cd05773 2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALD 81 (109)
T ss_pred ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCC
Confidence 468988887764222 25689999999999999999999999998643 34432221 124789999997 599
Q ss_pred CEEEEEEEEcCCeeeEEEEEEEEEec
Q psy16852 74 IGVYTCKATNIGGVATCSANLIVLEK 99 (579)
Q Consensus 74 ~G~Y~C~~~~~~g~~~~~~~~~v~~~ 99 (579)
.|.|+|.|.|..|....++.|.+..+
T Consensus 82 ~G~Y~C~A~N~~G~~~~~i~L~~~~~ 107 (109)
T cd05773 82 YALFTCTAHNSLGEDSLDIQLVSTSR 107 (109)
T ss_pred CEEEEEEEEeCCccCcEEEEEEecCC
Confidence 99999999999999988888888754
No 88
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.54 E-value=1.2e-13 Score=102.77 Aligned_cols=83 Identities=28% Similarity=0.477 Sum_probs=67.1
Q ss_pred CCccccccCceeeeCC---CCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCC-CCCCEEEEEEE
Q psy16852 6 APRFIEKIQPVVSHQE---QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPT-KEDIGVYTCKA 81 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G---~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~ 81 (579)
.|.|...|.++.+.+| +.++|.|.+.|.|.+.|+|+++|..+......+..... ..|.|.++. .+|+|.|+|.|
T Consensus 1 ~P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~--g~L~I~~~~~~~D~G~Y~C~A 78 (94)
T cd05850 1 GPVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVA--GNLVINNPQKARDAGSYQCLA 78 (94)
T ss_pred CCeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEEC--CeEEEccCCccCcCEEEEEEE
Confidence 3788899999988777 57999999999999999999999998644333333322 578998865 69999999999
Q ss_pred EcCCeeeEE
Q psy16852 82 TNIGGVATC 90 (579)
Q Consensus 82 ~~~~g~~~~ 90 (579)
.|..|...+
T Consensus 79 ~N~~G~~~s 87 (94)
T cd05850 79 INRCGTVVS 87 (94)
T ss_pred EcCcCcEEE
Confidence 999997765
No 89
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.54 E-value=7.8e-14 Score=96.52 Aligned_cols=69 Identities=26% Similarity=0.510 Sum_probs=54.8
Q ss_pred CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEE
Q psy16852 422 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL 501 (579)
Q Consensus 422 g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~ 501 (579)
|+.++|.|.+.|.|.|.|+|+|++..+....+... ....|.
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~---------------------------------------~~~~L~ 41 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV---------------------------------------GRNVLE 41 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec---------------------------------------CccEEE
Confidence 67899999999999999999999988754332111 112478
Q ss_pred EeecccccceeEEEEEEeCCeeEEEEEEEE
Q psy16852 502 ISKITRDQIGDVTCRAENVAGSVTCTATLS 531 (579)
Q Consensus 502 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 531 (579)
|.++. |+|.|+|.|.|.+|...++++|+
T Consensus 42 i~~~~--d~G~Y~C~A~N~~G~~~~~a~l~ 69 (69)
T cd05739 42 LTNIY--ESANYTCVAISSLGMIEATAQVT 69 (69)
T ss_pred Eeccc--cCeeEEEEEEeCCCEEEEEEEEC
Confidence 88764 78999999999999998888763
No 90
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.54 E-value=9.1e-14 Score=99.39 Aligned_cols=78 Identities=19% Similarity=0.264 Sum_probs=59.3
Q ss_pred EEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecc
Q psy16852 427 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKIT 506 (579)
Q Consensus 427 l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~ 506 (579)
|.|.+.|.|.|+++|+|+|..+..+.+....+.... .......+.|+|.++.
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~----------------------------~~~~~~~~~L~I~~~~ 54 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEV----------------------------TTPTEYHGCLQFDNPT 54 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeec----------------------------ccccccEEEEEECCCC
Confidence 689999999999999999999976654332210000 0012335569999999
Q ss_pred cccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 507 RDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 507 ~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
.+|+|.|+|.|.|.+|.+..++.|..
T Consensus 55 ~~D~G~YtC~A~N~~G~~~~~~~~~~ 80 (81)
T cd04971 55 HVNNGNYTLVASNEYGQDSKSISAHF 80 (81)
T ss_pred cccCeEEEEEEEeCCCCeeeEEEeee
Confidence 99999999999999999998888753
No 91
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.54 E-value=9.6e-14 Score=101.95 Aligned_cols=81 Identities=26% Similarity=0.388 Sum_probs=67.2
Q ss_pred eeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEE-EEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEE
Q psy16852 16 VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYL-ITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANL 94 (579)
Q Consensus 16 ~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~ 94 (579)
..|.+|+.+.|.|.+.|.|.|.+.|+|+|..+....... .........|.|.+++.+|+|.|+|.|.|..|....++.|
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 458899999999999999999999999999987654331 2223345689999999999999999999999998888777
Q ss_pred EE
Q psy16852 95 IV 96 (579)
Q Consensus 95 ~v 96 (579)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 64
No 92
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.54 E-value=4.1e-14 Score=99.14 Aligned_cols=70 Identities=26% Similarity=0.453 Sum_probs=56.7
Q ss_pred eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852 425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK 504 (579)
Q Consensus 425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~ 504 (579)
+.|.|.+.|.|.|.+.|++++..+..+.. .. ....+.|.|.+
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~-~~-------------------------------------~~~~~~L~I~~ 42 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRT-KK-------------------------------------LNNNKTLQLDN 42 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCce-eE-------------------------------------EcCCCEEEEcc
Confidence 47999999999999999999876643211 11 01234599999
Q ss_pred cccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 505 ITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 505 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
++.+|+|.|+|.|.|..|....++.|.|
T Consensus 43 v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 43 VLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred cCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 9999999999999999999999988876
No 93
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.53 E-value=7.7e-14 Score=100.00 Aligned_cols=75 Identities=28% Similarity=0.466 Sum_probs=63.5
Q ss_pred CCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852 21 EQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96 (579)
Q Consensus 21 G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v 96 (579)
|+.++|.|.+.|.|.|.+.|+++|..+...... .........|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD-PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc-ceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 789999999999999999999999988655432 122334478999999999999999999999999988888876
No 94
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.53 E-value=1.3e-13 Score=97.63 Aligned_cols=73 Identities=33% Similarity=0.500 Sum_probs=60.5
Q ss_pred EEEEEEEEeeCCCeeEEEECCEEecCC-CCEEEEEe-CCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852 24 ALFTCKVEGHPLPTMTWQKDGTELHAT-EHYLITTV-ESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96 (579)
Q Consensus 24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~-~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v 96 (579)
++|.|.+.|.|.|.+.|+|+|..+... .++.+... .+..+|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 579999999999999999999998743 34444333 23457999999999999999999999999888877754
No 95
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.53 E-value=1.7e-13 Score=95.97 Aligned_cols=71 Identities=34% Similarity=0.657 Sum_probs=60.3
Q ss_pred CEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852 23 PALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96 (579)
Q Consensus 23 ~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v 96 (579)
.++|.|.+.|.|.|.++|+|+|..+....++..... ..|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~---~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKE---HNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEec---CCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 478999999999999999999998876666554332 45888899999999999999999999888887764
No 96
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.52 E-value=1.5e-13 Score=103.54 Aligned_cols=92 Identities=26% Similarity=0.312 Sum_probs=68.8
Q ss_pred CCeeecCCCceeeecCCCeEEEEEEEeeCCC-eEEEeeCCEEcCCC--CCeeEEEcCCCCeEEEEEccccCCCceeEEEE
Q psy16852 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKEEILPD--NGHTMEFNPTTGECVLSISEATPQDEAVYSVK 483 (579)
Q Consensus 407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~l~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 483 (579)
||.+.. +....+.+|+.+.|.|.+.|.|.| .|.|++++..+... .++.+....
T Consensus 2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~----------------------- 57 (98)
T cd05758 2 PPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDP----------------------- 57 (98)
T ss_pred CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEec-----------------------
Confidence 455543 455678999999999999999999 69999999888643 233322100
Q ss_pred eecceeeeeeeCCeeEEEEeeccc-ccceeEEEEEEeCCeeEEEEEEE
Q psy16852 484 ASSTETKIMTDGNRSVLLISKITR-DQIGDVTCRAENVAGSVTCTATL 530 (579)
Q Consensus 484 ~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~~l 530 (579)
...+..+.|.|.++.. +|.|.|+|.|.|..|.+...+.|
T Consensus 58 --------~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 58 --------SPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred --------CCCceEEEEEECCccccccceeEEEEEEcCCCcccEEEEe
Confidence 0023346799999998 55999999999999999888776
No 97
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.52 E-value=1.6e-13 Score=104.94 Aligned_cols=82 Identities=18% Similarity=0.170 Sum_probs=63.1
Q ss_pred cCCCeEEEEEEEeeCCCeEEEeeCCEEcCCC-CCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeE
Q psy16852 421 AQSPATLKATVTGRPTPSICWYRGKEEILPD-NGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSV 499 (579)
Q Consensus 421 ~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~ 499 (579)
.|..++|.|.+.|.|.|.+.|+++|..+... .++.+.... ......+.
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~-------------------------------~~~~~~s~ 70 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEH-------------------------------TGTVHTSI 70 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeec-------------------------------cCccceeE
Confidence 5678999999999999999999999988543 233221100 00112366
Q ss_pred EEEeecc-cccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 500 LLISKIT-RDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 500 l~i~~~~-~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
|+|.++. .+|.|.|+|.|.|.+|.+..++.|.|.
T Consensus 71 L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~ 105 (109)
T cd05773 71 LTIINVSAALDYALFTCTAHNSLGEDSLDIQLVST 105 (109)
T ss_pred EEECcCCccCCCEEEEEEEEeCCccCcEEEEEEec
Confidence 9999997 589999999999999999999999875
No 98
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.52 E-value=3.1e-13 Score=109.30 Aligned_cols=129 Identities=23% Similarity=0.405 Sum_probs=90.0
Q ss_pred EEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEee-CC-CeEEEe
Q psy16852 365 KLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT-PSICWY 442 (579)
Q Consensus 365 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~v~W~ 442 (579)
+|.|.+++.+|+|.|.|.+.+..+.....+.|.|.. +|.+...+.......|+.++|.|.+.|. |. ++|.|+
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~------~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~ 75 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE------PPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWT 75 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec------CCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEE
Confidence 699999999999999999999888888888998875 5666554444444578999999999985 54 489999
Q ss_pred eCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCe
Q psy16852 443 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAG 522 (579)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 522 (579)
++|...... .+. ..+ .......+...|.|+... .|.+..-..++.+.|+|.|.+..-
T Consensus 76 ~~g~~~~~~---~~~---~~~---~~~~~~~~~~dgt~~~~s--------------~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 76 REPPGDSPP---PVS---LSN---VSFSSHRQHQDGTYSLSS--------------HLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred ECCCCCccc---eec---cCC---eEecceEeCCCCCEEEEE--------------EEEecCCccCCCCEEEEEEEcCCC
Confidence 988542210 000 000 111123334455565443 388877777778899999987643
No 99
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.52 E-value=1.3e-13 Score=105.36 Aligned_cols=92 Identities=28% Similarity=0.542 Sum_probs=67.5
Q ss_pred CCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCC----CeeEEEcCCCCeEEEEEccccCCCceeEEE
Q psy16852 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN----GHTMEFNPTTGECVLSISEATPQDEAVYSV 482 (579)
Q Consensus 407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 482 (579)
+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+.... ...+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~-------------------------- 54 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRI-------------------------- 54 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceE--------------------------
Confidence 4777777888899999999999999999999999999998886521 1111
Q ss_pred EeecceeeeeeeCCeeEEEE--eecccccceeEEEEEEeCCee-EEEEEEEEE
Q psy16852 483 KASSTETKIMTDGNRSVLLI--SKITRDQIGDVTCRAENVAGS-VTCTATLSL 532 (579)
Q Consensus 483 ~~~~~~~~~~~~~~~~~l~i--~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v 532 (579)
+..++....+.+ ..++.+|+|.|+|.|.|..|. ....+.|.|
T Consensus 55 --------~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 55 --------VLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred --------EecCCcEEEEEeeccCCCcCcCEEEEEEEEccccceecceEEEEe
Confidence 011122222333 234689999999999999998 667777765
No 100
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.52 E-value=2.1e-13 Score=101.37 Aligned_cols=86 Identities=21% Similarity=0.300 Sum_probs=61.2
Q ss_pred CeeecCCCceeeecC---CCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852 408 PKFTKPLKPVIAEAQ---SPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 484 (579)
Q Consensus 408 p~~~~~~~~~~~~~g---~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~ 484 (579)
|.|...+....+.+| +.++|.|.+.|.|.|+++|+++|..+.......... .
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~--~----------------------- 56 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTL--V----------------------- 56 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEE--E-----------------------
Confidence 455555666655555 579999999999999999999999885432211111 0
Q ss_pred ecceeeeeeeCCeeEEEEeecc-cccceeEEEEEEeCCeeEEE-EEEE
Q psy16852 485 SSTETKIMTDGNRSVLLISKIT-RDQIGDVTCRAENVAGSVTC-TATL 530 (579)
Q Consensus 485 ~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~-~~~l 530 (579)
.+.|.|.++. .+|+|.|+|.|+|.+|.... .+.|
T Consensus 57 ------------~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 57 ------------AGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL 92 (94)
T ss_pred ------------CCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence 1237887754 58999999999999997654 4444
No 101
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.52 E-value=1.3e-13 Score=101.93 Aligned_cols=85 Identities=26% Similarity=0.341 Sum_probs=60.3
Q ss_pred CCCeEEEEEEEeeCCCeEEEeeC----CEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCe
Q psy16852 422 QSPATLKATVTGRPTPSICWYRG----KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR 497 (579)
Q Consensus 422 g~~~~l~C~~~g~p~~~v~W~~~----~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~ 497 (579)
|+.++|.|.+.|.|.|.|+|+++ +..+..+...........+ ....+...
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~ 54 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAG--------------------------VNTTDKEM 54 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCC--------------------------ceecCCce
Confidence 68899999999999999999984 3344322211111000000 00112234
Q ss_pred eEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 498 SVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 498 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
+.|+|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 89 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTV 89 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEE
Confidence 67999999999999999999999999999999987
No 102
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.52 E-value=7.5e-14 Score=96.35 Aligned_cols=69 Identities=23% Similarity=0.315 Sum_probs=57.7
Q ss_pred EEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVL 97 (579)
Q Consensus 24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~ 97 (579)
+.|.|.+.|.|.|.+.|||||..+.....+ .....|.|.+++.+|+|.|+|.|.|..|....+.++.++
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~-----~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF-----KRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE-----ccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 479999999999999999999999755322 123579999999999999999999999988777766653
No 103
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.51 E-value=1.3e-13 Score=97.47 Aligned_cols=73 Identities=36% Similarity=0.539 Sum_probs=63.2
Q ss_pred CCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852 21 EQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96 (579)
Q Consensus 21 G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v 96 (579)
|+.+.|.|.+.|.|.+.++|++++..+....++... ....|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIW---PDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEEC---CCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 789999999999999999999999998766665432 2357999999999999999999999999888877764
No 104
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.51 E-value=1.2e-13 Score=98.36 Aligned_cols=74 Identities=26% Similarity=0.486 Sum_probs=61.5
Q ss_pred cccccCceeeeCCCCEEEEEEEEeeCCC-eeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCee
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEGHPLP-TMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGV 87 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~ 87 (579)
|+..|.++.+.+|+++.|+|.+.|.|.| .|.|+|+|..+.... ....+.|.|..+ .|+|.|.|.|.|..|.
T Consensus 1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~------~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~ 72 (81)
T cd05749 1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPP------APSPSVLNVPGL--NETSKFSCEAHNAKGV 72 (81)
T ss_pred CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCC------CCCCCEEEEccc--cCCeEEEEEEEeccCc
Confidence 5678999999999999999999999999 799999999886411 112357888877 4789999999999996
Q ss_pred eEE
Q psy16852 88 ATC 90 (579)
Q Consensus 88 ~~~ 90 (579)
..+
T Consensus 73 ~~s 75 (81)
T cd05749 73 TTS 75 (81)
T ss_pred EEe
Confidence 654
No 105
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.51 E-value=9.8e-14 Score=99.51 Aligned_cols=78 Identities=15% Similarity=0.218 Sum_probs=62.9
Q ss_pred CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852 415 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD 494 (579)
Q Consensus 415 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 494 (579)
....+.+|+.+.|.|.+.+. .+.+.|+|+|.+|..+.++.+.
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~------------------------------------- 43 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT------------------------------------- 43 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe-------------------------------------
Confidence 34568899999999999985 5689999999888655443321
Q ss_pred CCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
...|.|.+++.+|+|.|+|.|.|..|.....+.|+|
T Consensus 44 --~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V 79 (79)
T cd04973 44 --GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV 79 (79)
T ss_pred --CCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence 124899999999999999999999999888887764
No 106
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.51 E-value=1.8e-13 Score=97.60 Aligned_cols=72 Identities=25% Similarity=0.481 Sum_probs=54.8
Q ss_pred eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852 425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK 504 (579)
Q Consensus 425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~ 504 (579)
++|.|.+.|.|.|.+.|+|+|.++........ . ....+.|.|.+
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~-~-----------------------------------~~~~~~L~I~~ 44 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYS-V-----------------------------------SSKERTLTLRS 44 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEE-E-----------------------------------eCCCCEEEEee
Confidence 58999999999999999999998855432111 0 11123599999
Q ss_pred cccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 505 ITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 505 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
+..+|+|.|+|.|.|.+|....+..+.|
T Consensus 45 ~~~~D~G~Y~C~a~N~~G~~~s~~~~~l 72 (77)
T cd05760 45 AGPDDSGLYYCCAHNAFGSVCSSQNFTL 72 (77)
T ss_pred CCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence 9999999999999999998765544444
No 107
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.51 E-value=1.4e-13 Score=101.73 Aligned_cols=81 Identities=28% Similarity=0.564 Sum_probs=66.3
Q ss_pred CCccccccCceeeeCCC---CEEEEEEEEeeCCCeeEEEECCEEecCC-CCEEEEEeCCEEEEEEcCCC-CCCCEEEEEE
Q psy16852 6 APRFIEKIQPVVSHQEQ---PALFTCKVEGHPLPTMTWQKDGTELHAT-EHYLITTVESVSTLEIINPT-KEDIGVYTCK 80 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~---~~~l~C~~~~~~~~~v~W~~~g~~~~~~-~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~ 80 (579)
+|.|..+|.++.+.++. .+.|.|.+.|.|.|.++|+|++..+... .++ ... ...|.|.++. .+|+|.|+|.
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~--~~~--~g~L~I~~~~~~~D~G~Y~C~ 76 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRY--SMV--GGNLVINNPDKYKDAGRYVCI 76 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeE--EEE--CCEEEECcCCcCCCCEEEEEE
Confidence 58899999998777655 8999999999999999999999988543 333 222 2579999885 6899999999
Q ss_pred EEcCCeeeEE
Q psy16852 81 ATNIGGVATC 90 (579)
Q Consensus 81 ~~~~~g~~~~ 90 (579)
|.|..|...+
T Consensus 77 A~N~~G~~~s 86 (93)
T cd05849 77 VSNIYGKVRS 86 (93)
T ss_pred EEeCcceEEE
Confidence 9999997655
No 108
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.51 E-value=2.5e-13 Score=95.43 Aligned_cols=70 Identities=29% Similarity=0.416 Sum_probs=57.5
Q ss_pred EEEEEEeeCCCeeEEEECCEEecCCCCEEEEE-----eCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEE
Q psy16852 26 FTCKVEGHPLPTMTWQKDGTELHATEHYLITT-----VESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLI 95 (579)
Q Consensus 26 l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~ 95 (579)
|.|.+.|.|.|.|+|||||++|..+.+..... ....+.|.|.+++.+|+|.|+|.|+|..|....++.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 78999999999999999999998665432221 12356899999999999999999999999888776554
No 109
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.51 E-value=3e-13 Score=99.43 Aligned_cols=79 Identities=20% Similarity=0.389 Sum_probs=62.0
Q ss_pred CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852 415 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD 494 (579)
Q Consensus 415 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 494 (579)
.++.+.+|+.++|.|.+.|. .|.+.|++++..+... +..+ .
T Consensus 11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~-------------------------------------~ 51 (91)
T cd05740 11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQL-------------------------------------S 51 (91)
T ss_pred CccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEE-------------------------------------e
Confidence 34678999999999999999 9999999999887432 2111 1
Q ss_pred CCeeEEEEeecccccceeEEEEEEeCCeeE-EEEEEEEE
Q psy16852 495 GNRSVLLISKITRDQIGDVTCRAENVAGSV-TCTATLSL 532 (579)
Q Consensus 495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v 532 (579)
...+.|+|.+++++|+|.|+|.|.|..|.. ...+.|.|
T Consensus 52 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 52 NDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred CCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 123359999999999999999999999974 44666765
No 110
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.50 E-value=3.2e-13 Score=96.56 Aligned_cols=70 Identities=30% Similarity=0.401 Sum_probs=58.2
Q ss_pred EEEEEEeeCCCeeEEEECCEEecCCCCEEEEEe-------CCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEE
Q psy16852 26 FTCKVEGHPLPTMTWQKDGTELHATEHYLITTV-------ESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLI 95 (579)
Q Consensus 26 l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~-------~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~ 95 (579)
|.|.+.|.|.|.|+|||||+.+..+........ ...+.|.|.+++.+|+|.|+|.|.|..|....++.+.
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 789999999999999999999986654433221 2356899999999999999999999999988877665
No 111
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.50 E-value=2.7e-13 Score=96.81 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=59.3
Q ss_pred CCeEEEEEEEe--eCCCeEEEeeCCEEcCCC--C-CeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCe
Q psy16852 423 SPATLKATVTG--RPTPSICWYRGKEEILPD--N-GHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR 497 (579)
Q Consensus 423 ~~~~l~C~~~g--~p~~~v~W~~~~~~l~~~--~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~ 497 (579)
+++.|.|.+.+ .+++.|.|+++|.+|..+ . ++... ......
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~----------------------------------~~~~~~ 46 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERV----------------------------------GGQDSA 46 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEe----------------------------------ccCCCC
Confidence 46899999976 447799999999999532 1 11110 000123
Q ss_pred eEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 498 SVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 498 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
+.|+|.+++.+|+|+|+|.|.|.+++..+++.|.|+
T Consensus 47 ~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~ 82 (85)
T cd05853 47 GDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVR 82 (85)
T ss_pred CcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEe
Confidence 459999999999999999999999999999999986
No 112
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.50 E-value=1.8e-13 Score=95.67 Aligned_cols=70 Identities=26% Similarity=0.365 Sum_probs=59.2
Q ss_pred EEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVL 97 (579)
Q Consensus 24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~ 97 (579)
+.|.|.+.|.|.|.+.|+|+|..+..+.++ .....+|.|.+++.+|+|.|+|.|.|..|....+..+.+.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~----~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRT----KKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE----EcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 479999999999999999999998766432 2234789999999999999999999999988777777664
No 113
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.50 E-value=2.7e-13 Score=99.19 Aligned_cols=80 Identities=23% Similarity=0.337 Sum_probs=60.2
Q ss_pred CCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEE
Q psy16852 423 SPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL 500 (579)
Q Consensus 423 ~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l 500 (579)
+.++|.|.+.|.|.| ++.|+++|..+....... . |. ........+.|
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~--------~---------------~~--------~~~~~~~~~~L 49 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGG--------H---------------YR--------RVGGKDSNGDL 49 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCc--------c---------------EE--------EEecccccceE
Confidence 478999999999988 679999998875332100 0 00 00011234469
Q ss_pred EEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 501 LISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 501 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 50 ~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 82 (85)
T cd04970 50 MIRNAQLKHAGKYTCTAQTVVDSLSASADLIVR 82 (85)
T ss_pred EEccCCHHhCeeeEEEEecCCCcEEEEEEEEEE
Confidence 999999999999999999999999999999986
No 114
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.50 E-value=1.6e-13 Score=97.71 Aligned_cols=73 Identities=32% Similarity=0.580 Sum_probs=55.6
Q ss_pred eEEEEEEEeeCCCeEEEeeCCEEcCCCC-CeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEe
Q psy16852 425 ATLKATVTGRPTPSICWYRGKEEILPDN-GHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS 503 (579)
Q Consensus 425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~ 503 (579)
++|.|.+.|.|.|.++|+|++....... ...+. .....+.|.|.
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~-----------------------------------~~~~~~~L~I~ 45 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMH-----------------------------------VMPEDDVFFIV 45 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceE-----------------------------------EecCCCEEEEe
Confidence 4799999999999999999876432211 10110 01122359999
Q ss_pred ecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 504 KITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 504 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 46 ~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 46 DVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred eCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 99999999999999999999999999986
No 115
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.49 E-value=8.1e-14 Score=102.93 Aligned_cols=83 Identities=22% Similarity=0.282 Sum_probs=65.8
Q ss_pred ccCceeeeCCCCEEEEEEEEe-----eCCCeeEEEECCEEecCC--CCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852 12 KIQPVVSHQEQPALFTCKVEG-----HPLPTMTWQKDGTELHAT--EHYLITTVESVSTLEIINPTKEDIGVYTCKATNI 84 (579)
Q Consensus 12 ~p~~~~v~~G~~~~l~C~~~~-----~~~~~v~W~~~g~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 84 (579)
.++...+.+|+++.|.|.+.+ .|.+.|.|||+|..+... ...++.. ....|.|.+++.+|+|.|+|.+.|.
T Consensus 5 ~~~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~--~~~~L~I~~~~~~DsG~Y~C~~~N~ 82 (94)
T cd05756 5 VDKKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ--QKDLLWFLPAALEDSGLYTCVVRNS 82 (94)
T ss_pred eeeEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee--cCCeEEEccCCcccCeEEEEEEcCC
Confidence 356788999999999999988 578899999999765422 2222222 2368999999999999999999999
Q ss_pred CeeeEEEEEEEE
Q psy16852 85 GGVATCSANLIV 96 (579)
Q Consensus 85 ~g~~~~~~~~~v 96 (579)
.|.....+.|.|
T Consensus 83 ~g~~~~~~~L~v 94 (94)
T cd05756 83 TYCMKVSISLTV 94 (94)
T ss_pred CccEEEEEEEEC
Confidence 998888776654
No 116
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.49 E-value=5.4e-13 Score=100.45 Aligned_cols=88 Identities=24% Similarity=0.317 Sum_probs=70.3
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCC-eeEEEECCEEecCC--CCEEEEEe----CCEEEEEEcCCCC-CCCEEE
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLP-TMTWQKDGTELHAT--EHYLITTV----ESVSTLEIINPTK-EDIGVY 77 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~-~v~W~~~g~~~~~~--~~~~~~~~----~~~~~L~i~~~~~-~d~G~Y 77 (579)
||.+. .+....+.+|+.++|.|.+.|.|.| .+.|++++..+... .++.+... ...++|+|.+++. +|.|.|
T Consensus 2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 67664 4677889999999999999999998 69999999988653 45554433 2246899999999 559999
Q ss_pred EEEEEcCCeeeEEEEEE
Q psy16852 78 TCKATNIGGVATCSANL 94 (579)
Q Consensus 78 ~C~~~~~~g~~~~~~~~ 94 (579)
+|.|.|..|.....+.|
T Consensus 81 ~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 81 NCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEcCCCcccEEEEe
Confidence 99999999987776544
No 117
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.49 E-value=5e-13 Score=98.91 Aligned_cols=86 Identities=27% Similarity=0.436 Sum_probs=66.6
Q ss_pred cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE-CCEEecCCCCEEEEEe-CCEEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK-DGTELHATEHYLITTV-ESVSTLEIINPTKEDIGVYTCKATNIGG 86 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~-~g~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~g 86 (579)
+...|....+.+|+.+.|.|.+.|.|. .+.|++ ++..+....++..... ...++|+|.+++.+|+|.|+|.|.|..|
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g 81 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKG 81 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence 345688899999999999999999875 999998 6776665444443332 3467999999999999999999999865
Q ss_pred -eeEEEEEEE
Q psy16852 87 -VATCSANLI 95 (579)
Q Consensus 87 -~~~~~~~~~ 95 (579)
....++.|.
T Consensus 82 ~~~~~sv~l~ 91 (92)
T cd04977 82 TESEATVNLK 91 (92)
T ss_pred CcceeEEEEE
Confidence 445555543
No 118
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.49 E-value=2.2e-13 Score=96.14 Aligned_cols=70 Identities=26% Similarity=0.483 Sum_probs=56.7
Q ss_pred eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852 425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK 504 (579)
Q Consensus 425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~ 504 (579)
++|.|.+.|.|.|.+.|++++..+.... ... ....+.|.|.+
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~~~-------------------------------------~~~~~~L~i~~ 42 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADR-TKF-------------------------------------ENFNKTLKIDN 42 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCc-eeE-------------------------------------ecCCCEEEECC
Confidence 5799999999999999999987764321 110 11234599999
Q ss_pred cccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 505 ITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 505 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 43 v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 43 VSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 9999999999999999999999988876
No 119
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.49 E-value=1.6e-13 Score=101.24 Aligned_cols=85 Identities=24% Similarity=0.357 Sum_probs=59.3
Q ss_pred CCCeEEEEEEEeeCCCeEEEeeCC----EEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCe
Q psy16852 422 QSPATLKATVTGRPTPSICWYRGK----EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR 497 (579)
Q Consensus 422 g~~~~l~C~~~g~p~~~v~W~~~~----~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~ 497 (579)
|+.++|.|.+.|.|.|+|+|+|++ ..+....... ..+.... ......+..
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~-----------~~~~~~~---------------~~~~~~~~~ 54 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPY-----------VTVLKVA---------------GINTTDNES 54 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCce-----------EEEEEec---------------CCccccccc
Confidence 678999999999999999999964 2221111100 0000000 001112334
Q ss_pred eEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 498 SVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 498 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
..|.|.+++.+|+|.|+|.|.|.+|...+++.|.|
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V 89 (90)
T cd04974 55 EVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTV 89 (90)
T ss_pred ceEEEeccccccCcEEEEEeecccCcccCCEEEEe
Confidence 56999999999999999999999999999999987
No 120
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.48 E-value=5e-13 Score=98.15 Aligned_cols=94 Identities=22% Similarity=0.290 Sum_probs=69.3
Q ss_pred CCeeecCCCceeeecCCCeEEEEEEEeeCCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS 485 (579)
Q Consensus 407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 485 (579)
||.+ .......+.+|+.++|.|.+.+.|+| .|.|.+++..+..+. .++|..+-.
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~------------------------~~r~~I~~~ 56 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGT------------------------SERYTVERT 56 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCC------------------------CCCEEEEEE
Confidence 4555 45566778899999999999889988 789999877654321 112222111
Q ss_pred cceeeeeeeCCeeEEEEeeccccc-ceeEEEEEEeCCeeEEEEEEE
Q psy16852 486 STETKIMTDGNRSVLLISKITRDQ-IGDVTCRAENVAGSVTCTATL 530 (579)
Q Consensus 486 ~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~~~~~l 530 (579)
....+..+.|+|.++...| .|.|.|.|.|.+|.+...+.|
T Consensus 57 -----~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 57 -----STGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred -----ccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceEEEEe
Confidence 1224677889999998766 799999999999999888876
No 121
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.48 E-value=4.1e-13 Score=98.21 Aligned_cols=78 Identities=28% Similarity=0.470 Sum_probs=63.0
Q ss_pred CCEEEEEEEEeeCCC--eeEEEECCEEecCCC---CEE-EEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEE
Q psy16852 22 QPALFTCKVEGHPLP--TMTWQKDGTELHATE---HYL-ITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLI 95 (579)
Q Consensus 22 ~~~~l~C~~~~~~~~--~v~W~~~g~~~~~~~---~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~ 95 (579)
++++|.|.+.+.|.+ .+.|+++|..+.... .+. .......+.|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 578999999998877 679999999886432 222 22223457899999999999999999999999999999999
Q ss_pred EEec
Q psy16852 96 VLEK 99 (579)
Q Consensus 96 v~~~ 99 (579)
|.++
T Consensus 81 V~~p 84 (85)
T cd04970 81 VRGP 84 (85)
T ss_pred EECC
Confidence 8753
No 122
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.48 E-value=2.5e-13 Score=99.21 Aligned_cols=78 Identities=22% Similarity=0.448 Sum_probs=62.3
Q ss_pred eeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCe
Q psy16852 418 IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR 497 (579)
Q Consensus 418 ~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~ 497 (579)
....|+.++|.|.+.|.|.|.+.|++++..+........ ....
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~-------------------------------------~~~~ 47 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGES-------------------------------------RKKK 47 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCcccee-------------------------------------cCce
Confidence 356799999999999999999999999887754322110 1123
Q ss_pred eEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 498 SVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 498 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
+.|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 48 ~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 48 WTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred EEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 45999999999999999999999999888887764
No 123
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.48 E-value=2.8e-13 Score=96.77 Aligned_cols=78 Identities=21% Similarity=0.312 Sum_probs=62.3
Q ss_pred CCEEEEEEEEeeC--CCeeEEEECCEEecC--CC-CEEEEEe-CCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEE
Q psy16852 22 QPALFTCKVEGHP--LPTMTWQKDGTELHA--TE-HYLITTV-ESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLI 95 (579)
Q Consensus 22 ~~~~l~C~~~~~~--~~~v~W~~~g~~~~~--~~-~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~ 95 (579)
+++.|.|.+.+.+ .+.|.|++||+.|.. .. ++..... ...+.|+|.+++.+|+|.|+|.|.|..+....++.|+
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 5789999997644 678999999999963 22 3322211 2346899999999999999999999999999999999
Q ss_pred EEec
Q psy16852 96 VLEK 99 (579)
Q Consensus 96 v~~~ 99 (579)
|.++
T Consensus 81 V~~p 84 (85)
T cd05853 81 VRGP 84 (85)
T ss_pred EecC
Confidence 9754
No 124
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.48 E-value=3.3e-13 Score=101.13 Aligned_cols=86 Identities=29% Similarity=0.505 Sum_probs=66.2
Q ss_pred cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCC-----CCCCCEEEEEEEEc
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINP-----TKEDIGVYTCKATN 83 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~-----~~~d~G~Y~C~~~~ 83 (579)
|+..|.+..+.+|++++|.|.+.|.|.|.|.|+|+|..+......+..... ...|.|.++ +.+|+|.|+|.|.|
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~-~~~l~i~~v~~~~~~~~D~G~Y~C~a~N 80 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLP-NGSLLITSVVHSKHNKPDEGFYQCVAQN 80 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEcc-CCeEEEeeeeccCCCCCcCEEEEEEEEC
Confidence 667899999999999999999999999999999999988754432222222 234666665 68999999999999
Q ss_pred C-CeeeE-EEEEEE
Q psy16852 84 I-GGVAT-CSANLI 95 (579)
Q Consensus 84 ~-~g~~~-~~~~~~ 95 (579)
. .|... ..+.|+
T Consensus 81 ~~~G~~~s~~~~l~ 94 (95)
T cd05722 81 DSLGSIVSRTARLT 94 (95)
T ss_pred CccCcEEEeeeEEe
Confidence 9 88764 345544
No 125
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.48 E-value=2.7e-13 Score=95.03 Aligned_cols=70 Identities=27% Similarity=0.476 Sum_probs=58.4
Q ss_pred EEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852 24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96 (579)
Q Consensus 24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v 96 (579)
+.|.|.+.|.|.|.+.|+|++..+.... . .......+|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-T--KKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCc-e--eEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 5799999999999999999998775432 2 22334578999999999999999999999999888777765
No 126
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.48 E-value=5.7e-13 Score=98.62 Aligned_cols=83 Identities=20% Similarity=0.323 Sum_probs=61.6
Q ss_pred CCceeeecCCCeEEEEEEEeeCCCeEEEee-CCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852 414 LKPVIAEAQSPATLKATVTGRPTPSICWYR-GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM 492 (579)
Q Consensus 414 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~-~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~ 492 (579)
+....+..|+.+.|.|.+.|.|+ .+.|++ ++..+....++.+..
T Consensus 7 p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~---------------------------------- 51 (92)
T cd04977 7 PSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQ---------------------------------- 51 (92)
T ss_pred cCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEe----------------------------------
Confidence 34567889999999999999975 999998 555554433332211
Q ss_pred eeCCeeEEEEeecccccceeEEEEEEeCCe-eEEEEEEEE
Q psy16852 493 TDGNRSVLLISKITRDQIGDVTCRAENVAG-SVTCTATLS 531 (579)
Q Consensus 493 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~ 531 (579)
.....++|+|.+++.+|+|.|+|.|.|..| ...+++.|.
T Consensus 52 ~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~ 91 (92)
T cd04977 52 NDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLK 91 (92)
T ss_pred CCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEE
Confidence 123456799999999999999999999976 456666665
No 127
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.48 E-value=4.3e-13 Score=95.53 Aligned_cols=72 Identities=24% Similarity=0.454 Sum_probs=56.1
Q ss_pred cCCCceeeecCCCeEEEEEEEeeCCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceee
Q psy16852 412 KPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK 490 (579)
Q Consensus 412 ~~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~ 490 (579)
..+.+..+..|+.+.|.|.+.|.|.| +|.|+++|.++....
T Consensus 3 ~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~-------------------------------------- 44 (81)
T cd05749 3 VEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPP-------------------------------------- 44 (81)
T ss_pred CCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCC--------------------------------------
Confidence 34566789999999999999999999 799999998874310
Q ss_pred eeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEE
Q psy16852 491 IMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC 526 (579)
Q Consensus 491 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~ 526 (579)
....+.|.|..+ .|.|.|.|.|+|.+|....
T Consensus 45 ---~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 45 ---APSPSVLNVPGL--NETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred ---CCCCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence 012234777776 4689999999999996553
No 128
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.48 E-value=3.7e-13 Score=95.97 Aligned_cols=72 Identities=31% Similarity=0.552 Sum_probs=56.7
Q ss_pred EEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEE--EEEEE
Q psy16852 24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCS--ANLIV 96 (579)
Q Consensus 24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~--~~~~v 96 (579)
++|.|.+.|.|.|.++|+|+|..+...... .........|.|.+++.+|+|.|+|.|.|..|....+ ++|.|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGN-YSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCcc-EEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 589999999999999999999998654321 1223334689999999999999999999999977544 44444
No 129
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.48 E-value=2e-13 Score=95.32 Aligned_cols=69 Identities=26% Similarity=0.541 Sum_probs=55.4
Q ss_pred eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852 425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK 504 (579)
Q Consensus 425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~ 504 (579)
++|.|.+.|.|+|.+.|++++..+... ++.+. ....|.|.+
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~--------------------------------------~~~~L~I~~ 41 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEIL--------------------------------------DDKSLKIRN 41 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCC-cEEEe--------------------------------------eCCEEEECc
Confidence 579999999999999999997765322 22110 123499999
Q ss_pred cccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 505 ITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 505 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
++.+|+|.|+|.|.|..|....++.|.|
T Consensus 42 v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 42 VTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 9999999999999999999999888864
No 130
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.48 E-value=5.3e-13 Score=98.59 Aligned_cols=84 Identities=23% Similarity=0.341 Sum_probs=59.7
Q ss_pred CeeecCCCceeeec---CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCC-CeeEEEcCCCCeEEEEEccccCCCceeEEEE
Q psy16852 408 PKFTKPLKPVIAEA---QSPATLKATVTGRPTPSICWYRGKEEILPDN-GHTMEFNPTTGECVLSISEATPQDEAVYSVK 483 (579)
Q Consensus 408 p~~~~~~~~~~~~~---g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 483 (579)
|.|...+....+.+ |+.+.|.|.+.|.|.|+++|+|++..+.... ++.+
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~--------------------------- 54 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSM--------------------------- 54 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEE---------------------------
Confidence 45555555544433 4479999999999999999999998874322 1111
Q ss_pred eecceeeeeeeCCeeEEEEeecc-cccceeEEEEEEeCCeeEEE-EEEE
Q psy16852 484 ASSTETKIMTDGNRSVLLISKIT-RDQIGDVTCRAENVAGSVTC-TATL 530 (579)
Q Consensus 484 ~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~-~~~l 530 (579)
..+.|.|.++. .+|+|.|+|.|.|.+|.... .+.|
T Consensus 55 ------------~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 55 ------------VGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred ------------ECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 01348888875 58999999999999997644 4444
No 131
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.47 E-value=2.5e-13 Score=94.58 Aligned_cols=68 Identities=34% Similarity=0.595 Sum_probs=58.2
Q ss_pred EEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEE
Q psy16852 24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANL 94 (579)
Q Consensus 24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~ 94 (579)
|.|.|.+.|.|.|.+.|+|+|..+....++.+. ....|.|.+++.+|+|.|+|.|.|..|....++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHIS---PEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEEC---CCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 579999999999999999999988766655432 23689999999999999999999999988877655
No 132
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.47 E-value=4.1e-13 Score=95.95 Aligned_cols=74 Identities=28% Similarity=0.455 Sum_probs=60.0
Q ss_pred eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852 425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK 504 (579)
Q Consensus 425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~ 504 (579)
+.|.|.+.|.|.|.+.|+|++..+..+.+..+.. .+..+.|.|.+
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~-----------------------------------~~~~~~l~I~~ 45 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTL-----------------------------------IANGSELHISN 45 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEE-----------------------------------eCCCCEEEECc
Confidence 4799999999999999999999886543322211 12234599999
Q ss_pred cccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 505 ITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 505 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
++.+|.|.|+|.|.|..|.+..++.|.|.
T Consensus 46 ~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 46 VRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 99999999999999999999999999875
No 133
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.47 E-value=1.2e-13 Score=97.81 Aligned_cols=67 Identities=18% Similarity=0.301 Sum_probs=57.2
Q ss_pred CccccccCceeeeCCCCEEEEEEEEeeCC-CeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPL-PTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI 84 (579)
Q Consensus 7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~-~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 84 (579)
|.+...|+...+.+|++++|+|.+.+.|. ..+.|||||..+.. ....|.|.++ .+|+|.|+|+|.+.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec-ccCCEEeEEECCCC
Confidence 56788899999999999999999988765 47999999998732 2257999999 99999999999764
No 134
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.47 E-value=5.8e-13 Score=92.13 Aligned_cols=68 Identities=28% Similarity=0.485 Sum_probs=55.9
Q ss_pred CCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEE
Q psy16852 21 EQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANL 94 (579)
Q Consensus 21 G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~ 94 (579)
|+.++|.|.+.|.|.|.|+|+|+|..+....... .....|+|.++. |+|.|+|.|.|..|....++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~----~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMP----VGRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCcccee----cCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 7899999999999999999999999886544322 123579999874 8999999999999988777655
No 135
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.47 E-value=5.4e-13 Score=94.82 Aligned_cols=73 Identities=30% Similarity=0.471 Sum_probs=57.4
Q ss_pred CCCeEEEEEEEeeCCCeEEEee-CCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEE
Q psy16852 422 QSPATLKATVTGRPTPSICWYR-GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL 500 (579)
Q Consensus 422 g~~~~l~C~~~g~p~~~v~W~~-~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l 500 (579)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+..+ . ..+.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~-~-------------------------------------~~~~L 42 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLV-Y-------------------------------------DNGTL 42 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEE-e-------------------------------------cCCEE
Confidence 7889999999999999999997 5555543332211 0 12348
Q ss_pred EEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 501 LISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 501 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
.|..+..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 43 ~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 43 DILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred EEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 89999999999999999999999988888764
No 136
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.46 E-value=4.7e-13 Score=94.64 Aligned_cols=72 Identities=24% Similarity=0.418 Sum_probs=55.0
Q ss_pred eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852 425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK 504 (579)
Q Consensus 425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~ 504 (579)
++|.|.+.|.|.|.|.|++++.++.......+.. ...+.|.|.+
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~------------------------------------~~~g~L~i~~ 44 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQ------------------------------------LRSGALQIEN 44 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEE------------------------------------cCCcEEEECC
Confidence 4799999999999999999998875322111110 0122489999
Q ss_pred cccccceeEEEEEEeCCee-EEEEEEEEE
Q psy16852 505 ITRDQIGDVTCRAENVAGS-VTCTATLSL 532 (579)
Q Consensus 505 ~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v 532 (579)
++.+|+|.|+|.|.|..|. ....+.|.|
T Consensus 45 ~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 45 SEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 9999999999999999997 467777776
No 137
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.46 E-value=4.1e-13 Score=98.98 Aligned_cols=80 Identities=34% Similarity=0.545 Sum_probs=64.8
Q ss_pred ccCceeeeCCCCEEEEEEE-EeeCCCeeEEEECCEEecCC-CCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeE
Q psy16852 12 KIQPVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHAT-EHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVAT 89 (579)
Q Consensus 12 ~p~~~~v~~G~~~~l~C~~-~~~~~~~v~W~~~g~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~ 89 (579)
.|.+..+.+|+++.|.|.+ .+.|.+.+.|+++|..+... .++... ....|.|.+++.+|+|.|+|.+.|..|...
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 78 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIV---DDGNLLIAEARKSDEGTYKCVATNMVGERE 78 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEc---cCCEEEEeECCcccCEEEEEEEEeccCcee
Confidence 5778899999999999998 68888999999999988763 333322 135899999999999999999999988764
Q ss_pred E-EEEE
Q psy16852 90 C-SANL 94 (579)
Q Consensus 90 ~-~~~~ 94 (579)
. .+.+
T Consensus 79 s~~~~l 84 (86)
T cd05724 79 SAAARL 84 (86)
T ss_pred eeeEEE
Confidence 4 3443
No 138
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.46 E-value=3.1e-13 Score=96.24 Aligned_cols=73 Identities=34% Similarity=0.615 Sum_probs=57.6
Q ss_pred EEEEEEEEeeCCCeeEEEECCEEe-cCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852 24 ALFTCKVEGHPLPTMTWQKDGTEL-HATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96 (579)
Q Consensus 24 ~~l~C~~~~~~~~~v~W~~~g~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v 96 (579)
++|.|.+.|.|.|.++|+|+|... ......+.........|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 479999999999999999998643 2222222233333458999999999999999999999999888888877
No 139
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.46 E-value=3.4e-13 Score=99.78 Aligned_cols=83 Identities=28% Similarity=0.474 Sum_probs=60.4
Q ss_pred CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEE
Q psy16852 422 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL 501 (579)
Q Consensus 422 g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~ 501 (579)
|+.++|.|.+.|.|.|.+.|++++..+.... .-.....+.|. +. ..+.|+
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~------------------~~~~~~~~r~~---------v~---~~~~L~ 50 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFS------------------YQPPQSSSRFS---------VS---QTGDLT 50 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeec------------------ccCCCCCCeEE---------EC---CCCeEE
Confidence 6889999999999999999999875431100 00000111121 11 123599
Q ss_pred EeecccccceeEEEEEEeCCeeEEEEEEEEEee
Q psy16852 502 ISKITRDQIGDVTCRAENVAGSVTCTATLSLLP 534 (579)
Q Consensus 502 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 534 (579)
|.+++.+|+|.|+|.|.|..|.....+.|.|..
T Consensus 51 I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 83 (90)
T cd05726 51 ITNVQRSDVGYYICQTLNVAGSILTKAYLEVTD 83 (90)
T ss_pred EeeCChhhCEEEEEEEEcCCCceEEEEEEEEee
Confidence 999999999999999999999999999999873
No 140
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.46 E-value=6.3e-13 Score=91.77 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=53.7
Q ss_pred eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852 425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK 504 (579)
Q Consensus 425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~ 504 (579)
+.|.|.+.|.|.|++.|+|+|.++...... ... + ...|.|.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~-~~~-----------------------------------~--~~~L~I~~ 42 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSR-YHV-----------------------------------D--GYSLVIKD 42 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcE-EEe-----------------------------------C--CCEEEECc
Confidence 479999999999999999999988653211 100 1 12499999
Q ss_pred cccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 505 ITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 505 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
++.+|+|.|+|.|.|..........+++
T Consensus 43 v~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 43 VTEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred CCHHHCEEEEEEEEccccceEeeEEEEE
Confidence 9999999999999999776666666554
No 141
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.46 E-value=8.9e-13 Score=97.15 Aligned_cols=80 Identities=24% Similarity=0.415 Sum_probs=61.8
Q ss_pred CCceeeecCCCeEEEEEE-EeeCCCeEEEeeCCEEcCCCC-CeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeee
Q psy16852 414 LKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDN-GHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKI 491 (579)
Q Consensus 414 ~~~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~ 491 (579)
+....+.+|+++.|.|.+ .|.|.|.+.|++++..+.... ++.+ .
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~-~--------------------------------- 48 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRI-V--------------------------------- 48 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEE-c---------------------------------
Confidence 345678899999999998 789999999999998875532 1111 0
Q ss_pred eeeCCeeEEEEeecccccceeEEEEEEeCCeeEE-EEEEEE
Q psy16852 492 MTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT-CTATLS 531 (579)
Q Consensus 492 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~ 531 (579)
..+.|.|.+++.+|+|.|+|.|.|..|... ..+.|.
T Consensus 49 ----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 85 (86)
T cd05724 49 ----DDGNLLIAEARKSDEGTYKCVATNMVGERESAAARLS 85 (86)
T ss_pred ----cCCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEE
Confidence 123599999999999999999999999754 455554
No 142
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.45 E-value=7.6e-13 Score=96.65 Aligned_cols=79 Identities=29% Similarity=0.458 Sum_probs=64.3
Q ss_pred eeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEE
Q psy16852 16 VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLI 95 (579)
Q Consensus 16 ~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~ 95 (579)
+.+..|++++|.|.+.+.|.|.+.|+++|..+...... ........|.|.+++.+|+|.|+|.+.|..|.....+.|.
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~--~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIG--ESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccc--eecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 45778999999999999999999999999987644322 1223457899999999999999999999999877766654
Q ss_pred E
Q psy16852 96 V 96 (579)
Q Consensus 96 v 96 (579)
|
T Consensus 82 v 82 (82)
T cd05856 82 V 82 (82)
T ss_pred C
Confidence 3
No 143
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.44 E-value=7.4e-13 Score=97.89 Aligned_cols=76 Identities=33% Similarity=0.455 Sum_probs=59.5
Q ss_pred CCCEEEEEEEEeeCCCeeEEEEC----CEEecCCCCEEEEE---------eCCEEEEEEcCCCCCCCEEEEEEEEcCCee
Q psy16852 21 EQPALFTCKVEGHPLPTMTWQKD----GTELHATEHYLITT---------VESVSTLEIINPTKEDIGVYTCKATNIGGV 87 (579)
Q Consensus 21 G~~~~l~C~~~~~~~~~v~W~~~----g~~~~~~~~~~~~~---------~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~ 87 (579)
|+.++|.|.+.|.|.|.|.|+|+ |..+.......... ......|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 78999999999999999999994 44443322211111 112368999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy16852 88 ATCSANLIV 96 (579)
Q Consensus 88 ~~~~~~~~v 96 (579)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 888888877
No 144
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.44 E-value=1e-12 Score=93.81 Aligned_cols=74 Identities=38% Similarity=0.600 Sum_probs=62.8
Q ss_pred EEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVL 97 (579)
Q Consensus 24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~ 97 (579)
+.|.|.+.|.|.|.+.|+|++..+..+...+.........|.|.+++.+|.|.|+|.+.|..|.....+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 46999999999999999999999876554444444555689999999999999999999999998888888774
No 145
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.44 E-value=1.3e-12 Score=97.94 Aligned_cols=84 Identities=24% Similarity=0.393 Sum_probs=60.5
Q ss_pred CCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852 413 PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM 492 (579)
Q Consensus 413 ~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~ 492 (579)
.+....+.+|+++.|.|.+.|.|.|.+.|+|+|..+.......... .
T Consensus 5 ~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~---------------------------------~ 51 (95)
T cd05722 5 EPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQ---------------------------------L 51 (95)
T ss_pred CCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEE---------------------------------c
Confidence 3455677889999999999999999999999999886543211110 0
Q ss_pred eeCCeeEEEEeec-----ccccceeEEEEEEeC-CeeE-EEEEEEEE
Q psy16852 493 TDGNRSVLLISKI-----TRDQIGDVTCRAENV-AGSV-TCTATLSL 532 (579)
Q Consensus 493 ~~~~~~~l~i~~~-----~~~d~G~Y~C~a~n~-~g~~-~~~~~l~v 532 (579)
..+.|.|.++ ..+|+|.|+|.|.|. .|.. ...+.|.|
T Consensus 52 ---~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 52 ---PNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV 95 (95)
T ss_pred ---cCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEeC
Confidence 0112455554 578999999999999 9976 45666653
No 146
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.43 E-value=1.4e-12 Score=96.69 Aligned_cols=82 Identities=32% Similarity=0.559 Sum_probs=64.8
Q ss_pred CccccccCceeeeCC---CCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCC-CCCCEEEEEEEE
Q psy16852 7 PRFIEKIQPVVSHQE---QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPT-KEDIGVYTCKAT 82 (579)
Q Consensus 7 p~~~~~p~~~~v~~G---~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~ 82 (579)
|.|+.+|.++.+.+| +.+.|.|.+.|.|.+.++|++++..+............ ..|.|.++. .+|+|.|+|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~--~~L~i~~~~~~~d~G~Y~C~a~ 79 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVG--GNLVISNPSKAKDAGRYQCLAS 79 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEEC--CEEEEecCCccCCCEEEEEEEE
Confidence 778889999877655 57999999999999999999999988543322222222 478898887 499999999999
Q ss_pred cCCeeeEE
Q psy16852 83 NIGGVATC 90 (579)
Q Consensus 83 ~~~g~~~~ 90 (579)
|..|...+
T Consensus 80 N~~G~~~S 87 (91)
T cd04967 80 NIVGTVLS 87 (91)
T ss_pred cCCCEEEe
Confidence 99987655
No 147
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.43 E-value=9.2e-13 Score=94.13 Aligned_cols=74 Identities=30% Similarity=0.437 Sum_probs=56.7
Q ss_pred eEEEEEEEe-eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEe
Q psy16852 425 ATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS 503 (579)
Q Consensus 425 ~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~ 503 (579)
+.|.|.+.| .|.|.+.|+++|..+....+... + ++......+.|.|.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~----------~----------------------~~~~~~~~~~L~I~ 48 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRN----------I----------------------KIRNKKKNSELQIN 48 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcce----------E----------------------EEEecCceEEEEEc
Confidence 479999999 99999999999998865433221 0 01112334669999
Q ss_pred ecccccceeEEEEEEeCCeeEEEEEEE
Q psy16852 504 KITRDQIGDVTCRAENVAGSVTCTATL 530 (579)
Q Consensus 504 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l 530 (579)
+++.+|+|.|+|.|.|.+|.+..++.+
T Consensus 49 ~~~~~D~G~Y~C~a~N~~G~~~~~~~~ 75 (75)
T cd05750 49 KAKLADSGEYTCVVENILGNDTVTANV 75 (75)
T ss_pred cCCcccCeEEEEEEEEcCCceeEEEeC
Confidence 999999999999999999998877653
No 148
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.42 E-value=5.9e-13 Score=98.34 Aligned_cols=82 Identities=13% Similarity=0.265 Sum_probs=62.2
Q ss_pred ceeeecCCCeEEEEEEEe-----eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceee
Q psy16852 416 PVIAEAQSPATLKATVTG-----RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK 490 (579)
Q Consensus 416 ~~~~~~g~~~~l~C~~~g-----~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~ 490 (579)
...+.+|+.+.|.|.+.| .|.|.|.|+|++..+........ +
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~---------------------------------r 54 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERS---------------------------------R 54 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccc---------------------------------e
Confidence 456778999999999998 68889999999865432110000 0
Q ss_pred eeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 491 IMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 491 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
+.. ..+.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 55 ~~~--~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L~v 94 (94)
T cd05756 55 MHQ--QKDLLWFLPAALEDSGLYTCVVRNSTYCMKVSISLTV 94 (94)
T ss_pred eee--cCCeEEEccCCcccCeEEEEEEcCCCccEEEEEEEEC
Confidence 001 1245999999999999999999999999999988874
No 149
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.42 E-value=1.2e-12 Score=92.40 Aligned_cols=70 Identities=37% Similarity=0.535 Sum_probs=57.9
Q ss_pred EEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852 24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96 (579)
Q Consensus 24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v 96 (579)
++|.|.+.|.|.|.+.|+|++..+.... . ........|.|.+++.+|+|.|+|.|.|..|.....+.+.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~--~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADR-T--KFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCc-e--eEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 5799999999999999999998775432 2 22234468999999999999999999999998888777766
No 150
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.42 E-value=5.6e-12 Score=101.99 Aligned_cols=119 Identities=21% Similarity=0.310 Sum_probs=82.2
Q ss_pred EEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC-CeEEEE
Q psy16852 63 TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT-PSICWY 140 (579)
Q Consensus 63 ~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~ 140 (579)
+|+|.+++.+|+|.|+|.+.+..+.....+.|.|.. +|.+...+......+|+.+.|.|.+.++ |. +.|.|+
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~------~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~ 75 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE------PPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWT 75 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec------CCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEE
Confidence 699999999999999999998888888888888864 3444443444444478999999999885 54 599999
Q ss_pred ECCEEccC----CCCceE--EEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852 141 RGKEEILP----DNGHTM--EFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFG 187 (579)
Q Consensus 141 ~~~~~~~~----~~~~~~--~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~ 187 (579)
+++..... ...... .....++ .+.|.+.....++.+.|+|.+.+...
T Consensus 76 ~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 76 REPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred ECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence 98754211 011110 0111112 24677776666677899999987643
No 151
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.42 E-value=6.8e-13 Score=92.64 Aligned_cols=69 Identities=41% Similarity=0.640 Sum_probs=57.0
Q ss_pred EEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852 24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96 (579)
Q Consensus 24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v 96 (579)
++|.|.+.|.|.|.+.|+|++..+... ++... ....|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEIL---DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCC-cEEEe---eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 579999999999999999998776543 33333 3357999999999999999999999998888777654
No 152
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.42 E-value=9.7e-13 Score=93.80 Aligned_cols=67 Identities=22% Similarity=0.502 Sum_probs=49.4
Q ss_pred eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852 425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK 504 (579)
Q Consensus 425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~ 504 (579)
++|.|.+.|.|.|+|+|+|+|..+.......+.. ....+.|.|..
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~-----------------------------------~~~~g~L~i~~ 45 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTM-----------------------------------KPDSGTLVIDN 45 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEE-----------------------------------eCCCCEEEEec
Confidence 5799999999999999999999885433222222 11234477777
Q ss_pred ccc----ccceeEEEEEEeCCeeEEE
Q psy16852 505 ITR----DQIGDVTCRAENVAGSVTC 526 (579)
Q Consensus 505 ~~~----~d~G~Y~C~a~n~~g~~~~ 526 (579)
+.. +|+|.|+|.|.|.+|....
T Consensus 46 ~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 46 MNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred cCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 753 6899999999999997543
No 153
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.41 E-value=1.2e-12 Score=93.49 Aligned_cols=70 Identities=33% Similarity=0.497 Sum_probs=57.5
Q ss_pred EEEEEEEEe-eCCCeeEEEECCEEecCCCCEE---EEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEE
Q psy16852 24 ALFTCKVEG-HPLPTMTWQKDGTELHATEHYL---ITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSAN 93 (579)
Q Consensus 24 ~~l~C~~~~-~~~~~v~W~~~g~~~~~~~~~~---~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~ 93 (579)
+.|.|.+.| .|.+.+.|+|+|..+....... .........|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 479999999 8999999999999987654432 333345689999999999999999999999998776553
No 154
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.41 E-value=1.9e-12 Score=91.49 Aligned_cols=72 Identities=36% Similarity=0.565 Sum_probs=56.2
Q ss_pred EEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeee-EEEEEEEE
Q psy16852 24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA-TCSANLIV 96 (579)
Q Consensus 24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~-~~~~~~~v 96 (579)
++|.|.+.|.|.|.|.|||++..+......+.... ....|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~-~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL-RSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc-CCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 47999999999999999999998863322222222 33579999999999999999999999875 45566655
No 155
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.40 E-value=2e-12 Score=95.66 Aligned_cols=76 Identities=28% Similarity=0.611 Sum_probs=62.1
Q ss_pred CCCEEEEEEEEeeCCCeeEEEECCEEec--------CCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEE
Q psy16852 21 EQPALFTCKVEGHPLPTMTWQKDGTELH--------ATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSA 92 (579)
Q Consensus 21 G~~~~l~C~~~~~~~~~v~W~~~g~~~~--------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~ 92 (579)
|+.++|.|.+.+.|.|.+.|+++|..+. ...++.+ . ....|+|.+++.+|+|.|+|.|.|..|.....+
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v--~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 77 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSV--S-QTGDLTITNVQRSDVGYYICQTLNVAGSILTKA 77 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEE--C-CCCeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence 7899999999999999999999986531 1223322 2 235799999999999999999999999999999
Q ss_pred EEEEEec
Q psy16852 93 NLIVLEK 99 (579)
Q Consensus 93 ~~~v~~~ 99 (579)
.|.|.+.
T Consensus 78 ~l~V~~~ 84 (90)
T cd05726 78 YLEVTDV 84 (90)
T ss_pred EEEEeec
Confidence 9999753
No 156
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.40 E-value=2.3e-12 Score=91.47 Aligned_cols=67 Identities=22% Similarity=0.426 Sum_probs=48.0
Q ss_pred eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852 425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK 504 (579)
Q Consensus 425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~ 504 (579)
+.|.|.+.|.|.|+|+|+++|.++.......+.+ ....++|.|..
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~-----------------------------------~~~~g~l~i~~ 45 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTM-----------------------------------KPNTGTLVINI 45 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEE-----------------------------------eCCCceEEEec
Confidence 5799999999999999999998874332222221 11223466666
Q ss_pred ccc----ccceeEEEEEEeCCeeEEE
Q psy16852 505 ITR----DQIGDVTCRAENVAGSVTC 526 (579)
Q Consensus 505 ~~~----~d~G~Y~C~a~n~~g~~~~ 526 (579)
+.. .|+|.|+|.|.|.+|....
T Consensus 46 ~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 46 MNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred cccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 653 3789999999999998654
No 157
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.40 E-value=1.8e-12 Score=95.61 Aligned_cols=76 Identities=28% Similarity=0.352 Sum_probs=58.6
Q ss_pred CCCEEEEEEEEeeCCCeeEEEECC----EEecCCCC--EEEEE-------eCCEEEEEEcCCCCCCCEEEEEEEEcCCee
Q psy16852 21 EQPALFTCKVEGHPLPTMTWQKDG----TELHATEH--YLITT-------VESVSTLEIINPTKEDIGVYTCKATNIGGV 87 (579)
Q Consensus 21 G~~~~l~C~~~~~~~~~v~W~~~g----~~~~~~~~--~~~~~-------~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~ 87 (579)
|+.++|.|.+.|.|.|.|+|+|++ ..+..... ..... ......|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 789999999999999999999963 33322211 11111 122357999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy16852 88 ATCSANLIV 96 (579)
Q Consensus 88 ~~~~~~~~v 96 (579)
...++.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 988888877
No 158
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.39 E-value=2.7e-12 Score=91.15 Aligned_cols=73 Identities=34% Similarity=0.621 Sum_probs=59.0
Q ss_pred CCCEEEEEEEEeeCCCeeEEEE-CCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852 21 EQPALFTCKVEGHPLPTMTWQK-DGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96 (579)
Q Consensus 21 G~~~~l~C~~~~~~~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v 96 (579)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+.... ...+|.|.++..+|+|.|+|.|.|..|....++.+.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVY---DNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEe---cCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 7899999999999999999997 66666544433222 2357999999999999999999999998877776654
No 159
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.39 E-value=1.2e-12 Score=92.64 Aligned_cols=67 Identities=13% Similarity=0.183 Sum_probs=52.5
Q ss_pred CeeecCCCceeeecCCCeEEEEEEEeeCCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS 486 (579)
Q Consensus 408 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 486 (579)
|.+...+....+.+|+.++|.|.+.+.|.+ .+.|+++|..+..+
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~----------------------------------- 45 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETT----------------------------------- 45 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeecc-----------------------------------
Confidence 345556666789999999999999988864 79999999877211
Q ss_pred ceeeeeeeCCeeEEEEeecccccceeEEEEEEeC
Q psy16852 487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENV 520 (579)
Q Consensus 487 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 520 (579)
...|+|.++ .+|+|.|+|.|.|.
T Consensus 46 ----------~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 46 ----------TNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred ----------CCeEEEeec-ccCCEEeEEECCCC
Confidence 123788888 88899999999875
No 160
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.38 E-value=2.2e-12 Score=93.77 Aligned_cols=81 Identities=25% Similarity=0.361 Sum_probs=57.2
Q ss_pred CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEE
Q psy16852 422 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL 501 (579)
Q Consensus 422 g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~ 501 (579)
|+.+.|.|.+.|.|.|.+.|+|++.. ..... +..-. ..+.+ .....+.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~---~~~~~-------------~~~~~--~~~~~------------~~~~~~~L~ 50 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHG---KENLI-------------MRPNH--VRGNV------------VVTNIGQLV 50 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCC---Cccee-------------ecCCc--ccCCE------------EEccccEEE
Confidence 78999999999999999999997421 00000 00000 00001 011235699
Q ss_pred EeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 502 ISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 502 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 51 I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 81 (81)
T cd05765 51 IYNAQPQDAGLYTCTARNSGGLLRANFPLSV 81 (81)
T ss_pred EccCCcccCEEEEEEEecCCceEEEEEEEeC
Confidence 9999999999999999999999999998874
No 161
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.38 E-value=2.8e-12 Score=93.24 Aligned_cols=76 Identities=34% Similarity=0.611 Sum_probs=57.1
Q ss_pred CCCEEEEEEEEeeCCCeeEEEECCE---E-ecCCCCE-EEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEE
Q psy16852 21 EQPALFTCKVEGHPLPTMTWQKDGT---E-LHATEHY-LITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLI 95 (579)
Q Consensus 21 G~~~~l~C~~~~~~~~~v~W~~~g~---~-~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~ 95 (579)
|+.++|.|.+.|.|.|.+.|||++. . +.....+ ..........|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 7899999999999999999999742 1 1111111 111122346899999999999999999999999888877765
Q ss_pred E
Q psy16852 96 V 96 (579)
Q Consensus 96 v 96 (579)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 4
No 162
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.37 E-value=1.8e-12 Score=92.37 Aligned_cols=67 Identities=30% Similarity=0.530 Sum_probs=53.3
Q ss_pred EEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCC----CCCEEEEEEEEcCCeeeEE
Q psy16852 24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTK----EDIGVYTCKATNIGGVATC 90 (579)
Q Consensus 24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~~~~~~g~~~~ 90 (579)
++|.|.+.|.|.|.|+|+|+|..+.......+......+.|.|..+.. +|+|.|+|.|.|..|...+
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 579999999999999999999988654333344444557888888754 7999999999999997654
No 163
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.37 E-value=4.5e-12 Score=90.03 Aligned_cols=66 Identities=23% Similarity=0.370 Sum_probs=47.8
Q ss_pred eEEEEEEEeeCCCeEEEeeCCEEcCC--CCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEE
Q psy16852 425 ATLKATVTGRPTPSICWYRGKEEILP--DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLI 502 (579)
Q Consensus 425 ~~l~C~~~g~p~~~v~W~~~~~~l~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i 502 (579)
+.|.|.+.|+|.|.|+|+++|..+.. +.++.+ ....+.|.|
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~-------------------------------------~~~~~~L~i 43 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSM-------------------------------------RRRSGTLVI 43 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEE-------------------------------------eCCCceEEE
Confidence 47999999999999999999987632 222221 112234777
Q ss_pred eecc----cccceeEEEEEEeCCeeEEEE
Q psy16852 503 SKIT----RDQIGDVTCRAENVAGSVTCT 527 (579)
Q Consensus 503 ~~~~----~~d~G~Y~C~a~n~~g~~~~~ 527 (579)
..+. .+|+|.|+|.|.|.+|.....
T Consensus 44 ~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 44 DFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred eccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 7653 256999999999999976543
No 164
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.37 E-value=3.8e-12 Score=90.38 Aligned_cols=68 Identities=25% Similarity=0.477 Sum_probs=51.9
Q ss_pred EEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCC----CCCCEEEEEEEEcCCeeeEEE
Q psy16852 24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPT----KEDIGVYTCKATNIGGVATCS 91 (579)
Q Consensus 24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~----~~d~G~Y~C~~~~~~g~~~~~ 91 (579)
+.|.|.+.|.|.|.|+|+|+|..+......+.......++|.|..+. .+|+|.|+|.|.|..|...++
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 47999999999999999999997743333333334445789998764 357999999999999976653
No 165
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.37 E-value=1.1e-11 Score=89.90 Aligned_cols=77 Identities=23% Similarity=0.333 Sum_probs=57.4
Q ss_pred CCCEEEEEEEEeeCCCeeEEEECCEEecCCCCE--EEEEe--CCEEEEEEcCCCCCCCEEEEEEEEcCCe--eeEEEEEE
Q psy16852 21 EQPALFTCKVEGHPLPTMTWQKDGTELHATEHY--LITTV--ESVSTLEIINPTKEDIGVYTCKATNIGG--VATCSANL 94 (579)
Q Consensus 21 G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~--~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~~~g--~~~~~~~~ 94 (579)
|++++|+|.+.+.|.+.+.|+++++........ ..... ...+.|.|.+++.+|+|.|+|.|.|..+ ....++.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 899999999999888999999987653221111 11111 1257899999999999999999998765 55666777
Q ss_pred EEE
Q psy16852 95 IVL 97 (579)
Q Consensus 95 ~v~ 97 (579)
+|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 764
No 166
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.37 E-value=9e-12 Score=92.38 Aligned_cols=82 Identities=23% Similarity=0.421 Sum_probs=57.6
Q ss_pred CeeecCCCceeeec---CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852 408 PKFTKPLKPVIAEA---QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 484 (579)
Q Consensus 408 p~~~~~~~~~~~~~---g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~ 484 (579)
|.|...+....+.. |+.+.|.|.+.|.|.|.++|++++..+..........
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~-------------------------- 55 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSL-------------------------- 55 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEE--------------------------
Confidence 44555555544433 4579999999999999999999998874332211111
Q ss_pred ecceeeeeeeCCeeEEEEeeccc-ccceeEEEEEEeCCeeEEE
Q psy16852 485 SSTETKIMTDGNRSVLLISKITR-DQIGDVTCRAENVAGSVTC 526 (579)
Q Consensus 485 ~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~a~n~~g~~~~ 526 (579)
....|.|.++.. +|+|.|+|.|.|.+|....
T Consensus 56 -----------~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 56 -----------VGGNLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred -----------ECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 012388887764 8999999999999997543
No 167
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.37 E-value=3.8e-12 Score=87.89 Aligned_cols=70 Identities=26% Similarity=0.332 Sum_probs=56.3
Q ss_pred EEEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEE
Q psy16852 229 VTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298 (579)
Q Consensus 229 ~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v 298 (579)
+.|.|.+.|.|.|++.|+|+|.++.............|.|.++..+|+|.|+|.|.|..........+++
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence 4799999999999999999999987653222223457999999999999999999998777666665554
No 168
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.36 E-value=3.4e-12 Score=93.07 Aligned_cols=81 Identities=15% Similarity=0.113 Sum_probs=59.9
Q ss_pred CCCeEEEEEEEee--CCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeE
Q psy16852 422 QSPATLKATVTGR--PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSV 499 (579)
Q Consensus 422 g~~~~l~C~~~g~--p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~ 499 (579)
|+.++|.|.+.|. |.|.+.|++++..+....... . ... ........+.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~-------~------~~~-----------------~~~~~~~~s~ 50 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMV-------T------RQS-----------------LSEATELSST 50 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEee-------c------ccc-----------------cccceEEEEE
Confidence 7899999999999 888999999876553211000 0 000 0001223567
Q ss_pred EEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 500 LLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 500 l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
|+|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 51 L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v 83 (84)
T cd05742 51 LTIPNATLKDSGTYTCAASSGTMDQKESTKVNI 83 (84)
T ss_pred EEECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence 999999999999999999999999999998876
No 169
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.36 E-value=4.7e-12 Score=90.38 Aligned_cols=75 Identities=24% Similarity=0.357 Sum_probs=54.1
Q ss_pred eEEEEEEEe-eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEe
Q psy16852 425 ATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS 503 (579)
Q Consensus 425 ~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~ 503 (579)
+.|.|.+.+ .|.+.+.|+++|..+....+... .+ .+......+.|.|.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~---------~~----------------------~~~~~~~~~~L~I~ 49 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDN---------KI----------------------KIRKKKKSSELQIS 49 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCc---------eE----------------------EEEeCCcEEEEEEC
Confidence 479999874 68889999999988753321000 00 11112345669999
Q ss_pred ecccccceeEEEEEEeCCeeEEEEEEE
Q psy16852 504 KITRDQIGDVTCRAENVAGSVTCTATL 530 (579)
Q Consensus 504 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l 530 (579)
+++.+|+|.|+|.|.|..|....++.+
T Consensus 50 ~~~~~DsG~Y~C~a~N~~g~~~~~~~~ 76 (76)
T cd05895 50 KASLADNGEYKCMVSSKLGNDSVTANV 76 (76)
T ss_pred cCCcccCEEEEEEEEeCCCceeEEEeC
Confidence 999999999999999999998877653
No 170
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.36 E-value=5.8e-12 Score=89.45 Aligned_cols=68 Identities=28% Similarity=0.529 Sum_probs=51.7
Q ss_pred EEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCC----CCCEEEEEEEEcCCeeeEEE
Q psy16852 24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTK----EDIGVYTCKATNIGGVATCS 91 (579)
Q Consensus 24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~~~~~~g~~~~~ 91 (579)
+.|.|.+.|.|.|+|+|+|+|..+..............++|.|..+.. .|+|.|+|.|.|..|...++
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence 579999999999999999999987543333333334446777876654 47899999999999976653
No 171
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.35 E-value=4.7e-12 Score=92.34 Aligned_cols=76 Identities=24% Similarity=0.286 Sum_probs=59.3
Q ss_pred CCCEEEEEEEEee--CCCeeEEEECCEEecCCCCE---E--EEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEE
Q psy16852 21 EQPALFTCKVEGH--PLPTMTWQKDGTELHATEHY---L--ITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSAN 93 (579)
Q Consensus 21 G~~~~l~C~~~~~--~~~~v~W~~~g~~~~~~~~~---~--~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~ 93 (579)
|++++|.|.+.+. |.+.+.|++++..+...... . .......+.|+|.+++.+|+|.|+|.|.|..|....++.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7999999999998 77899999988765322110 0 011123578999999999999999999999998888888
Q ss_pred EEE
Q psy16852 94 LIV 96 (579)
Q Consensus 94 ~~v 96 (579)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 776
No 172
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.35 E-value=1.1e-11 Score=91.97 Aligned_cols=83 Identities=19% Similarity=0.268 Sum_probs=61.3
Q ss_pred ccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCE--------EecCCCCEEEEEe-CCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 12 KIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGT--------ELHATEHYLITTV-ESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 12 ~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~--------~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
.+.++.+.+|++++|.|.+.+.|.+.+.||+.+. ....+.++..... ....+|+|.+++.+|+|.|+|.+.
T Consensus 3 ~~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~ 82 (95)
T cd07701 3 LTQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLF 82 (95)
T ss_pred ccceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeE
Confidence 4678999999999999999999989999986432 2223445544222 345789999999999999999998
Q ss_pred cCCeeeEEEEEEE
Q psy16852 83 NIGGVATCSANLI 95 (579)
Q Consensus 83 ~~~g~~~~~~~~~ 95 (579)
+..+ ....+.|+
T Consensus 83 t~~~-~~~~~~l~ 94 (95)
T cd07701 83 TMPV-KTSKAYLT 94 (95)
T ss_pred eecC-ccEEEEEE
Confidence 7433 24444544
No 173
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.34 E-value=2.3e-11 Score=89.36 Aligned_cols=88 Identities=25% Similarity=0.353 Sum_probs=71.0
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCC-eeEEEECCEEecCC--CCEEEEEe----CCEEEEEEcCCCCCC-CEEE
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLP-TMTWQKDGTELHAT--EHYLITTV----ESVSTLEIINPTKED-IGVY 77 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~-~v~W~~~g~~~~~~--~~~~~~~~----~~~~~L~i~~~~~~d-~G~Y 77 (579)
||.+ ...+.+.+.+|+.++|.|.+.+.|.| .|.|.+++..+..+ .++.+... +..++|.|.++...| .|.|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 6655 67888999999999999999877776 68999988877543 56666544 357899999998766 8999
Q ss_pred EEEEEcCCeeeEEEEEE
Q psy16852 78 TCKATNIGGVATCSANL 94 (579)
Q Consensus 78 ~C~~~~~~g~~~~~~~~ 94 (579)
.|.|.|..|.....+.|
T Consensus 81 ~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 81 NCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEeCCccceEEEEe
Confidence 99999999988776554
No 174
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.34 E-value=1.4e-11 Score=89.24 Aligned_cols=81 Identities=17% Similarity=0.223 Sum_probs=57.0
Q ss_pred CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEE
Q psy16852 422 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL 501 (579)
Q Consensus 422 g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~ 501 (579)
|++++|.|.+.|.|.+.+.|++.+............ ..+......++|.
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~s~L~ 49 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEE-------------------------------VKVPATTLRSTLT 49 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEE-------------------------------EecCCcEEEEEEE
Confidence 789999999999999999999877543111000000 0011122356799
Q ss_pred EeecccccceeEEEEEEeCCe--eEEEEEEEEEe
Q psy16852 502 ISKITRDQIGDVTCRAENVAG--SVTCTATLSLL 533 (579)
Q Consensus 502 i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~l~v~ 533 (579)
|.+++.+|+|.|+|.|.|..+ ....++.|+|.
T Consensus 50 I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~ 83 (84)
T cd05861 50 FPHATVEDSGTYECAAHESTQDQKAFKKVNITVH 83 (84)
T ss_pred ECCCCcCCCEEEEEEEEECccCcceeEEEEEEEe
Confidence 999999999999999999877 56666676653
No 175
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.32 E-value=1.1e-11 Score=88.42 Aligned_cols=70 Identities=26% Similarity=0.443 Sum_probs=54.6
Q ss_pred EEEEEEEEe-eCCCeeEEEECCEEecCCC----CEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEE
Q psy16852 24 ALFTCKVEG-HPLPTMTWQKDGTELHATE----HYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSAN 93 (579)
Q Consensus 24 ~~l~C~~~~-~~~~~v~W~~~g~~~~~~~----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~ 93 (579)
+.|+|.+.+ .|.+.+.||++|+.+.... ++..........|.|.+++.+|+|.|+|.+.|..|....++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 479999864 5778999999999886432 223333345688999999999999999999999988776554
No 176
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.32 E-value=2.5e-11 Score=87.04 Aligned_cols=69 Identities=20% Similarity=0.327 Sum_probs=56.5
Q ss_pred ccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852 12 KIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI 84 (579)
Q Consensus 12 ~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 84 (579)
.|.+..+.+|+++.|.|.+.+ +.+.+.|++||..+..+.. +..... ..|.|.+++.+|+|.|+|.+.+.
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~-r~~~~~--~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESA-KYLLYR--DGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCc-eEEEEC--CcEEEeCCCHHHCEEEEEEEEec
Confidence 578899999999999999854 5679999999999976532 222222 46999999999999999999865
No 177
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.32 E-value=9.4e-12 Score=91.06 Aligned_cols=79 Identities=23% Similarity=0.422 Sum_probs=64.2
Q ss_pred ccccCceeeeCCCCEEEEEEEEe-eCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeee
Q psy16852 10 IEKIQPVVSHQEQPALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA 88 (579)
Q Consensus 10 ~~~p~~~~v~~G~~~~l~C~~~~-~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~ 88 (579)
+..|..+.+.+|+.++|.|.+.+ .|.+.+.|++++..+.... ......|.|.+++.+|+|.|+|.+.|..|..
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~------~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~ 78 (85)
T cd05754 5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA------MDFNGILTIRNVQLSDAGTYVCTGSNMLDTD 78 (85)
T ss_pred ecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc------cccCCEEEECCCCHHHCEEEEEEEeccCCeE
Confidence 45678889999999999999965 6778999999987654321 1123689999999999999999999999988
Q ss_pred EEEEEE
Q psy16852 89 TCSANL 94 (579)
Q Consensus 89 ~~~~~~ 94 (579)
..++.|
T Consensus 79 ~~~~~l 84 (85)
T cd05754 79 EATATL 84 (85)
T ss_pred eEEEEE
Confidence 876654
No 178
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.31 E-value=8.7e-12 Score=92.08 Aligned_cols=83 Identities=23% Similarity=0.374 Sum_probs=63.2
Q ss_pred ccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCC--CEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC-eee
Q psy16852 12 KIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE--HYLITTVESVSTLEIINPTKEDIGVYTCKATNIG-GVA 88 (579)
Q Consensus 12 ~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-g~~ 88 (579)
+|..+.+.+|+++.|.|.+.+ |.+.+.||+++..+.... ..+.... ...|.|.+++.+|+|.|+|.+.+.. +..
T Consensus 2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~ 78 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT--EDGLLIRSVSPADAGVYTCQSVEHGFKQT 78 (89)
T ss_pred cceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc--CCCEEEccCCHHHCEEEEEEEecCcccee
Confidence 467788999999999999976 777999999998776542 1222222 2459999999999999999998654 445
Q ss_pred EEEEEEEEE
Q psy16852 89 TCSANLIVL 97 (579)
Q Consensus 89 ~~~~~~~v~ 97 (579)
..+..|.|.
T Consensus 79 ~~~~~l~V~ 87 (89)
T cd04979 79 LATYSLNVL 87 (89)
T ss_pred EeEEEEEEe
Confidence 556666664
No 179
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.31 E-value=9.3e-12 Score=89.54 Aligned_cols=77 Identities=25% Similarity=0.438 Sum_probs=51.3
Q ss_pred eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852 425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK 504 (579)
Q Consensus 425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~ 504 (579)
++|.|.+.|+|.|.+.|++++.......... ....|++ .+. ..+.|.|.+
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~------------------~~~~~r~---------~~~---~~~~L~I~~ 50 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHT------------------CCLAGRI---------QLL---SNGSLLIKH 50 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccc------------------cccCCCE---------EEe---cCCeEEECc
Confidence 5799999999999999999653321110000 0011111 111 124599999
Q ss_pred cccccceeEEEEEEeCCeeE-EEEEEEE
Q psy16852 505 ITRDQIGDVTCRAENVAGSV-TCTATLS 531 (579)
Q Consensus 505 ~~~~d~G~Y~C~a~n~~g~~-~~~~~l~ 531 (579)
+..+|+|.|+|.|.|..|.+ ...+.|+
T Consensus 51 v~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 78 (79)
T cd05734 51 VLEEDSGYYLCKVSNDVGADASKSMVLT 78 (79)
T ss_pred CCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence 99999999999999999976 5566665
No 180
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.30 E-value=4.7e-11 Score=87.86 Aligned_cols=81 Identities=22% Similarity=0.384 Sum_probs=63.3
Q ss_pred eeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCe
Q psy16852 418 IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR 497 (579)
Q Consensus 418 ~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~ 497 (579)
.+..|+.+.|.|.+.+.|.+.+.|++++..+......... ......
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~----------------------------------~~~~~~ 50 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGY----------------------------------KVRKKK 50 (85)
T ss_pred EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEE----------------------------------EccCcE
Confidence 4667999999999999999999999998877543321110 001123
Q ss_pred eEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 498 SVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 498 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
..|.|.+++.+|.|.|.|.|.|..|..+.++.|.|
T Consensus 51 ~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~v 85 (85)
T cd05729 51 WTLILESVVPSDSGKYTCIVENKYGSINHTYKVDV 85 (85)
T ss_pred EEEEEeECCcccCEEEEEEEEECCceEEEEEEEeC
Confidence 45999999999999999999999999988888864
No 181
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.30 E-value=9.6e-12 Score=89.72 Aligned_cols=72 Identities=22% Similarity=0.325 Sum_probs=56.9
Q ss_pred ccccCceeeeCCCCEEEEEEEEe-eCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeee
Q psy16852 10 IEKIQPVVSHQEQPALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA 88 (579)
Q Consensus 10 ~~~p~~~~v~~G~~~~l~C~~~~-~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~ 88 (579)
+.++....|.+|++++|+|.+.+ .+...+.|||+|..+... .....|.|.+++.+|+|.|+|.+.+..+..
T Consensus 3 ~l~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~--------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~ 74 (83)
T cd05753 3 LLQVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS--------HSNSNLSIPQATLSDSGSYHCSGIIGSYDY 74 (83)
T ss_pred EEECCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc--------CCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence 44555667999999999999853 455689999999876421 123689999999999999999999987744
Q ss_pred E
Q psy16852 89 T 89 (579)
Q Consensus 89 ~ 89 (579)
.
T Consensus 75 ~ 75 (83)
T cd05753 75 S 75 (83)
T ss_pred c
Confidence 3
No 182
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.30 E-value=5.6e-11 Score=87.69 Aligned_cols=71 Identities=17% Similarity=0.279 Sum_probs=56.0
Q ss_pred cCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEe--------cCCCCEEEEEe-CCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 13 IQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTEL--------HATEHYLITTV-ESVSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 13 p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~--------~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
..++.+.+|+++.|.|.+.+.|.+.+.|++++..+ ....++.+... ....+|.|.+++.+|+|.|+|.+..
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 45789999999999999999999999999987643 12233332222 2358999999999999999999976
No 183
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.29 E-value=1.6e-11 Score=89.80 Aligned_cols=77 Identities=17% Similarity=0.284 Sum_probs=60.5
Q ss_pred CCCceeeecCCCeEEEEEEEe-eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeee
Q psy16852 413 PLKPVIAEAQSPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKI 491 (579)
Q Consensus 413 ~~~~~~~~~g~~~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~ 491 (579)
.+....+.+|+.++|.|.+.+ .|.+.+.|++++..+.... .
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~---~----------------------------------- 48 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA---M----------------------------------- 48 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc---c-----------------------------------
Confidence 345567889999999999975 7888999999876542110 0
Q ss_pred eeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEE
Q psy16852 492 MTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATL 530 (579)
Q Consensus 492 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 530 (579)
...+.|.|.+++.+|+|.|+|.|.|..|...+++.|
T Consensus 49 ---~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l 84 (85)
T cd05754 49 ---DFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL 84 (85)
T ss_pred ---ccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence 012359999999999999999999999999988775
No 184
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.28 E-value=7e-11 Score=86.93 Aligned_cols=80 Identities=24% Similarity=0.332 Sum_probs=64.4
Q ss_pred eeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEE-EEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEE
Q psy16852 16 VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLI-TTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANL 94 (579)
Q Consensus 16 ~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~ 94 (579)
..+.+|+.+.|.|.+.+.|.+.+.|++++..+........ ........|.|.+++.+|+|.|+|.+.|..|....+..|
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 4577899999999999999899999999998765443322 222345689999999999999999999998887766665
Q ss_pred E
Q psy16852 95 I 95 (579)
Q Consensus 95 ~ 95 (579)
.
T Consensus 84 ~ 84 (85)
T cd05729 84 D 84 (85)
T ss_pred e
Confidence 4
No 185
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.27 E-value=6.1e-11 Score=85.08 Aligned_cols=68 Identities=15% Similarity=0.213 Sum_probs=52.8
Q ss_pred CCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCC-CeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852 414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN-GHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM 492 (579)
Q Consensus 414 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~ 492 (579)
|....+..|+++.|.|.+. .|.+++.|+++|.++..+. ++.+ .+
T Consensus 3 P~~~~v~~G~~v~L~C~~~-~~~~~i~W~~ng~~i~~~~~r~~~----~~------------------------------ 47 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPK-SNLARVVWKFDGKVLTPESAKYLL----YR------------------------------ 47 (87)
T ss_pred cceEEEECCCCEEEEEECC-CCCCeEEEEECCEECCCCCceEEE----EC------------------------------
Confidence 4566789999999999986 4778999999999986553 2211 11
Q ss_pred eeCCeeEEEEeecccccceeEEEEEEeCC
Q psy16852 493 TDGNRSVLLISKITRDQIGDVTCRAENVA 521 (579)
Q Consensus 493 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 521 (579)
..|.|.+++.+|+|.|+|.|.+..
T Consensus 48 -----~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 48 -----DGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred -----CcEEEeCCCHHHCEEEEEEEEecc
Confidence 128899999999999999998763
No 186
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.24 E-value=1.6e-11 Score=89.30 Aligned_cols=74 Identities=15% Similarity=0.154 Sum_probs=57.3
Q ss_pred cCceeeeCCCCEEEEEEE-EeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852 13 IQPVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGG 86 (579)
Q Consensus 13 p~~~~v~~G~~~~l~C~~-~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g 86 (579)
.+.+.+.+|+.+.|.|.. .+.|.+.|.|++++..+......+......++.|.|.+++.+|+|.|+|.|+|...
T Consensus 10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~ 84 (96)
T cd05727 10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSS 84 (96)
T ss_pred cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEeccc
Confidence 455789999999999986 56788999999998764221111223444468999999999999999999998653
No 187
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.24 E-value=7.4e-11 Score=87.57 Aligned_cols=91 Identities=18% Similarity=0.230 Sum_probs=59.4
Q ss_pred CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852 415 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD 494 (579)
Q Consensus 415 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 494 (579)
.+..+.+|++++|.|.+.+.|.+.+.|++.+..+. .. .+-.....++|... ...
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l-------~~-----------~~~~~~~~~r~~~~--------~~~ 58 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTL-------YF-----------DDKKALRDNRIELV--------RAS 58 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEE-------EE-----------cCcccccCCCEEEE--------ECC
Confidence 56779999999999999999999999997432210 00 00000011222110 112
Q ss_pred CCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
.....|.|.+++.+|+|.|+|.+.+. .....++.|.|
T Consensus 59 ~~~~sL~I~~v~~~DsG~Y~C~~~t~-~~~~~~~~l~v 95 (95)
T cd07701 59 WHELSISISDVSLSDEGQYTCSLFTM-PVKTSKAYLTV 95 (95)
T ss_pred CCcEEEEECcCCcccCEEEEEEeEee-cCccEEEEEEC
Confidence 34467999999999999999999985 44466666654
No 188
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.23 E-value=3.3e-11 Score=86.66 Aligned_cols=69 Identities=30% Similarity=0.465 Sum_probs=51.1
Q ss_pred EEEEEEEEeeCCCeeEEEECCEEec--------CCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeee-EEEEEE
Q psy16852 24 ALFTCKVEGHPLPTMTWQKDGTELH--------ATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA-TCSANL 94 (579)
Q Consensus 24 ~~l~C~~~~~~~~~v~W~~~g~~~~--------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~-~~~~~~ 94 (579)
++|.|.+.|.|.|.+.|++++.... ...++.. ....+|.|.++..+|+|.|+|.|.|..|.. +.++.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~---~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l 77 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQL---LSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL 77 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEE---ecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence 5899999999999999999753221 1222222 123689999999999999999999998866 344444
Q ss_pred E
Q psy16852 95 I 95 (579)
Q Consensus 95 ~ 95 (579)
.
T Consensus 78 ~ 78 (79)
T cd05734 78 T 78 (79)
T ss_pred e
Confidence 3
No 189
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.23 E-value=1.4e-10 Score=85.67 Aligned_cols=89 Identities=17% Similarity=0.198 Sum_probs=58.5
Q ss_pred CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeee-ee
Q psy16852 415 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKI-MT 493 (579)
Q Consensus 415 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~-~~ 493 (579)
.+.++.+|+++.|.|.+.+.|.|.|.|++++..+.......... .++| .+ ..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~------------------~~r~---------~~~~~ 57 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALR------------------DNRI---------QLVKS 57 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEe------------------CCeE---------EEEeC
Confidence 56779999999999999999999999999875432111111000 0011 11 11
Q ss_pred eCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEE
Q psy16852 494 DGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531 (579)
Q Consensus 494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 531 (579)
......|.|.++..+|+|.|+|.|.. .-...+.+.|.
T Consensus 58 ~~~~~~L~I~nV~~~D~G~YtC~~~t-~~~~~~~~~~~ 94 (95)
T cd05882 58 TPTELIISISNVQLSDEGEYTCSIFT-MPVRTAKATVT 94 (95)
T ss_pred CCceEEEEECCCCcccCEEEEEEEEe-eccccEEEEEE
Confidence 22346799999999999999999987 22344444444
No 190
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.23 E-value=7.5e-11 Score=86.43 Aligned_cols=79 Identities=18% Similarity=0.289 Sum_probs=60.7
Q ss_pred ceeeecCCCeEEEEEEEe-----eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceee
Q psy16852 416 PVIAEAQSPATLKATVTG-----RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK 490 (579)
Q Consensus 416 ~~~~~~g~~~~l~C~~~g-----~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~ 490 (579)
.+.+..|+...|.|...+ +|.|.+.|+|++.++....+...
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~---------------------------------- 49 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV---------------------------------- 49 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe----------------------------------
Confidence 356778999999998643 35789999999998865432111
Q ss_pred eeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 491 IMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 491 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
..+.|.|.++..+|+|.|+|.|.|..|.....+...+.
T Consensus 50 -----~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~t~~ 87 (92)
T cd05757 50 -----KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTRTIS 87 (92)
T ss_pred -----cCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEEEEEE
Confidence 22349999999999999999999999987777666553
No 191
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.22 E-value=4.8e-11 Score=87.46 Aligned_cols=78 Identities=26% Similarity=0.339 Sum_probs=60.3
Q ss_pred ceeeeCCCCEEEEEEEEe-----eCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeE
Q psy16852 15 PVVSHQEQPALFTCKVEG-----HPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVAT 89 (579)
Q Consensus 15 ~~~v~~G~~~~l~C~~~~-----~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~ 89 (579)
...+.+|+...|+|...+ +|.+.+.||||++++....... . ....|.|.+++.+|+|.|+|.+.|..+...
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~-~---~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~ 79 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF-V---KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQ 79 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE-e---cCCEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence 467899999999998643 2467999999999987654332 1 447899999999999999999998876555
Q ss_pred EEEEEEE
Q psy16852 90 CSANLIV 96 (579)
Q Consensus 90 ~~~~~~v 96 (579)
..++.++
T Consensus 80 ~~~t~t~ 86 (92)
T cd05757 80 YNVTRTI 86 (92)
T ss_pred EEEEEEE
Confidence 5444433
No 192
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.21 E-value=3.1e-10 Score=82.41 Aligned_cols=88 Identities=15% Similarity=0.190 Sum_probs=68.1
Q ss_pred ceeeecCCCeEEEEEEEeeCCCe-EEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852 416 PVIAEAQSPATLKATVTGRPTPS-ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD 494 (579)
Q Consensus 416 ~~~~~~g~~~~l~C~~~g~p~~~-v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 494 (579)
...+.+|+.+.|.|.++++|+|+ +.|.+++..+.......+.. .... -.
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~--------------~~~~----------------~~ 61 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKS--------------RNES----------------NN 61 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEE--------------eccC----------------ce
Confidence 45689999999999999999997 99999987764332211111 0000 01
Q ss_pred CCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
...+.|.+.+++.+|+|.|+|.|.|..+....++.|.|+
T Consensus 62 rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v~ 100 (101)
T cd05860 62 RYVSELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEEe
Confidence 245779999999999999999999999999999999875
No 193
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.21 E-value=1e-10 Score=86.33 Aligned_cols=83 Identities=17% Similarity=0.269 Sum_probs=59.6
Q ss_pred CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852 415 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD 494 (579)
Q Consensus 415 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 494 (579)
....+.+|+.+.|.|.+.+ |.+++.|++++..+....... + ++..
T Consensus 4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~----------------------~-----------~~~~- 48 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPE----------------------E-----------RLLV- 48 (89)
T ss_pred eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcC----------------------c-----------eEEE-
Confidence 4456889999999999986 888999999987764432100 0 0000
Q ss_pred CCeeEEEEeecccccceeEEEEEEeCC-eeEEEEEEEEEe
Q psy16852 495 GNRSVLLISKITRDQIGDVTCRAENVA-GSVTCTATLSLL 533 (579)
Q Consensus 495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~~~~~~l~v~ 533 (579)
....|.|.+++.+|+|.|+|.|.|.. +....+..|.|.
T Consensus 49 -~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~ 87 (89)
T cd04979 49 -TEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVL 87 (89)
T ss_pred -cCCCEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEe
Confidence 11228999999999999999998764 466677777764
No 194
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.19 E-value=6.2e-11 Score=86.24 Aligned_cols=74 Identities=15% Similarity=0.153 Sum_probs=55.4
Q ss_pred CCceeeecCCCeEEEEEE-EeeCCCeEEEeeCCEEc--CCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceee
Q psy16852 414 LKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEI--LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK 490 (579)
Q Consensus 414 ~~~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~l--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~ 490 (579)
..+..+.+|+.+.|.|.. .|.|.+.+.|++++.++ ..+.+..+
T Consensus 10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~---------------------------------- 55 (96)
T cd05727 10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFV---------------------------------- 55 (96)
T ss_pred cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEE----------------------------------
Confidence 345678899999999975 68899999999997654 22222221
Q ss_pred eeeeCCeeEEEEeecccccceeEEEEEEeCCeeE
Q psy16852 491 IMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV 524 (579)
Q Consensus 491 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 524 (579)
+...+.|.|.+++.+|+|+|+|.|+|..+..
T Consensus 56 ---~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 56 ---SQTNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred ---eCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 1223449999999999999999999987554
No 195
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.19 E-value=1.4e-10 Score=84.89 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=54.1
Q ss_pred eeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecC--------------CCCEEEEE---eCCEEEEEEcCCCCCCCEEEE
Q psy16852 16 VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA--------------TEHYLITT---VESVSTLEIINPTKEDIGVYT 78 (579)
Q Consensus 16 ~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~--------------~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~ 78 (579)
+.+.+|++|+|+|.+.+.+.+.+.||+++..... ..++.... ..+...|+|.+++.+|+|.|+
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 5688999999999998888889999987643211 12222222 334578999999999999999
Q ss_pred EEEEcCCee
Q psy16852 79 CKATNIGGV 87 (579)
Q Consensus 79 C~~~~~~g~ 87 (579)
|.+.|..+.
T Consensus 82 C~v~~~~~~ 90 (94)
T cd07690 82 CEVEDKKEE 90 (94)
T ss_pred EEECCccce
Confidence 999876543
No 196
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.19 E-value=1.5e-10 Score=84.11 Aligned_cols=79 Identities=32% Similarity=0.579 Sum_probs=60.0
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG 85 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 85 (579)
+|.+..++ ..+.+|+.++|+|.+.+.|.+.+.|++++..+..... .|.|.+++.+|+|.|+|.+.+..
T Consensus 1 kP~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~----------~~~~~~~~~~~~g~y~C~~~~~~ 68 (80)
T PF13895_consen 1 KPVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN----------GLFIPNVSPEDSGNYTCRASNGS 68 (80)
T ss_dssp --EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS----------EEEESSEEGGGTEEEEEEEEETT
T ss_pred CcEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee----------eeeeeeeccccCEEEEEEEEeCC
Confidence 35555544 6689999999999999888889999999988763322 17788999999999999999865
Q ss_pred e-eeEEEEEEEE
Q psy16852 86 G-VATCSANLIV 96 (579)
Q Consensus 86 g-~~~~~~~~~v 96 (579)
+ ..+..+.|+|
T Consensus 69 ~~~~s~~~~v~V 80 (80)
T PF13895_consen 69 GSNTSTSVNVTV 80 (80)
T ss_dssp EEEEEEEEEEEE
T ss_pred CCeEeeeEEeeC
Confidence 4 3444555543
No 197
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.17 E-value=6.9e-10 Score=81.10 Aligned_cols=71 Identities=13% Similarity=0.259 Sum_probs=56.6
Q ss_pred cCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEe--------cCCCCEEEEE-eCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 13 IQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTEL--------HATEHYLITT-VESVSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 13 p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~--------~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
-+++.+.+|++++|+|.+.+.....+.|++.+..+ ..+.++.... .+...+|+|.+++.+|+|.|+|++..
T Consensus 4 ~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 4 TEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred cCceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 35689999999999999987766678998866443 3455666554 34577899999999999999999965
No 198
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.16 E-value=3.7e-10 Score=84.54 Aligned_cols=83 Identities=20% Similarity=0.349 Sum_probs=59.1
Q ss_pred cCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEe--------cCCCCEEEEE-eCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 13 IQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTEL--------HATEHYLITT-VESVSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 13 p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~--------~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
+.++.+.+|++++|.|.+.+.+.+.+.|++.+..+ ....++.... ......|+|.+++.+|+|.|+|.+.+
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 83 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT 83 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence 56788999999999999988777899998633221 1223444321 23457899999999999999999986
Q ss_pred CCeeeEEEEEEEE
Q psy16852 84 IGGVATCSANLIV 96 (579)
Q Consensus 84 ~~g~~~~~~~~~v 96 (579)
.. ....++.|+|
T Consensus 84 ~~-~~~~~~~~~v 95 (95)
T cd05717 84 MP-VQTAKATVTV 95 (95)
T ss_pred CC-CceEEEEEEC
Confidence 54 2344455543
No 199
>smart00409 IG Immunoglobulin.
Probab=99.15 E-value=1.1e-09 Score=80.79 Aligned_cols=84 Identities=37% Similarity=0.602 Sum_probs=68.9
Q ss_pred cCceeeeCCCCEEEEEEEEeeCCCeeEEEEC-CEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEE
Q psy16852 13 IQPVVSHQEQPALFTCKVEGHPLPTMTWQKD-GTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCS 91 (579)
Q Consensus 13 p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~-g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~ 91 (579)
|..+.+.+|++++|.|.+.+.+.+.+.|+++ +..+....++..........|.|.+++.+|+|.|+|.+.+..+.....
T Consensus 1 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~ 80 (86)
T smart00409 1 PPSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST 80 (86)
T ss_pred CCcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence 4567889999999999998887789999998 888875666666655556899999999999999999999877766665
Q ss_pred EEEEE
Q psy16852 92 ANLIV 96 (579)
Q Consensus 92 ~~~~v 96 (579)
+.+.|
T Consensus 81 ~~l~V 85 (86)
T smart00409 81 TTLTV 85 (86)
T ss_pred EEEEE
Confidence 55554
No 200
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.15 E-value=1.1e-09 Score=80.79 Aligned_cols=84 Identities=37% Similarity=0.602 Sum_probs=68.9
Q ss_pred cCceeeeCCCCEEEEEEEEeeCCCeeEEEEC-CEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEE
Q psy16852 13 IQPVVSHQEQPALFTCKVEGHPLPTMTWQKD-GTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCS 91 (579)
Q Consensus 13 p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~-g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~ 91 (579)
|..+.+.+|++++|.|.+.+.+.+.+.|+++ +..+....++..........|.|.+++.+|+|.|+|.+.+..+.....
T Consensus 1 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~ 80 (86)
T smart00410 1 PPSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST 80 (86)
T ss_pred CCcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence 4567889999999999998887789999998 888875666666655556899999999999999999999877766665
Q ss_pred EEEEE
Q psy16852 92 ANLIV 96 (579)
Q Consensus 92 ~~~~v 96 (579)
+.+.|
T Consensus 81 ~~l~V 85 (86)
T smart00410 81 TTLTV 85 (86)
T ss_pred EEEEE
Confidence 55554
No 201
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.14 E-value=3.5e-10 Score=82.22 Aligned_cols=77 Identities=26% Similarity=0.321 Sum_probs=57.7
Q ss_pred CCCEEEEEEEEeeC--CCeeEEEECCEEecCC---CCEEE---EEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEE
Q psy16852 21 EQPALFTCKVEGHP--LPTMTWQKDGTELHAT---EHYLI---TTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSA 92 (579)
Q Consensus 21 G~~~~l~C~~~~~~--~~~v~W~~~g~~~~~~---~~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~ 92 (579)
|++++|.|.+.+.+ ...+.|.+++...... ...+. ......+.|.|.+++.+|+|.|+|.|.|..|....++
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 89999999998755 3478999887644211 11010 1122357899999999999999999999989888888
Q ss_pred EEEEE
Q psy16852 93 NLIVL 97 (579)
Q Consensus 93 ~~~v~ 97 (579)
.|.|+
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 88885
No 202
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.13 E-value=3.3e-10 Score=83.13 Aligned_cols=79 Identities=19% Similarity=0.327 Sum_probs=57.5
Q ss_pred CceeeeCCCCEEEEEEEEeeCCCeeEEEECCE--Ee----cCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE-cCCe
Q psy16852 14 QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGT--EL----HATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT-NIGG 86 (579)
Q Consensus 14 ~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~--~~----~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~-~~~g 86 (579)
..+.+.+|++++|.|.. +.|.+.+.||+.+. .. ....++. .. ...|.|.+++.+|+|.|+|.+. +..+
T Consensus 4 ~~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~--~~--~~~L~I~~~~~~DsG~Y~C~a~~~~~~ 78 (91)
T cd05871 4 KVVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLI--HT--ERGLLLRSLQRSDAGVYTCTAVEHSFS 78 (91)
T ss_pred eEEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEE--Ee--cCeEEEeeCChhHCEEEEEEEEccCCe
Confidence 34678999999999997 47888999998432 21 1122222 22 2569999999999999999998 5666
Q ss_pred eeEEEEEEEEE
Q psy16852 87 VATCSANLIVL 97 (579)
Q Consensus 87 ~~~~~~~~~v~ 97 (579)
.....+.|+|.
T Consensus 79 ~~~~~~~l~v~ 89 (91)
T cd05871 79 QTLAKYTLHVI 89 (91)
T ss_pred EEEEEEEEEEe
Confidence 66667777775
No 203
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.13 E-value=2.2e-10 Score=82.63 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=50.5
Q ss_pred eeecCCCeEEEEEEEe-eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCC
Q psy16852 418 IAEAQSPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGN 496 (579)
Q Consensus 418 ~~~~g~~~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~ 496 (579)
.+.+|++++|.|.+.+ .+.+.+.|+|+|..+.... .
T Consensus 10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~-------------------------------------------~ 46 (83)
T cd05753 10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH-------------------------------------------S 46 (83)
T ss_pred eecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC-------------------------------------------C
Confidence 5789999999999853 5667899999987653210 1
Q ss_pred eeEEEEeecccccceeEEEEEEeCCeeE
Q psy16852 497 RSVLLISKITRDQIGDVTCRAENVAGSV 524 (579)
Q Consensus 497 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 524 (579)
.+.|.|.+++.+|+|.|+|.|.|..|+.
T Consensus 47 ~~~l~I~~~~~~dsG~Y~C~~~~~~~~~ 74 (83)
T cd05753 47 NSNLSIPQATLSDSGSYHCSGIIGSYDY 74 (83)
T ss_pred CceEEECccCHHHCEEEEEEEEeCCcee
Confidence 2348999999999999999999998853
No 204
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.12 E-value=5.2e-10 Score=81.32 Aligned_cols=83 Identities=13% Similarity=0.098 Sum_probs=58.1
Q ss_pred CCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeE
Q psy16852 422 QSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSV 499 (579)
Q Consensus 422 g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~ 499 (579)
|++++|.|.+.+.+.+ .+.|.+.+..+....... . .... ........++
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~------~---------~~~~--------------~~~~~~~~s~ 51 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVS------E---------NRRS--------------LQEHTELSST 51 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecc------c---------cccc--------------ccccceeeeE
Confidence 7899999999876644 889988776432110000 0 0000 0001234577
Q ss_pred EEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 500 LLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 500 l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
|.|.+++.+|+|.|+|.|.|..|....++.|.|+
T Consensus 52 L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V~ 85 (86)
T cd05862 52 LTIENVTLSDLGRYTCTASSGQMIAKNSTIVIVH 85 (86)
T ss_pred EEEecCCcccCEEEEEEEeecceEecccEEEEEe
Confidence 9999999999999999999999999999999875
No 205
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.12 E-value=4.4e-10 Score=82.27 Aligned_cols=86 Identities=13% Similarity=0.213 Sum_probs=56.6
Q ss_pred eeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee---e
Q psy16852 418 IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT---D 494 (579)
Q Consensus 418 ~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~---~ 494 (579)
.+.+|+.++|.|.+.+.+.+.+.|++++.....+..-. +.+..... .+++..+.. .
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~-----------l~~~~~~~----------~~~r~~~~~~~~~ 61 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGS-----------FLTKGPSK----------LNDRADSRRNLWD 61 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCE-----------EEEecccc----------cCCCCceecccCC
Confidence 46789999999999999999999998774432221111 11111100 011111111 3
Q ss_pred CCeeEEEEeecccccceeEEEEEEeCCeeE
Q psy16852 495 GNRSVLLISKITRDQIGDVTCRAENVAGSV 524 (579)
Q Consensus 495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 524 (579)
.....|+|.+++.+|+|.|.|.|.|..++.
T Consensus 62 ~g~~~L~I~~l~~sDsgtY~C~v~~~~~~~ 91 (94)
T cd07690 62 QGSFPLIIKNLKIEDSDTYICEVEDKKEEV 91 (94)
T ss_pred CCeEEEEECCCCHHHCEEEEEEECCccceE
Confidence 345679999999999999999999987764
No 206
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.11 E-value=2.4e-10 Score=78.57 Aligned_cols=63 Identities=43% Similarity=0.674 Sum_probs=51.6
Q ss_pred CCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852 20 QEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGG 86 (579)
Q Consensus 20 ~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g 86 (579)
+|+.++|.|.+.+.+.+.+.|++++..+. . .. ........|.|.+++.+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~-~-~~--~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP-E-SN--RLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC-C-CC--EEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 58999999998888888999999998887 2 11 2233457899999999999999999987653
No 207
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.10 E-value=1.2e-09 Score=81.70 Aligned_cols=91 Identities=19% Similarity=0.267 Sum_probs=58.9
Q ss_pred CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852 415 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD 494 (579)
Q Consensus 415 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 494 (579)
+...+.+|++++|.|.+.+.|.+.+.|++.+..+ +. ..+......++|... ...
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~-------~~-----------~~~~~~~~~~r~~~~--------~~~ 58 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQT-------LY-----------FNDKRALRDNRIQLV--------NFS 58 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcE-------EE-----------eccccccccCcEEEE--------cCC
Confidence 4566889999999999998888999998643211 00 001000111233221 112
Q ss_pred CCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
.....|+|.+++.+|+|.|+|.+.+.. ..++++.|+|
T Consensus 59 ~~~~~L~I~~v~~~DsG~Y~C~~~~~~-~~~~~~~~~v 95 (95)
T cd05717 59 ANELSISISNVSLSDEGRYTCSLYTMP-VQTAKATVTV 95 (95)
T ss_pred CCeeEEEEccCCcccCEEEEEEEecCC-CceEEEEEEC
Confidence 234569999999999999999999875 3466666653
No 208
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.07 E-value=1.6e-09 Score=78.66 Aligned_cols=71 Identities=27% Similarity=0.582 Sum_probs=55.3
Q ss_pred eeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCC
Q psy16852 417 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGN 496 (579)
Q Consensus 417 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~ 496 (579)
..+.+|+.++|.|.+.+.|.+.+.|++++..+....
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~-------------------------------------------- 44 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ-------------------------------------------- 44 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES--------------------------------------------
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee--------------------------------------------
Confidence 458899999999999999999999999887664211
Q ss_pred eeEEEEeecccccceeEEEEEEeCCe-eEEEEEEEEE
Q psy16852 497 RSVLLISKITRDQIGDVTCRAENVAG-SVTCTATLSL 532 (579)
Q Consensus 497 ~~~l~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~v 532 (579)
..|.+..+..+|+|.|+|.|.|..+ ..+.++.|.|
T Consensus 45 -~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 45 -NGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp -SEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred -eeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 0166678889999999999999665 4555666654
No 209
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.07 E-value=6.7e-10 Score=80.67 Aligned_cols=73 Identities=16% Similarity=0.253 Sum_probs=54.6
Q ss_pred CCceeeecCCCeEEEEE-EEeeCCCeEEEeeCCEEcCC-CCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeee
Q psy16852 414 LKPVIAEAQSPATLKAT-VTGRPTPSICWYRGKEEILP-DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKI 491 (579)
Q Consensus 414 ~~~~~~~~g~~~~l~C~-~~g~p~~~v~W~~~~~~l~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~ 491 (579)
.....+.+|+.+.|.|. ..|+|.|.|.|++++..... +.|+.+
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~----------------------------------- 54 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSM----------------------------------- 54 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEE-----------------------------------
Confidence 46678999999999997 68999999999987644222 222111
Q ss_pred eeeCCeeEEEEeecccccce-eEEEEEEeCCeeE
Q psy16852 492 MTDGNRSVLLISKITRDQIG-DVTCRAENVAGSV 524 (579)
Q Consensus 492 ~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~g~~ 524 (579)
+ ..+.|.|.+++.+|+| .|.|.|.|....+
T Consensus 55 --~-~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 55 --G-QNGNLYFANVEEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred --C-CCceEEEEEEehhhCCCCeEEEEEcccccc
Confidence 1 1245999999999999 8999999986443
No 210
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.07 E-value=3.1e-09 Score=77.24 Aligned_cols=83 Identities=19% Similarity=0.241 Sum_probs=66.5
Q ss_pred ceeeeCCCCEEEEEEEEeeCCCe-eEEEECCEEecCCCCEEEEEeC-----CEEEEEEcCCCCCCCEEEEEEEEcCCeee
Q psy16852 15 PVVSHQEQPALFTCKVEGHPLPT-MTWQKDGTELHATEHYLITTVE-----SVSTLEIINPTKEDIGVYTCKATNIGGVA 88 (579)
Q Consensus 15 ~~~v~~G~~~~l~C~~~~~~~~~-v~W~~~g~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~ 88 (579)
.+.|.+|+.+.|.|.+.++|.|. +.|.+++..+............ ..+.|+|..++.+|+|.|+|.|.|.....
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 47899999999999999999997 9999998876543331222221 24789999999999999999999988888
Q ss_pred EEEEEEEEE
Q psy16852 89 TCSANLIVL 97 (579)
Q Consensus 89 ~~~~~~~v~ 97 (579)
+.+..|.|.
T Consensus 92 s~tF~l~v~ 100 (101)
T cd05860 92 SVTFNVYVN 100 (101)
T ss_pred EEEEEEEEe
Confidence 777777663
No 211
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.06 E-value=1.7e-09 Score=79.39 Aligned_cols=83 Identities=18% Similarity=0.243 Sum_probs=56.9
Q ss_pred eeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCC
Q psy16852 417 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGN 496 (579)
Q Consensus 417 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~ 496 (579)
+.+.+|+.+.|.|.. +.|.|.+.|++.+....... . + .+.+.|. . .
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~--~----------------~--~~~~r~~-----------~--~ 51 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKE--E----------------V--KTEERLI-----------H--T 51 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccc--c----------------c--cccccEE-----------E--e
Confidence 457789999999997 48889999998432111000 0 0 0011110 0 1
Q ss_pred eeEEEEeecccccceeEEEEEE-eCCeeEEEEEEEEEe
Q psy16852 497 RSVLLISKITRDQIGDVTCRAE-NVAGSVTCTATLSLL 533 (579)
Q Consensus 497 ~~~l~i~~~~~~d~G~Y~C~a~-n~~g~~~~~~~l~v~ 533 (579)
.+.|.|.+++.+|+|.|+|.|. |..|.....++|.|.
T Consensus 52 ~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v~ 89 (91)
T cd05871 52 ERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHVI 89 (91)
T ss_pred cCeEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEEe
Confidence 1339999999999999999998 678888888888875
No 212
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.05 E-value=4.8e-10 Score=77.01 Aligned_cols=61 Identities=38% Similarity=0.559 Sum_probs=46.4
Q ss_pred CCCEEEEEEE-EeeCCCeeEEEECCEEecCCCCEEEEEeCCE--EEEEEcCCCCCCCEEEEEEE
Q psy16852 21 EQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLITTVESV--STLEIINPTKEDIGVYTCKA 81 (579)
Q Consensus 21 G~~~~l~C~~-~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~ 81 (579)
|+.++|+|.+ .+.+...+.|++++................. ..|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 8999999999 6667779999999886654433333322221 13999999999999999986
No 213
>smart00409 IG Immunoglobulin.
Probab=99.04 E-value=6.6e-09 Score=76.56 Aligned_cols=82 Identities=30% Similarity=0.561 Sum_probs=63.6
Q ss_pred ceeeecCCCeEEEEEEEeeCCCeEEEeeC-CEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852 416 PVIAEAQSPATLKATVTGRPTPSICWYRG-KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD 494 (579)
Q Consensus 416 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~-~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 494 (579)
...+..|+.+.|.|.+.+.+.+.+.|+++ +..+....++.+.. .
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~-----------------------------------~ 47 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSR-----------------------------------S 47 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEE-----------------------------------c
Confidence 34577899999999999888889999998 77765444333322 1
Q ss_pred CCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
.....|.|.++..+|+|.|+|.+.+..+.....+.|.|
T Consensus 48 ~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V 85 (86)
T smart00409 48 GSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV 85 (86)
T ss_pred CCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence 12456999999999999999999999888777777765
No 214
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.04 E-value=6.6e-09 Score=76.56 Aligned_cols=82 Identities=30% Similarity=0.561 Sum_probs=63.6
Q ss_pred ceeeecCCCeEEEEEEEeeCCCeEEEeeC-CEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852 416 PVIAEAQSPATLKATVTGRPTPSICWYRG-KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD 494 (579)
Q Consensus 416 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~-~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 494 (579)
...+..|+.+.|.|.+.+.+.+.+.|+++ +..+....++.+.. .
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~-----------------------------------~ 47 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSR-----------------------------------S 47 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEE-----------------------------------c
Confidence 34577899999999999888889999998 77765444333322 1
Q ss_pred CCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
.....|.|.++..+|+|.|+|.+.+..+.....+.|.|
T Consensus 48 ~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V 85 (86)
T smart00410 48 GSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV 85 (86)
T ss_pred CCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence 12456999999999999999999999888777777765
No 215
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.03 E-value=4.4e-10 Score=81.62 Aligned_cols=77 Identities=17% Similarity=0.318 Sum_probs=59.9
Q ss_pred Cccccc-cCceeeeCCCCEEEEEE-EEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCE-EEEEEEEc
Q psy16852 7 PRFIEK-IQPVVSHQEQPALFTCK-VEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIG-VYTCKATN 83 (579)
Q Consensus 7 p~~~~~-p~~~~v~~G~~~~l~C~-~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~ 83 (579)
|.|... +..+.|.+|+.+.|.|. ..|.|.|.|.|++++...... ..++. ...++.|.|.+++.+|+| .|.|.|.+
T Consensus 3 ~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~-~~Ri~-~~~~GnL~fs~v~~~D~g~~Y~C~a~~ 80 (95)
T cd05845 3 PKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQ-DERVS-MGQNGNLYFANVEEQDSHPDYICHAHF 80 (95)
T ss_pred CcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccc-cccEE-ECCCceEEEEEEehhhCCCCeEEEEEc
Confidence 445554 57799999999999998 588999999999877654332 22333 333489999999999999 89999987
Q ss_pred CC
Q psy16852 84 IG 85 (579)
Q Consensus 84 ~~ 85 (579)
..
T Consensus 81 ~~ 82 (95)
T cd05845 81 PG 82 (95)
T ss_pred cc
Confidence 64
No 216
>PHA03376 BARF1; Provisional
Probab=99.03 E-value=3e-09 Score=84.51 Aligned_cols=125 Identities=18% Similarity=0.189 Sum_probs=77.9
Q ss_pred CceeeeCCCCEEEEEEEEee---CCCeeEEEECCE----Ee---------cCC----CCEEEEEeCCEEEEEEcCCCCCC
Q psy16852 14 QPVVSHQEQPALFTCKVEGH---PLPTMTWQKDGT----EL---------HAT----EHYLITTVESVSTLEIINPTKED 73 (579)
Q Consensus 14 ~~~~v~~G~~~~l~C~~~~~---~~~~v~W~~~g~----~~---------~~~----~~~~~~~~~~~~~L~i~~~~~~d 73 (579)
.++.+..|+.++|+|..... +.-.|.|+|.+. .+ -.. .++.+....++.+|.|.+++.+|
T Consensus 19 ~pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSD 98 (221)
T PHA03376 19 QAVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISH 98 (221)
T ss_pred cchhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecC
Confidence 46888999999999997522 233799999432 11 011 11222223578899999999999
Q ss_pred CEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCE
Q psy16852 74 IGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE 144 (579)
Q Consensus 74 ~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~ 144 (579)
.|.|+|.+..........-.+++.. |..+...........-+...+.|...|+|.|.+.|.-+.+
T Consensus 99 dGtY~C~fQkge~~~~k~ehLt~V~------~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 99 DGNYLCRMKLGETEVTKQEHLSVVK------PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG 163 (221)
T ss_pred CceEEEEEEcCCCceeeeeeeeeee------cceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence 9999999986543333333333321 1011111100011125567999998899999999998654
No 217
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.03 E-value=1.6e-09 Score=78.93 Aligned_cols=80 Identities=15% Similarity=0.232 Sum_probs=57.1
Q ss_pred CceeeeCCCCEEEEEEE------Eee-----CCCeeEEEECCEEecCCCC-----EEEEEeCCEEEEEEcCCCCCCCEEE
Q psy16852 14 QPVVSHQEQPALFTCKV------EGH-----PLPTMTWQKDGTELHATEH-----YLITTVESVSTLEIINPTKEDIGVY 77 (579)
Q Consensus 14 ~~~~v~~G~~~~l~C~~------~~~-----~~~~v~W~~~g~~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y 77 (579)
....+.+||++.|.|.. .++ ....+.|||++..+..... .++.. ....|.|.++..+|+|.|
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~--~~~~Lwf~Pa~~eDSG~Y 85 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSK--EEDSIWFRPAELQDSGLY 85 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEE--eCCEEEEEeCChhhCeEE
Confidence 44778999999999986 111 1237999999755543321 23332 336899999999999999
Q ss_pred EEEEEcCCeeeEEEEEEE
Q psy16852 78 TCKATNIGGVATCSANLI 95 (579)
Q Consensus 78 ~C~~~~~~g~~~~~~~~~ 95 (579)
+|++.|.......++.++
T Consensus 86 ~C~~rN~t~C~~~~i~l~ 103 (104)
T cd05896 86 TCVLRNSTYCMKVSMSLT 103 (104)
T ss_pred EEEECCCCcceEEEEEEE
Confidence 999998776555555544
No 218
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.01 E-value=2e-09 Score=73.90 Aligned_cols=63 Identities=29% Similarity=0.560 Sum_probs=48.8
Q ss_pred cCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEE
Q psy16852 421 AQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL 500 (579)
Q Consensus 421 ~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l 500 (579)
+|+.++|.|.+.+.|.+.+.|++++..+.. .... ......|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~-------------------------------------~~~~~~L 41 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNRL-------------------------------------SASGSTL 41 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC--CCEE-------------------------------------ecCCcEE
Confidence 488999999998899999999998887751 1111 1123458
Q ss_pred EEeecccccceeEEEEEEeCCe
Q psy16852 501 LISKITRDQIGDVTCRAENVAG 522 (579)
Q Consensus 501 ~i~~~~~~d~G~Y~C~a~n~~g 522 (579)
.|.+++.+|+|.|+|.|.|..|
T Consensus 42 ~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 42 TIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred EEeeCCcccCEEEEEEEecCCC
Confidence 8899999999999999998765
No 219
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.98 E-value=2e-09 Score=78.61 Aligned_cols=74 Identities=16% Similarity=0.266 Sum_probs=53.5
Q ss_pred eeeecCCCeEEEEE-EEe----eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeee
Q psy16852 417 VIAEAQSPATLKAT-VTG----RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKI 491 (579)
Q Consensus 417 ~~~~~g~~~~l~C~-~~g----~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~ 491 (579)
+.+..|....|.|. ..+ .+.|+++|+|++.++....+....+
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~--------------------------------- 51 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSL--------------------------------- 51 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEec---------------------------------
Confidence 45667899999997 233 3667999999999886544322111
Q ss_pred eeeCCeeEEEEeecccccceeEEEEEEeCCeeEEE
Q psy16852 492 MTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC 526 (579)
Q Consensus 492 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~ 526 (579)
...+.|.|.++..+|+|.|+|.|.|.+|....
T Consensus 52 ---~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y 83 (95)
T cd05897 52 ---KGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKY 83 (95)
T ss_pred ---CCCCEEEEEEcChhhCEEEEEEEEEeeCCEEE
Confidence 01223999999999999999999999876543
No 220
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.98 E-value=1.7e-09 Score=79.85 Aligned_cols=74 Identities=14% Similarity=0.217 Sum_probs=57.2
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI 84 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 84 (579)
+|.|...|.. .|.+|++|+|+|... .+...+.|+++|....... .........|.|.+++.+|+|.|+|++.+.
T Consensus 2 kP~L~a~p~~-vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~---~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 2 KPSLWAEPSS-VVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK---PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCEEEecCCC-ccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc---cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 5777777764 689999999999885 4566899999998644221 112234578999999999999999999875
No 221
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.97 E-value=7.9e-09 Score=72.37 Aligned_cols=68 Identities=16% Similarity=0.275 Sum_probs=50.8
Q ss_pred CeEEEEEEE-eeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEE
Q psy16852 424 PATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLI 502 (579)
Q Consensus 424 ~~~l~C~~~-g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i 502 (579)
.++|+|... |.|++++.||+++.+|..... ...+.+.|+ ..++|.|
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~-------------------~~~~~~~~t--------------~~s~L~~ 47 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVIS-------------------QQENGKTVS--------------VSNTIRF 47 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCcc-------------------cccCCceEE--------------EEEEEEE
Confidence 368999985 689999999999999954211 112222332 3456999
Q ss_pred eecccccceeEEEEEEeCCeeE
Q psy16852 503 SKITRDQIGDVTCRAENVAGSV 524 (579)
Q Consensus 503 ~~~~~~d~G~Y~C~a~n~~g~~ 524 (579)
.....+|.+.|+|+|.|..+..
T Consensus 48 ~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 48 PVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EeeeccCCcEEEEEEEChhhCC
Confidence 9999999999999999998853
No 222
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.97 E-value=2.1e-09 Score=78.48 Aligned_cols=72 Identities=21% Similarity=0.355 Sum_probs=53.8
Q ss_pred ceeeeCCCCEEEEEEE-E----eeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCee
Q psy16852 15 PVVSHQEQPALFTCKV-E----GHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGV 87 (579)
Q Consensus 15 ~~~v~~G~~~~l~C~~-~----~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~ 87 (579)
+..+.+|.+..|+|.- . ..+.+.++||||+.++........ ...+...|.|.++..+|+|.|+|.+.+..|.
T Consensus 4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~-~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g 80 (95)
T cd05897 4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFY-SLKGSTYLHIIDVSLNDSGYYTCKLQFTHEG 80 (95)
T ss_pred eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceE-ecCCCCEEEEEEcChhhCEEEEEEEEEeeCC
Confidence 3567899999999973 2 235668999999999875443222 2122357999999999999999999987643
No 223
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.95 E-value=5.4e-09 Score=74.39 Aligned_cols=65 Identities=23% Similarity=0.457 Sum_probs=53.0
Q ss_pred cCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 13 IQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 13 p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
...+.|.+|+++.|.|...+. .+.+.|+++|..+..+.++.... ..|.|.+++.+|+|.|.|.+.
T Consensus 3 ~~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~----~GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 3 VKNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGT----DGLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred ceEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeC----CCCEEEECCHhhCEEEEEEEe
Confidence 356789999999999999765 55999999999987655443332 348899999999999999986
No 224
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.91 E-value=9.5e-09 Score=79.45 Aligned_cols=76 Identities=16% Similarity=0.291 Sum_probs=57.3
Q ss_pred ccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEE------e--------cCCCCEEEEEe--CCEEEEEEcCCCCCC
Q psy16852 10 IEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTE------L--------HATEHYLITTV--ESVSTLEIINPTKED 73 (579)
Q Consensus 10 ~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~------~--------~~~~~~~~~~~--~~~~~L~i~~~~~~d 73 (579)
...|..+.+.+|++|+|.|.+.+.+...+.|||.... + ....++.+... .....|+|.+++.+|
T Consensus 2 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D 81 (109)
T cd04983 2 TQSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSD 81 (109)
T ss_pred eecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHH
Confidence 3567889999999999999998766778999985321 0 12234444332 357899999999999
Q ss_pred CEEEEEEEEcCC
Q psy16852 74 IGVYTCKATNIG 85 (579)
Q Consensus 74 ~G~Y~C~~~~~~ 85 (579)
+|.|+|.+.+..
T Consensus 82 sG~Y~C~~~~~~ 93 (109)
T cd04983 82 SAVYFCALSESG 93 (109)
T ss_pred CEEEEEEEecCC
Confidence 999999998653
No 225
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.89 E-value=6.5e-09 Score=72.79 Aligned_cols=66 Identities=24% Similarity=0.365 Sum_probs=48.8
Q ss_pred CEEEEEEEE-eeCCCeeEEEECCEEecCCCCEE--EEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeee
Q psy16852 23 PALFTCKVE-GHPLPTMTWQKDGTELHATEHYL--ITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA 88 (579)
Q Consensus 23 ~~~l~C~~~-~~~~~~v~W~~~g~~~~~~~~~~--~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~ 88 (579)
.++|+|... +.|++.|+||++|+++....... -......++|+|.....+|++.|+|+|.|..+..
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 378999985 57888999999999996532100 0000123679999999999999999999987643
No 226
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.88 E-value=8.6e-09 Score=79.53 Aligned_cols=74 Identities=18% Similarity=0.327 Sum_probs=55.3
Q ss_pred ccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCE--E---e----------c---CCCCEEEEEeC-CEEEEEEcCCC
Q psy16852 10 IEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGT--E---L----------H---ATEHYLITTVE-SVSTLEIINPT 70 (579)
Q Consensus 10 ~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~--~---~----------~---~~~~~~~~~~~-~~~~L~i~~~~ 70 (579)
...|..+.+.+|++++|.|.+.+ +...+.|||... . | . ...++...... ...+|.|.+++
T Consensus 2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~ 80 (110)
T cd05899 2 TQSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAE 80 (110)
T ss_pred EECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCC
Confidence 45688899999999999999987 667899999532 1 0 0 12334333322 46789999999
Q ss_pred CCCCEEEEEEEEcC
Q psy16852 71 KEDIGVYTCKATNI 84 (579)
Q Consensus 71 ~~d~G~Y~C~~~~~ 84 (579)
.+|+|.|+|.+.+.
T Consensus 81 ~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 81 PEDSAVYLCASSLG 94 (110)
T ss_pred hhhCEEEEEEeeCC
Confidence 99999999999764
No 227
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.87 E-value=1.6e-08 Score=71.93 Aligned_cols=77 Identities=18% Similarity=0.276 Sum_probs=56.6
Q ss_pred CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852 415 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD 494 (579)
Q Consensus 415 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 494 (579)
.+.++..|+.+.|.|...+ +.+.+.|+++|..+..+.++.... +
T Consensus 4 ~~~tv~~g~~v~L~C~~~s-~~A~v~W~~ng~~l~~~~r~~~~~-----------------------------------~ 47 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRS-NLASPVWLFNGTPLNAQFSYRVGT-----------------------------------D 47 (85)
T ss_pred eEEEEecCCCEEEECCCCC-CCccEEEEECCcccCCCcceEEeC-----------------------------------C
Confidence 4567889999999999984 466999999999987654443311 1
Q ss_pred CCeeEEEEeecccccceeEEEEEEeCCe--eEEEEEEEEE
Q psy16852 495 GNRSVLLISKITRDQIGDVTCRAENVAG--SVTCTATLSL 532 (579)
Q Consensus 495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~l~v 532 (579)
| |.|..++.+|+|.|.|.+. +.| ..-....|.|
T Consensus 48 G----LlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~y~l~v 82 (85)
T cd05872 48 G----LLILVTSPEHSGTYRCYSE-EEGFQQLVASYSLNV 82 (85)
T ss_pred C----CEEEECCHhhCEEEEEEEe-cCCCeEEEEEEEEEE
Confidence 1 8899999999999999986 334 3444445554
No 228
>PHA03376 BARF1; Provisional
Probab=98.85 E-value=3.9e-08 Score=78.33 Aligned_cols=125 Identities=14% Similarity=0.172 Sum_probs=78.0
Q ss_pred ceEEccCCcEEEEEEEE---eecCCeEEEEECCE----Ec-cC----------CCCceEEEcCCCCeEEEEECcCCCCCC
Q psy16852 114 PVIAEAQSPATLKATVT---GRPTPSICWYRGKE----EI-LP----------DNGHTMEFNPTTGECVLSISEATPQDE 175 (579)
Q Consensus 114 ~~~~~~g~~~~l~C~~~---~~p~~~i~W~~~~~----~~-~~----------~~~~~~~~~~~~~~~~l~i~~~~~~d~ 175 (579)
++....|+.+.|+|... ..+...|.|+|.+. -+ .. ..+....+-...++.+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 56677899999999864 22446999999421 11 10 112222222234778999999999999
Q ss_pred eEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECC
Q psy16852 176 AVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNG 249 (579)
Q Consensus 176 G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~ 249 (579)
|.|+|.+............+++. .|-.+...........-+..++.|.+.|+|.|.++|..+.
T Consensus 100 GtY~C~fQkge~~~~k~ehLt~V-----------~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~ 162 (221)
T PHA03376 100 GNYLCRMKLGETEVTKQEHLSVV-----------KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPE 162 (221)
T ss_pred ceEEEEEEcCCCceeeeeeeeee-----------ecceEEEEeccccCCCCCeeEEEEecCCcCCchheecccc
Confidence 99999998765544443333332 1111111111111222466799999878999999998754
No 229
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.85 E-value=2.1e-08 Score=72.65 Aligned_cols=66 Identities=27% Similarity=0.454 Sum_probs=47.5
Q ss_pred CEEEEEEEEe-eCCCeeEEEECCEEecCCCCEEEEEeC-----CEEEEEEcCCCCCCCEEEEEEEEcCCeee
Q psy16852 23 PALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVE-----SVSTLEIINPTKEDIGVYTCKATNIGGVA 88 (579)
Q Consensus 23 ~~~l~C~~~~-~~~~~v~W~~~g~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~ 88 (579)
++.|+|.+.| .|.+.++|+++|+.+............ ..+.|.|.....+|.|.|+|.|.|.....
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~ 72 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPT 72 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCC
Confidence 4789999987 577899999999988643221111111 13578888888889999999999876433
No 230
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.85 E-value=1.5e-08 Score=77.55 Aligned_cols=75 Identities=17% Similarity=0.257 Sum_probs=55.3
Q ss_pred cccccCceeeeCCCCEEEEEEEEeeC-CCeeEEEECC--E---Eec---------CCCCEEEEEeCCEEEEEEcCCCCCC
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEGHP-LPTMTWQKDG--T---ELH---------ATEHYLITTVESVSTLEIINPTKED 73 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~~~-~~~v~W~~~g--~---~~~---------~~~~~~~~~~~~~~~L~i~~~~~~d 73 (579)
+...|..+.+.+|++|+|+|.+.+.. ...+.|||.. . .+. ...++..........|+|.+++.+|
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D 82 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPED 82 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHH
Confidence 45668889999999999999986554 4579999842 1 111 1134444444456789999999999
Q ss_pred CEEEEEEEEc
Q psy16852 74 IGVYTCKATN 83 (579)
Q Consensus 74 ~G~Y~C~~~~ 83 (579)
+|.|.|.+.+
T Consensus 83 sg~Y~Ca~~~ 92 (106)
T cd04980 83 AAVYYCQQYG 92 (106)
T ss_pred CEEEEEEEeC
Confidence 9999999864
No 231
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.84 E-value=4.4e-09 Score=75.14 Aligned_cols=74 Identities=35% Similarity=0.554 Sum_probs=53.6
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeC-CCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHP-LPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
||.+...+.......+. ++|+|.+.+.+ .+.++|+ +..... .............|.|.++..+|.|.|+|.|.|
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~--~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSF--NSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEE--EEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCce--eeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 57888888887676666 99999998877 7799999 111111 111112223457899999999999999999976
No 232
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.83 E-value=4.3e-08 Score=70.97 Aligned_cols=78 Identities=24% Similarity=0.318 Sum_probs=51.6
Q ss_pred CeEEEEEEEe-eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEE
Q psy16852 424 PATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLI 502 (579)
Q Consensus 424 ~~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i 502 (579)
.++|+|.+.| .|.+.+.|+++|..+.......... .+++.| ...+.|.+
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~----------------~~~~~~--------------~~~s~L~i 50 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELL----------------KDGKRE--------------TTVSTLPI 50 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEe----------------cCCCeE--------------EEEEEEEE
Confidence 3689999987 6888999999999885321111000 011111 12355888
Q ss_pred eecccccceeEEEEEEeCCeeEEEEEEEE
Q psy16852 503 SKITRDQIGDVTCRAENVAGSVTCTATLS 531 (579)
Q Consensus 503 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 531 (579)
.....+|.|.|+|.|.|..........++
T Consensus 51 ~~~~~~~~~~y~C~a~n~~l~~~~~~s~~ 79 (82)
T cd05759 51 TPSDHDTGRTFTCRARNEALPTGKETSVT 79 (82)
T ss_pred eCceecCCCEEEEEEcCccCCCCcEEEEE
Confidence 88888999999999999876544444443
No 233
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.81 E-value=2.2e-08 Score=75.11 Aligned_cols=84 Identities=20% Similarity=0.195 Sum_probs=55.1
Q ss_pred ccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCE-----Ee---cCC---------CCEEEEEeCCEEEEEEcCCCCC
Q psy16852 10 IEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGT-----EL---HAT---------EHYLITTVESVSTLEIINPTKE 72 (579)
Q Consensus 10 ~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~-----~~---~~~---------~~~~~~~~~~~~~L~i~~~~~~ 72 (579)
+.+|-+..+.+|+++.|.|.........+.|||... .+ ... ...+. ....+++|.|.+++.+
T Consensus 2 tie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~-~~~~ngSL~I~~v~~~ 80 (105)
T cd05774 2 TIELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRE-TIYPNGSLLIQNVTQK 80 (105)
T ss_pred eEeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcE-EEeCCCcEEEecCCcc
Confidence 345667779999999999976444444899999521 11 010 01111 1123468999999999
Q ss_pred CCEEEEEEEEcCCe-eeEEEEEE
Q psy16852 73 DIGVYTCKATNIGG-VATCSANL 94 (579)
Q Consensus 73 d~G~Y~C~~~~~~g-~~~~~~~~ 94 (579)
|+|.|+|.+.+... .....+.+
T Consensus 81 D~G~Y~~~v~~~~~~~~~~~v~l 103 (105)
T cd05774 81 DTGFYTLQTITTNFQVEQATVHL 103 (105)
T ss_pred cCEEEEEEEEeCCccEEEEEEEE
Confidence 99999999988763 33333333
No 234
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.81 E-value=1.4e-08 Score=75.20 Aligned_cols=76 Identities=13% Similarity=0.164 Sum_probs=52.9
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
+|.|...|. ..|.+|++|+|.|.... ....+.|||+|...................|.|.+++.+|+|.|+|....
T Consensus 1 kP~l~a~p~-~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 1 KPFLSAHPS-PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CCEEEecCC-CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 466666554 45889999999998864 44579999988753211000000122346899999999999999999753
No 235
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.80 E-value=3.7e-08 Score=76.97 Aligned_cols=74 Identities=24% Similarity=0.407 Sum_probs=56.3
Q ss_pred ccccCceeeeCCCCEEEEEEEEe--eCCCeeEEEEC--CEE---e---c-----------CCCCEEEEEeC--CEEEEEE
Q psy16852 10 IEKIQPVVSHQEQPALFTCKVEG--HPLPTMTWQKD--GTE---L---H-----------ATEHYLITTVE--SVSTLEI 66 (579)
Q Consensus 10 ~~~p~~~~v~~G~~~~l~C~~~~--~~~~~v~W~~~--g~~---~---~-----------~~~~~~~~~~~--~~~~L~i 66 (579)
...|..+.+.+|++++|.|.+.+ .+...+.|||. |.. + . ...++...... ....|+|
T Consensus 2 ~Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I 81 (116)
T cd04982 2 EQPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTI 81 (116)
T ss_pred CCcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEE
Confidence 35678899999999999999976 56678999994 211 0 0 12455555454 5789999
Q ss_pred cCCCCCCCEEEEEEEEc
Q psy16852 67 INPTKEDIGVYTCKATN 83 (579)
Q Consensus 67 ~~~~~~d~G~Y~C~~~~ 83 (579)
.+++.+|+|.|.|.+..
T Consensus 82 ~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 82 QNLEKEDSATYYCAYWE 98 (116)
T ss_pred EECCHHHCEEEEEEEec
Confidence 99999999999999864
No 236
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=98.80 E-value=0.00053 Score=78.06 Aligned_cols=388 Identities=14% Similarity=0.097 Sum_probs=206.9
Q ss_pred CCCCEEEEEE--EEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEcc-
Q psy16852 71 KEDIGVYTCK--ATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEIL- 147 (579)
Q Consensus 71 ~~d~G~Y~C~--~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~- 147 (579)
-.+.|.|.-. +.|..|....+.++.|.++ ...+........+..|+.+.|.-...+.....+.|...++.-.
T Consensus 1666 ~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~ep-----i~~L~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~ 1740 (2740)
T TIGR00864 1666 PLEAGPCDIFLQAANLLGQATADCTIDFLEP-----AGNLMLQASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLE 1740 (2740)
T ss_pred cCCCceEEEEEEEeecccceeeEEEEEEEEE-----cCceEEeccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcc
Confidence 3678988775 4588888888778888763 1223333344455679999999877777788999998764211
Q ss_pred -CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEE--EEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCC--cee
Q psy16852 148 -PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK--AVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ--ALL 222 (579)
Q Consensus 148 -~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~--~~~ 222 (579)
....... .....|.|... |.|..+....+..+.|.... ....+..... ...
T Consensus 1741 ~s~p~~tH----------------tf~~~G~y~VtVta~N~vss~~~s~~V~VqepV--------~GL~i~~~~~~~~~~ 1796 (2740)
T TIGR00864 1741 TSEPFMSH----------------SFPSAGLHLVTMKAFNELGSANASEEVDVQEPI--------SGLKIRAADAGEQNF 1796 (2740)
T ss_pred cCCCceEE----------------EccCCceEEEEEEEEccccccceeEEEEEEecc--------ccceEecCCCCcccc
Confidence 1111111 12356777654 57887777666555554322 1112221111 113
Q ss_pred eCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEE--EEcCCeeeEEEEEEEEEe
Q psy16852 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIR--VVNEAGEARTSGSVTITV 300 (579)
Q Consensus 223 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~--a~n~~g~~~~~~~~~v~~ 300 (579)
+..|..+.+.-.+.......+.|..++..-.. .. .. ..+..++|.|+-. |.|..+....+..+.|..
T Consensus 1797 ~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~------gk--~v---~~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe 1865 (2740)
T TIGR00864 1797 FAADSSVCFQGELATGTNVSWCWAIDGGSSKM------GK--HA---CMTFPDAGTFAIRLNASNAVSGKSASREFFAEE 1865 (2740)
T ss_pred eecCcEEEEEEEccCCCeeEEEEEeCCCCccc------cc--ee---EEecCCCeEEEEEEEEEcccCcceeeeeEEEEE
Confidence 45677777766654334447778776532111 11 11 1345688998765 468887777776666652
Q ss_pred ccceeeeeeeeeec-cccCceeeeecCeeEEEeeeCCCeEEEEECCE-Ecc--CCCeEEEEECCCCeEEEEEcccCCCCC
Q psy16852 301 AEAETVMMDVRVES-HPTASFQWFIHSEPVVVTGKPTPLVTWSHDGT-PMK--EGKEVTIYQDTDGLCKLAISEVFPENA 376 (579)
Q Consensus 301 ~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~-~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~ 376 (579)
... .+.|.+.... .....+ ...+.....+...+.|..++. +.. .+..+. +....-..
T Consensus 1866 ~I~-~L~L~as~~~~~~n~~v-----~fsa~l~~GS~Vtf~w~fGdgs~~~~t~~~t~~-------------HsY~~~G~ 1926 (2740)
T TIGR00864 1866 PIF-GLELKASKKIAAIGEKV-----EFQILLAAGSAVNFRLQIGGAAPEVLQPGPRFS-------------HSFPRVDD 1926 (2740)
T ss_pred ecc-eEEEecccccccCCCEE-----EEEEEecCCCceEEEEEeCCCCceeecCCCeEE-------------eecCCCCc
Confidence 221 1222222110 011111 111223333456677766532 211 111111 11222333
Q ss_pred EEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCce-eeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCee
Q psy16852 377 GLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPV-IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHT 455 (579)
Q Consensus 377 G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~-~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~ 455 (579)
...+..|.|..+.......+.|... ...+....... .+..|+..++.-.+...-+..+.|+++-..+..+....
T Consensus 1927 Y~VtV~A~N~Vs~~~a~~~V~Vle~-----V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~~~ 2001 (2740)
T TIGR00864 1927 HMVNLRAKNEVSCAQANLHIEVLEA-----VRGLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSLVI 2001 (2740)
T ss_pred EEEEEEEEeccceeeeeEEEEEEEe-----ccceEecCCcccceecCceEEEEEEEecCCceEEEEEeeecccCCCccee
Confidence 4445567888888877777777653 12222222111 25778999999988755555899998644443332211
Q ss_pred EEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEE--EEEeCCeeEEEEEEEEEe
Q psy16852 456 MEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTC--RAENVAGSVTCTATLSLL 533 (579)
Q Consensus 456 ~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C--~a~n~~g~~~~~~~l~v~ 533 (579)
. .+.. -+.+ ....|.|.- .|.|.+|....+..++|+
T Consensus 2002 ~----~G~~---------------------------------vty~-----~~~~G~~~I~v~A~N~l~s~n~t~~i~VQ 2039 (2740)
T TIGR00864 2002 H----MGKD---------------------------------VSYT-----AEAAGLLEIQLGAFNALGAENITLQLEAQ 2039 (2740)
T ss_pred e----cCCc---------------------------------eEEc-----cCCCcEEEEEEEEEcccCcccccEEEEEE
Confidence 1 0000 0011 123566654 688999988888888877
Q ss_pred eCCcccccccCCccccCCCceEEecCCcEEEEEEeccce
Q psy16852 534 PESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSE 572 (579)
Q Consensus 534 ~~~~~~~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~ 572 (579)
.+.... .....+.....|..+.|.|.+...+
T Consensus 2040 ~~i~~~--------~L~~~p~~~~~n~~v~f~~~~~~~~ 2070 (2740)
T TIGR00864 2040 DALMDA--------ALQAGPQDCFTNKMAQFEAATSPKP 2070 (2740)
T ss_pred eheeeE--------EEeecCcceecCceEEEEEEEccCC
Confidence 432211 1111223345688899999885533
No 237
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.80 E-value=8.2e-08 Score=73.54 Aligned_cols=79 Identities=18% Similarity=0.231 Sum_probs=56.0
Q ss_pred CCCCEEEEEEEEeeC------CCeeEEEECC-----E-Ee--cCC--------CCEEEEE---eCCEEEEEEcCCCCCCC
Q psy16852 20 QEQPALFTCKVEGHP------LPTMTWQKDG-----T-EL--HAT--------EHYLITT---VESVSTLEIINPTKEDI 74 (579)
Q Consensus 20 ~G~~~~l~C~~~~~~------~~~v~W~~~g-----~-~~--~~~--------~~~~~~~---~~~~~~L~i~~~~~~d~ 74 (579)
.|++|+|.|.+...+ ...|.|++.. . .+ ..+ .+.++.. ..+..+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999987643 3589999962 1 11 011 1112222 23568999999999999
Q ss_pred EEEEEEEEcCCeeeEEEEEEEEEe
Q psy16852 75 GVYTCKATNIGGVATCSANLIVLE 98 (579)
Q Consensus 75 G~Y~C~~~~~~g~~~~~~~~~v~~ 98 (579)
|.|+|.+.+..+.....+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999998777777777777753
No 238
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.79 E-value=6.5e-08 Score=73.54 Aligned_cols=78 Identities=21% Similarity=0.255 Sum_probs=52.9
Q ss_pred CCCCEEEEEEEEeeC------------CCeeEEEEC--CEE---e---------cCCCCEEEEE-----eCCEEEEEEcC
Q psy16852 20 QEQPALFTCKVEGHP------------LPTMTWQKD--GTE---L---------HATEHYLITT-----VESVSTLEIIN 68 (579)
Q Consensus 20 ~G~~~~l~C~~~~~~------------~~~v~W~~~--g~~---~---------~~~~~~~~~~-----~~~~~~L~i~~ 68 (579)
.|++|+|.|...... .+.|.|+|- |.. + ....+.++.. ..+..+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999986432 358999983 211 1 1111113333 23578999999
Q ss_pred CCCCCCEEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 69 PTKEDIGVYTCKATNIGGVATCSANLIVL 97 (579)
Q Consensus 69 ~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~ 97 (579)
++.+|+|.|+|.+.+........+.|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 99999999999998765555555666654
No 239
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.79 E-value=1e-08 Score=70.36 Aligned_cols=63 Identities=24% Similarity=0.462 Sum_probs=45.3
Q ss_pred CCcEEEEEEE-EeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEE
Q psy16852 120 QSPATLKATV-TGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182 (579)
Q Consensus 120 g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~ 182 (579)
|+.++|.|.+ .+.+...+.|++++.....................|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 66677899999998755433222222221111124999999999999999986
No 240
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.77 E-value=5.3e-08 Score=71.12 Aligned_cols=85 Identities=14% Similarity=0.214 Sum_probs=57.5
Q ss_pred ceeeecCCCeEEEEEEE------e-----eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852 416 PVIAEAQSPATLKATVT------G-----RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 484 (579)
Q Consensus 416 ~~~~~~g~~~~l~C~~~------g-----~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~ 484 (579)
...+.+|+++.|.|..- + .....+.|+|++..+........ .+.
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~-----~~~-------------------- 63 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIF-----DGV-------------------- 63 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccc-----cce--------------------
Confidence 35688999999999861 1 12337999999755543321000 000
Q ss_pred ecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 485 SSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 485 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
+.......|.|.++..+|+|.|+|++.|.......++.|+|
T Consensus 64 -------Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 64 -------RMSKEEDSIWFRPAELQDSGLYTCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred -------eEEEeCCEEEEEeCChhhCeEEEEEECCCCcceEEEEEEEC
Confidence 00112334999999999999999999999888888877764
No 241
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.76 E-value=2.3e-07 Score=67.91 Aligned_cols=72 Identities=18% Similarity=0.196 Sum_probs=54.4
Q ss_pred CceEEccCCcEEEEEEEEeecCCeEEEEECCEEc--------cCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852 113 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEI--------LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184 (579)
Q Consensus 113 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 184 (579)
.++.+.+|++++|+|.+.+.....+.|++.+..+ ..+.++... ...+...+|.|.+++.+|+|.|.|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~-~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLV-NFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEE-eCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 5678889999999999987766778888766432 233344433 2235577899999999999999999975
Q ss_pred C
Q psy16852 185 T 185 (579)
Q Consensus 185 ~ 185 (579)
.
T Consensus 84 ~ 84 (95)
T cd05881 84 D 84 (95)
T ss_pred c
Confidence 3
No 242
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.75 E-value=9.4e-08 Score=73.31 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=53.1
Q ss_pred ccCceeeeCCCCEEEEEEEEeeC----CCeeEE---------------EECCEEecC-CCC--EEEEEe----CCEEEEE
Q psy16852 12 KIQPVVSHQEQPALFTCKVEGHP----LPTMTW---------------QKDGTELHA-TEH--YLITTV----ESVSTLE 65 (579)
Q Consensus 12 ~p~~~~v~~G~~~~l~C~~~~~~----~~~v~W---------------~~~g~~~~~-~~~--~~~~~~----~~~~~L~ 65 (579)
.+..+.+..|+.++|.|...... ...+.| |++|..... ... -++... .+..+|.
T Consensus 4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~ 83 (116)
T cd05879 4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV 83 (116)
T ss_pred ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence 46678899999999999996532 248999 334444321 111 122222 3568999
Q ss_pred EcCCCCCCCEEEEEEEEcCCe
Q psy16852 66 IINPTKEDIGVYTCKATNIGG 86 (579)
Q Consensus 66 i~~~~~~d~G~Y~C~~~~~~g 86 (579)
|.+++.+|.|.|+|.+.|..+
T Consensus 84 I~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 84 IHNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred EccCCcccCEEEEEEEEcCCC
Confidence 999999999999999998654
No 243
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.74 E-value=1.7e-07 Score=71.85 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=35.9
Q ss_pred eCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 494 DGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
......|+|.+++.+|+|.|.|.+.+..+.....++|+|.
T Consensus 64 ~~~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 64 DPGDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred CCCcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEE
Confidence 4466789999999999999999999998888899999886
No 244
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.74 E-value=9.4e-08 Score=72.17 Aligned_cols=75 Identities=20% Similarity=0.282 Sum_probs=52.7
Q ss_pred CCEEEEEEEEeeC---CCeeEEEECCEE---------------ecCCCCEEEEEeC---CEEEEEEcCCCCCCCEEEEEE
Q psy16852 22 QPALFTCKVEGHP---LPTMTWQKDGTE---------------LHATEHYLITTVE---SVSTLEIINPTKEDIGVYTCK 80 (579)
Q Consensus 22 ~~~~l~C~~~~~~---~~~v~W~~~g~~---------------~~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~ 80 (579)
++|+|.|.+...+ ...|.|+|.... +......++.... ...+|+|.+++.+|+|.|+|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 5799999997644 337999995421 1111123333332 467999999999999999999
Q ss_pred EEc-CCeeeEEEEEEEE
Q psy16852 81 ATN-IGGVATCSANLIV 96 (579)
Q Consensus 81 ~~~-~~g~~~~~~~~~v 96 (579)
+.. ..|.....+.|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 874 5677777777776
No 245
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.73 E-value=1.3e-07 Score=73.08 Aligned_cols=90 Identities=13% Similarity=0.185 Sum_probs=55.4
Q ss_pred CCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852 414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT 493 (579)
Q Consensus 414 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 493 (579)
+....+.+|++++|.|.+.+.+...+.|++.... ......+... . .......+++.... ..
T Consensus 5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~--~~~~~l~~~~-~---------~~~~~~~~r~~~~~-------~~ 65 (109)
T cd04983 5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPG--QGPQFLIYIS-S---------NGEEKEKGRFSATL-------DK 65 (109)
T ss_pred CCceEEcCCCCEEEEEEECCCCccEEEEEEECCC--CCeEEEEEEe-c---------CCCcccCCcEEEEE-------cc
Confidence 4556789999999999998777789999995321 0111111110 0 00011222332111 11
Q ss_pred eCCeeEEEEeecccccceeEEEEEEeCCe
Q psy16852 494 DGNRSVLLISKITRDQIGDVTCRAENVAG 522 (579)
Q Consensus 494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 522 (579)
+.....|.|.+++.+|+|.|.|.+.+..+
T Consensus 66 ~~~~~~L~I~~~~~~DsG~Y~C~~~~~~~ 94 (109)
T cd04983 66 SRKSSSLHISAAQLSDSAVYFCALSESGG 94 (109)
T ss_pred cCCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence 23567799999999999999999987643
No 246
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.73 E-value=1.8e-07 Score=71.74 Aligned_cols=78 Identities=17% Similarity=0.212 Sum_probs=54.6
Q ss_pred CCCCEEEEEEEEeeC------CCeeEEEECCE----E----ecCC------C--CEEEEEe---CCEEEEEEcCCCCCCC
Q psy16852 20 QEQPALFTCKVEGHP------LPTMTWQKDGT----E----LHAT------E--HYLITTV---ESVSTLEIINPTKEDI 74 (579)
Q Consensus 20 ~G~~~~l~C~~~~~~------~~~v~W~~~g~----~----~~~~------~--~~~~~~~---~~~~~L~i~~~~~~d~ 74 (579)
.|++|+|.|.+...| ...|.|||... . +... . ..+.... .+..+|+|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 589999999987553 24699999531 1 1100 0 1122221 2357899999999999
Q ss_pred EEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 75 GVYTCKATNIGGVATCSANLIVL 97 (579)
Q Consensus 75 G~Y~C~~~~~~g~~~~~~~~~v~ 97 (579)
|.|+|.+.+..+.....+.|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEE
Confidence 99999999888877777777775
No 247
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.72 E-value=3.5e-08 Score=70.40 Aligned_cols=73 Identities=34% Similarity=0.602 Sum_probs=48.0
Q ss_pred CeeecCCCceeeecCCCeEEEEEEEeeC-CCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852 408 PKFTKPLKPVIAEAQSPATLKATVTGRP-TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS 486 (579)
Q Consensus 408 p~~~~~~~~~~~~~g~~~~l~C~~~g~p-~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 486 (579)
|.+...+.......+. ++|.|.+.+.| .+.++|+ +......
T Consensus 2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~------------------------------------ 43 (75)
T PF13927_consen 2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFN------------------------------------ 43 (75)
T ss_dssp SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEE------------------------------------
T ss_pred CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCcee------------------------------------
Confidence 4555444444444344 99999999887 7799999 1111000
Q ss_pred ceeeeeeeCCeeEEEEeecccccceeEEEEEEe
Q psy16852 487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAEN 519 (579)
Q Consensus 487 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 519 (579)
..........+.|.|.++..+|.|.|+|.|+|
T Consensus 44 -~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 44 -SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp -EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred -eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 00122244566799999999999999999987
No 248
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.72 E-value=1.1e-07 Score=73.53 Aligned_cols=75 Identities=19% Similarity=0.347 Sum_probs=51.5
Q ss_pred ccCceeeeCCCCEEEEEEEEeeC----CCeeEEEEC----CEE--e---c------CCCCE--EEEE----eCCEEEEEE
Q psy16852 12 KIQPVVSHQEQPALFTCKVEGHP----LPTMTWQKD----GTE--L---H------ATEHY--LITT----VESVSTLEI 66 (579)
Q Consensus 12 ~p~~~~v~~G~~~~l~C~~~~~~----~~~v~W~~~----g~~--~---~------~~~~~--~~~~----~~~~~~L~i 66 (579)
.|+.+.+.+|++++|.|.....+ ...+.||+. +.. + . ...++ ++.. .....+|+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I 83 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI 83 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence 47789999999999999986433 236999852 211 1 0 11122 2221 124678999
Q ss_pred cCCCCCCCEEEEEEEEcCCe
Q psy16852 67 INPTKEDIGVYTCKATNIGG 86 (579)
Q Consensus 67 ~~~~~~d~G~Y~C~~~~~~g 86 (579)
.+++.+|+|.|+|.+.+..+
T Consensus 84 ~~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 84 WQLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred eeCChhhCEEEEEEEEeCCC
Confidence 99999999999999987544
No 249
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.72 E-value=5.7e-08 Score=71.68 Aligned_cols=73 Identities=19% Similarity=0.305 Sum_probs=53.7
Q ss_pred CeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcC
Q psy16852 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNE 286 (579)
Q Consensus 212 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~ 286 (579)
|.+...+. ..+..|++++|.|... .+...+.|+++|................|.|.+++.+|+|.|+|++.+.
T Consensus 3 P~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 3 PSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 34444333 3578999999999875 5667899999987544222122344567999999999999999999876
No 250
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.70 E-value=6.7e-08 Score=72.19 Aligned_cols=78 Identities=17% Similarity=0.212 Sum_probs=53.5
Q ss_pred eCCCCEEEEEEEEe-eCCCeeEEEECCEEecC-------------CCC--EEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 19 HQEQPALFTCKVEG-HPLPTMTWQKDGTELHA-------------TEH--YLITTVESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 19 ~~G~~~~l~C~~~~-~~~~~v~W~~~g~~~~~-------------~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
..|++|+|+|.... .....+.|++....+.. .+. .+........+|+|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 47999999998754 33447999986432210 111 234444556899999999999999999998
Q ss_pred cCCeee-EEEEEEEE
Q psy16852 83 NIGGVA-TCSANLIV 96 (579)
Q Consensus 83 ~~~g~~-~~~~~~~v 96 (579)
...|.. .....|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 776533 34455554
No 251
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.70 E-value=9.1e-08 Score=73.45 Aligned_cols=71 Identities=23% Similarity=0.335 Sum_probs=52.1
Q ss_pred eeeeCCCCEEEEEEEEee-CCCeeEEEECCE-----Ee------------cCCCCEEEEEeC--CEEEEEEcCCCCCCCE
Q psy16852 16 VVSHQEQPALFTCKVEGH-PLPTMTWQKDGT-----EL------------HATEHYLITTVE--SVSTLEIINPTKEDIG 75 (579)
Q Consensus 16 ~~v~~G~~~~l~C~~~~~-~~~~v~W~~~g~-----~~------------~~~~~~~~~~~~--~~~~L~i~~~~~~d~G 75 (579)
+.+.+|++++|.|.+.+. +...+.||+... .+ ....++.+.... ...+|+|.+++.+|+|
T Consensus 1 ~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G 80 (105)
T cd00099 1 LSVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA 80 (105)
T ss_pred CeecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence 468899999999999875 556899999432 11 012333333333 5689999999999999
Q ss_pred EEEEEEEcCCe
Q psy16852 76 VYTCKATNIGG 86 (579)
Q Consensus 76 ~Y~C~~~~~~g 86 (579)
.|.|.+.+..+
T Consensus 81 ~Y~C~v~~~~~ 91 (105)
T cd00099 81 VYYCAVSLSGG 91 (105)
T ss_pred EEEEEEecCCC
Confidence 99999987554
No 252
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.70 E-value=1.7e-07 Score=70.92 Aligned_cols=76 Identities=20% Similarity=0.231 Sum_probs=50.3
Q ss_pred CCCEEEEEEEEeeCC---CeeEEEECCE-----------EecC--C--CCEEEEE-----eCCEEEEEEcCCCCCCCEEE
Q psy16852 21 EQPALFTCKVEGHPL---PTMTWQKDGT-----------ELHA--T--EHYLITT-----VESVSTLEIINPTKEDIGVY 77 (579)
Q Consensus 21 G~~~~l~C~~~~~~~---~~v~W~~~g~-----------~~~~--~--~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y 77 (579)
|++|+|+|...+... ..+.|++... .... . ...++.. ..+..+|+|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 789999999863221 2688887441 1110 0 0112222 12457899999999999999
Q ss_pred EEEEEcCCeeeEEEEEEEE
Q psy16852 78 TCKATNIGGVATCSANLIV 96 (579)
Q Consensus 78 ~C~~~~~~g~~~~~~~~~v 96 (579)
+|.+.+..+..+..+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999987776666666654
No 253
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.70 E-value=9.4e-08 Score=71.92 Aligned_cols=68 Identities=15% Similarity=0.267 Sum_probs=50.5
Q ss_pred eeeeCCCCEEEEEEEEee--CCCeeEEEECCE--E---e---------cCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEE
Q psy16852 16 VVSHQEQPALFTCKVEGH--PLPTMTWQKDGT--E---L---------HATEHYLITTVESVSTLEIINPTKEDIGVYTC 79 (579)
Q Consensus 16 ~~v~~G~~~~l~C~~~~~--~~~~v~W~~~g~--~---~---------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 79 (579)
+.|.+|++|+|.|.+.+. ....+.|||... . + ....++..........|+|.+++.+|+|.|.|
T Consensus 1 ~~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C 80 (98)
T cd04984 1 LSVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYC 80 (98)
T ss_pred CccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEE
Confidence 358899999999998654 445799998321 1 1 11235555555567889999999999999999
Q ss_pred EEEc
Q psy16852 80 KATN 83 (579)
Q Consensus 80 ~~~~ 83 (579)
.+.+
T Consensus 81 ~~~~ 84 (98)
T cd04984 81 QVWD 84 (98)
T ss_pred EEcc
Confidence 9864
No 254
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.70 E-value=1.3e-07 Score=71.03 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=56.2
Q ss_pred CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeE-EEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852 415 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTM-EFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT 493 (579)
Q Consensus 415 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 493 (579)
.+..+.+|+++.|.|.....+...+.|+|+... ..+..+ .+... ... ....+..+|+ ..+..
T Consensus 6 ~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~---~~~~~I~~y~~~--~~~---~~~gp~~~gR---------~~~~~ 68 (105)
T cd05774 6 VPPQVAEGENVLLLVHNLPENLLAYAWYKGKTV---SPNFLIASYIIS--TNS---STPGPAYSGR---------ETIYP 68 (105)
T ss_pred cCCcccCCCCEEEEecCCCCCceEEEEEcCCCC---CCCEEEEEEECC--Ccc---cccCcccCCc---------EEEeC
Confidence 344577899999999654333339999995321 111111 11100 000 0001111222 23333
Q ss_pred eCCeeEEEEeecccccceeEEEEEEeCC-eeEEEEEEEE
Q psy16852 494 DGNRSVLLISKITRDQIGDVTCRAENVA-GSVTCTATLS 531 (579)
Q Consensus 494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~~~~~~l~ 531 (579)
++ .|.|++++.+|+|.|+|.+.|.. ......++|.
T Consensus 69 ng---SL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 69 NG---SLLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred CC---cEEEecCCcccCEEEEEEEEeCCccEEEEEEEEE
Confidence 33 59999999999999999999987 4555566655
No 255
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=98.68 E-value=0.0018 Score=74.05 Aligned_cols=364 Identities=13% Similarity=0.118 Sum_probs=192.6
Q ss_pred CceeeeCCCCEEEEEEEEeeCCCeeEEEECCEE-ecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEE--EcCCeeeEE
Q psy16852 14 QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTE-LHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA--TNIGGVATC 90 (579)
Q Consensus 14 ~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~--~~~~g~~~~ 90 (579)
....+..|++|+|.-.........++|...+.. ......+. .+ +-...|.|.-.+ .|..|....
T Consensus 1705 S~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~p~~------tH-------tf~~~G~y~VtVta~N~vss~~~ 1771 (2740)
T TIGR00864 1705 SDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETSEPFM------SH-------SFPSAGLHLVTMKAFNELGSANA 1771 (2740)
T ss_pred cCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccCCCce------EE-------EccCCceEEEEEEEEccccccce
Confidence 344566799999998776666778999876532 11111100 01 133478887754 577787777
Q ss_pred EEEEEEEecccCCCCCceecC--CCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEEC
Q psy16852 91 SANLIVLEKEESGEAPKFTKP--LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSIS 168 (579)
Q Consensus 91 ~~~~~v~~~~~~~~~~~~~~~--~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 168 (579)
+..+.|.++-. -..+... .....+..|..+.|.-.++......+.|..++..-..... ..
T Consensus 1772 s~~V~VqepV~---GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~gk~-----------v~---- 1833 (2740)
T TIGR00864 1772 SEEVDVQEPIS---GLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKMGKH-----------AC---- 1833 (2740)
T ss_pred eEEEEEEeccc---cceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccccce-----------eE----
Confidence 77777765421 1122211 1222455677887777764334457778776442111111 11
Q ss_pred cCCCCCCeEEEEE--EEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEE
Q psy16852 169 EATPQDEAVYSVK--AVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWF 246 (579)
Q Consensus 169 ~~~~~d~G~Y~C~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~ 246 (579)
.+..+.|.|+.. |.|..+....+..+.++.... .+........+..|+.++|.+.+...+...+.|.
T Consensus 1834 -~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~----------~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~ 1902 (2740)
T TIGR00864 1834 -MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIF----------GLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQ 1902 (2740)
T ss_pred -EecCCCeEEEEEEEEEcccCcceeeeeEEEEEecc----------eEEEecccccccCCCEEEEEEEecCCCceEEEEE
Confidence 334578988755 678888777777777763211 2222334445778999999998887777789997
Q ss_pred ECC-EEeccCceEEeCCeEEEEEcccCCCCCeEEE--EEEEcCCeeeEEEEEEEEEec-cceeeeeeeeeeccccCceee
Q psy16852 247 KNG-KEIVSKDIETKDNVTKLVIKQTTKKTTGKYE--IRVVNEAGEARTSGSVTITVA-EAETVMMDVRVESHPTASFQW 322 (579)
Q Consensus 247 ~~~-~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~--C~a~n~~g~~~~~~~~~v~~~-~~~~~~l~~~~~~~~~~~~~~ 322 (579)
..+ .+... ..+..+. . .....|.|. -.|.|..+.......+.|.-. .+-.+.-.|.. ..+...-..
T Consensus 1903 fGdgs~~~~------t~~~t~~-H--sY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~gL~I~~~c~~-~~~~g~~~t 1972 (2740)
T TIGR00864 1903 IGGAAPEVL------QPGPRFS-H--SFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVRGLQIPDCCAA-GIATGEEKN 1972 (2740)
T ss_pred eCCCCceee------cCCCeEE-e--ecCCCCcEEEEEEEEeccceeeeeEEEEEEEeccceEecCCccc-ceecCceEE
Confidence 754 22211 0001111 1 123345564 445677777655555544322 22222223321 111111111
Q ss_pred eecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEE--EEcCceeEEEEEEEEEEe
Q psy16852 323 FIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCT--AVNPVGEAVAAATLAVEE 400 (579)
Q Consensus 323 ~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~--a~n~~g~~~~~~~l~v~~ 400 (579)
+. ..+...-+..+.|+..-..+..+..+.. .. ...+..+ ...|.|+.. |.|..|.......+.|+.
T Consensus 1973 F~----A~v~~g~~V~f~W~f~~~~~~g~~~~~~-~G--~~vty~~-----~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~ 2040 (2740)
T TIGR00864 1973 FT----ANVQRGKPVAFAWTFDLHHLHGDSLVIH-MG--KDVSYTA-----EAAGLLEIQLGAFNALGAENITLQLEAQD 2040 (2740)
T ss_pred EE----EEEecCCceEEEEEeeecccCCCcceee-cC--CceEEcc-----CCCcEEEEEEEEEcccCcccccEEEEEEe
Confidence 11 1222233445888755333322221111 11 1112222 467877665 568778776666777775
Q ss_pred cccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCC-CeEEEeeCCE
Q psy16852 401 KEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT-PSICWYRGKE 446 (579)
Q Consensus 401 ~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-~~v~W~~~~~ 446 (579)
... .......+.....+..++|.|.+...+. ..+.|-+++.
T Consensus 2041 ~i~-----~~~L~~~p~~~~~n~~v~f~~~~~~~~~~v~~~WDFGDG 2082 (2740)
T TIGR00864 2041 ALM-----DAALQAGPQDCFTNKMAQFEAATSPKPNFMACHWDFGDG 2082 (2740)
T ss_pred hee-----eEEEeecCcceecCceEEEEEEEccCCCcEEEEEEecCC
Confidence 321 1111112334556889999999865443 4899988643
No 256
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.68 E-value=2.5e-07 Score=70.93 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=34.6
Q ss_pred CeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 496 NRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 496 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
....|.|.+++.+|+|.|.|.+.+..+..+..+.|+|.
T Consensus 66 ~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 66 LDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred CcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEE
Confidence 45679999999999999999999999999999999875
No 257
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.66 E-value=3.4e-07 Score=70.06 Aligned_cols=78 Identities=23% Similarity=0.350 Sum_probs=53.9
Q ss_pred CCCCEEEEEEEEeeC----------CCeeEEEEC--CEEe----------cCCCCE--EEEE-----eCCEEEEEEcCCC
Q psy16852 20 QEQPALFTCKVEGHP----------LPTMTWQKD--GTEL----------HATEHY--LITT-----VESVSTLEIINPT 70 (579)
Q Consensus 20 ~G~~~~l~C~~~~~~----------~~~v~W~~~--g~~~----------~~~~~~--~~~~-----~~~~~~L~i~~~~ 70 (579)
-|++|+|+|.....+ ...|.|||. +... .....+ ++.. ..+..+|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 389999999997543 246999984 2111 001111 2222 2356889999999
Q ss_pred CCCCEEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 71 KEDIGVYTCKATNIGGVATCSANLIVL 97 (579)
Q Consensus 71 ~~d~G~Y~C~~~~~~g~~~~~~~~~v~ 97 (579)
.+|+|.|.|.+.......+..+.|.|.
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 999999999998866666777777775
No 258
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.66 E-value=5.2e-07 Score=68.31 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=32.6
Q ss_pred CeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 496 NRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 496 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
...+|+|.+++.+|+|.|+|.+.|..+..+..+.|+|
T Consensus 63 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 63 GSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred CcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence 4577999999999999999999998888888888775
No 259
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.65 E-value=2.1e-07 Score=71.79 Aligned_cols=91 Identities=14% Similarity=0.150 Sum_probs=54.2
Q ss_pred CCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852 414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT 493 (579)
Q Consensus 414 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 493 (579)
+....+.+|++++|.|.+.+ +.+.+.|+|.... ......+. +....... +. .....++.+..
T Consensus 5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g--~~~~~l~~-----------~~~~~~~~---~~-~~~~~r~~~~~ 66 (110)
T cd05899 5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPG--KGLQLLFY-----------SNGGSLNE---EE-GDPKDRFSASR 66 (110)
T ss_pred CCceEEcCCCcEEEEEEECC-CCCEEEEEEECCC--CCcEEEEE-----------EcCCCceE---ec-CccCCceEEEC
Confidence 44567899999999999987 7779999995321 01111111 11000000 00 01112222222
Q ss_pred e-CCeeEEEEeecccccceeEEEEEEeCCe
Q psy16852 494 D-GNRSVLLISKITRDQIGDVTCRAENVAG 522 (579)
Q Consensus 494 ~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 522 (579)
+ .....|+|.+++.+|+|.|.|.+.+..|
T Consensus 67 ~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~~~ 96 (110)
T cd05899 67 PSLTRSSLTIKSAEPEDSAVYLCASSLGGG 96 (110)
T ss_pred cCCCccEEEECCCChhhCEEEEEEeeCCCC
Confidence 2 2567899999999999999999987543
No 260
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.63 E-value=1.9e-07 Score=72.62 Aligned_cols=75 Identities=17% Similarity=0.264 Sum_probs=51.2
Q ss_pred ccCceeeeCCCCEEEEEEEEeeC----CCeeEEEECCE------Ee---------c-CCCCE--EEEEe----CCEEEEE
Q psy16852 12 KIQPVVSHQEQPALFTCKVEGHP----LPTMTWQKDGT------EL---------H-ATEHY--LITTV----ESVSTLE 65 (579)
Q Consensus 12 ~p~~~~v~~G~~~~l~C~~~~~~----~~~v~W~~~g~------~~---------~-~~~~~--~~~~~----~~~~~L~ 65 (579)
.|..+.+.+|+.++|.|.+.... ...+.||+... .+ . ...++ ++... .+..+|+
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 47788999999999999986432 14699987321 11 0 11122 11111 2357899
Q ss_pred EcCCCCCCCEEEEEEEEcCCe
Q psy16852 66 IINPTKEDIGVYTCKATNIGG 86 (579)
Q Consensus 66 i~~~~~~d~G~Y~C~~~~~~g 86 (579)
|.+++.+|+|.|+|.+.+...
T Consensus 84 I~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred EeeCCcccCEEEEEEEEeCCC
Confidence 999999999999999987544
No 261
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.63 E-value=3.8e-07 Score=71.32 Aligned_cols=88 Identities=15% Similarity=0.289 Sum_probs=60.4
Q ss_pred cccccCceeeeCCCCEEEEEEEE-eeCCCeeEEEECCE-----Eec--------------CCCCEEEEEe--CCEEEEEE
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVE-GHPLPTMTWQKDGT-----ELH--------------ATEHYLITTV--ESVSTLEI 66 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~-~~~~~~v~W~~~g~-----~~~--------------~~~~~~~~~~--~~~~~L~i 66 (579)
+...|..+.+.+|++++|.|... ......+.|++... .+. ...+..+... ....+|.|
T Consensus 4 vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i 83 (114)
T PF07686_consen 4 VTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTI 83 (114)
T ss_dssp EEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEE
Confidence 34458889999999999999998 34455899998322 111 1123333333 23789999
Q ss_pred cCCCCCCCEEEEEEEEcCC-eeeEEEEEEEE
Q psy16852 67 INPTKEDIGVYTCKATNIG-GVATCSANLIV 96 (579)
Q Consensus 67 ~~~~~~d~G~Y~C~~~~~~-g~~~~~~~~~v 96 (579)
.+++.+|+|.|.|.+.... ......+.|.|
T Consensus 84 ~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 84 KNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp SSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 9999999999999998762 33334444443
No 262
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.62 E-value=3.2e-07 Score=71.62 Aligned_cols=90 Identities=18% Similarity=0.229 Sum_probs=54.8
Q ss_pred CceeeecCCCeEEEEEEEe--eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852 415 KPVIAEAQSPATLKATVTG--RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM 492 (579)
Q Consensus 415 ~~~~~~~g~~~~l~C~~~g--~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~ 492 (579)
....+.+|+.++|.|.+.+ .+.+.+.|++.... ......+.. .. .+...+.-.....++.+.
T Consensus 6 ~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g--~~~~~l~~~-----------~~---~~~~~~~~~~~~~r~~~~ 69 (116)
T cd04982 6 LSITREESKSVTISCKVSGIDFSTTYIHWYRQKPG--QALERLLYV-----------SS---TSTQRKLSGGTKNKFEAR 69 (116)
T ss_pred CeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCC--CCCEEEEEE-----------ec---CCCcEEeCcccCCCEEEE
Confidence 4456889999999999987 67779999995310 011111111 10 000000001112233444
Q ss_pred eeC--CeeEEEEeecccccceeEEEEEEeC
Q psy16852 493 TDG--NRSVLLISKITRDQIGDVTCRAENV 520 (579)
Q Consensus 493 ~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~ 520 (579)
.+. ....|+|.+++.+|+|.|.|.+...
T Consensus 70 ~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 99 (116)
T cd04982 70 KDVGKSTSTLTIQNLEKEDSATYYCAYWES 99 (116)
T ss_pred EECCCCEEEEEEEECCHHHCEEEEEEEecC
Confidence 444 6788999999999999999998643
No 263
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.61 E-value=7.4e-07 Score=67.81 Aligned_cols=39 Identities=13% Similarity=0.179 Sum_probs=34.4
Q ss_pred CCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
....+|+|.+++.+|+|.|+|.+.+........+.|.|.
T Consensus 71 ~~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 71 PSDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred CCCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 356789999999999999999999888888888888875
No 264
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.60 E-value=6e-07 Score=68.88 Aligned_cols=77 Identities=16% Similarity=0.170 Sum_probs=53.7
Q ss_pred CceEEccCCcEEEEEEEEeec----CCeEEEEE---------------CCEEccCC-----CCceEEEcCCCCeEEEEEC
Q psy16852 113 KPVIAEAQSPATLKATVTGRP----TPSICWYR---------------GKEEILPD-----NGHTMEFNPTTGECVLSIS 168 (579)
Q Consensus 113 ~~~~~~~g~~~~l~C~~~~~p----~~~i~W~~---------------~~~~~~~~-----~~~~~~~~~~~~~~~l~i~ 168 (579)
..+.+..|+.++|.|.+.... ...|.|.+ ++...... .+..+..+...+..+|.|.
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~ 85 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH 85 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence 456678899999999986532 36999933 23322111 1333333445567899999
Q ss_pred cCCCCCCeEEEEEEEcCCcee
Q psy16852 169 EATPQDEAVYSVKAVNTFGRA 189 (579)
Q Consensus 169 ~~~~~d~G~Y~C~~~~~~~~~ 189 (579)
+++.+|.|.|+|.+.|..+..
T Consensus 86 nv~~sD~G~Y~C~v~n~p~~~ 106 (116)
T cd05879 86 NLDYTDNGTFTCDVKNPPDIV 106 (116)
T ss_pred cCCcccCEEEEEEEEcCCCcC
Confidence 999999999999999876543
No 265
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.60 E-value=2.9e-07 Score=71.80 Aligned_cols=75 Identities=19% Similarity=0.285 Sum_probs=54.7
Q ss_pred cccccCceeeeCCCCEEEEEEEEee-CCCeeEEEEC--CEE---e---------cCCCCEEEEE--eCCEEEEEEcCCCC
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEGH-PLPTMTWQKD--GTE---L---------HATEHYLITT--VESVSTLEIINPTK 71 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~~-~~~~v~W~~~--g~~---~---------~~~~~~~~~~--~~~~~~L~i~~~~~ 71 (579)
+...|..+.+.+|++|+|+|..... ....+.|||. +.. + ....++.... .....+|+|.+++.
T Consensus 2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~ 81 (116)
T cd07706 2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL 81 (116)
T ss_pred cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH
Confidence 4566888999999999999998653 3457999983 111 1 1123444432 24568899999999
Q ss_pred CCCEEEEEEEEc
Q psy16852 72 EDIGVYTCKATN 83 (579)
Q Consensus 72 ~d~G~Y~C~~~~ 83 (579)
+|+|.|.|.+..
T Consensus 82 ~Dsg~Y~C~~~~ 93 (116)
T cd07706 82 EDSAKYFCALST 93 (116)
T ss_pred HHCEEEEEEEEC
Confidence 999999999974
No 266
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.58 E-value=2.8e-07 Score=68.67 Aligned_cols=65 Identities=25% Similarity=0.229 Sum_probs=46.5
Q ss_pred CCCEEEEEEEEeeCCCeeEEEECCEEecC----------------CCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852 21 EQPALFTCKVEGHPLPTMTWQKDGTELHA----------------TEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI 84 (579)
Q Consensus 21 G~~~~l~C~~~~~~~~~v~W~~~g~~~~~----------------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 84 (579)
|++|+|.|.........+.|+++...... ....+..... +.+|.|.+++.+|+|.|+|.+...
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~-~~sL~I~~l~~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYP-NGSLLIQNLTKEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcC-CceEEEccCCchhcEEEEEEEEcC
Confidence 89999999987655568999996532110 0111222323 388999999999999999999876
Q ss_pred Ce
Q psy16852 85 GG 86 (579)
Q Consensus 85 ~g 86 (579)
.+
T Consensus 80 ~~ 81 (92)
T cd05741 80 NG 81 (92)
T ss_pred CC
Confidence 54
No 267
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.57 E-value=2.5e-07 Score=67.99 Aligned_cols=79 Identities=13% Similarity=0.121 Sum_probs=54.0
Q ss_pred ccccccCceeeeCCCCEEEEEEEEe-eCCCe--eEEEECCEEecCCCCEEE--EEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 8 RFIEKIQPVVSHQEQPALFTCKVEG-HPLPT--MTWQKDGTELHATEHYLI--TTVESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 8 ~~~~~p~~~~v~~G~~~~l~C~~~~-~~~~~--v~W~~~g~~~~~~~~~~~--~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
.+...+.+..+.+|+.++|+|.+.+ .|.+. |.|||++..+........ .......+|++..-..+|...|+|+|.
T Consensus 3 ~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~ 82 (100)
T cd05755 3 SVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETE 82 (100)
T ss_pred eEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEE
Confidence 3455566667899999999999976 56665 799999999864321110 111224677776555555669999998
Q ss_pred cCCe
Q psy16852 83 NIGG 86 (579)
Q Consensus 83 ~~~g 86 (579)
+..+
T Consensus 83 l~l~ 86 (100)
T cd05755 83 LDLR 86 (100)
T ss_pred eccC
Confidence 7654
No 268
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.57 E-value=6.9e-07 Score=67.15 Aligned_cols=74 Identities=18% Similarity=0.315 Sum_probs=49.3
Q ss_pred CEEEEEEEEeeC---CCeeEEEECCE-----Ee-----------cCC--CCEEEEE--eCCEEEEEEcCCCCCCCEEEEE
Q psy16852 23 PALFTCKVEGHP---LPTMTWQKDGT-----EL-----------HAT--EHYLITT--VESVSTLEIINPTKEDIGVYTC 79 (579)
Q Consensus 23 ~~~l~C~~~~~~---~~~v~W~~~g~-----~~-----------~~~--~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C 79 (579)
+++|+|...... ...+.|+|... .+ ... .+.++.. .....+|+|.+++.+|+|.|+|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 689999986543 33799998321 11 111 1222221 1236789999999999999999
Q ss_pred EEEc-CCeeeEEEEEEEE
Q psy16852 80 KATN-IGGVATCSANLIV 96 (579)
Q Consensus 80 ~~~~-~~g~~~~~~~~~v 96 (579)
.+.+ ..|..+..+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9986 5566666666665
No 269
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.57 E-value=5.4e-07 Score=67.56 Aligned_cols=75 Identities=21% Similarity=0.325 Sum_probs=53.9
Q ss_pred ecCCCeEEEEEEEee-CC-CeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCe
Q psy16852 420 EAQSPATLKATVTGR-PT-PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR 497 (579)
Q Consensus 420 ~~g~~~~l~C~~~g~-p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~ 497 (579)
..|+.++|.|.+.|+ |. +.++|+++|..+..... .........|.|+..
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~---------------~~~~~~~~~gt~~~~-------------- 61 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVT---------------TTPPVPNSDGTYSVS-------------- 61 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCcee---------------ccccccCCCCCEEEE--------------
Confidence 368999999999997 64 58999999998855432 122333444555433
Q ss_pred eEEEEeecccccceeEEEEEEeCCee
Q psy16852 498 SVLLISKITRDQIGDVTCRAENVAGS 523 (579)
Q Consensus 498 ~~l~i~~~~~~d~G~Y~C~a~n~~g~ 523 (579)
+.|.+.....+|.|.|+|.|.|....
T Consensus 62 s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 62 SQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred EEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 34888877778999999999987654
No 270
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.56 E-value=8.7e-07 Score=71.57 Aligned_cols=87 Identities=17% Similarity=0.245 Sum_probs=61.9
Q ss_pred cCceeeeCCCCEEEEEEEE-eeCCCeeEEEECCEEe----------cCC--CCEE-EEEeCCEEEEEEcCCCCCCCEEEE
Q psy16852 13 IQPVVSHQEQPALFTCKVE-GHPLPTMTWQKDGTEL----------HAT--EHYL-ITTVESVSTLEIINPTKEDIGVYT 78 (579)
Q Consensus 13 p~~~~v~~G~~~~l~C~~~-~~~~~~v~W~~~g~~~----------~~~--~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~ 78 (579)
...+.|++|++|+|.|... +...+.+.|+|....+ ..+ .+.. .........|+|.+++.+|+|.|+
T Consensus 22 ~~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~ 101 (189)
T PHA02987 22 FVKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYT 101 (189)
T ss_pred eEEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEE
Confidence 3457899999999999984 5556789999964322 111 1222 122234688999999999999999
Q ss_pred EEEEc-CCe-eeEEEEEEEEEec
Q psy16852 79 CKATN-IGG-VATCSANLIVLEK 99 (579)
Q Consensus 79 C~~~~-~~g-~~~~~~~~~v~~~ 99 (579)
|.... ..| ..+..+-|+|...
T Consensus 102 C~F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 102 CIFNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EEEEecCCCCCceeEEEEEEEch
Confidence 99863 345 6777778888654
No 271
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.55 E-value=1.1e-06 Score=66.57 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=52.7
Q ss_pred CCCEEEEEEEEeeC-------CCeeEEEEC-----CEEe------------cCCCCEEEEEe-----CCEEEEEEcCCCC
Q psy16852 21 EQPALFTCKVEGHP-------LPTMTWQKD-----GTEL------------HATEHYLITTV-----ESVSTLEIINPTK 71 (579)
Q Consensus 21 G~~~~l~C~~~~~~-------~~~v~W~~~-----g~~~------------~~~~~~~~~~~-----~~~~~L~i~~~~~ 71 (579)
|++++|+|.+.-.| .+.+.|+|. .+.. ....+-++... .+..+|+|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 78999999975322 357999874 1111 11122233332 2468999999999
Q ss_pred CCCEEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 72 EDIGVYTCKATNIGGVATCSANLIVL 97 (579)
Q Consensus 72 ~d~G~Y~C~~~~~~g~~~~~~~~~v~ 97 (579)
+|+|.|+|.+.......+..+.|.|.
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEE
Confidence 99999999999866556666677664
No 272
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.53 E-value=1.4e-06 Score=66.71 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=34.6
Q ss_pred eCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 494 DGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
+.....|+|.+++.+|+|.|.|.+..........++|+|.
T Consensus 68 ~~~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 68 NRGDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred CCCcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 3456779999999999999999999987788888888875
No 273
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.53 E-value=1.5e-06 Score=67.86 Aligned_cols=103 Identities=18% Similarity=0.259 Sum_probs=59.3
Q ss_pred CCceeeecCCCeEEEEEEE-eeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852 414 LKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM 492 (579)
Q Consensus 414 ~~~~~~~~g~~~~l~C~~~-g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~ 492 (579)
+....+.+|+++.|.|... ......+.|++... ... ..+.+ .........+.-.....+..+.
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~----~~~-----------~~~i~-~~~~~~~~~~~~~~~~~r~~~~ 71 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSP----GQG-----------PQLII-RYSLSSTNETPTPSYSGRFTFS 71 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEET----TSE-----------EEEEE-EEETTEEEEEEETTETTTEEEE
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECc----ccc-----------ceeee-eeccceeeeccccceeeeeeee
Confidence 4556789999999999998 44555899999321 000 00111 0000000000000111122233
Q ss_pred ee--CCeeEEEEeecccccceeEEEEEEeC-CeeEEEEEEEEE
Q psy16852 493 TD--GNRSVLLISKITRDQIGDVTCRAENV-AGSVTCTATLSL 532 (579)
Q Consensus 493 ~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~-~g~~~~~~~l~v 532 (579)
.+ .....|+|.+++.+|+|.|.|.+... .+.....+.|+|
T Consensus 72 ~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 72 GNGSQNNFSLTIKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp EETTTTEEEEEESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred ecccCCeEEEEECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 33 34678999999999999999999887 334455555553
No 274
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.51 E-value=1.5e-06 Score=61.21 Aligned_cols=74 Identities=19% Similarity=0.171 Sum_probs=49.6
Q ss_pred EEEEEEEEe-eCCCeeEEEECCEEecCCCCEEEEEeC---CEEEEEEcCCCCCCCEEEEEEEEcCCe-eeEEEEEEEEE
Q psy16852 24 ALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVE---SVSTLEIINPTKEDIGVYTCKATNIGG-VATCSANLIVL 97 (579)
Q Consensus 24 ~~l~C~~~~-~~~~~v~W~~~g~~~~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~~~~g-~~~~~~~~~v~ 97 (579)
+.|+|.+.| .|.+.|+||+++.++.......-.... ..++|.|..-..+|...|+|+|.|..- .......|.|+
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 689999966 577899999999998654221101111 246788877777788899999988653 23334444443
No 275
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.51 E-value=8.9e-07 Score=67.90 Aligned_cols=87 Identities=20% Similarity=0.270 Sum_probs=52.7
Q ss_pred eeecCCCeEEEEEEEee-CCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeC-
Q psy16852 418 IAEAQSPATLKATVTGR-PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDG- 495 (579)
Q Consensus 418 ~~~~g~~~~l~C~~~g~-p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~- 495 (579)
++.+|+.++|.|.+.+. +...+.|++.... .....+........ . ......+++. +..+.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~---~~~~~i~~~~~~~~-~-----~~~~~~~r~~---------~~~~~~ 63 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPG---KGPELLIYISSNGS-Q-----YAGGVKGRFS---------GTRDSS 63 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCC---CCCEEEEEEeCCCC-c-----cCccCCCcEE---------EEEecc
Confidence 46789999999999876 6669999995321 11111111000000 0 0111222222 22222
Q ss_pred -CeeEEEEeecccccceeEEEEEEeCCe
Q psy16852 496 -NRSVLLISKITRDQIGDVTCRAENVAG 522 (579)
Q Consensus 496 -~~~~l~i~~~~~~d~G~Y~C~a~n~~g 522 (579)
....|+|.+++.+|+|.|.|.+.+..+
T Consensus 64 ~~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 64 KSSFTLTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred CCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence 456799999999999999999998765
No 276
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.51 E-value=2e-06 Score=66.46 Aligned_cols=94 Identities=17% Similarity=0.195 Sum_probs=53.1
Q ss_pred CceeeecCCCeEEEEEEEeeC----CCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEc-cccCCCceeEEEEeeccee
Q psy16852 415 KPVIAEAQSPATLKATVTGRP----TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSIS-EATPQDEAVYSVKASSTET 489 (579)
Q Consensus 415 ~~~~~~~g~~~~l~C~~~g~p----~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~-~~~~~d~g~y~c~~~~~~~ 489 (579)
..+.+.+|+.++|.|.....+ ...|.|++.. ........+ +... .......+.|.-++.-.
T Consensus 6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~--~~~~~~~~v----------~~~~~~~~~~~~~~f~~R~~~~-- 71 (115)
T cd05880 6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRP--LDGGREESV----------FYYHKRPYPPPDGRFKGRVVWD-- 71 (115)
T ss_pred ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEEC--CCCCceeEE----------EEECCCccccCcccccCeEEEe--
Confidence 445688999999999987443 2369998621 100110001 1111 01111223332222100
Q ss_pred eeeeeCCeeEEEEeecccccceeEEEEEEeCCee
Q psy16852 490 KIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523 (579)
Q Consensus 490 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 523 (579)
-........|+|.+++.+|+|.|+|.+.|..+.
T Consensus 72 -~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 72 -GNIMRRDASILIWQLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred -cCCcCCceEEEEeeCChhhCEEEEEEEEeCCCC
Confidence 011334567999999999999999999987663
No 277
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.51 E-value=7.4e-07 Score=66.34 Aligned_cols=90 Identities=22% Similarity=0.340 Sum_probs=52.2
Q ss_pred CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEE
Q psy16852 422 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL 501 (579)
Q Consensus 422 g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~ 501 (579)
|++|+|.|.....+...+.|+++....... .+........ .. ..+.| ..+..+.. . ..|.
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~---~i~~~~~~~~---~~------~~~~~-----~~R~~~~~--~-~sL~ 60 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEA---EIASYIATNS---TV------FGPAY-----SGRETIYP--N-GSLL 60 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcce---EEEEEecCCc---ee------ECCCc-----CCeEEEcC--C-ceEE
Confidence 789999999876666699999975432111 1100000000 00 00011 11122222 2 6799
Q ss_pred EeecccccceeEEEEEEeCCe-eEEEEEEEE
Q psy16852 502 ISKITRDQIGDVTCRAENVAG-SVTCTATLS 531 (579)
Q Consensus 502 i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~ 531 (579)
|.+++.+|+|.|+|.+....| .....+.|.
T Consensus 61 I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l~ 91 (92)
T cd05741 61 IQNLTKEDSGTYTLQIISTNGVTENAKFFLR 91 (92)
T ss_pred EccCCchhcEEEEEEEEcCCCcEEEEEEEEE
Confidence 999999999999999998864 344444443
No 278
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.49 E-value=1e-06 Score=67.46 Aligned_cols=86 Identities=12% Similarity=0.183 Sum_probs=52.6
Q ss_pred CCceeeecCCCeEEEEEEEeeC-CCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852 414 LKPVIAEAQSPATLKATVTGRP-TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM 492 (579)
Q Consensus 414 ~~~~~~~~g~~~~l~C~~~g~p-~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~ 492 (579)
+....+.+|++++|.|.+.+.. ...+.|++.... .... .+.. ... .....+.++ +.+.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g--~~~~-~l~~--~~~-------~~~~~~~~r---------~~~~ 65 (106)
T cd04980 7 PATLSVSPGESATISCKASQSVSSNYLAWYQQKPG--QAPK-LLIY--GAS-------TLASGTPSR---------FSGS 65 (106)
T ss_pred CCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCC--CCcE-EEEE--Ccc-------ccCCCCCCC---------EEEe
Confidence 3445689999999999997665 568999984310 0001 1110 000 000111122 2333
Q ss_pred eeCCeeEEEEeecccccceeEEEEEEeC
Q psy16852 493 TDGNRSVLLISKITRDQIGDVTCRAENV 520 (579)
Q Consensus 493 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 520 (579)
.+.....|+|.+++.+|+|.|.|.+.+.
T Consensus 66 ~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 66 GSGTDFTLTISRVEPEDAAVYYCQQYGT 93 (106)
T ss_pred ccCCEEEEEECCCChHHCEEEEEEEeCC
Confidence 3456677999999999999999999754
No 279
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.49 E-value=1.2e-06 Score=66.02 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=32.3
Q ss_pred CeeEEEEeecccccceeEEEEEEe-CCeeEEEEEEEEE
Q psy16852 496 NRSVLLISKITRDQIGDVTCRAEN-VAGSVTCTATLSL 532 (579)
Q Consensus 496 ~~~~l~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~v 532 (579)
....|+|.+++.+|+|.|.|.+.+ ..|.....+.|.|
T Consensus 60 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 60 EDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred CceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEe
Confidence 467799999999999999999875 6788888888886
No 280
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.49 E-value=1.8e-06 Score=64.11 Aligned_cols=74 Identities=24% Similarity=0.331 Sum_probs=49.7
Q ss_pred CEEEEEEEEee-CC---CeeEEEECC--E--Ee-----------cCCCCEEEEEe---CCEEEEEEcCCCCCCCEEEEEE
Q psy16852 23 PALFTCKVEGH-PL---PTMTWQKDG--T--EL-----------HATEHYLITTV---ESVSTLEIINPTKEDIGVYTCK 80 (579)
Q Consensus 23 ~~~l~C~~~~~-~~---~~v~W~~~g--~--~~-----------~~~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~ 80 (579)
.++|.|..... +. .+|.|.+.. . .+ .....-++... .+..+|+|.+++.+|+|.|+|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 68999999742 21 169998731 1 11 11111122221 2358899999999999999999
Q ss_pred EEc-CCeeeEEEEEEEE
Q psy16852 81 ATN-IGGVATCSANLIV 96 (579)
Q Consensus 81 ~~~-~~g~~~~~~~~~v 96 (579)
+.+ ..|..+..+.|+|
T Consensus 82 v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 82 FATFPTGNRESQLNLTV 98 (99)
T ss_pred EEeCCCCCeEEEEEEEE
Confidence 998 5677777777776
No 281
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.47 E-value=2.1e-06 Score=61.84 Aligned_cols=68 Identities=22% Similarity=0.431 Sum_probs=47.3
Q ss_pred eEEEEEEEe-eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEe
Q psy16852 425 ATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS 503 (579)
Q Consensus 425 ~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~ 503 (579)
+.|.|.+.+ +|.+.|.|++++..+.... .. ....+.|.|+.. +.|.+.
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~--~~---------------~~~~~~~~~~~~--------------s~l~~~ 50 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK--LK---------------EEDENGKTFTVT--------------SSLRFQ 50 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce--ee---------------EecCCCCEEEEE--------------EEEEEE
Confidence 689999976 5888999999999885321 10 111223445332 347777
Q ss_pred ecccccceeEEEEEEeCCee
Q psy16852 504 KITRDQIGDVTCRAENVAGS 523 (579)
Q Consensus 504 ~~~~~d~G~Y~C~a~n~~g~ 523 (579)
....++.+.|+|.|.|....
T Consensus 51 ~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 51 VDREDDGAPIICRVDHPALK 70 (82)
T ss_pred cchhhCCCEEEEEEeChhcC
Confidence 77778888999999998664
No 282
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.46 E-value=1.2e-06 Score=68.46 Aligned_cols=74 Identities=15% Similarity=0.117 Sum_probs=51.7
Q ss_pred cccCceeeeCCCCEEEEEEEEeeC------CCeeEEEECCE-----E-ec--C---------CCCEEEE--EeCCEEEEE
Q psy16852 11 EKIQPVVSHQEQPALFTCKVEGHP------LPTMTWQKDGT-----E-LH--A---------TEHYLIT--TVESVSTLE 65 (579)
Q Consensus 11 ~~p~~~~v~~G~~~~l~C~~~~~~------~~~v~W~~~g~-----~-~~--~---------~~~~~~~--~~~~~~~L~ 65 (579)
..|..+.+.+|+.|+|.|...... ...+.||+... . +. . ..++.+. ...+...|+
T Consensus 4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~ 83 (119)
T cd05712 4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLL 83 (119)
T ss_pred cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEE
Confidence 457889999999999999875322 23699998431 1 10 0 1233332 234468899
Q ss_pred EcCCCCCCCEEEEEEEEcC
Q psy16852 66 IINPTKEDIGVYTCKATNI 84 (579)
Q Consensus 66 i~~~~~~d~G~Y~C~~~~~ 84 (579)
|.+++.+|+|.|.|++...
T Consensus 84 I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 84 ISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EccCChhhCeEEEEEEEcC
Confidence 9999999999999998764
No 283
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.46 E-value=1.2e-06 Score=65.46 Aligned_cols=91 Identities=16% Similarity=0.193 Sum_probs=55.2
Q ss_pred ecCCCeEEEEEEEe-eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecce--eeeeeeCC
Q psy16852 420 EAQSPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTE--TKIMTDGN 496 (579)
Q Consensus 420 ~~g~~~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~--~~~~~~~~ 496 (579)
..|++|+|.|.... .....+.|+|....+...... . +. ......++. .++..+..
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~------~-~~---------------~~~~~~~~~f~~R~~~~~~ 59 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGE------E-TA---------------PEIIVTDPSYKERVNFSQN 59 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCC------C-CC---------------CccEEeCCCceeeEEecCC
Confidence 36999999998754 344589999974322110000 0 00 000001111 12333455
Q ss_pred eeEEEEeecccccceeEEEEEEeCCeeE-EEEEEEEE
Q psy16852 497 RSVLLISKITRDQIGDVTCRAENVAGSV-TCTATLSL 532 (579)
Q Consensus 497 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v 532 (579)
...|+|.+++.+|+|.|.|.+.+..|.. ...+.|.|
T Consensus 60 ~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 60 DYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI 96 (97)
T ss_pred ceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence 6779999999999999999999887643 55566654
No 284
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.46 E-value=2.5e-06 Score=60.02 Aligned_cols=76 Identities=18% Similarity=0.306 Sum_probs=50.1
Q ss_pred eEEEEEEEe-eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEe
Q psy16852 425 ATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS 503 (579)
Q Consensus 425 ~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~ 503 (579)
+.|+|.+.| .|.+.|.|++++.++.......... ..+ ....++|.|.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~--~~~------------------------------~t~~S~L~~~ 49 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETW--SRM------------------------------FTVTSQLMLK 49 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceecc--CCC------------------------------cEEEEEEEEE
Confidence 689999875 6888999999999985432110000 000 1234668888
Q ss_pred ecccccceeEEEEEEeCCe-eEEEEEEEEE
Q psy16852 504 KITRDQIGDVTCRAENVAG-SVTCTATLSL 532 (579)
Q Consensus 504 ~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~v 532 (579)
.-..+|...|+|+|.|..- ....+..|.|
T Consensus 50 p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V 79 (82)
T cd05883 50 VTKEDDGVPVICLVDHPAVKDLQTQRYLEV 79 (82)
T ss_pred CchhhCCCEEEEEEcCcccCCceeeEEEEE
Confidence 8888888899999988743 2344445544
No 285
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.45 E-value=2.1e-06 Score=60.04 Aligned_cols=77 Identities=16% Similarity=0.214 Sum_probs=55.8
Q ss_pred ceeeeCCCCEEEEEEEEeeCC--CeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEE
Q psy16852 15 PVVSHQEQPALFTCKVEGHPL--PTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSA 92 (579)
Q Consensus 15 ~~~v~~G~~~~l~C~~~~~~~--~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~ 92 (579)
+..+..|++++|+|.....+. +.|+|...+...-. ....+..+|.+.+++..|+|..+|.+....-.....+
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~ 81 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKL 81 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEe
Confidence 446889999999999965444 48999986554321 1112447899999999999999999986545555556
Q ss_pred EEEEE
Q psy16852 93 NLIVL 97 (579)
Q Consensus 93 ~~~v~ 97 (579)
.+.|+
T Consensus 82 ~V~Vl 86 (88)
T cd07694 82 DIKVL 86 (88)
T ss_pred eEEEE
Confidence 66654
No 286
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.44 E-value=6.2e-07 Score=67.22 Aligned_cols=68 Identities=25% Similarity=0.304 Sum_probs=49.9
Q ss_pred eCCCCEEEEEEEEee-CC-CeeEEEECCEEecCCCC-EEEEEeC-C----EEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852 19 HQEQPALFTCKVEGH-PL-PTMTWQKDGTELHATEH-YLITTVE-S----VSTLEIINPTKEDIGVYTCKATNIGG 86 (579)
Q Consensus 19 ~~G~~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~~~-~~~~~~~-~----~~~L~i~~~~~~d~G~Y~C~~~~~~g 86 (579)
..|+.++|.|.+.|. |. +.++|+++|..+..... ....... + .+.|.|.....+|.|.|+|+|.+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 579999999999987 53 58999999998865542 1111111 1 35677777777899999999988654
No 287
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.43 E-value=1.4e-06 Score=65.47 Aligned_cols=82 Identities=15% Similarity=0.172 Sum_probs=51.4
Q ss_pred eeecCCCeEEEEEEEee--CCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeC
Q psy16852 418 IAEAQSPATLKATVTGR--PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDG 495 (579)
Q Consensus 418 ~~~~g~~~~l~C~~~g~--p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~ 495 (579)
++.+|++++|.|.+.+. ....+.|++.... ......+. .... ...+ ..+++.+..+.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g--~~~~~l~~-----------~~~~--~~~~------~~~rf~~~~~~ 60 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPG--SAPRYLIY-----------EDSD--RPSG------IPDRFSGSKSG 60 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCC--CCccEEEE-----------eccc--cCCC------CCCCEEEEccC
Confidence 46789999999998765 4567999984311 01111111 1100 0000 12233445556
Q ss_pred CeeEEEEeecccccceeEEEEEEeC
Q psy16852 496 NRSVLLISKITRDQIGDVTCRAENV 520 (579)
Q Consensus 496 ~~~~l~i~~~~~~d~G~Y~C~a~n~ 520 (579)
....|+|.+++.+|+|.|.|.+.+.
T Consensus 61 ~~~~L~I~~~~~~Dsg~Y~C~~~~~ 85 (98)
T cd04984 61 NTASLTISGAQTEDEADYYCQVWDS 85 (98)
T ss_pred CEEEEEECCCChhhCEEEEEEEccC
Confidence 7788999999999999999998753
No 288
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.42 E-value=7.3e-06 Score=60.86 Aligned_cols=37 Identities=14% Similarity=0.306 Sum_probs=33.0
Q ss_pred CeeEEEEeecccccceeEEEEEEe-CCeeEEEEEEEEE
Q psy16852 496 NRSVLLISKITRDQIGDVTCRAEN-VAGSVTCTATLSL 532 (579)
Q Consensus 496 ~~~~l~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~v 532 (579)
..+.|+|.+++.+|+|.|+|.+.| ..|..+..+.|.|
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 446699999999999999999999 7888888888886
No 289
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.40 E-value=2.3e-06 Score=64.29 Aligned_cols=37 Identities=19% Similarity=0.393 Sum_probs=31.9
Q ss_pred CeeEEEEeecccccceeEEEEEEe-CCeeEEEEEEEEE
Q psy16852 496 NRSVLLISKITRDQIGDVTCRAEN-VAGSVTCTATLSL 532 (579)
Q Consensus 496 ~~~~l~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~v 532 (579)
..+.|+|.+++.+|+|.|.|.+.+ ..|..++.+.|+|
T Consensus 62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 62 ADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred CceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 456699999999999999999998 6787777888776
No 290
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.40 E-value=2.3e-06 Score=64.07 Aligned_cols=76 Identities=22% Similarity=0.288 Sum_probs=50.1
Q ss_pred CCCEEEEEEEEeeCC-CeeEEEECCE----Eec-----C----CCCE--EEEE---eCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852 21 EQPALFTCKVEGHPL-PTMTWQKDGT----ELH-----A----TEHY--LITT---VESVSTLEIINPTKEDIGVYTCKA 81 (579)
Q Consensus 21 G~~~~l~C~~~~~~~-~~v~W~~~g~----~~~-----~----~~~~--~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (579)
|++++|.|....... -.+.|+|... .+. . ...+ +... .....+|+|.+++.+|+|.|+|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 899999999754332 2699998432 110 0 0111 1111 124678999999999999999998
Q ss_pred Ec-CCeeeEEEEEEEE
Q psy16852 82 TN-IGGVATCSANLIV 96 (579)
Q Consensus 82 ~~-~~g~~~~~~~~~v 96 (579)
.. ..|.....+.|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 74 4567676777766
No 291
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.39 E-value=2.4e-06 Score=63.97 Aligned_cols=39 Identities=23% Similarity=0.234 Sum_probs=32.5
Q ss_pred eCCeeEEEEeecccccceeEEEEEE-eCCeeEEEEEEEEE
Q psy16852 494 DGNRSVLLISKITRDQIGDVTCRAE-NVAGSVTCTATLSL 532 (579)
Q Consensus 494 ~~~~~~l~i~~~~~~d~G~Y~C~a~-n~~g~~~~~~~l~v 532 (579)
+...+.|+|.+++.+|+|.|+|.+. ...|.....+.|+|
T Consensus 57 ~~~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 57 GLNSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred CCCccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence 3456779999999999999999976 55788888888876
No 292
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.38 E-value=3.4e-06 Score=61.93 Aligned_cols=75 Identities=23% Similarity=0.323 Sum_probs=50.9
Q ss_pred CCEEEEEEEEeeC-CCeeEEEECC----EEec-----------CCCCEEEEE---eCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 22 QPALFTCKVEGHP-LPTMTWQKDG----TELH-----------ATEHYLITT---VESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 22 ~~~~l~C~~~~~~-~~~v~W~~~g----~~~~-----------~~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
++++|+|.....+ ...|.|.|.. ..+. .....++.. .....+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 4789999986422 3479998832 1221 111112222 2336899999999999999999986
Q ss_pred -cCCeeeEEEEEEEE
Q psy16852 83 -NIGGVATCSANLIV 96 (579)
Q Consensus 83 -~~~g~~~~~~~~~v 96 (579)
...|....++.|.|
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 56688888888876
No 293
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.37 E-value=1e-05 Score=61.37 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=34.8
Q ss_pred CeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 496 NRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 496 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
...+|.|.+++.+|+|.|+|.+.+........++|+|.
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 45789999999999999999999999999999999886
No 294
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.37 E-value=8.7e-06 Score=61.68 Aligned_cols=77 Identities=18% Similarity=0.314 Sum_probs=52.8
Q ss_pred CCCEEEEEEEEeeC-----------CCeeEEEEC-----CE-----Ee----------cCCCCEEEEEe-----CCEEEE
Q psy16852 21 EQPALFTCKVEGHP-----------LPTMTWQKD-----GT-----EL----------HATEHYLITTV-----ESVSTL 64 (579)
Q Consensus 21 G~~~~l~C~~~~~~-----------~~~v~W~~~-----g~-----~~----------~~~~~~~~~~~-----~~~~~L 64 (579)
|++++|+|.+.-.| ...|.|++- |. .+ ....+-+.... .+..+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 78999999997433 127999873 11 11 01112222321 246899
Q ss_pred EEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIVL 97 (579)
Q Consensus 65 ~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~ 97 (579)
.|.+++.+|+|.|+|.+.+........+.|.|.
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 999999999999999999877666777777764
No 295
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.36 E-value=4e-06 Score=60.37 Aligned_cols=62 Identities=21% Similarity=0.349 Sum_probs=43.3
Q ss_pred EEEEEEEEee-CCCeeEEEECCEEecCCCCEEEEEeCC-----EEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852 24 ALFTCKVEGH-PLPTMTWQKDGTELHATEHYLITTVES-----VSTLEIINPTKEDIGVYTCKATNIGG 86 (579)
Q Consensus 24 ~~l~C~~~~~-~~~~v~W~~~g~~~~~~~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~~~~~~g 86 (579)
+.|+|.+.+. |.+.++|+++|+.+.... .......+ .+.|.+.....+|.+.|+|+|.+...
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l 69 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPAL 69 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhc
Confidence 6899999764 788999999999886433 11111111 24566666666777899999998754
No 296
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.36 E-value=5e-06 Score=59.78 Aligned_cols=69 Identities=20% Similarity=0.376 Sum_probs=47.4
Q ss_pred eEEEEEEEe-eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEe
Q psy16852 425 ATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS 503 (579)
Q Consensus 425 ~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~ 503 (579)
++|+|.+.| +|.+.|.|+++|..+..... .+.. ..+.|.|+.. +.|.+.
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~---------------~~~~~t~~~~--------------s~l~~~ 51 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLE---------------DGNGKTFTVS--------------SSVEFQ 51 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEE---------------CCCCCEEEEE--------------EEEEEE
Confidence 689999987 58889999999998854321 1111 1122344433 337777
Q ss_pred ecccccceeEEEEEEeCCee
Q psy16852 504 KITRDQIGDVTCRAENVAGS 523 (579)
Q Consensus 504 ~~~~~d~G~Y~C~a~n~~g~ 523 (579)
....+|...|+|.|.+....
T Consensus 52 ~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 52 VTREDDGAEITCSVGHESLH 71 (83)
T ss_pred ecchhCCCEEEEEEECcccC
Confidence 77788889999999987643
No 297
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.34 E-value=2.3e-06 Score=65.38 Aligned_cols=68 Identities=19% Similarity=0.374 Sum_probs=47.3
Q ss_pred eeeeCCCCEEEEEEEEeeC-CCeeEEEECCEE---------e--c-----------CCCCEEEEEe--CCEEEEEEcCCC
Q psy16852 16 VVSHQEQPALFTCKVEGHP-LPTMTWQKDGTE---------L--H-----------ATEHYLITTV--ESVSTLEIINPT 70 (579)
Q Consensus 16 ~~v~~G~~~~l~C~~~~~~-~~~v~W~~~g~~---------~--~-----------~~~~~~~~~~--~~~~~L~i~~~~ 70 (579)
+.|++|++|+|+|.+.+.. ...+.|||.... + . ...++..... .....|+|.+++
T Consensus 1 ~~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 80 (107)
T cd07700 1 ILVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK 80 (107)
T ss_pred CEEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence 3689999999999986533 347999983221 0 0 0134443222 335789999999
Q ss_pred CCCCEEEEEEEEc
Q psy16852 71 KEDIGVYTCKATN 83 (579)
Q Consensus 71 ~~d~G~Y~C~~~~ 83 (579)
.+|+|.|.|...+
T Consensus 81 ~~Dsg~YyCa~~~ 93 (107)
T cd07700 81 PEDSGTYFCMTVG 93 (107)
T ss_pred HHHCEEEEEeEcC
Confidence 9999999999753
No 298
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.34 E-value=2e-06 Score=64.75 Aligned_cols=69 Identities=20% Similarity=0.244 Sum_probs=49.0
Q ss_pred eeeeCCCCEEEEEEEEe-eCCCeeEEEECCEE-----e--------cCCCCEEEEEe--CCEEEEEEcCCCCCCCEEEEE
Q psy16852 16 VVSHQEQPALFTCKVEG-HPLPTMTWQKDGTE-----L--------HATEHYLITTV--ESVSTLEIINPTKEDIGVYTC 79 (579)
Q Consensus 16 ~~v~~G~~~~l~C~~~~-~~~~~v~W~~~g~~-----~--------~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C 79 (579)
+.+.+|++|+|.|.... .....+.|||.... + ....++..... .+...|+|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 46899999999999864 23457999985421 1 11233433222 356899999999999999999
Q ss_pred EEEcC
Q psy16852 80 KATNI 84 (579)
Q Consensus 80 ~~~~~ 84 (579)
.+...
T Consensus 82 ~~~~~ 86 (98)
T cd05716 82 GVGDD 86 (98)
T ss_pred EcccC
Confidence 98754
No 299
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.34 E-value=4.5e-06 Score=64.95 Aligned_cols=76 Identities=22% Similarity=0.253 Sum_probs=50.5
Q ss_pred CCceEEccCCcEEEEEEEEeec----CCeEEEEECCE------Ecc----------CCC----CceEEEcCCCCeEEEEE
Q psy16852 112 LKPVIAEAQSPATLKATVTGRP----TPSICWYRGKE------EIL----------PDN----GHTMEFNPTTGECVLSI 167 (579)
Q Consensus 112 ~~~~~~~~g~~~~l~C~~~~~p----~~~i~W~~~~~------~~~----------~~~----~~~~~~~~~~~~~~l~i 167 (579)
+..+.+.+|+.++|.|.+.... ...+.|++... .+. ... +..+..+...+..+|+|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 4556788999999999986432 25799987321 110 001 11112223345688999
Q ss_pred CcCCCCCCeEEEEEEEcCCc
Q psy16852 168 SEATPQDEAVYSVKAVNTFG 187 (579)
Q Consensus 168 ~~~~~~d~G~Y~C~~~~~~~ 187 (579)
.+++.+|+|.|.|.+.+...
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eeCCcccCEEEEEEEEeCCC
Confidence 99999999999999987644
No 300
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.33 E-value=5.8e-06 Score=59.44 Aligned_cols=62 Identities=21% Similarity=0.366 Sum_probs=44.2
Q ss_pred EEEEEEEEee-CCCeeEEEECCEEecCCCCEEEEEeCC------EEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852 24 ALFTCKVEGH-PLPTMTWQKDGTELHATEHYLITTVES------VSTLEIINPTKEDIGVYTCKATNIGG 86 (579)
Q Consensus 24 ~~l~C~~~~~-~~~~v~W~~~g~~~~~~~~~~~~~~~~------~~~L~i~~~~~~d~G~Y~C~~~~~~g 86 (579)
++|+|.+.+. |.+.|+|+++|+.+..... ....... .+.|.|.....+|...|+|+|.+...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 6899999774 8889999999998865432 2222221 24566656667778899999998754
No 301
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.32 E-value=2.3e-06 Score=64.85 Aligned_cols=66 Identities=18% Similarity=0.278 Sum_probs=47.0
Q ss_pred eeeCCCCEEEEEEEEeeCCCeeEEEECCEE-------e---cC------------CCCEEEEEeCCEEEEEEcCCCCCCC
Q psy16852 17 VSHQEQPALFTCKVEGHPLPTMTWQKDGTE-------L---HA------------TEHYLITTVESVSTLEIINPTKEDI 74 (579)
Q Consensus 17 ~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~-------~---~~------------~~~~~~~~~~~~~~L~i~~~~~~d~ 74 (579)
.+++|++|+|.|.........+.|||.... + .. ..++..........|+|.+++.+|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 478999999999986544457999984321 1 10 1223333344667899999999999
Q ss_pred EEEEEEEE
Q psy16852 75 GVYTCKAT 82 (579)
Q Consensus 75 G~Y~C~~~ 82 (579)
|.|.|.+.
T Consensus 82 gtY~Ca~~ 89 (104)
T cd05720 82 GYYFCSVA 89 (104)
T ss_pred EEEEEEEc
Confidence 99999875
No 302
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.30 E-value=6.7e-06 Score=60.37 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=33.1
Q ss_pred CCeeEEEEeecccccceeEEEEE-EeCCeeEEEEEEEEE
Q psy16852 495 GNRSVLLISKITRDQIGDVTCRA-ENVAGSVTCTATLSL 532 (579)
Q Consensus 495 ~~~~~l~i~~~~~~d~G~Y~C~a-~n~~g~~~~~~~l~v 532 (579)
...+.|.|.+++.+|+|.|+|.+ ....|+..++..|+|
T Consensus 57 ~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 57 LLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred CCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence 34577999999999999999996 667999999999986
No 303
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.30 E-value=6.4e-06 Score=59.05 Aligned_cols=69 Identities=19% Similarity=0.342 Sum_probs=46.9
Q ss_pred eEEEEEEEe-eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEe
Q psy16852 425 ATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS 503 (579)
Q Consensus 425 ~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~ 503 (579)
++|+|.+.| +|...++|+++|..+....... ......|.|+- .+.|.+.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~----------------~~~~~~~t~~~--------------~s~L~~~ 51 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLK----------------EEDANRKTFTV--------------SSTLDFR 51 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeE----------------eeCCCCCEEEE--------------EEEEEEE
Confidence 689999987 6777999999999975322111 11222344433 3348887
Q ss_pred ecccccceeEEEEEEeCCee
Q psy16852 504 KITRDQIGDVTCRAENVAGS 523 (579)
Q Consensus 504 ~~~~~d~G~Y~C~a~n~~g~ 523 (579)
.-..+|...|+|+|.|..-.
T Consensus 52 ~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 52 VDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred cccccCCCEEEEEEechhcC
Confidence 77777888999999887543
No 304
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.29 E-value=6.8e-06 Score=63.76 Aligned_cols=73 Identities=22% Similarity=0.351 Sum_probs=51.3
Q ss_pred cccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--E-E--e---c-----------CCCCEEEEEeC--CEEEEEEc
Q psy16852 11 EKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--T-E--L---H-----------ATEHYLITTVE--SVSTLEII 67 (579)
Q Consensus 11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~-~--~---~-----------~~~~~~~~~~~--~~~~L~i~ 67 (579)
..|..+.+.+|++|+|.|...... ...+.|||-. . + + . ...++...... ....|+|.
T Consensus 2 ~~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~ 81 (117)
T cd04981 2 VESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLN 81 (117)
T ss_pred ccCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEEC
Confidence 357888999999999999875432 3469999822 1 1 1 0 01344444333 34679999
Q ss_pred CCCCCCCEEEEEEEEc
Q psy16852 68 NPTKEDIGVYTCKATN 83 (579)
Q Consensus 68 ~~~~~d~G~Y~C~~~~ 83 (579)
+++.+|+|.|.|.+..
T Consensus 82 ~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 82 SLTPEDTAVYYCARGL 97 (117)
T ss_pred CCCHHHCEEEEEEEEc
Confidence 9999999999998864
No 305
>PHA03270 envelope glycoprotein C; Provisional
Probab=98.28 E-value=0.00017 Score=66.04 Aligned_cols=172 Identities=15% Similarity=0.134 Sum_probs=96.6
Q ss_pred EEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC--CeEE
Q psy16852 62 STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT--PSIC 138 (579)
Q Consensus 62 ~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--~~i~ 138 (579)
..|.|.+++...+|.|+=...+..+.......++|..- .+|.+...+. -+.+|+...-.|.+..+ |+ ..+.
T Consensus 182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~y----r~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lr 255 (466)
T PHA03270 182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMF----RRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFR 255 (466)
T ss_pred ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEe----cCCcccccCC--ccccCCCceEEEEeeeecCCCceEEE
Confidence 45999999999999999998776664444334444322 2444444333 35689999999998654 43 5999
Q ss_pred EEECCEEccCCCCc-eEEEcCCCC---eEEEEECcCCCC-CCeEEEEEEEcCCcee-EEEEEEEEeeccccCCCCccCCC
Q psy16852 139 WYRGKEEILPDNGH-TMEFNPTTG---ECVLSISEATPQ-DEAVYSVKAVNTFGRA-ECRANLVLRKATTIDKPRVLEAP 212 (579)
Q Consensus 139 W~~~~~~~~~~~~~-~~~~~~~~~---~~~l~i~~~~~~-d~G~Y~C~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~p 212 (579)
||.|+..+...... .......++ .++|.+...... .-=..+|.+.-..+.. .....-.. .+.++.+|
T Consensus 256 Wf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~-------~P~VY~~P 328 (466)
T PHA03270 256 WFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATG-------APTVLPRP 328 (466)
T ss_pred EEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccc-------cCccccCC
Confidence 99999987532221 111111222 234444333221 1127899986554432 22222221 12344555
Q ss_pred eEeccCCceeeCCCCeEEEEEEEEccCC-CeEEEEECCEEecc
Q psy16852 213 TIVRPLQALLVPKDSTVTLEAEYTGTPT-PEVKWFKNGKEIVS 254 (579)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~v~W~~~~~~i~~ 254 (579)
.+.. .+..|. ..|.+.--|. ..+.|+.++.....
T Consensus 329 ~Isv-----~F~dG~---AVCtA~CVPegV~l~W~V~D~~~pa 363 (466)
T PHA03270 329 TIEM-----EFGGDE---AVCTAACVPEGVTLAWLLGADPAPA 363 (466)
T ss_pred eEEE-----EEeCCE---EEEeccccCCCCEEEEEecCCCCCC
Confidence 5442 233333 3455544333 38999887755433
No 306
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.26 E-value=1.8e-05 Score=60.03 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=33.7
Q ss_pred CeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 496 NRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 496 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
....|.|.+++.+|+|.|+|.+..........++|+|.
T Consensus 70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence 46789999999999999999999977778888888875
No 307
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.25 E-value=5.9e-06 Score=60.81 Aligned_cols=74 Identities=16% Similarity=0.208 Sum_probs=49.3
Q ss_pred eEEccCCcEEEEEEEEe-ecCCe--EEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852 115 VIAEAQSPATLKATVTG-RPTPS--ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGR 188 (579)
Q Consensus 115 ~~~~~g~~~~l~C~~~~-~p~~~--i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 188 (579)
..+.+|+.++|.|.+.+ .|.+. |.||+++..+.................+|.+...+.+|.-.|+|+|.+..+.
T Consensus 11 ~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 11 SWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP 87 (100)
T ss_pred CcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence 34578999999999965 66665 7999999988543211111112223457777666555666999999876543
No 308
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.24 E-value=6.5e-06 Score=60.94 Aligned_cols=75 Identities=23% Similarity=0.384 Sum_probs=46.8
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEee-CCC-eeEEEECCEEecCCCCE-EEEEeCC-----EEEEEEcCCCCCCCEEE
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGH-PLP-TMTWQKDGTELHATEHY-LITTVES-----VSTLEIINPTKEDIGVY 77 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~-~~~-~v~W~~~g~~~~~~~~~-~~~~~~~-----~~~L~i~~~~~~d~G~Y 77 (579)
||.+...+.... |+.++|.|.+.|. |.. .++|+++|..+...... .....++ .+.|.|. .+|.+.|
T Consensus 2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~---~~~~~~y 75 (93)
T cd07698 2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVP---PEDKARY 75 (93)
T ss_pred CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEEC---CCCCCEE
Confidence 676666555443 7899999999995 543 89999999643322111 1111111 1334443 4488999
Q ss_pred EEEEEcCCe
Q psy16852 78 TCKATNIGG 86 (579)
Q Consensus 78 ~C~~~~~~g 86 (579)
+|++.+...
T Consensus 76 tC~V~H~~~ 84 (93)
T cd07698 76 SCRVEHSGL 84 (93)
T ss_pred EEEEEeCCC
Confidence 999987643
No 309
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.24 E-value=6.2e-06 Score=62.53 Aligned_cols=86 Identities=17% Similarity=0.186 Sum_probs=50.2
Q ss_pred eecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEE-E-eecceeeeeeeCC
Q psy16852 419 AEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV-K-ASSTETKIMTDGN 496 (579)
Q Consensus 419 ~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c-~-~~~~~~~~~~~~~ 496 (579)
+.+|+.++|.|.+.......+.|++....- ...... .+.+... .+...+ . ....++.+..+..
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~--~~~~~~---------l~~~~~~----~~~~~~~~~~~~~rf~~~~~~~ 67 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGS--APQPTF---------LVYLSGS----SKITWDEEELSSKRFSGSRSSN 67 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCC--CCCCEE---------EEEEeCC----CCeeeccccCCCceEEEEecCC
Confidence 678999999999865545579999954110 011110 0111110 000000 0 0122333444557
Q ss_pred eeEEEEeecccccceeEEEEEEe
Q psy16852 497 RSVLLISKITRDQIGDVTCRAEN 519 (579)
Q Consensus 497 ~~~l~i~~~~~~d~G~Y~C~a~n 519 (579)
...|+|.+++.+|+|.|.|.+.+
T Consensus 68 ~~~L~I~~~~~sDsgtY~Ca~~~ 90 (104)
T cd05720 68 SFVLTLKNFQKENEGYYFCSVAS 90 (104)
T ss_pred EEEEEECCCCHHHCEEEEEEEcc
Confidence 77899999999999999998864
No 310
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.23 E-value=7.8e-06 Score=58.62 Aligned_cols=63 Identities=21% Similarity=0.343 Sum_probs=43.7
Q ss_pred EEEEEEEEe-eCCCeeEEEECCEEecCCCCEEEEEeC-----CEEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852 24 ALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVE-----SVSTLEIINPTKEDIGVYTCKATNIGG 86 (579)
Q Consensus 24 ~~l~C~~~~-~~~~~v~W~~~g~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~~~~g 86 (579)
++|+|.+.| +|.+.++|+|||..+............ ..+.|.+..-..+|...|+|+|.+..-
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence 689999977 577899999999997543322111111 135677766667778899999987643
No 311
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.22 E-value=9.4e-06 Score=60.77 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=51.0
Q ss_pred eeecCCCeEEEEEEEe-eCC-CeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeC
Q psy16852 418 IAEAQSPATLKATVTG-RPT-PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDG 495 (579)
Q Consensus 418 ~~~~g~~~~l~C~~~g-~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~ 495 (579)
....++.++|.|.+.| +|. ..|.|+++|..+..+.. .........|.|+....
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~---------------~~~~~~~~dgty~~~s~---------- 67 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQ---------------TSTTEQQSDNTYSLSSY---------- 67 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEe---------------ccccEECCCCCEEEEEE----------
Confidence 3446788999999998 453 38999999998843210 11122233566655433
Q ss_pred CeeEEEEeecccccceeEEEEEEeCCe
Q psy16852 496 NRSVLLISKITRDQIGDVTCRAENVAG 522 (579)
Q Consensus 496 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g 522 (579)
|.+..-..++...|+|.+.....
T Consensus 68 ----L~v~~~~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 68 ----LTLTKSDWNKHKVYTCEVTHEGL 90 (100)
T ss_pred ----EEEcHHHhCCCCeEEEEEEecCC
Confidence 77777776677899999987644
No 312
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.22 E-value=1e-05 Score=63.08 Aligned_cols=74 Identities=19% Similarity=0.266 Sum_probs=52.3
Q ss_pred CCCceEEccCCcEEEEEEEEee-cCCeEEEEECCE--E---cc---------CCCCceEEEcCCCCeEEEEECcCCCCCC
Q psy16852 111 PLKPVIAEAQSPATLKATVTGR-PTPSICWYRGKE--E---IL---------PDNGHTMEFNPTTGECVLSISEATPQDE 175 (579)
Q Consensus 111 ~~~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~~~--~---~~---------~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 175 (579)
.+..+.+.+|++++|.|.+... ....+.||+... . +. ...++.+..+...+..+|.|.+++.+|+
T Consensus 5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Ds 84 (116)
T cd07706 5 AQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDS 84 (116)
T ss_pred eCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHC
Confidence 3456778899999999998643 456899998421 1 10 1123333333445678999999999999
Q ss_pred eEEEEEEEc
Q psy16852 176 AVYSVKAVN 184 (579)
Q Consensus 176 G~Y~C~~~~ 184 (579)
|.|.|.+..
T Consensus 85 g~Y~C~~~~ 93 (116)
T cd07706 85 AKYFCALST 93 (116)
T ss_pred EEEEEEEEC
Confidence 999999975
No 313
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.21 E-value=8.3e-06 Score=61.37 Aligned_cols=72 Identities=13% Similarity=0.172 Sum_probs=51.7
Q ss_pred eEEccCCcEEEEEEEEe-ecCCeEEEEECCEE-----c--------cCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEE
Q psy16852 115 VIAEAQSPATLKATVTG-RPTPSICWYRGKEE-----I--------LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 180 (579)
Q Consensus 115 ~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~-----~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 180 (579)
+.+.+|++++|.|.... .....+.||+.... + ....+..+..+...+...|.|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 35678999999999754 34568999986421 1 0112334433455677899999999999999999
Q ss_pred EEEcCC
Q psy16852 181 KAVNTF 186 (579)
Q Consensus 181 ~~~~~~ 186 (579)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 987653
No 314
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.20 E-value=1.2e-05 Score=61.47 Aligned_cols=88 Identities=19% Similarity=0.327 Sum_probs=50.1
Q ss_pred eeecCCCeEEEEEEEeeC-CCeEEEeeCCEEcCC-CCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeee--ee
Q psy16852 418 IAEAQSPATLKATVTGRP-TPSICWYRGKEEILP-DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKI--MT 493 (579)
Q Consensus 418 ~~~~g~~~~l~C~~~g~p-~~~v~W~~~~~~l~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~--~~ 493 (579)
.+.+|++++|.|.+.+.. ...+.|++....-.+ ...+.+.. . ..+.-.|.-...+.++.+ ..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~-----------~---~~~~~~~~~~~~~~rf~~~~~~ 67 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALW-----------S---PLGGATYGEEVSQEKFSIRVTS 67 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEE-----------c---CCCCeEEccccccCcEEEEEEC
Confidence 477899999999987643 448999995321100 00111110 0 000011111111222322 33
Q ss_pred eCCeeEEEEeecccccceeEEEEEEe
Q psy16852 494 DGNRSVLLISKITRDQIGDVTCRAEN 519 (579)
Q Consensus 494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n 519 (579)
+.....|+|.+++.+|+|.|.|...+
T Consensus 68 ~~~~~~L~I~~~~~~Dsg~YyCa~~~ 93 (107)
T cd07700 68 DSSRYRLHINRVKPEDSGTYFCMTVG 93 (107)
T ss_pred CCCEEEEEECCCCHHHCEEEEEeEcC
Confidence 45567899999999999999999864
No 315
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.20 E-value=2.3e-05 Score=55.28 Aligned_cols=69 Identities=23% Similarity=0.393 Sum_probs=44.9
Q ss_pred CeEEEEEEEee-CC-CeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEE
Q psy16852 424 PATLKATVTGR-PT-PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL 501 (579)
Q Consensus 424 ~~~l~C~~~g~-p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~ 501 (579)
.++|.|.+.|+ |+ ..+.|+++|.++..+.. ...+.+...|.|+.. +.|.
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~---------------~~~~~~~~~gt~~~~--------------s~L~ 51 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVS---------------TTDPLKNSDGTYFLS--------------SYLT 51 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEE---------------ECceEECCCCCEEEE--------------EEEE
Confidence 36899999985 55 48999999987532210 111222344555433 3377
Q ss_pred EeecccccceeEEEEEEeCC
Q psy16852 502 ISKITRDQIGDVTCRAENVA 521 (579)
Q Consensus 502 i~~~~~~d~G~Y~C~a~n~~ 521 (579)
+.....++...|+|.|.+..
T Consensus 52 v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 52 VSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred EccccCCCCCEEEEEEEEcC
Confidence 76667777889999997753
No 316
>PHA03270 envelope glycoprotein C; Provisional
Probab=98.16 E-value=0.0034 Score=57.86 Aligned_cols=167 Identities=13% Similarity=0.175 Sum_probs=94.7
Q ss_pred eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCC
Q psy16852 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPT 240 (579)
Q Consensus 162 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~ 240 (579)
...|.|..++...+|.|+=...+..+.......++|. .+.+|.+...+. .+.+|+.+.-.|.+.. +|+
T Consensus 181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~---------~yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp 249 (466)
T PHA03270 181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVR---------MFRRPSLSIRPH--AVLEGEPFGATCVAANYYPG 249 (466)
T ss_pred cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEE---------EecCCcccccCC--ccccCCCceEEEEeeeecCC
Confidence 3569999999999999999877766544433444443 224555443332 3678999999999876 454
Q ss_pred C--eEEEEECCEEeccCc-eE----Ee----CCeEEEEEcccCCC-CCeEEEEEEEcCCee---eEEEEEEEEEecccee
Q psy16852 241 P--EVKWFKNGKEIVSKD-IE----TK----DNVTKLVIKQTTKK-TTGKYEIRVVNEAGE---ARTSGSVTITVAEAET 305 (579)
Q Consensus 241 ~--~v~W~~~~~~i~~~~-~~----~~----~~~~~l~i~~~~~~-d~G~y~C~a~n~~g~---~~~~~~~~v~~~~~~~ 305 (579)
. .++|+.||.++.... .. .. ...+++++...... ..=..+|.+.-.... ...+....-.+...+.
T Consensus 250 ~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~ 329 (466)
T PHA03270 250 DRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPT 329 (466)
T ss_pred CceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCe
Confidence 4 799999999885422 11 11 12233443332211 123689998532222 2223333333444444
Q ss_pred eeeeeeeeccccCceeeeecCeeEEEeeeCC-CeEEEEECCEEccCC
Q psy16852 306 VMMDVRVESHPTASFQWFIHSEPVVVTGKPT-PLVTWSHDGTPMKEG 351 (579)
Q Consensus 306 ~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~-~~i~W~~~~~~~~~~ 351 (579)
+.+... ....-|.+..-|. ..+.|.-++......
T Consensus 330 Isv~F~------------dG~AVCtA~CVPegV~l~W~V~D~~~pa~ 364 (466)
T PHA03270 330 IEMEFG------------GDEAVCTAACVPEGVTLAWLLGADPAPAE 364 (466)
T ss_pred EEEEEe------------CCEEEEeccccCCCCEEEEEecCCCCCCc
Confidence 443321 1112355555554 478998777665443
No 317
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.14 E-value=2.6e-05 Score=63.23 Aligned_cols=86 Identities=12% Similarity=0.163 Sum_probs=59.1
Q ss_pred ceEEccCCcEEEEEEEE-eecCCeEEEEECCEEcc----------CCCCceEE-EcCCCCeEEEEECcCCCCCCeEEEEE
Q psy16852 114 PVIAEAQSPATLKATVT-GRPTPSICWYRGKEEIL----------PDNGHTME-FNPTTGECVLSISEATPQDEAVYSVK 181 (579)
Q Consensus 114 ~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~----------~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~ 181 (579)
.+.+.+|++++|.|... +...+++.|+|.++.+. .+...++. .........|.|.+++.+|+|.|+|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 45678999999999974 55568999999643221 11112333 23334457899999999999999999
Q ss_pred EEc-CCc-eeEEEEEEEEee
Q psy16852 182 AVN-TFG-RAECRANLVLRK 199 (579)
Q Consensus 182 ~~~-~~~-~~~~~~~~~v~~ 199 (579)
... +.| .......+.|..
T Consensus 104 F~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred EEecCCCCCceeEEEEEEEc
Confidence 853 345 556666676653
No 318
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.10 E-value=3.9e-05 Score=56.43 Aligned_cols=73 Identities=18% Similarity=0.301 Sum_probs=46.4
Q ss_pred CCEEEEEEEEee-CCCeeEEEECCE----Ee-----------cCCCCEEEEEe---CCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 22 QPALFTCKVEGH-PLPTMTWQKDGT----EL-----------HATEHYLITTV---ESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 22 ~~~~l~C~~~~~-~~~~v~W~~~g~----~~-----------~~~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
+.++|.|..... ...++.|.|... .+ ......++... ....+|+|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 578999998532 234789988421 11 11111122222 235899999999999999999996
Q ss_pred c-CCeeeEEEEEE
Q psy16852 83 N-IGGVATCSANL 94 (579)
Q Consensus 83 ~-~~g~~~~~~~~ 94 (579)
. ..|.....+.+
T Consensus 81 t~P~g~~~~~i~~ 93 (96)
T cd05889 81 TYPQGSWEKVIEV 93 (96)
T ss_pred eCCCCCeEEEEEE
Confidence 5 35666655443
No 319
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.10 E-value=3.4e-05 Score=54.13 Aligned_cols=75 Identities=12% Similarity=0.160 Sum_probs=48.5
Q ss_pred eeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeC
Q psy16852 418 IAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDG 495 (579)
Q Consensus 418 ~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~ 495 (579)
.+..|++++|+|.....+.| +++|+-.+....... ..
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~-----------------------------------------~~ 48 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQIL-----------------------------------------NQ 48 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccceec-----------------------------------------cC
Confidence 46789999999999654444 999987654321100 01
Q ss_pred CeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 496 NRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 496 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
...+|.+..+...|+|..+|.++-..-+....+.|.|.
T Consensus 49 ~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~Vl 86 (88)
T cd07694 49 DKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKVL 86 (88)
T ss_pred CccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEEE
Confidence 12237777777777888888886544455556666553
No 320
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.10 E-value=2.5e-05 Score=58.56 Aligned_cols=77 Identities=18% Similarity=0.175 Sum_probs=47.8
Q ss_pred eecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCC-CceeEEEEeecceeeeeeeC
Q psy16852 419 AEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQ-DEAVYSVKASSTETKIMTDG 495 (579)
Q Consensus 419 ~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~g~y~c~~~~~~~~~~~~~ 495 (579)
+..|+.++|.|.+.|+.+. .+.|+++|..+....... ....... ..|.|+....
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~-------------~~~~~~~~~dgTy~~~s~---------- 69 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVT-------------TAPMQEPGGNESYFLYSK---------- 69 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccc-------------cCcccccCCCCeEEEEEE----------
Confidence 4457889999999995443 789999999875432111 0011111 1366654433
Q ss_pred CeeEEEEeecccccceeEEEEEEeCCe
Q psy16852 496 NRSVLLISKITRDQIGDVTCRAENVAG 522 (579)
Q Consensus 496 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g 522 (579)
|.+..-...+...|+|.+.....
T Consensus 70 ----L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 70 ----LTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred ----EEEcHHHhcCCCcEEEEeEeCCC
Confidence 77755555566789999987643
No 321
>PHA03271 envelope glycoprotein C; Provisional
Probab=98.10 E-value=0.0025 Score=58.18 Aligned_cols=174 Identities=15% Similarity=0.146 Sum_probs=96.1
Q ss_pred EEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEE
Q psy16852 154 MEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEA 233 (579)
Q Consensus 154 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C 233 (579)
+..........|.|.++...++|.|+-...+..........+.+... +.+|.+...+. .+.+|++..-.|
T Consensus 198 i~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~--------~RPPsVsV~a~--PVL~Ge~YkAtC 267 (490)
T PHA03271 198 IWINKTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVC--------QRPASVDVLAP--PVLSGENYKASC 267 (490)
T ss_pred EeeccccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEE--------ecCCCccccCC--ccccCCCceEEE
Confidence 33334445578999999999999876666655444433333333322 23444433322 366899999999
Q ss_pred EEEc-cCCC--eEEEEECCEEeccCce---E---Ee-----CCeEEEEEcccCCCCCeEEEEEEEcCCeee--EEEEEEE
Q psy16852 234 EYTG-TPTP--EVKWFKNGKEIVSKDI---E---TK-----DNVTKLVIKQTTKKTTGKYEIRVVNEAGEA--RTSGSVT 297 (579)
Q Consensus 234 ~~~~-~p~~--~v~W~~~~~~i~~~~~---~---~~-----~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~--~~~~~~~ 297 (579)
.+.. +|+. .++|+.||.++..... . .. ...+++.+.+...+..=..+|.+.-..+.. ..++...
T Consensus 268 ~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaat 347 (490)
T PHA03271 268 IVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAI 347 (490)
T ss_pred EeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccC
Confidence 9886 4544 7999999988755431 0 00 112344444433333447899996333222 2233333
Q ss_pred EEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCC-CeEEEEECCEEcc
Q psy16852 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPT-PLVTWSHDGTPMK 349 (579)
Q Consensus 298 v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~-~~i~W~~~~~~~~ 349 (579)
..+...+.+.+.. .....-|.+..-|. ..+.|.-++.+..
T Consensus 348 P~VY~~P~ISv~F------------edG~AVCtA~CVP~gV~lrWlVgD~p~p 388 (490)
T PHA03271 348 PTVYHHPRISLAF------------KDGYAICTIECVPSGITVRWLVHDEPQP 388 (490)
T ss_pred CccccCCeEEEEE------------eCCEEEEeccccCCCcEEEEEecCCCCC
Confidence 3344444444322 11122355555543 4789987776543
No 322
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.09 E-value=3.1e-05 Score=57.23 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=49.9
Q ss_pred eeeecCCCeEEEEEEEee--CCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852 417 VIAEAQSPATLKATVTGR--PTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT 493 (579)
Q Consensus 417 ~~~~~g~~~~l~C~~~g~--p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 493 (579)
..+..|+.++|+|.+.|+ |.. .++|++++...... ......+...|.|.....
T Consensus 9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~----------------~~~~~~~~~dgty~~~s~-------- 64 (96)
T cd07696 9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKA----------------SIQPPESHNNATLSVTST-------- 64 (96)
T ss_pred HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeE----------------EecccccCCCCCEEEEEE--------
Confidence 346668999999999998 443 88999987533110 011223445566655544
Q ss_pred eCCeeEEEEeecccccceeEEEEEEeCCee
Q psy16852 494 DGNRSVLLISKITRDQIGDVTCRAENVAGS 523 (579)
Q Consensus 494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 523 (579)
|.+..-+.++.-.|+|.+......
T Consensus 65 ------l~v~~~~w~~g~~ysC~V~H~~l~ 88 (96)
T cd07696 65 ------LNVSTDDWISGDTFQCKVTHPDLP 88 (96)
T ss_pred ------EEeCHHHccCCCcEEEEEECCCCC
Confidence 777766655566899999876543
No 323
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.09 E-value=1.5e-05 Score=59.01 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=45.8
Q ss_pred eeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc---eEEeCCeEEEEEcccCCCCCeEEEEEEE
Q psy16852 222 LVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVV 284 (579)
Q Consensus 222 ~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~---~~~~~~~~~l~i~~~~~~d~G~y~C~a~ 284 (579)
.+..|++++|.|.... ....+.|+|+|....... .........+.|..++.+|+|.|+|...
T Consensus 11 vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 11 VVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred ccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 4778999999998754 455899999886532211 0112335678999999999999999975
No 324
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.08 E-value=1.5e-05 Score=59.62 Aligned_cols=80 Identities=21% Similarity=0.359 Sum_probs=50.9
Q ss_pred CCccccc-cCceeeeCCCCEEEEEEEEee-C-CCeeEEEECCEEecCCCCEE-EEEe-CC----EEEEEEcCCCCCCCEE
Q psy16852 6 APRFIEK-IQPVVSHQEQPALFTCKVEGH-P-LPTMTWQKDGTELHATEHYL-ITTV-ES----VSTLEIINPTKEDIGV 76 (579)
Q Consensus 6 ~p~~~~~-p~~~~v~~G~~~~l~C~~~~~-~-~~~v~W~~~g~~~~~~~~~~-~~~~-~~----~~~L~i~~~~~~d~G~ 76 (579)
||.+... |......+++.++|.|.+.|. | ...++|++||..+..+.... .... ++ .+.|.+..-..++...
T Consensus 1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ 80 (100)
T cd07699 1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKV 80 (100)
T ss_pred CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCe
Confidence 4554443 444556678999999999884 4 35899999999885321110 0111 11 2456665555556789
Q ss_pred EEEEEEcCC
Q psy16852 77 YTCKATNIG 85 (579)
Q Consensus 77 Y~C~~~~~~ 85 (579)
|+|++.+..
T Consensus 81 ~sC~V~H~~ 89 (100)
T cd07699 81 YTCEVTHEG 89 (100)
T ss_pred EEEEEEecC
Confidence 999998764
No 325
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.08 E-value=5.8e-05 Score=57.41 Aligned_cols=70 Identities=30% Similarity=0.446 Sum_probs=45.4
Q ss_pred ceeeeCCCCEEEEEEEEee-CC-CeeEEEECCEEecCCCCEEEEEeCC------EEEEEEcCCCCCCCE-EEEEEEEcCC
Q psy16852 15 PVVSHQEQPALFTCKVEGH-PL-PTMTWQKDGTELHATEHYLITTVES------VSTLEIINPTKEDIG-VYTCKATNIG 85 (579)
Q Consensus 15 ~~~v~~G~~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~~~~~~~~~~~------~~~L~i~~~~~~d~G-~Y~C~~~~~~ 85 (579)
......|+.++|.|.+.+. |. ..++|+|||+.+..... .....++ .+.|.+.. ...|.| .|+|++.+..
T Consensus 15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 3445678999999999874 53 58999999999864321 1111111 24455554 444444 5999999865
Q ss_pred e
Q psy16852 86 G 86 (579)
Q Consensus 86 g 86 (579)
.
T Consensus 93 l 93 (111)
T cd05772 93 L 93 (111)
T ss_pred C
Confidence 3
No 326
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.08 E-value=5.1e-05 Score=55.79 Aligned_cols=75 Identities=13% Similarity=0.206 Sum_probs=46.9
Q ss_pred cCCCeEEEEEEEe-eCC-CeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCee
Q psy16852 421 AQSPATLKATVTG-RPT-PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRS 498 (579)
Q Consensus 421 ~g~~~~l~C~~~g-~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~ 498 (579)
.++.++|.|.+.| +|. ..|.|+++|..+..... .-...... .|.|... +
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~--------------~s~~~~~~-~~Ty~~~--------------S 63 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAA--------------STAPQKEE-GSTFSTT--------------S 63 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCcee--------------ecccEECC-CCcEEEE--------------E
Confidence 4567999999998 455 38999999988632210 00111112 2355433 3
Q ss_pred EEEEeecccccceeEEEEEEeCCeeE
Q psy16852 499 VLLISKITRDQIGDVTCRAENVAGSV 524 (579)
Q Consensus 499 ~l~i~~~~~~d~G~Y~C~a~n~~g~~ 524 (579)
.|.+..-...+...|+|.+.+.....
T Consensus 64 ~L~v~~~~w~~~~~ytC~V~H~~~~~ 89 (94)
T cd05847 64 ELNVTQEDWKSGKTYTCKVTHQGTTF 89 (94)
T ss_pred EEEEchHHhcCCCeEEEEEEECCeee
Confidence 37777666666788999998875543
No 327
>PHA03269 envelope glycoprotein C; Provisional
Probab=98.07 E-value=0.00062 Score=63.35 Aligned_cols=203 Identities=15% Similarity=0.126 Sum_probs=108.1
Q ss_pred CCeEEEEECcCCCCCCeEEEEEEEcC-CceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-
Q psy16852 160 TGECVLSISEATPQDEAVYSVKAVNT-FGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG- 237 (579)
Q Consensus 160 ~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~- 237 (579)
.+...|.|..++..++|.|+=++.+. .+.......++|. ...+|.+...+. .+.+|+.+.-.|.+..
T Consensus 286 p~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~---------~yr~PsVsV~p~--PVL~Ge~YkAtC~vA~Y 354 (566)
T PHA03269 286 TSDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVM---------SYKRPNITVIGD--PVLLGNPYAAYCKVNKY 354 (566)
T ss_pred CCccceEEeecccccCceEEEEEecCCCCceeeeeEEEEE---------EecCCCccccCC--ccccCCCceEEEEeeee
Confidence 34567999999999999998665432 2333333444443 224554433332 3678999999999886
Q ss_pred cCCC--eEEEEECCEEeccCc----eEE-----eCCeEEEEEcccCCCC--CeEEEEEEEcCCeee-EE--EEEEEEEec
Q psy16852 238 TPTP--EVKWFKNGKEIVSKD----IET-----KDNVTKLVIKQTTKKT--TGKYEIRVVNEAGEA-RT--SGSVTITVA 301 (579)
Q Consensus 238 ~p~~--~v~W~~~~~~i~~~~----~~~-----~~~~~~l~i~~~~~~d--~G~y~C~a~n~~g~~-~~--~~~~~v~~~ 301 (579)
+|+. .++|++||.++.... ... ....++|++......| .-..+|.+.-..+.. .. +....-.|.
T Consensus 355 YPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY 434 (566)
T PHA03269 355 YPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVY 434 (566)
T ss_pred cCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccc
Confidence 4544 789999998887432 111 1122444443221111 345699985322222 11 233333344
Q ss_pred cceeeeeeeeeeccccCceeeeecCeeEEEeeeCC--CeEEEEECCEEccCCCeEEEEECCCCeEEEEEcc---cCCCC-
Q psy16852 302 EAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPT--PLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISE---VFPEN- 375 (579)
Q Consensus 302 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~--~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~---~~~~d- 375 (579)
..+.+.+.. .....-|.+..-|. ..+.|.-++...........-.-.+......+.. +...|
T Consensus 435 ~~PtISm~F------------edG~AVCtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~C~ehPGLVNLRS~~pLS~~dg 502 (566)
T PHA03269 435 PFPNVSIEI------------IDGHIVCLAKCVPRGVVHFNWWINDIPIEHENSEILGVCDNNKRFVNLQSSCDTSELDG 502 (566)
T ss_pred cCCeEEEEE------------eCCEEEEecccccCCCceEEEEecCCCCCCccceeeccCCCCCCceeecccccccccCC
Confidence 444444332 11222366666665 3799988776643332211110011111344444 33333
Q ss_pred CEEEEEEEEc
Q psy16852 376 AGLYSCTAVN 385 (579)
Q Consensus 376 ~G~Y~C~a~n 385 (579)
--.|+|.+..
T Consensus 503 pveYTCrL~G 512 (566)
T PHA03269 503 PITYSCHLDG 512 (566)
T ss_pred ceeEEEEEee
Confidence 2479999853
No 328
>PHA03273 envelope glycoprotein C; Provisional
Probab=98.06 E-value=0.00059 Score=63.29 Aligned_cols=167 Identities=17% Similarity=0.135 Sum_probs=96.6
Q ss_pred EEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC--CeEE
Q psy16852 62 STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT--PSIC 138 (579)
Q Consensus 62 ~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--~~i~ 138 (579)
..|.|..++..++|.|+=+..+..+.......+.|..- .+|.+...+. -+.+|+...-.|.+..+ |+ ..+.
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~y----r~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~r 271 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTY----NAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLR 271 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEe----cCCcccccCC--ccccCCCceEEEEeeeecCCCceEEE
Confidence 55999999999999998776565555555555555321 2444444333 35689999999998654 43 5999
Q ss_pred EEECCEEccCCCC--ceEEEcCC---CCeEEEEECcCCC-CCCeEEEEEEEcCCceeEEEE-EEEEeeccccCCCCccCC
Q psy16852 139 WYRGKEEILPDNG--HTMEFNPT---TGECVLSISEATP-QDEAVYSVKAVNTFGRAECRA-NLVLRKATTIDKPRVLEA 211 (579)
Q Consensus 139 W~~~~~~~~~~~~--~~~~~~~~---~~~~~l~i~~~~~-~d~G~Y~C~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~ 211 (579)
||.++.++..... ........ ...++|.+..... +..=..+|.+.-..+....+. .-.. .+.++.+
T Consensus 272 Wf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~-------~P~Vy~~ 344 (486)
T PHA03273 272 WYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAG-------TPSVFVA 344 (486)
T ss_pred EEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccc-------cCccccC
Confidence 9999998873222 11221111 1234555555322 333488999875544322211 1111 1234455
Q ss_pred CeEeccCCceeeCCCCeEEEEEEEEccCC--CeEEEEECC
Q psy16852 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPT--PEVKWFKNG 249 (579)
Q Consensus 212 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~~ 249 (579)
|.+.. .+..| ...|.+.--|. ..+.|+.++
T Consensus 345 P~Is~-----~F~~G---~AVCtA~CVP~egV~l~W~v~D 376 (486)
T PHA03273 345 PTVSV-----TVEDG---DAVCTAKCVPSTGVFVSWSVND 376 (486)
T ss_pred CeEEE-----EEeCC---EEEEecccccCCCeeEEEEccC
Confidence 55442 23233 34566665554 589998876
No 329
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.06 E-value=3.9e-05 Score=56.50 Aligned_cols=72 Identities=26% Similarity=0.499 Sum_probs=46.9
Q ss_pred CCCeEEEEEEE-eeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEE
Q psy16852 422 QSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL 500 (579)
Q Consensus 422 g~~~~l~C~~~-g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l 500 (579)
|+.+.|+|.+. |+|+|.+.|+.++..+.. .........+.|.|.. .+.|
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~----------------~~~~~~~~~~~~~~~~--------------~S~l 63 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVA----------------SNTTQSSSPDNGLFTV--------------SSTL 63 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECE----------------EEEEEEEETTTTTEEE--------------EEEE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceee----------------eeeeeeeccCCCcceE--------------EEEE
Confidence 67999999765 689999999999877611 1111122233333322 2447
Q ss_pred EEeecccccceeEEEEEEeCCee
Q psy16852 501 LISKITRDQIGDVTCRAENVAGS 523 (579)
Q Consensus 501 ~i~~~~~~d~G~Y~C~a~n~~g~ 523 (579)
.+..-..++...++|.|.|..-.
T Consensus 64 ~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 64 TLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp EEETTGGGTTEEEEEEEEETTCC
T ss_pred EEEcChHHCCeEEEEEEECCccC
Confidence 77766667788999999987544
No 330
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.05 E-value=3.9e-05 Score=56.49 Aligned_cols=66 Identities=24% Similarity=0.408 Sum_probs=44.0
Q ss_pred CCCEEEEEEE-EeeCCCeeEEEECCEEecCCCCEEEEEeC-----CEEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852 21 EQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLITTVE-----SVSTLEIINPTKEDIGVYTCKATNIGG 86 (579)
Q Consensus 21 G~~~~l~C~~-~~~~~~~v~W~~~g~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~~~~g 86 (579)
|+.+.|+|.+ .++|.+.++|+.++..+............ ..+.|.+..-..++...++|+|.+..-
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence 8899999987 45788999999999877111111111111 125677776666678899999988653
No 331
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.04 E-value=0.00012 Score=55.76 Aligned_cols=76 Identities=16% Similarity=0.339 Sum_probs=47.5
Q ss_pred eeecCCCeEEEEEEEee-CC-CeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeC
Q psy16852 418 IAEAQSPATLKATVTGR-PT-PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDG 495 (579)
Q Consensus 418 ~~~~g~~~~l~C~~~g~-p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~ 495 (579)
....|+.++|.|.+.|+ |. ..++|++||..+..... .. . ...|.|.|....
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~-------------~--p~~d~~ty~~~S----------- 69 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NI-------------T--PEGDSVSYNVTS----------- 69 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ce-------------e--eCCCCCcEEEEE-----------
Confidence 34568889999999984 54 49999999999853211 10 0 012335665433
Q ss_pred CeeEEEEeecccccceeEEEEEEeCCee
Q psy16852 496 NRSVLLISKITRDQIGDVTCRAENVAGS 523 (579)
Q Consensus 496 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 523 (579)
.|.+..-..++.-.|+|.+.+....
T Consensus 70 ---~L~~~~~~~d~~~~ytC~V~H~~l~ 94 (111)
T cd05772 70 ---TVQVKLTEDDVHSQVTCEVQHRTLQ 94 (111)
T ss_pred ---EEEEECccccccCceEEEEEeCCCC
Confidence 3766654444334599999987543
No 332
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=98.02 E-value=5.3e-05 Score=55.59 Aligned_cols=76 Identities=20% Similarity=0.333 Sum_probs=45.6
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEee-CC-CeeEEEECCEEecCCCCEE-EEEeCC-----EEEEEEcCCCCCCCEEE
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGH-PL-PTMTWQKDGTELHATEHYL-ITTVES-----VSTLEIINPTKEDIGVY 77 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~~~~~-~~~~~~-----~~~L~i~~~~~~d~G~Y 77 (579)
||.+..-+.. ....|+..+|.|.+.|+ |. ..++|.+||..+..+.... ....++ .+.|.+. .++...|
T Consensus 1 ~P~V~v~~~~-~~~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~y 76 (94)
T cd05767 1 PPEVTVFSLK-PVELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIY 76 (94)
T ss_pred CCEEEEEeCC-cccCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeE
Confidence 4444433332 13457778999999984 53 4799999999876432111 111111 2345444 3456699
Q ss_pred EEEEEcCC
Q psy16852 78 TCKATNIG 85 (579)
Q Consensus 78 ~C~~~~~~ 85 (579)
+|++.+..
T Consensus 77 tC~V~H~~ 84 (94)
T cd05767 77 SCIVEHWG 84 (94)
T ss_pred EEEEEeCC
Confidence 99998754
No 333
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.01 E-value=6.3e-05 Score=53.00 Aligned_cols=63 Identities=30% Similarity=0.459 Sum_probs=41.9
Q ss_pred CEEEEEEEEee-CC-CeeEEEECCEEecCCCCEE-EEEe-CC----EEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852 23 PALFTCKVEGH-PL-PTMTWQKDGTELHATEHYL-ITTV-ES----VSTLEIINPTKEDIGVYTCKATNIG 85 (579)
Q Consensus 23 ~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~~~~~-~~~~-~~----~~~L~i~~~~~~d~G~Y~C~~~~~~ 85 (579)
.++|.|.+.|. |. ..++|+|||+.+..+.... .... ++ .+.|.|.....++...|+|.+.+..
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 47899999886 44 5899999999754321110 1111 11 3567777667778889999998753
No 334
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.01 E-value=4.6e-05 Score=59.13 Aligned_cols=89 Identities=15% Similarity=0.227 Sum_probs=50.1
Q ss_pred CceeeecCCCeEEEEEEEeeC--CCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852 415 KPVIAEAQSPATLKATVTGRP--TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM 492 (579)
Q Consensus 415 ~~~~~~~g~~~~l~C~~~g~p--~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~ 492 (579)
....+.+|++++|.|...+.. ...+.|++... +....+ .+.+...... .+......+++.+.
T Consensus 5 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~----g~~p~~---------l~~~~~~~~~---~~~~~~~~~rf~~~ 68 (117)
T cd04981 5 GPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAP----GKGLEW---------IGFINPGGGE---TYYADSVKGRFTIT 68 (117)
T ss_pred CCeEEcCCCCEEEEEEEeCCCcccceEEEEEECC----CCCcEE---------EEEEecCCCc---eEeCcccCCcEEEE
Confidence 345688999999999986433 45799999431 111110 0111110000 00000111233343
Q ss_pred eeC--CeeEEEEeecccccceeEEEEEEe
Q psy16852 493 TDG--NRSVLLISKITRDQIGDVTCRAEN 519 (579)
Q Consensus 493 ~~~--~~~~l~i~~~~~~d~G~Y~C~a~n 519 (579)
.+. ....|+|.+++.+|+|.|.|.+..
T Consensus 69 ~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 69 RDTSKSTVYLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred EEccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence 333 345799999999999999998865
No 335
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.00 E-value=6.7e-05 Score=55.21 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=28.7
Q ss_pred CeeEEEEeecccccceeEEEEEEeC-CeeEEEEEEEE
Q psy16852 496 NRSVLLISKITRDQIGDVTCRAENV-AGSVTCTATLS 531 (579)
Q Consensus 496 ~~~~l~i~~~~~~d~G~Y~C~a~n~-~g~~~~~~~l~ 531 (579)
..+.|+|.+++.+|+|.|+|.+..- .|..++.+.|.
T Consensus 58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~~ 94 (96)
T cd05889 58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEVV 94 (96)
T ss_pred CccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEEE
Confidence 4577999999999999999998654 77776666553
No 336
>PHA03273 envelope glycoprotein C; Provisional
Probab=98.00 E-value=0.00068 Score=62.92 Aligned_cols=160 Identities=18% Similarity=0.192 Sum_probs=93.9
Q ss_pred EEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCC
Q psy16852 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTP 241 (579)
Q Consensus 163 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~ 241 (579)
..|.|..++..++|.|+=...+..+.......+.|.. +.+|.+...+. .+.+|+.+.-.|.+.. +|+.
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~---------yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~ 266 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVST---------YNAPLVDLSVH--PSLKGENYRAVCVVASYFPHS 266 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEE---------ecCCcccccCC--ccccCCCceEEEEeeeecCCC
Confidence 5699999999999999877656555444444444431 24555443332 3678999999999876 4544
Q ss_pred --eEEEEECCEEecc-Cc----eE-----EeCCeEEEEEcccCC-CCCeEEEEEEEcCCee-eEE--EEEEEEEecccee
Q psy16852 242 --EVKWFKNGKEIVS-KD----IE-----TKDNVTKLVIKQTTK-KTTGKYEIRVVNEAGE-ART--SGSVTITVAEAET 305 (579)
Q Consensus 242 --~v~W~~~~~~i~~-~~----~~-----~~~~~~~l~i~~~~~-~d~G~y~C~a~n~~g~-~~~--~~~~~v~~~~~~~ 305 (579)
.+.|+.||.++.. .. .. .....++|++..... +..=..+|.+.-.... ... +......+...+.
T Consensus 267 Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~ 346 (486)
T PHA03273 267 SVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPT 346 (486)
T ss_pred ceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCe
Confidence 7999999999872 22 11 112234455544322 3344789998532222 211 2333333444444
Q ss_pred eeeeeeeeccccCceeeeecCeeEEEeeeCC--CeEEEEECC
Q psy16852 306 VMMDVRVESHPTASFQWFIHSEPVVVTGKPT--PLVTWSHDG 345 (579)
Q Consensus 306 ~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~--~~i~W~~~~ 345 (579)
+.+... ....-|.+..-|. ..+.|.-++
T Consensus 347 Is~~F~------------~G~AVCtA~CVP~egV~l~W~v~D 376 (486)
T PHA03273 347 VSVTVE------------DGDAVCTAKCVPSTGVFVSWSVND 376 (486)
T ss_pred EEEEEe------------CCEEEEecccccCCCeeEEEEccC
Confidence 444321 1222366666666 589998766
No 337
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.00 E-value=3e-05 Score=54.34 Aligned_cols=62 Identities=42% Similarity=0.598 Sum_probs=46.5
Q ss_pred EEEEEEEEeeCCCeeEEEECCEEecCCCCE----EEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852 24 ALFTCKVEGHPLPTMTWQKDGTELHATEHY----LITTVESVSTLEIINPTKEDIGVYTCKATNIG 85 (579)
Q Consensus 24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~----~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 85 (579)
+.|.|.+.+.+...+.|++++......... ..........|.|.+++.+|+|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 478999988667789999988776543321 11222345789999999999999999998765
No 338
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=98.00 E-value=7.5e-05 Score=56.98 Aligned_cols=85 Identities=20% Similarity=0.233 Sum_probs=54.1
Q ss_pred CceeeecCCCeEEEEEEEee-CCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852 415 KPVIAEAQSPATLKATVTGR-PTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM 492 (579)
Q Consensus 415 ~~~~~~~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~ 492 (579)
....+..++.++|.|.+.|+ |.. +|.|++||..+..+.... .......| |.|.....
T Consensus 11 s~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~-------------~~~~~~~~-gTYs~~S~------- 69 (115)
T cd05769 11 SEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATD-------------PQALRENT-STYSISSR------- 69 (115)
T ss_pred ChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccc-------------cceecCCC-CeEEEEEE-------
Confidence 33334467789999999984 553 899999999885432100 01112222 67765544
Q ss_pred eeCCeeEEEEeeccccc-ceeEEEEEEeCCeeEEEE
Q psy16852 493 TDGNRSVLLISKITRDQ-IGDVTCRAENVAGSVTCT 527 (579)
Q Consensus 493 ~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~~~ 527 (579)
|.+...+..| ...|+|.+..........
T Consensus 70 -------L~v~~~~w~~~~~~ytC~V~H~g~~~~~~ 98 (115)
T cd05769 70 -------LRVSATEWFNPRNTFTCIVQFYGGTDTDK 98 (115)
T ss_pred -------EEEChHHhccCCCeEEEEEEEeCCcccee
Confidence 8887776644 568999998875555433
No 339
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.99 E-value=5e-05 Score=55.48 Aligned_cols=67 Identities=16% Similarity=0.292 Sum_probs=42.4
Q ss_pred eeCCCCEEEEEEEEee-CC-CeeEEEECCEEecCCCCEEEEEeCCEEEEEEc---CCCCCCCEEEEEEEEcCC
Q psy16852 18 SHQEQPALFTCKVEGH-PL-PTMTWQKDGTELHATEHYLITTVESVSTLEII---NPTKEDIGVYTCKATNIG 85 (579)
Q Consensus 18 v~~G~~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~---~~~~~d~G~Y~C~~~~~~ 85 (579)
+..|+..+|.|.+.|. |. ..++|+|||..+. +..........+.++++. .++..+...|+|++.+..
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 3457788999999985 43 4799999999886 322111111222222221 334667788999998753
No 340
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.98 E-value=0.00011 Score=57.38 Aligned_cols=90 Identities=16% Similarity=0.140 Sum_probs=49.6
Q ss_pred CceeeecCCCeEEEEEEEeeC------CCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecce
Q psy16852 415 KPVIAEAQSPATLKATVTGRP------TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTE 488 (579)
Q Consensus 415 ~~~~~~~g~~~~l~C~~~g~p------~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 488 (579)
..+.+.+|+.++|.|.....+ ...+.|++....-. ....+.+. ... ......-.|+|+...
T Consensus 7 ~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~--~~~~~~~~-~~~------~~~~~~f~gR~~~~~---- 73 (119)
T cd05712 7 KSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPK--NRPPVATN-NRS------RLVHESTRGRFRLLG---- 73 (119)
T ss_pred CEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCC--CCCcEEEc-CCC------ccccccccccEEEec----
Confidence 445688999999999876221 23689999631100 00001000 000 001111122332110
Q ss_pred eeeeeeCCeeEEEEeecccccceeEEEEEEeC
Q psy16852 489 TKIMTDGNRSVLLISKITRDQIGDVTCRAENV 520 (579)
Q Consensus 489 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 520 (579)
........|+|.+++.+|+|.|.|.+...
T Consensus 74 ---~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 74 ---DLGKKNCSLLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ---CCCCCEEEEEEccCChhhCeEEEEEEEcC
Confidence 12445677999999999999999998664
No 341
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.98 E-value=7.2e-05 Score=55.36 Aligned_cols=27 Identities=30% Similarity=0.559 Sum_probs=22.4
Q ss_pred CCCeEEEEEEEee-CCC-eEEEeeCCEEc
Q psy16852 422 QSPATLKATVTGR-PTP-SICWYRGKEEI 448 (579)
Q Consensus 422 g~~~~l~C~~~g~-p~~-~v~W~~~~~~l 448 (579)
|+.++|.|.+.|+ |.. .++|+++|..+
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~ 42 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDS 42 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEEC
Confidence 6789999999995 554 89999998643
No 342
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.98 E-value=6e-05 Score=55.56 Aligned_cols=65 Identities=25% Similarity=0.362 Sum_probs=42.3
Q ss_pred eCCCCEEEEEEEEee-CCC-eeEEEECCEEecCCCCE-EEEEeCC-----EEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852 19 HQEQPALFTCKVEGH-PLP-TMTWQKDGTELHATEHY-LITTVES-----VSTLEIINPTKEDIGVYTCKATNIGG 86 (579)
Q Consensus 19 ~~G~~~~l~C~~~~~-~~~-~v~W~~~g~~~~~~~~~-~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~~~~~~g 86 (579)
..|+.++|.|.+.|. |.. .++|++||..+...... ....+++ .+.|.+. ..+...|+|++.+...
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~---~~~~~~ysC~V~H~~l 84 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETT---PSRGDTYTCVVEHSSL 84 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEeCCC
Confidence 468999999999885 443 79999999987654111 1111111 2344443 3466799999987654
No 343
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.98 E-value=5.2e-05 Score=55.74 Aligned_cols=77 Identities=19% Similarity=0.239 Sum_probs=47.2
Q ss_pred cCceeeeCCCCEEEEEEEEee-CC-CeeEEEECCEEecCCCCE-EEEE-eCC----EEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852 13 IQPVVSHQEQPALFTCKVEGH-PL-PTMTWQKDGTELHATEHY-LITT-VES----VSTLEIINPTKEDIGVYTCKATNI 84 (579)
Q Consensus 13 p~~~~v~~G~~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~~~~-~~~~-~~~----~~~L~i~~~~~~d~G~Y~C~~~~~ 84 (579)
|.......++.++|.|.+.|. |. ..++|++||..+...... .... .++ .+.|.+..-...+...|+|++.+.
T Consensus 6 ps~~~~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~ 85 (94)
T cd05847 6 SSCCDTGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQ 85 (94)
T ss_pred cChHHcCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEEC
Confidence 333333356779999999884 54 589999999986332111 0111 111 245666544445677999999987
Q ss_pred CeeeE
Q psy16852 85 GGVAT 89 (579)
Q Consensus 85 ~g~~~ 89 (579)
.....
T Consensus 86 ~~~~~ 90 (94)
T cd05847 86 GTTFE 90 (94)
T ss_pred Ceeee
Confidence 65433
No 344
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.96 E-value=3.6e-05 Score=57.72 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=46.6
Q ss_pred ccCceeeeCCCCEEEEEEEEee-CC-CeeEEEECCEEecCCCCEEE--EEe---CC----EEEEEEcCCCCCCCEEEEEE
Q psy16852 12 KIQPVVSHQEQPALFTCKVEGH-PL-PTMTWQKDGTELHATEHYLI--TTV---ES----VSTLEIINPTKEDIGVYTCK 80 (579)
Q Consensus 12 ~p~~~~v~~G~~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~~~~~~--~~~---~~----~~~L~i~~~~~~d~G~Y~C~ 80 (579)
+|....+..|+.++|.|.+.|. |. ..++|++||..+........ ... ++ .+.|.|..-...+...|+|+
T Consensus 7 ~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~ 86 (102)
T cd05768 7 PPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCV 86 (102)
T ss_pred CcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEE
Confidence 3444556678999999999985 43 36899999998754321111 111 11 24455543333456689999
Q ss_pred EEcCCe
Q psy16852 81 ATNIGG 86 (579)
Q Consensus 81 ~~~~~g 86 (579)
+.+...
T Consensus 87 V~H~~l 92 (102)
T cd05768 87 VGHEAL 92 (102)
T ss_pred eEeCCC
Confidence 987543
No 345
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.95 E-value=0.00011 Score=53.03 Aligned_cols=71 Identities=23% Similarity=0.432 Sum_probs=47.3
Q ss_pred cCCCeEEEEEEEee-CCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCee
Q psy16852 421 AQSPATLKATVTGR-PTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRS 498 (579)
Q Consensus 421 ~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~ 498 (579)
.++.++|.|.+.|+ |.. .|.|+++|..+........ ......|.|.....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~---------------~~~~~dgty~~~s~------------- 58 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTP---------------PPPNSDGTYSVTSS------------- 58 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEE---------------EEEETTSEEEEEEE-------------
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecc---------------cccccccceeeeEE-------------
Confidence 48899999999985 544 8999999998854321111 11124566654433
Q ss_pred EEEEeecccccceeEEEEEEeCCee
Q psy16852 499 VLLISKITRDQIGDVTCRAENVAGS 523 (579)
Q Consensus 499 ~l~i~~~~~~d~G~Y~C~a~n~~g~ 523 (579)
|.+. ..+...|+|.+.+....
T Consensus 59 -l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 59 -LTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp -EEEE---TTTTGGEEEEEEETTSS
T ss_pred -EEec---CCCCCEEEEEEEECCCC
Confidence 6665 55566899999887554
No 346
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.92 E-value=0.00024 Score=52.13 Aligned_cols=69 Identities=14% Similarity=0.247 Sum_probs=43.5
Q ss_pred cCCCeEEEEEEEe-eCCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCee
Q psy16852 421 AQSPATLKATVTG-RPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRS 498 (579)
Q Consensus 421 ~g~~~~l~C~~~g-~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~ 498 (579)
.|+..+|.|.+.| +|.. .++|+++|..+..+... ..+.+...|.|.....
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~---------------~~~~~~~Dgty~~~s~------------- 65 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSE---------------TRYYPRQDLSFQKFSY------------- 65 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEE---------------eeeEeCCCCcEEEEEE-------------
Confidence 4667899999999 4544 88999999987543111 1122333455544322
Q ss_pred EEEEeecccccceeEEEEEEeCC
Q psy16852 499 VLLISKITRDQIGDVTCRAENVA 521 (579)
Q Consensus 499 ~l~i~~~~~~d~G~Y~C~a~n~~ 521 (579)
|.+.. ++...|+|.+....
T Consensus 66 -L~v~~---~~~~~ytC~V~H~~ 84 (94)
T cd05767 66 -LNFTP---EEGDIYSCIVEHWG 84 (94)
T ss_pred -EEEEC---CCCCeEEEEEEeCC
Confidence 55543 45568999998763
No 347
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.90 E-value=0.00016 Score=52.81 Aligned_cols=30 Identities=30% Similarity=0.376 Sum_probs=24.3
Q ss_pred ecCCCeEEEEEEEee-CCC-eEEEeeCCEEcC
Q psy16852 420 EAQSPATLKATVTGR-PTP-SICWYRGKEEIL 449 (579)
Q Consensus 420 ~~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~ 449 (579)
..|+..+|.|.+.|+ |.. .++|++||..+.
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~ 44 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP 44 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC
Confidence 356778999999995 443 889999999885
No 348
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.89 E-value=7.8e-05 Score=53.77 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.5
Q ss_pred CCeeEEEEeecccccceeEEEEE
Q psy16852 495 GNRSVLLISKITRDQIGDVTCRA 517 (579)
Q Consensus 495 ~~~~~l~i~~~~~~d~G~Y~C~a 517 (579)
.....|.|.+++.+|+|.|.|.+
T Consensus 59 ~~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 59 KNDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred CCEEEEEEcCCCHHHCEEEEEcC
Confidence 56788999999999999999963
No 349
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.89 E-value=6.5e-05 Score=54.20 Aligned_cols=59 Identities=24% Similarity=0.425 Sum_probs=40.3
Q ss_pred CEEEEEEEEeeCCC--eeEEEECCE-----Ee----------c---CCCCEEEEEe--CCEEEEEEcCCCCCCCEEEEEE
Q psy16852 23 PALFTCKVEGHPLP--TMTWQKDGT-----EL----------H---ATEHYLITTV--ESVSTLEIINPTKEDIGVYTCK 80 (579)
Q Consensus 23 ~~~l~C~~~~~~~~--~v~W~~~g~-----~~----------~---~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~ 80 (579)
+++|.|.+.....+ .+.||+... .+ . ...++..... .+..+|+|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 47899998765443 799998431 01 0 1123333333 4568899999999999999996
Q ss_pred E
Q psy16852 81 A 81 (579)
Q Consensus 81 ~ 81 (579)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 4
No 350
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.88 E-value=0.013 Score=53.86 Aligned_cols=170 Identities=14% Similarity=0.126 Sum_probs=93.9
Q ss_pred EEEEEEcCCCCCCCEEEEEEEEcCCeee--EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC--C
Q psy16852 61 VSTLEIINPTKEDIGVYTCKATNIGGVA--TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT--P 135 (579)
Q Consensus 61 ~~~L~i~~~~~~d~G~Y~C~~~~~~g~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--~ 135 (579)
...|.|.++...|+|.|+-...+..... ...+.+.+... +|.+...+.+ +.+|+...-.|.+..+ |+ .
T Consensus 206 ~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~R-----PPsVsV~a~P--VL~Ge~YkAtC~vAnYYPP~Sv 278 (490)
T PHA03271 206 TMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQR-----PASVDVLAPP--VLSGENYKASCIVRHFYPPGSV 278 (490)
T ss_pred eeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEec-----CCCccccCCc--cccCCCceEEEEeeeecCCCce
Confidence 4679999999999997755544433322 23344444432 4445443433 5689999999998654 44 5
Q ss_pred eEEEEECCEEccCCCCceE---EEcCCCC---eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCcc
Q psy16852 136 SICWYRGKEEILPDNGHTM---EFNPTTG---ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVL 209 (579)
Q Consensus 136 ~i~W~~~~~~~~~~~~~~~---~~~~~~~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 209 (579)
.+.||.++..+........ ..+...+ .++|.+.+...+..=..+|.+.-..+....+..-. ..+.++
T Consensus 279 rlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAa-------atP~VY 351 (490)
T PHA03271 279 YVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNAT-------AIPTVY 351 (490)
T ss_pred EEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecc-------cCCccc
Confidence 9999999887654322111 1122111 23444444332333489999976555333332111 123345
Q ss_pred CCCeEeccCCceeeCCCCeEEEEEEEEccC-CCeEEEEECCEEe
Q psy16852 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTP-TPEVKWFKNGKEI 252 (579)
Q Consensus 210 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~~~~~i 252 (579)
.+|.+.. .+..|.. .|.+.--| ...+.|+.++.+.
T Consensus 352 ~~P~ISv-----~FedG~A---VCtA~CVP~gV~lrWlVgD~p~ 387 (490)
T PHA03271 352 HHPRISL-----AFKDGYA---ICTIECVPSGITVRWLVHDEPQ 387 (490)
T ss_pred cCCeEEE-----EEeCCEE---EEeccccCCCcEEEEEecCCCC
Confidence 5555442 2333433 35544333 3489998877554
No 351
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.87 E-value=9.5e-05 Score=54.62 Aligned_cols=75 Identities=20% Similarity=0.223 Sum_probs=43.8
Q ss_pred ccCceeeeCCCCEEEEEEEEee--CC-CeeEEEECCEEe-cCCCCEEEEEeCC----EEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 12 KIQPVVSHQEQPALFTCKVEGH--PL-PTMTWQKDGTEL-HATEHYLITTVES----VSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 12 ~p~~~~v~~G~~~~l~C~~~~~--~~-~~v~W~~~g~~~-~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
+|....+..|+.++|+|.+.|. |. ..++|.|||... ...........++ .+.|.+..-...+.-.|+|.+.+
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H 84 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH 84 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence 3444557779999999999988 43 379999987433 2111000000011 13454544333345589999988
Q ss_pred CCe
Q psy16852 84 IGG 86 (579)
Q Consensus 84 ~~g 86 (579)
...
T Consensus 85 ~~l 87 (96)
T cd07696 85 PDL 87 (96)
T ss_pred CCC
Confidence 643
No 352
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.85 E-value=0.00012 Score=54.71 Aligned_cols=72 Identities=17% Similarity=0.274 Sum_probs=51.0
Q ss_pred ccccCceeeeCCCCEEEEEEEEeeCCC---eeEEEEC--CE-E-----------e-cCCCCE--EEEEeCCEEEEEEcCC
Q psy16852 10 IEKIQPVVSHQEQPALFTCKVEGHPLP---TMTWQKD--GT-E-----------L-HATEHY--LITTVESVSTLEIINP 69 (579)
Q Consensus 10 ~~~p~~~~v~~G~~~~l~C~~~~~~~~---~v~W~~~--g~-~-----------~-~~~~~~--~~~~~~~~~~L~i~~~ 69 (579)
..++....+..|+.++|.|++++.... .+.|+|. |. + . ....++ ......+..+|.|.++
T Consensus 2 l~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L 81 (115)
T cd05721 2 LVQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNL 81 (115)
T ss_pred eeecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCC
Confidence 456778889999999999999775433 5889882 21 0 1 011222 2233345789999999
Q ss_pred CCCCCEEEEEEE
Q psy16852 70 TKEDIGVYTCKA 81 (579)
Q Consensus 70 ~~~d~G~Y~C~~ 81 (579)
+.+|.+.|.|..
T Consensus 82 ~a~DTa~Y~Ca~ 93 (115)
T cd05721 82 RANQTDIYFCKI 93 (115)
T ss_pred CHHHCeEEEEEe
Confidence 999999999976
No 353
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.82 E-value=0.0046 Score=57.84 Aligned_cols=169 Identities=13% Similarity=0.134 Sum_probs=93.2
Q ss_pred EEEEEEcCCCCCCCEEEEEEEEcC-CeeeE--EEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC--
Q psy16852 61 VSTLEIINPTKEDIGVYTCKATNI-GGVAT--CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT-- 134 (579)
Q Consensus 61 ~~~L~i~~~~~~d~G~Y~C~~~~~-~g~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-- 134 (579)
...|.|.+++..++|.|+=++.+. .+... ..+++.++. +|.+...+. -+.+|+...-.|.+..+ |+
T Consensus 288 ~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr------~PsVsV~p~--PVL~Ge~YkAtC~vA~YYPp~S 359 (566)
T PHA03269 288 DFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYK------RPNITVIGD--PVLLGNPYAAYCKVNKYYPPHS 359 (566)
T ss_pred ccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEec------CCCccccCC--ccccCCCceEEEEeeeecCCCc
Confidence 456999999999999998665532 23333 334444443 344443333 35689999999998654 43
Q ss_pred CeEEEEECCEEccCCCC-ceEEEcCCC---CeEEEEECcCCCCC--CeEEEEEEEcCCceeEEE-EEEEEeeccccCCCC
Q psy16852 135 PSICWYRGKEEILPDNG-HTMEFNPTT---GECVLSISEATPQD--EAVYSVKAVNTFGRAECR-ANLVLRKATTIDKPR 207 (579)
Q Consensus 135 ~~i~W~~~~~~~~~~~~-~~~~~~~~~---~~~~l~i~~~~~~d--~G~Y~C~~~~~~~~~~~~-~~~~v~~~~~~~~~~ 207 (579)
..+.||.+++++..... ........+ ..++|.+......| -=..+|.+.-..+....+ ..-.. .+.
T Consensus 360 vrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaa-------tP~ 432 (566)
T PHA03269 360 VIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAV-------TPD 432 (566)
T ss_pred eEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheeccccc-------CCc
Confidence 59999999988874221 111111111 12344443222122 236799986554432222 12221 123
Q ss_pred ccCCCeEeccCCceeeCCCCeEEEEEEEEccCC--CeEEEEECCEEe
Q psy16852 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPT--PEVKWFKNGKEI 252 (579)
Q Consensus 208 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~~~~i 252 (579)
++.+|.+.. .+..|. ..|.+.--|. ..+.|+.++...
T Consensus 433 VY~~PtISm-----~FedG~---AVCtA~CVP~~~V~l~WlVgD~p~ 471 (566)
T PHA03269 433 VYPFPNVSI-----EIIDGH---IVCLAKCVPRGVVHFNWWINDIPI 471 (566)
T ss_pred cccCCeEEE-----EEeCCE---EEEecccccCCCceEEEEecCCCC
Confidence 445555442 233333 3466554444 389998877553
No 354
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.80 E-value=0.00025 Score=52.30 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=25.6
Q ss_pred ecCCCeEEEEEEEee-CCC-eEEEeeCCEEcCC
Q psy16852 420 EAQSPATLKATVTGR-PTP-SICWYRGKEEILP 450 (579)
Q Consensus 420 ~~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~ 450 (579)
..|+.++|.|.+.|+ |.. .+.|+++|..+..
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~ 44 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETE 44 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCC
Confidence 468899999999984 554 8899999998754
No 355
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.76 E-value=0.00018 Score=54.87 Aligned_cols=85 Identities=20% Similarity=0.287 Sum_probs=52.7
Q ss_pred CCcccc-ccCceeeeCCCCEEEEEEEEee-CC-CeeEEEECCEEecCCCCE-EEEEeC--C----EEEEEEcCCCCCC-C
Q psy16852 6 APRFIE-KIQPVVSHQEQPALFTCKVEGH-PL-PTMTWQKDGTELHATEHY-LITTVE--S----VSTLEIINPTKED-I 74 (579)
Q Consensus 6 ~p~~~~-~p~~~~v~~G~~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~~~~-~~~~~~--~----~~~L~i~~~~~~d-~ 74 (579)
||.+.. .|......+++.++|.|.+.+. |. ..++|++||..+..+... ...... + .+.|.|......| .
T Consensus 2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~ 81 (115)
T cd05769 2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPR 81 (115)
T ss_pred CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCC
Confidence 454444 3444556678899999999885 54 489999999987643211 011111 1 3456666554444 5
Q ss_pred EEEEEEEEcCCeeeEE
Q psy16852 75 GVYTCKATNIGGVATC 90 (579)
Q Consensus 75 G~Y~C~~~~~~g~~~~ 90 (579)
..|+|.+.+.......
T Consensus 82 ~~ytC~V~H~g~~~~~ 97 (115)
T cd05769 82 NTFTCIVQFYGGTDTD 97 (115)
T ss_pred CeEEEEEEEeCCccce
Confidence 6899999886544443
No 356
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.71 E-value=0.00015 Score=53.35 Aligned_cols=71 Identities=11% Similarity=0.174 Sum_probs=41.9
Q ss_pred cCceeeeCCCCEEEEEEEEee-CC-CeeEEEECCEEecCCCCEE-EEEeCC----EEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852 13 IQPVVSHQEQPALFTCKVEGH-PL-PTMTWQKDGTELHATEHYL-ITTVES----VSTLEIINPTKEDIGVYTCKATNIG 85 (579)
Q Consensus 13 p~~~~v~~G~~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~~~~~-~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~ 85 (579)
|.......+..++|.|.+.+. |. ..++|.+||..+..+.... ....++ .+.|.|..-. ....|+|.+.+..
T Consensus 8 ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 8 PSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred CCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence 444445557889999999984 43 3789999999875432111 111122 1234333221 2345999998753
No 357
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.70 E-value=0.00025 Score=49.42 Aligned_cols=64 Identities=25% Similarity=0.432 Sum_probs=46.9
Q ss_pred EEEEEEEEeecCCeEEEEECCEEccCCCCc--eEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852 123 ATLKATVTGRPTPSICWYRGKEEILPDNGH--TMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF 186 (579)
Q Consensus 123 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 186 (579)
+.|.|.+.+.+...+.|++++......... ............|.|.++...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 468999987677899999988765443221 1112223445789999999999999999998765
No 358
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.70 E-value=0.00069 Score=49.96 Aligned_cols=27 Identities=30% Similarity=0.623 Sum_probs=22.2
Q ss_pred cCCCeEEEEEEEee-CCC-eEEEeeCCEE
Q psy16852 421 AQSPATLKATVTGR-PTP-SICWYRGKEE 447 (579)
Q Consensus 421 ~g~~~~l~C~~~g~-p~~-~v~W~~~~~~ 447 (579)
.++.++|.|.+.|+ |.. +|+|+++|..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~ 43 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS 43 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence 46679999999985 544 8899999987
No 359
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.69 E-value=0.00066 Score=50.01 Aligned_cols=76 Identities=11% Similarity=0.170 Sum_probs=47.1
Q ss_pred CCCeEEEEEE-EeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEE
Q psy16852 422 QSPATLKATV-TGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL 500 (579)
Q Consensus 422 g~~~~l~C~~-~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l 500 (579)
.....+.|.+ .|.|.+.|.|+++ +....... ......|.|+. .+.|
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~---~~~~~~~~----------------~~~~~~g~~tv--------------~S~l 61 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETT---LGGEAETQ----------------SKENPNGTVTV--------------TSEY 61 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeC---CCCcceeE----------------eecCCCCCEEE--------------EEEE
Confidence 3456899998 5799999999997 11110000 01111233332 3458
Q ss_pred EEeecccccceeEEEEEEeCCeeEEEEEEE
Q psy16852 501 LISKITRDQIGDVTCRAENVAGSVTCTATL 530 (579)
Q Consensus 501 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 530 (579)
.+.....+|...|+|+|.|..-.......+
T Consensus 62 ~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~ 91 (95)
T cd05719 62 RLVPSREANGKELTCVVSHPTLQEPQRFSV 91 (95)
T ss_pred EEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence 888888888889999999986544433333
No 360
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.69 E-value=0.00033 Score=51.60 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=47.5
Q ss_pred ccccCceeeeCCCCEEEEEEE-EeeCCCeeEEEECCEEecCCCCEEEEEe-CC----EEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 10 IEKIQPVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLITTV-ES----VSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 10 ~~~p~~~~v~~G~~~~l~C~~-~~~~~~~v~W~~~g~~~~~~~~~~~~~~-~~----~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
..++..+..-......+.|.+ .|.|.+.|+|+++.. .......... .+ .+.|.+.....+|...|+|++.+
T Consensus 4 ~~~~~~~~~~~~~~~va~C~s~~gkP~a~ItW~~~~~---~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h 80 (95)
T cd05719 4 SAEAGPVALGGEPVTVATCVSANGKPPATISWETTLG---GEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSH 80 (95)
T ss_pred ccceeccccCCCccEEEEEECCCCcCCCEEEEEeCCC---CcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeC
Confidence 334444444455667789998 578899999999721 1111111111 11 36788877777777899999998
Q ss_pred CCeeeE
Q psy16852 84 IGGVAT 89 (579)
Q Consensus 84 ~~g~~~ 89 (579)
......
T Consensus 81 ~~l~~~ 86 (95)
T cd05719 81 PTLQEP 86 (95)
T ss_pred cccCCC
Confidence 764333
No 361
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.64 E-value=0.00084 Score=49.41 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=25.0
Q ss_pred eecCCCeEEEEEEEee-CCC-eEEEeeCCEEcCC
Q psy16852 419 AEAQSPATLKATVTGR-PTP-SICWYRGKEEILP 450 (579)
Q Consensus 419 ~~~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~ 450 (579)
...+..++|.|.+.|+ |.. +++|.++|..+..
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~ 46 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSIL 46 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcC
Confidence 4446789999999994 544 8899999998743
No 362
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.61 E-value=0.00045 Score=49.87 Aligned_cols=64 Identities=25% Similarity=0.403 Sum_probs=43.8
Q ss_pred CCCCEEEEEEEEee-CCC-eeEEEECCEEecCCCCEEEEE--eCC----EEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852 20 QEQPALFTCKVEGH-PLP-TMTWQKDGTELHATEHYLITT--VES----VSTLEIINPTKEDIGVYTCKATNIGG 86 (579)
Q Consensus 20 ~G~~~~l~C~~~~~-~~~-~v~W~~~g~~~~~~~~~~~~~--~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~g 86 (579)
.++.++|.|.+.++ |.. .|.|+++|..+.......... .++ .+.|.+. ..+...|+|++.+...
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 48999999999885 433 799999999886543322222 122 2456665 5566689999987654
No 363
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=97.59 E-value=0.058 Score=49.36 Aligned_cols=72 Identities=21% Similarity=0.357 Sum_probs=47.5
Q ss_pred CceeeCCCCeEEEEEEEE--ccCC-CeEEEEECCEEecc------------------Cc--------eEEeCCeEEEEEc
Q psy16852 219 QALLVPKDSTVTLEAEYT--GTPT-PEVKWFKNGKEIVS------------------KD--------IETKDNVTKLVIK 269 (579)
Q Consensus 219 ~~~~~~~g~~~~l~C~~~--~~p~-~~v~W~~~~~~i~~------------------~~--------~~~~~~~~~l~i~ 269 (579)
....+..|..+.|.|... |+.. ..+.|+--|-++.. .. .......++|+|.
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 345567799999999876 3333 37899764422210 00 1112234799999
Q ss_pred ccCCCCCeEEEEEEEcCCeee
Q psy16852 270 QTTKKTTGKYEIRVVNEAGEA 290 (579)
Q Consensus 270 ~~~~~d~G~y~C~a~n~~g~~ 290 (579)
++..+.+|-|.|+|....-..
T Consensus 352 ka~I~N~GCY~~~a~~g~~~~ 372 (500)
T PHA02914 352 KAHINNAGCYEAQAFMGKFKE 372 (500)
T ss_pred eEEEEcCCceEEEEecCcchh
Confidence 999999999999997654333
No 364
>KOG1480|consensus
Probab=97.54 E-value=1.7e-05 Score=77.51 Aligned_cols=173 Identities=17% Similarity=0.250 Sum_probs=102.9
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCC----eeEEEECCEEecC---CCCEEEEEeCCEEEEEEcCCCCCCCE---
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLP----TMTWQKDGTELHA---TEHYLITTVESVSTLEIINPTKEDIG--- 75 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~----~v~W~~~g~~~~~---~~~~~~~~~~~~~~L~i~~~~~~d~G--- 75 (579)
-|.|+..|++-.+..|.++.|.|.+...+.. .=.|....+.... ++...+.. ......|.....++.|
T Consensus 24 l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~--~~~si~Isr~~v~~~~~~~ 101 (909)
T KOG1480|consen 24 LPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGV--REVSIDISRQQVETSGGPE 101 (909)
T ss_pred cceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeE--EeeeeeeehhhhhcccCcc
Confidence 3678899999999999999999998644321 2334443332210 10000000 1134455555555544
Q ss_pred EEEEEEE--cCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEEccCCCCc
Q psy16852 76 VYTCKAT--NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDNGH 152 (579)
Q Consensus 76 ~Y~C~~~--~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~ 152 (579)
.|.|+-. ...|...... -.|...- ....+...+.-..+.++..+.+.|.. .+.|...++|++++..+.++...
T Consensus 102 d~~cQc~a~~~~g~~~s~~-a~vr~ay---~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~ 177 (909)
T KOG1480|consen 102 DYWCQCVAWSDDGTVKSRK-ATVRIAY---LRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANV 177 (909)
T ss_pred ceeeeeeeecCCCcchhhh-HHHHHHH---HHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccc
Confidence 6777643 3334211110 0110000 00122233344567788899999986 56788899999998887774444
Q ss_pred eEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCcee
Q psy16852 153 TMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRA 189 (579)
Q Consensus 153 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (579)
....+ ..|.+..++..|.|+|+|++.|..+..
T Consensus 178 ~~~~d-----~~li~~~arlsd~~nytc~a~ni~~~r 209 (909)
T KOG1480|consen 178 IRASD-----HNLIISQARLSDSGNYTCEATNIVAKR 209 (909)
T ss_pred hhhhc-----CCccccchhhhhcccceeeeehhhccc
Confidence 33332 469999999999999999999876643
No 365
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.53 E-value=0.00012 Score=48.14 Aligned_cols=51 Identities=22% Similarity=0.471 Sum_probs=36.2
Q ss_pred eCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 19 HQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 19 ~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
..|..|+|+|...+ ..+.|++|+..+.... ..+.+.+-. ++.|.|+|.+.+
T Consensus 5 isGTtVtlTCP~~~---~~i~W~~n~~~~~g~~----------~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLSG---DDIKWKKNDQVSQGSD----------EKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCCC---CCceEEeCCccCCCCC----------ceEEeeccC-CCCceEEEEeCC
Confidence 46899999997542 2499999996665432 234444555 889999999854
No 366
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.50 E-value=0.00084 Score=49.07 Aligned_cols=70 Identities=14% Similarity=0.239 Sum_probs=48.6
Q ss_pred ccCc-eeeeCCCCEEE-EEEE-EeeCCCeeEEEECCEEec-------CCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852 12 KIQP-VVSHQEQPALF-TCKV-EGHPLPTMTWQKDGTELH-------ATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81 (579)
Q Consensus 12 ~p~~-~~v~~G~~~~l-~C~~-~~~~~~~v~W~~~g~~~~-------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (579)
.+.+ +.+.+|+.+.+ +|.+ .|.|++.|.|+.+..... ....+.+ .+.|++.....+|.-.++|++
T Consensus 6 ~~~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV-----~S~~~l~p~r~d~G~~vtC~V 80 (97)
T cd07704 6 SPGPSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTV-----TSEYIWVPSRHANGHPLTCVV 80 (97)
T ss_pred CCCCeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEE-----EEEEEEEeCHHHCCcEEEEEE
Confidence 3344 66889999999 9997 567888999998633221 0112222 257787777777888999999
Q ss_pred EcCCe
Q psy16852 82 TNIGG 86 (579)
Q Consensus 82 ~~~~g 86 (579)
.+..-
T Consensus 81 ~H~al 85 (97)
T cd07704 81 SHPAL 85 (97)
T ss_pred eCccc
Confidence 88644
No 367
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.49 E-value=0.00083 Score=49.31 Aligned_cols=69 Identities=12% Similarity=0.133 Sum_probs=43.4
Q ss_pred eCCCCEEEEEEEE-eeCCCeeEEEECCEEecCCCCEEEEE--eCC---EEEEEEcCCCCCCCEEEEEEEEcCCeeeEE
Q psy16852 19 HQEQPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLITT--VES---VSTLEIINPTKEDIGVYTCKATNIGGVATC 90 (579)
Q Consensus 19 ~~G~~~~l~C~~~-~~~~~~v~W~~~g~~~~~~~~~~~~~--~~~---~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~ 90 (579)
-.-..+.++|.+. |.|.+.|+|+++.... ....... .+. .+.|.+.....+|...|+|++.+.......
T Consensus 13 ~~~~~~va~C~s~~gkPaa~IsW~~~~~g~---~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~ 87 (95)
T cd07703 13 GTIPVPVAKCVSANGRPPARISWSSTLGGN---ANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQ 87 (95)
T ss_pred CCCccEEEEEEcCCCCCCcEEEEEcCCCCC---eeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCe
Confidence 3445678899875 6788899999972211 1111111 111 257788777777788999999987643333
No 368
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.49 E-value=0.00039 Score=45.94 Aligned_cols=60 Identities=23% Similarity=0.506 Sum_probs=42.3
Q ss_pred CCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 20 QEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVL 97 (579)
Q Consensus 20 ~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~ 97 (579)
..+.|.|+|.+. .+|.|++ |..+.... +.+|.|.+...+-.|.|.|.+.+ ...+..|.|+
T Consensus 5 ~~~~V~L~C~~~----tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQVy 64 (69)
T cd07691 5 SEGKVFLKCNGA----TNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE----PNKEKTLQVY 64 (69)
T ss_pred cCceEEEEecCC----CcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc----CCCcEEEEEE
Confidence 356899999662 3699999 65554222 36788888899999999999865 2334455554
No 369
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.47 E-value=0.0011 Score=48.84 Aligned_cols=65 Identities=15% Similarity=0.257 Sum_probs=39.0
Q ss_pred CCCCEEEEEEEEee-CC-CeeEEEECCEEecCCCCE-EEEEe-CC----EEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852 20 QEQPALFTCKVEGH-PL-PTMTWQKDGTELHATEHY-LITTV-ES----VSTLEIINPTKEDIGVYTCKATNIG 85 (579)
Q Consensus 20 ~G~~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~~~~-~~~~~-~~----~~~L~i~~~~~~d~G~Y~C~~~~~~ 85 (579)
.++.++|.|.+.++ |. ..++|++||.. ..+... ..... ++ .+.|.+..-.......|+|++.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 57789999999885 43 47999999997 322100 01111 11 2344444332223568999998754
No 370
>PHA02633 hypothetical protein; Provisional
Probab=97.40 E-value=0.00071 Score=43.44 Aligned_cols=40 Identities=25% Similarity=0.406 Sum_probs=34.3
Q ss_pred EEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEEecc
Q psy16852 61 VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKE 100 (579)
Q Consensus 61 ~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~ 100 (579)
...|.|.++..+|+|.|.|.++|..-....++.++|..+.
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 4679999999999999999999887777888888887553
No 371
>KOG0613|consensus
Probab=97.31 E-value=0.00074 Score=70.99 Aligned_cols=215 Identities=18% Similarity=0.140 Sum_probs=123.8
Q ss_pred EEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCC----------CCC---ceecCCCceEEccCCcEEEEEE
Q psy16852 62 STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESG----------EAP---KFTKPLKPVIAEAQSPATLKAT 128 (579)
Q Consensus 62 ~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~----------~~~---~~~~~~~~~~~~~g~~~~l~C~ 128 (579)
.++.|.+-...+.+.|+|...+..+.....+...+....... .++ ........+....+..+++.|.
T Consensus 278 ~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~ 357 (1205)
T KOG0613|consen 278 NTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTA 357 (1205)
T ss_pred ccccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeeccc
Confidence 456666666777788888887766655544443332211100 111 1111223455677888999999
Q ss_pred EEeecCCe-EEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCC
Q psy16852 129 VTGRPTPS-ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPR 207 (579)
Q Consensus 129 ~~~~p~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~ 207 (579)
..+.+.+. +.||++......................+.|..+...+.+.|.|.+.|..|.........+......
T Consensus 358 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~g---- 433 (1205)
T KOG0613|consen 358 LSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPG---- 433 (1205)
T ss_pred ccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCC----
Confidence 98888775 9999876655444333333333334457888999999999999999999887655444444322111
Q ss_pred ccCCCeEeccCCceeeCC--CCeEEEEEEEEccCCC--eEEEEECCEEeccCce-EEeCCeEEEEEcccCCCCCeEEEEE
Q psy16852 208 VLEAPTIVRPLQALLVPK--DSTVTLEAEYTGTPTP--EVKWFKNGKEIVSKDI-ETKDNVTKLVIKQTTKKTTGKYEIR 282 (579)
Q Consensus 208 ~~~~p~~~~~~~~~~~~~--g~~~~l~C~~~~~p~~--~v~W~~~~~~i~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~ 282 (579)
..|............. -+.+.+.|...+.+.+ .++|++++-+...... .......+|.+.-....+.|.|.-.
T Consensus 434 --t~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s~~l~r~~~tslLlk~~~~~~~A~~~~a 511 (1205)
T KOG0613|consen 434 --TQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRSVTLTRDVLTSLLLKVASLSDGAQYTRA 511 (1205)
T ss_pred --CCCccccccccccccccCCcccccccCCCCccccceeEeeccCCcccccccccccccchhhheeeccCCCccchhhhh
Confidence 1222222222222223 3778889988877644 5666766544433221 1122334566666666777777443
No 372
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.31 E-value=0.0017 Score=47.78 Aligned_cols=77 Identities=21% Similarity=0.228 Sum_probs=46.8
Q ss_pred CCceeeecCCCeEEEEEEEee--CCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceee
Q psy16852 414 LKPVIAEAQSPATLKATVTGR--PTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK 490 (579)
Q Consensus 414 ~~~~~~~~g~~~~l~C~~~g~--p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~ 490 (579)
+.......+..++|+|.+.|+ |.. .|.|.++|.. +. .. ....+...|.|...
T Consensus 11 Ps~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~---~~-~~--------------t~~~~~~dgTys~~------- 65 (99)
T cd04986 11 PALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK---EA-VQ--------------TSAESDQCGCYSVS------- 65 (99)
T ss_pred cChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc---Cc-EE--------------cCcccCCCCCEEEE-------
Confidence 333334468899999999984 433 8999998865 11 00 01112224556443
Q ss_pred eeeeCCeeEEEEeecccccceeEEEEEEeCCe
Q psy16852 491 IMTDGNRSVLLISKITRDQIGDVTCRAENVAG 522 (579)
Q Consensus 491 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 522 (579)
+.|.+..-+......|+|.+.+...
T Consensus 66 -------S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 66 -------SVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred -------EEEEeCHHHhcCCCeEEEEEECCCc
Confidence 3377765555555679999987643
No 373
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.25 E-value=0.0011 Score=48.76 Aligned_cols=80 Identities=18% Similarity=0.202 Sum_probs=45.4
Q ss_pred CCccc-cccCceeeeCCCCEEEEEEEEeeC---CCeeEEEECCEEecCCCCEEEEEeCC----EEEEEEcCCCCCCCEEE
Q psy16852 6 APRFI-EKIQPVVSHQEQPALFTCKVEGHP---LPTMTWQKDGTELHATEHYLITTVES----VSTLEIINPTKEDIGVY 77 (579)
Q Consensus 6 ~p~~~-~~p~~~~v~~G~~~~l~C~~~~~~---~~~v~W~~~g~~~~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y 77 (579)
+|.+. .+|.......+..++|+|.+.+.- ...|.|.++|.. ...........++ .+.|.|..-...-...|
T Consensus 3 ~PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~y 81 (99)
T cd04986 3 KPSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPF 81 (99)
T ss_pred CCEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeE
Confidence 34433 345555566789999999998843 248999999875 1110000000011 24555542222333469
Q ss_pred EEEEEcCCe
Q psy16852 78 TCKATNIGG 86 (579)
Q Consensus 78 ~C~~~~~~g 86 (579)
+|++.+...
T Consensus 82 tC~V~H~~l 90 (99)
T cd04986 82 ACTVTHPEG 90 (99)
T ss_pred EEEEECCCc
Confidence 999987643
No 374
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.19 E-value=0.0033 Score=46.18 Aligned_cols=72 Identities=14% Similarity=0.117 Sum_probs=43.9
Q ss_pred CcEEEEEEE-EeecCCeEEEEECCEEccCCCCceEEEcCCCC---eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy16852 121 SPATLKATV-TGRPTPSICWYRGKEEILPDNGHTMEFNPTTG---ECVLSISEATPQDEAVYSVKAVNTFGRAECRANL 195 (579)
Q Consensus 121 ~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~ 195 (579)
....+.|.. .|.|++.|+|+++... ...........+. .+.|.+.....+|...|+|++.|..........+
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g---~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~ 91 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGG---NANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV 91 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCC---CeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence 457889987 5789999999987211 1111111111111 2467776666677779999999876544443333
No 375
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.16 E-value=0.0049 Score=46.31 Aligned_cols=71 Identities=14% Similarity=0.194 Sum_probs=50.5
Q ss_pred CCceEEccCCcEEEEEEEEeec--C-CeEEEEECCEEc---------------cCCCCceEEEcCCCCeEEEEECcCCCC
Q psy16852 112 LKPVIAEAQSPATLKATVTGRP--T-PSICWYRGKEEI---------------LPDNGHTMEFNPTTGECVLSISEATPQ 173 (579)
Q Consensus 112 ~~~~~~~~g~~~~l~C~~~~~p--~-~~i~W~~~~~~~---------------~~~~~~~~~~~~~~~~~~l~i~~~~~~ 173 (579)
+....+..|+.++|.|.++++. . ..+.|+|..... ....+.....+.......|.|.+++.+
T Consensus 5 ~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~ 84 (115)
T cd05721 5 QSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRAN 84 (115)
T ss_pred cCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHH
Confidence 3456677899999999986543 3 478898842210 012233455566667789999999999
Q ss_pred CCeEEEEEE
Q psy16852 174 DEAVYSVKA 182 (579)
Q Consensus 174 d~G~Y~C~~ 182 (579)
|.+.|.|..
T Consensus 85 DTa~Y~Ca~ 93 (115)
T cd05721 85 QTDIYFCKI 93 (115)
T ss_pred HCeEEEEEe
Confidence 999999976
No 376
>KOG0613|consensus
Probab=97.11 E-value=0.005 Score=65.05 Aligned_cols=254 Identities=13% Similarity=0.051 Sum_probs=146.7
Q ss_pred eeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEec
Q psy16852 222 LVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA 301 (579)
Q Consensus 222 ~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~ 301 (579)
....+....|.|.+.+.+.+.+.|+.+....... ..+...+.+.+......+.|+|...+..+.........+.+.
T Consensus 240 ~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~----~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~ 315 (1205)
T KOG0613|consen 240 VTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK----HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIG 315 (1205)
T ss_pred cccchhheeeeEEeecCCCchHHHHhcchhhhcc----cCCCccccccccCCccccceeeecccCCcccceeeeEEeecc
Confidence 3556778899999998888888887765443322 234456777777888888899988887776555444444321
Q ss_pred cce---ee---e----eeeeeeccccCceeeee---cCeeEEEeeeCCCe-EEEEECCEEccCCCeEEE-EECCCCeEEE
Q psy16852 302 EAE---TV---M----MDVRVESHPTASFQWFI---HSEPVVVTGKPTPL-VTWSHDGTPMKEGKEVTI-YQDTDGLCKL 366 (579)
Q Consensus 302 ~~~---~~---~----l~~~~~~~~~~~~~~~~---~~~~~~~~g~p~~~-i~W~~~~~~~~~~~~~~~-~~~~~~~~~l 366 (579)
.+. .. . ....+.......+.|.. ...+|...+.+.+. +.|++++.....+..-.. .........+
T Consensus 316 ~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~ 395 (1205)
T KOG0613|consen 316 KGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTY 395 (1205)
T ss_pred ccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcch
Confidence 110 00 0 00000011111111111 11235556666664 899988776654431111 1111222368
Q ss_pred EEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecC--CCeEEEEEEEeeCCC--eEEEe
Q psy16852 367 AISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQ--SPATLKATVTGRPTP--SICWY 442 (579)
Q Consensus 367 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g--~~~~l~C~~~g~p~~--~v~W~ 442 (579)
.|..+...+.+.|.|.|.|..|.........+....+...++.+. .....+...+ +.+.+.|...+.+.+ .++|.
T Consensus 396 ~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~k-k~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~ 474 (1205)
T KOG0613|consen 396 TIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPKFK-KDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTI 474 (1205)
T ss_pred hhhhcCcccccccccceeccCCcccccchhhcccccCCCCCcccc-ccccccccccCCcccccccCCCCccccceeEeec
Confidence 899999999999999999999977666555555543333333333 2233333444 788999998887755 55666
Q ss_pred eCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852 443 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 484 (579)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~ 484 (579)
+++...... ..... .+...+|.+.-....|+|.|.-..
T Consensus 475 ~~~~~~s~~--s~~l~--r~~~tslLlk~~~~~~~A~~~~a~ 512 (1205)
T KOG0613|consen 475 KDGLPLSDR--SVTLT--RDVLTSLLLKVASLSDGAQYTRAL 512 (1205)
T ss_pred cCCcccccc--ccccc--ccchhhheeeccCCCccchhhhhh
Confidence 665443221 11111 444556777777888888774333
No 377
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.10 E-value=0.001 Score=44.02 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=16.7
Q ss_pred CCCeEEEEEEEeeCCCeEEEeeCCEEcC
Q psy16852 422 QSPATLKATVTGRPTPSICWYRGKEEIL 449 (579)
Q Consensus 422 g~~~~l~C~~~g~p~~~v~W~~~~~~l~ 449 (579)
.+.|.|+|.+ ..+|.|++ |..+.
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~ 28 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEIL 28 (69)
T ss_pred CceEEEEecC----CCcEEEec-Ccccc
Confidence 4679999965 24699999 55543
No 378
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.09 E-value=0.00098 Score=43.85 Aligned_cols=26 Identities=15% Similarity=0.388 Sum_probs=19.8
Q ss_pred cCCCeEEEEEEEeeCCCeEEEeeCCEEcC
Q psy16852 421 AQSPATLKATVTGRPTPSICWYRGKEEIL 449 (579)
Q Consensus 421 ~g~~~~l~C~~~g~p~~~v~W~~~~~~l~ 449 (579)
.|..|+|+|...+. .+.|++++..+.
T Consensus 6 sGTtVtlTCP~~~~---~i~W~~n~~~~~ 31 (65)
T cd07692 6 SGTTVTVTCPLSGD---DIKWKKNDQVSQ 31 (65)
T ss_pred eccEEEEECCCCCC---CceEEeCCccCC
Confidence 58899999976522 399999986654
No 379
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.07 E-value=0.0028 Score=45.95 Aligned_cols=66 Identities=21% Similarity=0.284 Sum_probs=41.3
Q ss_pred eeCCCCEEEEEEEEe-eCC--CeeEEEECCEEecCCCCEEE----EEeCCEEEEEEcCCCCCCCE-EEEEEEEcC
Q psy16852 18 SHQEQPALFTCKVEG-HPL--PTMTWQKDGTELHATEHYLI----TTVESVSTLEIINPTKEDIG-VYTCKATNI 84 (579)
Q Consensus 18 v~~G~~~~l~C~~~~-~~~--~~v~W~~~g~~~~~~~~~~~----~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~ 84 (579)
+.+|..++|.|.+.+ +|. ..+.|++....+........ ........++|... .+|.| .|+|+|...
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~ 85 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH 85 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence 379999999999964 344 47999987766654321110 00111245555554 66655 999999743
No 380
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.99 E-value=0.002 Score=47.15 Aligned_cols=70 Identities=10% Similarity=0.133 Sum_probs=45.9
Q ss_pred ceEEccCCcEEE-EEEE-EeecCCeEEEEECCEEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852 114 PVIAEAQSPATL-KATV-TGRPTPSICWYRGKEEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFG 187 (579)
Q Consensus 114 ~~~~~~g~~~~l-~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~ 187 (579)
...+.+|+.+.+ .|.. .|.|+++|+|+.+..... ....... .++ .+.+.+...+.+|.-.++|++.+..-
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~---~~~~~~~-~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS---ESHSQEH-PNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc---ceeeecC-CCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 455678899999 9986 678999999997633221 0111111 111 24567766667777799999988754
No 381
>PHA02982 hypothetical protein; Provisional
Probab=96.94 E-value=0.0098 Score=48.93 Aligned_cols=118 Identities=15% Similarity=0.327 Sum_probs=73.1
Q ss_pred ceeeeCCCCEEEEEEEEee-CCCeeEEEECCE-----------EecC--------CCCEEEEEeCCEEEEEEcCCCCCCC
Q psy16852 15 PVVSHQEQPALFTCKVEGH-PLPTMTWQKDGT-----------ELHA--------TEHYLITTVESVSTLEIINPTKEDI 74 (579)
Q Consensus 15 ~~~v~~G~~~~l~C~~~~~-~~~~v~W~~~g~-----------~~~~--------~~~~~~~~~~~~~~L~i~~~~~~d~ 74 (579)
++....|++|.|.|..... .-.+..|+.+.. .+.. ...+.++..+..++|+|.++..+..
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~ 112 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL 112 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence 4677889999999996332 234688987432 1211 2345667777889999999999999
Q ss_pred EEEEEEEEcCCeeeEE-EEEEEEEecccCCCCCceecCCCceEEcc-CCcEEEEEEEEeecCCeEEEEECCE
Q psy16852 75 GVYTCKATNIGGVATC-SANLIVLEKEESGEAPKFTKPLKPVIAEA-QSPATLKATVTGRPTPSICWYRGKE 144 (579)
Q Consensus 75 G~Y~C~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-g~~~~l~C~~~~~p~~~i~W~~~~~ 144 (579)
|-|+|++....+..+. +.=+.|+.. ...+ ...+ ...-.+.|.+.+.-..-..|.-+|-
T Consensus 113 GCYtc~~ks~~~k~E~c~kCl~V~~~-----~V~~-------~W~e~nNeT~V~CyVgS~~~dvp~W~V~GV 172 (251)
T PHA02982 113 GCFTCEAKDAEGKEETCEKCLEIQKE-----DILY-------VVEEHNNETIITCFVGSKHGDVPRFIVAGI 172 (251)
T ss_pred CceEEEEecCCCchheeheeeeEecc-----eEEE-------EEEecCCeEEEEEEEEeccCCCccEEEeeE
Confidence 9999999876543332 222233100 0011 1112 3445779988655443347877654
No 382
>KOG1480|consensus
Probab=96.88 E-value=0.00038 Score=68.54 Aligned_cols=175 Identities=21% Similarity=0.288 Sum_probs=99.6
Q ss_pred CCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEE-EcCCCC----eEEEEECcCCCCCCe---
Q psy16852 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTME-FNPTTG----ECVLSISEATPQDEA--- 176 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~-~~~~~~----~~~l~i~~~~~~d~G--- 176 (579)
.+.+...+.+-.+..|..+.|.|.+. |.++|.+.-+..-+......... .+...+ .....|.....++.|
T Consensus 24 l~~~~~~p~~~yii~~~p~~l~c~a~--~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~ 101 (909)
T KOG1480|consen 24 LPHFTTEPKSAYIIKNKPLRLQCKAN--PATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPE 101 (909)
T ss_pred cceeeecCCccceecCCCccceecCC--cccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCcc
Confidence 34566667777788899999999975 44444333332222222111111 111111 123444444444433
Q ss_pred EEE--EEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEE-EccCCCeEEEEECCEEec
Q psy16852 177 VYS--VKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEY-TGTPTPEVKWFKNGKEIV 253 (579)
Q Consensus 177 ~Y~--C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~i~ 253 (579)
.|. |.+....|...... -.+.. .+..-.+...+....+..+..+.+.|.. .+.|...+.|++++..+.
T Consensus 102 d~~cQc~a~~~~g~~~s~~-a~vr~--------ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~ 172 (909)
T KOG1480|consen 102 DYWCQCVAWSDDGTVKSRK-ATVRI--------AYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVID 172 (909)
T ss_pred ceeeeeeeecCCCcchhhh-HHHHH--------HHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCC
Confidence 555 55666555221110 01110 0111223333444557778888999865 467778999999998877
Q ss_pred cCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeee
Q psy16852 254 SKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEA 290 (579)
Q Consensus 254 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~ 290 (579)
............+.+..+...|.|+|+|+|.|-.+..
T Consensus 173 pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r 209 (909)
T KOG1480|consen 173 PDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKR 209 (909)
T ss_pred ccccchhhhcCCccccchhhhhcccceeeeehhhccc
Confidence 6443333444568889999999999999999877653
No 383
>PHA02633 hypothetical protein; Provisional
Probab=96.85 E-value=0.0037 Score=40.27 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=32.4
Q ss_pred eeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 497 RSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 497 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
...|.|-++.-+|+|.|.|+..|..=....++.|+|.
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~ 53 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC 53 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence 3449999999999999999999988888888888875
No 384
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.73 E-value=0.0051 Score=47.38 Aligned_cols=90 Identities=13% Similarity=0.147 Sum_probs=49.7
Q ss_pred eecCCCeEEEEEEEee-----CCCeEEEeeCCEEcCCC--CCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeee
Q psy16852 419 AEAQSPATLKATVTGR-----PTPSICWYRGKEEILPD--NGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKI 491 (579)
Q Consensus 419 ~~~g~~~~l~C~~~g~-----p~~~v~W~~~~~~l~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~ 491 (579)
...++++.|.|.+... +...|.|.++|..+-.. ...... ......+.+ .+....|
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~-~~~f~sa~i--~~l~kG~--------------- 85 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKST-SDNFPSAKI--SELLKGN--------------- 85 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEE-EGGGTT-BE--GGGGGTB---------------
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceec-ccCccccch--hHhhCCC---------------
Confidence 3458899999998642 22369999998876221 111110 001111122 3333322
Q ss_pred eeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 492 MTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 492 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
+.|.+...+.- .|+|+|.|.....+....++|+..
T Consensus 86 ------aSL~~~~~~a~-~GnYTCeVt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 86 ------ASLKMDKSDAV-EGNYTCEVTELSREGETTIELKYR 120 (130)
T ss_dssp --------EEEEHHHHH--EEEEEEEEETTEEEEEEEEEEE-
T ss_pred ------EEEEEcchhcc-ccceEEEEEecCCCceEEEEEEEE
Confidence 34777775555 899999999998888888888863
No 385
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.44 E-value=0.022 Score=41.50 Aligned_cols=65 Identities=15% Similarity=0.155 Sum_probs=42.2
Q ss_pred eCCCCeEEEEEEEEc-cCC--CeEEEEECCEEeccCceEE-------eCCeEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852 223 VPKDSTVTLEAEYTG-TPT--PEVKWFKNGKEIVSKDIET-------KDNVTKLVIKQTTKKTTGKYEIRVVNEA 287 (579)
Q Consensus 223 ~~~g~~~~l~C~~~~-~p~--~~v~W~~~~~~i~~~~~~~-------~~~~~~l~i~~~~~~d~G~y~C~a~n~~ 287 (579)
+.+|+.+++.|.+.+ +|. ..+.|++....+....... ......+++.....+|.-.|+|+|.-..
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L~l 86 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKLHI 86 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEEEee
Confidence 467999999999985 555 4799998766555433111 1233556666554444449999996443
No 386
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.43 E-value=0.0017 Score=49.93 Aligned_cols=78 Identities=13% Similarity=0.195 Sum_probs=46.0
Q ss_pred ccCCcEEEEEEEEee-----cCCeEEEEECCEEccCCCC------------ceEEEcCCCCeEEEEECcCCCCCCeEEEE
Q psy16852 118 EAQSPATLKATVTGR-----PTPSICWYRGKEEILPDNG------------HTMEFNPTTGECVLSISEATPQDEAVYSV 180 (579)
Q Consensus 118 ~~g~~~~l~C~~~~~-----p~~~i~W~~~~~~~~~~~~------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 180 (579)
.=++++.|+|.+... +...|.|.+++..+..-++ ..+ .+...|..+|.+...+.- .|+|+|
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i-~~l~kG~aSL~~~~~~a~-~GnYTC 102 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKI-SELLKGNASLKMDKSDAV-EGNYTC 102 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BE-GGGGGTB--EEEEHHHHH--EEEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccch-hHhhCCCEEEEEcchhcc-ccceEE
Confidence 348899999998532 2357999998887542111 112 223346677888875444 899999
Q ss_pred EEEcCCceeEEEEEEEE
Q psy16852 181 KAVNTFGRAECRANLVL 197 (579)
Q Consensus 181 ~~~~~~~~~~~~~~~~v 197 (579)
.+.......+....+..
T Consensus 103 eVt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 103 EVTELSREGETTIELKY 119 (130)
T ss_dssp EEEETTEEEEEEEEEEE
T ss_pred EEEecCCCceEEEEEEE
Confidence 99887766665555554
No 387
>PHA02982 hypothetical protein; Provisional
Probab=95.97 E-value=0.021 Score=47.13 Aligned_cols=90 Identities=19% Similarity=0.328 Sum_probs=46.9
Q ss_pred eeeecCCCeEEEEEEE-eeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeC
Q psy16852 417 VIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDG 495 (579)
Q Consensus 417 ~~~~~g~~~~l~C~~~-g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~ 495 (579)
+....++++.|+|... +....+..|+.+........ .++...+--.+--+ |.| -+-+.+..++
T Consensus 34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~--------~~~~~~iN~~~y~~---~~~-----kd~y~~sv~g 97 (251)
T PHA02982 34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQE--------ANGGTGINAFNYVP---GPY-----KDKYALSVSG 97 (251)
T ss_pred hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEee--------ecCcceeccccccC---Ccc-----ceeEEEEEec
Confidence 3456799999999853 23334789998543211100 11111110000000 001 1123455667
Q ss_pred CeeEEEEeecccccceeEEEEEEeCCe
Q psy16852 496 NRSVLLISKITRDQIGDVTCRAENVAG 522 (579)
Q Consensus 496 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g 522 (579)
..|+|+|+++..+..|=|+|.|....+
T Consensus 98 ~~STLTIkk~~i~N~GCYtc~~ks~~~ 124 (251)
T PHA02982 98 NSSTFTMKKPDPQNLGCFTCEAKDAEG 124 (251)
T ss_pred cceeEEeccCCcccCCceEEEEecCCC
Confidence 777777777777777777777766544
No 388
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=95.95 E-value=0.021 Score=41.72 Aligned_cols=84 Identities=15% Similarity=0.162 Sum_probs=46.9
Q ss_pred cCceeeeCCCCEEEEEEEEeeCCCeeEEEE---------------CCEEecCC--CCEEEEEeCCEEEEEEcCCCCCCCE
Q psy16852 13 IQPVVSHQEQPALFTCKVEGHPLPTMTWQK---------------DGTELHAT--EHYLITTVESVSTLEIINPTKEDIG 75 (579)
Q Consensus 13 p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~---------------~g~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~G 75 (579)
++.+....|+++.|.=.......-+++|.. ++...... ..-+..+...+..|.|..++..|+|
T Consensus 5 ~~~VvgiSG~pl~LrP~~~Qtk~~sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~enlaLlIkaAq~qDSG 84 (108)
T PF11465_consen 5 ADHVVGISGKPLQLRPSNIQTKVYSVQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFTSENLALLIKAAQPQDSG 84 (108)
T ss_dssp EEEEEEETTS-EEE--SS---SSEEEEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEETTTTEEEESS-SGGG-E
T ss_pred ccceEEccCCEEEECCCCccceeEEEEEEEEcccCCceEEEEEEcCCCcccccccccceEeeeccCceEEEeecCcccCc
Confidence 455777788888887332111122466643 33332221 1112344445678999999999999
Q ss_pred EEEEEEEcCCeeeEE-EEEEEE
Q psy16852 76 VYTCKATNIGGVATC-SANLIV 96 (579)
Q Consensus 76 ~Y~C~~~~~~g~~~~-~~~~~v 96 (579)
.|.-++++..|.... ...+.|
T Consensus 85 ~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 85 LYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp EEEEEEEETTSCEEEEEEEEEE
T ss_pred eEEEEEEcCCCcEEEEEEEEEe
Confidence 999999999887643 334433
No 389
>KOG4597|consensus
Probab=95.25 E-value=0.031 Score=52.36 Aligned_cols=94 Identities=14% Similarity=0.061 Sum_probs=63.4
Q ss_pred eecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeeccee
Q psy16852 410 FTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTET 489 (579)
Q Consensus 410 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~ 489 (579)
+..-+....+..|++..++|-+.|.|.+.|.|.+.- .++..+.+. .+..+ .+
T Consensus 199 l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~-----anr~~vv~~---~nq~~-----------------e~--- 250 (560)
T KOG4597|consen 199 LVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVF-----ANRENVVMR---PNQTV-----------------EN--- 250 (560)
T ss_pred cccCcchhhcccchhhcccccccCCcCceeeeehhh-----ccccceeec---Ccccc-----------------CC---
Confidence 333344556788999999999999999999998731 122222110 00000 00
Q ss_pred eeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 490 KIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 490 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
..-.....|.|.+....|+|.|+|.|.|..|-..+.+.+.+.
T Consensus 251 --p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c~s~ 292 (560)
T KOG4597|consen 251 --PVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRRDVPCSSV 292 (560)
T ss_pred --cceeeeeeEEEcchhhcCCCceeeccccccceeeccceeeee
Confidence 011234459999999999999999999999998888887764
No 390
>KOG4597|consensus
Probab=95.16 E-value=0.033 Score=52.16 Aligned_cols=91 Identities=19% Similarity=0.188 Sum_probs=69.0
Q ss_pred CccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE---CCEEecCCCC--EEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK---DGTELHATEH--YLITTVESVSTLEIINPTKEDIGVYTCKA 81 (579)
Q Consensus 7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~---~g~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (579)
|.++.-|....+.+|++..++|-+.|.+.+.|+|.+ |++.+..... +..........|.|=+....|+|-|+|.+
T Consensus 197 c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~ 276 (560)
T KOG4597|consen 197 CALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSA 276 (560)
T ss_pred cccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecc
Confidence 567777888899999999999999999999999965 4444332221 11112223577999999999999999999
Q ss_pred EcCCeeeEEEEEEEEE
Q psy16852 82 TNIGGVATCSANLIVL 97 (579)
Q Consensus 82 ~~~~g~~~~~~~~~v~ 97 (579)
.+..|-....+.+.+.
T Consensus 277 rcg~g~~~rdv~c~s~ 292 (560)
T KOG4597|consen 277 RCGAGFLRRDVPCSSV 292 (560)
T ss_pred ccccceeeccceeeee
Confidence 9998877777776664
No 391
>PHA03042 CD47-like protein; Provisional
Probab=95.02 E-value=0.094 Score=45.59 Aligned_cols=70 Identities=20% Similarity=0.218 Sum_probs=44.3
Q ss_pred cCCCeEEEEEEEee-----CCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeC
Q psy16852 421 AQSPATLKATVTGR-----PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDG 495 (579)
Q Consensus 421 ~g~~~~l~C~~~g~-----p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~ 495 (579)
.++++.+.|.++.- ..-.+.|.+++..+-..++.
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t----------------------------------------- 68 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT----------------------------------------- 68 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-----------------------------------------
Confidence 57899999999731 23369999998877432211
Q ss_pred CeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 496 NRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 496 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
..+.|.+...+.- .|+|+|.|.+..-+....++|+-
T Consensus 69 n~aSL~~~f~~~l-~GNYTCEv~~l~n~gk~~IeLk~ 104 (286)
T PHA03042 69 NTSSLKFNFSKNL-SGNYTCEAINKFNKIKNTIELQY 104 (286)
T ss_pred cceEEEEeccccC-CCceeEEEeecccCccEEEEEEE
Confidence 0122444333222 69999999887666566666654
No 392
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=94.67 E-value=1.8 Score=36.88 Aligned_cols=103 Identities=13% Similarity=0.204 Sum_probs=52.6
Q ss_pred CeEEEEECCEEccCCCe---EEEEECC--CCeEEEEEc-ccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCee
Q psy16852 337 PLVTWSHDGTPMKEGKE---VTIYQDT--DGLCKLAIS-EVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKF 410 (579)
Q Consensus 337 ~~i~W~~~~~~~~~~~~---~~~~~~~--~~~~~l~i~-~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~ 410 (579)
..+.|+.||.++..... .....++ ...++|.+. +...+..-..+|.+.-.......+ .+.-...+..-.+|.+
T Consensus 7 ~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~-r~~a~~~P~Vy~~P~v 85 (211)
T PF02124_consen 7 VRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSET-RFNATATPSVYPKPRV 85 (211)
T ss_pred EEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeee-EeecccccceecCCEE
Confidence 36899999998875422 1222221 123556662 223333457999986433322211 1111111111123333
Q ss_pred ecCCCceeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEc
Q psy16852 411 TKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEI 448 (579)
Q Consensus 411 ~~~~~~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l 448 (579)
. ..+ +.-...|.+...|.. .+.|.-++...
T Consensus 86 s-----v~F---~~g~AVC~A~CVP~~~v~l~W~v~d~~~ 117 (211)
T PF02124_consen 86 S-----VRF---EDGYAVCTARCVPRGNVTLRWSVGDDPS 117 (211)
T ss_pred E-----EEe---cCCEEEEEcceeeCCCeEEEEEECCccC
Confidence 2 223 334556888877744 89999887654
No 393
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.63 E-value=0.052 Score=47.01 Aligned_cols=48 Identities=27% Similarity=0.337 Sum_probs=35.3
Q ss_pred CCCeeEEEEC-CEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852 34 PLPTMTWQKD-GTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI 84 (579)
Q Consensus 34 ~~~~v~W~~~-g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 84 (579)
..|.+.|..+ |+.+.......++ .++.|++.+...+++|.|+|..+..
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT---~TG~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNIT---ETGKLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEc---cCceEEeeccccccCCceEEEEEEE
Confidence 3578999875 5555555444443 3456999999999999999998653
No 394
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=94.32 E-value=0.47 Score=33.48 Aligned_cols=62 Identities=23% Similarity=0.426 Sum_probs=39.0
Q ss_pred EEEEEEEeeC-------CCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEE-EcCCeeeEEEEEEEE
Q psy16852 25 LFTCKVEGHP-------LPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA-TNIGGVATCSANLIV 96 (579)
Q Consensus 25 ~l~C~~~~~~-------~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~-~~~~g~~~~~~~~~v 96 (579)
.|+|..-+.. .+.+.|+-.+....... ..+.....+.+|+|.+.|.| .+..-.......+.|
T Consensus 9 ~l~~e~L~~tl~~~~~~~~~~~l~~~~~k~~~~~----------~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 9 VLPCEVLELTLEKPPGMKPSLFLENPGKKSLETK----------KLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEEEEESECEEETTTECEEEEEECSSCEEEEES----------SEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred EeeeeeEEEEEcCCCCCChhheeeccCccccccc----------eEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 4566653332 35788887766553332 34566778899999999999 554444455555544
No 395
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=94.25 E-value=0.39 Score=34.76 Aligned_cols=69 Identities=14% Similarity=0.345 Sum_probs=46.7
Q ss_pred ccCceeeeCCCCEEEEEEEEee-----CCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 12 KIQPVVSHQEQPALFTCKVEGH-----PLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 12 ~p~~~~v~~G~~~~l~C~~~~~-----~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
.|+...+..|++|+..|..... ....+.|..|+..++.+ .++ ......+.++|.+.....+-.|-|...
T Consensus 9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~-qy~-~in~~~SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGS-QYR-VINDTVSSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCG-CEE-EESTTEEEEEESS--SSEEEEEEEEEC
T ss_pred ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChh-Hcc-eeCCeEEEEEEccCCCCCceEEEEEEc
Confidence 3566678999999999998532 34579999999966544 333 334455888998888777777777643
No 396
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=94.24 E-value=0.18 Score=46.21 Aligned_cols=21 Identities=19% Similarity=0.580 Sum_probs=17.4
Q ss_pred CEEEEEEEEee-CC-CeeEEEEC
Q psy16852 23 PALFTCKVEGH-PL-PTMTWQKD 43 (579)
Q Consensus 23 ~~~l~C~~~~~-~~-~~v~W~~~ 43 (579)
.++|+|.|.|. |. ..+.|.||
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 58999999985 43 47999999
No 397
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.23 E-value=0.084 Score=45.79 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=25.8
Q ss_pred CCCeEEEeeCCEEcCCC-CCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852 435 PTPSICWYRGKEEILPD-NGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS 485 (579)
Q Consensus 435 p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 485 (579)
..|.+.|...+..+..+ .+..+. +. +.|.+.++.+.++|.|+|..+
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT---~T--G~L~~~~F~esmSG~YTCtLs 57 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNIT---ET--GKLMFKNFQESMSGSYTCTLS 57 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEc---cC--ceEEeeccccccCCceEEEEE
Confidence 45789999876554443 333332 22 235556666666555555544
No 398
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=94.14 E-value=0.41 Score=34.55 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=51.6
Q ss_pred cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeee
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA 88 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~ 88 (579)
+...|....|..|+++.+.|...-..+..+.|--.-. +........-..+.|.+++. | ..-.|.+.-.....
T Consensus 6 v~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~------k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~ 77 (91)
T PF03921_consen 6 VRVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLS------KTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQS 77 (91)
T ss_dssp EEEESSEEEEETTEEEEEEEEESSSS-SEEEEESSSE------EEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEEE
T ss_pred EEEECCccEECCCCCEEEEEcCCCCCCCcceEEEecC------CcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeEE
Confidence 3457899999999999999998533232455532111 11112223346788888886 4 56689887554455
Q ss_pred EEEEEEEEEecc
Q psy16852 89 TCSANLIVLEKE 100 (579)
Q Consensus 89 ~~~~~~~v~~~~ 100 (579)
..+..|+|+..|
T Consensus 78 ~~~~~ItVY~~P 89 (91)
T PF03921_consen 78 SASANITVYKPP 89 (91)
T ss_dssp EEEEEEEEEB--
T ss_pred EeEEeeEEeCCC
Confidence 667888887543
No 399
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=94.03 E-value=5.2 Score=37.31 Aligned_cols=75 Identities=16% Similarity=0.134 Sum_probs=49.4
Q ss_pred CeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCC-eEEEEEEEee--CCCe
Q psy16852 362 GLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSP-ATLKATVTGR--PTPS 438 (579)
Q Consensus 362 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~-~~l~C~~~g~--p~~~ 438 (579)
..++|+|..+.-+.+|=|+|+|....-......-|.|.... +. ....+|+. ....|-+-.. .+++
T Consensus 344 k~STLTIkka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V-------~f-----~W~~e~~n~T~V~Cyv~sy~~kp~s 411 (500)
T PHA02914 344 KNSTLTIKKAHINNAGCYEAQAFMGKFKEECRHCFKVADHV-------FF-----KWNTEGDNETKVACYAAQYDMQPFS 411 (500)
T ss_pred hhceEEeeeEEEEcCCceEEEEecCcchhhhhhheEeccEE-------EE-----EEEeccCceEEEEEEEEecccCCce
Confidence 45799999999999999999998765555555555554310 10 11224444 3567877544 4558
Q ss_pred EEEeeCCEEc
Q psy16852 439 ICWYRGKEEI 448 (579)
Q Consensus 439 v~W~~~~~~l 448 (579)
+.|.-+|-..
T Consensus 412 i~wkvnGV~~ 421 (500)
T PHA02914 412 ILWKSNGVSF 421 (500)
T ss_pred eEEEEccEEe
Confidence 9999988654
No 400
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=93.98 E-value=0.55 Score=34.58 Aligned_cols=93 Identities=18% Similarity=0.355 Sum_probs=51.7
Q ss_pred EEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCC--eEEEEECCEEccC---CCeEEEEECCCCeEEEEEcccC
Q psy16852 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTP--LVTWSHDGTPMKE---GKEVTIYQDTDGLCKLAISEVF 372 (579)
Q Consensus 298 v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~--~i~W~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~ 372 (579)
|....|.++.|...-..-...++.|... ....+.. .++|..+..+... +.++... ..+. .|.|+.++
T Consensus 8 VvgiSG~pl~LrP~~~Qtk~~sv~WK~~-----l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~-~enl--aLlIkaAq 79 (108)
T PF11465_consen 8 VVGISGKPLQLRPSNIQTKVYSVQWKMQ-----LPSQKKFEVILTWKNDSTPSYNSSFNNRFNFT-SENL--ALLIKAAQ 79 (108)
T ss_dssp EEEETTS-EEE--SS---SSEEEEEEEE-----ETSSSEEE-EEEEETTEEEESSTTHHHHEEEE-TTTT--EEEESS-S
T ss_pred eEEccCCEEEECCCCccceeEEEEEEEE-----cccCCceEEEEEEcCCCcccccccccceEeee-ccCc--eEEEeecC
Confidence 3445677777765544444456777542 1233333 3677655554433 2333332 2333 89999999
Q ss_pred CCCCEEEEEEEEcCceeEEEEEEEEEE
Q psy16852 373 PENAGLYSCTAVNPVGEAVAAATLAVE 399 (579)
Q Consensus 373 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 399 (579)
..|+|.|.-.+++..|.. ....+.|.
T Consensus 80 ~qDSG~Y~LEvT~~sG~V-~~~~FqVs 105 (108)
T PF11465_consen 80 PQDSGLYCLEVTNESGKV-CTKNFQVS 105 (108)
T ss_dssp GGG-EEEEEEEEETTSCE-EEEEEEEE
T ss_pred cccCceEEEEEEcCCCcE-EEEEEEEE
Confidence 999999999999998866 44444443
No 401
>PHA03042 CD47-like protein; Provisional
Probab=93.97 E-value=0.33 Score=42.37 Aligned_cols=61 Identities=20% Similarity=0.318 Sum_probs=41.8
Q ss_pred CCCCeEEEEEEEEcc-----CCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCe
Q psy16852 224 PKDSTVTLEAEYTGT-----PTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAG 288 (579)
Q Consensus 224 ~~g~~~~l~C~~~~~-----p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g 288 (579)
.-++++.+.|.++.. ....++|.++++.+...+.. +.++|.+.. ...-.|+|+|+|.+...
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t---n~aSL~~~f-~~~l~GNYTCEv~~l~n 94 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT---NTSSLKFNF-SKNLSGNYTCEAINKFN 94 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC---cceEEEEec-cccCCCceeEEEeeccc
Confidence 347899999998742 24479999999887654422 334565543 34458999999986543
No 402
>PHA03283 envelope glycoprotein E; Provisional
Probab=93.87 E-value=6.9 Score=38.15 Aligned_cols=81 Identities=14% Similarity=0.181 Sum_probs=52.9
Q ss_pred EEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCC--CCCeee-------------cCCCceeeecCCCeEEE
Q psy16852 364 CKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESG--EAPKFT-------------KPLKPVIAEAQSPATLK 428 (579)
Q Consensus 364 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~--~~p~~~-------------~~~~~~~~~~g~~~~l~ 428 (579)
..|.|.+++.+++|.|+-...+..+.....+.|.|+...... .||... ..-.......|+++.|.
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~ls 213 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDLS 213 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeEe
Confidence 379999999999999999999887755556677776632211 112111 01122447789999887
Q ss_pred EEEEeeC--C---CeEEEeeC
Q psy16852 429 ATVTGRP--T---PSICWYRG 444 (579)
Q Consensus 429 C~~~g~p--~---~~v~W~~~ 444 (579)
-...... . .++.|++-
T Consensus 214 i~l~s~~~d~~fs~~i~Wyy~ 234 (542)
T PHA03283 214 VHLESDIGDPSFSATIDWYYM 234 (542)
T ss_pred EEEeeccCCCCceEEEEEEEe
Confidence 7665422 2 27999983
No 403
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=93.84 E-value=3.5 Score=35.17 Aligned_cols=132 Identities=16% Similarity=0.235 Sum_probs=64.7
Q ss_pred eEEEEECCEEeccCce------EEe---CCeEEEEE-cccCCCCCeEEEEEEEcCCe---eeEEEEEEEEEeccceeeee
Q psy16852 242 EVKWFKNGKEIVSKDI------ETK---DNVTKLVI-KQTTKKTTGKYEIRVVNEAG---EARTSGSVTITVAEAETVMM 308 (579)
Q Consensus 242 ~v~W~~~~~~i~~~~~------~~~---~~~~~l~i-~~~~~~d~G~y~C~a~n~~g---~~~~~~~~~v~~~~~~~~~l 308 (579)
.++|+.||.++..... ... ...++|++ .+......=..+|.+.-... ....+..+.-.+...+.+.+
T Consensus 8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vsv 87 (211)
T PF02124_consen 8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVSV 87 (211)
T ss_pred EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEEE
Confidence 6899999998875441 111 12345555 22233344578999853222 12223333333444444444
Q ss_pred eeeeeccccCceeeeecCeeEEEeeeCC--CeEEEEECCEEccCCCeEEEEEC-CCCeEEEEEcccC--CCCCE--EEEE
Q psy16852 309 DVRVESHPTASFQWFIHSEPVVVTGKPT--PLVTWSHDGTPMKEGKEVTIYQD-TDGLCKLAISEVF--PENAG--LYSC 381 (579)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~g~p~--~~i~W~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~--~~d~G--~Y~C 381 (579)
.. .....-|.+..-|. ..+.|.-++.............. .+......|.... ....| .|+|
T Consensus 88 ~F------------~~g~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC 155 (211)
T PF02124_consen 88 RF------------EDGYAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTC 155 (211)
T ss_pred Ee------------cCCEEEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccCCceeEEE
Confidence 22 11222366666663 58999988776432222222110 0111133443332 23445 8999
Q ss_pred EEEc
Q psy16852 382 TAVN 385 (579)
Q Consensus 382 ~a~n 385 (579)
.+..
T Consensus 156 ~l~G 159 (211)
T PF02124_consen 156 RLIG 159 (211)
T ss_pred EEee
Confidence 9853
No 404
>PHA03189 UL14 tegument protein; Provisional
Probab=93.83 E-value=0.54 Score=41.62 Aligned_cols=86 Identities=17% Similarity=0.306 Sum_probs=50.7
Q ss_pred cCceeeeCCCCEEEEEEEEeeCCC--e--eEEEE-------------CCEEecCC-------CCEEEEEeCCEEEEEEc-
Q psy16852 13 IQPVVSHQEQPALFTCKVEGHPLP--T--MTWQK-------------DGTELHAT-------EHYLITTVESVSTLEII- 67 (579)
Q Consensus 13 p~~~~v~~G~~~~l~C~~~~~~~~--~--v~W~~-------------~g~~~~~~-------~~~~~~~~~~~~~L~i~- 67 (579)
|.+..+..|+.|++.|.+....-| . ++.-+ +|.++..+ ...+++..+....|++.
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF 138 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF 138 (348)
T ss_pred CCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE
Confidence 677889999999999998544322 2 22211 22222111 22333333334555555
Q ss_pred CCCCCCCEEEEEEEEcCCeeeEEEEEEEEEe
Q psy16852 68 NPTKEDIGVYTCKATNIGGVATCSANLIVLE 98 (579)
Q Consensus 68 ~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~ 98 (579)
++..+-+|.|.|...|..........++|.+
T Consensus 139 ~v~t~taG~Y~CvLrN~tHglv~~rf~ivtd 169 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETHGLVLQRFVIVTD 169 (348)
T ss_pred EEEecccceEEEEeccccceeeeEEeeeeee
Confidence 6677789999999998765444444455543
No 405
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=93.40 E-value=0.73 Score=33.36 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=33.5
Q ss_pred eeeecCCCeEEEEEEEe-----eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCC
Q psy16852 417 VIAEAQSPATLKATVTG-----RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 476 (579)
Q Consensus 417 ~~~~~g~~~~l~C~~~g-----~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d 476 (579)
..+..|++++..|.+.- .....+.|..++..++.+....+ .++.+.+++.+.....
T Consensus 13 pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~i----n~~~SsVT~~~~~~~~ 73 (89)
T PF06328_consen 13 PVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVI----NDTVSSVTLPNLNPTG 73 (89)
T ss_dssp SEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEE----STTEEEEEESS--SSE
T ss_pred CEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHccee----CCeEEEEEEccCCCCC
Confidence 35778999999999862 24458999999996655443333 3444455555444444
No 406
>PHA03052 Hypothetical protein; Provisional
Probab=92.06 E-value=0.37 Score=31.79 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=29.1
Q ss_pred ccCceeeeCCCCEEEEEEEEee---CCCeeEEEECCEEe
Q psy16852 12 KIQPVVSHQEQPALFTCKVEGH---PLPTMTWQKDGTEL 47 (579)
Q Consensus 12 ~p~~~~v~~G~~~~l~C~~~~~---~~~~v~W~~~g~~~ 47 (579)
.|+.+.+.-|..++|.|++.-. ..+.+.|.-|+..+
T Consensus 3 ~P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 3 LPEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred CCccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 3577889999999999999532 24579999999887
No 407
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=92.04 E-value=2 Score=31.19 Aligned_cols=74 Identities=18% Similarity=0.142 Sum_probs=45.9
Q ss_pred CCCccccccCceeeeCC----CCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy16852 5 LAPRFIEKIQPVVSHQE----QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCK 80 (579)
Q Consensus 5 ~~p~~~~~p~~~~v~~G----~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 80 (579)
-+|+|+.+++...+... +...|.+++.+. ...+.||.||+.+...... ..+.+. ....|.|+-.
T Consensus 9 ~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~--------~~~~~~---~~~~G~h~l~ 76 (89)
T PF06832_consen 9 SPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQPG--------HQLFWQ---PDRPGEHTLT 76 (89)
T ss_pred CCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCCCC--------CeEEeC---CCCCeeEEEE
Confidence 46677766665333332 256666776655 3489999999999433221 223332 2458999998
Q ss_pred EEcCCeeeEE
Q psy16852 81 ATNIGGVATC 90 (579)
Q Consensus 81 ~~~~~g~~~~ 90 (579)
+.+..|....
T Consensus 77 vvD~~G~~~~ 86 (89)
T PF06832_consen 77 VVDAQGRSAS 86 (89)
T ss_pred EEcCCCCEEE
Confidence 8887775544
No 408
>PHA03281 envelope glycoprotein E; Provisional
Probab=91.80 E-value=11 Score=36.83 Aligned_cols=80 Identities=16% Similarity=0.221 Sum_probs=52.5
Q ss_pred EEEEcccCCCCCEEEEEEEEcCceeEEE-EEEEEEEecccC-CCCCeeecCC----------CceeeecCCCeEEEEEEE
Q psy16852 365 KLAISEVFPENAGLYSCTAVNPVGEAVA-AATLAVEEKEES-GEAPKFTKPL----------KPVIAEAQSPATLKATVT 432 (579)
Q Consensus 365 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~~~~-~~~p~~~~~~----------~~~~~~~g~~~~l~C~~~ 432 (579)
.|.|.+++..++|.|+-......|.... .+.|.|+...+. ...|.+...+ .......|+++.|.-...
T Consensus 299 vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~L~ 378 (642)
T PHA03281 299 VLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMHLQ 378 (642)
T ss_pred eeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEEEe
Confidence 7999999999999999998877675555 556666654311 1122222211 123467899998888765
Q ss_pred ee--CCC---eEEEeeC
Q psy16852 433 GR--PTP---SICWYRG 444 (579)
Q Consensus 433 g~--p~~---~v~W~~~ 444 (579)
.. ..+ ++.|++-
T Consensus 379 s~ihD~pFsleI~Wyy~ 395 (642)
T PHA03281 379 YKIHDAPFDLLLEWLYV 395 (642)
T ss_pred eeccCCCceeEEEEEEe
Confidence 33 333 8999973
No 409
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=91.43 E-value=2.6 Score=29.80 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=31.0
Q ss_pred CCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEE-EcCCeeeEEEEEEE
Q psy16852 240 TPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRV-VNEAGEARTSGSVT 297 (579)
Q Consensus 240 ~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a-~n~~g~~~~~~~~~ 297 (579)
.+.+.|.-.+..+.. ....+........|+|.+.|.| .+..-.......+.
T Consensus 26 ~~~~~l~~~~~k~~~-------~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~ 77 (80)
T PF05790_consen 26 KPSLFLENPGKKSLE-------TKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEIL 77 (80)
T ss_dssp CEEEEEECSSCEEEE-------ESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEE
T ss_pred ChhheeeccCccccc-------cceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEE
Confidence 346777766554422 1234566677789999999999 55554444444433
No 410
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=89.87 E-value=4.1 Score=29.61 Aligned_cols=42 Identities=14% Similarity=0.323 Sum_probs=27.6
Q ss_pred CCCeeecCCCceeeecC----CCeEEEEEEEeeCCCeEEEeeCCEEc
Q psy16852 406 EAPKFTKPLKPVIAEAQ----SPATLKATVTGRPTPSICWYRGKEEI 448 (579)
Q Consensus 406 ~~p~~~~~~~~~~~~~g----~~~~l~C~~~g~p~~~v~W~~~~~~l 448 (579)
.++.|+.+.....+... +...|.+.+.+. ...+.|+.||..+
T Consensus 9 ~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~ 54 (89)
T PF06832_consen 9 SPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPL 54 (89)
T ss_pred CCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEc
Confidence 35666655544333332 256777777766 5599999999999
No 411
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=89.28 E-value=2.6 Score=38.93 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=17.4
Q ss_pred CeEEEEEEEeeCCC--eEEEeeC
Q psy16852 424 PATLKATVTGRPTP--SICWYRG 444 (579)
Q Consensus 424 ~~~l~C~~~g~p~~--~v~W~~~ 444 (579)
.++|.|.|.|+-+. .+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999996444 7899999
No 412
>PHA03282 envelope glycoprotein E; Provisional
Probab=89.25 E-value=22 Score=34.31 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=23.0
Q ss_pred eeeeCCeeEEEEeecccccceeEEEEEEe
Q psy16852 491 IMTDGNRSVLLISKITRDQIGDVTCRAEN 519 (579)
Q Consensus 491 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 519 (579)
+..-...-.|.+.++..+++|.|.|++.-
T Consensus 326 L~~~~n~VdL~F~nAp~saSGLYVfVl~y 354 (540)
T PHA03282 326 LGWYGHTVNLQLRDASEASGGLYVCVVYV 354 (540)
T ss_pred ccccCCccceEecCCCcccCceEEEEEEE
Confidence 33334455899999999999999999863
No 413
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=89.11 E-value=3.8 Score=40.09 Aligned_cols=80 Identities=19% Similarity=0.287 Sum_probs=14.0
Q ss_pred EEEEcccCCCCCEEEEEEEEcCceeEEE-EEEEEEEecccC--CCCCe--ee----------cCCCceeeecCCCeEEEE
Q psy16852 365 KLAISEVFPENAGLYSCTAVNPVGEAVA-AATLAVEEKEES--GEAPK--FT----------KPLKPVIAEAQSPATLKA 429 (579)
Q Consensus 365 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~~~~--~~~p~--~~----------~~~~~~~~~~g~~~~l~C 429 (579)
.|.|.+++.+|+|.|+-.+.+..+.... .+.|.|...... ..+|. +. ..........|+++.|.-
T Consensus 90 ~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~~v 169 (439)
T PF02480_consen 90 GLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHLSV 169 (439)
T ss_dssp --------------------------------------------------------SEEEEEE--SEEE--TT--EE---
T ss_pred ceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEEeE
Confidence 6999999999999999999877665543 345666554332 12221 11 123334578899998888
Q ss_pred EEEee--C-CC---eEEEeeC
Q psy16852 430 TVTGR--P-TP---SICWYRG 444 (579)
Q Consensus 430 ~~~g~--p-~~---~v~W~~~ 444 (579)
.+... . .+ +|.|++-
T Consensus 170 ~l~~~~~d~~~f~~~i~W~~~ 190 (439)
T PF02480_consen 170 HLQSEAHDDPPFSLEIDWYYM 190 (439)
T ss_dssp EEEEEESSS--EEEEEEEEEE
T ss_pred EEEeccCCCCCeeEEEEEEEe
Confidence 76532 2 22 7899973
No 414
>PHA03282 envelope glycoprotein E; Provisional
Probab=87.87 E-value=4.4 Score=38.65 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.2
Q ss_pred eEEEEEcccCCCCCEEEEEEEEc
Q psy16852 363 LCKLAISEVFPENAGLYSCTAVN 385 (579)
Q Consensus 363 ~~~l~i~~~~~~d~G~Y~C~a~n 385 (579)
...|.|.++...++|.|.|++.-
T Consensus 332 ~VdL~F~nAp~saSGLYVfVl~y 354 (540)
T PHA03282 332 TVNLQLRDASEASGGLYVCVVYV 354 (540)
T ss_pred ccceEecCCCcccCceEEEEEEE
Confidence 34799999999999999999963
No 415
>PHA03189 UL14 tegument protein; Provisional
Probab=85.64 E-value=15 Score=33.03 Aligned_cols=102 Identities=17% Similarity=0.193 Sum_probs=48.7
Q ss_pred CceeeecCCCeEEEEEEEe--eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852 415 KPVIAEAQSPATLKATVTG--RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM 492 (579)
Q Consensus 415 ~~~~~~~g~~~~l~C~~~g--~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~ 492 (579)
.+..+..|+.+++.|.+-. .|..+|.=.+-- .+...+.+..+...|.. | ...-+|...+...+..
T Consensus 60 AP~l~pyGdrvtVpC~fp~H~WPevsIrarfCy---s~e~s~eLv~da~~G~~-l---------~ndl~~~L~~~~W~Fe 126 (348)
T PHA03189 60 APLLVPYGDRVTVPCTFPTHDWPEVSIRARFCY---SPERSRELVVDADSGGE-L---------HNDLTYRLPEASWKFE 126 (348)
T ss_pred CccccCCCceeeeeeeecCCCCceeeEEEEEee---ccccceEEEEEcccCCE-e---------ccccceecccceeeee
Confidence 4455778999999999753 455544322210 01112222222211110 0 0011222333333333
Q ss_pred eeCCee--EEEEeecccccceeEEEEEEeC-CeeEEEEEEE
Q psy16852 493 TDGNRS--VLLISKITRDQIGDVTCRAENV-AGSVTCTATL 530 (579)
Q Consensus 493 ~~~~~~--~l~i~~~~~~d~G~Y~C~a~n~-~g~~~~~~~l 530 (579)
.-+... +|++ ++..+-+|.|.|+..|. +|-...++.|
T Consensus 127 dlg~aq~ltLtF-~v~t~taG~Y~CvLrN~tHglv~~rf~i 166 (348)
T PHA03189 127 DLGAAQRLTLTF-RVSTSTAGMYECVLRNETHGLVLQRFVI 166 (348)
T ss_pred cccceeEEEEEE-EEEecccceEEEEeccccceeeeEEeee
Confidence 333222 2444 34556699999999987 4555444444
No 416
>PHA03240 envelope glycoprotein M; Provisional
Probab=85.58 E-value=3.1 Score=34.82 Aligned_cols=104 Identities=17% Similarity=0.254 Sum_probs=52.8
Q ss_pred eeeecCCCeEEEEEEEeeCCCeEEEeeCCEE-c--CCCCCeeE-EEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852 417 VIAEAQSPATLKATVTGRPTPSICWYRGKEE-I--LPDNGHTM-EFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM 492 (579)
Q Consensus 417 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~-l--~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~ 492 (579)
+.+.+|++|+|.-.---.|.-.+.|++.... + ..+..+.+ .+++......-++.......--.|.|
T Consensus 33 vt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C---------- 102 (258)
T PHA03240 33 HTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYEC---------- 102 (258)
T ss_pred cccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEe----------
Confidence 4577899998876443356669999993211 1 01111111 11110000000111111122233444
Q ss_pred eeCCeeEEEEeecccccceeEEEEEEeCCeeE----EEEEEEEEe
Q psy16852 493 TDGNRSVLLISKITRDQIGDVTCRAENVAGSV----TCTATLSLL 533 (579)
Q Consensus 493 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~----~~~~~l~v~ 533 (579)
..++|.|-++..+|+|+|.-.--...|.. ....+|.|+
T Consensus 103 ---~NstL~i~~vn~sd~~nYcr~k~~~~g~~e~pt~sC~~l~~r 144 (258)
T PHA03240 103 ---HNSTLIIAHLNLSDAGEYCRKKCPPKGDCEFPTMSCFRLILR 144 (258)
T ss_pred ---ccceEEEEEEeecCcchhhhccCCCCCCcCCCcceeeeEeee
Confidence 46679999999999999954443334432 235677764
No 417
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=85.03 E-value=51 Score=34.16 Aligned_cols=284 Identities=14% Similarity=0.113 Sum_probs=132.7
Q ss_pred ccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEE--cCCce--e--EE
Q psy16852 118 EAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAV--NTFGR--A--EC 191 (579)
Q Consensus 118 ~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~--~~~~~--~--~~ 191 (579)
..|+.+.|.+.+.|.-...+.+.-.|..+.... . .....+.. .+..+|.|...+. ..... . ..
T Consensus 303 l~g~~I~ika~a~GG~~llYrf~I~G~~~e~~~-Y-------~~~n~~~w---~P~~~G~Y~I~v~VKDk~S~~eyD~~~ 371 (667)
T PRK14081 303 LTDTDIELKAVAEGGKELLYRFIIKGKESEDSG-Y-------IRNNIYTW---KPKIAGKYSITLWVKDISSKGEYEDKS 371 (667)
T ss_pred ecCceEEEEEEecCCCceEEEEEECCcEEeecc-c-------cccceEEE---eeCCCceEEEEEEEEcCcCcccccceE
Confidence 469999999999876666666655554432111 0 01112222 3346788877664 22111 1 12
Q ss_pred EEEEEEeeccccCCCCccCCCeE---eccCCceeeCCCCeEEEEEEEEccCCCeEE-E-EECCEEeccCceEEeCCeEEE
Q psy16852 192 RANLVLRKATTIDKPRVLEAPTI---VRPLQALLVPKDSTVTLEAEYTGTPTPEVK-W-FKNGKEIVSKDIETKDNVTKL 266 (579)
Q Consensus 192 ~~~~~v~~~~~~~~~~~~~~p~~---~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~-W-~~~~~~i~~~~~~~~~~~~~l 266 (579)
...+.+... ...|.. +..+.......|+++.+.+.+++.-...+. | .++|+.+.... ......+
T Consensus 372 ~v~f~i~~~--------~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~~---Y~~~~~~ 440 (667)
T PRK14081 372 SIDYTIEEK--------SKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKID---YGKNNWV 440 (667)
T ss_pred EEEEEEccc--------CCCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEee---cccccEE
Confidence 223333210 012221 111222345669999999999876555443 3 34777665422 2223334
Q ss_pred EEcccCCCCCeEEEEEEE--cCCeeeE--EEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEE-
Q psy16852 267 VIKQTTKKTTGKYEIRVV--NEAGEAR--TSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTW- 341 (579)
Q Consensus 267 ~i~~~~~~d~G~y~C~a~--n~~g~~~--~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W- 341 (579)
.+ .+..+|.|+-.+. +...... ....+.+.+.+..++.+...+......-+........+.+.|.-...+.+
T Consensus 441 ~f---~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~ 517 (667)
T PRK14081 441 NF---IPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYI 517 (667)
T ss_pred EE---EECCCeeEEEEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEE
Confidence 44 3467899988774 3222211 12233334444333322222111111111111111223333332222222
Q ss_pred -EECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCce------eEEEEEEEEEEecccCCCCCeeec--
Q psy16852 342 -SHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG------EAVAAATLAVEEKEESGEAPKFTK-- 412 (579)
Q Consensus 342 -~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g------~~~~~~~l~v~~~~~~~~~p~~~~-- 412 (579)
..+|.-+... +-.....+.+. +.-+|.|+..|.-... .+...+.+.|... .|....
T Consensus 518 ~~~NG~~v~~t-------~Ys~~~~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~-----~pi~nt~~ 582 (667)
T PRK14081 518 LKINGHKVEET-------DYIKNKKYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREA-----LPITNTKI 582 (667)
T ss_pred EEECCEEEEEe-------eccccceEEEe---ecCCceEEEEEEEcccccccccccceEEEEEEcCC-----CCceeeEE
Confidence 2344433111 11111134433 5778999988743222 3455667777752 222211
Q ss_pred CCCceeeecCCCeEEEEEEEeeCCCeEEE
Q psy16852 413 PLKPVIAEAQSPATLKATVTGRPTPSICW 441 (579)
Q Consensus 413 ~~~~~~~~~g~~~~l~C~~~g~p~~~v~W 441 (579)
......+..|+.++++....|.-..-++.
T Consensus 583 ~~~~~~~~~n~~~t~~~~~~gg~~v~Yef 611 (667)
T PRK14081 583 KTSKKKFKCNEEVTFSVKSEGGKDVCYEF 611 (667)
T ss_pred EeecceEEcCCeEEEEEEccCCCcEEEEE
Confidence 12334577788888888877665554443
No 418
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=84.50 E-value=3.2 Score=29.99 Aligned_cols=55 Identities=18% Similarity=0.375 Sum_probs=32.9
Q ss_pred EE-EeeeCCCeEEEEEC--CEEccCCCeEEEEECCCCe----EEEEEcccCCCCCEEEEEEEEcCce
Q psy16852 329 VV-VTGKPTPLVTWSHD--GTPMKEGKEVTIYQDTDGL----CKLAISEVFPENAGLYSCTAVNPVG 388 (579)
Q Consensus 329 ~~-~~g~p~~~i~W~~~--~~~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g 388 (579)
|. +.|.|++.|+|.-+ |.. ........+++ +.+.+-.....|.-..+|.+....-
T Consensus 27 CiSa~GrPpa~ItW~t~l~G~~-----etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~ 88 (98)
T cd05890 27 CVSANGKPPSVVRWDTRLKGEA-----EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRND 88 (98)
T ss_pred EEcCCCcCCcEeEEEccCCCce-----eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccc
Confidence 54 68899999999742 221 12222222332 3455555666677789999987533
No 419
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=84.25 E-value=13 Score=27.08 Aligned_cols=33 Identities=18% Similarity=0.143 Sum_probs=22.5
Q ss_pred eEEEEeecccccceeEEEEEEeCCeeEEEEEEE
Q psy16852 498 SVLLISKITRDQIGDVTCRAENVAGSVTCTATL 530 (579)
Q Consensus 498 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 530 (579)
+.+.+.+....|.-.-+|.+....-..+.++.|
T Consensus 64 S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L 96 (98)
T cd05890 64 SRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTL 96 (98)
T ss_pred EEEEEeECHHHcCCEeEEEEEeccccccccEEe
Confidence 337777788888888999988764444444444
No 420
>PHA03052 Hypothetical protein; Provisional
Probab=83.93 E-value=5.4 Score=26.58 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=27.3
Q ss_pred CceeeecCCCeEEEEEEE-e--eCCCeEEEeeCCEEcC
Q psy16852 415 KPVIAEAQSPATLKATVT-G--RPTPSICWYRGKEEIL 449 (579)
Q Consensus 415 ~~~~~~~g~~~~l~C~~~-g--~p~~~v~W~~~~~~l~ 449 (579)
....+..|..++|.|++. | ...+.|.|.-|+..+.
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 455688899999999986 3 2345799999998873
No 421
>PHA03283 envelope glycoprotein E; Provisional
Probab=83.75 E-value=13 Score=36.39 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=52.7
Q ss_pred CEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCC--Ccee-------------cCCCceEEccCCcEE
Q psy16852 60 SVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEA--PKFT-------------KPLKPVIAEAQSPAT 124 (579)
Q Consensus 60 ~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~--~~~~-------------~~~~~~~~~~g~~~~ 124 (579)
....|.|.+++.+++|.|+-...+..+.......|+|..++....+ +... ..-.......|+++.
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~ 211 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFD 211 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCcee
Confidence 3468999999999999999999887775555566666553222111 1110 011234457899988
Q ss_pred EEEEEEeec-----CCeEEEEEC
Q psy16852 125 LKATVTGRP-----TPSICWYRG 142 (579)
Q Consensus 125 l~C~~~~~p-----~~~i~W~~~ 142 (579)
+.-...... ...|.||+-
T Consensus 212 lsi~l~s~~~d~~fs~~i~Wyy~ 234 (542)
T PHA03283 212 LSVHLESDIGDPSFSATIDWYYM 234 (542)
T ss_pred EeEEEeeccCCCCceEEEEEEEe
Confidence 876654322 258889873
No 422
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=80.90 E-value=2.3 Score=41.54 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=0.0
Q ss_pred EEEEEcccCCCCCeEEEEEEEcCCeee
Q psy16852 264 TKLVIKQTTKKTTGKYEIRVVNEAGEA 290 (579)
Q Consensus 264 ~~l~i~~~~~~d~G~y~C~a~n~~g~~ 290 (579)
+.|.|.+++.+|+|.|+-...+..+..
T Consensus 89 ~~l~i~~a~~~~~GvY~l~~~~~~~~~ 115 (439)
T PF02480_consen 89 GGLSILNATEQDSGVYTLYVRNDSGWA 115 (439)
T ss_dssp ---------------------------
T ss_pred CceEEeccccccCeeEEEEecCCCCce
Confidence 569999999999999999887655443
No 423
>PHA03286 envelope glycoprotein E; Provisional
Probab=80.50 E-value=36 Score=32.72 Aligned_cols=79 Identities=18% Similarity=0.141 Sum_probs=51.5
Q ss_pred EEEEcccCCCCCEEEEEEEEcCceeEEEEE-EEEEEecccCCCCCeee--------------cCCCceeeecCCCeEEEE
Q psy16852 365 KLAISEVFPENAGLYSCTAVNPVGEAVAAA-TLAVEEKEESGEAPKFT--------------KPLKPVIAEAQSPATLKA 429 (579)
Q Consensus 365 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~-~l~v~~~~~~~~~p~~~--------------~~~~~~~~~~g~~~~l~C 429 (579)
.|.|.+++..++|.|+-...|..|....++ .|.|...... .+|... ..........|+++.|.-
T Consensus 128 ~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~-r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv 206 (492)
T PHA03286 128 ELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRA-RDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASV 206 (492)
T ss_pred ceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCC-CCCCcccCCCCcccceEEEEecccceEecCCCeEEEEE
Confidence 799999999999999999999877666554 5556433111 111111 122334577899998887
Q ss_pred EEEe--eCC---CeEEEeeC
Q psy16852 430 TVTG--RPT---PSICWYRG 444 (579)
Q Consensus 430 ~~~g--~p~---~~v~W~~~ 444 (579)
.... ... .++.|++-
T Consensus 207 ~l~~~~~d~~Fsl~i~W~y~ 226 (492)
T PHA03286 207 TAHLTNWAGAFSLEFRVLFL 226 (492)
T ss_pred EEeecccCCCceEEEEEEEe
Confidence 6652 112 28999983
No 424
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=79.21 E-value=22 Score=25.88 Aligned_cols=29 Identities=10% Similarity=0.158 Sum_probs=20.2
Q ss_pred CCceeeecCCCeEEEEEEEeeCCC-eEEEee
Q psy16852 414 LKPVIAEAQSPATLKATVTGRPTP-SICWYR 443 (579)
Q Consensus 414 ~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~ 443 (579)
+....+..|+++.++|+.+ -|.| .+-|.-
T Consensus 10 P~~~vV~~G~Sv~VNCSts-C~~p~~~GLET 39 (91)
T PF03921_consen 10 PEEPVVPPGGSVWVNCSTS-CPQPEKIGLET 39 (91)
T ss_dssp SSEEEEETTEEEEEEEEES-SSS-SEEEEES
T ss_pred CCccEECCCCCEEEEEcCC-CCCCCcceEEE
Confidence 3455688999999999986 3433 556643
No 425
>PHA03286 envelope glycoprotein E; Provisional
Probab=74.96 E-value=45 Score=32.14 Aligned_cols=82 Identities=15% Similarity=0.074 Sum_probs=50.0
Q ss_pred EEEEEEcCCCCCCCEEEEEEEEcCCeeeEE-EEEEEEEeccc----CCC---CCce------ecCCCceEEccCCcEEEE
Q psy16852 61 VSTLEIINPTKEDIGVYTCKATNIGGVATC-SANLIVLEKEE----SGE---APKF------TKPLKPVIAEAQSPATLK 126 (579)
Q Consensus 61 ~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~-~~~~~v~~~~~----~~~---~~~~------~~~~~~~~~~~g~~~~l~ 126 (579)
...|+|.+++..++|.|+-...|..|.... .+.++|..+.. ... .|.. ...........|+++.+.
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vS 205 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDAS 205 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEE
Confidence 467999999999999999999987765544 45556643311 111 1110 012233455778888777
Q ss_pred EEEEe-e----cCCeEEEEEC
Q psy16852 127 ATVTG-R----PTPSICWYRG 142 (579)
Q Consensus 127 C~~~~-~----p~~~i~W~~~ 142 (579)
-.... . -...|.|++-
T Consensus 206 v~l~~~~~d~~Fsl~i~W~y~ 226 (492)
T PHA03286 206 VTAHLTNWAGAFSLEFRVLFL 226 (492)
T ss_pred EEEeecccCCCceEEEEEEEe
Confidence 66541 1 1258888763
No 426
>KOG1026|consensus
Probab=71.98 E-value=6.2 Score=40.99 Aligned_cols=158 Identities=15% Similarity=0.147 Sum_probs=87.2
Q ss_pred ceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEE
Q psy16852 15 PVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANL 94 (579)
Q Consensus 15 ~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~ 94 (579)
...+..|..+++.|...+.+.+...|+.++............-. .....+.+ +.|.+.|..+.....+.+
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~--~~~~~~~~--------~~c~~E~~~~~~~~~v~~ 270 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCR--SECEVLEN--------DLCIAENAVARSNPSILL 270 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeecccccccCCCccccccc--ccceeeec--------hhhHHHHhhhhcCceeee
Confidence 46688999999999999999999999998766554322111000 11111111 899999988877777766
Q ss_pred EEEecccCCCCCceecCCCceEEccCCcEEEEEEE---EeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCC
Q psy16852 95 IVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV---TGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEAT 171 (579)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~---~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 171 (579)
.+..+. .......+. ++ .-.|.. .+.|.+...|..++..+.-........... . .=+......
T Consensus 271 ~~~~p~------~~~~~~~~~----~~--~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~-~-~C~~~~~~~ 336 (774)
T KOG1026|consen 271 VVDLPK------AEVLLCSPL----SD--HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGK-E-QCLPWNDPP 336 (774)
T ss_pred EEeccc------ccccCCCCc----cc--cCceeeeeccCCCCCceeeeecCccceEecccccccccC-c-CCcccCcCc
Confidence 665431 111100000 00 222332 245667888888766532211111111100 0 112222224
Q ss_pred CCCCeEEEEEEEcCCceeEEEEEEE
Q psy16852 172 PQDEAVYSVKAVNTFGRAECRANLV 196 (579)
Q Consensus 172 ~~d~G~Y~C~~~~~~~~~~~~~~~~ 196 (579)
-.+.|.|+|.+.+..|.........
T Consensus 337 h~~~~~~~~~~e~~~g~~~~r~~g~ 361 (774)
T KOG1026|consen 337 HSHNGNYTLFPELPGGKNYCRNPGG 361 (774)
T ss_pred ccccCcceeeecccCccccccCcCc
Confidence 5678999999998877765554433
No 427
>KOG1026|consensus
Probab=71.55 E-value=5.3 Score=41.48 Aligned_cols=163 Identities=17% Similarity=0.219 Sum_probs=90.0
Q ss_pred eeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceE-EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 221 LLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIE-TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299 (579)
Q Consensus 221 ~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~-~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~ 299 (579)
..+..+..+++.|...+.|-+...|+.++......... ..-......+.+ +.|.+.|..+....++.+.+.
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~--------~~c~~E~~~~~~~~~v~~~~~ 273 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSECEVLEN--------DLCIAENAVARSNPSILLVVD 273 (774)
T ss_pred hhhcccchheeeeecccCCCcceeeecccccccCCCcccccccccceeeec--------hhhHHHHhhhhcCceeeeEEe
Confidence 34667899999999999999999999876554432200 000011111111 889998888776655555444
Q ss_pred eccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEE
Q psy16852 300 VAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLY 379 (579)
Q Consensus 300 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 379 (579)
...- ..+.|..... ...-....+.+.|.+...|..++..+.............. --+......-.+.|.|
T Consensus 274 ~p~~--~~~~~~~~~~-------~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~-~C~~~~~~~h~~~~~~ 343 (774)
T KOG1026|consen 274 LPKA--EVLLCSPLSD-------HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKE-QCLPWNDPPHSHNGNY 343 (774)
T ss_pred cccc--cccCCCCccc-------cCceeeeeccCCCCCceeeeecCccceEecccccccccCc-CCcccCcCcccccCcc
Confidence 2211 1111211111 0000111234667778889888776543332222221110 0233333355678999
Q ss_pred EEEEEcCceeEEEEEEEEEEec
Q psy16852 380 SCTAVNPVGEAVAAATLAVEEK 401 (579)
Q Consensus 380 ~C~a~n~~g~~~~~~~l~v~~~ 401 (579)
+|.+.+..|.........+...
T Consensus 344 ~~~~e~~~g~~~~r~~g~~~~~ 365 (774)
T KOG1026|consen 344 TLFPELPGGKNYCRNPGGFMSR 365 (774)
T ss_pred eeeecccCccccccCcCccccC
Confidence 9999999887776666666553
No 428
>PHA03112 IL-18 binding protein; Provisional
Probab=70.53 E-value=18 Score=28.56 Aligned_cols=27 Identities=11% Similarity=0.364 Sum_probs=20.8
Q ss_pred eeCCCCEEEEEEEEee-CC-CeeEEEECC
Q psy16852 18 SHQEQPALFTCKVEGH-PL-PTMTWQKDG 44 (579)
Q Consensus 18 v~~G~~~~l~C~~~~~-~~-~~v~W~~~g 44 (579)
..+|+.+.|+|.+.+. |. ..+.|..++
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 3579999999999765 43 468999765
No 429
>PHA03240 envelope glycoprotein M; Provisional
Probab=68.72 E-value=5.6 Score=33.36 Aligned_cols=64 Identities=20% Similarity=0.212 Sum_probs=38.9
Q ss_pred ceeeeCCCCEEEEEEEEeeCCCeeEEEE--------CCE---Ee---cC--CC----------CEEEEEeCCEEEEEEcC
Q psy16852 15 PVVSHQEQPALFTCKVEGHPLPTMTWQK--------DGT---EL---HA--TE----------HYLITTVESVSTLEIIN 68 (579)
Q Consensus 15 ~~~v~~G~~~~l~C~~~~~~~~~v~W~~--------~g~---~~---~~--~~----------~~~~~~~~~~~~L~i~~ 68 (579)
++.+.+|++|+|.-.--..+.-.+.||+ +|. .+ .. .+ ...+...=.+++|.|.+
T Consensus 32 evt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~~ 111 (258)
T PHA03240 32 EHTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIAH 111 (258)
T ss_pred ecccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEEE
Confidence 4678899999997543223555899999 111 11 00 00 01111111357899999
Q ss_pred CCCCCCEEEE
Q psy16852 69 PTKEDIGVYT 78 (579)
Q Consensus 69 ~~~~d~G~Y~ 78 (579)
+..+|+|+|.
T Consensus 112 vn~sd~~nYc 121 (258)
T PHA03240 112 LNLSDAGEYC 121 (258)
T ss_pred EeecCcchhh
Confidence 9999999984
No 430
>KOG0200|consensus
Probab=67.09 E-value=34 Score=35.71 Aligned_cols=70 Identities=21% Similarity=0.268 Sum_probs=39.3
Q ss_pred EEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeec-CCCceeeecCCCeEEEEEEEeeCCCeEEEee
Q psy16852 365 KLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGRPTPSICWYR 443 (579)
Q Consensus 365 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~ 443 (579)
.+.+..+...+.|.|+|.+.| ......+. . .....+.+.. .+.......+....+ +...+.+.+.|.+
T Consensus 14 ~~~~~~~~~~~~~~y~~~~~~----~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 82 (609)
T KOG0200|consen 14 FLIIDSVVPGDKGFYTCLVSN----INLIISLD--D--IVIHRPILLAGENANPNTVVTVGVPL---AFSIPQPFIKWGT 82 (609)
T ss_pred eEEEEEEEecCCccEEEEEec----CceeeEee--c--ccCcccccccCCCCCcceeeccccee---eeecCCCcceeee
Confidence 677778888999999999998 11122222 1 1111222222 233334455666666 4334466788877
Q ss_pred CC
Q psy16852 444 GK 445 (579)
Q Consensus 444 ~~ 445 (579)
..
T Consensus 83 ~~ 84 (609)
T KOG0200|consen 83 NL 84 (609)
T ss_pred ee
Confidence 54
No 431
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=65.99 E-value=42 Score=23.36 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=18.0
Q ss_pred cCCCeEEEEEEEe-eCCCeEEEeeCCE
Q psy16852 421 AQSPATLKATVTG-RPTPSICWYRGKE 446 (579)
Q Consensus 421 ~g~~~~l~C~~~g-~p~~~v~W~~~~~ 446 (579)
.+..+.|.....+ .....+.|.+++.
T Consensus 13 ~~~~v~f~~~~~~~~~~~~~~W~fgdg 39 (79)
T smart00089 13 AGESVTFTATSSDDGSIVSYTWDFGDG 39 (79)
T ss_pred CCCEEEEEEECCCCCCeEEEEEEeCCC
Confidence 5778888887764 2345788887554
No 432
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=64.87 E-value=5.2 Score=39.82 Aligned_cols=75 Identities=16% Similarity=0.206 Sum_probs=0.0
Q ss_pred EEEEcc--cCCCCCEEEEEEEEcCce-eEEEEEEEEEEecccCCCCCeeecCCCc---eeeecCCCeEEEEEEEee----
Q psy16852 365 KLAISE--VFPENAGLYSCTAVNPVG-EAVAAATLAVEEKEESGEAPKFTKPLKP---VIAEAQSPATLKATVTGR---- 434 (579)
Q Consensus 365 ~l~i~~--~~~~d~G~Y~C~a~n~~g-~~~~~~~l~v~~~~~~~~~p~~~~~~~~---~~~~~g~~~~l~C~~~g~---- 434 (579)
.+.|.. +.......++..+....+ .......+.+... .+|.+...... ..+..++.+.|.....+.
T Consensus 149 ~l~i~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~----~~p~v~I~~~~n~~~~vn~~~~l~L~~~~~~~~~~~ 224 (440)
T PF02010_consen 149 SLTIPASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVVSG----DPPTVSISCVSNCKGKVNPSERLVLQASCSSCDSDS 224 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEhHHcCCCceEEEEEEEEeCCCCceeeEEEEEeccC----CCCceeEccccccccccCCCCCEEEEEEEeCCCCcC
Confidence 566643 333333444455544443 3334444544432 23443322211 237778888777655532
Q ss_pred CCCeEEEee
Q psy16852 435 PTPSICWYR 443 (579)
Q Consensus 435 p~~~v~W~~ 443 (579)
....+.|..
T Consensus 225 ~~~~y~Wsl 233 (440)
T PF02010_consen 225 SNVSYSWSL 233 (440)
T ss_dssp ---------
T ss_pred CCEEEEEEE
Confidence 234788887
No 433
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=63.68 E-value=20 Score=24.32 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=19.9
Q ss_pred eeecCCCeEEEEEEEeeCCCeEEEeeCC
Q psy16852 418 IAEAQSPATLKATVTGRPTPSICWYRGK 445 (579)
Q Consensus 418 ~~~~g~~~~l~C~~~g~p~~~v~W~~~~ 445 (579)
.+..|+.++|...........+.|.+++
T Consensus 7 ~~~~g~~v~f~~~~~~g~~~~y~W~fgd 34 (69)
T PF00801_consen 7 YVPTGQPVTFTASSSDGSPVTYSWDFGD 34 (69)
T ss_dssp CEBTTSEEEEEETTTTSSECEEEEE-SS
T ss_pred EEcCCCEEEEEEEccCCCCeEEEEEECC
Confidence 4667899999988732333489999987
No 434
>KOG0200|consensus
Probab=58.76 E-value=1.7e+02 Score=30.70 Aligned_cols=112 Identities=16% Similarity=0.029 Sum_probs=58.1
Q ss_pred EEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceec-CCCceEEccCCcEEEEEEEEeecCCeEEEE
Q psy16852 62 STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGRPTPSICWY 140 (579)
Q Consensus 62 ~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~ 140 (579)
..+.+..+...|.|.|+|.+.+ .. ....+.+.. ...+.+.. .+.......+....+ +...+.+.+.|.
T Consensus 13 ~~~~~~~~~~~~~~~y~~~~~~----~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 81 (609)
T KOG0200|consen 13 WFLIIDSVVPGDKGFYTCLVSN----IN--LIISLDDIV--IHRPILLAGENANPNTVVTVGVPL---AFSIPQPFIKWG 81 (609)
T ss_pred ceEEEEEEEecCCccEEEEEec----Cc--eeeEeeccc--CcccccccCCCCCcceeeccccee---eeecCCCcceee
Confidence 5678888889999999999987 11 111111110 11111111 122222334455555 222335677776
Q ss_pred ECCEEc----cCCCCc---------eEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852 141 RGKEEI----LPDNGH---------TMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184 (579)
Q Consensus 141 ~~~~~~----~~~~~~---------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 184 (579)
...... ...... ............+.+.++...+.|.|.|....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 138 (609)
T KOG0200|consen 82 TNLEIECEDGLFEYKTKKTLSFVEIEYNRLVDGTFESGLIYNVSLTEAGEYLCWTGR 138 (609)
T ss_pred eeecccccccCcchhheeeeeeeeccccccccCceEeeeeeccChhhcceeeccCCC
Confidence 643211 000000 00000022445788999999999999998876
No 435
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=58.50 E-value=54 Score=22.13 Aligned_cols=57 Identities=23% Similarity=0.390 Sum_probs=37.9
Q ss_pred eEEEEECCEEeccCceEEeC-CeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEE
Q psy16852 242 EVKWFKNGKEIVSKDIETKD-NVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298 (579)
Q Consensus 242 ~v~W~~~~~~i~~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v 298 (579)
...|+++++.+..-...... .-....-..+.....|.++..+....|..-....+.|
T Consensus 8 ~H~W~~~g~~~~~i~l~i~g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 8 YHRWYKNGKLVARIPLPISGGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEECCEEEEEEEEeccCCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 56899999887654432222 2234444555557899999999988887766666554
No 436
>PHA03281 envelope glycoprotein E; Provisional
Probab=56.67 E-value=1.2e+02 Score=30.12 Aligned_cols=82 Identities=13% Similarity=0.131 Sum_probs=49.4
Q ss_pred EEEEEEcCCCCCCCEEEEEEEEcCCeeeE-EEEEEEEEecccCCC-CCceecC----------CCceEEccCCcEEEEEE
Q psy16852 61 VSTLEIINPTKEDIGVYTCKATNIGGVAT-CSANLIVLEKEESGE-APKFTKP----------LKPVIAEAQSPATLKAT 128 (579)
Q Consensus 61 ~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~-~~~~~~v~~~~~~~~-~~~~~~~----------~~~~~~~~g~~~~l~C~ 128 (579)
.+.|.|.+++..++|.|+-......|... +.+.|+|..++.... .|.+... -.......|+++.+.-.
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~ 376 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMH 376 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEE
Confidence 35799999999999999988875555333 355566655431111 1111111 11234567888888777
Q ss_pred EEee--c---CCeEEEEEC
Q psy16852 129 VTGR--P---TPSICWYRG 142 (579)
Q Consensus 129 ~~~~--p---~~~i~W~~~ 142 (579)
.... . ...|.||+-
T Consensus 377 L~s~ihD~pFsleI~Wyy~ 395 (642)
T PHA03281 377 LQYKIHDAPFDLLLEWLYV 395 (642)
T ss_pred EeeeccCCCceeEEEEEEe
Confidence 6432 1 258888863
No 437
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=54.25 E-value=35 Score=23.06 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=22.0
Q ss_pred ceeeeCCCCEEEEEEEEeeCCCeeEEEECC
Q psy16852 15 PVVSHQEQPALFTCKVEGHPLPTMTWQKDG 44 (579)
Q Consensus 15 ~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g 44 (579)
+..+..|+.++|...........+.|..++
T Consensus 5 ~~~~~~g~~v~f~~~~~~g~~~~y~W~fgd 34 (69)
T PF00801_consen 5 PTYVPTGQPVTFTASSSDGSPVTYSWDFGD 34 (69)
T ss_dssp CSCEBTTSEEEEEETTTTSSECEEEEE-SS
T ss_pred CCEEcCCCEEEEEEEccCCCCeEEEEEECC
Confidence 455788999999998833334489999988
No 438
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=53.05 E-value=19 Score=35.88 Aligned_cols=75 Identities=13% Similarity=0.146 Sum_probs=0.0
Q ss_pred EEEEcccCCCCCEEEEE--EEEcCceeE-EEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEE--eeCCCeE
Q psy16852 365 KLAISEVFPENAGLYSC--TAVNPVGEA-VAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT--GRPTPSI 439 (579)
Q Consensus 365 ~l~i~~~~~~d~G~Y~C--~a~n~~g~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~--g~p~~~v 439 (579)
.|.|..-.....+.|.. .|.+..+.. .++..+.+..+| ....+...+..- ......+++.|.-- ...+..+
T Consensus 261 ~Lvi~~~~l~~g~~Y~~~l~v~~~~~~~~~a~~~~~~n~pP---~~g~c~v~P~~G-~al~T~Ft~~c~~~~d~~~pL~Y 336 (440)
T PF02010_consen 261 NLVIDPGVLEPGSTYTFRLTVTDSSGSSGSASISFTVNAPP---SGGSCSVSPSSG-YALETTFTITCSGWTDDDQPLTY 336 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccc---cccccccccccc-ccccccccccccccccccccccc
Confidence 56776554455555554 555554433 556666665422 111233222221 33346789999742 1223367
Q ss_pred EEee
Q psy16852 440 CWYR 443 (579)
Q Consensus 440 ~W~~ 443 (579)
.|+.
T Consensus 337 ~f~~ 340 (440)
T PF02010_consen 337 QFYY 340 (440)
T ss_dssp ----
T ss_pred cccc
Confidence 7766
No 439
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=50.52 E-value=42 Score=22.40 Aligned_cols=20 Identities=45% Similarity=0.821 Sum_probs=12.8
Q ss_pred CCCCeEEEEEEEEccCCCeEEEEE
Q psy16852 224 PKDSTVTLEAEYTGTPTPEVKWFK 247 (579)
Q Consensus 224 ~~g~~~~l~C~~~~~p~~~v~W~~ 247 (579)
..|+.++| .|.+...+.|++
T Consensus 3 ~~G~N~TL----~Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 3 TVGSNVTL----VGPPDGPVTWYK 22 (63)
T ss_pred eEcCcEEE----eCCCCCceEEEE
Confidence 44666666 444555789984
No 440
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=48.47 E-value=1.6e+02 Score=24.40 Aligned_cols=54 Identities=15% Similarity=0.213 Sum_probs=34.5
Q ss_pred eCCCeEEEEECCEEccCCCeEEEE-ECCCC-----eEEEEEcccCCCCCEEEEEEEEcCc
Q psy16852 334 KPTPLVTWSHDGTPMKEGKEVTIY-QDTDG-----LCKLAISEVFPENAGLYSCTAVNPV 387 (579)
Q Consensus 334 ~p~~~i~W~~~~~~~~~~~~~~~~-~~~~~-----~~~l~i~~~~~~d~G~Y~C~a~n~~ 387 (579)
..+|.++|.-+...+.++.-.... ....+ .+.+.+.+.+..++-.|.|.+....
T Consensus 120 ~s~PtitWsVgs~rl~n~gftqtwy~iqPGvCgilrS~v~~~R~~G~~~~~y~c~~~~~D 179 (226)
T PF05955_consen 120 VSQPTITWSVGSDRLRNDGFTQTWYGIQPGVCGILRSEVRIPRAEGRDNVDYLCEIRALD 179 (226)
T ss_pred cCCCeEEEEeccceeecCCccceeecccCcceeeEeeeeecccCCCCCcccEEecccccc
Confidence 356899998877777665433221 11111 2356677777778889999987654
No 441
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=46.99 E-value=95 Score=21.52 Aligned_cols=65 Identities=22% Similarity=0.283 Sum_probs=35.1
Q ss_pred eeCCCCEEEEEEEEe-eCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEE--EcCCeeeEEEEEE
Q psy16852 18 SHQEQPALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA--TNIGGVATCSANL 94 (579)
Q Consensus 18 v~~G~~~~l~C~~~~-~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~--~~~~g~~~~~~~~ 94 (579)
...|+.+.|.....+ .....+.|...+........ ... +-...|.|.-.+ .+..|.......+
T Consensus 11 ~~~~~~v~f~~~~~~~~~~~~~~W~fgdg~~~~~~~---------~~~-----~y~~~G~y~v~l~v~n~~g~~~~~~~i 76 (79)
T smart00089 11 GVAGESVTFTATSSDDGSIVSYTWDFGDGTSSTGPT---------VTH-----TYTKPGTYTVTLTVTNAVGSASATVTV 76 (79)
T ss_pred CCCCCEEEEEEECCCCCCeEEEEEEeCCCCccCCCC---------EEE-----EeCCCcEEEEEEEEEcCCCcEEEEEEE
Confidence 347889999988754 23457889774432211111 111 233578887654 4555644444444
Q ss_pred EE
Q psy16852 95 IV 96 (579)
Q Consensus 95 ~v 96 (579)
.|
T Consensus 77 ~v 78 (79)
T smart00089 77 VV 78 (79)
T ss_pred EE
Confidence 43
No 442
>PHA03112 IL-18 binding protein; Provisional
Probab=41.81 E-value=1.5e+02 Score=23.72 Aligned_cols=26 Identities=15% Similarity=0.376 Sum_probs=20.0
Q ss_pred ccCCcEEEEEEEEee-cC-CeEEEEECC
Q psy16852 118 EAQSPATLKATVTGR-PT-PSICWYRGK 143 (579)
Q Consensus 118 ~~g~~~~l~C~~~~~-p~-~~i~W~~~~ 143 (579)
.+++++.|+|.+-++ |. .-+.|..++
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 459999999998654 55 578898665
No 443
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=40.79 E-value=42 Score=22.30 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=15.5
Q ss_pred EEEEEEEeeCCCeEEEeeCCEEcC
Q psy16852 426 TLKATVTGRPTPSICWYRGKEEIL 449 (579)
Q Consensus 426 ~l~C~~~g~p~~~v~W~~~~~~l~ 449 (579)
+|+|...+.- -+.|+-||.++.
T Consensus 2 tltC~s~~sL--PiswYcN~TRLl 23 (71)
T PF11049_consen 2 TLTCPSNASL--PISWYCNGTRLL 23 (71)
T ss_pred ceecCCCCCC--cccEEECCceee
Confidence 5788765333 378999998773
No 444
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=40.24 E-value=60 Score=26.63 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=22.0
Q ss_pred EEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852 61 VSTLEIINPTKEDIGVYTCKATNIGG 86 (579)
Q Consensus 61 ~~~L~i~~~~~~d~G~Y~C~~~~~~g 86 (579)
..-|+|.+.+.+|+|.|.-++.-...
T Consensus 123 ~~lL~i~~p~~~dsG~Y~lRV~l~~~ 148 (161)
T PF01688_consen 123 GVLLRIRNPRPEDSGIYYLRVWLDGA 148 (161)
T ss_pred ceEEEeCCCCcccceEEEEEEEECCC
Confidence 45699999999999999999986543
No 445
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=35.06 E-value=35 Score=21.27 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=14.3
Q ss_pred ccccceeEEEEEEeCCeeE
Q psy16852 506 TRDQIGDVTCRAENVAGSV 524 (579)
Q Consensus 506 ~~~d~G~Y~C~a~n~~g~~ 524 (579)
-.+.+..|.|+++|..|..
T Consensus 6 lkdssnsflctvqnkng~~ 24 (65)
T PF13220_consen 6 LKDSSNSFLCTVQNKNGDQ 24 (65)
T ss_pred eecCCCceEEEEecccHhH
Confidence 3444678999999998853
No 446
>PF10572 UPF0556: Uncharacterised protein family UPF0556; InterPro: IPR018887 This family of proteins has no known function.
Probab=34.70 E-value=91 Score=25.21 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=28.7
Q ss_pred eeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCee
Q psy16852 478 AVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523 (579)
Q Consensus 478 g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 523 (579)
|.|+|...-.. ..|.+-.+.+.--..+|.+.|+|.+.-..|.
T Consensus 44 ~~~~C~FTYAa----qGGTNEqW~msi~~s~d~~~~sC~I~RPqgk 85 (158)
T PF10572_consen 44 GKYKCTFTYAA----QGGTNEQWQMSIGLSDDNGHYSCIIWRPQGK 85 (158)
T ss_pred CceEEEEEEEe----cCCccceEEEEeeecCCCCceEEEEECCCCC
Confidence 47888877432 2455555666555667889999999877663
No 447
>COG5475 Uncharacterized small protein [Function unknown]
Probab=27.98 E-value=1.5e+02 Score=19.05 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCCCEEEEEEEEcCCeee
Q psy16852 62 STLEIINPTKEDIGVYTCKATNIGGVA 88 (579)
Q Consensus 62 ~~L~i~~~~~~d~G~Y~C~~~~~~g~~ 88 (579)
-.+++..... .|.|.|+..+..|..
T Consensus 18 P~Mtvs~~ss--~Gmy~C~Wf~g~g~~ 42 (60)
T COG5475 18 PRMTVSGYSS--DGMYECRWFDGYGVK 42 (60)
T ss_pred ceEEEecccc--CCeEEEEEecCCCcc
Confidence 4556655554 399999999887733
No 448
>PHA02935 Hypothetical protein; Provisional
Probab=26.02 E-value=2.5e+02 Score=23.55 Aligned_cols=51 Identities=20% Similarity=0.207 Sum_probs=31.1
Q ss_pred eeEEEECCEEecCCCCEEE---------EEeCCEEEEEEcCCCCCCCEEEEEEEEcCCee
Q psy16852 37 TMTWQKDGTELHATEHYLI---------TTVESVSTLEIINPTKEDIGVYTCKATNIGGV 87 (579)
Q Consensus 37 ~v~W~~~g~~~~~~~~~~~---------~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~ 87 (579)
.-.||.+++.+.....-+. ...-.-.-|.|.+++-+|+|.|.=......|-
T Consensus 68 ytswyyndkvialatedrtsgyissfikrvnisltclnisslryedsgsykgvshlkdgv 127 (349)
T PHA02935 68 YTSWYYNDKVIALATEDRTSGYISSFIKRVNISLTCLNISSLRYEDSGSYKGVSHLKDGV 127 (349)
T ss_pred cceeeecCEEEEEeeccccccHHHHHHhhheeeEEEeeccceeeccCCcccCchhhcCce
Confidence 4679999987642211000 00011234778899999999998776655553
No 449
>PF03174 CHB_HEX_C: Chitobiase/beta-hexosaminidase C-terminal domain; InterPro: IPR004867 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This short domain is found in members of the glycoside hydrolase family 20 (GH20 from CAZY) and represents the C-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. It is composed of a beta sandwich structure []. The function of this domain is unknown. ; GO: 0004563 beta-N-acetylhexosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=25.98 E-value=1.4e+02 Score=20.67 Aligned_cols=65 Identities=20% Similarity=0.189 Sum_probs=28.5
Q ss_pred ccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEE
Q psy16852 12 KIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATC 90 (579)
Q Consensus 12 ~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~ 90 (579)
.|..-....+..|+|.|. .+...|.+-.||..-... +.+.-..+...+.|.+++.+....|..+.
T Consensus 6 sp~~G~~~~~~~v~l~~~---~~~~~I~YT~DGs~Pt~~-----------s~~Y~~Pi~i~~~~~vka~a~~~~g~~s~ 70 (75)
T PF03174_consen 6 SPPSGTYDEGQTVTLSSD---TPGATIYYTLDGSEPTKS-----------SPLYTGPITIPESGTVKARAFDNGGNVSE 70 (75)
T ss_dssp ----EEEEETTEEEEE-S---STTSEEEEESSSSSS---------------EE--CCC--B--S--EEEEE-TTS-B--
T ss_pred eCCCCcEecCeEEEEEeC---CCCCEEEEEcCCCccccc-----------CcccCcCEEeCCCcEEEEEEEcCCCCcCc
Confidence 344445666899999992 344467776676532111 22333456666777788888766654443
No 450
>PF03293 Pox_RNA_pol: Poxvirus DNA-directed RNA polymerase, 18 kD subunit; InterPro: IPR004973 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The Poxvirus DNA-directed RNA polymerase (2.7.7.6 from EC) catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. The enzyme consists of at least eight subunits, this is the 18 kDa subunit.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0019083 viral transcription
Probab=25.47 E-value=2.8e+02 Score=21.87 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=13.6
Q ss_pred EEEEEEEEeeCCCeeEEEECCEEec
Q psy16852 24 ALFTCKVEGHPLPTMTWQKDGTELH 48 (579)
Q Consensus 24 ~~l~C~~~~~~~~~v~W~~~g~~~~ 48 (579)
+.++|.+ ++..||+|..+.
T Consensus 68 v~VPC~v------tykyYk~GDvV~ 86 (160)
T PF03293_consen 68 VKVPCNV------TYKYYKVGDVVR 86 (160)
T ss_pred EEeeeEE------EEEEEeeCCEEE
Confidence 3456766 688999987664
No 451
>PF09085 Adhes-Ig_like: Adhesion molecule, immunoglobulin-like; InterPro: IPR015169 This domain is found in mucosal vascular addressin cell adhesion molecule 1 proteins (MAdCAM-1). These are cell adhesion molecules expressed on the endothelium in mucosa that guide the specific homing of lymphocytes into mucosal tissues. MAdCAM-1 belongs to a subclass of the immunoglobulin superfamily (IgSF), the members of which are ligands for integrins []. The crystal structure of this domain has been reported; it adopts an immunoglobulin-like beta-sandwich structure, with seven strands arranged in two beta-sheets in a Greek-key topology [, ].; GO: 0007155 cell adhesion, 0016020 membrane; PDB: 1GSM_A 1BQS_A.
Probab=24.43 E-value=1.5e+02 Score=21.67 Aligned_cols=42 Identities=7% Similarity=0.076 Sum_probs=25.3
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeC-----CCeeEEEECCEEecC
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHP-----LPTMTWQKDGTELHA 49 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~-----~~~v~W~~~g~~~~~ 49 (579)
|-+++..|. .+..|..-++.|.+..-. .-++.|+..++++..
T Consensus 3 PDqLtVSP~--~LVpg~dqevaCTAhnVtP~~p~~LSfslllGdqeLeg 49 (110)
T PF09085_consen 3 PDQLTVSPE--ALVPGRDQEVACTAHNVTPADPDALSFSLLLGDQELEG 49 (110)
T ss_dssp -SEEEEESS--SB-TT--SEEEEEEEEEB--STTTEEEEEEETTEE-TT
T ss_pred CcceeEChh--HhccCCCceeeeeeccccCCCCCeEEeeeeeCceeecc
Confidence 444555443 456899999999986432 127999999988743
No 452
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=24.01 E-value=4.2e+02 Score=22.02 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=20.6
Q ss_pred EEEEEEe-eCCCeEEEeeCCEEcCCCCCeeE
Q psy16852 427 LKATVTG-RPTPSICWYRGKEEILPDNGHTM 456 (579)
Q Consensus 427 l~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~ 456 (579)
-.|..+- ...|.++|..+..+|.+++-.++
T Consensus 112 AvCitseL~s~PtitWsVgs~rl~n~gftqt 142 (226)
T PF05955_consen 112 AVCITSELVSQPTITWSVGSDRLRNDGFTQT 142 (226)
T ss_pred EEEeeccccCCCeEEEEeccceeecCCccce
Confidence 3476643 56779999999888876654433
No 453
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=23.60 E-value=2.4e+02 Score=19.04 Aligned_cols=58 Identities=14% Similarity=0.290 Sum_probs=37.1
Q ss_pred eEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEE
Q psy16852 338 LVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398 (579)
Q Consensus 338 ~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 398 (579)
...|+++++.+..- .+...+..-.+..-..+.+...|.+++.+....|..-....+.|
T Consensus 8 ~H~W~~~g~~~~~i---~l~i~g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 8 YHRWYKNGKLVARI---PLPISGGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEECCEEEEEE---EEeccCCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 57899998865421 11111222224444555568899999999999888777766655
No 454
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=23.49 E-value=2.2e+02 Score=23.47 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=22.8
Q ss_pred eEEEEEcccCCCCCEEEEEEEEcCceeE
Q psy16852 363 LCKLAISEVFPENAGLYSCTAVNPVGEA 390 (579)
Q Consensus 363 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 390 (579)
...|.|.+.+.+|+|.|.-++.-.....
T Consensus 123 ~~lL~i~~p~~~dsG~Y~lRV~l~~~~~ 150 (161)
T PF01688_consen 123 GVLLRIRNPRPEDSGIYYLRVWLDGANK 150 (161)
T ss_pred ceEEEeCCCCcccceEEEEEEEECCCCC
Confidence 3479999999999999999997654433
No 455
>PF05566 Pox_vIL-18BP: Orthopoxvirus interleukin 18 binding protein; InterPro: IPR008791 Interleukin-18 (IL-18) is a proinflammatory cytokine that plays a key role in the activation of natural killer and T helper 1 cell responses principally by inducing interferon-gamma (IFN-gamma). Several poxvirus genes encode proteins with sequence similarity to IL-18BPs. It has been shown that vaccinia, ectromelia and cowpox viruses secrete from infected cells a soluble IL-18BP (vIL-18BP) that may modulate the host antiviral response. The expression of vIL-18BPs by distinct poxvirus genera that cause local or general viral dissemination, or persistent or acute infections in the host, emphasises the importance of IL-18 in response to viral infections [].; PDB: 3F62_A.
Probab=23.26 E-value=2.6e+02 Score=20.99 Aligned_cols=32 Identities=13% Similarity=0.087 Sum_probs=23.3
Q ss_pred EEEEcccCCCCCEEEEEEEEcCceeEEEEEEE
Q psy16852 365 KLAISEVFPENAGLYSCTAVNPVGEAVAAATL 396 (579)
Q Consensus 365 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 396 (579)
.|.+++...-+...++|+.....|-..+++.+
T Consensus 94 vL~vt~t~Kf~h~rfTCVL~t~DGvskk~iw~ 125 (126)
T PF05566_consen 94 VLHVTDTEKFAHYRFTCVLTTIDGVSKKNIWL 125 (126)
T ss_dssp EEEE--TTTTTTEEEEEEEEETTEEEEE----
T ss_pred eeeecchhhccceeEEEEEEcCCccccccccC
Confidence 58888888889999999999999988777654
No 456
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=21.09 E-value=3.3e+02 Score=19.68 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=25.5
Q ss_pred ccCceeeeCCCCEEEEEEEEeeC--C---CeeEEEECCEEe
Q psy16852 12 KIQPVVSHQEQPALFTCKVEGHP--L---PTMTWQKDGTEL 47 (579)
Q Consensus 12 ~p~~~~v~~G~~~~l~C~~~~~~--~---~~v~W~~~g~~~ 47 (579)
...+..+..|+.++|+..+.... . ..+.||.+|..+
T Consensus 9 ~~~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~ 49 (101)
T PF07705_consen 9 TVSPSNVVPGEPVTITVTVKNNGTADAENVTVRLYLDGNSV 49 (101)
T ss_dssp EEC-SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEE
T ss_pred eeCCCcccCCCEEEEEEEEEECCCCCCCCEEEEEEECCcee
Confidence 34556678899999999985432 1 268899998877
No 457
>PHA03290 envelope glycoprotein I; Provisional
Probab=21.00 E-value=2.2e+02 Score=26.43 Aligned_cols=39 Identities=21% Similarity=0.131 Sum_probs=27.8
Q ss_pred CEEEEEEcCCCCCCCEEEEEEEEcCCee--eEEEEEEEEEe
Q psy16852 60 SVSTLEIINPTKEDIGVYTCKATNIGGV--ATCSANLIVLE 98 (579)
Q Consensus 60 ~~~~L~i~~~~~~d~G~Y~C~~~~~~g~--~~~~~~~~v~~ 98 (579)
...-|+|.+.+.+|+|.|.-++.-.... .-....+.|..
T Consensus 127 ~~vLL~I~~P~~~DSGiY~LRV~Ldga~~sDvF~lsv~Vyp 167 (357)
T PHA03290 127 AEIIFKINKPGIEDAGIYLLLVQLDHSRLFDGFFLGLNVYP 167 (357)
T ss_pred cceEEEeCCCCcccCeeEEEEEEeCCCcccceEEEEEEEec
Confidence 4567999999999999999999865432 23344455543
Done!