Query psy16852
Match_columns 579
No_of_seqs 305 out of 2586
Neff 11.6
Searched_HMMs 29240
Date Fri Aug 16 23:43:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16852.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16852hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b43_A Titin; I-SET IG fold, e 100.0 2E-68 7E-73 545.1 65.6 506 4-578 3-511 (570)
2 3b43_A Titin; I-SET IG fold, e 100.0 1.2E-61 4.2E-66 495.1 61.2 466 4-533 99-569 (570)
3 1e07_A Carcinoembryonic antige 100.0 3.7E-57 1.2E-61 470.6 53.7 508 9-578 2-593 (642)
4 3dmk_A DOWN syndrome cell adhe 100.0 8.4E-56 2.9E-60 473.2 46.2 483 6-578 246-748 (816)
5 1e07_A Carcinoembryonic antige 100.0 2.5E-53 8.7E-58 441.7 53.1 474 6-533 112-639 (642)
6 3dmk_A DOWN syndrome cell adhe 100.0 2E-52 6.9E-57 447.1 50.4 460 6-533 343-808 (816)
7 2ec8_A MAST/stem cell growth f 100.0 1.3E-52 4.4E-57 425.5 31.0 460 2-533 32-509 (524)
8 3qs9_E FL cytokine receptor; i 100.0 5.6E-51 1.9E-55 408.0 40.9 445 12-533 54-509 (527)
9 2ocw_A Polymeric-immunoglobuli 100.0 1.2E-49 4.1E-54 409.8 50.4 462 10-535 4-547 (585)
10 2rcj_C Light chain; immunoglob 100.0 1.2E-49 4.2E-54 403.5 42.5 467 9-523 3-513 (523)
11 1z7z_I Intercellular adhesion 100.0 4.7E-50 1.6E-54 398.9 33.6 426 9-533 2-448 (450)
12 3v2a_R Vascular endothelial gr 100.0 2.6E-51 9E-56 436.8 10.7 462 8-538 225-760 (772)
13 3v2a_R Vascular endothelial gr 100.0 2E-50 6.9E-55 430.0 16.2 515 12-578 132-700 (772)
14 3kld_A Contactin 4, axcam, BIG 100.0 3.9E-46 1.3E-50 361.6 36.0 369 4-533 3-382 (384)
15 1cs6_A Axonin-1; neural cell a 100.0 1.4E-44 4.8E-49 351.6 38.2 369 3-533 1-381 (382)
16 3laf_A Deleted in colorectal c 100.0 1.3E-43 4.5E-48 347.6 40.7 370 105-533 21-400 (403)
17 3qs7_E FL cytokine receptor; i 100.0 4.4E-44 1.5E-48 348.9 33.9 390 71-533 4-413 (423)
18 1bih_A Hemolin; insect immunit 100.0 1.3E-43 4.5E-48 346.6 34.4 378 2-532 2-394 (395)
19 3p3y_A Neurofascin; IG domains 100.0 5.5E-44 1.9E-48 350.5 29.9 374 4-533 14-402 (404)
20 3qs9_E FL cytokine receptor; i 100.0 7.2E-43 2.5E-47 349.3 35.8 376 114-578 57-441 (527)
21 2rcj_C Light chain; immunoglob 100.0 1.4E-42 4.8E-47 351.7 37.5 413 112-578 7-461 (523)
22 2ec8_A MAST/stem cell growth f 100.0 3.2E-44 1.1E-48 363.8 24.8 406 85-579 22-441 (524)
23 3laf_A Deleted in colorectal c 100.0 2E-42 7E-47 339.1 35.7 371 5-400 20-401 (403)
24 2ocw_A Polymeric-immunoglobuli 100.0 4.7E-41 1.6E-45 345.8 41.4 402 111-578 6-480 (585)
25 2v5m_A Dscam; neurobiology SPL 100.0 3.9E-42 1.3E-46 335.2 31.2 357 105-532 3-387 (388)
26 3qs7_E FL cytokine receptor; i 100.0 2.1E-41 7.1E-46 330.1 33.2 357 7-402 49-416 (423)
27 2v5m_A Dscam; neurobiology SPL 100.0 3.4E-41 1.2E-45 328.6 29.5 358 6-398 3-387 (388)
28 2rik_A Titin; I-SET IG fold, p 100.0 1E-38 3.6E-43 296.7 41.0 277 3-298 2-282 (284)
29 1z7z_I Intercellular adhesion 100.0 1.6E-40 5.3E-45 330.3 27.7 369 111-578 5-404 (450)
30 1qgc_4 Protein (immunoglobulin 100.0 1.9E-39 6.5E-44 321.6 27.1 396 8-531 3-436 (438)
31 2rik_A Titin; I-SET IG fold, p 100.0 8.4E-36 2.9E-40 277.1 40.6 278 209-533 3-283 (284)
32 1wio_A CD4, T-cell surface gly 100.0 1.6E-38 5.5E-43 306.1 19.0 318 115-533 4-362 (363)
33 1wio_A CD4, T-cell surface gly 100.0 2.9E-39 1E-43 311.3 13.7 312 15-398 3-361 (363)
34 2yd9_A Receptor-type tyrosine- 100.0 1.7E-36 5.9E-41 284.5 30.8 281 4-299 4-290 (304)
35 1qz1_A Neural cell adhesion mo 100.0 5.1E-35 1.7E-39 272.9 34.3 276 6-299 2-289 (291)
36 2wim_A N-CAM 2, NCAM2, neural 100.0 2.2E-35 7.4E-40 275.4 31.3 278 5-301 3-285 (291)
37 3kld_A Contactin 4, axcam, BIG 100.0 2.9E-35 1E-39 285.2 27.9 307 212-578 6-329 (384)
38 2y25_A Myomesin; structural pr 100.0 5.5E-36 1.9E-40 283.3 20.6 289 1-300 2-315 (317)
39 1igt_B IGG2A intact antibody - 100.0 1E-34 3.5E-39 287.6 25.6 372 10-388 4-433 (444)
40 2yd9_A Receptor-type tyrosine- 100.0 1.8E-33 6.1E-38 263.9 32.0 281 104-533 5-290 (304)
41 2y25_A Myomesin; structural pr 100.0 6.3E-34 2.1E-38 269.1 28.4 279 209-533 5-314 (317)
42 1igt_B IGG2A intact antibody - 100.0 5.2E-34 1.8E-38 282.5 27.5 366 113-522 8-433 (444)
43 1cs6_A Axonin-1; neural cell a 100.0 5.4E-34 1.8E-38 277.0 26.1 306 211-578 4-328 (382)
44 1bih_A Hemolin; insect immunit 100.0 2.6E-34 8.8E-39 280.7 23.0 317 208-578 3-343 (395)
45 2y23_A Myomesin; structural pr 100.0 2E-33 6.7E-38 265.1 26.6 282 13-298 8-310 (312)
46 1hzh_H IGG, immunoglobulin hea 100.0 7.7E-34 2.6E-38 282.2 23.6 370 10-388 4-442 (457)
47 3p3y_A Neurofascin; IG domains 100.0 5.6E-34 1.9E-38 279.3 22.3 314 209-578 14-346 (404)
48 1iga_A IGA1; immunoglobulin; N 100.0 1.6E-31 5.6E-36 266.5 36.3 369 111-524 7-444 (475)
49 1hzh_H IGG, immunoglobulin hea 100.0 1.3E-32 4.5E-37 273.3 27.1 368 112-523 7-443 (457)
50 2wim_A N-CAM 2, NCAM2, neural 100.0 3.9E-32 1.3E-36 253.3 28.3 271 210-533 3-283 (291)
51 1qz1_A Neural cell adhesion mo 100.0 1.3E-31 4.3E-36 249.9 31.4 280 105-400 2-290 (291)
52 1ry7_B FGFR-3, fibroblast grow 100.0 3.9E-34 1.3E-38 272.5 12.0 287 3-303 6-330 (334)
53 1iga_A IGA1; immunoglobulin; N 100.0 6E-31 2.1E-35 262.4 34.8 370 9-389 4-443 (475)
54 1igy_B IGG1 intact antibody MA 100.0 3.5E-35 1.2E-39 289.8 1.0 372 10-388 3-423 (434)
55 3ejj_X Macrophage colony-stimu 100.0 1E-31 3.5E-36 250.3 23.5 269 5-299 3-280 (289)
56 2o26_X MAST/stem cell growth f 100.0 4.1E-32 1.4E-36 252.9 20.8 263 4-299 10-287 (290)
57 4fqp_A Poliovirus receptor; im 100.0 9.6E-32 3.3E-36 253.2 23.1 271 9-300 3-304 (313)
58 1igy_B IGG1 intact antibody MA 100.0 1.3E-34 4.6E-39 285.6 3.0 370 112-523 6-424 (434)
59 2jll_A NCAM2, neural cell adhe 100.0 2.6E-29 8.9E-34 244.6 40.1 360 6-393 1-378 (389)
60 3rjd_A High affinity immunoglo 100.0 1.9E-31 6.4E-36 244.6 22.6 250 6-298 1-258 (262)
61 3oq3_B IFN-alpha/beta binding 100.0 6.2E-32 2.1E-36 256.1 19.1 260 12-298 35-328 (329)
62 1qgc_4 Protein (immunoglobulin 100.0 1.9E-31 6.6E-36 264.0 22.6 344 108-578 4-379 (438)
63 1itb_B Type 1 interleukin-1 re 100.0 9.3E-33 3.2E-37 260.6 12.1 272 12-299 11-313 (315)
64 1zvo_C Myeloma immunoglobulin 100.0 4E-29 1.4E-33 250.5 38.3 377 11-399 5-504 (512)
65 1zvo_C Myeloma immunoglobulin 100.0 5.2E-29 1.8E-33 249.7 37.9 377 112-532 7-501 (512)
66 3o4o_C Interleukin-1 receptor 100.0 9.9E-33 3.4E-37 263.3 10.4 277 5-296 17-331 (339)
67 3u83_A Poliovirus receptor-rel 100.0 1E-31 3.4E-36 255.5 17.1 274 6-301 14-321 (331)
68 2wng_A Tyrosine-protein phosph 100.0 8.8E-31 3E-35 248.2 23.5 270 7-291 4-310 (327)
69 1ry7_B FGFR-3, fibroblast grow 100.0 1.4E-32 4.7E-37 261.8 11.1 286 218-533 15-326 (334)
70 2y23_A Myomesin; structural pr 100.0 4.1E-30 1.4E-34 242.3 27.3 267 221-533 11-311 (312)
71 4dep_C Interleukin-1 receptor 100.0 3.6E-31 1.2E-35 253.5 18.9 274 12-300 13-333 (349)
72 4fom_A Poliovirus receptor-rel 100.0 2.3E-31 7.9E-36 250.1 15.7 271 14-302 7-302 (308)
73 2o26_X MAST/stem cell growth f 100.0 2.2E-30 7.5E-35 241.1 21.9 268 210-533 11-287 (290)
74 4dkd_C Macrophage colony-stimu 100.0 7.4E-31 2.5E-35 244.8 17.1 269 5-300 3-281 (292)
75 4dep_C Interleukin-1 receptor 100.0 1.8E-30 6E-35 248.8 19.0 283 218-533 14-332 (349)
76 2jll_A NCAM2, neural cell adhe 100.0 5.4E-28 1.9E-32 235.3 36.8 274 107-400 3-288 (389)
77 2nzi_A Titin; IG-domain, FNIII 100.0 1E-28 3.5E-33 231.8 30.5 264 5-293 3-283 (305)
78 4fqp_A Poliovirus receptor; im 100.0 4.1E-30 1.4E-34 242.0 20.9 262 217-533 6-303 (313)
79 3ejj_X Macrophage colony-stimu 100.0 1.6E-29 5.6E-34 235.3 24.3 274 210-533 3-280 (289)
80 1itb_B Type 1 interleukin-1 re 100.0 1.5E-30 5E-35 245.5 15.9 279 220-533 14-313 (315)
81 3o4o_C Interleukin-1 receptor 100.0 3.7E-31 1.3E-35 252.4 11.5 289 210-533 17-334 (339)
82 4fom_A Poliovirus receptor-rel 100.0 1.3E-30 4.5E-35 244.9 15.0 264 220-533 8-299 (308)
83 2nzi_A Titin; IG-domain, FNIII 100.0 4E-28 1.4E-32 227.7 32.0 271 104-394 3-284 (305)
84 3rjd_A High affinity immunoglo 100.0 4.4E-29 1.5E-33 228.8 23.2 249 212-532 2-258 (262)
85 3oq3_B IFN-alpha/beta binding 100.0 4.3E-29 1.5E-33 236.5 23.5 268 219-532 37-328 (329)
86 3mjg_X Beta-type platelet-deri 100.0 5.1E-29 1.7E-33 231.8 23.2 266 7-303 1-281 (289)
87 2oz4_A Intercellular adhesion 100.0 3.1E-29 1.1E-33 229.8 21.3 239 14-299 11-263 (265)
88 3u83_A Poliovirus receptor-rel 100.0 1.5E-28 5E-33 233.7 25.7 274 107-533 16-319 (331)
89 3vh8_G Killer cell immunoglobu 100.0 9.6E-30 3.3E-34 239.7 15.6 263 3-289 21-297 (316)
90 2wng_A Tyrosine-protein phosph 100.0 8.8E-29 3E-33 234.5 21.0 274 213-527 5-312 (327)
91 2oz4_A Intercellular adhesion 100.0 2E-28 6.9E-33 224.4 22.0 236 222-533 14-263 (265)
92 3mjg_X Beta-type platelet-deri 100.0 1.6E-28 5.6E-33 228.4 17.8 269 217-534 6-278 (289)
93 4dkd_C Macrophage colony-stimu 100.0 2.3E-28 8E-33 227.9 16.7 274 210-534 3-281 (292)
94 2wqr_A IG epsilon chain C regi 100.0 2.5E-28 8.6E-33 230.6 16.0 278 3-289 4-309 (323)
95 2a38_A Titin; Z1Z2, structural 100.0 1.2E-26 4E-31 202.0 24.2 188 5-197 4-193 (194)
96 1za6_B IGG heavy chain; immuno 99.9 2.8E-27 9.7E-32 225.4 18.4 276 10-289 4-330 (344)
97 3vh8_G Killer cell immunoglobu 99.9 8.9E-28 3E-32 226.3 13.5 265 209-523 22-297 (316)
98 2j8h_A Titin, connectin; cardi 99.9 1.5E-25 5E-30 195.5 25.2 191 5-198 3-196 (197)
99 3lcy_A Titin; A-BAND, IG tande 99.9 2.3E-25 7.9E-30 194.3 25.8 190 4-198 5-195 (197)
100 3rbs_A Myomesin-1; immunoglobu 99.9 2.2E-26 7.6E-31 200.7 19.1 185 5-197 2-205 (207)
101 2yd6_A PTPRD protein; hydrolas 99.9 1.6E-25 5.3E-30 197.6 24.5 195 4-198 4-203 (212)
102 2yd1_A Tyrosine-protein phosph 99.9 2.8E-25 9.7E-30 196.0 25.4 190 4-198 4-199 (212)
103 2c5d_C AXL oncogene, tyrosine- 99.9 7.3E-25 2.5E-29 190.6 23.5 177 6-197 2-191 (195)
104 2wqr_A IG epsilon chain C regi 99.9 1.8E-25 6E-30 211.1 20.4 263 227-523 25-309 (323)
105 2wv3_A Neuroplastin; igcam, me 99.9 2.5E-24 8.6E-29 186.3 24.9 180 6-198 3-189 (190)
106 2v44_A NCAM2, neural cell adhe 99.9 2.2E-24 7.7E-29 186.5 23.7 181 8-198 4-186 (189)
107 2a38_A Titin; Z1Z2, structural 99.9 2.7E-24 9.1E-29 187.0 23.2 186 105-298 5-193 (194)
108 3rbs_A Myomesin-1; immunoglobu 99.9 1.1E-24 3.8E-29 189.9 20.3 180 295-532 9-205 (207)
109 1epf_A NCAM, protein (neural c 99.9 4.5E-24 1.6E-28 185.0 24.0 183 6-197 2-189 (191)
110 2j8h_A Titin, connectin; cardi 99.9 1E-23 3.4E-28 183.8 25.0 190 104-299 3-196 (197)
111 1rhf_A Tyrosine-protein kinase 99.9 3.6E-24 1.2E-28 184.0 21.0 174 6-196 2-180 (182)
112 4fa8_A Secreted protein BARF1; 99.9 7.4E-25 2.5E-29 189.7 16.7 171 15-191 2-194 (203)
113 2va4_A NCAM2, N-CAM 2, neural 99.9 8.3E-24 2.9E-28 183.6 22.9 183 6-197 2-191 (192)
114 2yd1_A Tyrosine-protein phosph 99.9 1.1E-23 3.8E-28 185.7 23.4 190 104-300 5-200 (212)
115 2iep_A Muscle-specific kinase 99.9 2.1E-24 7.3E-29 187.3 18.1 181 5-198 6-189 (192)
116 1za6_B IGG heavy chain; immuno 99.9 4.5E-25 1.5E-29 210.2 14.3 266 112-389 7-330 (344)
117 2r15_A Myomesin-1; sarcomeric 99.9 1.2E-23 4.1E-28 185.7 21.7 191 298-533 3-209 (212)
118 2v5t_A NCAM2, N-CAM 2, neural 99.9 4.5E-24 1.5E-28 184.7 18.4 182 6-198 2-187 (189)
119 4fa8_A Secreted protein BARF1; 99.9 9.2E-25 3.1E-29 189.1 13.9 175 298-526 3-194 (203)
120 2r15_A Myomesin-1; sarcomeric 99.9 9.9E-24 3.4E-28 186.3 20.0 180 18-198 14-209 (212)
121 2v9r_A Roundabout homolog 1; p 99.9 5E-24 1.7E-28 188.2 17.4 186 3-198 6-201 (212)
122 2yd6_A PTPRD protein; hydrolas 99.9 1.9E-22 6.5E-27 177.7 26.2 191 104-299 5-203 (212)
123 3ojm_B Fibroblast growth facto 99.9 1.3E-23 4.3E-28 188.4 18.2 193 4-198 13-220 (231)
124 2vr9_A Roundabout 1, ROBO; imm 99.9 5.6E-24 1.9E-28 188.6 15.5 187 3-197 6-204 (217)
125 3grw_A Fibroblast growth facto 99.9 1.9E-23 6.5E-28 188.5 19.1 192 5-198 10-217 (241)
126 2wv3_A Neuroplastin; igcam, me 99.9 3.5E-22 1.2E-26 172.7 26.3 175 105-299 3-189 (190)
127 2c5d_C AXL oncogene, tyrosine- 99.9 1.4E-22 4.9E-27 176.1 23.6 179 105-298 2-191 (195)
128 3lcy_A Titin; A-BAND, IG tande 99.9 2.7E-22 9.3E-27 174.8 24.3 182 105-299 7-195 (197)
129 3k0w_A Mucosa-associated lymph 99.9 5.2E-23 1.8E-27 182.1 19.2 174 5-198 17-201 (218)
130 2v5t_A NCAM2, N-CAM 2, neural 99.9 1.5E-22 5.1E-27 175.1 21.6 184 105-300 2-188 (189)
131 1epf_A NCAM, protein (neural c 99.9 1.5E-22 5.3E-27 175.3 21.0 182 106-299 3-190 (191)
132 1rhf_A Tyrosine-protein kinase 99.9 1.7E-22 5.7E-27 173.5 20.7 176 106-298 3-181 (182)
133 3s97_C Contactin-1; carbonic a 99.9 1.5E-23 5.3E-28 183.4 14.2 189 4-198 6-200 (201)
134 2iep_A Muscle-specific kinase 99.9 1.1E-22 3.8E-27 176.4 19.4 181 105-299 7-189 (192)
135 2va4_A NCAM2, N-CAM 2, neural 99.9 1E-21 3.5E-26 170.3 24.8 177 297-532 13-191 (192)
136 2v44_A NCAM2, neural cell adhe 99.9 5E-22 1.7E-26 171.7 21.8 178 109-300 6-187 (189)
137 1f97_A Junction adhesion molec 99.9 8.4E-23 2.9E-27 180.3 16.5 180 6-197 1-203 (212)
138 3p2t_A Leukocyte immunoglobuli 99.9 7.3E-23 2.5E-27 177.9 14.1 176 3-187 2-179 (196)
139 2d3v_A Leukocyte immunoglobuli 99.9 3E-23 1E-27 180.2 11.4 176 4-187 3-180 (196)
140 1fnl_A Low affinity immunoglob 99.9 1.2E-22 4E-27 172.9 13.2 158 2-188 3-162 (175)
141 3grw_A Fibroblast growth facto 99.9 9.9E-22 3.4E-26 177.2 18.8 174 329-533 37-217 (241)
142 3sgj_C Human FCG3A receptor; r 99.9 1.8E-22 6.2E-27 175.8 13.2 166 4-198 5-173 (204)
143 3mj8_L Stimulatory hamster ant 99.9 4.2E-22 1.5E-26 175.8 15.7 181 7-191 2-205 (213)
144 3bp6_B Programmed cell death 1 99.9 7E-22 2.4E-26 172.7 16.9 179 9-198 5-192 (202)
145 3ojm_B Fibroblast growth facto 99.9 1.5E-21 5E-26 174.9 19.4 175 329-533 41-220 (231)
146 1ugn_A LIR1, leukocyte immunog 99.9 4.9E-22 1.7E-26 172.9 15.8 177 3-187 2-181 (198)
147 4f80_A Butyrophilin subfamily 99.9 1.7E-21 5.8E-26 173.5 19.5 179 12-198 10-212 (226)
148 3b5h_A Cervical EMMPRIN, HAB18 99.9 1.9E-21 6.5E-26 167.2 18.9 167 16-198 8-182 (184)
149 2c1o_A IGK-C protein; FAB frag 99.9 2.5E-22 8.5E-27 182.5 13.8 205 69-290 11-245 (254)
150 2vr9_A Roundabout 1, ROBO; imm 99.9 1.7E-21 5.8E-26 172.5 18.1 185 104-298 8-204 (217)
151 1f2q_A High affinity immunoglo 99.9 2.8E-22 9.6E-27 170.8 12.0 156 4-188 2-159 (176)
152 1vca_A VCAM-D1,2, human vascul 99.9 8.5E-21 2.9E-25 164.9 21.5 170 9-188 3-179 (202)
153 2ifg_A High affinity nerve gro 99.9 4.5E-22 1.5E-26 189.5 13.8 182 5-198 157-344 (347)
154 3nl4_L Antigen binding fragmen 99.9 1.3E-21 4.4E-26 172.7 15.1 174 7-183 2-198 (213)
155 3jz7_A MCAR, CAR, coxsackievir 99.9 5.5E-22 1.9E-26 175.4 12.7 179 9-197 3-210 (214)
156 3d9a_L Light chain of hyhel10 99.9 9.1E-22 3.1E-26 173.7 13.8 179 8-189 3-203 (213)
157 1uct_A Immunoglobulin alpha FC 99.9 5.1E-22 1.7E-26 174.8 11.7 170 4-186 7-180 (218)
158 2fbo_J V1V2;, variable region- 99.9 9.4E-22 3.2E-26 178.5 13.6 172 9-187 5-237 (250)
159 2gi7_A GPVI protein; IG-like d 99.9 5.8E-22 2E-26 170.0 11.2 162 3-187 5-168 (184)
160 2x1w_L Vascular endothelial gr 99.9 2.2E-21 7.5E-26 170.8 15.0 180 11-198 12-206 (213)
161 1f97_A Junction adhesion molec 99.9 1.8E-21 6.3E-26 171.7 14.3 180 107-301 3-206 (212)
162 1nbq_A JAM, junctional adhesio 99.9 1.3E-22 4.5E-27 178.6 6.9 178 6-193 4-201 (209)
163 2v9r_A Roundabout homolog 1; p 99.9 1.4E-21 4.8E-26 172.4 12.9 185 105-299 9-201 (212)
164 3tv3_L PGT128 light chain, IG 99.9 2.5E-21 8.6E-26 170.5 14.2 180 7-191 2-203 (211)
165 1lk3_L 9D7 light chain; antige 99.9 3.6E-21 1.2E-25 169.3 15.2 178 8-189 3-202 (210)
166 3s97_C Contactin-1; carbonic a 99.9 9.8E-21 3.4E-25 165.4 17.8 186 109-299 12-200 (201)
167 1moe_A Anti-CEA MAB T84.66; an 99.9 8.6E-21 2.9E-25 170.8 17.6 178 7-184 2-219 (240)
168 3s96_B 3B5H10 FAB light chain; 99.9 5.2E-21 1.8E-25 169.5 15.8 180 7-190 2-211 (218)
169 3k0w_A Mucosa-associated lymph 99.9 1.7E-20 5.8E-25 165.9 19.0 170 104-290 17-191 (218)
170 1oll_A NK receptor; immune sys 99.9 1.7E-21 5.8E-26 167.7 12.1 169 4-186 2-172 (188)
171 3ry4_A Low affinity immunoglob 99.9 2.8E-21 9.7E-26 163.7 12.4 155 5-188 3-159 (170)
172 3sbw_C Programmed cell death 1 99.9 2.1E-20 7E-25 166.2 18.4 182 10-198 5-210 (222)
173 3r4d_A CEA-related cell adhesi 99.9 8.2E-21 2.8E-25 166.9 15.5 170 9-191 2-191 (208)
174 1q0x_L FAB 9B1, light chain; a 99.9 1.5E-20 5.1E-25 165.6 16.8 178 8-188 3-204 (212)
175 1mq8_A ICAM-1, intercellular a 99.9 3.6E-21 1.2E-25 174.5 13.0 259 9-299 2-281 (291)
176 2ghw_B Anti-SARS SCFV antibody 99.8 4.3E-20 1.5E-24 166.9 19.2 176 11-186 7-228 (247)
177 3auv_A SC-DSFV derived from th 99.8 2.7E-20 9.4E-25 170.9 17.9 180 6-185 12-235 (276)
178 4frw_A Poliovirus receptor-rel 99.8 6.7E-21 2.3E-25 168.9 13.2 182 11-198 4-210 (218)
179 3jz7_A MCAR, CAR, coxsackievir 99.8 2E-20 6.7E-25 165.3 15.9 191 297-533 9-211 (214)
180 3sob_L Antibody light chain; b 99.8 1.8E-20 6.3E-25 168.4 15.9 182 7-191 25-228 (237)
181 3sgj_C Human FCG3A receptor; r 99.8 1.3E-20 4.5E-25 164.0 14.3 163 106-299 8-173 (204)
182 1nfd_E H57 FAB; complex (immun 99.8 1.8E-21 6.3E-26 171.5 9.0 177 9-188 3-201 (212)
183 3mj6_A Junctional adhesion mol 99.8 3E-21 1E-25 177.1 10.7 181 7-198 6-236 (268)
184 2znx_A SCFV; fluorotryptohpan, 99.8 2.4E-20 8.3E-25 167.7 16.0 179 7-185 2-222 (242)
185 1hng_A CD2; T lymphocyte adhes 99.8 4.8E-21 1.6E-25 162.4 10.7 154 15-195 5-172 (176)
186 3r06_A Anti-mouse CD3epsilon a 99.8 2E-20 6.9E-25 165.0 15.1 179 7-188 2-202 (213)
187 2x1w_L Vascular endothelial gr 99.8 3.4E-20 1.2E-24 163.1 16.2 182 297-533 16-206 (213)
188 2c1o_A IGK-C protein; FAB frag 99.8 1.5E-20 5.2E-25 170.7 14.2 181 6-189 38-245 (254)
189 1hng_A CD2; T lymphocyte adhes 99.8 2.1E-20 7.1E-25 158.5 14.0 159 296-532 4-174 (176)
190 2ny1_B T-cell surface glycopro 99.8 3.7E-21 1.3E-25 165.3 9.6 159 14-198 3-178 (184)
191 3p2t_A Leukocyte immunoglobuli 99.8 4E-20 1.4E-24 160.5 16.1 169 105-288 5-179 (196)
192 1b6u_A KIR2DL3, P58 killer cel 99.8 6.7E-21 2.3E-25 171.3 11.2 227 3-249 4-240 (257)
193 3esu_F Antibody 14B7* light ch 99.8 3.4E-20 1.2E-24 168.0 15.9 179 6-184 4-231 (250)
194 3b5h_A Cervical EMMPRIN, HAB18 99.8 2.9E-19 9.9E-24 153.5 20.7 161 115-298 8-181 (184)
195 1vca_A VCAM-D1,2, human vascul 99.8 1E-19 3.5E-24 158.1 17.9 159 115-289 11-179 (202)
196 4f80_A Butyrophilin subfamily 99.8 9.9E-20 3.4E-24 162.0 18.1 187 298-533 14-212 (226)
197 1nbq_A JAM, junctional adhesio 99.8 1.9E-21 6.5E-26 171.2 6.8 181 106-299 5-206 (209)
198 3bp6_B Programmed cell death 1 99.8 5.6E-20 1.9E-24 160.6 16.0 177 110-298 7-191 (202)
199 1jbj_A CD3 epsilon and gamma e 99.8 4.1E-21 1.4E-25 164.7 8.5 151 16-189 9-179 (186)
200 1fnl_A Low affinity immunoglob 99.8 8.7E-20 3E-24 155.1 16.7 154 105-289 7-162 (175)
201 2p1y_A Bispecific alpha/beta T 99.8 2.2E-20 7.5E-25 167.9 13.6 178 8-186 2-222 (238)
202 2xzc_L FAB A.17 light chain; i 99.8 3.2E-20 1.1E-24 164.0 14.4 178 9-190 4-206 (216)
203 2pet_A Lutheran blood group gl 99.8 2E-20 6.7E-25 167.5 13.0 172 10-185 4-211 (231)
204 1f3r_B FV antibody fragment; I 99.8 4.3E-20 1.5E-24 167.7 15.3 176 11-186 5-232 (257)
205 3ux9_B SCFV antibody; five hel 99.8 1.1E-19 3.7E-24 165.3 17.9 177 9-186 5-236 (256)
206 1nkr_A P58-CL42 KIR; inhibitor 99.8 3.3E-20 1.1E-24 161.6 13.7 174 3-186 5-184 (201)
207 1svz_A Immunoglobulin;, single 99.8 1.1E-19 3.6E-24 164.3 17.2 179 7-185 2-228 (247)
208 2gjj_A A21 single-chain antibo 99.8 2.1E-19 7.2E-24 163.5 19.1 180 6-185 5-239 (264)
209 2v5y_A Receptor-type tyrosine- 99.8 8E-18 2.7E-22 176.8 33.8 451 20-533 90-560 (731)
210 1nqb_A Single-chain antibody f 99.8 1.3E-19 4.4E-24 164.2 17.5 171 10-186 4-219 (256)
211 2pet_A Lutheran blood group gl 99.8 1.8E-19 6.2E-24 161.2 17.7 143 365-532 78-229 (231)
212 1p6f_A NKP46, natural cytotoxi 99.8 2.8E-20 9.6E-25 166.0 12.2 170 3-186 4-175 (242)
213 3bkj_L WO2 IGG2A FAB fragment 99.8 4E-20 1.4E-24 167.5 13.3 181 6-189 34-241 (252)
214 3mj8_L Stimulatory hamster ant 99.8 9.5E-20 3.3E-24 160.6 15.0 179 108-294 4-207 (213)
215 1uct_A Immunoglobulin alpha FC 99.8 5.5E-20 1.9E-24 161.7 13.3 169 104-287 8-180 (218)
216 2d3v_A Leukocyte immunoglobuli 99.8 6.7E-20 2.3E-24 159.0 13.7 170 105-289 5-181 (196)
217 2fbo_J V1V2;, variable region- 99.8 7.7E-20 2.6E-24 165.8 14.3 178 110-296 7-248 (250)
218 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.8 3.4E-19 1.2E-23 161.6 18.3 182 6-189 3-236 (256)
219 4i0k_A CD276 antigen; immunogl 99.8 1.5E-20 5.1E-25 167.1 9.1 181 13-198 2-205 (222)
220 1c1e_H Catalytic antibody 1E9 99.8 1.2E-19 4.3E-24 160.6 14.9 180 10-193 4-214 (219)
221 2if7_A SLAM family member 6; N 99.8 1.4E-19 4.9E-24 156.1 14.6 160 10-190 2-183 (193)
222 3d9a_L Light chain of hyhel10 99.8 1.1E-19 3.7E-24 160.3 13.9 174 109-290 5-203 (213)
223 3omz_A Human vdelta1 gamma del 99.8 3.8E-20 1.3E-24 168.5 11.2 179 6-184 2-230 (259)
224 2ifg_A High affinity nerve gro 99.8 6.4E-20 2.2E-24 174.6 13.2 197 73-298 136-343 (347)
225 1f2q_A High affinity immunoglo 99.8 8.3E-20 2.8E-24 155.4 12.4 164 105-299 4-170 (176)
226 4dzb_B Vbeta2 (MAIT T cell rec 99.8 2.1E-19 7.3E-24 162.3 15.8 182 7-188 2-220 (246)
227 3knb_B Obscurin-like protein 1 99.8 1.9E-19 6.4E-24 137.5 13.0 97 3-99 10-106 (107)
228 3juy_B 3B3 single chain varian 99.8 1.8E-19 6.1E-24 163.6 15.3 181 4-186 4-243 (256)
229 4frw_A Poliovirus receptor-rel 99.8 1.2E-19 4.1E-24 160.7 13.7 181 111-300 5-211 (218)
230 1qok_A MFE-23 recombinant anti 99.8 3E-19 1E-23 164.4 16.6 177 9-186 29-254 (282)
231 2j6e_L IGM, FAB light chain; a 99.8 2.4E-20 8.3E-25 167.1 8.7 180 7-189 21-225 (234)
232 3uzq_A Anti-dengue MAB 4E11; d 99.8 3E-19 1E-23 161.9 15.7 180 8-187 3-231 (253)
233 3gkz_A Anti-methamphetamine si 99.8 1.6E-18 5.3E-23 157.6 20.2 181 6-186 8-235 (257)
234 2zg1_A Sialic acid-binding IG- 99.8 2.5E-19 8.7E-24 158.1 14.5 173 10-196 4-210 (214)
235 2ny1_B T-cell surface glycopro 99.8 1.5E-19 5E-24 155.3 12.5 162 114-301 4-180 (184)
236 3d9a_H Heavy chain of hyhel10 99.8 2.1E-19 7.3E-24 157.8 13.8 178 11-192 5-207 (210)
237 1lk3_L 9D7 light chain; antige 99.8 3.2E-19 1.1E-23 156.8 14.8 171 112-290 7-202 (210)
238 1oll_A NK receptor; immune sys 99.8 3.2E-19 1.1E-23 153.4 14.5 167 105-287 4-172 (188)
239 3umt_A SCFV heavy chain and li 99.8 9E-19 3.1E-23 159.0 17.9 177 10-186 6-231 (256)
240 1dr9_A B7-1 (CD80), T lymphocy 99.8 2.6E-19 8.8E-24 156.2 13.7 171 14-193 2-195 (201)
241 1q9r_B S25-2 FAB (IGG1K) heavy 99.8 1.8E-19 6.2E-24 159.9 12.7 180 11-193 5-217 (222)
242 2gi7_A GPVI protein; IG-like d 99.8 5.9E-20 2E-24 157.4 9.2 159 105-288 8-168 (184)
243 3ry4_A Low affinity immunoglob 99.8 5.7E-19 1.9E-23 149.4 15.2 153 106-289 5-159 (170)
244 1x9q_A SCFV, 4M5.3 anti-fluore 99.8 5.9E-19 2E-23 161.3 16.2 180 6-185 15-254 (268)
245 1ugn_A LIR1, leukocyte immunog 99.8 7.9E-20 2.7E-24 158.9 9.7 169 105-288 5-181 (198)
246 3pv7_A B7-H6, IG-like domain-c 99.8 1.4E-18 4.7E-23 157.1 17.9 181 11-198 8-223 (248)
247 3r4d_A CEA-related cell adhesi 99.8 2.5E-18 8.5E-23 150.9 18.9 171 114-299 8-197 (208)
248 3nl4_L Antigen binding fragmen 99.8 9.8E-19 3.4E-23 154.1 16.0 170 107-284 3-198 (213)
249 3bqu_C 3H6 FAB light chain; be 99.8 3.3E-20 1.1E-24 166.1 5.8 179 6-187 23-223 (233)
250 3sbw_C Programmed cell death 1 99.8 3.5E-18 1.2E-22 151.7 18.5 177 111-299 7-210 (222)
251 1gsm_A Madcam-1, mucosal addre 99.8 6.1E-18 2.1E-22 144.3 19.0 161 16-191 17-197 (210)
252 1dee_B IGM RF 2A2; FAB-IBP com 99.8 6.7E-18 2.3E-22 149.5 20.0 180 11-192 5-220 (223)
253 1jbj_A CD3 epsilon and gamma e 99.8 1.9E-19 6.4E-24 154.4 9.6 154 117-290 11-179 (186)
254 3tv3_L PGT128 light chain, IG 99.8 4.3E-18 1.5E-22 149.7 18.4 180 297-529 9-206 (211)
255 1q0x_L FAB 9B1, light chain; a 99.8 6.2E-18 2.1E-22 148.8 19.3 145 352-528 62-209 (212)
256 4fmk_A Poliovirus receptor-rel 99.8 2.7E-19 9.3E-24 159.3 10.4 179 11-198 6-216 (225)
257 3knb_B Obscurin-like protein 1 99.8 1.7E-18 5.8E-23 132.2 13.1 93 406-533 12-104 (107)
258 2fbj_H IGA-kappa J539 FAB (hea 99.8 6.6E-18 2.3E-22 149.2 18.9 175 11-190 5-212 (220)
259 2vol_A Murine IGG FC; FC, zinc 99.8 3.4E-19 1.2E-23 155.9 10.5 177 8-187 4-196 (207)
260 1pz5_B Heavy chain of FAB (SYA 99.8 1.5E-18 5.1E-23 153.7 14.5 177 11-192 5-214 (220)
261 2ghw_B Anti-SARS SCFV antibody 99.8 5.6E-18 1.9E-22 153.0 18.5 159 352-533 68-241 (247)
262 3knb_A Titin; IG-like, titin, 99.8 2.1E-18 7.2E-23 130.0 13.1 94 4-97 3-98 (100)
263 1op3_H FAB 2G12, heavy chain; 99.8 2.2E-18 7.7E-23 152.9 15.4 174 11-190 5-216 (225)
264 3s96_B 3B5H10 FAB light chain; 99.8 2E-18 6.9E-23 152.7 15.1 178 108-293 4-213 (218)
265 1sy6_A T-cell surface glycopro 99.8 1E-19 3.5E-24 158.3 6.4 151 18-188 15-192 (204)
266 1mju_H Immunoglobulin MS6-12; 99.8 2.9E-18 9.8E-23 152.3 15.9 182 11-195 5-213 (227)
267 3mtr_A N-CAM-1, NCAM-1, neural 99.8 1E-18 3.5E-23 154.1 12.8 181 4-197 17-207 (215)
268 3r06_A Anti-mouse CD3epsilon a 99.8 3E-18 1E-22 151.0 15.2 176 107-290 3-203 (213)
269 4ei6_B Vbeta16 XV19 type II na 99.8 3.8E-18 1.3E-22 153.9 16.1 181 6-187 2-218 (245)
270 3sob_L Antibody light chain; b 99.8 6.5E-18 2.2E-22 151.6 17.6 184 297-531 33-233 (237)
271 3pl6_D MBP peptide / T-cell re 99.8 2.6E-18 8.7E-23 157.3 15.1 181 6-187 26-240 (268)
272 1dr9_A B7-1 (CD80), T lymphocy 99.8 9.7E-18 3.3E-22 146.2 17.8 177 298-531 4-198 (201)
273 3mj6_A Junctional adhesion mol 99.8 1.4E-18 4.7E-23 159.3 12.7 179 107-299 7-236 (268)
274 3knb_A Titin; IG-like, titin, 99.8 3.3E-18 1.1E-22 128.9 12.6 95 406-533 4-98 (100)
275 3shs_A HOC head outer capsid p 99.8 1.2E-16 4E-21 136.4 23.3 244 6-285 2-279 (304)
276 3q5y_A TCR N15 beta; IG, T cel 99.8 2.5E-18 8.4E-23 154.5 13.9 179 6-187 2-212 (240)
277 3qib_D 2B4 beta chain; IG doma 99.8 2.7E-18 9.3E-23 157.2 14.3 224 272-525 4-246 (270)
278 3pv7_A B7-H6, IG-like domain-c 99.8 1.6E-18 5.5E-23 156.7 12.5 178 111-300 9-224 (248)
279 2gki_A Nuclease; anti-DNA anti 99.8 4.7E-18 1.6E-22 157.0 15.8 177 10-186 26-258 (291)
280 2zg1_A Sialic acid-binding IG- 99.8 2.6E-18 8.8E-23 151.6 13.4 174 111-298 6-211 (214)
281 3bae_H WO2 IGG2A FAB fragment 99.8 2.3E-18 7.8E-23 153.2 13.0 178 11-192 5-219 (228)
282 1dn0_B IGM-kappa cold agglutin 99.8 2.3E-17 8E-22 146.8 19.1 184 11-196 5-224 (232)
283 3nfj_J T cell receptor beta ch 99.8 8.9E-18 3E-22 151.4 16.6 181 8-188 3-219 (245)
284 2rgs_A I, IG gamma-2B heavy ch 99.8 1E-18 3.6E-23 154.0 10.0 182 4-188 7-205 (218)
285 2xzc_L FAB A.17 light chain; i 99.8 4.6E-18 1.6E-22 150.1 14.1 171 112-290 7-205 (216)
286 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.8 1E-17 3.5E-22 151.9 16.6 183 107-290 5-236 (256)
287 1hnf_A CD2; T lymphocyte adhes 99.8 3E-18 1E-22 145.0 12.2 156 13-195 6-177 (182)
288 2dru_A Chimera of CD48 antigen 99.8 2.1E-18 7.1E-23 146.5 11.2 152 13-192 6-174 (180)
289 1nkr_A P58-CL42 KIR; inhibitor 99.8 4.7E-18 1.6E-22 147.9 13.8 168 105-287 8-184 (201)
290 2if7_A SLAM family member 6; N 99.8 1.1E-17 3.7E-22 144.3 15.9 160 112-292 5-184 (193)
291 1ccz_A Protein (CD58); LFA-3, 99.8 8.1E-19 2.8E-23 147.6 8.4 154 13-193 2-165 (171)
292 1b6u_A KIR2DL3, P58 killer cel 99.8 2.2E-18 7.5E-23 154.9 11.5 185 336-570 34-229 (257)
293 4dzb_B Vbeta2 (MAIT T cell rec 99.8 8.3E-18 2.8E-22 151.8 15.4 200 297-525 10-222 (246)
294 1nqb_A Single-chain antibody f 99.8 1.5E-17 5.2E-22 150.5 17.2 165 112-287 7-219 (256)
295 1nfd_E H57 FAB; complex (immun 99.8 9.9E-19 3.4E-23 153.9 8.9 139 352-523 58-201 (212)
296 1c1e_H Catalytic antibody 1E9 99.8 3.2E-18 1.1E-22 151.5 12.2 176 112-295 7-215 (219)
297 1p6f_A NKP46, natural cytotoxi 99.8 9.4E-18 3.2E-22 149.6 15.2 167 105-287 7-175 (242)
298 3eow_R Poliovirus receptor; im 99.8 2.7E-19 9.2E-24 158.7 5.1 179 11-196 4-209 (221)
299 3nl4_H Antigen binding fragmen 99.8 8.1E-18 2.8E-22 148.3 14.6 180 10-194 3-209 (215)
300 3qib_D 2B4 beta chain; IG doma 99.8 3E-18 1E-22 156.9 12.2 203 69-289 3-244 (270)
301 2p1y_A Bispecific alpha/beta T 99.8 1.5E-17 5.1E-22 149.3 16.1 148 353-521 62-222 (238)
302 1hxm_B Gamma-delta T-cell rece 99.8 1.5E-17 5.3E-22 149.2 16.1 182 7-191 2-221 (242)
303 2cqv_A MLCK, myosin light chai 99.8 2.4E-17 8.3E-22 128.5 15.1 103 3-105 4-106 (114)
304 2v5y_A Receptor-type tyrosine- 99.8 2.2E-15 7.4E-20 158.3 34.4 352 120-534 91-457 (731)
305 2wbj_D OB TCR; transmembrane, 99.8 2.4E-17 8.4E-22 151.4 17.1 183 6-188 24-245 (279)
306 1q9r_B S25-2 FAB (IGG1K) heavy 99.7 6.3E-18 2.2E-22 149.9 12.3 175 113-295 8-218 (222)
307 3m8o_H Immunoglobulin A1 heavy 99.7 3.3E-17 1.1E-21 145.1 16.9 174 10-188 4-212 (221)
308 1f3r_B FV antibody fragment; I 99.7 1.2E-17 4.2E-22 151.5 14.5 174 114-287 9-232 (257)
309 3bkj_L WO2 IGG2A FAB fragment 99.7 7.5E-18 2.6E-22 152.5 13.0 176 107-290 36-241 (252)
310 2xqy_G A13-D6.3 monoclonal ant 99.7 2.1E-17 7.1E-22 149.5 15.2 178 9-189 9-215 (261)
311 1hnf_A CD2; T lymphocyte adhes 99.7 2.3E-17 7.9E-22 139.6 14.2 157 297-531 8-178 (182)
312 1mq8_A ICAM-1, intercellular a 99.7 1.4E-17 4.9E-22 150.9 13.5 259 112-401 6-283 (291)
313 1sy6_A T-cell surface glycopro 99.7 4.7E-18 1.6E-22 147.7 9.9 147 335-532 28-202 (204)
314 3bn9_D E2 FAB heavy chain; ant 99.7 2.1E-17 7.3E-22 148.7 14.2 175 11-190 5-221 (257)
315 1c5d_H Monoclonal antibody aga 99.7 2.4E-17 8E-22 145.1 14.0 175 11-191 5-208 (215)
316 4fmk_A Poliovirus receptor-rel 99.7 1.1E-17 3.9E-22 148.7 12.0 178 113-300 9-217 (225)
317 3umt_A SCFV heavy chain and li 99.7 7.8E-17 2.7E-21 146.2 17.6 175 113-287 10-231 (256)
318 4i0k_A CD276 antigen; immunogl 99.7 1.6E-17 5.3E-22 147.5 12.7 133 363-533 71-205 (222)
319 3fku_X Neutralizing antibody F 99.7 1.3E-17 4.4E-22 153.1 12.3 178 7-186 2-234 (280)
320 3d9a_H Heavy chain of hyhel10 99.7 8.7E-18 3E-22 147.5 10.7 172 113-293 8-207 (210)
321 2w59_A IGY FCU3-4; immunoglobu 99.7 4.6E-18 1.6E-22 151.2 8.8 181 5-188 11-217 (231)
322 1moe_A Anti-CEA MAB T84.66; an 99.7 6.7E-17 2.3E-21 145.2 16.6 188 298-519 11-219 (240)
323 3juy_B 3B3 single chain varian 99.7 1.1E-16 3.9E-21 145.1 18.2 183 105-287 6-243 (256)
324 3uzq_A Anti-dengue MAB 4E11; d 99.7 6.4E-17 2.2E-21 146.5 16.0 178 110-287 6-230 (253)
325 3liz_H 4C3 monoclonal antibody 99.7 8E-17 2.7E-21 145.6 16.1 183 11-196 5-217 (253)
326 1i1c_A IGG2A, IG gamma-2A chai 99.7 1.2E-17 4.1E-22 148.9 10.3 180 6-188 15-211 (239)
327 1pz5_B Heavy chain of FAB (SYA 99.7 6.5E-17 2.2E-21 143.1 14.7 175 112-294 7-215 (220)
328 1dee_B IGM RF 2A2; FAB-IBP com 99.7 2.2E-16 7.7E-21 139.7 18.1 174 113-293 8-220 (223)
329 1qok_A MFE-23 recombinant anti 99.7 9.4E-17 3.2E-21 147.7 16.2 176 111-287 32-254 (282)
330 1ccz_A Protein (CD58); LFA-3, 99.7 4.1E-17 1.4E-21 137.2 12.5 153 297-531 4-168 (171)
331 1l6x_A Immunoglobulin gamma-1 99.7 2.1E-17 7E-22 144.5 11.1 178 7-187 2-196 (207)
332 3gkz_A Anti-methamphetamine si 99.7 2.7E-16 9.1E-21 142.8 18.5 177 111-287 14-235 (257)
333 3esu_F Antibody 14B7* light ch 99.7 1E-16 3.5E-21 145.0 15.6 179 107-285 6-231 (250)
334 3pl6_D MBP peptide / T-cell re 99.7 1.4E-16 4.8E-21 145.6 16.6 198 297-524 35-242 (268)
335 2rgs_A I, IG gamma-2B heavy ch 99.7 1.8E-17 6.2E-22 146.0 10.0 165 117-289 23-205 (218)
336 2j6e_L IGM, FAB light chain; a 99.7 7.4E-18 2.5E-22 150.9 7.5 173 112-291 26-226 (234)
337 3bqu_C 3H6 FAB light chain; be 99.7 3.2E-18 1.1E-22 153.2 4.9 175 107-289 25-224 (233)
338 3auv_A SC-DSFV derived from th 99.7 1.4E-16 4.8E-21 146.1 16.0 181 106-286 13-235 (276)
339 2vol_A Murine IGG FC; FC, zinc 99.7 3.5E-17 1.2E-21 143.0 11.3 166 117-289 15-197 (207)
340 2fbj_H IGA-kappa J539 FAB (hea 99.7 1.7E-16 5.8E-21 140.1 15.8 171 113-291 8-212 (220)
341 1mju_H Immunoglobulin MS6-12; 99.7 5.9E-17 2E-21 143.8 12.6 174 112-293 7-210 (227)
342 3qp3_A Titin; I-SET IG-like, s 99.7 2.6E-16 8.8E-21 120.2 14.5 96 3-98 5-100 (103)
343 1bec_A 14.3.D T cell antigen r 99.7 4.4E-17 1.5E-21 145.9 11.4 176 9-187 2-211 (238)
344 1op3_H FAB 2G12, heavy chain; 99.7 7.3E-17 2.5E-21 143.1 12.6 171 113-291 8-216 (225)
345 2znx_A SCFV; fluorotryptohpan, 99.7 1.8E-16 6.2E-21 142.3 15.3 176 108-286 4-222 (242)
346 1g1c_A Immunoglobulin-like dom 99.7 3.4E-16 1.2E-20 118.6 14.2 96 3-98 2-98 (99)
347 1gsm_A Madcam-1, mucosal addre 99.7 1.9E-15 6.7E-20 128.8 20.4 156 115-291 17-196 (210)
348 1dn0_B IGM-kappa cold agglutin 99.7 4.2E-16 1.4E-20 138.7 16.5 178 113-297 8-224 (232)
349 1svz_A Immunoglobulin;, single 99.7 4.4E-16 1.5E-20 140.4 16.7 177 108-286 4-228 (247)
350 3mtr_A N-CAM-1, NCAM-1, neural 99.7 3E-16 1E-20 138.3 15.1 185 210-400 18-209 (215)
351 3nfj_J T cell receptor beta ch 99.7 3.5E-16 1.2E-20 140.9 15.9 200 297-525 10-221 (245)
352 3to4_D NKT vbeta2 (mouse varia 99.7 4.7E-17 1.6E-21 147.3 10.1 177 9-186 4-217 (253)
353 3bae_H WO2 IGG2A FAB fragment 99.7 1.5E-16 5.1E-21 141.4 12.8 173 113-293 8-219 (228)
354 2kdg_A Myotilin; immonoglobuli 99.7 2.3E-16 7.8E-21 119.8 12.0 97 3-99 2-99 (100)
355 4ei6_B Vbeta16 XV19 type II na 99.7 5.4E-16 1.8E-20 139.7 16.4 198 297-524 11-220 (245)
356 3q5y_A TCR N15 beta; IG, T cel 99.7 1E-15 3.5E-20 137.4 18.0 194 297-524 11-214 (240)
357 2dru_A Chimera of CD48 antigen 99.7 3.9E-16 1.3E-20 132.4 14.3 155 112-294 6-175 (180)
358 1oga_E TRBC1, T-cell receptor 99.7 3.1E-16 1.1E-20 141.6 14.5 181 7-188 4-218 (252)
359 3puc_A Titin; I-SET IG-like do 99.7 7E-16 2.4E-20 116.9 14.1 94 4-97 4-97 (99)
360 3eow_R Poliovirus receptor; im 99.7 2.5E-17 8.5E-22 145.9 6.9 170 113-294 7-206 (221)
361 1wit_A Twitchin 18TH IGSF modu 99.7 2.1E-16 7E-21 118.0 10.5 90 5-96 1-92 (93)
362 3irg_B Obscurin-like protein 1 99.7 4.9E-16 1.7E-20 119.6 13.0 95 5-99 12-106 (107)
363 2yuz_A Myosin-binding protein 99.7 1.9E-16 6.4E-21 119.3 10.2 92 4-99 5-96 (100)
364 3omz_A Human vdelta1 gamma del 99.7 4.3E-16 1.5E-20 141.6 14.6 180 107-286 4-231 (259)
365 3ux9_B SCFV antibody; five hel 99.7 2.3E-15 7.7E-20 136.6 19.1 199 298-521 12-236 (256)
366 1g1c_A Immunoglobulin-like dom 99.7 1.2E-15 4.2E-20 115.5 14.4 94 406-533 4-97 (99)
367 1waa_A Titin; metal binding pr 99.7 5.4E-16 1.9E-20 114.8 11.9 89 4-97 3-91 (93)
368 2gki_A Nuclease; anti-DNA anti 99.7 7.6E-16 2.6E-20 142.2 15.5 176 112-287 29-258 (291)
369 2gjj_A A21 single-chain antibo 99.7 1.2E-15 4.2E-20 138.5 16.6 179 105-286 5-239 (264)
370 3o3u_N Maltose-binding peripla 99.7 5E-16 1.7E-20 159.0 15.6 174 298-523 376-566 (581)
371 3qhz_H Human monoclonal antibo 99.7 1.1E-15 3.8E-20 136.2 15.6 180 11-195 5-225 (232)
372 2kkq_A Myotilin; unknown funct 99.7 8.8E-16 3E-20 119.6 13.0 98 3-100 12-111 (116)
373 3qp3_A Titin; I-SET IG-like, s 99.7 1.8E-15 6.1E-20 115.5 14.4 93 406-533 7-99 (103)
374 2cqv_A MLCK, myosin light chai 99.7 9.2E-16 3.2E-20 119.4 12.8 93 406-533 6-98 (114)
375 3tv3_H PGT128 heavy chain, IG 99.7 1.4E-15 4.8E-20 136.0 15.7 180 11-195 5-233 (239)
376 1ypz_F T-cell receptor gamma c 99.7 6.9E-16 2.4E-20 137.1 13.4 177 9-188 4-216 (230)
377 1u2h_A APEG-1, aortic preferen 99.7 8.7E-16 3E-20 116.3 12.0 94 5-98 4-98 (99)
378 3m8o_H Immunoglobulin A1 heavy 99.7 9.8E-16 3.4E-20 135.5 14.3 168 113-289 8-212 (221)
379 2wbj_D OB TCR; transmembrane, 99.7 2.8E-15 9.5E-20 137.7 17.0 200 297-525 33-247 (279)
380 2lvc_A Obscurin-like protein 1 99.7 3.9E-16 1.3E-20 114.6 8.9 79 5-84 3-83 (91)
381 2xqy_G A13-D6.3 monoclonal ant 99.7 9.6E-16 3.3E-20 138.6 13.4 170 112-289 13-214 (261)
382 1hxm_B Gamma-delta T-cell rece 99.7 2.2E-15 7.6E-20 135.1 15.7 184 108-296 4-225 (242)
383 1i1c_A IGG2A, IG gamma-2A chai 99.7 1.9E-16 6.3E-21 141.2 8.6 166 117-289 29-211 (239)
384 3irg_A Titin; IG-like, titin, 99.7 1.8E-15 6.1E-20 114.9 12.9 94 4-97 3-98 (100)
385 3u2s_H PG9 heavy chain; greek 99.7 1.8E-15 6.3E-20 135.6 15.0 181 10-195 3-234 (248)
386 3liz_H 4C3 monoclonal antibody 99.6 9.2E-16 3.2E-20 138.6 13.1 177 113-297 8-217 (253)
387 1wit_A Twitchin 18TH IGSF modu 99.6 1.1E-15 3.6E-20 114.1 11.2 90 407-533 2-93 (93)
388 3puc_A Titin; I-SET IG-like do 99.6 3.7E-15 1.3E-19 112.8 14.1 93 406-533 5-97 (99)
389 3o3u_N Maltose-binding peripla 99.6 4.2E-16 1.4E-20 159.6 11.7 168 13-188 373-566 (581)
390 3fku_X Neutralizing antibody F 99.6 3.7E-15 1.3E-19 136.7 16.0 175 112-287 7-234 (280)
391 2w59_A IGY FCU3-4; immunoglobu 99.6 1.8E-15 6E-20 134.5 13.4 169 328-523 34-217 (231)
392 4acp_A IG gamma-1 chain C regi 99.6 2.7E-16 9.1E-21 139.5 8.0 199 75-288 1-217 (240)
393 2e7c_A Myosin-binding protein 99.6 3.3E-15 1.1E-19 117.1 13.4 94 5-99 20-116 (118)
394 2dm2_A Palladin; beta-sandwich 99.6 1.2E-15 3.9E-20 118.1 10.6 97 4-100 6-104 (110)
395 1u2h_A APEG-1, aortic preferen 99.6 4.3E-15 1.5E-19 112.4 13.6 93 407-533 5-97 (99)
396 1nct_A Titin; cell adhesion, g 99.6 3.5E-16 1.2E-20 119.6 7.4 95 3-97 11-105 (106)
397 3n9g_H FAB fragment of MAB CR4 99.6 4.3E-15 1.5E-19 132.0 15.7 181 11-197 5-223 (230)
398 1ypz_E T cell receptor delta, 99.6 4.3E-15 1.5E-19 129.3 15.3 167 9-188 4-198 (207)
399 4acp_A IG gamma-1 chain C regi 99.6 3.6E-16 1.2E-20 138.7 8.5 180 6-187 23-217 (240)
400 1x9q_A SCFV, 4M5.3 anti-fluore 99.6 2.5E-15 8.4E-20 137.2 14.2 177 106-286 16-254 (268)
401 1c5d_H Monoclonal antibody aga 99.6 1.1E-15 3.9E-20 134.3 11.5 173 113-293 8-209 (215)
402 2kdg_A Myotilin; immonoglobuli 99.6 4.2E-15 1.4E-19 112.7 13.1 93 407-533 5-97 (100)
403 2bk8_A Connectin, M1, titin he 99.6 6.4E-15 2.2E-19 110.9 14.0 91 8-98 3-94 (97)
404 3bn9_D E2 FAB heavy chain; ant 99.6 6.6E-16 2.3E-20 138.9 10.0 170 113-290 8-220 (257)
405 3shs_A HOC head outer capsid p 99.6 1.4E-13 4.7E-18 117.7 22.8 196 218-443 9-230 (304)
406 2aty_A Complement receptor chi 99.6 5.8E-15 2E-19 141.4 16.5 177 9-187 170-361 (376)
407 3nl4_H Antigen binding fragmen 99.6 3.6E-15 1.2E-19 131.2 13.7 191 298-531 9-211 (215)
408 3irg_B Obscurin-like protein 1 99.6 5.5E-15 1.9E-19 113.7 13.1 93 406-533 12-104 (107)
409 1bec_A 14.3.D T cell antigen r 99.6 1.3E-14 4.5E-19 129.7 17.3 193 297-523 8-212 (238)
410 3iu4_H CHP3 FAB heavy chain; a 99.6 2.9E-15 1E-19 135.5 13.1 175 12-192 6-217 (263)
411 1l6x_A Immunoglobulin gamma-1 99.6 1.4E-15 4.8E-20 132.8 10.6 164 118-289 16-197 (207)
412 1fhg_A Telokin; immunoglobulin 99.6 7.3E-15 2.5E-19 121.1 14.3 98 3-100 38-136 (154)
413 2dm3_A KIAA0992 protein, palla 99.6 7.4E-16 2.5E-20 119.2 7.7 98 3-100 6-104 (110)
414 2lu7_A Obscurin-like protein 1 99.6 1.2E-15 4E-20 110.1 8.2 81 12-97 2-82 (84)
415 2eo9_A Roundabout homolog 1; b 99.6 1.5E-15 5E-20 119.1 9.5 96 2-100 4-100 (118)
416 2eo9_A Roundabout homolog 1; b 99.6 2.2E-15 7.5E-20 118.1 10.3 111 405-560 6-117 (118)
417 2bk8_A Connectin, M1, titin he 99.6 1.5E-14 5.2E-19 108.8 14.3 89 410-533 4-93 (97)
418 2yuz_A Myosin-binding protein 99.6 3.2E-15 1.1E-19 112.5 10.4 89 406-533 6-94 (100)
419 2yr3_A Myosin light chain kina 99.6 3.2E-15 1.1E-19 113.0 10.2 91 3-96 8-98 (99)
420 2ckn_A Basic fibroblast growth 99.6 3.4E-15 1.2E-19 111.7 10.1 89 3-96 6-94 (95)
421 1waa_A Titin; metal binding pr 99.6 8.7E-15 3E-19 108.2 12.1 88 406-533 4-91 (93)
422 3to4_D NKT vbeta2 (mouse varia 99.6 7.2E-15 2.5E-19 132.8 14.2 195 297-522 10-218 (253)
423 1he7_A High affinity nerve gro 99.6 8.5E-15 2.9E-19 112.9 12.2 95 4-102 2-103 (126)
424 1fhg_A Telokin; immunoglobulin 99.6 1.4E-14 4.8E-19 119.3 14.2 94 406-533 40-133 (154)
425 3irg_A Titin; IG-like, titin, 99.6 1.1E-14 3.8E-19 110.4 12.6 95 406-533 4-98 (100)
426 2dav_A SLOW MYBP-C, myosin-bin 99.6 1.7E-15 5.8E-20 116.9 7.9 94 5-98 6-111 (126)
427 1x44_A Myosin-binding protein 99.6 5.7E-15 1.9E-19 112.5 10.4 91 5-100 6-98 (103)
428 2eny_A Obscurin; beta-sandwich 99.6 2.9E-15 9.8E-20 113.9 8.7 93 4-100 6-99 (104)
429 1oga_E TRBC1, T-cell receptor 99.6 2.7E-14 9.3E-19 128.9 16.6 150 352-525 64-220 (252)
430 2edf_A Obscurin; beta-sandwich 99.6 4.3E-15 1.5E-19 113.2 9.6 92 4-100 6-97 (103)
431 3sob_H Antibody heavy chain, l 99.6 1.1E-14 3.9E-19 131.6 14.0 179 11-195 28-247 (256)
432 2edj_A Roundabout homolog 2; K 99.6 2.8E-15 9.5E-20 113.6 8.2 95 2-99 4-99 (100)
433 2ckn_A Basic fibroblast growth 99.6 1.2E-14 3.9E-19 108.8 11.5 89 404-532 6-94 (95)
434 1ow0_A IG alpha-1 chain C regi 99.6 1.5E-16 5.1E-21 139.7 1.1 177 6-187 3-199 (214)
435 1iam_A ICAM-1, CD54, intercell 99.6 3.5E-14 1.2E-18 118.2 15.2 159 9-187 2-166 (185)
436 3kvq_A Vascular endothelial gr 99.6 2.1E-15 7.2E-20 116.3 7.4 97 2-100 6-102 (108)
437 3mlr_H Human monoclonal anti-H 99.6 1.6E-14 5.5E-19 127.8 14.0 174 12-191 6-218 (226)
438 3kvq_A Vascular endothelial gr 99.6 3.6E-15 1.2E-19 114.9 8.4 91 407-534 10-100 (108)
439 1nct_A Titin; cell adhesion, g 99.6 2.9E-15 9.8E-20 114.5 7.6 94 405-533 12-105 (106)
440 3tv3_H PGT128 heavy chain, IG 99.6 6.9E-15 2.4E-19 131.5 11.1 176 113-296 8-233 (239)
441 2yr3_A Myosin light chain kina 99.6 7.5E-15 2.6E-19 111.0 9.6 89 406-532 10-98 (99)
442 2e7c_A Myosin-binding protein 99.6 2.4E-14 8.1E-19 112.1 12.7 91 407-533 21-114 (118)
443 3cx2_A Myosin-binding protein 99.6 2.8E-14 9.7E-19 109.5 12.8 92 6-97 4-107 (108)
444 1pd6_A Cardiac MYBP-C;, myosin 99.6 1.6E-14 5.5E-19 109.5 11.0 91 2-97 11-103 (104)
445 2e6p_A Obscurin-like protein 1 99.6 9.2E-15 3.2E-19 111.6 9.7 92 4-100 5-99 (104)
446 3qhz_H Human monoclonal antibo 99.6 6.8E-14 2.3E-18 124.6 16.9 196 298-532 10-227 (232)
447 2dm3_A KIAA0992 protein, palla 99.6 9.9E-15 3.4E-19 112.8 9.8 94 406-533 8-101 (110)
448 2edj_A Roundabout homolog 2; K 99.6 9.2E-15 3.1E-19 110.7 9.4 92 404-533 5-97 (100)
449 1gxe_A Myosin binding protein 99.6 7.8E-15 2.7E-19 117.1 9.3 85 13-97 25-138 (139)
450 2k1m_A Myosin-binding protein 99.6 2E-14 7E-19 107.4 11.1 87 6-97 8-94 (95)
451 1ypz_F T-cell receptor gamma c 99.6 1.5E-14 5.1E-19 128.4 12.1 177 110-289 6-216 (230)
452 2yuv_A Myosin-binding protein 99.6 1.4E-14 4.7E-19 109.6 9.9 90 5-99 6-96 (100)
453 1he7_A High affinity nerve gro 99.6 4.1E-14 1.4E-18 109.0 12.3 85 421-533 14-98 (126)
454 2edn_A Myosin-binding protein 99.6 6.4E-15 2.2E-19 112.4 7.6 94 5-98 11-116 (118)
455 2kkq_A Myotilin; unknown funct 99.6 5.9E-14 2E-18 109.2 13.0 94 406-533 14-108 (116)
456 2lu7_A Obscurin-like protein 1 99.6 8.4E-15 2.9E-19 105.6 7.5 80 414-533 3-82 (84)
457 2lvc_A Obscurin-like protein 1 99.6 1.7E-14 5.9E-19 105.7 9.3 86 406-531 3-90 (91)
458 1wwb_X Protein (brain derived 99.6 3.3E-14 1.1E-18 107.8 11.0 93 4-99 2-99 (103)
459 1wwb_X Protein (brain derived 99.6 7E-14 2.4E-18 106.0 12.9 95 406-533 3-97 (103)
460 1gxe_A Myosin binding protein 99.5 1.3E-14 4.5E-19 115.8 9.0 114 414-533 25-138 (139)
461 3caf_A Fibroblast growth facto 99.5 6.7E-15 2.3E-19 111.5 7.0 92 5-96 3-99 (100)
462 3u2s_H PG9 heavy chain; greek 99.5 1.4E-14 4.9E-19 129.8 10.2 177 112-296 6-234 (248)
463 2edk_A Myosin-binding protein 99.5 2.8E-15 9.6E-20 113.7 4.8 90 4-98 6-99 (101)
464 2dlt_A Myosin binding protein 99.5 8.6E-15 2.9E-19 112.1 7.5 92 3-97 5-96 (106)
465 2dav_A SLOW MYBP-C, myosin-bin 99.5 2.9E-14 9.9E-19 110.0 10.3 112 407-552 7-124 (126)
466 2e6q_A Obscurin-like protein 1 99.5 2.8E-14 9.6E-19 108.2 9.8 90 5-99 7-106 (112)
467 2edh_A Obscurin; structural ge 99.5 7.1E-14 2.4E-18 108.5 12.4 89 5-99 18-106 (113)
468 2aty_A Complement receptor chi 99.5 5.4E-14 1.9E-18 134.6 14.3 165 117-288 180-361 (376)
469 3n9g_H FAB fragment of MAB CR4 99.5 3.4E-13 1.2E-17 119.8 18.3 197 298-533 10-224 (230)
470 2dm2_A Palladin; beta-sandwich 99.5 5.2E-14 1.8E-18 108.7 11.2 95 405-533 6-101 (110)
471 2dm7_A KIAA1556 protein; beta- 99.5 3.9E-14 1.3E-18 108.9 10.3 91 3-99 5-95 (108)
472 2dku_A KIAA1556 protein; beta- 99.5 5.8E-14 2E-18 106.9 11.0 93 3-100 5-97 (103)
473 3bfo_A Mucosa-associated lymph 99.5 4.2E-14 1.4E-18 104.8 9.9 83 6-97 3-86 (91)
474 2e7b_A Obscurin; IG-like domai 99.5 2.7E-14 9.2E-19 108.8 9.1 91 4-99 6-96 (103)
475 1hxm_A Gamma-delta T-cell rece 99.5 8.7E-14 3E-18 122.5 13.6 167 9-187 4-198 (229)
476 3caf_A Fibroblast growth facto 99.5 4.7E-14 1.6E-18 106.8 9.6 92 407-532 4-99 (100)
477 3iu4_H CHP3 FAB heavy chain; a 99.5 2.9E-13 1E-17 122.4 15.8 195 298-531 10-221 (263)
478 3cx2_A Myosin-binding protein 99.5 2.5E-13 8.5E-18 104.2 12.9 98 407-533 4-107 (108)
479 2cpc_A KIAA0657 protein; immun 99.5 2.1E-13 7.2E-18 105.8 12.4 90 5-99 9-101 (113)
480 1ow0_A IG alpha-1 chain C regi 99.5 2E-15 6.7E-20 132.6 0.7 170 109-288 8-199 (214)
481 2cr6_A KIAA1556 protein, obscu 99.5 2.2E-14 7.4E-19 111.6 6.1 92 5-100 12-104 (115)
482 2cry_A KIN of IRRE-like protei 99.5 3.2E-15 1.1E-19 117.9 1.2 95 407-533 14-112 (122)
483 3bfo_A Mucosa-associated lymph 99.5 2.3E-13 7.7E-18 100.8 11.0 83 407-533 3-86 (91)
484 3m45_A Cell adhesion molecule 99.5 2.6E-13 9E-18 104.4 11.7 92 6-98 6-106 (108)
485 3mlr_H Human monoclonal anti-H 99.5 1.8E-13 6.1E-18 121.1 12.2 170 114-293 9-219 (226)
486 2edn_A Myosin-binding protein 99.5 1.3E-13 4.4E-18 105.2 9.5 98 407-533 12-115 (118)
487 3f8u_B Tapasin; endoplasmic re 99.5 1.7E-12 5.8E-17 120.9 18.7 168 12-186 164-388 (401)
488 1x44_A Myosin-binding protein 99.5 2.3E-13 7.8E-18 103.5 10.7 87 407-533 7-95 (103)
489 1wwc_A Protein (NT-3 growth fa 99.5 2.5E-13 8.6E-18 106.2 11.1 97 1-100 3-103 (118)
490 3sob_H Antibody heavy chain, l 99.5 1.9E-12 6.5E-17 117.0 18.1 196 298-532 33-249 (256)
491 1ypz_E T cell receptor delta, 99.5 5.8E-13 2E-17 115.8 14.1 167 109-290 5-199 (207)
492 2edh_A Obscurin; structural ge 99.5 1.2E-13 4.2E-18 107.1 8.8 100 388-533 5-104 (113)
493 1wwc_A Protein (NT-3 growth fa 99.5 3.4E-13 1.2E-17 105.4 11.1 93 407-533 8-100 (118)
494 2cr3_A Basic fibroblast growth 99.5 9.3E-14 3.2E-18 104.7 7.4 86 9-99 6-91 (99)
495 2eny_A Obscurin; beta-sandwich 99.5 1.8E-13 6.2E-18 103.8 8.9 89 406-533 7-96 (104)
496 3u1s_H FAB PGT145 heavy chain; 99.5 1.8E-13 6.2E-18 124.3 10.6 177 11-192 28-258 (267)
497 2edf_A Obscurin; beta-sandwich 99.5 1.5E-13 5.1E-18 104.6 8.5 88 406-533 7-94 (103)
498 2k1m_A Myosin-binding protein 99.5 4.5E-13 1.5E-17 100.0 10.9 88 406-533 7-94 (95)
499 3so5_A LIG-3, leucine-rich rep 99.5 3.7E-13 1.3E-17 104.4 10.8 94 3-96 7-111 (112)
500 2dlt_A Myosin binding protein 99.5 1.1E-13 3.7E-18 106.0 7.4 91 405-533 6-96 (106)
No 1
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=100.00 E-value=2e-68 Score=545.09 Aligned_cols=506 Identities=24% Similarity=0.403 Sum_probs=419.7
Q ss_pred CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
.-||.|+.++.++.+.+|+.++|.|.+.|.|.+.|+|||+|..+....++.+.......+|.|.+++.+|+|.|+|.|.|
T Consensus 3 ~~pP~f~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 82 (570)
T 3b43_A 3 MEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAEN 82 (570)
T ss_dssp CCCCEEEECCCCEEECTTSCEEEEEEEESSSSCEEEEECSSSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCCcceEECCceEEcCCCEEEEEEEEccCCCCEEEEEECCEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEEEe
Confidence 45899999999999999999999999999999999999999999888888777777789999999999999999999999
Q ss_pred CCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeE
Q psy16852 84 IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163 (579)
Q Consensus 84 ~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~ 163 (579)
..|.......+.|... ..+|.+........+.+|+.+.|.|.+.|.|++.|.||+++..+........... ....
T Consensus 83 ~~g~~~~~~~l~v~~~---~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~--~~~~ 157 (570)
T 3b43_A 83 SVGAVASSAVLVIKER---KLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFI--HNVA 157 (570)
T ss_dssp TTEEEEEEEEEEECCC---CCCCEESSCCCCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEEEEEE--TTEE
T ss_pred CCceEEEEEEEEECCC---CCCCcccccCCCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEEEEEE--CCEE
Confidence 9998887777777543 2356677677778888999999999999999999999999998876655443322 3457
Q ss_pred EEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeE
Q psy16852 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEV 243 (579)
Q Consensus 164 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v 243 (579)
.|.|.++..+|+|.|+|.|.|..|....+..+.+.. ...+|.+...+....+.+|+.+.|.|.+.|.|.+.+
T Consensus 158 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~--------~~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i 229 (570)
T 3b43_A 158 TLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSE--------HEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKI 229 (570)
T ss_dssp EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC--------CCCCCEEEECCCCBCCBSBSCEEEEEEEESSSCCEE
T ss_pred EEEECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcC--------CCCCCccccCCceeEecCCCeEEEEEEEEECCCCEE
Confidence 899999999999999999999999887777777652 124666766666777889999999999999999999
Q ss_pred EEEECCEEeccCc---eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeeccccCce
Q psy16852 244 KWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASF 320 (579)
Q Consensus 244 ~W~~~~~~i~~~~---~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~ 320 (579)
.|++++..+.... .........|.|.++..+|+|.|+|.|.|..|....+..+.|.. .+.+..... ......
T Consensus 230 ~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~--~p~~~~~~~---~~~~v~ 304 (570)
T 3b43_A 230 TWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE--PPRFIKKLE---PSRIVK 304 (570)
T ss_dssp EEEETTEECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBC--CCEEEECCC---SBCCEE
T ss_pred EEEECCEECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeec--CCcccccCC---CccEEc
Confidence 9999999987554 23345668899999999999999999999999877666665543 222221100 001112
Q ss_pred eeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEe
Q psy16852 321 QWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400 (579)
Q Consensus 321 ~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 400 (579)
......+.|.+.|.|.+.+.|++++..+.....+.+... .....|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus 305 ~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~ 383 (570)
T 3b43_A 305 QDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFV-ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE 383 (570)
T ss_dssp SSCEEEEEEEEESSSSCEEEEEETTEECCCSSSEEEEEE-TTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEEC
T ss_pred CCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEE-CCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecC
Confidence 223344579999999999999999999988776655432 3445899999999999999999999999999999999986
Q ss_pred cccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeE
Q psy16852 401 KEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVY 480 (579)
Q Consensus 401 ~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 480 (579)
+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.++.+..
T Consensus 384 ------~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~---------------------- 435 (570)
T 3b43_A 384 ------PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMS---------------------- 435 (570)
T ss_dssp ------CCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEE----------------------
T ss_pred ------CCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEE----------------------
Confidence 7888877778888999999999999999999999999999987766555432
Q ss_pred EEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEeeCCcccccccCCccccCCCceEEecCC
Q psy16852 481 SVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQ 560 (579)
Q Consensus 481 ~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~v~~~p~~~~~~~~~~~~~g~ 560 (579)
++..+.|.|.++..+|+|.|+|.|.|..|.....+.|.| ..||++...+.+..+..|+
T Consensus 436 -------------~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v---------~~~P~~~~~~~~~~~~~g~ 493 (570)
T 3b43_A 436 -------------ENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITL---------KAPPRFVKKLSDISTVVGE 493 (570)
T ss_dssp -------------ETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE---------CCCCEEEECCCCBCCBTTC
T ss_pred -------------cCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEe---------ccCCcccccCCCceecCCC
Confidence 334456999999999999999999999999999998886 4789999888889999999
Q ss_pred cEEEEEEeccceeecccc
Q psy16852 561 SVLFTAQVGYSERLEIPL 578 (579)
Q Consensus 561 ~~~l~C~~~~~~~~~~~~ 578 (579)
.++|.|.+.+.|++.|.|
T Consensus 494 ~~~l~c~~~g~p~~~v~W 511 (570)
T 3b43_A 494 EVQLQATIEGAEPISVAW 511 (570)
T ss_dssp CEEEEEEEESCSSCCCEE
T ss_pred eEEEEEEEecCCCCEEEE
Confidence 999999999999998877
No 2
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=100.00 E-value=1.2e-61 Score=495.06 Aligned_cols=466 Identities=27% Similarity=0.459 Sum_probs=381.4
Q ss_pred CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
.+||.|...+.++.+.+|+++.|.|.+.|.|.+.|+|||||..+....++.........+|.|.++..+|+|.|+|.|.|
T Consensus 99 ~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 178 (570)
T 3b43_A 99 KLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASN 178 (570)
T ss_dssp CCCCEESSCCCCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCCcccccCCCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEe
Confidence 36889999999999999999999999999999999999999999888777776677788999999999999999999999
Q ss_pred CCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeE
Q psy16852 84 IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163 (579)
Q Consensus 84 ~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~ 163 (579)
..|....+..+.|.... .+|.+...+....+.+|+.+.|.|.+.|.|++.|+|++++..+..+.+..+... .+..
T Consensus 179 ~~g~~~~~~~l~v~~~~---~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~~~~~~~~~--~~~~ 253 (570)
T 3b43_A 179 PLGTASSSAKLTLSEHE---VPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLV--ENTA 253 (570)
T ss_dssp TTEEEEEEEEEEEECCC---CCCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECCTTSSEEEEEE--TTEE
T ss_pred CCcEEEEEEEEEEcCCC---CCCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEECCEECcCCCcEEEEEE--CCEE
Confidence 99988888888886532 355666666677788999999999999999999999999999877666555433 3457
Q ss_pred EEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCC-ceeeCCCCeEEEEEEEEccCCCe
Q psy16852 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ-ALLVPKDSTVTLEAEYTGTPTPE 242 (579)
Q Consensus 164 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~p~~~ 242 (579)
.|.|.++..+|+|.|+|.|.|..|....+..+.+. .+|.+..... ...+.+|+.+.|.|.+.|.|.+.
T Consensus 254 ~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~-----------~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~ 322 (570)
T 3b43_A 254 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ-----------EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIK 322 (570)
T ss_dssp EEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCB-----------CCCEEEECCCSBCCEESSCEEEEEEEEESSSSCE
T ss_pred EEEEcccCcccCEEEEEEEECCCCcEEEEEEEEee-----------cCCcccccCCCccEEcCCCcEEEEEEEeeCCCCE
Confidence 89999999999999999999999987776666554 5666655433 34577899999999999999999
Q ss_pred EEEEECCEEeccCc---eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeeccccCc
Q psy16852 243 VKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTAS 319 (579)
Q Consensus 243 v~W~~~~~~i~~~~---~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~ 319 (579)
+.|++++..+.... .........|.|.+++.+|+|.|+|.|.|..|....+..+.|...+ .+..... ....
T Consensus 323 v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P--~~~~~~~----~~~~ 396 (570)
T 3b43_A 323 VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPP--VFRKKPH----PVET 396 (570)
T ss_dssp EEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCC--EECSCCC----CEEE
T ss_pred EEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCC--eeecCCC----ceee
Confidence 99999999987654 2334566789999999999999999999999998887777765332 1111110 0011
Q ss_pred eeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEE
Q psy16852 320 FQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVE 399 (579)
Q Consensus 320 ~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 399 (579)
.......+.|.+.|.|.+.+.|++++..+..+.++.+..+ +....|.|.++..+|+|.|+|.|.|..|.......|.|.
T Consensus 397 ~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 475 (570)
T 3b43_A 397 LKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSE-NFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK 475 (570)
T ss_dssp CTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEE-TTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred cCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEc-CCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEec
Confidence 1122334568999999999999999999988877766543 345589999999999999999999999999988888887
Q ss_pred ecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCC-CCCeeEEEcCCCCeEEEEEccccCCCce
Q psy16852 400 EKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILP-DNGHTMEFNPTTGECVLSISEATPQDEA 478 (579)
Q Consensus 400 ~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g 478 (579)
. +|.+...+....+..|+.+.|.|.+.|.|+|++.|++++..+.. +.++.+.
T Consensus 476 ~------~P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~~~~~~~--------------------- 528 (570)
T 3b43_A 476 A------PPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWIS--------------------- 528 (570)
T ss_dssp C------CCEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEEETTEECCCCTTTEEEC---------------------
T ss_pred c------CCcccccCCCceecCCCeEEEEEEEecCCCCEEEEEeCCeEeccCCCeEEEE---------------------
Confidence 5 88888888888899999999999999999999999999876543 3333321
Q ss_pred eEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 479 VYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 479 ~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
..+..+.|.|.+++.+|+|.|+|.|.|.+|.+..++.|.|.
T Consensus 529 --------------~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~L~V~ 569 (570)
T 3b43_A 529 --------------YSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569 (570)
T ss_dssp --------------CCSSEEEEEESSCCTTCCEEEEEEEECSSCEEEEEEEECCB
T ss_pred --------------ECCCEEEEEECcCCHHHCEEEEEEEEECCcEEEEEEEEEEe
Confidence 12345569999999999999999999999999999999874
No 3
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=100.00 E-value=3.7e-57 Score=470.60 Aligned_cols=508 Identities=14% Similarity=0.176 Sum_probs=373.4
Q ss_pred cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCC---------------CCE--EEEEeCCEEEEEEcCCCC
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHAT---------------EHY--LITTVESVSTLEIINPTK 71 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~---------------~~~--~~~~~~~~~~L~i~~~~~ 71 (579)
|+.+|.++.+.+|++++|.|...+.+...+.|||+....... ..+ +... ..+.+|.|.+++.
T Consensus 2 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~gr~~~-~~~~sL~I~~v~~ 80 (642)
T 1e07_A 2 LTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREII-YPNASLLIQNIIQ 80 (642)
T ss_pred ceEeccCCcccccccEEEEEccCCCCceEEEEECCcccCCcceEEEEEccccccccCccccCceee-ccCCcEEECCCCc
Confidence 667888999999999999999766666689999944221110 000 1111 1235899999999
Q ss_pred CCCEEEEEEEEcCC-eeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCC
Q psy16852 72 EDIGVYTCKATNIG-GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN 150 (579)
Q Consensus 72 ~d~G~Y~C~~~~~~-g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~ 150 (579)
+|+|.|+|.+.+.. +.....+.|.|...+ .+|.+.. .....+.+|+.+.|.|.+.+ |.+.+.|++++..+....
T Consensus 81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~---~~p~i~~-~~~~~v~~g~~v~l~C~~~~-p~~~v~W~~~g~~l~~~~ 155 (642)
T 1e07_A 81 NDTGFYTLHVIKSDLVNEEATGQFRVYPEL---PKPSISS-NNSKPVEDKDAVAFTCEPET-QDATYLWWVNNQSLPVSP 155 (642)
T ss_pred ccCcEEEEEEEcCCCeEEEEEEEEEecccC---CCCcEEc-cCceeEecCCcEEEEEECCC-CCeeEEEEECCeECCCCC
Confidence 99999999998764 444566677776532 2334433 23456778999999999988 889999999999887665
Q ss_pred CceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeE-EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeE
Q psy16852 151 GHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAE-CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTV 229 (579)
Q Consensus 151 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~ 229 (579)
+..+.. ....|.|.++..+|+|.|+|.+.|..+... ....+.+.. .++.+...+....+.+|+.+
T Consensus 156 ~~~~~~----~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~----------~p~~~~~~~~~~~~~~G~~~ 221 (642)
T 1e07_A 156 RLQLSN----GNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLY----------GPDAPTISPLNTSYRSGENL 221 (642)
T ss_pred ceEEcC----CCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEe----------CCCCcEEecCCcccccCCEE
Confidence 544332 235799999999999999999999877532 234444431 12222223445568899999
Q ss_pred EEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccce-eeee
Q psy16852 230 TLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAE-TVMM 308 (579)
Q Consensus 230 ~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~-~~~l 308 (579)
.|.|.+.+.|.+.+.|+++|..+.. ...|.|.++..+|+|.|+|.|.|..|....+..+.|.+.... ...+
T Consensus 222 ~l~C~~~g~p~~~i~W~~~g~~i~~--------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i 293 (642)
T 1e07_A 222 NLSCHAASNPPAQYSWFVNGTFQQS--------TQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFI 293 (642)
T ss_pred EEEEEcCCCCCcEEEEEECCeEccc--------CCceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEE
Confidence 9999999999999999999988743 246999999999999999999999887665555555443321 1111
Q ss_pred eeeeeccccCcee-eeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCc
Q psy16852 309 DVRVESHPTASFQ-WFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPV 387 (579)
Q Consensus 309 ~~~~~~~~~~~~~-~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 387 (579)
.. .....+. .....+.|.+.|.| +.+.|+++|..+....++.+.... ..|.|.++..+|+|.|+|.|.|..
T Consensus 294 ~~----~~~~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~a~n~~ 365 (642)
T 1e07_A 294 TS----NNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSNDN---RTLTLLSVTRNDVGPYECGIQNEL 365 (642)
T ss_pred Ec----CCceeEecCCcEEEEEECCCCC-ccEEEEECCccCCCcCCEEEeCCC---CEEEEeccCcccCeeEEEEEeCCC
Confidence 11 1111111 12244568888876 699999999998777666554332 389999999999999999999998
Q ss_pred eeE-EEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEE
Q psy16852 388 GEA-VAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466 (579)
Q Consensus 388 g~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~ 466 (579)
|.. ...+.|.|... |+.....+....+..|+.++|.|.+.|.|.|.+.|+++|..+..+ ..
T Consensus 366 g~~~s~~~~l~V~~~-----p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~~-------------~~ 427 (642)
T 1e07_A 366 SVDHSDPVILNVLYG-----PDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT-------------QE 427 (642)
T ss_pred CCcceeeEEEEEEcC-----CCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCCC-------------ce
Confidence 864 34577888753 222233345667889999999999999999999999999887432 35
Q ss_pred EEEccccCCCceeEEEEeeccee--------e------------------------------------------------
Q psy16852 467 LSISEATPQDEAVYSVKASSTET--------K------------------------------------------------ 490 (579)
Q Consensus 467 l~i~~~~~~d~g~y~c~~~~~~~--------~------------------------------------------------ 490 (579)
|.|.++...|.|.|+|.+.|... .
T Consensus 428 L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~~~~~i~W~~~g~~l 507 (642)
T 1e07_A 428 LFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSL 507 (642)
T ss_pred EEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEECCCCCcEEEEEECCEeC
Confidence 99999999999999999998531 0
Q ss_pred -----eeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEE-EEEEEEeeCCcccccccCCccccCCCceEEecCCcEEE
Q psy16852 491 -----IMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC-TATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLF 564 (579)
Q Consensus 491 -----~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~~~~~~v~~~p~~~~~~~~~~~~~g~~~~l 564 (579)
+......+.|+|.++..+|+|.|+|.|.|..|.... .+.|.|. ..|+.+...+.+..+..|+.++|
T Consensus 508 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~--------~~p~~~~~~~~~~~v~~g~~~~l 579 (642)
T 1e07_A 508 PVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVL--------YGPDTPIISPPDSSYLSGANLNL 579 (642)
T ss_pred CCCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEE--------eCCCcceecCCceeEEcCCcEEE
Confidence 001112458999999999999999999999997544 6788875 23445666778889999999999
Q ss_pred EEEeccceeecccc
Q psy16852 565 TAQVGYSERLEIPL 578 (579)
Q Consensus 565 ~C~~~~~~~~~~~~ 578 (579)
.|.+.++|++.|.|
T Consensus 580 ~C~~~g~p~p~v~W 593 (642)
T 1e07_A 580 SCHSASNPSPQYSW 593 (642)
T ss_pred EEEeccCCCCeEEE
Confidence 99999999998877
No 4
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=100.00 E-value=8.4e-56 Score=473.25 Aligned_cols=483 Identities=23% Similarity=0.329 Sum_probs=371.5
Q ss_pred CCcccccc--CceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEe------cCCCCEEEEEeCCEEEEEEcCCCCCCCEEE
Q psy16852 6 APRFIEKI--QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTEL------HATEHYLITTVESVSTLEIINPTKEDIGVY 77 (579)
Q Consensus 6 ~p~~~~~p--~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 77 (579)
+|.+...+ ....+.+|+.++|.|.+.|.|.+.+.|+|++... ....+.. .. ..+|.|.+++.+|+|.|
T Consensus 246 ~P~i~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~--~~--~~~L~i~~v~~~D~G~Y 321 (816)
T 3dmk_A 246 VPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVK--QV--SGTLIIKDAVVEDSGKY 321 (816)
T ss_dssp CCBCCGGGGEEEEEECTTSCEEECCCCBCSSCCEEEEEEECTTSSCEEECCCSSSEE--EE--TTEEEECSCCGGGCEEE
T ss_pred CCccccccCccceEEeCCCeEEEEEEeeecCCCeEEEEeCCCCCccCcceecCCceE--ec--cceEEECCCCHhHCEEE
Confidence 56665433 4578999999999999999999999999954321 1222221 11 24899999999999999
Q ss_pred EEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEc
Q psy16852 78 TCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFN 157 (579)
Q Consensus 78 ~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~ 157 (579)
+|.|.|..|.......+.|..+ +.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....
T Consensus 322 ~C~a~n~~g~~~~~~~l~V~~~------~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~------- 388 (816)
T 3dmk_A 322 LCVVNNSVGGESVETVLTVTAP------LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE------- 388 (816)
T ss_dssp EEEEECSSCEEEEEEEEEECEE------EEEEEESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCCS-------
T ss_pred EEEEEcCCCceEEEEEEEEcCC------CceeeCCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCCC-------
Confidence 9999999998877778887643 234444566778899999999999999999999999999875432
Q ss_pred CCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc
Q psy16852 158 PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG 237 (579)
Q Consensus 158 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~ 237 (579)
..|.|.+++.+|+|.|+|.+.|..+....+..+.+.. ...+|.+...+....+.+|+.+.|.|.+.|
T Consensus 389 -----~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~--------~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g 455 (816)
T 3dmk_A 389 -----SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGG--------RFDPPVIRQAFQEETMEPGPSVFLKCVAGG 455 (816)
T ss_dssp -----SEEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCC--------SSCCCEEEEECCCEEECSSSCEEEEEEEEC
T ss_pred -----CEEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEcc--------ccCCCceEecCcceEEcCCCCEEEEEEEec
Confidence 3699999999999999999999988776666665531 135677777677778899999999999999
Q ss_pred cCCCeEEEEECCEEeccCce-EE----e---CCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeee
Q psy16852 238 TPTPEVKWFKNGKEIVSKDI-ET----K---DNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMD 309 (579)
Q Consensus 238 ~p~~~v~W~~~~~~i~~~~~-~~----~---~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~ 309 (579)
.|.+.+.|+++|..+..... .. . .....|.|.++..+|+|.|+|.|.|..|....+..+.|...+ .+...
T Consensus 456 ~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p--~~~~~ 533 (816)
T 3dmk_A 456 NPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP--YIRQM 533 (816)
T ss_dssp SSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSC--EECCC
T ss_pred CCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCC--eeEcc
Confidence 99999999999999876541 11 1 123579999999999999999999999988777777665332 11100
Q ss_pred eeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccC-CCCCEEEEEEEEcCce
Q psy16852 310 VRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVF-PENAGLYSCTAVNPVG 388 (579)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g 388 (579)
- ...........+.|.+.|.|.+.+.|++++..+......... .++ .|.|.++. .+|+|.|+|.|.|..|
T Consensus 534 ~-----~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~--~~~--~l~i~~v~~~~d~G~Y~C~a~n~~g 604 (816)
T 3dmk_A 534 E-----KKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVF--PNG--TLIIENVERNSDQATYTCVAKNQEG 604 (816)
T ss_dssp C-----CEEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEEC--TTS--EEEESSCCHHHHCEEEEEEEEESSS
T ss_pred C-----CeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEEe--cCC--eEEEEecCccccCEEEEEEEEECCC
Confidence 0 000111222334578889999999999999998876655443 223 79999998 5899999999999988
Q ss_pred eE-EEEEEEEEEecccCCCCCeee-cCCCceeeecCCCeEEEEEEEeeCCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeE
Q psy16852 389 EA-VAAATLAVEEKEESGEAPKFT-KPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGEC 465 (579)
Q Consensus 389 ~~-~~~~~l~v~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~ 465 (579)
.. ...+.+.|.. +|.+. .......+..|+.++|.|.+.+.|.+ .+.|+++|..+..+.++.+..
T Consensus 605 ~~~~~~~~v~v~~------~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~------- 671 (816)
T 3dmk_A 605 YSARGSLEVQVMV------LPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSR------- 671 (816)
T ss_dssp CEEEEEEEEEEEC------CCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEE-------
T ss_pred ceeeeeEEEEEec------CCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEE-------
Confidence 54 4456676665 33333 23344568899999999999876665 999999998885544333211
Q ss_pred EEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEeeCCcccccccCC
Q psy16852 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESP 545 (579)
Q Consensus 466 ~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~v~~~p 545 (579)
.....+.|.|.++..+|+|.|+|.|.|..|....++.|.|. .||
T Consensus 672 ---------------------------~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~---------~~P 715 (816)
T 3dmk_A 672 ---------------------------VGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY---------VPP 715 (816)
T ss_dssp ---------------------------ETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEE---------EEE
T ss_pred ---------------------------cCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEE---------eCC
Confidence 12345679999999999999999999999999999988864 788
Q ss_pred ccccCCCceEEecCCcEEEEEEeccceeecccc
Q psy16852 546 RFIKTPETAKVMDGQSVLFTAQVGYSERLEIPL 578 (579)
Q Consensus 546 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~ 578 (579)
.+...+....+..|++++|.|.+.+.|++.|.|
T Consensus 716 ~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W 748 (816)
T 3dmk_A 716 RWILEPTDKAFAQGSDAKVECKADGFPKPQVTW 748 (816)
T ss_dssp EEEECCCCEEEETTCCEEEECEEEEESCCEEEC
T ss_pred ceeeecccceecCCCcEEEEEEEecCCCCeEEE
Confidence 888888899999999999999999999999887
No 5
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=100.00 E-value=2.5e-53 Score=441.69 Aligned_cols=474 Identities=17% Similarity=0.237 Sum_probs=350.6
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG 85 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 85 (579)
+|.+.. +....+.+|+.++|.|.+.+ |.+.+.|+++|..+..+.++... .....|.|.+++.+|+|.|+|.|.|..
T Consensus 112 ~p~i~~-~~~~~v~~g~~v~l~C~~~~-p~~~v~W~~~g~~l~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 187 (642)
T 1e07_A 112 KPSISS-NNSKPVEDKDAVAFTCEPET-QDATYLWWVNNQSLPVSPRLQLS--NGNRTLTLFNVTRNDTASYKCETQNPV 187 (642)
T ss_pred CCcEEc-cCceeEecCCcEEEEEECCC-CCeeEEEEECCeECCCCCceEEc--CCCCEEEEeCCCcccCeeEEEEEecCC
Confidence 455544 34566889999999999988 78899999999999877665443 334689999999999999999999987
Q ss_pred eee-EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEE
Q psy16852 86 GVA-TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 164 (579)
Q Consensus 86 g~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (579)
|.. +..+.|.|...+. .....+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. ...
T Consensus 188 ~~~~s~~~~l~V~~~p~-----~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~i~W~~~g~~i~~-------------~~~ 249 (642)
T 1e07_A 188 SARRSDSVILNVLYGPD-----APTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQS-------------TQE 249 (642)
T ss_pred CCcccceEEEEEEeCCC-----CcEEecCCcccccCCEEEEEEEcCCCCCcEEEEEECCeEccc-------------CCc
Confidence 754 3457777765431 122234456678999999999999999999999999887632 135
Q ss_pred EEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEE
Q psy16852 165 LSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVK 244 (579)
Q Consensus 165 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~ 244 (579)
|.|.+++.+|+|.|+|.+.|..|....+..+.+.+... ..+|.+.. .....+..|+.+.|.|.+.+.| +.+.
T Consensus 250 L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~------~~~p~i~~-~~~~~~~~g~~v~l~C~~~~~p-~~v~ 321 (642)
T 1e07_A 250 LFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAE------PPKPFITS-NNSNPVEDEDAVALTCEPEIQN-TTYL 321 (642)
T ss_pred eEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEcc------CCCCEEEc-CCceeEecCCcEEEEEECCCCC-ccEE
Confidence 99999999999999999999888665544444432211 12233332 2334456688899999998876 6999
Q ss_pred EEECCEEeccCc-eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeE-EEEEEEEEeccceeeeeeeeeeccccCceee
Q psy16852 245 WFKNGKEIVSKD-IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEAR-TSGSVTITVAEAETVMMDVRVESHPTASFQW 322 (579)
Q Consensus 245 W~~~~~~i~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~ 322 (579)
|+++|+.+.... ......+..|.|.++..+|+|.|+|.|.|..|... ..+.+.|...+... .+.. ........
T Consensus 322 W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~-~~~~----~~~~~~~g 396 (642)
T 1e07_A 322 WWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDP-TISP----SYTYYRPG 396 (642)
T ss_pred EEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCC-eecC----CceEecCC
Confidence 999999886544 33334457899999999999999999999988643 33555554332211 1110 01111122
Q ss_pred eecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecc
Q psy16852 323 FIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKE 402 (579)
Q Consensus 323 ~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~ 402 (579)
....+.|.+.|.|.+.++|+++|..+.... .|.|.++..+|+|.|+|.|.|..|....+..+.+....
T Consensus 397 ~~~~l~C~~~g~p~~~i~W~~~g~~~~~~~------------~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~ 464 (642)
T 1e07_A 397 VNLSLSCHAASNPPAQYSWLIDGNIQQHTQ------------ELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSA 464 (642)
T ss_pred CcEEEEEEcCccCCCeEEEEECCEEcCCCc------------eEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEec
Confidence 334456889999999999999998876432 69999999999999999999999877665444443321
Q ss_pred cCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEE
Q psy16852 403 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 482 (579)
Q Consensus 403 ~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 482 (579)
. ..+|.+.. .....+.+|+.++|.|.+. .|.+.+.|+++|..+..+.++.+. .....|.|.++...|+|.|+|
T Consensus 465 ~-~~~p~i~~-~~~~~v~~g~~v~l~C~~~-~~~~~i~W~~~g~~l~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C 537 (642)
T 1e07_A 465 E-LPKPSISS-NNSKPVEDKDAVAFTCEPE-AQNTTYLWWVNGQSLPVSPRLQLS----NGNRTLTLFNVTRNDARAYVC 537 (642)
T ss_pred c-CCCceEec-CCceeecCCCeEEEEEECC-CCCcEEEEEECCEeCCCCCcEEEc----CCCcEEEEeecChhcCceEEE
Confidence 1 12455543 3446688999999999999 588899999999999887776653 334689999999999999999
Q ss_pred Eeecceee---------------------------------------------e--eeeC----CeeEEEEeecccccce
Q psy16852 483 KASSTETK---------------------------------------------I--MTDG----NRSVLLISKITRDQIG 511 (579)
Q Consensus 483 ~~~~~~~~---------------------------------------------~--~~~~----~~~~l~i~~~~~~d~G 511 (579)
.+.|.... + ..++ ....|.|.++..+|+|
T Consensus 538 ~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~~~~L~i~~~~~~d~G 617 (642)
T 1e07_A 538 GIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQVLFIAKITPNNNG 617 (642)
T ss_pred EeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEcCCcEEEEEEeccCCCCeEEEEECCEECccCceEEECcccccCCe
Confidence 99985310 0 0000 1257999999999999
Q ss_pred eEEEEEEeCCeeEEEEEEEEEe
Q psy16852 512 DVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 512 ~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.|+|.|.|..|....++.|.|.
T Consensus 618 ~Y~C~a~N~~G~~~~s~~l~V~ 639 (642)
T 1e07_A 618 TYACFVSNLATGRNNSIVKSIT 639 (642)
T ss_pred EEEEEEEecccCcceeEEEEEE
Confidence 9999999999999999998875
No 6
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=100.00 E-value=2e-52 Score=447.12 Aligned_cols=460 Identities=22% Similarity=0.302 Sum_probs=353.7
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG 85 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 85 (579)
||.+...|....+.+|++++|.|.+.+.|.+.+.|+++|..+.... ..|.|.+++.+|+|.|+|.+.|..
T Consensus 343 ~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~----------~~L~i~~v~~~d~G~Y~C~a~n~~ 412 (816)
T 3dmk_A 343 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQCFVRNDR 412 (816)
T ss_dssp EEEEEEESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCCS----------SEEEESSCCGGGCEEEEEEEECSS
T ss_pred CCceeeCCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCCC----------CEEEEcCCCHHHCEEEEEEEECCC
Confidence 5566677888999999999999999999999999999999886543 469999999999999999999998
Q ss_pred eeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEc---CCCCe
Q psy16852 86 GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFN---PTTGE 162 (579)
Q Consensus 86 g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~---~~~~~ 162 (579)
|....+..+.|... ..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+........... .....
T Consensus 413 g~~~~~~~l~v~~~---~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~ 489 (816)
T 3dmk_A 413 ESAEASAELKLGGR---FDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVV 489 (816)
T ss_dssp CEEEECCEEECCCS---SCCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEE
T ss_pred CcEEEEEEEEEccc---cCCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcE
Confidence 88777777777543 2356666666777889999999999999999999999999999876665443321 11223
Q ss_pred EEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCe
Q psy16852 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPE 242 (579)
Q Consensus 163 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~ 242 (579)
..|.|.++..+|+|.|+|.+.|..|....+..+.+. .+|.+ .......+.+|+.+.|.|.+.+.|.+.
T Consensus 490 ~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~-----------~~p~~-~~~~~~~v~~G~~v~l~C~~~g~p~~~ 557 (816)
T 3dmk_A 490 SYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVY-----------GLPYI-RQMEKKAIVAGETLIVTCPVAGYPIDS 557 (816)
T ss_dssp EEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEEC-----------SSCEE-CCCCCEEEETTCCEEEECCEECSSEEE
T ss_pred EEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEe-----------cCCee-EccCCeEEecCCeEEEEEEecCCCCCE
Confidence 579999999999999999999999988777777764 34433 333445678999999999999999889
Q ss_pred EEEEECCEEeccCceEEeCCeEEEEEcccC-CCCCeEEEEEEEcCCeee-EEEEEEEEEeccceeeeeeeeeeccccCce
Q psy16852 243 VKWFKNGKEIVSKDIETKDNVTKLVIKQTT-KKTTGKYEIRVVNEAGEA-RTSGSVTITVAEAETVMMDVRVESHPTASF 320 (579)
Q Consensus 243 v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~a~n~~g~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~ 320 (579)
+.|++++..+.............|.|.++. .+|+|.|+|.|.|..|.. .....+.|...+ .+... ........
T Consensus 558 i~W~k~~~~l~~~~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p--~~~~~---~~~~~~~~ 632 (816)
T 3dmk_A 558 IVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLP--RIIPF---AFEEGPAQ 632 (816)
T ss_dssp EEEEETTEESCCSTTEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCC--CCBCC---CCCSSCEE
T ss_pred EEEEECCeEcccCCceEEecCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCC--ccccc---cccccccC
Confidence 999999999876553333344579999998 589999999999998853 334444444322 11110 00011112
Q ss_pred eeeecCeeEEEeeeCC-CeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEE
Q psy16852 321 QWFIHSEPVVVTGKPT-PLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVE 399 (579)
Q Consensus 321 ~~~~~~~~~~~~g~p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 399 (579)
......+.|.+.+.|. +.+.|+++|..+...............+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 633 ~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 712 (816)
T 3dmk_A 633 VGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY 712 (816)
T ss_dssp SSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEE
T ss_pred CCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEE
Confidence 2333445577766555 499999999998766555555555667799999999999999999999999999999999998
Q ss_pred ecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCcee
Q psy16852 400 EKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAV 479 (579)
Q Consensus 400 ~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~ 479 (579)
. +|.+...+....+..|+.++|.|.+.|.|.|.++|++++..+..... .+ ...+
T Consensus 713 ~------~P~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~-~~----------------~~~~--- 766 (816)
T 3dmk_A 713 V------PPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYK-DL----------------KKSD--- 766 (816)
T ss_dssp E------EEEEEECCCCEEEETTCCEEEECEEEEESCCEEECCEECSSSTTCCB-CC----------------CCBT---
T ss_pred e------CCceeeecccceecCCCcEEEEEEEecCCCCeEEEEecCCCCCcccc-cc----------------ccCC---
Confidence 6 77787777788899999999999999999999999998765432211 00 0000
Q ss_pred EEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 480 YSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 480 y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.+.. ..+.|.|.+++.+|+|.|+|.|.|..|.+..++.+..+
T Consensus 767 ----------~~~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~v~~~~~ 808 (816)
T 3dmk_A 767 ----------NIRV--EEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISV 808 (816)
T ss_dssp ----------TEEE--ETTEEEECSCCGGGCEEEEEEEECSSSSCEEEEEEEEE
T ss_pred ----------CEEe--cCCEEEECcCChhhCeEEEEEEEeCCCCCcEEEEEEEe
Confidence 0000 12359999999999999999999999999999888765
No 7
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=100.00 E-value=1.3e-52 Score=425.49 Aligned_cols=460 Identities=13% Similarity=0.138 Sum_probs=312.3
Q ss_pred CcCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852 2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81 (579)
Q Consensus 2 ~~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (579)
....||.|...+.++.+.+|+.++|.|.+.+ .++|+++|..+. .......|.|.+++.+|+|.|+|.+
T Consensus 32 ~v~~pP~i~~~~~~~~v~~G~~v~l~C~~~~----~v~W~~~~~~~~--------~~~~~~~L~I~~~~~~D~G~Y~C~a 99 (524)
T 2ec8_A 32 GEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDET--------NENKQNEWITEKAEATNTGKYTCTN 99 (524)
T ss_dssp -CCCCCEEESCCSEEECCTTSCEEEEEECTT----EEEEEEESSSCC--------EEECSSEEEESSCCSTTCEEEEEEE
T ss_pred CCCCCCccCCCCceEEEeCCCeEEEEEeCCc----eEEEcCCCcccc--------ccCccceEEEcccchhhCEEEEEee
Confidence 3467899888888999999999999999875 899999998761 1224478999999999999999999
Q ss_pred EcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEE-CCEEccCCCCceEEEcCCC
Q psy16852 82 TNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYR-GKEEILPDNGHTMEFNPTT 160 (579)
Q Consensus 82 ~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~ 160 (579)
.| |. ..++.|.|..+ +.+...+....+.+|+.+.|.|.+.+.+.+.+.||+ ++..+..+.+.. ....
T Consensus 100 ~n--g~-~~~~~l~V~~p------~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~~~--~~~~- 167 (524)
T 2ec8_A 100 KH--GL-SNSIYVFVRDP------AKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFI--PDPK- 167 (524)
T ss_dssp TT--SC-EEEEEEECCCS------SCSBCCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCEEE--EETT-
T ss_pred cC--Cc-ceEEEEEECCC------CcccccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCcee--ECCC-
Confidence 88 43 55666666532 223345566778899999999999876668999998 666665443332 2222
Q ss_pred CeEEEEECcCCCCCCe-EEEEEEEcCCceeEE-EEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc
Q psy16852 161 GECVLSISEATPQDEA-VYSVKAVNTFGRAEC-RANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT 238 (579)
Q Consensus 161 ~~~~l~i~~~~~~d~G-~Y~C~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~ 238 (579)
..|.|.+++.+|+| .|+|.+.|..+.... ...+.+.. ....+|.+...+....+.+|+.+.|.|.+.+.
T Consensus 168 --~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~-------~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~ 238 (524)
T 2ec8_A 168 --AGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRP-------AFKAVPVVSVSKASYLLREGEEFTVTCTIKDV 238 (524)
T ss_dssp --TEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEEC-------CCCSCCEEECSCSEEEEETTSCEEEEEEEEES
T ss_pred --ccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEe-------CCCCCCcEEecCCcceEEcCCcEEEEEEEecC
Confidence 26999999999999 999999987654422 33343321 01256777777777789999999999999998
Q ss_pred CCCe-EEEEECCEEe--ccCc-eE-----EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeee
Q psy16852 239 PTPE-VKWFKNGKEI--VSKD-IE-----TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMD 309 (579)
Q Consensus 239 p~~~-v~W~~~~~~i--~~~~-~~-----~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~ 309 (579)
|.+. +.|++++..+ .... .. .......|.|.++..+|+|.|+|.|.|..|.......+.|. ..+.+.+.
T Consensus 239 p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~--~~p~~~~~ 316 (524)
T 2ec8_A 239 SSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVV--DKGFINIF 316 (524)
T ss_dssp STTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEE--SSCEEEEE
T ss_pred CCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEe--ccCceEee
Confidence 8885 9999999873 2211 11 12345789999999999999999999999988776666665 33333322
Q ss_pred eeeeccccCceeeeecCeeEEEeeeCCCe-EEEEECCEEccCCCeEEEEECCC----CeEEEEEcccCCCCCEEEEEEEE
Q psy16852 310 VRVESHPTASFQWFIHSEPVVVTGKPTPL-VTWSHDGTPMKEGKEVTIYQDTD----GLCKLAISEVFPENAGLYSCTAV 384 (579)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~g~p~~~-i~W~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~ 384 (579)
... .............+.|.+.|.|.+. +.|+++|..+............+ ..+.|.|.++..+|+|.|+|.|.
T Consensus 317 ~~~-~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 395 (524)
T 2ec8_A 317 PMI-NTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVS 395 (524)
T ss_dssp ESS-CSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEE
T ss_pred cCC-CceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEE
Confidence 110 0000111112234568999999999 99999999887765322212222 34689999999999999999999
Q ss_pred cCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCe
Q psy16852 385 NPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 464 (579)
Q Consensus 385 n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~ 464 (579)
|..|....++.|.|.. +|.+...+. ..+| +|.|.+.|.|.|.|.|++++..+........ . .+..
T Consensus 396 N~~g~~~~~~~l~V~~------~P~i~~~~~---~~~g---~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~-~--~~~~ 460 (524)
T 2ec8_A 396 NSDVNAAIAFNVYVNT------KPEILTYDR---LVNG---MLQCVAAGFPEPTIDWYFCPGTEQRCSASVL-P--VDVQ 460 (524)
T ss_dssp CSSCEEEEEEEEEECE------EEEEEEEEC---CSSS---CEEEEEEEESCCEEECCCC----------CC-C--CCCC
T ss_pred ecCceEEEEEEEEEec------CCeEeeccc---CcCc---EEEEEEEeecCCEEEEEECCCcccccccccC-C--CCce
Confidence 9999999999999976 666664333 3455 9999999999999999999876532100000 0 0000
Q ss_pred EEEEEccccCCCceeEEEEeecceeeeeeeCCeeE-EEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 465 CVLSISEATPQDEAVYSVKASSTETKIMTDGNRSV-LLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 465 ~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~-l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
. ... ....++.... +.+.....+|+|.|+|.|.|.+|....++.|.|+
T Consensus 461 --~--~~~-----------------~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 509 (524)
T 2ec8_A 461 --T--LNS-----------------SGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFK 509 (524)
T ss_dssp --C--CCC------------------CCSSSCEEEEEEECCCSCCC-----CEEECSSCEEECCCCCCC-
T ss_pred --e--eee-----------------ccCCCCcceEEEEEEEEEccCCEEEEEEEEcCCCceEEEEEEEEe
Confidence 0 000 0001111111 1233334689999999999999999999999876
No 8
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=100.00 E-value=5.6e-51 Score=407.97 Aligned_cols=445 Identities=15% Similarity=0.109 Sum_probs=286.6
Q ss_pred ccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEE
Q psy16852 12 KIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCS 91 (579)
Q Consensus 12 ~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~ 91 (579)
.+.++.|.+|++++|.|.+.+.+..++.|++++..+.....+.. ......+|.|.+++.+|+|.|+|.|.|..+.....
T Consensus 54 ~~~~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~~-~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~ 132 (527)
T 3qs9_E 54 EAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL-QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTIL 132 (527)
T ss_dssp --CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEE
T ss_pred eeeeEEEeccccEEEEEEEecCCceeEEEEecCCccCcccccCC-CcceEEEEEECcCChhhCeeEEEEEEeccccEEEE
Confidence 45589999999999999998877789999999998765554432 12234679999999999999999999988877666
Q ss_pred EEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCC
Q psy16852 92 ANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEAT 171 (579)
Q Consensus 92 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 171 (579)
..+.|.. ..+.....+.....|+.+.|.|.+.|+|.|.|.|++++..+..... ............+.
T Consensus 133 ~~v~v~~-------~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~~------~~~~~~~~~~~~~~ 199 (527)
T 3qs9_E 133 FTVSIRN-------TLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKE------ESPAVVKKEEKVLH 199 (527)
T ss_dssp EEEEEC------------CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------------CEEECCSEEC
T ss_pred EEEEECC-------ceeeccCCCcEEecCCceEEEEEEceecCCeEEEEECCCCCccccc------cCCcEEEEeeeecc
Confidence 6666531 1111122233445678889999999999999999998775432110 00111223333455
Q ss_pred CCCCeEEEEEEEcCCceeEEE-EEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEE-ccCCCeEEEEECC
Q psy16852 172 PQDEAVYSVKAVNTFGRAECR-ANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYT-GTPTPEVKWFKNG 249 (579)
Q Consensus 172 ~~d~G~Y~C~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~ 249 (579)
..|+|.|+|.|.|..|..... ..+.+. .+|.+ ++....+.+|+.+.|.|.+. +.|.+.+.|++++
T Consensus 200 ~~d~G~Y~C~A~N~~G~~~~~~~~l~V~-----------~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g 266 (527)
T 3qs9_E 200 ELFGTDIRCCARNELGRECTRLFTIDLN-----------QTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELEN 266 (527)
T ss_dssp CCCSSCEEEEEECSSCEEEEECEEEESS-----------SCCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSS
T ss_pred ccCCEEEEEEEEeCCCcccceEEEEEEe-----------ccCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECC
Confidence 889999999999998876553 333332 23332 34566788999999999996 8999999999999
Q ss_pred EEeccCceE----E-----eCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeeccccCce
Q psy16852 250 KEIVSKDIE----T-----KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASF 320 (579)
Q Consensus 250 ~~i~~~~~~----~-----~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~ 320 (579)
..+...... . ......|.|.+++.+|+|.|+|.|.|. ...++.+. +...+.+.+.... ......
T Consensus 267 ~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~--V~~~p~i~~~~~~--~~~~v~ 339 (527)
T 3qs9_E 267 KALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVT--IVEKGFINATNSS--EDYEID 339 (527)
T ss_dssp SCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEE--EC--CEEECCCSC--CEECCC
T ss_pred EECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEE--EEccCccccccCc--ccEEEc
Confidence 877554211 1 122356999999999999999999887 33344444 4333333222110 001111
Q ss_pred eeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEe
Q psy16852 321 QWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400 (579)
Q Consensus 321 ~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 400 (579)
......+.|.+.|.|.|.++|+++|..+....... .....|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus 340 ~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~-----~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~ 414 (527)
T 3qs9_E 340 QYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL-----DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRR 414 (527)
T ss_dssp TTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBC-----SSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--C
T ss_pred CCCeEEEEEEEEecCCCEEEEEECCEECcCCcccc-----cCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEec
Confidence 22334456999999999999999999987654321 1223799999999999999999999999999999998875
Q ss_pred cccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeE
Q psy16852 401 KEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVY 480 (579)
Q Consensus 401 ~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 480 (579)
+|.+..... ..+|.|.+.|.|.|.|.|++++.......... ..+... ......
T Consensus 415 ------~P~i~~~~~--------~~~l~C~a~g~P~p~i~W~~~~~~~~~~~~~~-----~~~~~~---~~~~~~----- 467 (527)
T 3qs9_E 415 ------KPQVLAEAS--------ASQASCFSDGYPLPSWTWKKCSDKSPNCTEEI-----TEGVWN---RKANRK----- 467 (527)
T ss_dssp ------CCEEEECCC--------CE---EEEECSSCCEEEEECCC-----CCCCC-----CCCEEE---C----------
T ss_pred ------CCeEEEeCC--------CCEEEEEEEEEcCCeEEEEECCCCcCCCcccc-----ccccce---eccccc-----
Confidence 777764432 23689999999999999999876542211100 000000 000000
Q ss_pred EEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 481 SVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 481 ~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
........++|.|.. .+|+|.|+|.|.|.+|.....+.|.|.
T Consensus 468 ---------~~~~~~~~s~L~i~~--~~d~G~Y~C~A~N~~G~~~~~~~L~V~ 509 (527)
T 3qs9_E 468 ---------VFGQWVSSSTLNMSE--AIKGFLVKCCAYNSLGTSCETILLNSP 509 (527)
T ss_dssp -------------CEEEEECCCCC--SSCSCEEEEEEECSSCEEEEEEEC---
T ss_pred ---------cCCceEEEEEEEEEE--cCCCEEEEEEEEeCCCCceeEEEEecC
Confidence 000111223455544 469999999999999999999999764
No 9
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=100.00 E-value=1.2e-49 Score=409.78 Aligned_cols=462 Identities=13% Similarity=0.139 Sum_probs=320.1
Q ss_pred ccccCceeeeCCCCEEEEEEEEeeCCC---eeEEEECCEEec--------------CCCCEEEEE--eCCEEEEEEcCCC
Q psy16852 10 IEKIQPVVSHQEQPALFTCKVEGHPLP---TMTWQKDGTELH--------------ATEHYLITT--VESVSTLEIINPT 70 (579)
Q Consensus 10 ~~~p~~~~v~~G~~~~l~C~~~~~~~~---~v~W~~~g~~~~--------------~~~~~~~~~--~~~~~~L~i~~~~ 70 (579)
+..|.++.+.+|+.++|.|.+.+.+.+ .+.|+|++..+. ...++.+.. ..+...|+|.+++
T Consensus 4 i~~P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~ 83 (585)
T 2ocw_A 4 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLS 83 (585)
T ss_pred ccCcceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCC
Confidence 346888999999999999999887643 799999985321 112333332 2345789999999
Q ss_pred CCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeec-CCeEEEEECCEEcc--
Q psy16852 71 KEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP-TPSICWYRGKEEIL-- 147 (579)
Q Consensus 71 ~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~~~~~~~-- 147 (579)
.+|+|.|+|.+.+..+.....+.|.|.. +|.+...+....+.+|+.+.|.|.+.+.+ .+.+.|++++....
T Consensus 84 ~~D~G~Y~C~~~n~~~~~~~~~~l~V~~------~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~ 157 (585)
T 2ocw_A 84 QDDSGRYKCGLGINSRGLSFDVSLEVSQ------GPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVL 157 (585)
T ss_pred cccCEEEEEEcccCCCCceEEEEEEEec------CccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceE
Confidence 9999999999999888777778888864 44556667778899999999999998644 57899999876421
Q ss_pred --C---------CCCceEEEc-CCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEe
Q psy16852 148 --P---------DNGHTMEFN-PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIV 215 (579)
Q Consensus 148 --~---------~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~ 215 (579)
. ..+..+..+ ...+..+|.|.+++.+|+|.|+|.+.|..+.......+.|.. .+
T Consensus 158 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~----------~~---- 223 (585)
T 2ocw_A 158 VIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLK----------PE---- 223 (585)
T ss_pred EecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEcc----------CC----
Confidence 1 122223222 223456899999999999999999999888776666666641 11
Q ss_pred ccCCceeeCCCCeEEEEEEEEccCC---CeEEEE-ECCE----Eec---------cCceEEe----CCeEEEEEcccCCC
Q psy16852 216 RPLQALLVPKDSTVTLEAEYTGTPT---PEVKWF-KNGK----EIV---------SKDIETK----DNVTKLVIKQTTKK 274 (579)
Q Consensus 216 ~~~~~~~~~~g~~~~l~C~~~~~p~---~~v~W~-~~~~----~i~---------~~~~~~~----~~~~~l~i~~~~~~ 274 (579)
+..+.+.+|+.+.|.|.+ +.+. +.+.|+ ++|. .+. ....... .+...|.|.++..+
T Consensus 224 --p~~~~~~~G~~v~l~C~~-~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~ 300 (585)
T 2ocw_A 224 --PELVYEDLRGSVTFHCAL-GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKE 300 (585)
T ss_pred --CceeEEcCCCcEEEEEEc-CCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChh
Confidence 233457789999999997 4443 578886 7773 111 1111111 22337999999999
Q ss_pred CCeEEEEEEEcCCeeeE----EEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeE----EEEE--C
Q psy16852 275 TTGKYEIRVVNEAGEAR----TSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLV----TWSH--D 344 (579)
Q Consensus 275 d~G~y~C~a~n~~g~~~----~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i----~W~~--~ 344 (579)
|+|.|+|.|.|..+... ..+.+.|. ..+.+.... ............+.|.+.|.|.+.+ .|++ +
T Consensus 301 d~G~Y~C~a~n~g~~~~~~~~~~~~l~V~--~~p~~~~~~----~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~ 374 (585)
T 2ocw_A 301 DAGRYLCGAHSDGQLQEGSPIQAWQLFVN--EESTIPRSP----TVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQN 374 (585)
T ss_pred hCEEEEEEEEcCCCccccCceeeEEEEEe--cccccccCC----cceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCC
Confidence 99999999999543321 44555554 222221110 0011112233445688889998877 7999 8
Q ss_pred CE--EccC---------CCeEEEEEC-CCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeec
Q psy16852 345 GT--PMKE---------GKEVTIYQD-TDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTK 412 (579)
Q Consensus 345 ~~--~~~~---------~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~ 412 (579)
|. .+.. ..++.+... ..+..+|.|.++..+|+|.|+|.| |..|.....+.|.|... +|.+..
T Consensus 375 g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~-----~p~~~~ 448 (585)
T 2ocw_A 375 GRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEG-----EPNLKV 448 (585)
T ss_pred CCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecC-----cccccc
Confidence 86 4432 233333322 345567999999999999999999 98898888889998763 344433
Q ss_pred CCCceeeecCCCeEEEEEEE----eeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecce
Q psy16852 413 PLKPVIAEAQSPATLKATVT----GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTE 488 (579)
Q Consensus 413 ~~~~~~~~~g~~~~l~C~~~----g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 488 (579)
+....+.+|+.++|.|.+. |.|.|.|.|+++|..+........ . +.|
T Consensus 449 -~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~-------~-------------~~~-------- 499 (585)
T 2ocw_A 449 -PGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGP-------S-------------KAF-------- 499 (585)
T ss_pred -CCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCC-------C-------------cce--------
Confidence 5667899999999999997 678889999999987754321100 0 000
Q ss_pred eeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEE-EEEEEEeeC
Q psy16852 489 TKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC-TATLSLLPE 535 (579)
Q Consensus 489 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~ 535 (579)
..+..++..+.|+|.++..+|+|.|+|.|.|..|.... .+.|.|..+
T Consensus 500 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~ 547 (585)
T 2ocw_A 500 VNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEER 547 (585)
T ss_pred EEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEee
Confidence 01111334567999999999999999999999996554 488888644
No 10
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=100.00 E-value=1.2e-49 Score=403.50 Aligned_cols=467 Identities=13% Similarity=0.118 Sum_probs=309.7
Q ss_pred cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCE--Ee---c---------CCCCEEEEEeCCEEEEEEcCCCCCCC
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGT--EL---H---------ATEHYLITTVESVSTLEIINPTKEDI 74 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~--~~---~---------~~~~~~~~~~~~~~~L~i~~~~~~d~ 74 (579)
++..|.++.+.+|++++|.|.+.+.+.+.+.|||++. .+ . ...++..........|+|.+++.+|+
T Consensus 3 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 82 (523)
T 2rcj_C 3 VLTQPPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDE 82 (523)
T ss_pred ccccCCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhC
Confidence 3456888999999999999999988888999999752 11 1 12344433345567899999999999
Q ss_pred EEEEEEEEcCCee---eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCC--eEEEEECCEEccCC
Q psy16852 75 GVYTCKATNIGGV---ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPD 149 (579)
Q Consensus 75 G~Y~C~~~~~~g~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~ 149 (579)
|.|+|.|.|..|. ....+.+.|...+ ..+|.+...+....+.+|+.+.|.|.+.+.|++ .|.|++++..+..+
T Consensus 83 G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~--~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~ 160 (523)
T 2rcj_C 83 SDYYCASWNSSDNSYVFGTGTKVTVLGQP--KANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAG 160 (523)
T ss_pred EEEEEEEccCCCccccccCceEEEeccCC--CcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCc
Confidence 9999999987653 2234566665332 234555444445556689999999999887764 99999999877644
Q ss_pred CCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCC
Q psy16852 150 NGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPK 225 (579)
Q Consensus 150 ~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 225 (579)
..........++ .+.|.|.++..+|+|.|+|.|.|..+.......+.+.. ....+|.+........+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~-------~~~~~P~v~~~~~~~~~~~ 233 (523)
T 2rcj_C 161 VETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS-------ASTKGPSVFPLAPSSKSTS 233 (523)
T ss_pred eEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecC-------CCCcCCEEEecCCCccccc
Confidence 322111111122 24699999999999999999999877654444332210 1224455543333345678
Q ss_pred CCeEEEEEEEEcc-CCC-eEEEEECCEEeccCc---eE----EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEE
Q psy16852 226 DSTVTLEAEYTGT-PTP-EVKWFKNGKEIVSKD---IE----TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSV 296 (579)
Q Consensus 226 g~~~~l~C~~~~~-p~~-~v~W~~~~~~i~~~~---~~----~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~ 296 (579)
|+.+.|.|.+.+. |.+ .+.|+++|..+.... .. .....+.|.|.++..+| |.|+|.|.|..|.......+
T Consensus 234 G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l 312 (523)
T 2rcj_C 234 GGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRV 312 (523)
T ss_pred CCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEec
Confidence 9999999999886 777 899999998754211 11 01123589999999999 99999999999876555544
Q ss_pred EEEeccceeeeeeeeeeccccC-ceeeeecCeeEEEeeeCC----CeEEEEECCEEccCCCeEEEEECCCCe----EEEE
Q psy16852 297 TITVAEAETVMMDVRVESHPTA-SFQWFIHSEPVVVTGKPT----PLVTWSHDGTPMKEGKEVTIYQDTDGL----CKLA 367 (579)
Q Consensus 297 ~v~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~g~p~----~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~l~ 367 (579)
.+. ..+.+.+... .... ........+.|.+.|.|+ +.++|+++|..+............++. +.|.
T Consensus 313 ~v~--~~P~~~~~~p---~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~ 387 (523)
T 2rcj_C 313 EPL--SLPSVFLFPP---KPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLT 387 (523)
T ss_pred CCC--cCceEEecCC---CchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEE
Confidence 432 2222221110 0000 122334456788988754 499999999998765433222222222 4699
Q ss_pred EcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCC-CceeeecCCCeEEEEEEEeeCCC--eEEEeeC
Q psy16852 368 ISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPL-KPVIAEAQSPATLKATVTGRPTP--SICWYRG 444 (579)
Q Consensus 368 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~ 444 (579)
|.++..+|+|.|+|.|.|..+.......+.+. .....+|.+...+ ....+. |+.++|.|.+.|.|+| .|.|+++
T Consensus 388 i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~--~~~~~~P~v~~~~~~~~~~~-~~~~~l~C~~~g~~p~~~~v~W~k~ 464 (523)
T 2rcj_C 388 VLHQNWLDGKEYKCKVSNKALPAPIEKTISKA--KGQPREPQVYTLPPSREEMT-KNQVSLTCLVKGFYPSDIAVEWESN 464 (523)
T ss_pred ECHHHhcCCCeEEEEEeCCCCCCceeEEEEcc--cCCCCCCEEEEeCCChHHcc-CCceEEEEEEEeeECCCCEEEEEEC
Confidence 99999999999999999987766544444431 1112366655433 223343 4459999999998766 9999999
Q ss_pred CEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCee
Q psy16852 445 KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523 (579)
Q Consensus 445 ~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 523 (579)
|..+....... ......|.|.+. +.|.+.....+|+|.|+|.|.|....
T Consensus 465 g~~~~~~~~~~----------------~~~~~~gt~~~~--------------~~l~v~~~~~~~~g~Y~C~a~n~~l~ 513 (523)
T 2rcj_C 465 GQPENNYKTTP----------------PVLDSDGSFFLY--------------SKLTVDKSRWQQGNVFSCSVMHEALH 513 (523)
T ss_pred CEECCCeeecc----------------ceeCCCCCEEEE--------------EEEEEChHHccCCCeEEEEEEcCCcC
Confidence 99885432111 111233444433 23777777778899999999998543
No 11
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=4.7e-50 Score=398.94 Aligned_cols=426 Identities=18% Similarity=0.190 Sum_probs=295.6
Q ss_pred cccccCceeeeCCCCEEEEEEEEeeCCCee-----EEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTM-----TWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v-----~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
|...|.+..+.+|++++|.|.+.+ |.+.+ .|+|++..+.. . ....|.|.+++. |+| |+|.+.+
T Consensus 2 i~~~P~~~~v~~G~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~~~~-~--------~~~~l~i~~v~~-d~g-Y~C~a~~ 69 (450)
T 1z7z_I 2 TSVSPSKVILPRGGSVLVTCSTSC-DQPMLLGIETPLPKKELLLPG-N--------NRKVYELSNVQE-DSQ-PMCYSNC 69 (450)
T ss_dssp CEEESSEEEEETTEEEEEEEECCS-SCCCEEEECSSSCEEECCSST-T--------TEEEEEEEEECS-CBC-CEEEEEE
T ss_pred cccCCCceEEecCCcEEEEEEccC-CCcccccccceeeecceEecC-C--------CceEEEEEeccc-CCe-eEEEEeC
Confidence 567889999999999999999998 88888 99998875532 2 225799999987 999 9999987
Q ss_pred CCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCC---eEEEEECCEEccCCCCceEEEcCCC
Q psy16852 84 IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP---SICWYRGKEEILPDNGHTMEFNPTT 160 (579)
Q Consensus 84 ~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~i~W~~~~~~~~~~~~~~~~~~~~~ 160 (579)
..+..+..+.|.|... +..+...+.+..+.+|+.+.|.|.+.+.|++ .|.|++++..+...... ...
T Consensus 70 ~~~~~~~~~~l~V~~~-----P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~-----~~~ 139 (450)
T 1z7z_I 70 PDGQSTAKTFLTVYWT-----PERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV-----GEP 139 (450)
T ss_dssp TTEEEEEECEEEEEBC-----CSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC-----TTT
T ss_pred CCCcceeEEEEEEEeC-----CCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeeccccc-----ccc
Confidence 7777777788888753 2223345566778899999999999998887 99999999887543211 122
Q ss_pred CeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeecccc-CCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-
Q psy16852 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTI-DKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT- 238 (579)
Q Consensus 161 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~- 238 (579)
....|.|.+++.+|+|.|+|.+.|..|.........+...... .......+|.+..+ ..+.+|+.+.|.|.+.+.
T Consensus 140 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~---~~v~~G~~v~l~C~~~g~~ 216 (450)
T 1z7z_I 140 AEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSP---RVLEVDTQGTVVCSLDGLF 216 (450)
T ss_dssp EEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECC---SEEETTSEEEEEEEEESCT
T ss_pred cceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCc---eeEEeCCcEEEEEEeeCCC
Confidence 3468999999999999999999988664221111111000000 00001123443322 468899999999999998
Q ss_pred C--CCeEEEEECCEEeccCceEEeCCeEEEE-EcccCCCCCe--EEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeee
Q psy16852 239 P--TPEVKWFKNGKEIVSKDIETKDNVTKLV-IKQTTKKTTG--KYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVE 313 (579)
Q Consensus 239 p--~~~v~W~~~~~~i~~~~~~~~~~~~~l~-i~~~~~~d~G--~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~ 313 (579)
| .+.+.|++++..+.. ..........+. ..++..+|+| .|+|.|.|..|.......+.|...+.+.+.+.
T Consensus 217 P~~~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~---- 291 (450)
T 1z7z_I 217 PVSEAQVHLALGDQRLNP-TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILT---- 291 (450)
T ss_dssp TGGGCEEEEEETTEECCC-EEEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEES----
T ss_pred CCCceEEEEeCCCEeCCc-eEEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEecC----
Confidence 6 679999999998876 222333332222 2267899999 99999999999888888888776544443322
Q ss_pred ccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCce----e
Q psy16852 314 SHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG----E 389 (579)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g----~ 389 (579)
...........+.|.+. |.+.++| +|.++... .....|.|..+..+|+|.|+|.|.|..+ .
T Consensus 292 --~~~v~~G~~v~l~C~~~--p~p~i~W--~g~~~~~~---------~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~ 356 (450)
T 1z7z_I 292 --KPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPL---------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIH 356 (450)
T ss_dssp --CSEEETTCEEEEEEEC-----------------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEE
T ss_pred --CeeEeCCCcEEEEEecC--CCCEeEE--CCEEcCCC---------CceEEEEEecCcccCCceEEEEEEcCCCCcccc
Confidence 11122223334457766 8899999 77766211 1223799999999999999999997655 3
Q ss_pred EEEEEEEEEEecccCCCCCeeecCC--CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEE
Q psy16852 390 AVAAATLAVEEKEESGEAPKFTKPL--KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467 (579)
Q Consensus 390 ~~~~~~l~v~~~~~~~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l 467 (579)
...++.|.|.. +|.+.... ....+.+|+.++|.|.+.|.|.|.+.|+|+|..+...+.
T Consensus 357 ~~~~~~l~V~~------~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~g~-------------- 416 (450)
T 1z7z_I 357 KNQTRELRVLY------GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE-------------- 416 (450)
T ss_dssp EEEEEECEEEE------EEECCSTTSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTS--------------
T ss_pred cceeEEEEEec------CCceeeccCCCceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCCCC--------------
Confidence 34677888876 55555443 556899999999999999999999999999874422110
Q ss_pred EEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 468 ~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.+ .++.+|+|.|+|.|.|..|....++.|.|+
T Consensus 417 -------------------------------~~---~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 448 (450)
T 1z7z_I 417 -------------------------------SV---TVTRDLEGTYLCRARSTQGEVTREVTVNVL 448 (450)
T ss_dssp -------------------------------CE---ECCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred -------------------------------eE---eEehhhCeEEEEEEEeCCCceeEEEEEEEE
Confidence 02 577899999999999999999999999986
No 12
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=100.00 E-value=2.6e-51 Score=436.80 Aligned_cols=462 Identities=19% Similarity=0.256 Sum_probs=65.7
Q ss_pred cccccc-CceeeeCCCCEEEEEEEEee--CCCeeEEEECCEEecCCCCEEEE--------EeCCEEEEEEcCCCCCCCEE
Q psy16852 8 RFIEKI-QPVVSHQEQPALFTCKVEGH--PLPTMTWQKDGTELHATEHYLIT--------TVESVSTLEIINPTKEDIGV 76 (579)
Q Consensus 8 ~~~~~p-~~~~v~~G~~~~l~C~~~~~--~~~~v~W~~~g~~~~~~~~~~~~--------~~~~~~~L~i~~~~~~d~G~ 76 (579)
.+...| .++.+.+|++++|.|.+.+. +.+.+.|++++..+......... .......|.|.+++.+|+|.
T Consensus 225 ~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~ 304 (772)
T 3v2a_R 225 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGL 304 (772)
T ss_dssp EEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSE
T ss_pred eeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeE
Confidence 344444 44789999999999999874 45689999999876543332211 11234789999999999999
Q ss_pred EEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEE
Q psy16852 77 YTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEF 156 (579)
Q Consensus 77 Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 156 (579)
|+|.+.|..+.....+.+.|..+|.... .........+.+|+.+.|.|.+.++|.+.+.|++++..+.......
T Consensus 305 Y~C~~~~~~~~~~~~~~l~V~~~p~~~~---~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~~~~--- 378 (772)
T 3v2a_R 305 YTCAASSGLMTKKNSTFVRVHEKPFVAF---GSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIK--- 378 (772)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCC-------------------------------------------------------
T ss_pred EEEEEEcCCcceeEEEEEEEeCCCeeEe---ccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCceEc---
Confidence 9999999988888888888876432111 1112234567899999999999999999999999988776532211
Q ss_pred cCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEecc---CCceeeCCCCeEEEEE
Q psy16852 157 NPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRP---LQALLVPKDSTVTLEA 233 (579)
Q Consensus 157 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~---~~~~~~~~g~~~~l~C 233 (579)
+...|.|.++..+|+|.|+|.+.|..|....+..+.+.+ ..+|.+... .....+.+|+.+.|.|
T Consensus 379 ----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v---------~~~P~~~~~~~~~~~~~~~~g~~~~l~C 445 (772)
T 3v2a_R 379 ----AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVV---------YVPPQIGEKSLISPVDSYQYGTTQTLTC 445 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----cceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEE---------ecCCcccccccCCCccccCCCCcEEEEe
Confidence 336799999999999999999999888655444444331 234433221 1112377899999999
Q ss_pred EEEccCCCe-EEEEECCEE--------------------------------eccCc--eE----EeCCeEEEEEcccCCC
Q psy16852 234 EYTGTPTPE-VKWFKNGKE--------------------------------IVSKD--IE----TKDNVTKLVIKQTTKK 274 (579)
Q Consensus 234 ~~~~~p~~~-v~W~~~~~~--------------------------------i~~~~--~~----~~~~~~~l~i~~~~~~ 274 (579)
.+.+.|.+. +.|++++.. +.... .. .......|.|.++ +
T Consensus 446 ~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~ 523 (772)
T 3v2a_R 446 TVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--N 523 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec--c
Confidence 999999986 999997322 11100 00 0011246777766 7
Q ss_pred CCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeE
Q psy16852 275 TTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEV 354 (579)
Q Consensus 275 d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~ 354 (579)
|+|.|+|.|.|..|.......+.|.. ++.+.+.... .........+.|.+.|.|.+.+.|++++..+......
T Consensus 524 d~G~Y~C~a~N~~g~~~~~~~l~V~~--~p~i~~~p~~-----~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~ 596 (772)
T 3v2a_R 524 VSALYKCEAVNKVGRGERVISFHVTR--GPEITLQPDM-----QPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVG 596 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCeEEEEEEEccccccceeEEEEEEC--CceeeccCCc-----ccccCCceEEEEeccCCCCCCcEEEEcCCcccccccC
Confidence 89999999999999877666666553 2222222111 1123334455688999999999999998766433221
Q ss_pred EEE-------------------ECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEE--EEEEEEEEecccCCCCCeeecC
Q psy16852 355 TIY-------------------QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAV--AAATLAVEEKEESGEAPKFTKP 413 (579)
Q Consensus 355 ~~~-------------------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~v~~~~~~~~~p~~~~~ 413 (579)
... ......+.|.|.++..+|+|.|+|.|.|..+... ....+.|... .+|.+...
T Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~----~~P~~~~~ 672 (772)
T 3v2a_R 597 ELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLER----VAPTITGN 672 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeeccccc----CCCEeecC
Confidence 110 1222344699999999999999999999665443 2344555322 47888877
Q ss_pred CCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852 414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT 493 (579)
Q Consensus 414 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 493 (579)
+....+.+|+.++|.|.+.|.|.|+|.|+|+|..+..+.++.+.
T Consensus 673 ~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~------------------------------------ 716 (772)
T 3v2a_R 673 LENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK------------------------------------ 716 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCCCCeEEc------------------------------------
Confidence 77788999999999999999999999999999988665433221
Q ss_pred eCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEeeCCcc
Q psy16852 494 DGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEV 538 (579)
Q Consensus 494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~ 538 (579)
...+.|.|.++..+|+|.|+|.|.|..|....++.|.|..+++.
T Consensus 717 -~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~ 760 (772)
T 3v2a_R 717 -DGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK 760 (772)
T ss_dssp ---------------------------------------------
T ss_pred -CCCcEEEECcCCHHHCEEEEEEEEeCCcceeEEEEEEEECCCCc
Confidence 12345999999999999999999999999999999998754433
No 13
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=100.00 E-value=2e-50 Score=429.98 Aligned_cols=515 Identities=15% Similarity=0.185 Sum_probs=121.9
Q ss_pred ccCceeeeCC--CCEEEEEEEEeeCCCeeEEEEC--CEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCee
Q psy16852 12 KIQPVVSHQE--QPALFTCKVEGHPLPTMTWQKD--GTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGV 87 (579)
Q Consensus 12 ~p~~~~v~~G--~~~~l~C~~~~~~~~~v~W~~~--g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~ 87 (579)
.+..+.+.+| +.++|.|.+.+ |.+.+.|+++ +..+......... .....|.|.+++.+|+|.|+|.+.+....
T Consensus 132 ~~~~~~v~~G~~~~v~L~C~~~~-p~~~v~w~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 208 (772)
T 3v2a_R 132 QHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISW--DSKKGFTIPSYMISYAGMVFCEAKINDES 208 (772)
T ss_dssp CEEEEEEESSCCCEEEECCCCSC-SSCCEEEEEETTTEEECCCSSSCEE--ETTTEEEEEGGGTTTCSEEEEEEEETTEE
T ss_pred cceeEEEecCCCCeEEEEccCCC-CCcEEEEEecCCCccccCCCceeec--CCCCCeEecCCChhhCeEEEEEEEECCce
Confidence 4567889999 89999999976 6679999997 6665443321111 12356999999999999999999986554
Q ss_pred eEEE-EEEEEEecccCCCCCcee-cCCCceEEccCCcEEEEEEEEee--cCCeEEEEECCEEccCCCCceEEE------c
Q psy16852 88 ATCS-ANLIVLEKEESGEAPKFT-KPLKPVIAEAQSPATLKATVTGR--PTPSICWYRGKEEILPDNGHTMEF------N 157 (579)
Q Consensus 88 ~~~~-~~~~v~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~--p~~~i~W~~~~~~~~~~~~~~~~~------~ 157 (579)
.... ..+.+... ..+.+. .+.....+.+|+.++|.|.+.+. +.+.+.|++++..+.......... .
T Consensus 209 ~~s~~~~~~v~~~----~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 284 (772)
T 3v2a_R 209 YQSIMYIVVVVGY----RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSE 284 (772)
T ss_dssp EECCEEEEEEECC----CEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CC
T ss_pred EEEEEEEEEEecC----ccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeecccccccccc
Confidence 4333 23333221 122222 23445788999999999999874 457999999988754432221111 1
Q ss_pred CCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEecc---CCceeeCCCCeEEEEEE
Q psy16852 158 PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRP---LQALLVPKDSTVTLEAE 234 (579)
Q Consensus 158 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~---~~~~~~~~g~~~~l~C~ 234 (579)
.......|.|.+++.+|+|.|+|.+.|..+.......+.+. .+|.+... .....+.+|+.+.|.|.
T Consensus 285 ~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~-----------~~p~~~~~~~~~~~~~v~~G~~v~l~C~ 353 (772)
T 3v2a_R 285 MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH-----------EKPFVAFGSGMESLVEATVGERVRIPAK 353 (772)
T ss_dssp CEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEE-----------CCCC------------------------
T ss_pred ceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEe-----------CCCeeEeccCCCCcEEEcCCCcEEEEEE
Confidence 11234689999999999999999999988876666666664 23333222 23455788999999999
Q ss_pred EEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeec
Q psy16852 235 YTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVES 314 (579)
Q Consensus 235 ~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~ 314 (579)
+.+.|.+.+.|+++|..+..... ......|.|.++..+|+|.|+|.|.|..|....+..+.+.+...+.+..... ..
T Consensus 354 ~~~~p~~~v~W~~~g~~l~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~-~~ 430 (772)
T 3v2a_R 354 YLGYPPPEIKWYKNGIPLESNHT--IKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSL-IS 430 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeeeCCCeEEEEECCEeCCCCce--EccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCccccccc-CC
Confidence 99999999999999988865321 1244789999999999999999999998876555555555444333221100 00
Q ss_pred cccCceeeeecCeeEEEeeeCCCe-EEEEECCEE--------------------------------ccCCC-eEEEEEC-
Q psy16852 315 HPTASFQWFIHSEPVVVTGKPTPL-VTWSHDGTP--------------------------------MKEGK-EVTIYQD- 359 (579)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~g~p~~~-i~W~~~~~~--------------------------------~~~~~-~~~~~~~- 359 (579)
............+.|.+.|.|.+. +.|++++.. +.... .......
T Consensus 431 ~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 510 (772)
T 3v2a_R 431 PVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGK 510 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCc
Confidence 001122334455678999999996 999986332 11100 0111011
Q ss_pred CCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeE
Q psy16852 360 TDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSI 439 (579)
Q Consensus 360 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v 439 (579)
....+.|.|.++ +|+|.|+|.|.|..|.....+.|.|.. +|.+...+. ..+.+|+.+.|.|.+.|.|.+.+
T Consensus 511 ~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~------~p~i~~~p~-~~~~~G~~v~l~C~~~~~p~~~v 581 (772)
T 3v2a_R 511 NKTVSTLVIQAA--NVSALYKCEAVNKVGRGERVISFHVTR------GPEITLQPD-MQPTEQESVSLWCTADRSTFENL 581 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEEEeec--ccCeEEEEEEEccccccceeEEEEEEC------CceeeccCC-cccccCCceEEEEeccCCCCCCc
Confidence 112246777776 799999999999999988888888876 454543332 34778999999999999999999
Q ss_pred EEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEe
Q psy16852 440 CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAEN 519 (579)
Q Consensus 440 ~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 519 (579)
.|++++..+.......... +...+.. .|+- .+.............|.|.++..+|+|.|+|.|.|
T Consensus 582 ~W~k~~~~~~~~~~~~~~~--------~~~~~~~-----~~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 646 (772)
T 3v2a_R 582 TWYKLGPQPLPIHVGELPT--------PVCKNLD-----TLWK--LNATMFSNSTNDILIMELKNASLQDQGDYVCLAQD 646 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEcCCcccccccCcccc--------ccccccc-----ceee--ccceeeecCCCceEEEEECCCCccCCcEEEEEEEe
Confidence 9999987765433221110 0000000 0000 00000001112345699999999999999999999
Q ss_pred CCeeEE--EEEEEEEeeCCcccccccCCccccCCCceEEecCCcEEEEEEeccceeecccc
Q psy16852 520 VAGSVT--CTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEIPL 578 (579)
Q Consensus 520 ~~g~~~--~~~~l~v~~~~~~~~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~ 578 (579)
..|... ....|.|. +..+|.+...+.+..+..|++++|.|.+.++|+++|.|
T Consensus 647 ~~~~~~~s~~~~l~v~-------~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W 700 (772)
T 3v2a_R 647 RKTKKRHCVVRQLTVL-------ERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMW 700 (772)
T ss_dssp -------------------------------------------------------------
T ss_pred CCCCeEEEEEEeeccc-------ccCCCEeecCCCceEEeCCCCEEEEEEeCccCCCeEEE
Confidence 766544 34455554 46889998888889999999999999999999999887
No 14
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=100.00 E-value=3.9e-46 Score=361.61 Aligned_cols=369 Identities=25% Similarity=0.389 Sum_probs=270.1
Q ss_pred CCCCccccccCceee---eCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCC-CCCCCEEEEE
Q psy16852 4 VLAPRFIEKIQPVVS---HQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINP-TKEDIGVYTC 79 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v---~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C 79 (579)
..+|.|+..|.+..+ .+|+.+.|.|.+.|.|.|.|+|+|||..+......+....++ .|.|.+. +.+|+|.|+|
T Consensus 3 ~~~P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~g--~l~i~~~~~~~D~G~Y~C 80 (384)
T 3kld_A 3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG--SLLINNPNKTQDAGTYQC 80 (384)
T ss_dssp CEEEEEEECCCCEEEETTCSCSEEEECCEEEEESCCEEEEEETTEECCC----CEEEETT--EEEEESCCHHHHCEEEEE
T ss_pred CCCCEEEeCCcceEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECcCCCCccEEEECC--EEEEcCCCCcccCEEEEE
Confidence 357899999999877 689999999999999999999999999997655444444443 5667665 7899999999
Q ss_pred EEEcCCeeeEE-EEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEE-eecCCeEEEEECCEEccCCCCceEEEc
Q psy16852 80 KATNIGGVATC-SANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFN 157 (579)
Q Consensus 80 ~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~~ 157 (579)
.|.|..|.... ...+.+...+ .........+.+.+|+.+.|.|... +.|.+.+.|++++..+....+... .
T Consensus 81 ~A~N~~G~~~s~~~~l~v~~~~-----~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~--~ 153 (384)
T 3kld_A 81 IATNSFGTIVSREAKLQFAYLE-----NFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFV--S 153 (384)
T ss_dssp EEEETTEEEECCCEEEEEEEEC-----CCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEE--C
T ss_pred EEEcCcccEEecceEEEEeccc-----ccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEE--E
Confidence 99999987543 4555554322 1111223456788999999999763 467789999999988764433222 2
Q ss_pred CCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEE---EEEEEeeccccCCCCccCCCeE-eccCCceeeCCCCeEEEEE
Q psy16852 158 PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECR---ANLVLRKATTIDKPRVLEAPTI-VRPLQALLVPKDSTVTLEA 233 (579)
Q Consensus 158 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~p~~-~~~~~~~~~~~g~~~~l~C 233 (579)
.. .+.|.|.++..+|+|.|+|.+.|..+..... ..+.+..... .....|.+ ...+....+.+|+.+.|.|
T Consensus 154 ~~--~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~----~~~~~p~~~~~~~~~~~~~~G~~v~l~C 227 (384)
T 3kld_A 154 QE--TGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGV----MGEYEPKIEVQFPETVPAEKGTTVKLEC 227 (384)
T ss_dssp TT--TCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEE----CCCEEEEEEEECCSEEEEETTSCEEEEE
T ss_pred cC--CCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCc----ccccCCceeecCCCceEecCCCcEEEEE
Confidence 12 2369999999999999999999987654321 1111111000 00112222 2234456688999999999
Q ss_pred EEEccCCCeEEEEECCE-EeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeee
Q psy16852 234 EYTGTPTPEVKWFKNGK-EIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRV 312 (579)
Q Consensus 234 ~~~~~p~~~v~W~~~~~-~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~ 312 (579)
.+.|.|.+.+.|++++. .+.... ....
T Consensus 228 ~~~g~P~p~i~W~k~~~~~~~~~~-~~~~--------------------------------------------------- 255 (384)
T 3kld_A 228 FALGNPVPTILWRRADGKPIARKA-RRHK--------------------------------------------------- 255 (384)
T ss_dssp EEEEESCCEEEEEETTCCCCCTTC-EECT---------------------------------------------------
T ss_pred EEeecCCCcEEEEeCCCccccccc-eecC---------------------------------------------------
Confidence 99999999999998532 221100 0000
Q ss_pred eccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEE
Q psy16852 313 ESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVA 392 (579)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~ 392 (579)
..+ .|.|.++..+|+|.|+|.|.|..|....
T Consensus 256 -----------------------------------------------~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 286 (384)
T 3kld_A 256 -----------------------------------------------SNG--ILEIPNFQQEDAGSYECVAENSRGKNVA 286 (384)
T ss_dssp -----------------------------------------------TSC--EEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred -----------------------------------------------CCc--EEEECCCChhhCEEEEEEEEcCCCeEEE
Confidence 001 5888888889999999999999888888
Q ss_pred EEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccc
Q psy16852 393 AATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEA 472 (579)
Q Consensus 393 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~ 472 (579)
...|.|.. +|.+...+....+..|+.+.|.|.+.|.|.|.+.|+|+|..+....++.+.
T Consensus 287 ~~~l~v~~------~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~--------------- 345 (384)
T 3kld_A 287 KGQLTFYA------QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE--------------- 345 (384)
T ss_dssp EEEEEEEE------EEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEE---------------
T ss_pred EEEEEEec------CCccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEe---------------
Confidence 88888876 667776677788999999999999999999999999999998765554431
Q ss_pred cCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 473 TPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 473 ~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 346 ------------------------~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~ 382 (384)
T 3kld_A 346 ------------------------QGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382 (384)
T ss_dssp ------------------------TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred ------------------------CCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEe
Confidence 1249999999999999999999999999999999985
No 15
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=100.00 E-value=1.4e-44 Score=351.56 Aligned_cols=369 Identities=24% Similarity=0.302 Sum_probs=275.7
Q ss_pred cCCCCccccccCceee---eCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCC-CCCEEEE
Q psy16852 3 EVLAPRFIEKIQPVVS---HQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTK-EDIGVYT 78 (579)
Q Consensus 3 ~~~~p~~~~~p~~~~v---~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~ 78 (579)
+..+|.|...|.+..+ .+|+.++|.|.+.|.|.+.+.|+|+|..+......+....+ ..|.|.++.. +|+|.|+
T Consensus 1 ~~~~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~--~~L~i~~~~~~~D~G~Y~ 78 (382)
T 1cs6_A 1 RSYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVA--GDLVISNPVKAKDAGSYQ 78 (382)
T ss_dssp CCEEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEET--TEEEEESCCHHHHCEEEE
T ss_pred CCCCCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEeeC--CeEEEecccccccCEEEE
Confidence 3578999999999887 79999999999999999999999999998754322233333 4799999997 9999999
Q ss_pred EEEEcCCeeeEE-EEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEEccCCCCceEEE
Q psy16852 79 CKATNIGGVATC-SANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDNGHTMEF 156 (579)
Q Consensus 79 C~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~ 156 (579)
|.+.|..|.... .+.+.|...+. ..........+.+|+.+.|.|.+ .+.|.+.+.|++++..+..........
T Consensus 79 C~a~n~~g~~~s~~~~l~v~~~~~-----~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 153 (382)
T 1cs6_A 79 CVATNARGTVVSREASLRFGFLQE-----FSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFV 153 (382)
T ss_dssp EEEEETTEEEECCCEEEEEEEECC-----CCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEE
T ss_pred EEEEcCCcEEEecceEEEeecccc-----ccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEE
Confidence 999999886543 46666654321 11123456788899999999995 567889999999987643222222222
Q ss_pred cCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEE-----EEEEEeeccccCCCCccCCCeEec-cCCceeeCCCCeEE
Q psy16852 157 NPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECR-----ANLVLRKATTIDKPRVLEAPTIVR-PLQALLVPKDSTVT 230 (579)
Q Consensus 157 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~ 230 (579)
.. ..+.|.|.+++.+|+|.|+|.+.+..+..... ..+.+... .....+|.+.. .+....+.+|+.+.
T Consensus 154 ~~--~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~-----~~~~~~P~~~~~~~~~~~~~~G~~v~ 226 (382)
T 1cs6_A 154 SQ--TTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAE-----DARQYAPSIKAKFPADTYALTGQMVT 226 (382)
T ss_dssp CT--TTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESC-----CCCCEEEEEEECCCSEEEEETTCCEE
T ss_pred ec--CceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchh-----hcccCCCceeccCCCceEEeCCCeEE
Confidence 22 22469999999999999999999876433222 12222210 01112344433 24466788999999
Q ss_pred EEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeee
Q psy16852 231 LEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDV 310 (579)
Q Consensus 231 l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~ 310 (579)
|.|.+.+.|.+.+.|++++..+... .
T Consensus 227 l~C~~~g~p~~~i~W~~~~~~~~~~-------------------------------~----------------------- 252 (382)
T 1cs6_A 227 LECFAFGNPVPQIKWRKLDGSQTSK-------------------------------W----------------------- 252 (382)
T ss_dssp EECEEEEESCCEEEEEECCSCCSCC-------------------------------C-----------------------
T ss_pred EEEEEccCCCCEEEEEECCcccccE-------------------------------E-----------------------
Confidence 9999999999999999876432100 0
Q ss_pred eeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeE
Q psy16852 311 RVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEA 390 (579)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 390 (579)
. .....|.|.++..+|+|.|+|.|.|..|..
T Consensus 253 --~-----------------------------------------------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 283 (382)
T 1cs6_A 253 --L-----------------------------------------------SSEPLLHIQNVDFEDEGTYECEAENIKGRD 283 (382)
T ss_dssp --S-----------------------------------------------BSSSEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred --e-----------------------------------------------cCCcEEEEccCChhhCEEEEEEEEcCCCeE
Confidence 0 000058888888899999999999999988
Q ss_pred EEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEc
Q psy16852 391 VAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSIS 470 (579)
Q Consensus 391 ~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~ 470 (579)
...+.|.|.. +|.+...+....+..|+.++|.|.+.|.|.|.+.|+++|..+....++.+.
T Consensus 284 ~~~~~l~V~~------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~------------- 344 (382)
T 1cs6_A 284 TYQGRIIIHA------QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS------------- 344 (382)
T ss_dssp EEEEEEEEEE------EEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE-------------
T ss_pred EEEEEEEEec------CCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEE-------------
Confidence 8888888876 667776677788999999999999999999999999999998766544331
Q ss_pred cccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 471 EATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 471 ~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.+.|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus 345 --------------------------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 381 (382)
T 1cs6_A 345 --------------------------GGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381 (382)
T ss_dssp --------------------------TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred --------------------------CCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence 1249999999999999999999999999999999985
No 16
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=100.00 E-value=1.3e-43 Score=347.57 Aligned_cols=370 Identities=19% Similarity=0.248 Sum_probs=276.6
Q ss_pred CCceecCCCceEEccCCcEEEEEEEEe-ecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcC-----CCCCCeEE
Q psy16852 105 APKFTKPLKPVIAEAQSPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEA-----TPQDEAVY 178 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~G~Y 178 (579)
...+...+....+.+|+.++|.|.+.+ .|.+.+.|++++..+............. +.|.|.++ +.+|+|.|
T Consensus 21 ~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~---~~l~i~~~~~~~~~~~D~G~Y 97 (403)
T 3laf_A 21 SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPN---GSLLIQNILHSRHHKPDEGLY 97 (403)
T ss_dssp SSEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEECTT---SCEEECSCCCBTTBCSSCEEE
T ss_pred eEEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEEecC---CcEEEeeeeccCCCCCcceEE
Confidence 445666788889999999999999976 5778999999999887654444443322 24777776 67799999
Q ss_pred EEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccC---
Q psy16852 179 SVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSK--- 255 (579)
Q Consensus 179 ~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~--- 255 (579)
+|.+.+..+....+..+.+. +..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...
T Consensus 98 ~C~~~~~~~~~~~s~~~~l~---------v~~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~ 168 (403)
T 3laf_A 98 QCEASLGDSGSIISRTAKVM---------VAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGD 168 (403)
T ss_dssp EEEEECGGGCEEECCCEEEE---------ECCCCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTC
T ss_pred EEEEEeCCCccEEEEEEEEE---------ecCCCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCc
Confidence 99999765444333223332 124666666677778999999999999999999999999999877432
Q ss_pred ceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeE-EEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeee
Q psy16852 256 DIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEAR-TSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGK 334 (579)
Q Consensus 256 ~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~ 334 (579)
..........|.|.++..+|+|.|+|.|.|..+... ....+.|...+.....+..................+.|.+.|.
T Consensus 169 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 248 (403)
T 3laf_A 169 SRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGY 248 (403)
T ss_dssp CSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEE
T ss_pred eEEEEcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCC
Confidence 222333345799999999999999999999876532 3455555543332211111111111111122334456889999
Q ss_pred CCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCC
Q psy16852 335 PTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPL 414 (579)
Q Consensus 335 p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~ 414 (579)
|.+.+.|++++..+............. .|.|.++..+|+|.|+|.|.|..|....++.|.|.. +|.+...+
T Consensus 249 p~~~~~W~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~------~p~~~~~~ 319 (403)
T 3laf_A 249 PPPSFTWLRGEEVIQLRSKKYSLLGGS---NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV------PPWFLNHP 319 (403)
T ss_dssp SCCEEEEEETTEECCCSSSSEEEETTT---EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE------EEEEEECC
T ss_pred CCCeEEEEECCeeccCCCceEEECCcc---EEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEEC------CCcEeecC
Confidence 999999999999887654333333222 799999999999999999999999999999999986 67777777
Q ss_pred CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852 415 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD 494 (579)
Q Consensus 415 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 494 (579)
....+.+|+.++|.|.+.|.|.|.+.|+++|..+..+.++.+.
T Consensus 320 ~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~------------------------------------- 362 (403)
T 3laf_A 320 SNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIV------------------------------------- 362 (403)
T ss_dssp CCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEE-------------------------------------
T ss_pred cceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEe-------------------------------------
Confidence 7788999999999999999999999999999998766554431
Q ss_pred CCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
..+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 363 -~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 400 (403)
T 3laf_A 363 -GGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP 400 (403)
T ss_dssp -TTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECC
T ss_pred -cCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEe
Confidence 12349999999999999999999999999999999975
No 17
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=100.00 E-value=4.4e-44 Score=348.91 Aligned_cols=390 Identities=13% Similarity=0.090 Sum_probs=230.5
Q ss_pred CCCCEEEEEEEEcCCeee-EEEEEEEE---Eec------ccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEE
Q psy16852 71 KEDIGVYTCKATNIGGVA-TCSANLIV---LEK------EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWY 140 (579)
Q Consensus 71 ~~d~G~Y~C~~~~~~g~~-~~~~~~~v---~~~------~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~ 140 (579)
-.|.|.|+|...+..+.. +...+... ... ...+..+.+...+.++.+.+|+.+.|.|.+.+.|.+.|.|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~c~~~p~~~~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~ 83 (423)
T 3qs7_E 4 NQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWV 83 (423)
T ss_dssp ----------------------------------------------------CEEEECSSCCEEEEEECSCCSSCEEEEE
T ss_pred cCCCCeeEEEEEeccCCCccccccccchhhhCCHHHcCCccCCCCCcceeccccEEEecCCcEEEEEEEEcCCCCeEEEE
Confidence 468999999987653322 22212111 000 00011122333445788999999999999999999999999
Q ss_pred ECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCc
Q psy16852 141 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQA 220 (579)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~ 220 (579)
+++..+........ ......+|.|.+++.+|+|.|+|.|.|..|.......+.|. .+|.+. +...
T Consensus 84 ~~~~~l~~~~~~~~---~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~-----------~~p~~~-~~~p 148 (423)
T 3qs7_E 84 FKHSSLNCQPHFDL---QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIR-----------NTLLYT-LRRP 148 (423)
T ss_dssp ETTEEECCCCBC--------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC----------------C-EEEE
T ss_pred ECCCccCccceecc---ccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEe-----------cCcccc-ccCC
Confidence 99987654322111 11234579999999999999999999998887766666664 222221 1111
Q ss_pred eeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEE-cccCCCCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 221 LLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVI-KQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299 (579)
Q Consensus 221 ~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i-~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~ 299 (579)
.....|+.+.|.|.+.|.|.|.+.|++++..+.......... .... .-+...|+|.|+|.|.|..|.... ..+.|.
T Consensus 149 ~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~--~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~-~~~~l~ 225 (423)
T 3qs7_E 149 YFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAV--VKKEEKVLHELFGTDIRCCARNELGRECT-RLFTID 225 (423)
T ss_dssp EEEECSSSSCEEEEEEESSCCEEEEEEC-------------C--EEECCSEECCCCSSCEEEEEECSSCEEEE-ECEEEE
T ss_pred cEeccCCceEEEEEEeeecCCeEEEEECCCCCcccccccccc--ccccceEEecccCeEEEEEEEcCCCCcce-eeEEEE
Confidence 234457788999999999999999999887653211000000 0111 111578999999999999987654 334444
Q ss_pred eccceeeee-eeeeeccccCceeeeecCeeEEEee-eCCCeEEEEECCEEccCCCeEEEE--ECC---CCeEEEEEcccC
Q psy16852 300 VAEAETVMM-DVRVESHPTASFQWFIHSEPVVVTG-KPTPLVTWSHDGTPMKEGKEVTIY--QDT---DGLCKLAISEVF 372 (579)
Q Consensus 300 ~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~g-~p~~~i~W~~~~~~~~~~~~~~~~--~~~---~~~~~l~i~~~~ 372 (579)
+...+.... ...+. .+....+.|.+.| .|.+.++|++++..+.....+... ... .....|.|.++.
T Consensus 226 V~~~p~~~~~~~~v~-------~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~ 298 (423)
T 3qs7_E 226 LNQTPQTTLPQLFLK-------VGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVA 298 (423)
T ss_dssp SSSCCCSSTTEEEEE-------TTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCC
T ss_pred EecCCccCCCceEEe-------CCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecC
Confidence 443322111 01111 1222334588888 677999999999987655333111 111 112479999999
Q ss_pred CCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCC--CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCC
Q psy16852 373 PENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPL--KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILP 450 (579)
Q Consensus 373 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~ 450 (579)
.+|+|.|+|.|.|. ...++.|.|.. +|.+...+ ....+.+|+.+.|.|.+.|+|.|.|.|+|+|..|..
T Consensus 299 ~~D~G~Y~C~A~N~---~~~~~~L~V~~------~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~ 369 (423)
T 3qs7_E 299 RNDTGYYTCSSSKH---PSQSALVTIVE------KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPC 369 (423)
T ss_dssp TTTCEEEEEEETTE---EEEEEEEEEES------SCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEEC
T ss_pred HHHCEEEEEEEecC---CCceEEEEEEe------CCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCC
Confidence 99999999999997 66777888876 44444322 346788999999999999999999999999998865
Q ss_pred CCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEE
Q psy16852 451 DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATL 530 (579)
Q Consensus 451 ~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 530 (579)
..+.. .+ ...+.+.....+|+|.|+|.|.|..|....++.|
T Consensus 370 ~~~~~-----~~----------------------------------~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L 410 (423)
T 3qs7_E 370 EQKGL-----DN----------------------------------GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTL 410 (423)
T ss_dssp BCCBC-----SS----------------------------------SSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEE
T ss_pred ccccc-----cC----------------------------------CcEEEEEecccccCEEEEEEEEcCCceEEEEEEE
Confidence 43100 00 0001124455679999999999999999999999
Q ss_pred EEe
Q psy16852 531 SLL 533 (579)
Q Consensus 531 ~v~ 533 (579)
.|.
T Consensus 411 ~v~ 413 (423)
T 3qs7_E 411 NIR 413 (423)
T ss_dssp C--
T ss_pred EEe
Confidence 986
No 18
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=1.3e-43 Score=346.57 Aligned_cols=378 Identities=20% Similarity=0.312 Sum_probs=273.9
Q ss_pred CcCCCCccccccCceeeeCCCCEEEEEEEEe-eCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy16852 2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCK 80 (579)
Q Consensus 2 ~~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~-~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 80 (579)
+...||.|...|.++.+.+|+.++|.|.+.+ .|.+.++|+|+|..+..... .........+|.|.+++.+|+|.|+|.
T Consensus 2 ~v~~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (395)
T 1bih_A 2 PVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEH-NAALRKDEGSLVFLRPQASDEGHYQCF 80 (395)
T ss_dssp ---CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTT-TEEECTTSCCEEESSCCGGGCEEEEEE
T ss_pred CcCCCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccc-eEEEecCCceEEEecCCCCCCcEEEEE
Confidence 4557999999999999999999999999998 78889999999999876653 223334456899999999999999999
Q ss_pred EEcCCeeeEE-EEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCE--E-ccCC--CCce
Q psy16852 81 ATNIGGVATC-SANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKE--E-ILPD--NGHT 153 (579)
Q Consensus 81 ~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~--~-~~~~--~~~~ 153 (579)
+.|..|.... .+.+.|...+. |.+ .+....+.+|+.+.|.|.+ .+.|.+.+.|++++. . .... ....
T Consensus 81 a~n~~g~~~s~~~~l~v~~~~~----p~~--~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~ 154 (395)
T 1bih_A 81 AETPAGVASSRVISFRKTYLIA----SPA--KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRR 154 (395)
T ss_dssp EEETTEEEECCCEEEEEEEEEC----CCC--EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTT
T ss_pred EEeCCCeEEeEEEEEEEEEeec----CCc--CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCccccccccccc
Confidence 9998886653 35555544321 222 1235567799999999996 889999999999752 1 1111 0222
Q ss_pred EEEcCCCCeEEEEECcCCCCCCe---EEEEEEEcCCceeEEEEEEEEee-ccc-cCCCCccCCCeEeccCCceeeCCCCe
Q psy16852 154 MEFNPTTGECVLSISEATPQDEA---VYSVKAVNTFGRAECRANLVLRK-ATT-IDKPRVLEAPTIVRPLQALLVPKDST 228 (579)
Q Consensus 154 ~~~~~~~~~~~l~i~~~~~~d~G---~Y~C~~~~~~~~~~~~~~~~v~~-~~~-~~~~~~~~~p~~~~~~~~~~~~~g~~ 228 (579)
+..... +.|.|.++..+|+| .|+|.+.|..+............ ... ........+|.+ .+....+.+|+.
T Consensus 155 ~~~~~~---~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~ 229 (395)
T 1bih_A 155 ITAGPD---GNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAGDV 229 (395)
T ss_dssp EEECTT---SCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETTSC
T ss_pred EEEcCC---CcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCceEEECCCc
Confidence 332222 26999999999999 99999999988754433222211 110 000011122333 245567889999
Q ss_pred EEEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeee
Q psy16852 229 VTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMM 308 (579)
Q Consensus 229 ~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l 308 (579)
+.|.|.+.+.|.+.+.|+++|..+.... ...+ ..
T Consensus 230 v~l~C~~~g~p~~~i~W~~~g~~~~~~~-------------------~~~~---------------------------~~ 263 (395)
T 1bih_A 230 TMIYCMYGSNPMGYPNYFKNGKDVNGNP-------------------EDRI---------------------------TR 263 (395)
T ss_dssp EEEEEEEECSSCCCCEEEETTEECCCCT-------------------TSSE---------------------------ES
T ss_pred EEEEEEeccCCCCeEEEEECCEEcCCCC-------------------ceeE---------------------------EE
Confidence 9999999999999999999987653211 0000 00
Q ss_pred eeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCce
Q psy16852 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388 (579)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 388 (579)
. . ......|.|.++..+|+|.|+|.|.|..|
T Consensus 264 --~--------------------------------~---------------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 294 (395)
T 1bih_A 264 --H--------------------------------N---------------RTSGKRLLFKTTLPEDEGVYTCEVDNGVG 294 (395)
T ss_dssp --C--------------------------------S---------------SSTTSEEEESSCCGGGCEEEEEEECCSSS
T ss_pred --E--------------------------------e---------------cCCCceEEEccCChhhCEEEEEEEEeCCC
Confidence 0 0 00001688999999999999999999988
Q ss_pred eEEE-EEEEEEEecccCCCCCeeecCCCc-eeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEE
Q psy16852 389 EAVA-AATLAVEEKEESGEAPKFTKPLKP-VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466 (579)
Q Consensus 389 ~~~~-~~~l~v~~~~~~~~~p~~~~~~~~-~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~ 466 (579)
.... ++.|.|.. +|.+...+.. ..+.+|+.++|.|.+.|.|.|.+.|+++|..+..+ ++.+.
T Consensus 295 ~~~~~~~~l~V~~------~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~--------- 358 (395)
T 1bih_A 295 KPQKHSLKLTVVS------APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVT--------- 358 (395)
T ss_dssp SCEEEEEEEEEEE------EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEE---------
T ss_pred CceEEEEEEEEEc------CCccccCCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCC-ceEEE---------
Confidence 7655 78888886 6777766655 78899999999999999999999999999988543 22221
Q ss_pred EEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 467 l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
.+.|+|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 359 ------------------------------~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 394 (395)
T 1bih_A 359 ------------------------------DSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394 (395)
T ss_dssp ------------------------------TTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred ------------------------------CCEEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence 114999999999999999999999999999999886
No 19
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=100.00 E-value=5.5e-44 Score=350.47 Aligned_cols=374 Identities=22% Similarity=0.362 Sum_probs=271.4
Q ss_pred CCCCccccc-cCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEc----CCCCCCCEEEE
Q psy16852 4 VLAPRFIEK-IQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEII----NPTKEDIGVYT 78 (579)
Q Consensus 4 ~~~p~~~~~-p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~----~~~~~d~G~Y~ 78 (579)
..||.|... +.++.+.+|+.++|.|.+.|.|.+.+.|+|+|..+......+.........|.|. +++.+|+|.|+
T Consensus 14 ~~~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~Y~ 93 (404)
T 3p3y_A 14 TQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQ 93 (404)
T ss_dssp CCCCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEEEE
T ss_pred cCCCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEEEE
Confidence 468888864 7778999999999999999999999999999998754322222222234556664 88899999999
Q ss_pred EEEEcCCeeeE-EEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEEccCCCCceEEE
Q psy16852 79 CKATNIGGVAT-CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDNGHTMEF 156 (579)
Q Consensus 79 C~~~~~~g~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~ 156 (579)
|.+.|..|... ..+.+.|...+ ........+..+.+|+.+.|.|.+ .+.|.+.+.|++++........ ....
T Consensus 94 C~a~n~~g~~~s~~~~l~V~~~p-----~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~-~~~~ 167 (404)
T 3p3y_A 94 CFARNKFGTALSNRIRLQVSKSP-----LWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDK-RVSQ 167 (404)
T ss_dssp EEEECSSCEEEEEEEEEEECCCC-----CCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCS-SEEE
T ss_pred EEEEcCCCeEeeeeEEEEEeccC-----ccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCC-cEEE
Confidence 99999888764 56677776432 122223455788899999999998 7888899999998755443322 2222
Q ss_pred cCCCCeEEEEECcCCCCC-CeEEEEEEEcCCceeEEE---EEEEEeeccccCCCCccCCCeEeccC---CceeeCCCCeE
Q psy16852 157 NPTTGECVLSISEATPQD-EAVYSVKAVNTFGRAECR---ANLVLRKATTIDKPRVLEAPTIVRPL---QALLVPKDSTV 229 (579)
Q Consensus 157 ~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~p~~~~~~---~~~~~~~g~~~ 229 (579)
.. .+.|.|.++..+| +|.|+|.+.|..+..... ..+.+.... .....+|.+..+. ....+.+|+.+
T Consensus 168 ~~---~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~----~~~~~~p~~~~~~~~~~~~~~~~G~~v 240 (404)
T 3p3y_A 168 GH---NGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTR----GVAERTPSFMYPQGTASSQMVLRGMDL 240 (404)
T ss_dssp CT---TSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCS----CCCCCCCCBSSSCSSEEEEEEETTSCE
T ss_pred cC---CCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccC----CccccCCccccccCCCCCceEecCCCE
Confidence 21 2359999999999 599999999987754322 222222111 0111233333322 23458899999
Q ss_pred EEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeee
Q psy16852 230 TLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMD 309 (579)
Q Consensus 230 ~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~ 309 (579)
.|.|.+.+.|.+.+.|+++|..+............
T Consensus 241 ~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~--------------------------------------------- 275 (404)
T 3p3y_A 241 LLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNK--------------------------------------------- 275 (404)
T ss_dssp EEECCBCCSSCCEEEEEETTBCCCTTTEEEEGGGT---------------------------------------------
T ss_pred EEEEEECCCCCCcEEEEECCEECCCCcccccccCc---------------------------------------------
Confidence 99999999999999999999876433211100011
Q ss_pred eeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCcee
Q psy16852 310 VRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389 (579)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 389 (579)
.|.|.++..+|+|.|+|.|.|..|.
T Consensus 276 -------------------------------------------------------~L~i~~~~~~d~G~Y~C~a~n~~g~ 300 (404)
T 3p3y_A 276 -------------------------------------------------------ALRITNVSEEDSGEYFCLASNKMGS 300 (404)
T ss_dssp -------------------------------------------------------EEEESSCCGGGCEEEEEEEECSSCE
T ss_pred -------------------------------------------------------eEEEccCCHhHCEEEEEEEEeCCCc
Confidence 4677777778888888888888887
Q ss_pred EEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCe-eEEEcCCCCeEEEE
Q psy16852 390 AVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGH-TMEFNPTTGECVLS 468 (579)
Q Consensus 390 ~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~-~~~~~~~~~~~~l~ 468 (579)
....+.|.|.. +|.+...+....+.+|+.++|.|.+.|.|.|.+.|+++|..+...... ....
T Consensus 301 ~~~~~~l~V~~------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~---------- 364 (404)
T 3p3y_A 301 IRHTISVRVKA------APYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREV---------- 364 (404)
T ss_dssp EEEEEEEEEEE------EEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEE----------
T ss_pred EEEEEEEEEeC------CCeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEe----------
Confidence 77777777775 566666677778899999999999999999999999999998654321 1100
Q ss_pred EccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 469 ISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 469 i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
..+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 365 ---------------------------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 402 (404)
T 3p3y_A 365 ---------------------------AGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 402 (404)
T ss_dssp ---------------------------ETTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC
T ss_pred ---------------------------cCCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEE
Confidence 12359999999999999999999999999999999875
No 20
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=100.00 E-value=7.2e-43 Score=349.34 Aligned_cols=376 Identities=13% Similarity=0.097 Sum_probs=253.0
Q ss_pred ceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEE
Q psy16852 114 PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRA 193 (579)
Q Consensus 114 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 193 (579)
++.+.+|+.++|.|.+.+.|...+.|++++..+....... .+ ..+..+|.|.+++.+|+|.|+|.+.|..+......
T Consensus 57 ~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~--~~-~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~~ 133 (527)
T 3qs9_E 57 AVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFD--LQ-NRGVVSMVILKMTETQAGEYLLFIQSEATNYTILF 133 (527)
T ss_dssp EEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC--------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEE
T ss_pred eEEEeccccEEEEEEEecCCceeEEEEecCCccCcccccC--CC-cceEEEEEECcCChhhCeeEEEEEEeccccEEEEE
Confidence 6789999999999999887889999999988765433332 11 12446799999999999999999999887665555
Q ss_pred EEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCC
Q psy16852 194 NLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTK 273 (579)
Q Consensus 194 ~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~ 273 (579)
.+.+.. ..+...........++.+.|.|.+.|.|.|.+.|++++..+.... .............+..
T Consensus 134 ~v~v~~------------~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 200 (527)
T 3qs9_E 134 TVSIRN------------TLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCK-EESPAVVKKEEKVLHE 200 (527)
T ss_dssp EEEEC-----------------CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC--------------CEEECCSEECC
T ss_pred EEEECC------------ceeeccCCCcEEecCCceEEEEEEceecCCeEEEEECCCCCcccc-ccCCcEEEEeeeeccc
Confidence 544420 011111112223457777899999999999999999887654221 0111111222334557
Q ss_pred CCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeee-eeeeeccccCceeeeecCeeEEEe-eeCCCeEEEEECCEEccCC
Q psy16852 274 KTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMM-DVRVESHPTASFQWFIHSEPVVVT-GKPTPLVTWSHDGTPMKEG 351 (579)
Q Consensus 274 ~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~-g~p~~~i~W~~~~~~~~~~ 351 (579)
.|+|.|+|.|.|..|..... .+.+.+...+.... ...+.. .....+.|.+. |.|.+.++|++++..+...
T Consensus 201 ~d~G~Y~C~A~N~~G~~~~~-~~~l~V~~~p~~~p~~~~v~~-------G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~ 272 (527)
T 3qs9_E 201 LFGTDIRCCARNELGRECTR-LFTIDLNQTPQTTLPQLFLKV-------GEPLWIRCKAVHVNHGFGLTWELENKALEEG 272 (527)
T ss_dssp CCSSCEEEEEECSSCEEEEE-CEEEESSSCCCCSCCEEEECT-------TSCEEEEEEEEESSSCCCEEEECSSSCCCGG
T ss_pred cCCEEEEEEEEeCCCcccce-EEEEEEeccCccCCCceEEeC-------CCeEEEEEEEccCCCCeEEEEEECCEECCCC
Confidence 89999999999999876553 23444433222110 111111 12233458886 8999999999999988765
Q ss_pred CeEEEEE--CC---CCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCC--CceeeecCCC
Q psy16852 352 KEVTIYQ--DT---DGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPL--KPVIAEAQSP 424 (579)
Q Consensus 352 ~~~~~~~--~~---~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~--~~~~~~~g~~ 424 (579)
..+.... .. .....|.|.++..+|+|.|+|.|.|. ...++.|.|.. +|.+...+ ....+.+|+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~------~p~i~~~~~~~~~~v~~G~~ 343 (527)
T 3qs9_E 273 NYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVE------KGFINATNSSEDYEIDQYEE 343 (527)
T ss_dssp GEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC--------CEEECCCSCCEECCCTTCC
T ss_pred ceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEc------cCccccccCcccEEEcCCCe
Confidence 4432211 11 12246999999999999999999997 56677777765 44443322 3467889999
Q ss_pred eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852 425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK 504 (579)
Q Consensus 425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~ 504 (579)
+.|.|.+.|.|.|.+.|+|+|..+....++. .....|.|.+
T Consensus 344 v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~---------------------------------------~~~~~L~I~~ 384 (527)
T 3qs9_E 344 FCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL---------------------------------------DNGYSISKFC 384 (527)
T ss_dssp CCEEEEEEEESCCEEEEEETTEEEECBCCBC---------------------------------------SSSSEEEEEC
T ss_pred EEEEEEEEecCCCEEEEEECCEECcCCcccc---------------------------------------cCCcEEEEec
Confidence 9999999999999999999999885543211 0223488999
Q ss_pred cccccceeEEEEEEeCCeeEEEEEEEEEeeCCcccccccCCccccCCCceEEecCCcEEEEEEeccceeecccc
Q psy16852 505 ITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEIPL 578 (579)
Q Consensus 505 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~ 578 (579)
+..+|+|.|+|.|.|..|....++.|.| ..+|.+...+. | .+|.|.|.++|++.|.|
T Consensus 385 v~~~D~G~YtC~A~N~~g~~~~~~~L~V---------~~~P~i~~~~~------~--~~l~C~a~g~P~p~i~W 441 (527)
T 3qs9_E 385 NHKHQPGEYIFHAENDDAQFTKMFTLNI---------RRKPQVLAEAS------A--SQASCFSDGYPLPSWTW 441 (527)
T ss_dssp CCTTCCSCEEEEEEETTEEEEEEEEEC-----------CCCEEEECCC------C--E---EEEECSSCCEEEE
T ss_pred CCcccCEEEEEEEEeCCCcEEEEEEEEE---------ecCCeEEEeCC------C--CEEEEEEEEEcCCeEEE
Confidence 9999999999999999999998888886 47788766543 2 35799999999999887
No 21
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=100.00 E-value=1.4e-42 Score=351.70 Aligned_cols=413 Identities=15% Similarity=0.144 Sum_probs=274.5
Q ss_pred CCceEEccCCcEEEEEEEEeecCCeEEEEECCE--Ec---c-------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEE
Q psy16852 112 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKE--EI---L-------PDNGHTMEFNPTTGECVLSISEATPQDEAVYS 179 (579)
Q Consensus 112 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~---~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 179 (579)
+..+.+.+|+.+.|.|.+.+.|.+.+.||+++. .+ . .....++......+...|.|.+++.+|+|.|+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 86 (523)
T 2rcj_C 7 PPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESDYY 86 (523)
T ss_pred CCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCEEEE
Confidence 456788899999999999988889999999742 11 0 01112333334455678999999999999999
Q ss_pred EEEEcCCcee---EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCC--eEEEEECCEEecc
Q psy16852 180 VKAVNTFGRA---ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP--EVKWFKNGKEIVS 254 (579)
Q Consensus 180 C~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~i~~ 254 (579)
|.+.|..|.. .....+.|... ...+|.+...+....+.+|+.+.|.|.+.+.|++ .+.|+++|..+..
T Consensus 87 C~a~n~~g~~~~~~~~~~l~V~~~-------~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~ 159 (523)
T 2rcj_C 87 CASWNSSDNSYVFGTGTKVTVLGQ-------PKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKA 159 (523)
T ss_pred EEEccCCCccccccCceEEEeccC-------CCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCC
Confidence 9999976532 12334444211 1245555555555556789999999999987654 9999999988765
Q ss_pred CceEE-----eC----CeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEe--ccceeeeeeeeeeccccCceeee
Q psy16852 255 KDIET-----KD----NVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV--AEAETVMMDVRVESHPTASFQWF 323 (579)
Q Consensus 255 ~~~~~-----~~----~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~--~~~~~~~l~~~~~~~~~~~~~~~ 323 (579)
..... .. ..+.|.|.++..+|+|.|+|.|.|..+.......+.+.. ...+.+.. ...........
T Consensus 160 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~----~~~~~~~~~G~ 235 (523)
T 2rcj_C 160 GVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFP----LAPSSKSTSGG 235 (523)
T ss_pred ceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEe----cCCCcccccCC
Confidence 43111 01 124699999999999999999999887655444432211 11122211 00011112334
Q ss_pred ecCeeEEEeee-CCC-eEEEEECCEEccCCCeEEEEECCCC----eEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEE
Q psy16852 324 IHSEPVVVTGK-PTP-LVTWSHDGTPMKEGKEVTIYQDTDG----LCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLA 397 (579)
Q Consensus 324 ~~~~~~~~~g~-p~~-~i~W~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 397 (579)
...+.|.+.|. |.+ .++|++++..+........ ...++ .+.|.|.++..+| |.|+|.|.|..|.......+.
T Consensus 236 ~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~-~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~ 313 (523)
T 2rcj_C 236 TAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVE 313 (523)
T ss_pred ceEEEEEEeceeCCCeEEEEecCCcccceEeCCcE-ecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecC
Confidence 45567888886 877 8999999987543211111 11222 3589999999999 999999999999877666666
Q ss_pred EEecccCCCCCee-ecCCCcee-eecCCCeEEEEEEEeeCC----CeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEcc
Q psy16852 398 VEEKEESGEAPKF-TKPLKPVI-AEAQSPATLKATVTGRPT----PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISE 471 (579)
Q Consensus 398 v~~~~~~~~~p~~-~~~~~~~~-~~~g~~~~l~C~~~g~p~----~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~ 471 (579)
+.. .|.+ ..++.... +.+|+.++|.|.+.|.|+ ++|.|+|+|..+.........
T Consensus 314 v~~------~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~-------------- 373 (523)
T 2rcj_C 314 PLS------LPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPRE-------------- 373 (523)
T ss_pred CCc------CceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCce--------------
Confidence 543 3433 43443333 788999999999998754 499999999988654322110
Q ss_pred ccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEeeCCcccccccCCccccCC
Q psy16852 472 ATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTP 551 (579)
Q Consensus 472 ~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~v~~~p~~~~~~ 551 (579)
..+.|.|.. .+.|.|.++..+|+|.|+|.|.|..|.......+.+. ..+..+|.+...+
T Consensus 374 --~~~~g~~~~--------------~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~-----~~~~~~P~v~~~~ 432 (523)
T 2rcj_C 374 --QQYNSTYRV--------------VSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKA-----KGQPREPQVYTLP 432 (523)
T ss_pred --ecCCCcEEE--------------EEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEEcc-----cCCCCCCEEEEeC
Confidence 122233321 2459999999999999999999998877665555531 1245778776554
Q ss_pred CceEEecCCcEEEEEEeccceee--cccc
Q psy16852 552 ETAKVMDGQSVLFTAQVGYSERL--EIPL 578 (579)
Q Consensus 552 ~~~~~~~g~~~~l~C~~~~~~~~--~~~~ 578 (579)
.......|+.++|.|.|.+.|++ .|.|
T Consensus 433 ~~~~~~~~~~~~l~C~~~g~~p~~~~v~W 461 (523)
T 2rcj_C 433 PSREEMTKNQVSLTCLVKGFYPSDIAVEW 461 (523)
T ss_pred CChHHccCCceEEEEEEEeeECCCCEEEE
Confidence 43333345559999999887765 5655
No 22
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=100.00 E-value=3.2e-44 Score=363.84 Aligned_cols=406 Identities=13% Similarity=0.114 Sum_probs=280.9
Q ss_pred CeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEE
Q psy16852 85 GGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 164 (579)
Q Consensus 85 ~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (579)
.|.....+.+.|. .+|.+........+.+|+.++|.|.+.+ .+.|++++..+. .. .....
T Consensus 22 ~g~~~~~i~l~v~------~pP~i~~~~~~~~v~~G~~v~l~C~~~~----~v~W~~~~~~~~------~~----~~~~~ 81 (524)
T 2ec8_A 22 TGSSQPSVSPGEP------SPPSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDET------NE----NKQNE 81 (524)
T ss_dssp -----------CC------CCCEEESCCSEEECCTTSCEEEEEECTT----EEEEEEESSSCC------EE----ECSSE
T ss_pred cCCCCCeEEcCCC------CCCccCCCCceEEEeCCCeEEEEEeCCc----eEEEcCCCcccc------cc----Cccce
Confidence 3444445556664 4667776667788999999999999875 999999988651 11 12357
Q ss_pred EEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEE
Q psy16852 165 LSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVK 244 (579)
Q Consensus 165 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~ 244 (579)
|.|.+++.+|+|.|+|.+.| |. .....+.|. .+|.+...+....+.+|+.+.|.|.+.+.+.+.+.
T Consensus 82 L~I~~~~~~D~G~Y~C~a~n--g~-~~~~~l~V~-----------~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~v~ 147 (524)
T 2ec8_A 82 WITEKAEATNTGKYTCTNKH--GL-SNSIYVFVR-----------DPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYS 147 (524)
T ss_dssp EEESSCCSTTCEEEEEEETT--SC-EEEEEEECC-----------CSSCSBCCCCCCCEETTSCEEECCCBSCCCCSCEE
T ss_pred EEEcccchhhCEEEEEeecC--Cc-ceEEEEEEC-----------CCCcccccccceEEEcCCeEEEECcCCCCccceEE
Confidence 99999999999999999998 42 444444443 23333344556678899999999999887768999
Q ss_pred EEE-CCEEeccCceEEeCCeEEEEEcccCCCCCe-EEEEEEEcCCeeeEE-EEEEEEEec--cceeeeeeeeeeccccCc
Q psy16852 245 WFK-NGKEIVSKDIETKDNVTKLVIKQTTKKTTG-KYEIRVVNEAGEART-SGSVTITVA--EAETVMMDVRVESHPTAS 319 (579)
Q Consensus 245 W~~-~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~a~n~~g~~~~-~~~~~v~~~--~~~~~~l~~~~~~~~~~~ 319 (579)
|++ +|..+.............|.|.++..+|+| .|+|.|.|..+.... .+.+.|... ..+.+..... ....
T Consensus 148 W~~~~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~----~~~v 223 (524)
T 2ec8_A 148 LKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKA----SYLL 223 (524)
T ss_dssp EECSSSCCCCSSCEEEEETTTEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCS----EEEE
T ss_pred EEccCCcCcCCCCceeECCCccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCC----cceE
Confidence 998 888776554332333447999999999999 999999987665432 445555411 2222221110 0011
Q ss_pred eeeeecCeeEEEeeeCCCe-EEEEECCEEc--cCCCeEEEEE--CCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEE
Q psy16852 320 FQWFIHSEPVVVTGKPTPL-VTWSHDGTPM--KEGKEVTIYQ--DTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAA 394 (579)
Q Consensus 320 ~~~~~~~~~~~~~g~p~~~-i~W~~~~~~~--~~~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 394 (579)
.......+.|.+.|.|.+. +.|++++..+ .......... .......|.|.++..+|+|.|+|.|.|..|.....+
T Consensus 224 ~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~ 303 (524)
T 2ec8_A 224 REGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTT 303 (524)
T ss_dssp ETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEE
T ss_pred EcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEE
Confidence 1222334568899999886 9999999874 3222221110 012245899999999999999999999999998899
Q ss_pred EEEEEecccCCCCCeeecCC---CceeeecCCCeEEEEEEEeeCCCe-EEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEc
Q psy16852 395 TLAVEEKEESGEAPKFTKPL---KPVIAEAQSPATLKATVTGRPTPS-ICWYRGKEEILPDNGHTMEFNPTTGECVLSIS 470 (579)
Q Consensus 395 ~l~v~~~~~~~~~p~~~~~~---~~~~~~~g~~~~l~C~~~g~p~~~-v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~ 470 (579)
.|.|.. +|.+...+ ....+.+|+.++|.|.+.|.|.|. +.|+++|..+.......+..
T Consensus 304 ~l~V~~------~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~------------ 365 (524)
T 2ec8_A 304 TLEVVD------KGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKS------------ 365 (524)
T ss_dssp EEEEES------SCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESC------------
T ss_pred EEEEec------cCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEE------------
Confidence 999986 55555432 357899999999999999999998 99999998886544211110
Q ss_pred cccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEeeCCcccccccCCccccC
Q psy16852 471 EATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKT 550 (579)
Q Consensus 471 ~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~v~~~p~~~~~ 550 (579)
.+.|.| ...+.|.|.++..+|+|.|+|.|.|..|....++.|.|. .+|.+...
T Consensus 366 ----~~~~~~--------------~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~---------~~P~i~~~ 418 (524)
T 2ec8_A 366 ----ENESNI--------------RYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVN---------TKPEILTY 418 (524)
T ss_dssp ----CSSSCC--------------EEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC---------EEEEEEEE
T ss_pred ----ccCCCc--------------eeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEe---------cCCeEeec
Confidence 010111 124569999999999999999999999999999888864 67777665
Q ss_pred CCceEEecCCcEEEEEEeccceeeccccC
Q psy16852 551 PETAKVMDGQSVLFTAQVGYSERLEIPLI 579 (579)
Q Consensus 551 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~ 579 (579)
+. ...| +|.|.+.++|++.|.|.
T Consensus 419 ~~---~~~g---~l~C~~~g~P~p~i~W~ 441 (524)
T 2ec8_A 419 DR---LVNG---MLQCVAAGFPEPTIDWY 441 (524)
T ss_dssp EC---CSSS---CEEEEEEEESCCEEECC
T ss_pred cc---CcCc---EEEEEEEeecCCEEEEE
Confidence 54 2355 99999999999998883
No 23
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=100.00 E-value=2e-42 Score=339.11 Aligned_cols=371 Identities=22% Similarity=0.357 Sum_probs=271.3
Q ss_pred CCCccccccCceeeeCCCCEEEEEEEEe-eCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCC-----CCCCCEEEE
Q psy16852 5 LAPRFIEKIQPVVSHQEQPALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINP-----TKEDIGVYT 78 (579)
Q Consensus 5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~-~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~-----~~~d~G~Y~ 78 (579)
....|..+|.++.+.+|++++|.|.+.+ .|.+.+.|+|+|..+......+.... ....|.|.++ +.+|+|.|+
T Consensus 20 ~~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~~~~D~G~Y~ 98 (403)
T 3laf_A 20 RSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQL-PNGSLLIQNILHSRHHKPDEGLYQ 98 (403)
T ss_dssp CSSEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEEC-TTSCEEECSCCCBTTBCSSCEEEE
T ss_pred eeEEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEEe-cCCcEEEeeeeccCCCCCcceEEE
Confidence 4566888999999999999999999987 46778999999999865422222222 2246778777 678999999
Q ss_pred EEEEcCCeee--EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCC-ceEE
Q psy16852 79 CKATNIGGVA--TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNG-HTME 155 (579)
Q Consensus 79 C~~~~~~g~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~-~~~~ 155 (579)
|.+.+..+.. ...+.+.|.. ++.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..... ....
T Consensus 99 C~~~~~~~~~~~s~~~~l~v~~------p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~ 172 (403)
T 3laf_A 99 CEASLGDSGSIISRTAKVMVAG------PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVV 172 (403)
T ss_dssp EEEECGGGCEEECCCEEEEECC------CCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEE
T ss_pred EEEEeCCCccEEEEEEEEEecC------CCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEE
Confidence 9999654322 2345555542 45666667778899999999999999999999999999987753222 2222
Q ss_pred EcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeE-EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEE
Q psy16852 156 FNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAE-CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAE 234 (579)
Q Consensus 156 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~ 234 (579)
... ...|.|.++..+|+|.|+|.+.|..+... ....+.+.... ....++.+...+....+.+|+.+.|.|.
T Consensus 173 ~~~---~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p-----~~~~~~~~~~~~~~~~~~~g~~~~l~C~ 244 (403)
T 3laf_A 173 VLP---SGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDP-----GLHRQLYFLQRPSNVIAIEGKDAVLECC 244 (403)
T ss_dssp ECT---TSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCC-----CCCEEEEEEECCCCEEEETTSCEEECCE
T ss_pred EcC---CceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCC-----CcccCceEecCCCceEecCCCcEEEEEE
Confidence 221 23699999999999999999999876532 23444443211 1111223444556677889999999999
Q ss_pred EEccCCCeEEEEECCEEeccCc-eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeee
Q psy16852 235 YTGTPTPEVKWFKNGKEIVSKD-IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVE 313 (579)
Q Consensus 235 ~~~~p~~~v~W~~~~~~i~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~ 313 (579)
+.+.|.+.+.|++++..+.... .........|.|.++..+|+|.|+|.|.|..|....+..+.|...+ .+.....
T Consensus 245 ~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p--~~~~~~~-- 320 (403)
T 3laf_A 245 VSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPP--WFLNHPS-- 320 (403)
T ss_dssp EEEESCCEEEEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEE--EEEECCC--
T ss_pred cCCCCCCeEEEEECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCC--cEeecCc--
Confidence 9999999999999999886543 2222233579999999999999999999999988777777775432 1111110
Q ss_pred ccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEE
Q psy16852 314 SHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAA 393 (579)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 393 (579)
...........+.|.+.|.|.+.+.|+++|..+........... . .|.|.++..+|+|.|+|.|.|..|....+
T Consensus 321 --~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~--~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~ 394 (403)
T 3laf_A 321 --NLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGG--S--NLRILGVVKSDEGFYQCVAENEAGNAQSS 394 (403)
T ss_dssp --CEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEETT--T--EEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred --ceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEecC--c--cEEEeccccccCEEEEEEEEcCCceEEEE
Confidence 00011122234568899999999999999999887766554322 2 79999999999999999999999999999
Q ss_pred EEEEEEe
Q psy16852 394 ATLAVEE 400 (579)
Q Consensus 394 ~~l~v~~ 400 (579)
+.|.|..
T Consensus 395 ~~l~V~~ 401 (403)
T 3laf_A 395 AQLIVPK 401 (403)
T ss_dssp EEEECCC
T ss_pred EEEEEeC
Confidence 9998875
No 24
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=100.00 E-value=4.7e-41 Score=345.75 Aligned_cols=402 Identities=15% Similarity=0.202 Sum_probs=278.1
Q ss_pred CCCceEEccCCcEEEEEEEEeecC---CeEEEEECCEEc-----cC---------CCCceEEEcCCCCeEEEEECcCCCC
Q psy16852 111 PLKPVIAEAQSPATLKATVTGRPT---PSICWYRGKEEI-----LP---------DNGHTMEFNPTTGECVLSISEATPQ 173 (579)
Q Consensus 111 ~~~~~~~~~g~~~~l~C~~~~~p~---~~i~W~~~~~~~-----~~---------~~~~~~~~~~~~~~~~l~i~~~~~~ 173 (579)
.+..+.+.+|+.++|.|.+.+.|. ..+.|++++..+ .. ..+..+.....++...|.|.+++.+
T Consensus 6 ~P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~ 85 (585)
T 2ocw_A 6 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD 85 (585)
T ss_pred CcceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCcc
Confidence 345677889999999999987754 389999987532 11 1223333333556678999999999
Q ss_pred CCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCCeEEEEECCEEe
Q psy16852 174 DEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTPEVKWFKNGKEI 252 (579)
Q Consensus 174 d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~i 252 (579)
|+|.|+|.+.+..+.......+.+. .+|.+...+....+.+|+.+.|.|.+.+. |.+.+.|++++...
T Consensus 86 D~G~Y~C~~~n~~~~~~~~~~l~V~-----------~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~ 154 (585)
T 2ocw_A 86 DSGRYKCGLGINSRGLSFDVSLEVS-----------QGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLY 154 (585)
T ss_pred cCEEEEEEcccCCCCceEEEEEEEe-----------cCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCC
Confidence 9999999999888776666666654 45666666677789999999999999865 45689999987532
Q ss_pred c----c----------CceEEe-----CCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeee
Q psy16852 253 V----S----------KDIETK-----DNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVE 313 (579)
Q Consensus 253 ~----~----------~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~ 313 (579)
. . ...... .....|.|.+++.+|+|.|+|.|.|..|.....+.|.|...+...+. +.
T Consensus 155 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~~~~----~~ 230 (585)
T 2ocw_A 155 PVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVY----ED 230 (585)
T ss_pred ceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCCCceeE----Ec
Confidence 1 1 111111 12237999999999999999999999988777777776543222111 11
Q ss_pred ccccCceeeeecCeeEEEeeeCC---CeEEEE-ECCEE---cc---------CCCeEEEEE-CCCCeEEEEEcccCCCCC
Q psy16852 314 SHPTASFQWFIHSEPVVVTGKPT---PLVTWS-HDGTP---MK---------EGKEVTIYQ-DTDGLCKLAISEVFPENA 376 (579)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~g~p~---~~i~W~-~~~~~---~~---------~~~~~~~~~-~~~~~~~l~i~~~~~~d~ 376 (579)
.+ ....+.|.+ +.|. +.+.|+ ++|.. +. ...++.+.. ...+.+.|.|.++..+|+
T Consensus 231 ~G-------~~v~l~C~~-~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~ 302 (585)
T 2ocw_A 231 LR-------GSVTFHCAL-GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDA 302 (585)
T ss_pred CC-------CcEEEEEEc-CCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhC
Confidence 11 112233554 3333 678886 77732 11 122333322 224555899999999999
Q ss_pred EEEEEEEEcCceeEE-----EEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeE----EEee--CC
Q psy16852 377 GLYSCTAVNPVGEAV-----AAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSI----CWYR--GK 445 (579)
Q Consensus 377 G~Y~C~a~n~~g~~~-----~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v----~W~~--~~ 445 (579)
|.|+|.|.|. |... ..+.|.|.. +|.+...+....+.+|+.++|.|.+.|.|.|.+ .|++ +|
T Consensus 303 G~Y~C~a~n~-g~~~~~~~~~~~~l~V~~------~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g 375 (585)
T 2ocw_A 303 GRYLCGAHSD-GQLQEGSPIQAWQLFVNE------ESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNG 375 (585)
T ss_pred EEEEEEEEcC-CCccccCceeeEEEEEec------ccccccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCC
Confidence 9999999996 4343 677888876 566666667788999999999999999999976 7999 87
Q ss_pred E--EcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee--CCeeEEEEeecccccceeEEEEEEeCC
Q psy16852 446 E--EILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD--GNRSVLLISKITRDQIGDVTCRAENVA 521 (579)
Q Consensus 446 ~--~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 521 (579)
. .+........ ....+++ .+..+ .....|+|.+++.+|+|.|+|.| |..
T Consensus 376 ~~~~l~~~~~~~~-----------------~~~~~r~---------~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~ 428 (585)
T 2ocw_A 376 RCPLLVDSEGWVK-----------------AQYEGRL---------SLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGD 428 (585)
T ss_pred CCceeeeecceee-----------------cccCCCE---------EEeccCCCcEEEEEECCCChhhCEEEEEcc-cCC
Confidence 6 4433211100 0011111 11111 12235999999999999999999 999
Q ss_pred eeEEEEEEEEEeeCCcccccccCCccccCCCceEEecCCcEEEEEEec----cceeecccc
Q psy16852 522 GSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVG----YSERLEIPL 578 (579)
Q Consensus 522 g~~~~~~~l~v~~~~~~~~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~----~~~~~~~~~ 578 (579)
|....++.|.|. ..+|.+ ..+....+..|++++|.|.+. ++|.+.|.|
T Consensus 429 g~~~~~~~l~V~--------~~~p~~-~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W 480 (585)
T 2ocw_A 429 TLWRTTVEIKII--------EGEPNL-KVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKW 480 (585)
T ss_pred CccceeEEEEEe--------cCcccc-ccCCceeEecCCcEEEEEEecCCCCCCccEEEEE
Confidence 999888999875 224444 347788899999999999996 667777666
No 25
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=100.00 E-value=3.9e-42 Score=335.18 Aligned_cols=357 Identities=19% Similarity=0.238 Sum_probs=254.0
Q ss_pred CCceecCCCc-eEEccCCcEEEEEEEEeecCCeEEEEE-CCEEccCCCCceEEEcCCCCeEEEEECcCCCCC------Ce
Q psy16852 105 APKFTKPLKP-VIAEAQSPATLKATVTGRPTPSICWYR-GKEEILPDNGHTMEFNPTTGECVLSISEATPQD------EA 176 (579)
Q Consensus 105 ~~~~~~~~~~-~~~~~g~~~~l~C~~~~~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d------~G 176 (579)
+|.|...+.. +.+.+|+.++|.|.+.|.|.+.|.|++ ++..+....+..... .+ ++|.|.+++.+| +|
T Consensus 3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~~~--~~--~~L~i~~~~~~d~~~~~d~G 78 (388)
T 2v5m_A 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQIS--SD--GKLVFPPFRAEDYRQEVHAQ 78 (388)
T ss_dssp EEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEEC--ST--TEEEECCCCGGGCCHHHHEE
T ss_pred CCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceEEc--CC--ceEEecccChhhccccccCc
Confidence 3455554443 567889999999999999999999999 676665443333321 22 369999999987 99
Q ss_pred EEEEEEEcCCceeE-EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCC---CeEEEEECCEEe
Q psy16852 177 VYSVKAVNTFGRAE-CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPT---PEVKWFKNGKEI 252 (579)
Q Consensus 177 ~Y~C~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~v~W~~~~~~i 252 (579)
.|+|.+.|..|... ....+.+. .+|.+...+....+.+|+.+.|.|.+.+.+. +.+.|++++..+
T Consensus 79 ~Y~C~a~n~~g~~~s~~~~v~v~-----------~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~ 147 (388)
T 2v5m_A 79 VYACLARNQFGSIISRDVHVRAV-----------VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEEN 147 (388)
T ss_dssp EEEEEEEETTEEEECCCEEEEEE-----------CCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCE
T ss_pred eEEEEEEccCCeEEecceEEEEc-----------cccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcc
Confidence 99999999988642 22333332 3444444455667889999999999987643 689999998766
Q ss_pred ccCc-----eEEeCCeEEEEEcccCCCCC-eEEEEEEEcCCeeeEE-E---EEEEEEeccceeeeeeeeeeccccCceee
Q psy16852 253 VSKD-----IETKDNVTKLVIKQTTKKTT-GKYEIRVVNEAGEART-S---GSVTITVAEAETVMMDVRVESHPTASFQW 322 (579)
Q Consensus 253 ~~~~-----~~~~~~~~~l~i~~~~~~d~-G~y~C~a~n~~g~~~~-~---~~~~v~~~~~~~~~l~~~~~~~~~~~~~~ 322 (579)
.... .........|.|.+++.+|+ |.|+|.+.|..+.... + ..+.|.................+......
T Consensus 148 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G 227 (388)
T 2v5m_A 148 YFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVA 227 (388)
T ss_dssp ECSSSCBTTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETT
T ss_pred cccccCCCCcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeC
Confidence 4321 11222334799999999999 9999999987643322 1 23444322110000000000001111112
Q ss_pred eecCeeEEEeeeCCCeEEEEECCEEc------cCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEE
Q psy16852 323 FIHSEPVVVTGKPTPLVTWSHDGTPM------KEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATL 396 (579)
Q Consensus 323 ~~~~~~~~~~g~p~~~i~W~~~~~~~------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 396 (579)
....+.|.+.|.|.+.+.|++++..+ ....+.... .+ .|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus 228 ~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~---~~--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 302 (388)
T 2v5m_A 228 HTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQV---SG--TLIIKDAVVEDSGKYLCVVNNSVGGESVETVL 302 (388)
T ss_dssp SCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEEE---TT--EEEESSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred CcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceecc---cC--EEEECcCCHHHCeEEEEEEecCCCceeEEEEE
Confidence 23345688899999999999975432 222232221 12 89999999999999999999999999889999
Q ss_pred EEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCC
Q psy16852 397 AVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 476 (579)
Q Consensus 397 ~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d 476 (579)
.|.. +|.+...+....+.+|+.++|.|.+.|.|.|.+.|+++|..+..+
T Consensus 303 ~V~~------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~------------------------- 351 (388)
T 2v5m_A 303 TVTA------PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS------------------------- 351 (388)
T ss_dssp EEEE------EEEEEEESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCC-------------------------
T ss_pred EEeC------CCccccCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECccC-------------------------
Confidence 9986 566666667778999999999999999999999999999887432
Q ss_pred ceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 477 EAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 477 ~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
.+.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 352 --------------------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 387 (388)
T 2v5m_A 352 --------------------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387 (388)
T ss_dssp --------------------SSEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred --------------------CCEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence 124999999999999999999999999999999886
No 26
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=100.00 E-value=2.1e-41 Score=330.07 Aligned_cols=357 Identities=13% Similarity=0.102 Sum_probs=229.8
Q ss_pred CccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGG 86 (579)
Q Consensus 7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g 86 (579)
+.++..|.++.|.+|+++.|.|.+.+.|.+.|.|++++..+.....+. ........|.|.+++.+|+|.|+|.|.|..|
T Consensus 49 ~~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~~~-~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g 127 (423)
T 3qs7_E 49 SGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFD-LQNRGVVSMVILKMTETQAGEYLLFIQSEAT 127 (423)
T ss_dssp -------CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC------CEEEEEESSCCSSSCSEEEEEEEC--C
T ss_pred CcceeccccEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCccceec-cccceEEEEEEeecCcccCEEEEEEEEcCCC
Confidence 345666779999999999999999999999999999998876533221 1112235799999999999999999999999
Q ss_pred eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEE
Q psy16852 87 VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLS 166 (579)
Q Consensus 87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~ 166 (579)
.....+.|.|... |.+ ....+..+..|+.+.|.|.+.|.|.|.|.|++++..+...... .. .+ .+.
T Consensus 128 ~~~~~~~l~V~~~------p~~-~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~-~~----~~--~~~ 193 (423)
T 3qs7_E 128 NYTILFTVSIRNT------LLY-TLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEE-SP----AV--VKK 193 (423)
T ss_dssp EEEEEEEEEEC------------CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC------------------C--EEE
T ss_pred cEEEEEEEEEecC------ccc-cccCCcEeccCCceEEEEEEeeecCCeEEEEECCCCCcccccc-cc----cc--ccc
Confidence 8887788887632 222 1122334556888899999999999999999988754321100 00 00 000
Q ss_pred EC-cCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCCeEE
Q psy16852 167 IS-EATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTPEVK 244 (579)
Q Consensus 167 i~-~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~v~ 244 (579)
.. .+...|+|.|+|.|.|..|.... ..+.+.+ ..+|.+ ++....+.+|+.+.|.|.+.+ .|.+.+.
T Consensus 194 ~~~~l~~~d~G~Y~C~A~N~~G~~~~-~~~~l~V---------~~~p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p~i~ 261 (423)
T 3qs7_E 194 EEKVLHELFGTDIRCCARNELGRECT-RLFTIDL---------NQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLT 261 (423)
T ss_dssp CCSEECCCCSSCEEEEEECSSCEEEE-ECEEEES---------SSCCCS--STTEEEEETTSCEEEEEEEEESSSCCCEE
T ss_pred cceEEecccCeEEEEEEEcCCCCcce-eeEEEEE---------ecCCcc--CCCceEEeCCCeEEEEEEEEcCCCCcEEE
Confidence 00 11578999999999999887644 2233321 122222 233567889999999999998 6778999
Q ss_pred EEECCEEeccCce----EE-----eCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeecc
Q psy16852 245 WFKNGKEIVSKDI----ET-----KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESH 315 (579)
Q Consensus 245 W~~~~~~i~~~~~----~~-----~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~ 315 (579)
|+++|..+..... .. ......|.|.++..+|+|.|+|.|.|. ...++.|.|. ..+.+.+.....
T Consensus 262 W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~--~~p~i~~~~~~~-- 334 (423)
T 3qs7_E 262 WELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIV--EKGFINATNSSE-- 334 (423)
T ss_dssp EEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEE--SSCEEEEC---C--
T ss_pred EEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEE--eCCcceEcCCCc--
Confidence 9999987755321 11 122357999999999999999999887 3444444444 333333221100
Q ss_pred ccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEE
Q psy16852 316 PTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAAT 395 (579)
Q Consensus 316 ~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 395 (579)
...........+.|.+.|.|.|.++|+++|..+....... .+. ..+.+.....+|+|.|+|.|.|..|....++.
T Consensus 335 ~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~-~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~ 409 (423)
T 3qs7_E 335 DYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL----DNG-YSISKFCNHKHQPGEYIFHAENDDAQFTKMFT 409 (423)
T ss_dssp EECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBC----SSS-SEEEEECCCTTCCSCEEEEEEETTEEEEEEEE
T ss_pred cEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCccccc----cCC-cEEEEEecccccCEEEEEEEEcCCceEEEEEE
Confidence 0011112334456999999999999999999986543100 001 12222455678999999999999999999999
Q ss_pred EEEEecc
Q psy16852 396 LAVEEKE 402 (579)
Q Consensus 396 l~v~~~~ 402 (579)
|.|...+
T Consensus 410 L~v~~~p 416 (423)
T 3qs7_E 410 LNIRSGT 416 (423)
T ss_dssp EC-----
T ss_pred EEEecCC
Confidence 9998754
No 27
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=100.00 E-value=3.4e-41 Score=328.56 Aligned_cols=358 Identities=22% Similarity=0.313 Sum_probs=254.6
Q ss_pred CCccccccCc-eeeeCCCCEEEEEEEEeeCCCeeEEEE-CCEEecCCCCEEEEEeCCEEEEEEcCCCCCC------CEEE
Q psy16852 6 APRFIEKIQP-VVSHQEQPALFTCKVEGHPLPTMTWQK-DGTELHATEHYLITTVESVSTLEIINPTKED------IGVY 77 (579)
Q Consensus 6 ~p~~~~~p~~-~~v~~G~~~~l~C~~~~~~~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d------~G~Y 77 (579)
+|.|+..|.+ +.+.+|+.++|.|.+.|.|.+.|+|+| +|..+.......... ...+|.|.+++.+| +|.|
T Consensus 3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~~~--~~~~L~i~~~~~~d~~~~~d~G~Y 80 (388)
T 2v5m_A 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQIS--SDGKLVFPPFRAEDYRQEVHAQVY 80 (388)
T ss_dssp EEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEEC--STTEEEECCCCGGGCCHHHHEEEE
T ss_pred CCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceEEc--CCceEEecccChhhccccccCceE
Confidence 7899998887 668899999999999999999999999 888876544332222 23579999999987 9999
Q ss_pred EEEEEcCCeeeE-EEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecC---CeEEEEECCEEccCCC---
Q psy16852 78 TCKATNIGGVAT-CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT---PSICWYRGKEEILPDN--- 150 (579)
Q Consensus 78 ~C~~~~~~g~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~i~W~~~~~~~~~~~--- 150 (579)
+|.|.|..|... ..+.+.+.. +|.+...+....+.+|+.+.|.|.+.+.+. +.+.|++++..+....
T Consensus 81 ~C~a~n~~g~~~s~~~~v~v~~------~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~ 154 (388)
T 2v5m_A 81 ACLARNQFGSIISRDVHVRAVV------AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEY 154 (388)
T ss_dssp EEEEEETTEEEECCCEEEEEEC------CCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCB
T ss_pred EEEEEccCCeEEecceEEEEcc------ccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCC
Confidence 999999988643 455666643 344445556678899999999999977653 7999999987653211
Q ss_pred CceEEEcCCCCeEEEEECcCCCCCC-eEEEEEEEcCCceeEE-E---EEEEEeeccccCCCCccCCCeE-eccCCceeeC
Q psy16852 151 GHTMEFNPTTGECVLSISEATPQDE-AVYSVKAVNTFGRAEC-R---ANLVLRKATTIDKPRVLEAPTI-VRPLQALLVP 224 (579)
Q Consensus 151 ~~~~~~~~~~~~~~l~i~~~~~~d~-G~Y~C~~~~~~~~~~~-~---~~~~v~~~~~~~~~~~~~~p~~-~~~~~~~~~~ 224 (579)
..+..... .+.|.|.+++.+|+ |.|+|.+.+..+.... . ..+.+..... ...|.+ ........+.
T Consensus 155 ~~~~~~~~---~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~------~~~p~~~~~~~~~~~v~ 225 (388)
T 2v5m_A 155 DGKYLVLP---SGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS------SSAPRTPALVQKPLELM 225 (388)
T ss_dssp TTTEEECT---TSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCS------CEEEECCSSCCCCEEEE
T ss_pred CCcEEEcc---CCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCc------CCCCcCccccCCceEEe
Confidence 11222221 23699999999999 9999999987643322 1 1233321100 000111 0112234577
Q ss_pred CCCeEEEEEEEEccCCCeEEEEECCEEec------cCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEE
Q psy16852 225 KDSTVTLEAEYTGTPTPEVKWFKNGKEIV------SKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298 (579)
Q Consensus 225 ~g~~~~l~C~~~~~p~~~v~W~~~~~~i~------~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v 298 (579)
+|+.+.|.|.+.+.|.+.+.|++++..+. ... ........|.|.++..+|+|.|+|.|.|..|.......+.|
T Consensus 226 ~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 304 (388)
T 2v5m_A 226 VAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLND-RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 304 (388)
T ss_dssp TTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSS-SEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred eCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccC-ceecccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEE
Confidence 89999999999999999999999753221 111 11112347999999999999999999999998777776666
Q ss_pred EeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEE
Q psy16852 299 TVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGL 378 (579)
Q Consensus 299 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 378 (579)
...+ .+.+.... ..........+.|.+.|.|.+.+.|+++|..+.... ..|.|.++..+|+|.
T Consensus 305 ~~~p--~~~~~~~~----~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~~-----------~~L~i~~v~~~d~G~ 367 (388)
T 2v5m_A 305 TAPL--SAKIDPPT----QTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE-----------SVLRIESVKKEDKGM 367 (388)
T ss_dssp EEEE--EEEEESSE----EEECTTSCEEEEEEEEEECCCEEEEEETTEECSCCS-----------SEEEESSCCGGGCEE
T ss_pred eCCC--ccccCCCc----EEecCCCCEEEEEEeccccCCeEEEEECCEECccCC-----------CEEEEecCChhhCEE
Confidence 5332 22221110 001111223456899999999999999999886532 279999999999999
Q ss_pred EEEEEEcCceeEEEEEEEEE
Q psy16852 379 YSCTAVNPVGEAVAAATLAV 398 (579)
Q Consensus 379 Y~C~a~n~~g~~~~~~~l~v 398 (579)
|+|.|.|..|....++.|.|
T Consensus 368 Y~C~a~N~~G~~~~~~~l~V 387 (388)
T 2v5m_A 368 YQCFVRNDRESAEASAELKL 387 (388)
T ss_dssp EEEEEECSSCEEEEEEEEEE
T ss_pred EEEEEEcCCCcEEEEEEEEe
Confidence 99999999999999888876
No 28
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=100.00 E-value=1e-38 Score=296.69 Aligned_cols=277 Identities=29% Similarity=0.493 Sum_probs=236.8
Q ss_pred cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
.+.||.|...|.++.+.+|+.++|.|.+.+.|.+.+.|+++|..+....++..........|.|.+++.+|+|.|+|.+.
T Consensus 2 ~~~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~ 81 (284)
T 2rik_A 2 AMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYAS 81 (284)
T ss_dssp CCCCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred CcCCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEE
Confidence 36799999999999999999999999999988889999999999988888888888888999999999999999999999
Q ss_pred cCCeeeEEEEEEEEEecccCCCCCceecC-CCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCC
Q psy16852 83 NIGGVATCSANLIVLEKEESGEAPKFTKP-LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161 (579)
Q Consensus 83 ~~~g~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~ 161 (579)
|..|.....+.+.|.. +|.+... .....+.+|+.+.|.|.+.+.|.+.+.|++++..+........... .+
T Consensus 82 n~~g~~~~~~~l~V~~------~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~--~~ 153 (284)
T 2rik_A 82 NVAGKDSCSAQLGVQE------PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFV--ES 153 (284)
T ss_dssp ETTEEEEEEEEEEEEC------CCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEE--TT
T ss_pred ECCceEEEEEEEEccC------CCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEc--CC
Confidence 9999888888888875 3444433 3345688999999999999999999999999999877665554433 34
Q ss_pred eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCC
Q psy16852 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP 241 (579)
Q Consensus 162 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~ 241 (579)
...|.|.+++.+|+|.|+|.+.|..|.......+.+. .+|.+...+....+.+|+.+.|.|.+.+.|.+
T Consensus 154 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~-----------~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~ 222 (284)
T 2rik_A 154 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK-----------EPPVFRKKPHPVETLKGADVHLECELQGTPPF 222 (284)
T ss_dssp EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEE-----------CCCBCCSCCCCEEECTTCCEEEEEECBSSSCC
T ss_pred EEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEe-----------cCCcceeCCCcceecCCCeEEEEEEEEecCCC
Confidence 6789999999999999999999999887777777665 56666666667778899999999999999999
Q ss_pred eEEEEECCEEeccCc---eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEE
Q psy16852 242 EVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298 (579)
Q Consensus 242 ~v~W~~~~~~i~~~~---~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v 298 (579)
.+.|++++..+.... .........|.|.++..+|+|.|+|.|.|..|....++.+.|
T Consensus 223 ~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 282 (284)
T 2rik_A 223 QVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282 (284)
T ss_dssp EEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEE
Confidence 999999999987655 233445578999999999999999999999999887777665
No 29
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=1.6e-40 Score=330.33 Aligned_cols=369 Identities=14% Similarity=0.113 Sum_probs=253.1
Q ss_pred CCCceEEccCCcEEEEEEEEeecCCeE-----EEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcC
Q psy16852 111 PLKPVIAEAQSPATLKATVTGRPTPSI-----CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNT 185 (579)
Q Consensus 111 ~~~~~~~~~g~~~~l~C~~~~~p~~~i-----~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 185 (579)
.+....+.+|+.++|.|.+.+ |.+.+ .|++++..+.. .....|.|.+++. |+| |+|.+.+.
T Consensus 5 ~P~~~~v~~G~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~~~~-----------~~~~~l~i~~v~~-d~g-Y~C~a~~~ 70 (450)
T 1z7z_I 5 SPSKVILPRGGSVLVTCSTSC-DQPMLLGIETPLPKKELLLPG-----------NNRKVYELSNVQE-DSQ-PMCYSNCP 70 (450)
T ss_dssp ESSEEEEETTEEEEEEEECCS-SCCCEEEECSSSCEEECCSST-----------TTEEEEEEEEECS-CBC-CEEEEEET
T ss_pred CCCceEEecCCcEEEEEEccC-CCcccccccceeeecceEecC-----------CCceEEEEEeccc-CCe-eEEEEeCC
Confidence 346677889999999999998 88888 89987654321 1234788999987 999 99999876
Q ss_pred CceeEEEEEEEEeeccccCCCCccCCCeEe-ccCCceeeCCCCeEEEEEEEEccCCC---eEEEEECCEEeccCceEEeC
Q psy16852 186 FGRAECRANLVLRKATTIDKPRVLEAPTIV-RPLQALLVPKDSTVTLEAEYTGTPTP---EVKWFKNGKEIVSKDIETKD 261 (579)
Q Consensus 186 ~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~~p~~---~v~W~~~~~~i~~~~~~~~~ 261 (579)
.+.......+.+. .+|.+. ..+....+.+|+.+.|.|.+.+.|++ .+.|++++..+.........
T Consensus 71 ~~~~~~~~~l~V~-----------~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~~~ 139 (450)
T 1z7z_I 71 DGQSTAKTFLTVY-----------WTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEP 139 (450)
T ss_dssp TEEEEEECEEEEE-----------BCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTT
T ss_pred CCcceeEEEEEEE-----------eCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccccc
Confidence 6655555666654 234333 44555678899999999999998887 89999999988654322233
Q ss_pred CeEEEEEcccCCCCCeEEEEEEEcCCeeeE--------EEEEEEEEec--cceeeeeeeeeeccccCceeeeecCeeEEE
Q psy16852 262 NVTKLVIKQTTKKTTGKYEIRVVNEAGEAR--------TSGSVTITVA--EAETVMMDVRVESHPTASFQWFIHSEPVVV 331 (579)
Q Consensus 262 ~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~--------~~~~~~v~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 331 (579)
....|.|.++..+|+|.|+|.|.|..|... ....+.|... ..+.+... ..........+.|.+
T Consensus 140 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~-------~~v~~G~~v~l~C~~ 212 (450)
T 1z7z_I 140 AEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSP-------RVLEVDTQGTVVCSL 212 (450)
T ss_dssp EEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECC-------SEEETTSEEEEEEEE
T ss_pred cceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCc-------eeEEeCCcEEEEEEe
Confidence 356899999999999999999999866422 1122222211 00111000 111122334456888
Q ss_pred eee-C--CCeEEEEECCEEccCCCeEEEEECCCCe-EEEEEcccCCCCCE--EEEEEEEcCceeEEEEEEEEEEecccCC
Q psy16852 332 TGK-P--TPLVTWSHDGTPMKEGKEVTIYQDTDGL-CKLAISEVFPENAG--LYSCTAVNPVGEAVAAATLAVEEKEESG 405 (579)
Q Consensus 332 ~g~-p--~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~d~G--~Y~C~a~n~~g~~~~~~~l~v~~~~~~~ 405 (579)
.|. | .+.+.|++++..+.. .... ..+.. ..+.+ ++..+|+| .|+|.|.|..|.......|.|...+
T Consensus 213 ~g~~P~~~~~~~W~~~~~~~~~--~~~~--~~~~~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~--- 284 (450)
T 1z7z_I 213 DGLFPVSEAQVHLALGDQRLNP--TVTY--GNDSFSAKASV-SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP--- 284 (450)
T ss_dssp ESCTTGGGCEEEEEETTEECCC--EEEE--ETTEEEEEEEE-ECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCC---
T ss_pred eCCCCCCceEEEEeCCCEeCCc--eEEe--cCCceeEEEEE-EeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCC---
Confidence 888 7 689999999998876 2222 22211 12222 67889999 9999999999999889999998753
Q ss_pred CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS 485 (579)
Q Consensus 406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 485 (579)
+|.+... ...+.+|+.++|.|.+. |.|.+.| +|..+...
T Consensus 285 -~p~i~~~--~~~v~~G~~v~l~C~~~--p~p~i~W--~g~~~~~~---------------------------------- 323 (450)
T 1z7z_I 285 -APNVILT--KPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPL---------------------------------- 323 (450)
T ss_dssp -CCEEEES--CSEEETTCEEEEEEEC------------------------------------------------------
T ss_pred -CCeEecC--CeeEeCCCcEEEEEecC--CCCEeEE--CCEEcCCC----------------------------------
Confidence 4666533 45789999999999997 8889999 66665211
Q ss_pred cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCe-e---EEEEEEEEEeeCCcccccccCCccccCC--CceEEecC
Q psy16852 486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAG-S---VTCTATLSLLPESEVTDVMESPRFIKTP--ETAKVMDG 559 (579)
Q Consensus 486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-~---~~~~~~l~v~~~~~~~~v~~~p~~~~~~--~~~~~~~g 559 (579)
+....|.|..+..+|+|.|+|.|.|..| . ...++.|.| ..+|.+...+ ....+..|
T Consensus 324 ---------~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V---------~~~P~~~~~~~p~~~~~~~g 385 (450)
T 1z7z_I 324 ---------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRV---------LYGPRLDERDCPGNWTWPEN 385 (450)
T ss_dssp ---------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEE---------EEEEECCSTTSCSEEEEETT
T ss_pred ---------CceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEE---------ecCCceeeccCCCceeEcCC
Confidence 1122499999999999999999997665 3 345666665 4667766553 67789999
Q ss_pred CcEEEEEEeccceeecccc
Q psy16852 560 QSVLFTAQVGYSERLEIPL 578 (579)
Q Consensus 560 ~~~~l~C~~~~~~~~~~~~ 578 (579)
+.++|.|.+.++|++.|.|
T Consensus 386 ~~~~l~C~~~g~P~p~i~W 404 (450)
T 1z7z_I 386 SQQTPMCQAWGNPLPELKC 404 (450)
T ss_dssp CEECCCCCCEEESCCEEEE
T ss_pred CeEEEEEecccCCCCcEEE
Confidence 9999999999999999887
No 30
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=100.00 E-value=1.9e-39 Score=321.55 Aligned_cols=396 Identities=15% Similarity=0.185 Sum_probs=257.1
Q ss_pred ccccccCceeeeCCCCEEEEEEEEeeCC----CeeEEEECC--EEe------------cCCCCEEEEEeCCEEEEEEcCC
Q psy16852 8 RFIEKIQPVVSHQEQPALFTCKVEGHPL----PTMTWQKDG--TEL------------HATEHYLITTVESVSTLEIINP 69 (579)
Q Consensus 8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~~----~~v~W~~~g--~~~------------~~~~~~~~~~~~~~~~L~i~~~ 69 (579)
.|...|.++.+.+|++++|.|.+.+.+. +.+.|||++ ..+ ....++.....+....|.|.++
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 82 (438)
T 1qgc_4 3 VLTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPV 82 (438)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSC
T ss_pred ceEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCC
Confidence 4666789999999999999999987765 389999963 221 1235666666667789999999
Q ss_pred CCCCCEEEEEEEEcCCeee-EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEe-ecCC-eEEEEECCEEc
Q psy16852 70 TKEDIGVYTCKATNIGGVA-TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTP-SICWYRGKEEI 146 (579)
Q Consensus 70 ~~~d~G~Y~C~~~~~~g~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~ 146 (579)
+.+|+|.|+|.|.|..+.. ...+.+.|.... .+|.+..........+|+.+.|.|.+.+ .|.+ .|.|++++..+
T Consensus 83 ~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~---~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~ 159 (438)
T 1qgc_4 83 EADDVATYYCQQSNEVPLTFGAGTKLDLKRAD---AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER 159 (438)
T ss_dssp CGGGCEEEEEEECSSTTCCBCCCEEEEECCCC---BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred cCcCCeeEEEEEecCCCccccCceeEEecCCC---CCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEc
Confidence 9999999999999876532 334566664321 2444443222223346889999999977 5666 99999999887
Q ss_pred cCCCCceEEEcC-CCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCce
Q psy16852 147 LPDNGHTMEFNP-TTG----ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQAL 221 (579)
Q Consensus 147 ~~~~~~~~~~~~-~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~ 221 (579)
............ .++ .+.|.|.++..+|+|.|+|.|.|..+.......+... .++.....+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 228 (438)
T 1qgc_4 160 QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN-----------ECEVMLVESGGG 228 (438)
T ss_dssp CTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEETT-----------C-CCEEEEECCE
T ss_pred CCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceecccccc-----------cceeEEecCCce
Confidence 654111111111 111 3579999999999999999999988765333222211 112222234456
Q ss_pred eeCCCCeEEEEEEEEccC--CCeEEEEEC--CEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEE
Q psy16852 222 LVPKDSTVTLEAEYTGTP--TPEVKWFKN--GKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVT 297 (579)
Q Consensus 222 ~~~~g~~~~l~C~~~~~p--~~~v~W~~~--~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~ 297 (579)
.+.+|+.+.|.|.+.+.| .+.+.|+++ ++.+. +.+ .....+ +..
T Consensus 229 ~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~------------~~~-~~~~~~------------~~~------- 276 (438)
T 1qgc_4 229 LVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLE------------WVA-TISSGG------------TYT------- 276 (438)
T ss_dssp EECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEE------------EEE-EECTTS------------CCE-------
T ss_pred EEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcE------------EEE-EEeecC------------Cce-------
Confidence 688999999999999988 569999986 32211 000 000000 000
Q ss_pred EEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEE-CCCCeEEEEEcccCCCCC
Q psy16852 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQ-DTDGLCKLAISEVFPENA 376 (579)
Q Consensus 298 v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~ 376 (579)
.. .. ....++.+.. ...+...|.|.++..+|+
T Consensus 277 ---------~~----~~----------------------------------~~~~r~~~~~~~~~~~~~L~I~~v~~~D~ 309 (438)
T 1qgc_4 277 ---------YY----PD----------------------------------SVKGRFTISRDNAKNTLYLQMSSLRSADT 309 (438)
T ss_dssp ---------EC----CG----------------------------------GGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred ---------ec----Cc----------------------------------ccCCcEEEEeecCCCeEEEEECCCChhhC
Confidence 00 00 0000111111 123345899999999999
Q ss_pred EEEEEEEEcCce-----eEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEee-CCC-eEEEeeCCEEcC
Q psy16852 377 GLYSCTAVNPVG-----EAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP-SICWYRGKEEIL 449 (579)
Q Consensus 377 G~Y~C~a~n~~g-----~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~ 449 (579)
|.|+|.|.|..+ .......+.|... ...+|.+........+.+|+.++|.|.+.|. |.| .|.|+++|..+.
T Consensus 310 G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~--~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~ 387 (438)
T 1qgc_4 310 AMYYCVRREDGGDEGFAYWGQGTVVTVSAA--KTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSG 387 (438)
T ss_dssp CEEEEEECCSSSCCCCCSBCCCEEEEECSS--CCBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSS
T ss_pred EEEEEEEEccCCCccceeeCCCEEEEEecC--CCCCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCc
Confidence 999999998433 2223456666542 2235555433333456789999999999997 888 999999987763
Q ss_pred CCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEE
Q psy16852 450 PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTAT 529 (579)
Q Consensus 450 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 529 (579)
...... +. +.|.|.+. +.|+|.++..+| |.|+|.|.|..|.......
T Consensus 388 ~~~~~~----------------~~--~~g~~~~~--------------s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~ 434 (438)
T 1qgc_4 388 VHTFPA----------------VL--QSDLYTLS--------------SSVTVPSSTWPS-ETVTCNVAHPASSTKVDKK 434 (438)
T ss_dssp EEECCC----------------EE--ETTEEEEE--------------EEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEE
T ss_pred eeecCc----------------cc--cCCcEEEE--------------EEEEEehhhcCC-ceEEEEEEeCCCCcceeee
Confidence 211000 00 12455433 349999999999 9999999999998877666
Q ss_pred EE
Q psy16852 530 LS 531 (579)
Q Consensus 530 l~ 531 (579)
|.
T Consensus 435 i~ 436 (438)
T 1qgc_4 435 IV 436 (438)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 31
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=100.00 E-value=8.4e-36 Score=277.07 Aligned_cols=278 Identities=22% Similarity=0.345 Sum_probs=222.7
Q ss_pred cCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc---eEEeCCeEEEEEcccCCCCCeEEEEEEEc
Q psy16852 209 LEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVN 285 (579)
Q Consensus 209 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~---~~~~~~~~~l~i~~~~~~d~G~y~C~a~n 285 (579)
+.+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.... .........|.|.+++.+|+|.|+|.|.|
T Consensus 3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n 82 (284)
T 2rik_A 3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN 82 (284)
T ss_dssp CCCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred cCCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEE
Confidence 367888888888889999999999999999989999999999987654 23345678999999999999999999999
Q ss_pred CCeeeEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEE
Q psy16852 286 EAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCK 365 (579)
Q Consensus 286 ~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~ 365 (579)
..|.......+.|...+.....+.-... ........+.|.+.|.|.+.+.|++++..+........... .....
T Consensus 83 ~~g~~~~~~~l~V~~~p~~~~~~~~~~~-----v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~ 156 (284)
T 2rik_A 83 VAGKDSCSAQLGVQEPPRFIKKLEPSRI-----VKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFV-ESVAV 156 (284)
T ss_dssp TTEEEEEEEEEEEECCCEEEECCCSEEE-----EETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEE-TTEEE
T ss_pred CCceEEEEEEEEccCCCcccccCCCceE-----ecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEc-CCEEE
Confidence 9988776766666543321111110000 11112233568899999999999999999987766554332 34568
Q ss_pred EEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCC
Q psy16852 366 LAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGK 445 (579)
Q Consensus 366 l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~ 445 (579)
|.|.++..+|+|.|+|.|.|..|.....+.|.|.. +|.+...+....+..|+.++|.|.+.|.|.|.+.|++++
T Consensus 157 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~------~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~ 230 (284)
T 2rik_A 157 LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE------PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDK 230 (284)
T ss_dssp EEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC------CCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETT
T ss_pred EEECCCCcccCEEEEEEEEcCCCceeEEEEEEEec------CCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECC
Confidence 99999999999999999999999999999999986 677776667778899999999999999999999999999
Q ss_pred EEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEE
Q psy16852 446 EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525 (579)
Q Consensus 446 ~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 525 (579)
..+..+.++.+.. ++..+.|.|.++..+|+|.|+|.|.|..|...
T Consensus 231 ~~~~~~~~~~~~~-----------------------------------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~ 275 (284)
T 2rik_A 231 RELRSGKKYKIMS-----------------------------------ENFLTSIHILNVDSADIGEYQCKASNDVGSYT 275 (284)
T ss_dssp EEECBTTTEEEEE-----------------------------------ETTEEEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred EECcCCCCEEEEE-----------------------------------cCCEEEEEEcCCCcccCEEEEEEEEeCCCcee
Confidence 9987666554422 34456699999999999999999999999999
Q ss_pred EEEEEEEe
Q psy16852 526 CTATLSLL 533 (579)
Q Consensus 526 ~~~~l~v~ 533 (579)
.++.|.|+
T Consensus 276 ~~~~l~V~ 283 (284)
T 2rik_A 276 CVGSITLK 283 (284)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEc
Confidence 99999874
No 32
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=100.00 E-value=1.6e-38 Score=306.11 Aligned_cols=318 Identities=14% Similarity=0.159 Sum_probs=228.8
Q ss_pred eEEccCCcEEEEEEEEeecCCeEEEEECCEEccC------------CCCceEEEcC---CCCeEEEEECcCCCCCCeEEE
Q psy16852 115 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILP------------DNGHTMEFNP---TTGECVLSISEATPQDEAVYS 179 (579)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~------------~~~~~~~~~~---~~~~~~l~i~~~~~~d~G~Y~ 179 (579)
+.+.+|+.++|.|.+.+.|.+.|.|++++..+.. ....++.... ..+...|.|.+++.+|+|.|+
T Consensus 4 v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 83 (363)
T 1wio_A 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI 83 (363)
T ss_dssp EEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEEE
T ss_pred EEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEEE
Confidence 5678999999999998889999999999753211 1111222111 224567999999999999999
Q ss_pred EEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEE
Q psy16852 180 VKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIET 259 (579)
Q Consensus 180 C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~ 259 (579)
|.+.+..+ ...+.|.. +...+ ...+.+|+.+.|.|.+.+.|.+.+.|++++..+.
T Consensus 84 C~~~n~~~----~~~l~V~~--------------~~~~~-~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~------ 138 (363)
T 1wio_A 84 CEVEDQKE----EVQLLVFG--------------LTANS-DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI------ 138 (363)
T ss_dssp EEETTEEE----EEEEEEEE--------------EEESS-CSSEESBSCEEEEEECCTTCCCCEEEECSSSCEE------
T ss_pred EEEEECCC----cEEEEEEe--------------CCCCC-ceEEecCCCEEEEEEcCCCCCCeEEEEcCCCccc------
Confidence 99987643 33444431 01111 1246789999999999999999999999876542
Q ss_pred eCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEee-----e
Q psy16852 260 KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTG-----K 334 (579)
Q Consensus 260 ~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g-----~ 334 (579)
.....|.|.++..+|+|.|+|.|.|..+.......+.|...+... -...+..+. ...+.|.+.| .
T Consensus 139 -~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~~--~~~~~~~G~-------~v~l~C~~~~~~~~~~ 208 (363)
T 1wio_A 139 -QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS--SIVYKKEGE-------QVEFSFPLAFTVEKLT 208 (363)
T ss_dssp -EESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSCSE--EEEEEETBC-------CEEEECCCCCCCCSSC
T ss_pred -ccceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCCC--CceEEecCC-------EEEEEEEEecccccCC
Confidence 233579999999999999999999987766665565555222211 001111111 1223455555 7
Q ss_pred CCCeEEEEECCEEccC--------CCeEEEEE---------CCCCeEEEEEcccCCCCCEEEEEEEEcC--ceeEEEEEE
Q psy16852 335 PTPLVTWSHDGTPMKE--------GKEVTIYQ---------DTDGLCKLAISEVFPENAGLYSCTAVNP--VGEAVAAAT 395 (579)
Q Consensus 335 p~~~i~W~~~~~~~~~--------~~~~~~~~---------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~--~g~~~~~~~ 395 (579)
|.+.+.|+++|..+.. +..+.+.. ...+...|.|.++..+|+|.|+|.|.|. .|.....+.
T Consensus 209 P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~ 288 (363)
T 1wio_A 209 GSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVN 288 (363)
T ss_dssp EEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEE
T ss_pred CceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEe
Confidence 8899999999988766 34443322 1233458999999999999999999999 998888888
Q ss_pred EEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCe--EEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEcccc
Q psy16852 396 LAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPS--ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEAT 473 (579)
Q Consensus 396 l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~--v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~ 473 (579)
|.|... .|+.++|.|.+.|.|+|. +.|++++..+..+
T Consensus 289 l~V~~v-------------------~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~~---------------------- 327 (363)
T 1wio_A 289 LVVMRA-------------------TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVS---------------------- 327 (363)
T ss_dssp EEEEEE-------------------CCCSSSEEEEEESSCCTTCCEEEECSSSSCSEE----------------------
T ss_pred EEEEEe-------------------cCCCeeEEEEEccccCCCccEEEEeCCCceeee----------------------
Confidence 888631 188999999999999997 9999998766321
Q ss_pred CCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 474 PQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 474 ~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
..|.|.++..+|+|.|+|.|.|. |....+..|+|.
T Consensus 328 ------------------------~~l~i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~~V~ 362 (363)
T 1wio_A 328 ------------------------KREKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKVL 362 (363)
T ss_dssp ------------------------ESSSEEEESSCCSEEEEEEECSS-SSCCEEEEEEEC
T ss_pred ------------------------eeeeeeeeccccceeEEEEEecC-CeEEEecceEec
Confidence 12677889999999999999964 677777777764
No 33
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=100.00 E-value=2.9e-39 Score=311.25 Aligned_cols=312 Identities=15% Similarity=0.191 Sum_probs=228.0
Q ss_pred ceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecC--------------CCCEEEEE---eCCEEEEEEcCCCCCCCEEE
Q psy16852 15 PVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA--------------TEHYLITT---VESVSTLEIINPTKEDIGVY 77 (579)
Q Consensus 15 ~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~--------------~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y 77 (579)
.+.+.+|++++|.|.+.+.|.+.+.|+|++..+.. ..++.... ..+...|.|.+++.+|+|.|
T Consensus 3 ~v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 82 (363)
T 1wio_A 3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 82 (363)
T ss_dssp EEEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEE
T ss_pred eEEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEE
Confidence 46789999999999998888889999999864211 11221111 22456799999999999999
Q ss_pred EEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEc
Q psy16852 78 TCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFN 157 (579)
Q Consensus 78 ~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~ 157 (579)
+|.+.|.. ..+.|.|.... ..+ ...+.+|+.++|.|.+.+.|.+.+.|++++..+. .
T Consensus 83 ~C~~~n~~----~~~~l~V~~~~---------~~~-~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~-------~-- 139 (363)
T 1wio_A 83 ICEVEDQK----EEVQLLVFGLT---------ANS-DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI-------Q-- 139 (363)
T ss_dssp EEEETTEE----EEEEEEEEEEE---------ESS-CSSEESBSCEEEEEECCTTCCCCEEEECSSSCEE-------E--
T ss_pred EEEEEECC----CcEEEEEEeCC---------CCC-ceEEecCCCEEEEEEcCCCCCCeEEEEcCCCccc-------c--
Confidence 99998753 35566665321 111 1246789999999999888899999999875431 1
Q ss_pred CCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc
Q psy16852 158 PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG 237 (579)
Q Consensus 158 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~ 237 (579)
....|.|.++..+|+|.|+|.+.+..+.......+.+. .+|.. +....+.+|+.+.|.|.+.+
T Consensus 140 ---~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~-----------~~p~~---~~~~~~~~G~~v~l~C~~~~ 202 (363)
T 1wio_A 140 ---GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL-----------AFQKA---SSIVYKKEGEQVEFSFPLAF 202 (363)
T ss_dssp ---ESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEE-----------CCSCS---EEEEEEETBCCEEEECCCCC
T ss_pred ---cceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEe-----------cCCCC---CCceEEecCCEEEEEEEEec
Confidence 12479999999999999999999876655544444433 22221 13456788999999998877
Q ss_pred -----cCCCeEEEEECCEEeccC--------c-eEE------------eCCeEEEEEcccCCCCCeEEEEEEEcC--Cee
Q psy16852 238 -----TPTPEVKWFKNGKEIVSK--------D-IET------------KDNVTKLVIKQTTKKTTGKYEIRVVNE--AGE 289 (579)
Q Consensus 238 -----~p~~~v~W~~~~~~i~~~--------~-~~~------------~~~~~~l~i~~~~~~d~G~y~C~a~n~--~g~ 289 (579)
.|.+.+.|+++|..+... . ... ......|.|.++..+|+|.|+|.|.|. .|.
T Consensus 203 ~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~ 282 (363)
T 1wio_A 203 TVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGK 282 (363)
T ss_dssp CCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCC
T ss_pred ccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCe
Confidence 678899999999877652 1 111 122348999999999999999999999 888
Q ss_pred eEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCe--EEEEECCEEccCCCeEEEEECCCCeEEEE
Q psy16852 290 ARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPL--VTWSHDGTPMKEGKEVTIYQDTDGLCKLA 367 (579)
Q Consensus 290 ~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~--i~W~~~~~~~~~~~~~~~~~~~~~~~~l~ 367 (579)
......+.|....+..+.| .|.+.|.|++. +.|++++..+..+ ..|.
T Consensus 283 ~~~~~~l~V~~v~g~~~~l-------------------~C~~~g~p~p~~~i~W~~~~~~~~~~------------~~l~ 331 (363)
T 1wio_A 283 LHQEVNLVVMRATQLQKNL-------------------TCEVWGPTSPKLMLSLKLENKEAKVS------------KREK 331 (363)
T ss_dssp EEEEEEEEEEEECCCSSSE-------------------EEEEESSCCTTCCEEEECSSSSCSEE------------ESSS
T ss_pred EEEEEeEEEEEecCCCeeE-------------------EEEEccccCCCccEEEEeCCCceeee------------eeee
Confidence 7777777776333333333 45677888877 9999999877632 1477
Q ss_pred EcccCCCCCEEEEEEEEcCceeEEEEEEEEE
Q psy16852 368 ISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398 (579)
Q Consensus 368 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 398 (579)
|.++..+|+|.|+|.|.|. |....+..+.|
T Consensus 332 i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~~V 361 (363)
T 1wio_A 332 AVWVLNPEAGMWQCLLSDS-GQVLLESNIKV 361 (363)
T ss_dssp EEEESSCCSEEEEEEECSS-SSCCEEEEEEE
T ss_pred eeeeccccceeEEEEEecC-CeEEEecceEe
Confidence 8899999999999999975 44555555555
No 34
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.7e-36 Score=284.46 Aligned_cols=281 Identities=23% Similarity=0.375 Sum_probs=215.0
Q ss_pred CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEE-eC-CEEEEEEcCCCC-CCCEEEEEE
Q psy16852 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITT-VE-SVSTLEIINPTK-EDIGVYTCK 80 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~-~~-~~~~L~i~~~~~-~d~G~Y~C~ 80 (579)
..||.|...|.++.+.+|+.++|.|.+.|.|.+.|.|+++|..+... ++.... .. ....|.|.+++. +|+|.|+|.
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~-~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~ 82 (304)
T 2yd9_A 4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDESAGAVLRIQPLRTPRDENVYECV 82 (304)
T ss_dssp CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CT-TEEEEEETTTTEEEEEECSCCTTTTCSEEEEE
T ss_pred ccCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCC-ceEEEEecCCCceEEEEecccccCCCeEEEEE
Confidence 46899999999999999999999999999999999999999988544 444333 22 358899999998 999999999
Q ss_pred EEcCCeeeEEEEEEEEEecccCC-CCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCC-ceEEEcC
Q psy16852 81 ATNIGGVATCSANLIVLEKEESG-EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNG-HTMEFNP 158 (579)
Q Consensus 81 ~~~~~g~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~-~~~~~~~ 158 (579)
+.|..|.....+.|.|...+..+ ..|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..... ..+....
T Consensus 83 a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~ 162 (304)
T 2yd9_A 83 AQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLR 162 (304)
T ss_dssp EECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEECT
T ss_pred EECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeCC
Confidence 99999988788888888664321 235666667778889999999999999999999999999998765422 2232221
Q ss_pred CCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEE-EEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc
Q psy16852 159 TTGECVLSISEATPQDEAVYSVKAVNTFGRAECR-ANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG 237 (579)
Q Consensus 159 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~ 237 (579)
. ..|.|.+++.+|+|.|+|.+.|..|..... ..+.+.. ...+|.+...+....+.+|+.+.|.|.+.|
T Consensus 163 -~--~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~--------~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g 231 (304)
T 2yd9_A 163 -S--GALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRV--------QNVAPRFSILPMSHEIMPGGNVNITCVAVG 231 (304)
T ss_dssp -T--SCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--------CCEEEEEEECCCCBCCCTTCCEEEEEEEEE
T ss_pred -C--eEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEe--------eccCCcEEecCCceEEcCCCeEEEEEEEee
Confidence 2 379999999999999999999998866533 4444431 123566666666677889999999999999
Q ss_pred cCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 238 TPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299 (579)
Q Consensus 238 ~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~ 299 (579)
.|.+.+.|+++|..+..... .......|.+.++ +|+|.|+|.|.|..|....++.|.|.
T Consensus 232 ~p~p~v~W~~~~~~l~~~~~-~~~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~ 290 (304)
T 2yd9_A 232 SPMPYVKWMQGAEDLTPEDD-MPVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVK 290 (304)
T ss_dssp ESCCEEEEEETTEECSCSSS-CCBSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC--
T ss_pred eCCCEEEEEECCEECCCccc-ccCCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEe
Confidence 99999999999999876542 2234456777766 69999999999999998877777665
No 35
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=100.00 E-value=5.1e-35 Score=272.91 Aligned_cols=276 Identities=19% Similarity=0.288 Sum_probs=215.2
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeC-CCeeEEEE-CCEEecCC-CCEEEEE-eCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHP-LPTMTWQK-DGTELHAT-EHYLITT-VESVSTLEIINPTKEDIGVYTCKA 81 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~-~~~v~W~~-~g~~~~~~-~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (579)
||.|...|.+..+.+|+.++|.|.+.+.+ .+.+.|++ +|..+... .++.... ......|.|.+++.+|+|.|+|.+
T Consensus 2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~ 81 (291)
T 1qz1_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81 (291)
T ss_dssp CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEE
Confidence 78899999999999999999999998876 57999999 88877643 3444332 346789999999999999999999
Q ss_pred EcCCe-eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCC
Q psy16852 82 TNIGG-VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160 (579)
Q Consensus 82 ~~~~g-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~ 160 (579)
.|..| .....+.+.|.. +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.......+.....
T Consensus 82 ~n~~g~~~~~~~~l~v~~------~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~- 154 (291)
T 1qz1_A 82 TAEDGTQSEATVNVKIFQ------KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN- 154 (291)
T ss_dssp ECTTSCEEEEEEEEEEEC------CSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTT-
T ss_pred EcCCCCeeEEEEEEEeec------cccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccC-
Confidence 99875 344566666653 4456666677888999999999999999999999999998876554444443322
Q ss_pred CeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccC--CceeeCCCCeEEEEEEEEcc
Q psy16852 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPL--QALLVPKDSTVTLEAEYTGT 238 (579)
Q Consensus 161 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~--~~~~~~~g~~~~l~C~~~~~ 238 (579)
..|.|.++..+|+|.|+|.+.|..+.......+.+.. ..+|.+.... ....+.+|+.+.|.|.+.+.
T Consensus 155 --~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v---------~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~ 223 (291)
T 1qz1_A 155 --NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV---------NVPPTVQARQSIVNATANLGQSVTLVCDADGF 223 (291)
T ss_dssp --SCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEE---------EEEEEEEESCSEEEEETTSCCCEEEEEEEEEE
T ss_pred --CcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEE---------ecCCcccccccccccccccCceEEEEEEEEEe
Confidence 3699999999999999999998764433333333321 1344444332 24467889999999999999
Q ss_pred CCCeEEEEECCEEeccCc-----eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 239 PTPEVKWFKNGKEIVSKD-----IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299 (579)
Q Consensus 239 p~~~v~W~~~~~~i~~~~-----~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~ 299 (579)
|.+.+.|+++|..+.... .........|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 224 p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 289 (291)
T 1qz1_A 224 PEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289 (291)
T ss_dssp SCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEE
Confidence 999999999999887653 3334455789999999999999999999999998877777764
No 36
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-35 Score=275.43 Aligned_cols=278 Identities=22% Similarity=0.387 Sum_probs=216.3
Q ss_pred CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE-CCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK-DGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
.+|.|...|.++.+.+|+.++|.|.+.+.|. .+.|++ +|..+....++.....+....|.|.+++.+|+|.|+|.+.|
T Consensus 3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n 81 (291)
T 2wim_A 3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD 81 (291)
T ss_dssp CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEec
Confidence 4788999999999999999999999998775 899999 78888777788877777788999999999999999999999
Q ss_pred CCeee-EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCe
Q psy16852 84 IGGVA-TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 162 (579)
Q Consensus 84 ~~g~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~ 162 (579)
..|.. ...+.+.|.. ++.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.............
T Consensus 82 ~~g~~~~~~~~l~v~~------~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--- 152 (291)
T 2wim_A 82 AKGQTQEATVVLEIYQ------KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN--- 152 (291)
T ss_dssp SSSCEEEEEEEEEEEC------CCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTT---
T ss_pred ccCceEEEEEEEEecC------CcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccC---
Confidence 88765 3456666653 3445555667788999999999999999999999999998876544444443322
Q ss_pred EEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCC--ceeeCCCCeEEEEEEEEccCC
Q psy16852 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ--ALLVPKDSTVTLEAEYTGTPT 240 (579)
Q Consensus 163 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~p~ 240 (579)
..|.|.++..+|+|.|+|.+.+..+.......+.+.. ..+|.+..... ...+.+|+.+.|.|.+.+.|.
T Consensus 153 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v---------~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~ 223 (291)
T 2wim_A 153 NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV---------NVPPAISMPQKSFNATAERGEEMTFSCRASGSPE 223 (291)
T ss_dssp SCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEE---------EBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSC
T ss_pred CCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEe---------ccCCccccCcccccceecCCCeEEEEEEeecCCC
Confidence 3599999999999999999998875443333333321 13444433332 345778999999999999999
Q ss_pred CeEEEEECCEEeccCc-eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEec
Q psy16852 241 PEVKWFKNGKEIVSKD-IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA 301 (579)
Q Consensus 241 ~~v~W~~~~~~i~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~ 301 (579)
+.+.|+++|..+.... .........|.|.++..+|+|.|+|.|.|..|....++.+.|...
T Consensus 224 p~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~ 285 (291)
T 2wim_A 224 PAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 285 (291)
T ss_dssp CEEEEEETTEECCCTTTEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC---
T ss_pred CeEEEEECCEECcCCccEEEcCCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEe
Confidence 9999999999987654 333445578999999999999999999999999988888776543
No 37
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=100.00 E-value=2.9e-35 Score=285.21 Aligned_cols=307 Identities=19% Similarity=0.312 Sum_probs=209.6
Q ss_pred CeEeccCCceee---CCCCeEEEEEEEEccCCCeEEEEECCEEeccCc---eEEeCCeEEEEEccc-CCCCCeEEEEEEE
Q psy16852 212 PTIVRPLQALLV---PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQT-TKKTTGKYEIRVV 284 (579)
Q Consensus 212 p~~~~~~~~~~~---~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~---~~~~~~~~~l~i~~~-~~~d~G~y~C~a~ 284 (579)
|.+...+....+ .+|+.+.|.|.+.|.|.+.+.|+++|..+.... ..... ..|.|.+. ..+|+|.|+|.|.
T Consensus 6 P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~--g~l~i~~~~~~~D~G~Y~C~A~ 83 (384)
T 3kld_A 6 PVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD--GSLLINNPNKTQDAGTYQCIAT 83 (384)
T ss_dssp EEEEECCCCEEEETTCSCSEEEECCEEEEESCCEEEEEETTEECCC----CEEEET--TEEEEESCCHHHHCEEEEEEEE
T ss_pred CEEEeCCcceEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECcCCCCccEEEEC--CEEEEcCCCCcccCEEEEEEEE
Confidence 344444444433 578999999999999999999999999986542 22222 24666555 7789999999999
Q ss_pred cCCeeeE-EEEEEEEEeccceeeee--eeeeeccccCceeeeecCeeEEE-eeeCCCeEEEEECCEEccCCCeEEEEECC
Q psy16852 285 NEAGEAR-TSGSVTITVAEAETVMM--DVRVESHPTASFQWFIHSEPVVV-TGKPTPLVTWSHDGTPMKEGKEVTIYQDT 360 (579)
Q Consensus 285 n~~g~~~-~~~~~~v~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~-~g~p~~~i~W~~~~~~~~~~~~~~~~~~~ 360 (579)
|..|... ....+.+...+...... ...+..+. ...+.|.. .+.|.+.+.|++++.++....+.... ..
T Consensus 84 N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~-------~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~-~~ 155 (384)
T 3kld_A 84 NSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQ-------GMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVS-QE 155 (384)
T ss_dssp ETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETC-------CEEECCCCCSEESCEEEEEEETTEECCCSSSEEEC-TT
T ss_pred cCcccEEecceEEEEecccccccCCCCceeEEcCC-------CeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEE-cC
Confidence 9998753 23444443221110000 00111111 11123432 35677899999999987655443332 22
Q ss_pred CCeEEEEEcccCCCCCEEEEEEEEcCceeEEE---EEEEEEEec-ccCCCCCeee-cCCCceeeecCCCeEEEEEEEeeC
Q psy16852 361 DGLCKLAISEVFPENAGLYSCTAVNPVGEAVA---AATLAVEEK-EESGEAPKFT-KPLKPVIAEAQSPATLKATVTGRP 435 (579)
Q Consensus 361 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~---~~~l~v~~~-~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~g~p 435 (579)
.+ .|.|.++..+|+|.|+|.|.|..+.... ...+.+... .....+|.+. ..+....+.+|+.+.|.|.+.|.|
T Consensus 156 ~~--~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P 233 (384)
T 3kld_A 156 TG--NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNP 233 (384)
T ss_dssp TC--CEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEES
T ss_pred CC--cEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecC
Confidence 22 6999999999999999999998775432 122222210 0001123332 234556788999999999999999
Q ss_pred CCeEEEeeCCE-EcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEE
Q psy16852 436 TPSICWYRGKE-EILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVT 514 (579)
Q Consensus 436 ~~~v~W~~~~~-~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 514 (579)
.|.+.|++++. .+.... .. ....+.|.|.+++.+|+|.|+
T Consensus 234 ~p~i~W~k~~~~~~~~~~--~~-------------------------------------~~~~~~L~I~~v~~~D~G~Y~ 274 (384)
T 3kld_A 234 VPTILWRRADGKPIARKA--RR-------------------------------------HKSNGILEIPNFQQEDAGSYE 274 (384)
T ss_dssp CCEEEEEETTCCCCCTTC--EE-------------------------------------CTTSCEEEECSCCGGGCEEEE
T ss_pred CCcEEEEeCCCccccccc--ee-------------------------------------cCCCcEEEECCCChhhCEEEE
Confidence 99999999543 442211 00 112345999999999999999
Q ss_pred EEEEeCCeeEEEEEEEEEeeCCcccccccCCccccCCCceEEecCCcEEEEEEeccceeecccc
Q psy16852 515 CRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEIPL 578 (579)
Q Consensus 515 C~a~n~~g~~~~~~~l~v~~~~~~~~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~ 578 (579)
|.|.|..|.....+.|.|. .+|.+...+....+..|++++|.|.+.++|.+.|.|
T Consensus 275 C~a~N~~G~~~~~~~l~v~---------~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W 329 (384)
T 3kld_A 275 CVAENSRGKNVAKGQLTFY---------AQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRW 329 (384)
T ss_dssp EEEEETTEEEEEEEEEEEE---------EEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEE
T ss_pred EEEEcCCCeEEEEEEEEEe---------cCCccccCCCceEecCCCCEEEEeECCccCCCeEEE
Confidence 9999999999999999875 678888888889999999999999999999999887
No 38
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=100.00 E-value=5.5e-36 Score=283.25 Aligned_cols=289 Identities=20% Similarity=0.298 Sum_probs=214.3
Q ss_pred CCcCCCCccccccCceeeeCCCCEEEEEEEEee-CCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEE
Q psy16852 1 MAEVLAPRFIEKIQPVVSHQEQPALFTCKVEGH-PLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTC 79 (579)
Q Consensus 1 ~~~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~-~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 79 (579)
|.++.+|.|..++ ++.+.+|+.++|.|.+.+. |.+.+.|+++|..+....++... .+...|.|.+++.+|+|.|+|
T Consensus 2 i~~~~~P~~~~~~-~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C 78 (317)
T 2y25_A 2 IDPFTGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEV 78 (317)
T ss_dssp CCSSSCCEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-------CCEEEEETTCCSTTCSCEEE
T ss_pred CCccCCCcEeeee-eEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEE--CCeEEEEEccCCcccCeEEEE
Confidence 5678899998655 6999999999999999887 67899999999999876665443 445899999999999999999
Q ss_pred EEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEe----------ecCCeEEEEECCEEccCC
Q psy16852 80 KATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG----------RPTPSICWYRGKEEILPD 149 (579)
Q Consensus 80 ~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~----------~p~~~i~W~~~~~~~~~~ 149 (579)
.+.|..|.....+.+.|... +.+...+....+.+|+.+.|.|.+.+ .|.+.+.|++++..+...
T Consensus 79 ~~~n~~g~~~~~~~l~v~~~------~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~ 152 (317)
T 2y25_A 79 ILKDDRGKDKSRLKLVDEAF------KELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS 152 (317)
T ss_dssp EEESSSCEEEEEECCSTHHH------HHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCC
T ss_pred EEECCCCcEEEEEEEEEecC------ccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCC
Confidence 99998887766555544321 11222222334456777777777655 688999999999988766
Q ss_pred CCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccc---------cCCCCccCCCeEec-cCC
Q psy16852 150 NGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATT---------IDKPRVLEAPTIVR-PLQ 219 (579)
Q Consensus 150 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~---------~~~~~~~~~p~~~~-~~~ 219 (579)
.+..... ..+...|.|.+++.+|+|.|+|.+.|..|....+..+.+..... .........|.+.. .+.
T Consensus 153 ~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 230 (317)
T 2y25_A 153 DRVKTGV--TGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPD 230 (317)
T ss_dssp SSEEEEE--CSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCS
T ss_pred CCeEEec--cCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCc
Confidence 5544443 34567899999999999999999999988777666555431000 00000112333433 344
Q ss_pred ceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCce-EEe---CCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEE
Q psy16852 220 ALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDI-ETK---DNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGS 295 (579)
Q Consensus 220 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~-~~~---~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~ 295 (579)
...+.+|+.+.|.|.+.|.|.+.+.|+++|..+..... ... .....|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus 231 ~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~ 310 (317)
T 2y25_A 231 VVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFT 310 (317)
T ss_dssp EEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEE
T ss_pred cEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEE
Confidence 56788999999999999999999999999999876542 222 34568999999999999999999999999888888
Q ss_pred EEEEe
Q psy16852 296 VTITV 300 (579)
Q Consensus 296 ~~v~~ 300 (579)
+.|.+
T Consensus 311 l~V~~ 315 (317)
T 2y25_A 311 VSVFI 315 (317)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 77764
No 39
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=100.00 E-value=1e-34 Score=287.55 Aligned_cols=372 Identities=16% Similarity=0.197 Sum_probs=234.4
Q ss_pred ccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEEC--CEEec-----------------CCCCEEEEEe--CCEEEEEE
Q psy16852 10 IEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKD--GTELH-----------------ATEHYLITTV--ESVSTLEI 66 (579)
Q Consensus 10 ~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~--g~~~~-----------------~~~~~~~~~~--~~~~~L~i 66 (579)
+..|.++.+.+|++++|.|.+.+.+ .+.+.|||+ |..+. ...++.+... .+..+|.|
T Consensus 4 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (444)
T 1igt_B 4 LQESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQM 83 (444)
T ss_dssp EEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEE
T ss_pred EecCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEE
Confidence 4467788999999999999998764 468999985 32210 1245655443 34689999
Q ss_pred cCCCCCCCEEEEEEEEcCCee---eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cCC-eEEEEE
Q psy16852 67 INPTKEDIGVYTCKATNIGGV---ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP-SICWYR 141 (579)
Q Consensus 67 ~~~~~~d~G~Y~C~~~~~~g~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~ 141 (579)
.+++.+|+|.|+|.+.+..+. ....+.+.|.... ..+|.+........+.+|+.++|.|.+.+. |.+ .|.|++
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~ 161 (444)
T 1igt_B 84 SRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAK--TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNS 161 (444)
T ss_dssp CSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCC--CBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGG
T ss_pred CCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCC--CCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEec
Confidence 999999999999999987543 2233566665321 123333322222234789999999999886 666 999999
Q ss_pred CCEEccCCCCceEEEc-CCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeecc-------ccCCCCccCCCe
Q psy16852 142 GKEEILPDNGHTMEFN-PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKAT-------TIDKPRVLEAPT 213 (579)
Q Consensus 142 ~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~~~~p~ 213 (579)
++..+........... .....+.|.|.++..+| |.|+|.|.|..+.......+.+.... ......+..+|.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~ 240 (444)
T 1igt_B 162 GSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPS 240 (444)
T ss_dssp GTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCE
T ss_pred CCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCce
Confidence 8775311000001110 00012469999999999 99999999998876444433221000 000001223455
Q ss_pred E-eccCCcee-eCCCCeEEEEEEEEccC---C-CeEEEEECCEEeccCc----eEEe----CCeEEEEEcccCCCCCeEE
Q psy16852 214 I-VRPLQALL-VPKDSTVTLEAEYTGTP---T-PEVKWFKNGKEIVSKD----IETK----DNVTKLVIKQTTKKTTGKY 279 (579)
Q Consensus 214 ~-~~~~~~~~-~~~g~~~~l~C~~~~~p---~-~~v~W~~~~~~i~~~~----~~~~----~~~~~l~i~~~~~~d~G~y 279 (579)
+ ..++.... +.+|+.+.|.|.+.+.+ + +.+.|++++..+.... .... ...+.|.|.++..+|+|.|
T Consensus 241 v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y 320 (444)
T 1igt_B 241 VFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEF 320 (444)
T ss_dssp EEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEE
T ss_pred EEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcE
Confidence 4 33333333 58899999999999874 3 5999999998876432 1111 2346899999999999999
Q ss_pred EEEEEcCCeeeEEEEEEEE--EeccceeeeeeeeeeccccCceeeeecCeeEEEeee-CCC-eEEEEECCEEccCCCeEE
Q psy16852 280 EIRVVNEAGEARTSGSVTI--TVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGK-PTP-LVTWSHDGTPMKEGKEVT 355 (579)
Q Consensus 280 ~C~a~n~~g~~~~~~~~~v--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~-p~~-~i~W~~~~~~~~~~~~~~ 355 (579)
+|.|.|..+.......+.+ .+...+.+.+... ....+......+.|.+.|. |.+ .++|+++|..+.......
T Consensus 321 ~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~----~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~ 396 (444)
T 1igt_B 321 KCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPP----PEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTE 396 (444)
T ss_dssp EEEEECTTCSSCEEEEEECCCCCCBCCEEEEECC----CGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECC
T ss_pred EEEEEcCCCCCceEEEEeccCCCCCCCEEEEeCC----ChHHccCCeEEEEEEEEeeeCCCCEEEEEECCEEcccccccc
Confidence 9999999886633333322 2233333332211 1111111124567999985 555 999999999884322222
Q ss_pred EEECCCCe----EEEEEcccCCCCCEEEEEEEEcCce
Q psy16852 356 IYQDTDGL----CKLAISEVFPENAGLYSCTAVNPVG 388 (579)
Q Consensus 356 ~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g 388 (579)
.....+++ +.|.|.....+|.|.|+|.|.|...
T Consensus 397 ~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~l 433 (444)
T 1igt_B 397 PVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGL 433 (444)
T ss_dssp CEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred ceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCCc
Confidence 22233332 3567777777789999999999753
No 40
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=263.89 Aligned_cols=281 Identities=24% Similarity=0.383 Sum_probs=194.3
Q ss_pred CCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCC-CCCeEEEEEE
Q psy16852 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATP-QDEAVYSVKA 182 (579)
Q Consensus 104 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~~ 182 (579)
.+|.+...+....+.+|+.+.|.|.+.|.|.+.|.|++++..+... +........+....|.|.++.. +|+|.|+|.+
T Consensus 5 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~-~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a 83 (304)
T 2yd9_A 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDESAGAVLRIQPLRTPRDENVYECVA 83 (304)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CT-TEEEEEETTTTEEEEEECSCCTTTTCSEEEEEE
T ss_pred cCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCC-ceEEEEecCCCceEEEEecccccCCCeEEEEEE
Confidence 5778888888899999999999999999999999999999887543 3333332333457899999998 9999999999
Q ss_pred EcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc---eEE
Q psy16852 183 VNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IET 259 (579)
Q Consensus 183 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~---~~~ 259 (579)
.|..|.......+.|...... ....|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.... ...
T Consensus 84 ~n~~g~~~~~~~l~V~~~~~~----p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~ 159 (304)
T 2yd9_A 84 QNSVGEITVHAKLTVLREDQL----PSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIK 159 (304)
T ss_dssp ECSSCEECCEEEEEEECGGGC----CTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEE
T ss_pred ECCCCeEEEEEEEEEeccccC----CCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEE
Confidence 999888666667766532110 0122666666677778899999999999999999999999998876532 111
Q ss_pred eCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeE
Q psy16852 260 KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLV 339 (579)
Q Consensus 260 ~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i 339 (579)
......|.|.++..+|+|.|+|.|.|..|.
T Consensus 160 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-------------------------------------------------- 189 (304)
T 2yd9_A 160 QLRSGALQIESSEETDQGKYECVATNSAGV-------------------------------------------------- 189 (304)
T ss_dssp ECTTSCEEECSCCGGGCEEEEEEEEETTEE--------------------------------------------------
T ss_pred eCCCeEEEEccCCcccCEEEEEEEEeCCCC--------------------------------------------------
Confidence 112225666666666666666666655543
Q ss_pred EEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEE-EEEEEEecccCCCCCeeecCCCcee
Q psy16852 340 TWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAA-ATLAVEEKEESGEAPKFTKPLKPVI 418 (579)
Q Consensus 340 ~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~~~~~~~p~~~~~~~~~~ 418 (579)
.... ..+.|.... .+|.+...+....
T Consensus 190 --------------------------------------------------~~~~~~~l~v~~~~---~~P~~~~~~~~~~ 216 (304)
T 2yd9_A 190 --------------------------------------------------RYSSPANLYVRVQN---VAPRFSILPMSHE 216 (304)
T ss_dssp --------------------------------------------------EECCCEEEEEECCC---EEEEEEECCCCBC
T ss_pred --------------------------------------------------EEeccEEEEEEeec---cCCcEEecCCceE
Confidence 2211 122221100 1444444445566
Q ss_pred eecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCee
Q psy16852 419 AEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRS 498 (579)
Q Consensus 419 ~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~ 498 (579)
+.+|+.++|.|.+.|.|.|.+.|+++|..+....+.. ....
T Consensus 217 v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~---------------------------------------~~~~ 257 (304)
T 2yd9_A 217 IMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMP---------------------------------------VGRN 257 (304)
T ss_dssp CCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSCC---------------------------------------BSEE
T ss_pred EcCCCeEEEEEEEeeeCCCEEEEEECCEECCCccccc---------------------------------------CCcE
Confidence 8899999999999999999999999999886543211 1123
Q ss_pred EEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 499 VLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 499 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.|.|.++ +|+|.|+|.|.|..|....++.|.|.
T Consensus 258 ~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~ 290 (304)
T 2yd9_A 258 VLELTDV--KDSANYTCVAMSSLGVIEAVAQITVK 290 (304)
T ss_dssp EEEECSC--CSCEEEEEEEEETTEEEEEEEEEC--
T ss_pred EEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEe
Confidence 3666655 58999999999999999999999976
No 41
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=100.00 E-value=6.3e-34 Score=269.10 Aligned_cols=279 Identities=20% Similarity=0.315 Sum_probs=213.6
Q ss_pred cCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCCeEEEEECCEEeccCc-eEEeCCeEEEEEcccCCCCCeEEEEEEEcC
Q psy16852 209 LEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTPEVKWFKNGKEIVSKD-IETKDNVTKLVIKQTTKKTTGKYEIRVVNE 286 (579)
Q Consensus 209 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~i~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~ 286 (579)
..+|.+..+. ...+.+|+.+.|.|.+.+. |.+.+.|+++|..+.... .........|.|.+++.+|+|.|+|.|.|.
T Consensus 5 ~~~P~~~~~~-~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~ 83 (317)
T 2y25_A 5 FTGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDD 83 (317)
T ss_dssp SSCCEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESS
T ss_pred cCCCcEeeee-eEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECC
Confidence 3567776544 4778999999999999887 778999999999987544 333455579999999999999999999999
Q ss_pred CeeeEEEEEEEEE-------------eccceeeeeeeeeeccccCceeeeecCeeEEEee-eCCCeEEEEECCEEccCCC
Q psy16852 287 AGEARTSGSVTIT-------------VAEAETVMMDVRVESHPTASFQWFIHSEPVVVTG-KPTPLVTWSHDGTPMKEGK 352 (579)
Q Consensus 287 ~g~~~~~~~~~v~-------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g-~p~~~i~W~~~~~~~~~~~ 352 (579)
.|.......+.|. +..+..+.+.|..... .+.|.+.+ .|.+.+.|++++..+....
T Consensus 84 ~g~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~----------~l~c~~~~~~p~~~i~W~~~~~~~~~~~ 153 (317)
T 2y25_A 84 RGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGI----------QLYSFVTYYVEDLKVNWSHNGSAIRYSD 153 (317)
T ss_dssp SCEEEEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEE----------EEEEEBSSCCSSCEEEEEESSSBCCCCS
T ss_pred CCcEEEEEEEEEecCccccccCCceecccCCCeEEEeecccc----------EEEEEeccCCCCcEEEEEECCEECCCCC
Confidence 8876655444433 2356667777764321 23466665 5889999999999998877
Q ss_pred eEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEec--------------ccCCCCCeeec-CCCce
Q psy16852 353 EVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEK--------------EESGEAPKFTK-PLKPV 417 (579)
Q Consensus 353 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~--------------~~~~~~p~~~~-~~~~~ 417 (579)
++..... .+.+.|.|.++..+|+|.|+|.|.|..|....++.+.+... ......|.+.. .+...
T Consensus 154 ~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 232 (317)
T 2y25_A 154 RVKTGVT-GEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVV 232 (317)
T ss_dssp SEEEEEC-SSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEE
T ss_pred CeEEecc-CCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccE
Confidence 7665443 45568999999999999999999999998888877765421 01112344443 35557
Q ss_pred eeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCe
Q psy16852 418 IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR 497 (579)
Q Consensus 418 ~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~ 497 (579)
.+..|+.++|.|.+.|.|.|.+.|+++|..+..+.++.+.. .++..
T Consensus 233 ~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~----------------------------------~~~~~ 278 (317)
T 2y25_A 233 TIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKF----------------------------------EAGRT 278 (317)
T ss_dssp EEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECC----------------------------------BTTTE
T ss_pred EEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEE----------------------------------cCCCE
Confidence 89999999999999999999999999999987666554422 01344
Q ss_pred eEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 498 SVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 498 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
+.|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 279 ~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 314 (317)
T 2y25_A 279 AYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 314 (317)
T ss_dssp EEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEE
Confidence 669999999999999999999999999999999986
No 42
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=100.00 E-value=5.2e-34 Score=282.46 Aligned_cols=366 Identities=14% Similarity=0.143 Sum_probs=228.3
Q ss_pred CceEEccCCcEEEEEEEEeec--CCeEEEEECC--EEcc-----------------CCCCceEEEcCCCCeEEEEECcCC
Q psy16852 113 KPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EEIL-----------------PDNGHTMEFNPTTGECVLSISEAT 171 (579)
Q Consensus 113 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~l~i~~~~ 171 (579)
..+.+.+|+.++|.|.+.+.+ .+.+.||++. ..+. ...+..+..+...+.++|.|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 87 (444)
T 1igt_B 8 GGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRLK 87 (444)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCCC
Confidence 456788999999999998764 5789999852 2110 112444444444567899999999
Q ss_pred CCCCeEEEEEEEcCCcee---EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCC-eEEEE
Q psy16852 172 PQDEAVYSVKAVNTFGRA---ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTP-EVKWF 246 (579)
Q Consensus 172 ~~d~G~Y~C~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~ 246 (579)
.+|+|.|+|.+.+..+.. .....+.+... ...+|.+........+.+|+.+.|.|.+.+. |.+ .+.|+
T Consensus 88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~-------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~ 160 (444)
T 1igt_B 88 SEDTAMYYCARHGGYYAMDYWGQGTTVTVSSA-------KTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWN 160 (444)
T ss_dssp GGGCEEEEEEEECSSSCEEEEBCCEEEEECSC-------CCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEG
T ss_pred HHHCEEEEEEEecCCcccccccCcEEEEecCC-------CCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEe
Confidence 999999999999875432 11234444311 1123444322222235789999999999884 776 99999
Q ss_pred ECCEEecc---Cce---EEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEE----------------eccce
Q psy16852 247 KNGKEIVS---KDI---ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT----------------VAEAE 304 (579)
Q Consensus 247 ~~~~~i~~---~~~---~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~----------------~~~~~ 304 (579)
+++..+.. ... ......+.|.|.++..+| |.|+|.|.|..+.......+.+. +...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p 239 (444)
T 1igt_B 161 SGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGP 239 (444)
T ss_dssp GGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCC
T ss_pred cCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCc
Confidence 98875311 000 011223578999999889 99999999998875444433221 00011
Q ss_pred eeeeeeeeeccccC-ceeeeecCeeEEEeeeC----CCeEEEEECCEEccCCCeEEEEECCC----CeEEEEEcccCCCC
Q psy16852 305 TVMMDVRVESHPTA-SFQWFIHSEPVVVTGKP----TPLVTWSHDGTPMKEGKEVTIYQDTD----GLCKLAISEVFPEN 375 (579)
Q Consensus 305 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~g~p----~~~i~W~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d 375 (579)
.+.+.... ... ........+.|.+.|.| .+.+.|++++..+............+ ..+.|.|.++..+|
T Consensus 240 ~v~~~~p~---~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d 316 (444)
T 1igt_B 240 SVFIFPPK---IKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMS 316 (444)
T ss_dssp EEEEECCC---HHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHT
T ss_pred eEEecCCc---hhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhcc
Confidence 11111100 000 12233345569999984 36999999998876543221111111 23589999999999
Q ss_pred CEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCC-ceeeecCCCeEEEEEEEe-eCCC-eEEEeeCCEEcCCCC
Q psy16852 376 AGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLK-PVIAEAQSPATLKATVTG-RPTP-SICWYRGKEEILPDN 452 (579)
Q Consensus 376 ~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~-~~~~~~g~~~~l~C~~~g-~p~~-~v~W~~~~~~l~~~~ 452 (579)
+|.|+|.|.|..|.......+.+ ......+|.+...+. ...+..| .++|.|.+.| .|++ .|.|+++|..+....
T Consensus 317 ~G~Y~C~a~n~~~~~~~~~~v~~--~~~~~~~P~v~~~~~~~~~~~~~-~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~ 393 (444)
T 1igt_B 317 GKEFKCKVNNKDLPAPIERTISK--PKGSVRAPQVYVLPPPEEEMTKK-QVTLTCMVTDFMPEDIYVEWTNNGKTELNYK 393 (444)
T ss_dssp TCEEEEEEECTTCSSCEEEEEEC--CCCCCBCCEEEEECCCGGGTTSS-EEEEEEEEEEEBSSCCEEEEEETTEECSSEE
T ss_pred CCcEEEEEEcCCCCCceEEEEec--cCCCCCCCEEEEeCCChHHccCC-eEEEEEEEEeeeCCCCEEEEEECCEEccccc
Confidence 99999999999886533333321 111224676653332 2234445 4999999998 4655 999999999873211
Q ss_pred CeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCe
Q psy16852 453 GHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAG 522 (579)
Q Consensus 453 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 522 (579)
. ......+.|.|.+. +.|.|.....+|.|.|+|.|.|...
T Consensus 394 ~----------------~~~~~~~~g~~~~~--------------s~l~i~~~~~~d~g~YtC~a~n~~l 433 (444)
T 1igt_B 394 N----------------TEPVLDSDGSYFMY--------------SKLRVEKKNWVERNSYSCSVVHEGL 433 (444)
T ss_dssp E----------------CCCEECTTSCEEEE--------------EEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred c----------------ccceeCCCCCEEEE--------------EEEEEChHHhcCCCeEEEEEECCCc
Confidence 0 01111333444433 3488888888899999999999853
No 43
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=100.00 E-value=5.4e-34 Score=276.96 Aligned_cols=306 Identities=18% Similarity=0.247 Sum_probs=218.9
Q ss_pred CCeEeccCCceee---CCCCeEEEEEEEEccCCCeEEEEECCEEeccCc---eEEeCCeEEEEEcccCC-CCCeEEEEEE
Q psy16852 211 APTIVRPLQALLV---PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTK-KTTGKYEIRV 283 (579)
Q Consensus 211 ~p~~~~~~~~~~~---~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~---~~~~~~~~~l~i~~~~~-~d~G~y~C~a 283 (579)
+|.+...+....+ .+|+.+.|.|.+.+.|.+.+.|+++|..+.... .... ...|.|.++.. +|+|.|+|.|
T Consensus 4 ~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~--~~~L~i~~~~~~~D~G~Y~C~a 81 (382)
T 1cs6_A 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV--AGDLVISNPVKAKDAGSYQCVA 81 (382)
T ss_dssp EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEE--TTEEEEESCCHHHHCEEEEEEE
T ss_pred CCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEee--CCeEEEecccccccCEEEEEEE
Confidence 5666666666555 789999999999999999999999999987542 2222 23699999987 9999999999
Q ss_pred EcCCeeeEE-EEEEEEEeccceeeeee--eeeeccccCceeeeecCeeEEE-eeeCCCeEEEEECCEEcc--CCCeEEEE
Q psy16852 284 VNEAGEART-SGSVTITVAEAETVMMD--VRVESHPTASFQWFIHSEPVVV-TGKPTPLVTWSHDGTPMK--EGKEVTIY 357 (579)
Q Consensus 284 ~n~~g~~~~-~~~~~v~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~-~g~p~~~i~W~~~~~~~~--~~~~~~~~ 357 (579)
.|..|.... ...+.|...+....... ..+..+ ....+.|.+ .+.|.+.+.|++++.++. ...+...
T Consensus 82 ~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G-------~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~- 153 (382)
T 1cs6_A 82 TNARGTVVSREASLRFGFLQEFSAEERDPVKITEG-------WGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFV- 153 (382)
T ss_dssp EETTEEEECCCEEEEEEEECCCCSSCCCCEEEETT-------SCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEE-
T ss_pred EcCCcEEEecceEEEeeccccccccCCCceEEecC-------CcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEE-
Confidence 999886532 34555543221111000 011111 112234553 567889999999987653 2222222
Q ss_pred ECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEE-----EEEEEEEecccCCCCCeeec-CCCceeeecCCCeEEEEEE
Q psy16852 358 QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVA-----AATLAVEEKEESGEAPKFTK-PLKPVIAEAQSPATLKATV 431 (579)
Q Consensus 358 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-----~~~l~v~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~ 431 (579)
.... ..|.|.++..+|+|.|+|.+.|..|.... ...|.+........+|.+.. .+....+.+|+.++|.|.+
T Consensus 154 ~~~~--~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~ 231 (382)
T 1cs6_A 154 SQTT--GNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFA 231 (382)
T ss_dssp CTTT--CCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEE
T ss_pred ecCc--eEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEE
Confidence 1222 27999999999999999999998743222 23455443222222455543 3456789999999999999
Q ss_pred EeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccce
Q psy16852 432 TGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIG 511 (579)
Q Consensus 432 ~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 511 (579)
.|.|.|.+.|++++..+.... ....+.|.|.+++.+|+|
T Consensus 232 ~g~p~~~i~W~~~~~~~~~~~-----------------------------------------~~~~~~L~i~~~~~~d~G 270 (382)
T 1cs6_A 232 FGNPVPQIKWRKLDGSQTSKW-----------------------------------------LSSEPLLHIQNVDFEDEG 270 (382)
T ss_dssp EEESCCEEEEEECCSCCSCCC-----------------------------------------SBSSSEEEECSCCGGGCE
T ss_pred ccCCCCEEEEEECCcccccEE-----------------------------------------ecCCcEEEEccCChhhCE
Confidence 999999999999876653200 112345999999999999
Q ss_pred eEEEEEEeCCeeEEEEEEEEEeeCCcccccccCCccccCCCceEEecCCcEEEEEEeccceeecccc
Q psy16852 512 DVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEIPL 578 (579)
Q Consensus 512 ~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~ 578 (579)
.|+|.|.|..|.....+.|.|. .+|.+...+....+..|+.++|.|.+.+.|++.|.|
T Consensus 271 ~Y~C~a~n~~g~~~~~~~l~V~---------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W 328 (382)
T 1cs6_A 271 TYECEAENIKGRDTYQGRIIIH---------AQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRW 328 (382)
T ss_dssp EEEEEEEETTEEEEEEEEEEEE---------EEEEEEECCCCEEEETTCCEEEECEEEEESCCEEEE
T ss_pred EEEEEEEcCCCeEEEEEEEEEe---------cCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEE
Confidence 9999999999999888888865 678888888889999999999999999999988877
No 44
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=2.6e-34 Score=280.72 Aligned_cols=317 Identities=19% Similarity=0.258 Sum_probs=227.9
Q ss_pred ccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCCeEEEEECCEEeccCc--eEEeCCeEEEEEcccCCCCCeEEEEEEE
Q psy16852 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTPEVKWFKNGKEIVSKD--IETKDNVTKLVIKQTTKKTTGKYEIRVV 284 (579)
Q Consensus 208 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~i~~~~--~~~~~~~~~l~i~~~~~~d~G~y~C~a~ 284 (579)
+..+|.+...+....+.+|+.+.|.|.+.+ .|.+.+.|+++|..+.... .........|.|.+++.+|+|.|+|.|.
T Consensus 3 v~~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 82 (395)
T 1bih_A 3 VDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAE 82 (395)
T ss_dssp --CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEE
T ss_pred cCCCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEEEE
Confidence 346888888888888999999999999998 7888999999998886553 3334455679999999999999999999
Q ss_pred cCCeeeE-EEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEE-eeeCCCeEEEEECC---EEccC----CCeEE
Q psy16852 285 NEAGEAR-TSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVV-TGKPTPLVTWSHDG---TPMKE----GKEVT 355 (579)
Q Consensus 285 n~~g~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~g~p~~~i~W~~~~---~~~~~----~~~~~ 355 (579)
|..|... ..+.+.+.....+.+... ...........+.|.+ .|.|.+.+.|++++ .+... ..++.
T Consensus 83 n~~g~~~s~~~~l~v~~~~~p~~~~~------~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~ 156 (395)
T 1bih_A 83 TPAGVASSRVISFRKTYLIASPAKTH------EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRIT 156 (395)
T ss_dssp ETTEEEECCCEEEEEEEEECCCCEEE------EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEE
T ss_pred eCCCeEEeEEEEEEEEEeecCCcCCc------ceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEE
Confidence 9888754 234555543332222111 1111122333445774 78899999999986 22211 22222
Q ss_pred EEECCCCeEEEEEcccCCCCCE---EEEEEEEcCceeEEEEEEEEEEecccC-------CCCCeeecCCCceeeecCCCe
Q psy16852 356 IYQDTDGLCKLAISEVFPENAG---LYSCTAVNPVGEAVAAATLAVEEKEES-------GEAPKFTKPLKPVIAEAQSPA 425 (579)
Q Consensus 356 ~~~~~~~~~~l~i~~~~~~d~G---~Y~C~a~n~~g~~~~~~~l~v~~~~~~-------~~~p~~~~~~~~~~~~~g~~~ 425 (579)
. ..++ .|.|.++..+|+| .|+|.|.|..|................ ..+|.+ .+....+.+|+.+
T Consensus 157 ~--~~~~--~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~v 230 (395)
T 1bih_A 157 A--GPDG--NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAGDVT 230 (395)
T ss_dssp E--CTTS--CEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETTSCE
T ss_pred E--cCCC--cEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCceEEECCCcE
Confidence 2 2233 6999999999999 999999999886544333222211110 113333 2456778999999
Q ss_pred EEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeec
Q psy16852 426 TLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKI 505 (579)
Q Consensus 426 ~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~ 505 (579)
+|.|.+.|.|.+.+.|+++|..+.......+.. ......+.|.|.++
T Consensus 231 ~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~---------------------------------~~~~~~~~L~i~~~ 277 (395)
T 1bih_A 231 MIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITR---------------------------------HNRTSGKRLLFKTT 277 (395)
T ss_dssp EEEEEEECSSCCCCEEEETTEECCCCTTSSEES---------------------------------CSSSTTSEEEESSC
T ss_pred EEEEEeccCCCCeEEEEECCEEcCCCCceeEEE---------------------------------EecCCCceEEEccC
Confidence 999999999999999999999886544332211 00122346999999
Q ss_pred ccccceeEEEEEEeCCeeEEE-EEEEEEeeCCcccccccCCccccCCCc-eEEecCCcEEEEEEeccceeecccc
Q psy16852 506 TRDQIGDVTCRAENVAGSVTC-TATLSLLPESEVTDVMESPRFIKTPET-AKVMDGQSVLFTAQVGYSERLEIPL 578 (579)
Q Consensus 506 ~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~~~~~~v~~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~~~~~~~~ 578 (579)
..+|+|.|+|.|.|..|.... ++.|.|. .+|.+...+.. ..+..|+.++|.|.+.+.|+++|.|
T Consensus 278 ~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~---------~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W 343 (395)
T 1bih_A 278 LPEDEGVYTCEVDNGVGKPQKHSLKLTVV---------SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVW 343 (395)
T ss_dssp CGGGCEEEEEEECCSSSSCEEEEEEEEEE---------EEEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEE
T ss_pred ChhhCEEEEEEEEeCCCCceEEEEEEEEE---------cCCccccCCCcceEecCCCeEEEEEEECcccCCeeEE
Confidence 999999999999999998655 8888865 67888877776 8899999999999999999998877
No 45
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=100.00 E-value=2e-33 Score=265.05 Aligned_cols=282 Identities=16% Similarity=0.245 Sum_probs=212.1
Q ss_pred cCceeeeCCCCEEEEEEEE-eeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEE
Q psy16852 13 IQPVVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCS 91 (579)
Q Consensus 13 p~~~~v~~G~~~~l~C~~~-~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~ 91 (579)
+-.+.|.+|+.+.|+|... +.|.+.+.|+|+|..+....++.....+....|.|.+++.+|+|.|+|.+.|..|... +
T Consensus 8 ~~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s 86 (312)
T 2y23_A 8 EVVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-S 86 (312)
T ss_dssp CCEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-E
T ss_pred ceeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-E
Confidence 4457899999999999985 4678899999999999988888888888889999999999999999999999877544 4
Q ss_pred EEEEEEecccCC------CCCceecCC-CceEEccCCcEEEEEEEE-eecCCeEEEEECCEEccCCCCceEEEcCCCCeE
Q psy16852 92 ANLIVLEKEESG------EAPKFTKPL-KPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163 (579)
Q Consensus 92 ~~~~v~~~~~~~------~~~~~~~~~-~~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~ 163 (579)
..+.|....... .+|.+.... ....+.+|+.+.|.|.+. +.|.+.+.|++++..+....+..+..+...+..
T Consensus 87 ~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~ 166 (312)
T 2y23_A 87 YLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGII 166 (312)
T ss_dssp EEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEE
T ss_pred EEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEE
Confidence 445543210000 022222222 267788999999999998 889999999999999988877777776667778
Q ss_pred EEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccC----------CCCccCCCeEeccCCceeeCCCCeEEEEE
Q psy16852 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTID----------KPRVLEAPTIVRPLQALLVPKDSTVTLEA 233 (579)
Q Consensus 164 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~----------~~~~~~~p~~~~~~~~~~~~~g~~~~l~C 233 (579)
.|.|.+++.+|+|.|+|.+.+..+..... +.+....... ......+|.+..... ..+.+|+.+.|.|
T Consensus 167 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~v~~G~~~~l~C 243 (312)
T 2y23_A 167 EMFMEKLQDEDEGTYTFQLQDGKATNHST--VVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS-WEVTGECNVLLKC 243 (312)
T ss_dssp EEEESCCCGGGCEEEEEEEESSSCEEEEE--EEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEE-EEEETTTEEEEEE
T ss_pred EEEEccCCcccCEeEEEEEEeCCceEEEE--EEEcchhhhhhcccccccccchhhccCCceeecce-EEEeCCCEEEEEE
Confidence 89999999999999999998755443332 3321000000 000112355443333 5688999999999
Q ss_pred EEEccCCC-eEEEEECCEEeccCc-eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEE
Q psy16852 234 EYTGTPTP-EVKWFKNGKEIVSKD-IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298 (579)
Q Consensus 234 ~~~~~p~~-~v~W~~~~~~i~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v 298 (579)
.+.+.|.+ .+.|++++..+.... .........|.|.++..+|+|.|+|.|.|..|....++.|.+
T Consensus 244 ~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i 310 (312)
T 2y23_A 244 KVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310 (312)
T ss_dssp EEESCCSSCEEEEEETTEEEEEECCC----CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECS
T ss_pred EEcCCCCCCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEe
Confidence 99999888 999999999987433 333355679999999999999999999999999887777654
No 46
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=100.00 E-value=7.7e-34 Score=282.21 Aligned_cols=370 Identities=14% Similarity=0.215 Sum_probs=227.1
Q ss_pred ccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEEC--CE---Ee--------------cCCCCEEEEEe--CCEEEEEE
Q psy16852 10 IEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKD--GT---EL--------------HATEHYLITTV--ESVSTLEI 66 (579)
Q Consensus 10 ~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~--g~---~~--------------~~~~~~~~~~~--~~~~~L~i 66 (579)
+..|..+.+.+|++++|.|.+.+.+ .+.+.|||+ |. .+ ....++.+... .....|+|
T Consensus 4 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (457)
T 1hzh_H 4 LVQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMEL 83 (457)
T ss_dssp EEECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred EecCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEE
Confidence 3456778999999999999998765 568999984 22 11 01245555443 35689999
Q ss_pred cCCCCCCCEEEEEEEEcCCe------------eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-c
Q psy16852 67 INPTKEDIGVYTCKATNIGG------------VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-P 133 (579)
Q Consensus 67 ~~~~~~d~G~Y~C~~~~~~g------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p 133 (579)
.+++.+|+|.|+|.+.+..| .....+.+.|...+ ..+|.+........+.+|+.++|.|.+.+. |
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P 161 (457)
T 1hzh_H 84 RSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSAS--TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP 161 (457)
T ss_dssp CSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCC--CBCCEEEEECCCSCCCTTCCEEEEEEEESBBS
T ss_pred CCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCC--CCCCeEEecCccccccCCCcEEEEEEEeEEeC
Confidence 99999999999999998754 22234567775421 123443332223345789999999999886 6
Q ss_pred C-CeEEEEECCEEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccC----
Q psy16852 134 T-PSICWYRGKEEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTID---- 204 (579)
Q Consensus 134 ~-~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~---- 204 (579)
. +.|.|++++..+... ...... ..++ .+.|.|.++..+| |.|+|.+.|..+.......+.+.......
T Consensus 162 ~~~~v~W~k~~~~~~~~-~~~~~~-~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~ 238 (457)
T 1hzh_H 162 EPVTVSWNSGALTSGVH-TFPAVL-QSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPP 238 (457)
T ss_dssp CCCEEEETTTTBCTTEE-EEEEEE-CTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCS
T ss_pred CCeEEEEEeCCEeccce-EcCceE-CCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCC
Confidence 4 799999998643211 000111 1111 2479999999999 99999999987765444333322100000
Q ss_pred --CCCccCCCeE-eccCCcee-eCCCCeEEEEEEEEccCCC----eEEEEECCEEeccCce--EEeCCeEEEEE------
Q psy16852 205 --KPRVLEAPTI-VRPLQALL-VPKDSTVTLEAEYTGTPTP----EVKWFKNGKEIVSKDI--ETKDNVTKLVI------ 268 (579)
Q Consensus 205 --~~~~~~~p~~-~~~~~~~~-~~~g~~~~l~C~~~~~p~~----~v~W~~~~~~i~~~~~--~~~~~~~~l~i------ 268 (579)
.+.+..+|.+ ..++.... +.+|+.+.|.|.+.+.|++ .+.|++++..+..... ........+.+
T Consensus 239 ~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i 318 (457)
T 1hzh_H 239 CPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTV 318 (457)
T ss_dssp CCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECC
T ss_pred CCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEE
Confidence 0011234554 33333222 6789999999999987543 9999999988764321 11111112222
Q ss_pred cccCCCCCeEEEEEEEcCCeeeEEEEEEEE--EeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCC--eEEEEEC
Q psy16852 269 KQTTKKTTGKYEIRVVNEAGEARTSGSVTI--TVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTP--LVTWSHD 344 (579)
Q Consensus 269 ~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~--~i~W~~~ 344 (579)
.....+|+|.|+|.|.|..+.......+.+ .+...+.+.+... ....+......+.|.+.|.+++ .+.|+++
T Consensus 319 ~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~----~~~~~~~~~~~l~C~~~g~~p~~~~v~W~k~ 394 (457)
T 1hzh_H 319 LHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPP----SRDELTKNQVSLTCLVKGFYPSDIAVEWESN 394 (457)
T ss_dssp CHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCEEEEECC----CGGGGGSSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred CHHHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCeEEEECC----CccccCCCcEEEEEEEEeEECCCCEEEEEEC
Confidence 233333499999999987655433333322 1223333332211 1111111124567999997554 9999999
Q ss_pred CEEccCCCeEEEEECCCCe----EEEEEcccCCCCCEEEEEEEEcCce
Q psy16852 345 GTPMKEGKEVTIYQDTDGL----CKLAISEVFPENAGLYSCTAVNPVG 388 (579)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g 388 (579)
|..+............++. +.|.|.....+|+|.|+|.|.|...
T Consensus 395 g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l 442 (457)
T 1hzh_H 395 GQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL 442 (457)
T ss_dssp TEECCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred CEECcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECCC
Confidence 9998654332222333432 3466666666789999999999764
No 47
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=100.00 E-value=5.6e-34 Score=279.27 Aligned_cols=314 Identities=19% Similarity=0.339 Sum_probs=222.8
Q ss_pred cCCCeEec-cCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc---eEEeCCeEEEEEc----ccCCCCCeEEE
Q psy16852 209 LEAPTIVR-PLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIK----QTTKKTTGKYE 280 (579)
Q Consensus 209 ~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~---~~~~~~~~~l~i~----~~~~~d~G~y~ 280 (579)
..+|.+.. ++....+.+|+.+.|.|.+.|.|.+.+.|+++|..+.... .........|.|. ++..+|+|.|+
T Consensus 14 ~~~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~Y~ 93 (404)
T 3p3y_A 14 TQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQ 93 (404)
T ss_dssp CCCCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEEEE
T ss_pred cCCCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEEEE
Confidence 45676664 4566789999999999999999999999999999875432 2222334456554 78889999999
Q ss_pred EEEEcCCeeeE-EEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEE-eeeCCCeEEEEECCEEc-cCCCeEEEE
Q psy16852 281 IRVVNEAGEAR-TSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVV-TGKPTPLVTWSHDGTPM-KEGKEVTIY 357 (579)
Q Consensus 281 C~a~n~~g~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~g~p~~~i~W~~~~~~~-~~~~~~~~~ 357 (579)
|.|.|..|... ....+.|...+........ +..........+.|.+ .|.|.+.+.|++++... ....+...
T Consensus 94 C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~-----~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~- 167 (404)
T 3p3y_A 94 CFARNKFGTALSNRIRLQVSKSPLWPKENLD-----PVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQ- 167 (404)
T ss_dssp EEEECSSCEEEEEEEEEEECCCCCCCCCCCC-----CEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEE-
T ss_pred EEEEcCCCeEeeeeEEEEEeccCccccCCCC-----CeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEE-
Confidence 99999988753 3444444322211100000 0001111222345766 78899999999987543 33333332
Q ss_pred ECCCCeEEEEEcccCCCC-CEEEEEEEEcCceeEEE---EEEEEEEeccc-CCCCCeeecCC---CceeeecCCCeEEEE
Q psy16852 358 QDTDGLCKLAISEVFPEN-AGLYSCTAVNPVGEAVA---AATLAVEEKEE-SGEAPKFTKPL---KPVIAEAQSPATLKA 429 (579)
Q Consensus 358 ~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~~---~~~l~v~~~~~-~~~~p~~~~~~---~~~~~~~g~~~~l~C 429 (579)
..++ .|.|.++..+| +|.|+|.|.|..|.... .+.+.+...+. ...+|.+..+. ....+.+|+.++|.|
T Consensus 168 -~~~~--~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C 244 (404)
T 3p3y_A 168 -GHNG--DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLEC 244 (404)
T ss_dssp -CTTS--CEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEEC
T ss_pred -cCCC--cEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEE
Confidence 2223 69999999999 59999999998775322 24555543221 12244444332 345688999999999
Q ss_pred EEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeeccccc
Q psy16852 430 TVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQ 509 (579)
Q Consensus 430 ~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d 509 (579)
.+.|.|.+.+.|+++|..+...... . ....+.|.|.++..+|
T Consensus 245 ~~~g~p~~~v~W~~~~~~~~~~~~~-~-------------------------------------~~~~~~L~i~~~~~~d 286 (404)
T 3p3y_A 245 IASGVPTPDIAWYKKGGDLPSDKAK-F-------------------------------------ENFNKALRITNVSEED 286 (404)
T ss_dssp CBCCSSCCEEEEEETTBCCCTTTEE-E-------------------------------------EGGGTEEEESSCCGGG
T ss_pred EECCCCCCcEEEEECCEECCCCccc-c-------------------------------------cccCceEEEccCCHhH
Confidence 9999999999999999887544321 1 1123459999999999
Q ss_pred ceeEEEEEEeCCeeEEEEEEEEEeeCCcccccccCCccccCCCceEEecCCcEEEEEEeccceeecccc
Q psy16852 510 IGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEIPL 578 (579)
Q Consensus 510 ~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~ 578 (579)
+|.|+|.|.|..|.....+.|.|. .+|.+...+....+..|+.++|.|.+.++|++.|.|
T Consensus 287 ~G~Y~C~a~n~~g~~~~~~~l~V~---------~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W 346 (404)
T 3p3y_A 287 SGEYFCLASNKMGSIRHTISVRVK---------AAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQW 346 (404)
T ss_dssp CEEEEEEEECSSCEEEEEEEEEEE---------EEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEE
T ss_pred CEEEEEEEEeCCCcEEEEEEEEEe---------CCCeeeccCCcceeecCCcEEEEEEccccCCCceEE
Confidence 999999999999999888888865 678888888889999999999999999999988877
No 48
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=100.00 E-value=1.6e-31 Score=266.53 Aligned_cols=369 Identities=14% Similarity=0.158 Sum_probs=227.2
Q ss_pred CCCceEEccCCcEEEEEEEEeec--CCeEEEEECC--EE---cc--------------CCCCceEEEcCCCCeEEEEECc
Q psy16852 111 PLKPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EE---IL--------------PDNGHTMEFNPTTGECVLSISE 169 (579)
Q Consensus 111 ~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~---~~--------------~~~~~~~~~~~~~~~~~l~i~~ 169 (579)
.+..+.+.+|+.++|.|.+.+.+ ...+.||+.. .. +. ...++.+..+...+..+|.|.+
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 86 (475)
T 1iga_A 7 QSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSS 86 (475)
T ss_pred cCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEECC
Confidence 45667888999999999998754 5789999853 11 10 0123333333334567999999
Q ss_pred CCCCCCeEEEEEEEcCCce------eEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CC-C
Q psy16852 170 ATPQDEAVYSVKAVNTFGR------AECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PT-P 241 (579)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~ 241 (579)
++.+|+|.|+|.+.+..+. ......+.|... ...+|.+..... ..+.+|+.+.|.|.+.+. |. +
T Consensus 87 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~-------~~~~P~i~~~~~-~~~~~g~~v~L~C~~~g~~P~~p 158 (475)
T 1iga_A 87 LRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSA-------SPTSPKVFPLSL-CSTQPDGNVVIACLVQGFFPQEP 158 (475)
T ss_pred CChhhCEEEEEEEeccCCCccceeeecCceEEEeccC-------CCcCCeEEecCc-cccCCCCeEEEEEEEeeecCCCc
Confidence 9999999999999987652 112234444310 012344332221 123689999999999986 65 5
Q ss_pred -eEEEEECCEEeccCc---e-----EEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEecc----------
Q psy16852 242 -EVKWFKNGKEIVSKD---I-----ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE---------- 302 (579)
Q Consensus 242 -~v~W~~~~~~i~~~~---~-----~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~---------- 302 (579)
.+.|++++....... . ......+.|.|.....+|.|.|+|.|.|..+. .....+.+.+..
T Consensus 159 ~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~-~~~~~v~l~V~~~~~~~~~~~~ 237 (475)
T 1iga_A 159 LSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNP-SQDVTVPCPVPSTPPTPSPSTP 237 (475)
T ss_pred eEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCC-ceeeeEecccccCccccccccc
Confidence 999999885321110 0 01111246888888889999999999998863 223333322211
Q ss_pred --------ceeeeeeeeeeccccCceeeeecCeeEEEeeeCC---CeEEEEECCEEccCCCeEEEEECCC----CeEEEE
Q psy16852 303 --------AETVMMDVRVESHPTASFQWFIHSEPVVVTGKPT---PLVTWSHDGTPMKEGKEVTIYQDTD----GLCKLA 367 (579)
Q Consensus 303 --------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~---~~i~W~~~~~~~~~~~~~~~~~~~~----~~~~l~ 367 (579)
.+.+.+.. .............+.|.+.|.++ +.++| ++..+............+ ..+.|.
T Consensus 238 ~~~~~~~~~p~v~~~~---p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~ 312 (475)
T 1iga_A 238 PTPSPSCCHPRLSLHR---PALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLP 312 (475)
T ss_pred ccCCCCCCCcEEEEcC---CChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEE
Confidence 11111110 00001123344556798888755 69999 444433221111111111 234799
Q ss_pred EcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecC-CCceeeecCCCeEEEEEEEeeCC--CeEEEeeC
Q psy16852 368 ISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKP-LKPVIAEAQSPATLKATVTGRPT--PSICWYRG 444 (579)
Q Consensus 368 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~--~~v~W~~~ 444 (579)
|.++..+|+|.|+|.|.|..|.......+.+.. ...+|.+... +....+..|+.++|.|.+.|.++ +.|.|+++
T Consensus 313 I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~---~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~ 389 (475)
T 1iga_A 313 GCAEPWNHGKTFTCTAAYPESKTPLTATLSKSG---NTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQG 389 (475)
T ss_pred EchHHhccCCcEEEEEEcCCCCCceEEEeecCC---CCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEEC
Confidence 999999999999999999988765444443311 1246666533 33334678999999999998643 49999999
Q ss_pred CEEcCCCCCeeEEEcCCCCeEEEEEccccCC---CceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCC
Q psy16852 445 KEEILPDNGHTMEFNPTTGECVLSISEATPQ---DEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVA 521 (579)
Q Consensus 445 ~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~---d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 521 (579)
|..+..+.... ...... ..|.|... +.|.|.....+|.|.|+|.|.|..
T Consensus 390 g~~l~~~~~~~--------------~~~~~~~~~~~gt~~~~--------------s~L~i~~~~~~~~g~YtC~a~n~~ 441 (475)
T 1iga_A 390 SQELPREKYLT--------------WASRQEPSQGTTTFAVT--------------SILRVAAEDWKKGDTFSCMVGHEA 441 (475)
T ss_pred CEECCCCceee--------------cccccccCCCCCcEEEE--------------EEEEEChHHhcCCCEEEEEEEcCC
Confidence 99886542111 011112 33445433 348899888899999999999986
Q ss_pred eeE
Q psy16852 522 GSV 524 (579)
Q Consensus 522 g~~ 524 (579)
...
T Consensus 442 l~~ 444 (475)
T 1iga_A 442 LPL 444 (475)
T ss_pred CCC
Confidence 653
No 49
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=100.00 E-value=1.3e-32 Score=273.32 Aligned_cols=368 Identities=13% Similarity=0.121 Sum_probs=225.1
Q ss_pred CCceEEccCCcEEEEEEEEeec--CCeEEEEECC--E---Ecc--------------CCCCceEEEcCCCCeEEEEECcC
Q psy16852 112 LKPVIAEAQSPATLKATVTGRP--TPSICWYRGK--E---EIL--------------PDNGHTMEFNPTTGECVLSISEA 170 (579)
Q Consensus 112 ~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~---~~~--------------~~~~~~~~~~~~~~~~~l~i~~~ 170 (579)
+..+.+.+|+.++|.|.+.+.+ .+.+.||++. . .+. ...+..+..+...+...|.|.++
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (457)
T 1hzh_H 7 SGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSL 86 (457)
T ss_dssp CCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCC
Confidence 3456788999999999998766 6789999842 1 110 12233444444456789999999
Q ss_pred CCCCCeEEEEEEEcCCc------------eeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc
Q psy16852 171 TPQDEAVYSVKAVNTFG------------RAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT 238 (579)
Q Consensus 171 ~~~d~G~Y~C~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~ 238 (579)
+.+|+|.|+|.+.+..+ .......+.+... ...+|.+........+.+|+.+.|.|.+.+.
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~-------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~ 159 (457)
T 1hzh_H 87 RSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSA-------STKGPSVFPLAPSSKSTSGGTAALGCLVKDY 159 (457)
T ss_dssp CGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSC-------CCBCCEEEEECCCSCCCTTCCEEEEEEEESB
T ss_pred CcccCEEEEEEEecCCccccccccccccceECCcEEEEecCC-------CCCCCeEEecCccccccCCCcEEEEEEEeEE
Confidence 99999999999998754 1112334444321 1124544433333346789999999999986
Q ss_pred -CC-CeEEEEECCEEeccCc--eEE-----eCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEec--------
Q psy16852 239 -PT-PEVKWFKNGKEIVSKD--IET-----KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA-------- 301 (579)
Q Consensus 239 -p~-~~v~W~~~~~~i~~~~--~~~-----~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~-------- 301 (579)
|. +.+.|++++..+.... ... ....+.|.|.++..+| |.|+|.|.|..+.......+.+...
T Consensus 160 ~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~ 238 (457)
T 1hzh_H 160 FPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPP 238 (457)
T ss_dssp BSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCS
T ss_pred eCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCC
Confidence 65 7999999986432111 000 1112479999999989 9999999998776544433332210
Q ss_pred -------cceeeeeeeeeeccccC-ceeeeecCeeEEEeeeCCC----eEEEEECCEEccCCCeEEEEECCCCeE----E
Q psy16852 302 -------EAETVMMDVRVESHPTA-SFQWFIHSEPVVVTGKPTP----LVTWSHDGTPMKEGKEVTIYQDTDGLC----K 365 (579)
Q Consensus 302 -------~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~g~p~~----~i~W~~~~~~~~~~~~~~~~~~~~~~~----~ 365 (579)
..+.+.+.. ..... ........+.|.+.|.|++ .++|++++..+............++.. .
T Consensus 239 ~~~~~~~~~p~v~~~~---p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~ 315 (457)
T 1hzh_H 239 CPAPELLGGPSVFLFP---PKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSV 315 (457)
T ss_dssp CCCCCCSSSCEEEEEC---CCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEE
T ss_pred CCCccccCCceEEeEC---cCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEE
Confidence 011111110 00000 1123345567999998653 999999999886544333333333321 2
Q ss_pred EEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCC-CceeeecCCCeEEEEEEEeeCCC--eEEEe
Q psy16852 366 LAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPL-KPVIAEAQSPATLKATVTGRPTP--SICWY 442 (579)
Q Consensus 366 l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~~--~v~W~ 442 (579)
|.|.....+|+|.|+|.|.|..+.......+.+ ......+|.+...+ ....+..|+ ++|.|.+.|.|++ .|.|+
T Consensus 316 l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~--~~~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~ 392 (457)
T 1hzh_H 316 LTVLHQDWLNGKEYKCKVSNKALPAPIEKTISK--AKGQPREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWE 392 (457)
T ss_dssp ECCCHHHHHHTCCEEEEEECTTSSSCEEEEECC--CCCCCBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEE
T ss_pred EEECHHHccCCCcEEEEEeCCCCCCcceEEEEc--ccCCCCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEE
Confidence 222232233499999999987654433333322 11122366665433 333455566 9999999997554 99999
Q ss_pred eCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCe
Q psy16852 443 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAG 522 (579)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 522 (579)
++|..+...... .......|.|.+. +.|.|.....+|+|.|+|.|.|...
T Consensus 393 k~g~~l~~~~~~----------------~~~~~~~g~~~~~--------------s~l~i~~~~~~~~g~YtC~a~n~~l 442 (457)
T 1hzh_H 393 SNGQPENNYKTT----------------PPVLDSDGSFFLY--------------SKLTVDKSRWQQGNVFSCSVMHEAL 442 (457)
T ss_dssp ETTEECCCEEEC----------------CCEECTTSCEEEE--------------EEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred ECCEECcceeec----------------CceeCCCCCEEEE--------------EEEEEChHHccCCCeEEEEEEECCC
Confidence 999988532111 1112233444333 3488888888899999999999865
Q ss_pred e
Q psy16852 523 S 523 (579)
Q Consensus 523 ~ 523 (579)
.
T Consensus 443 ~ 443 (457)
T 1hzh_H 443 H 443 (457)
T ss_dssp G
T ss_pred C
Confidence 4
No 50
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=100.00 E-value=3.9e-32 Score=253.34 Aligned_cols=271 Identities=20% Similarity=0.353 Sum_probs=193.3
Q ss_pred CCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEE-CCEEeccCc---eEEeCCeEEEEEcccCCCCCeEEEEEEEc
Q psy16852 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFK-NGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVN 285 (579)
Q Consensus 210 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~-~~~~i~~~~---~~~~~~~~~l~i~~~~~~d~G~y~C~a~n 285 (579)
.+|.+...+....+.+|+.+.|.|.+.+.|. .+.|++ +|..+.... .........|.|.++..+|+|.|+|.+.|
T Consensus 3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n 81 (291)
T 2wim_A 3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD 81 (291)
T ss_dssp CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEec
Confidence 4567777778888999999999999998775 899999 676665433 22334567899999999999999999999
Q ss_pred CCeeeEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCC--CeEEEEECCCCe
Q psy16852 286 EAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEG--KEVTIYQDTDGL 363 (579)
Q Consensus 286 ~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~~ 363 (579)
..|... +..+.+.+...+.+.... ............+.|.+.|.|.+.+.|++++..+... .++.. ..++
T Consensus 82 ~~g~~~-~~~~~l~v~~~~~~~~~~----~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~--~~~~- 153 (291)
T 2wim_A 82 AKGQTQ-EATVVLEIYQKLTFREVV----SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM--LANN- 153 (291)
T ss_dssp SSSCEE-EEEEEEEEECCCBCCSCC----CSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEE--CTTS-
T ss_pred ccCceE-EEEEEEEecCCcceEeCC----CChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEE--ccCC-
Confidence 887653 223333333322211110 0000111122334577889999999999999887643 33322 2222
Q ss_pred EEEEEcccCCCCCEEEEEEEEcCceeE--EEEEEEEEEecccCCCCCeeecCCC--ceeeecCCCeEEEEEEEeeCCCeE
Q psy16852 364 CKLAISEVFPENAGLYSCTAVNPVGEA--VAAATLAVEEKEESGEAPKFTKPLK--PVIAEAQSPATLKATVTGRPTPSI 439 (579)
Q Consensus 364 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~~~~~~~p~~~~~~~--~~~~~~g~~~~l~C~~~g~p~~~v 439 (579)
.|.|.++..+|+|.|+|.+.|..+.. ...+.+.+.. +|.+..... ...+.+|+.++|.|.+.|.|.|.+
T Consensus 154 -~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~------~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v 226 (291)
T 2wim_A 154 -NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV------PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAI 226 (291)
T ss_dssp -CEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEB------CCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEE
T ss_pred -CEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEecc------CCccccCcccccceecCCCeEEEEEEeecCCCCeE
Confidence 69999999999999999999987543 3445666654 455544333 356788999999999999999999
Q ss_pred EEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEe
Q psy16852 440 CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAEN 519 (579)
Q Consensus 440 ~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 519 (579)
.|+++|..+..+.++.+ .+..+.|.|.++..+|+|.|+|.|.|
T Consensus 227 ~W~~~g~~~~~~~~~~~-------------------------------------~~~~~~L~i~~~~~~d~G~Y~C~a~N 269 (291)
T 2wim_A 227 SWFRNGKLIEENEKYIL-------------------------------------KGSNTELTVRNIINSDGGPYVCRATN 269 (291)
T ss_dssp EEEETTEECCCTTTEEE-------------------------------------CSTTCEEEEESCCSTTCEEEEEEEEE
T ss_pred EEEECCEECcCCccEEE-------------------------------------cCCccEEEEeeCCcccCEEEEEEEEE
Confidence 99999999876655433 12234599999999999999999999
Q ss_pred CCeeEEEEEEEEEe
Q psy16852 520 VAGSVTCTATLSLL 533 (579)
Q Consensus 520 ~~g~~~~~~~l~v~ 533 (579)
..|....++.|.|.
T Consensus 270 ~~G~~~~~~~l~v~ 283 (291)
T 2wim_A 270 KAGEDEKQAFLQVF 283 (291)
T ss_dssp TTEEEEEEEEEEC-
T ss_pred CCCceeeeEEEEEE
Confidence 99999999999985
No 51
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=100.00 E-value=1.3e-31 Score=249.85 Aligned_cols=280 Identities=17% Similarity=0.220 Sum_probs=200.6
Q ss_pred CCceecCCCceEEccCCcEEEEEEEEeec-CCeEEEEE-CCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEE
Q psy16852 105 APKFTKPLKPVIAEAQSPATLKATVTGRP-TPSICWYR-GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~ 182 (579)
++.+...+....+.+|+.+.|.|.+.+.| .+.+.|++ ++..+..................|.|.+++.+|+|.|+|.+
T Consensus 2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~ 81 (291)
T 1qz1_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81 (291)
T ss_dssp CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEE
Confidence 34556667778899999999999998876 58999999 66666543322222222235678999999999999999999
Q ss_pred EcCCcee-EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc--eEE
Q psy16852 183 VNTFGRA-ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD--IET 259 (579)
Q Consensus 183 ~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~--~~~ 259 (579)
.+..|.. .....+.+. .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.... ...
T Consensus 82 ~n~~g~~~~~~~~l~v~-----------~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~ 150 (291)
T 1qz1_A 82 TAEDGTQSEATVNVKIF-----------QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI 150 (291)
T ss_dssp ECTTSCEEEEEEEEEEE-----------CCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEE
T ss_pred EcCCCCeeEEEEEEEee-----------ccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEE
Confidence 9988643 333444432 56677777777788999999999999999999999999998775432 122
Q ss_pred eCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeE
Q psy16852 260 KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLV 339 (579)
Q Consensus 260 ~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i 339 (579)
......|.|.++..+|+|.|+|.|.|..+.......+.+.+...+.+....... ...........+.|.+.|.|.+.+
T Consensus 151 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~--~~~~~~g~~v~l~C~~~g~p~p~i 228 (291)
T 1qz1_A 151 VLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIV--NATANLGQSVTLVCDADGFPEPTM 228 (291)
T ss_dssp ECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEE--EEETTSCCCEEEEEEEEEESCCEE
T ss_pred EccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCccccccccc--ccccccCceEEEEEEEEEeCCCcE
Confidence 233357999999999999999999987654443444444443333332211100 000111223345689999999999
Q ss_pred EEEECCEEccCCC----eEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEe
Q psy16852 340 TWSHDGTPMKEGK----EVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400 (579)
Q Consensus 340 ~W~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 400 (579)
.|+++|..+.... ++... ...+.|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus 229 ~W~~~g~~~~~~~~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 290 (291)
T 1qz1_A 229 SWTKDGEPIENEEEDDEKHIFS---DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290 (291)
T ss_dssp EEEETTEECCCC--CCSSEEEC---TTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEECCEECcCCCCCCcceEEc---CCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence 9999999987664 33321 2234899999999999999999999999999999998864
No 52
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=100.00 E-value=3.9e-34 Score=272.48 Aligned_cols=287 Identities=23% Similarity=0.386 Sum_probs=138.4
Q ss_pred cCCCCccccccCceeeeCCCCEEEEEEEEee-CCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGH-PLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81 (579)
Q Consensus 3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~-~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (579)
++.+|.+. .|.++.+.+|+.++|.|.+.+. |.+.+.|+|+|..+....++.. ....|.|.+++.+|+|.|+|.+
T Consensus 6 ~~p~p~~~-~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~a 80 (334)
T 1ry7_B 6 EVPGPEPG-QQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV----GPQRLQVLNASHEDSGAYSCRQ 80 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCCCC-CcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEe----ccceEEEeecccccCEEEEEEE
Confidence 34445444 4889999999999999999876 5679999999998876554433 3468999999999999999999
Q ss_pred EcCCeeeEEEEEEEEEecccCC----------------CCCceecC----CCceEEccCCcEEEEEEEEeecCCeEEEEE
Q psy16852 82 TNIGGVATCSANLIVLEKEESG----------------EAPKFTKP----LKPVIAEAQSPATLKATVTGRPTPSICWYR 141 (579)
Q Consensus 82 ~~~~g~~~~~~~~~v~~~~~~~----------------~~~~~~~~----~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~ 141 (579)
.|. |.....+.|.|...+... .+|.+..+ .....+.+|+.+.|.|.+.+.|.+.+.|++
T Consensus 81 ~n~-~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~ 159 (334)
T 1ry7_B 81 RLT-QRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK 159 (334)
T ss_dssp ---------------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCB
T ss_pred EeC-CeEEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEE
Confidence 998 766777777776543211 12333321 233678899999999999999999999999
Q ss_pred CCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEec-cCCc
Q psy16852 142 GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVR-PLQA 220 (579)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~-~~~~ 220 (579)
++..+........ .....+...|.|.+++.+|+|.|+|.+.|..|.......+.+.... ..+|.+.. .+..
T Consensus 160 ~~~~~~~~~~~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~-------~~~p~~~~~~~~~ 231 (334)
T 1ry7_B 160 NGREFRGEHRIGG-IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERS-------PHRPILQAGLPAN 231 (334)
T ss_dssp TTBCCCTTSSTTC-CCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCC-------CSSCBCCTTCSCC
T ss_pred CCEECcccccccc-eecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCC-------CCCCceEecCCCc
Confidence 9988765443211 1112334589999999999999999999999887777666665311 11233322 2345
Q ss_pred eeeCCCCeEEEEEEEEccCCCeEEEEE----CCEEeccCce---EE---------eCCeEEEEEcccCCCCCeEEEEEEE
Q psy16852 221 LLVPKDSTVTLEAEYTGTPTPEVKWFK----NGKEIVSKDI---ET---------KDNVTKLVIKQTTKKTTGKYEIRVV 284 (579)
Q Consensus 221 ~~~~~g~~~~l~C~~~~~p~~~v~W~~----~~~~i~~~~~---~~---------~~~~~~l~i~~~~~~d~G~y~C~a~ 284 (579)
..+.+|+.+.|.|.+.+.|.+.+.|++ +|..+..... .. ......|.|.++..+|+|.|+|.|.
T Consensus 232 ~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 311 (334)
T 1ry7_B 232 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAG 311 (334)
T ss_dssp EEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEE
T ss_pred eEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEe
Confidence 668899999999999999999999999 6666543221 00 1122479999999999999999999
Q ss_pred cCCeeeEEEEEEEEEeccc
Q psy16852 285 NEAGEARTSGSVTITVAEA 303 (579)
Q Consensus 285 n~~g~~~~~~~~~v~~~~~ 303 (579)
|..|....++.|.|...+.
T Consensus 312 N~~G~~~~~~~l~V~~~~~ 330 (334)
T 1ry7_B 312 NSIGFSHHSAWLVVLPAEE 330 (334)
T ss_dssp ESSCCEEEEEEEEEECSCC
T ss_pred CCCCeEEEEEEEEEEECCC
Confidence 9999988888877764443
No 53
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=100.00 E-value=6e-31 Score=262.43 Aligned_cols=370 Identities=12% Similarity=0.120 Sum_probs=226.3
Q ss_pred cccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--EE---ec--------------CCCCEEEEEe--CCEEEEE
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--TE---LH--------------ATEHYLITTV--ESVSTLE 65 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~~---~~--------------~~~~~~~~~~--~~~~~L~ 65 (579)
.+..|.++.+.+|++++|.|.+.+.+ ...+.|||+. .. +. ...++.+... ....+|.
T Consensus 4 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 83 (475)
T 1iga_A 4 LLEQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMG 83 (475)
T ss_pred eeccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEE
Confidence 44568889999999999999998754 4689999953 21 10 1234444332 3457899
Q ss_pred EcCCCCCCCEEEEEEEEcCCee------eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC-C-e
Q psy16852 66 IINPTKEDIGVYTCKATNIGGV------ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT-P-S 136 (579)
Q Consensus 66 i~~~~~~d~G~Y~C~~~~~~g~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~-~ 136 (579)
|.+++.+|+|.|+|.+.+..|. ....+.|.|.... ..+|.+.... ...+.+|+.++|.|.+.+. |. + .
T Consensus 84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~-~~~~~~g~~v~L~C~~~g~~P~~p~~ 160 (475)
T 1iga_A 84 LSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSAS--PTSPKVFPLS-LCSTQPDGNVVIACLVQGFFPQEPLS 160 (475)
T ss_pred ECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCC--CcCCeEEecC-ccccCCCCeEEEEEEEeeecCCCceE
Confidence 9999999999999999987652 2234566665321 1233333222 1123689999999999887 55 4 9
Q ss_pred EEEEECCEEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccC--------
Q psy16852 137 ICWYRGKEEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTID-------- 204 (579)
Q Consensus 137 i~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~-------- 204 (579)
|.|++++....... ........++ ...|.|..+..+|+|.|+|.|.|..+. .....+.+.+.....
T Consensus 161 v~W~~~~~~~~~~~-~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~-~~~~~v~l~V~~~~~~~~~~~~~ 238 (475)
T 1iga_A 161 VTWSESGQGVTARN-FPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNP-SQDVTVPCPVPSTPPTPSPSTPP 238 (475)
T ss_pred EEEcCCCcccceEe-CCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCC-ceeeeEecccccCcccccccccc
Confidence 99998874321100 0000000111 246889999999999999999998763 222233321100000
Q ss_pred --CCCccCCCeE-eccCCceeeCCCCeEEEEEEEEccCC---CeEEEEECCEEeccCc----eE----EeCCeEEEEEcc
Q psy16852 205 --KPRVLEAPTI-VRPLQALLVPKDSTVTLEAEYTGTPT---PEVKWFKNGKEIVSKD----IE----TKDNVTKLVIKQ 270 (579)
Q Consensus 205 --~~~~~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~p~---~~v~W~~~~~~i~~~~----~~----~~~~~~~l~i~~ 270 (579)
.... .+|.+ ..++....+.+|+.+.|.|.+.+.++ +.+.| ++..+.... .. .....+.|.|.+
T Consensus 239 ~~~~~~-~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~ 315 (475)
T 1iga_A 239 TPSPSC-CHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCA 315 (475)
T ss_pred cCCCCC-CCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEch
Confidence 0001 23443 33333333678999999999998644 58999 444432211 00 011345799999
Q ss_pred cCCCCCeEEEEEEEcCCeeeEEEEEEEEE-eccceeeeeeeeeeccccCceeeeecCeeEEEeeeCC--CeEEEEECCEE
Q psy16852 271 TTKKTTGKYEIRVVNEAGEARTSGSVTIT-VAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPT--PLVTWSHDGTP 347 (579)
Q Consensus 271 ~~~~d~G~y~C~a~n~~g~~~~~~~~~v~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~--~~i~W~~~~~~ 347 (579)
+..+|+|.|+|.|.|..+.......+.+. +...+.+.+..... ..........+.|.+.|.++ +.|.|+++|..
T Consensus 316 ~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~v~~~~~~~---~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~ 392 (475)
T 1iga_A 316 EPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPS---EELALNELVTLTCLARGFSPKDVLVRWLQGSQE 392 (475)
T ss_pred HHhccCCcEEEEEEcCCCCCceEEEeecCCCCCCCeEEEECCCh---HHhccCCceEEEEEEeeeECCCCEEEEEECCEE
Confidence 99999999999999998875444433321 12233333221110 00112222445699988643 59999999999
Q ss_pred ccCCCeEE--EEEC---CCCe----EEEEEcccCCCCCEEEEEEEEcCcee
Q psy16852 348 MKEGKEVT--IYQD---TDGL----CKLAISEVFPENAGLYSCTAVNPVGE 389 (579)
Q Consensus 348 ~~~~~~~~--~~~~---~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~ 389 (579)
+....... ...+ .+++ +.|.|.....+|.|.|+|.|.|....
T Consensus 393 l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~ 443 (475)
T 1iga_A 393 LPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP 443 (475)
T ss_pred CCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence 87653111 1122 2222 46788888888999999999998654
No 54
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=100.00 E-value=3.5e-35 Score=289.78 Aligned_cols=372 Identities=16% Similarity=0.164 Sum_probs=228.3
Q ss_pred ccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--EEe----c-------------CCCCEEEEEe--CCEEEEEE
Q psy16852 10 IEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--TEL----H-------------ATEHYLITTV--ESVSTLEI 66 (579)
Q Consensus 10 ~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~~~----~-------------~~~~~~~~~~--~~~~~L~i 66 (579)
+..|.++.+.+|++++|.|.+.+.+ .+.+.|||++ ..+ . ...++.+... ++..+|.|
T Consensus 3 l~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 82 (434)
T 1igy_B 3 LQESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHL 82 (434)
T ss_dssp EECCCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEE
T ss_pred eECCCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEE
Confidence 3457788999999999999998753 5689999963 221 0 1234433222 23468999
Q ss_pred cCCCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cCC-eEEEEECCE
Q psy16852 67 INPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP-SICWYRGKE 144 (579)
Q Consensus 67 ~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~ 144 (579)
.+++.+|+|.|+|.+.+..+.....+.|.|.... ..+|.+........+.+|+.++|.|.+.+. |.+ .|.|++++.
T Consensus 83 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~ 160 (434)
T 1igy_B 83 SSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAK--TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL 160 (434)
T ss_dssp CSBCGGGCSEECCCCSSSSCCCCCCEECEECCSC--CBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTB
T ss_pred CCCChHHCEEEEEEEEccccccCCceEEEEccCC--CCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCc
Confidence 9999999999999998854444445567775321 123333322222234789999999999886 665 999999886
Q ss_pred EccCCCCceEEEc-CCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeecc-ccCCC-CccCCCeEeccCCce
Q psy16852 145 EILPDNGHTMEFN-PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKAT-TIDKP-RVLEAPTIVRPLQAL 221 (579)
Q Consensus 145 ~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~-~~~~~-~~~~~p~~~~~~~~~ 221 (579)
.+........... .....+.|.|.++..+| |.|+|.|.|..+.......+.+.... .+... ....+..+..++...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~ 239 (434)
T 1igy_B 161 SSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPK 239 (434)
T ss_dssp CSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHH
T ss_pred CCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCChH
Confidence 4210000000000 00012469999999889 99999999998875443333221000 00000 000122223333222
Q ss_pred e-eCCCCeEEEEEEEEccC----CCeEEEEECCEEeccCce--------EEeCCeEEEEEcccCCCCCeEEEEEEEcCCe
Q psy16852 222 L-VPKDSTVTLEAEYTGTP----TPEVKWFKNGKEIVSKDI--------ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAG 288 (579)
Q Consensus 222 ~-~~~g~~~~l~C~~~~~p----~~~v~W~~~~~~i~~~~~--------~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g 288 (579)
. +.+|+.+.|.|.+.+.+ .+.+.|++++..+..... ......+.|.|.++..+|+|.|+|.|.|..|
T Consensus 240 ~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~ 319 (434)
T 1igy_B 240 DTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAF 319 (434)
T ss_dssp HHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSC
T ss_pred HhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCC
Confidence 2 78899999999999874 348999999977653210 0111235699999999999999999999888
Q ss_pred eeEEEEEEEE--EeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCC--CeEEEEECCEEccCCCeEEEEECCCCe-
Q psy16852 289 EARTSGSVTI--TVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPT--PLVTWSHDGTPMKEGKEVTIYQDTDGL- 363 (579)
Q Consensus 289 ~~~~~~~~~v--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~--~~i~W~~~~~~~~~~~~~~~~~~~~~~- 363 (579)
.......+.+ .+...+.+.+... ....+......+.|.+.|.++ +.|+|+++|..+............++.
T Consensus 320 ~~~~~~~v~~~~~~~~~P~v~~~~~----~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~ 395 (434)
T 1igy_B 320 PAPIEKTISKTKGKPRAPQVYTIPP----PKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSY 395 (434)
T ss_dssp SSCCCCCCCCCCSCCBCCCCEEECC----CSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCE
T ss_pred CCceeEEEeccCCCCcCCEEEEECC----CHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcE
Confidence 6433222222 2222233322211 111112223456799998644 389999999988543221111122332
Q ss_pred ---EEEEEcccCCCCCEEEEEEEEcCce
Q psy16852 364 ---CKLAISEVFPENAGLYSCTAVNPVG 388 (579)
Q Consensus 364 ---~~l~i~~~~~~d~G~Y~C~a~n~~g 388 (579)
+.|.|.....+|+|.|+|.|.|...
T Consensus 396 ~~~s~l~i~~~~~~~~g~YtC~a~n~~l 423 (434)
T 1igy_B 396 FVYSKLNVQKSNWEAGNTFTCSVLHEGL 423 (434)
T ss_dssp EEEEEEEEEHHHHHTTCCEEEEEEETTS
T ss_pred EEEEEEEECchhccCCCEEEEEEEcCCC
Confidence 3577777777889999999999864
No 55
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=100.00 E-value=1e-31 Score=250.25 Aligned_cols=269 Identities=16% Similarity=0.176 Sum_probs=199.0
Q ss_pred CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI 84 (579)
Q Consensus 5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 84 (579)
-+|.+...+..+.+.+|++++|.|.+.+ .+.|++++.... ..........|.|.+++.+|+|.|+|.+.+.
T Consensus 3 p~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~-----~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 73 (289)
T 3ejj_X 3 PAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYW-----TLDPESPGSTLTTRNATFKNTGTYRCTELED 73 (289)
T ss_dssp -CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSS-----EECCCSSCCEEEESSCCGGGCEEEEEECCC-
T ss_pred CCcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCceE-----EEeccCCccEEEEeeeccccCEEEEEEEecc
Confidence 3677777888899999999999999876 599998764321 1222334578999999999999999999988
Q ss_pred CeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCe-EEEEE-CCEEccCCCCceEEEcCCCCe
Q psy16852 85 GGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPS-ICWYR-GKEEILPDNGHTMEFNPTTGE 162 (579)
Q Consensus 85 ~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-i~W~~-~~~~~~~~~~~~~~~~~~~~~ 162 (579)
.+.....+.|.|...+ ..+...+....+.+|+.+.|.|.+.+.+.+. +.|++ ++..+....+..+. . .
T Consensus 74 ~~~~~~~~~l~V~~~~-----~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~--~---~ 143 (289)
T 3ejj_X 74 PMAGSTTIHLYVKDPA-----HSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFS--P---W 143 (289)
T ss_dssp ----CEEEEEEECCSS-----CSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEE--T---T
T ss_pred CCcceeEEEEEEeCCC-----cceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEEC--C---C
Confidence 8877777888886532 1244555778889999999999998766654 99987 55555444443332 1 1
Q ss_pred EEEEECcCCCCCCeEEEEEEE-cCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCC
Q psy16852 163 CVLSISEATPQDEAVYSVKAV-NTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPT 240 (579)
Q Consensus 163 ~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~ 240 (579)
..|.|.++..+|+|.|+|.+. +..+.......+.+... ...+|.+...+....+.+|+.+.|.|.+.+ .|.
T Consensus 144 ~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~-------~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~ 216 (289)
T 3ejj_X 144 RGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRV-------HPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVG 216 (289)
T ss_dssp TEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESS-------CCCCCEEEEESSSEECCSSSCEEEEEEEEESSSC
T ss_pred CCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEEC-------CCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCc
Confidence 359999999999999999999 44444334445554311 124677777777777789999999999998 788
Q ss_pred CeEEEEECCEEeccCceEE-----eCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 241 PEVKWFKNGKEIVSKDIET-----KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299 (579)
Q Consensus 241 ~~v~W~~~~~~i~~~~~~~-----~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~ 299 (579)
+.+.|++++..+....... ......|.|.+++.+|+|.|+|.|.|..|....++.|.+.
T Consensus 217 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~ 280 (289)
T 3ejj_X 217 FNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVV 280 (289)
T ss_dssp CEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC
T ss_pred eEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEE
Confidence 8999999999886543211 1225789999999999999999999999998888776653
No 56
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=100.00 E-value=4.1e-32 Score=252.87 Aligned_cols=263 Identities=16% Similarity=0.204 Sum_probs=196.3
Q ss_pred CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
.-||.|...+.++.+.+|++++|.|.+.+ .+.|+++|..+ . ..... ...|.|.+++.+|+|.|+|.+.|
T Consensus 10 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~----~--~~~~~-~~~L~i~~~~~~d~G~Y~C~~~n 78 (290)
T 2o26_X 10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFN----E--MVENK-KNEWIQEKAEATRTGTYTCSNSN 78 (290)
T ss_dssp --CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSS----C--EEEEC-SSEEEETTCCGGGCEEEEEEESS
T ss_pred CCCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCcce----e--eecCC-CceEEEeccCHHhCeEEEEEeeC
Confidence 56899998899999999999999999976 89999999877 1 11112 27899999999999999999998
Q ss_pred CCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecC-CeEEEE-ECCEEccCCCCceEEEcCCCC
Q psy16852 84 IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT-PSICWY-RGKEEILPDNGHTMEFNPTTG 161 (579)
Q Consensus 84 ~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~-~~~~~~~~~~~~~~~~~~~~~ 161 (579)
|. ...+.|.|...+ ..........+.+|+.+.|.|.+.+ |. +.+.|+ +++..+....+ +.....
T Consensus 79 --g~-~~~~~l~V~~~~------~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~--~~~~~~-- 144 (290)
T 2o26_X 79 --GL-TSSIYVFVRDPA------KLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLT--FVPNPK-- 144 (290)
T ss_dssp --SC-EEEEEEEEECSS------CCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCE--EEEETT--
T ss_pred --Cc-cEEEEEEEeCCC------cccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCc--eeeCCC--
Confidence 43 666777776532 2224455677889999999999985 77 899996 56665544322 222222
Q ss_pred eEEEEECcCCCCCCe-EEEEEEEcCCceeEE-EEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccC
Q psy16852 162 ECVLSISEATPQDEA-VYSVKAVNTFGRAEC-RANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTP 239 (579)
Q Consensus 162 ~~~l~i~~~~~~d~G-~Y~C~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p 239 (579)
..|.|.++..+|+| .|+|.+.|..+.... ...+.+.. ....+|.+...+....+.+|+.+.|.|.+.+.|
T Consensus 145 -~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~-------~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p 216 (290)
T 2o26_X 145 -AGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVRE-------AIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVS 216 (290)
T ss_dssp -TEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEEC-------CCCSCCEEECSCSBCCCCTTCCEEEEEEEEESS
T ss_pred -CCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEe-------CCCCCCccccCCCcceEecCCcEEEEEEEecCC
Confidence 26999999999999 999999998544322 24444431 122567776666666889999999999999999
Q ss_pred CCe-EEEEECCEEe----ccCc---eE---EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 240 TPE-VKWFKNGKEI----VSKD---IE---TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299 (579)
Q Consensus 240 ~~~-v~W~~~~~~i----~~~~---~~---~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~ 299 (579)
.+. +.|++++..+ .... .. .......|.|.++..+|+|.|+|.|.|..|.......|.|.
T Consensus 217 ~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 287 (290)
T 2o26_X 217 TSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287 (290)
T ss_dssp TTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC-
T ss_pred cceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEE
Confidence 985 9999998763 2111 11 22345789999999999999999999999988766666553
No 57
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=100.00 E-value=9.6e-32 Score=253.17 Aligned_cols=271 Identities=15% Similarity=0.217 Sum_probs=195.5
Q ss_pred cccccCceeeeCCCCEEEEEEEEeeCCC-----eeEEEECCEEe-------------cCCCCEEEEEe-----CCEEEEE
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEGHPLP-----TMTWQKDGTEL-------------HATEHYLITTV-----ESVSTLE 65 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~-----~v~W~~~g~~~-------------~~~~~~~~~~~-----~~~~~L~ 65 (579)
++..|.++.+..|++++|.|.+.+.+.+ .+.|+|+|... ....++..... ....+|+
T Consensus 3 vv~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~ 82 (313)
T 4fqp_A 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR 82 (313)
T ss_dssp EEECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEE
T ss_pred EEcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEE
Confidence 5667889999999999999999877654 48999987532 22233322111 1246799
Q ss_pred EcCCCCCCCEEEEEEEEc-CCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECC
Q psy16852 66 IINPTKEDIGVYTCKATN-IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGK 143 (579)
Q Consensus 66 i~~~~~~d~G~Y~C~~~~-~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~ 143 (579)
|.+++.+|+|.|+|++.+ ..+.....+.|.+.. +|.+........+..|+.+.+.|.+ .+.|.+.+.|++++
T Consensus 83 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~------~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~ 156 (313)
T 4fqp_A 83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLA------KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDL 156 (313)
T ss_dssp ECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBB------CCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETT
T ss_pred ECcCChhhCEEEEEEEeeccCcceeeeeeeeecc------CCcceecccceEeecCceEEEEEEccCccCCcEEEeecCC
Confidence 999999999999999864 445666666666653 3344444445556778889999987 47789999999998
Q ss_pred EEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEe-ccC
Q psy16852 144 EEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIV-RPL 218 (579)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~-~~~ 218 (579)
..+..... . .....+ .+.|.|.....+|+|.|+|.|.|..+.......+.+. +..+|.+. ...
T Consensus 157 ~~~~~~~~--~-~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~---------V~~~P~v~~~~~ 224 (313)
T 4fqp_A 157 GGMPNTSQ--V-PGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLT---------VYYPPEVSISGY 224 (313)
T ss_dssp CCEEEEEE--E-ECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECC---------BCEEEEEEEECC
T ss_pred ccccccce--e-eeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecc---------cccCCccccccc
Confidence 76542211 1 111111 2468999999999999999999987765555444443 22455553 333
Q ss_pred CceeeCCCCeEEEEEEEEccCCC-eEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEE
Q psy16852 219 QALLVPKDSTVTLEAEYTGTPTP-EVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVT 297 (579)
Q Consensus 219 ~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~ 297 (579)
....+.+|+.++|.|.+.|+|.+ .+.|+++|..+..... .. +..|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 225 ~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~~-~~--~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 301 (313)
T 4fqp_A 225 DNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAV-AQ--GAQLLIRPVDKPINTTLICNVTNALGARQAELTVQ 301 (313)
T ss_dssp CSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEE-EE--TTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEE
T ss_pred cceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCceE-Ee--CCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEE
Confidence 44557788999999999999998 7999999988765432 11 24699999999999999999999999887777776
Q ss_pred EEe
Q psy16852 298 ITV 300 (579)
Q Consensus 298 v~~ 300 (579)
|..
T Consensus 302 V~~ 304 (313)
T 4fqp_A 302 VKE 304 (313)
T ss_dssp EEC
T ss_pred EEe
Confidence 653
No 58
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=100.00 E-value=1.3e-34 Score=285.61 Aligned_cols=370 Identities=14% Similarity=0.145 Sum_probs=224.2
Q ss_pred CCceEEccCCcEEEEEEEEeec--CCeEEEEECC--EE---cc-C-------------CCCceEEEcCCCCeEEEEECcC
Q psy16852 112 LKPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EE---IL-P-------------DNGHTMEFNPTTGECVLSISEA 170 (579)
Q Consensus 112 ~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~---~~-~-------------~~~~~~~~~~~~~~~~l~i~~~ 170 (579)
+.++.+.+|+.++|.|.+.+.+ .+.|.||+++ .. +. . ..+..+..+...+..+|.|.++
T Consensus 6 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 85 (434)
T 1igy_B 6 SGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSL 85 (434)
T ss_dssp CCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSB
T ss_pred CCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCC
Confidence 3456788999999999998753 6789999863 21 10 0 1122221111234568999999
Q ss_pred CCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCC-eEEEEEC
Q psy16852 171 TPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTP-EVKWFKN 248 (579)
Q Consensus 171 ~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~ 248 (579)
+.+|+|.|+|.+.+..+.......+.|... ...+|.+........+.+|+.++|.|.+.+. |.+ .+.|+++
T Consensus 86 ~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~-------~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~ 158 (434)
T 1igy_B 86 TSDDSAVYYCVREGEVPYWGQGTTVTVSSA-------KTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSG 158 (434)
T ss_dssp CGGGCSEECCCCSSSSCCCCCCEECEECCS-------CCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTT
T ss_pred ChHHCEEEEEEEEccccccCCceEEEEccC-------CCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeC
Confidence 999999999999885433323334444311 1123433322222235789999999999985 776 9999999
Q ss_pred CEEeccC---ce---EEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEe---------ccc-eeeeeeeee
Q psy16852 249 GKEIVSK---DI---ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV---------AEA-ETVMMDVRV 312 (579)
Q Consensus 249 ~~~i~~~---~~---~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~---------~~~-~~~~l~~~~ 312 (579)
+..+... .. ......+.|.|.++..+| |.|+|.|.|..+.......+.+.. ... +.+.+....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~ 237 (434)
T 1igy_B 159 SLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPK 237 (434)
T ss_dssp TBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCC
T ss_pred CcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCC
Confidence 8753110 00 011123568999999889 999999999988754333332210 000 112111100
Q ss_pred eccccCceeeeecCeeEEEeeeC----CCeEEEEECCEEccCCCeEEEEECC----CCeEEEEEcccCCCCCEEEEEEEE
Q psy16852 313 ESHPTASFQWFIHSEPVVVTGKP----TPLVTWSHDGTPMKEGKEVTIYQDT----DGLCKLAISEVFPENAGLYSCTAV 384 (579)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~g~p----~~~i~W~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~a~ 384 (579)
. ...........+.|.+.|.+ .+.+.|++++..+............ ...+.|.|.++..+|+|.|+|.|.
T Consensus 238 ~--~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 315 (434)
T 1igy_B 238 P--KDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVN 315 (434)
T ss_dssp H--HHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBC
T ss_pred h--HHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEE
Confidence 0 00012223344568888884 3589999999876543211111011 123479999999999999999999
Q ss_pred cCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCC
Q psy16852 385 NPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTT 462 (579)
Q Consensus 385 n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~ 462 (579)
|..|.......+.+. .....+|.+...+.......|+.++|.|.+.|.+++ +|.|+++|..+.....
T Consensus 316 n~~~~~~~~~~v~~~--~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~--------- 384 (434)
T 1igy_B 316 SAAFPAPIEKTISKT--KGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKN--------- 384 (434)
T ss_dssp CSSCSSCCCCCCCCC--CSCCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEE---------
T ss_pred CCCCCCceeEEEecc--CCCCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCcee---------
Confidence 998854322222210 011235665533333223457789999999986433 8999999987732110
Q ss_pred CeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCee
Q psy16852 463 GECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523 (579)
Q Consensus 463 ~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 523 (579)
......+.|.|.+. +.|.|.....+|+|.|+|.|.|....
T Consensus 385 -------~~~~~~~~g~~~~~--------------s~l~i~~~~~~~~g~YtC~a~n~~l~ 424 (434)
T 1igy_B 385 -------TQPIMDTDGSYFVY--------------SKLNVQKSNWEAGNTFTCSVLHEGLH 424 (434)
T ss_dssp -------CCCCCCSSSCEEEE--------------EEEEEEHHHHHTTCCEEEEEEETTSG
T ss_pred -------ccceeCCCCcEEEE--------------EEEEECchhccCCCEEEEEEEcCCCC
Confidence 11112334555443 34889888889999999999998653
No 59
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=100.00 E-value=2.6e-29 Score=244.64 Aligned_cols=360 Identities=19% Similarity=0.228 Sum_probs=241.8
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEEecC-----CCCEEEEEeCCEEEEEEcCCCCCCCEEEE
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTELHA-----TEHYLITTVESVSTLEIINPTKEDIGVYT 78 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~~~~-----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 78 (579)
+|.|.. +.+..+.+|+.++|.|.+.|.|.+.|.|+|+ |..+.. ..++.+........|.|.+++.+|+|.|+
T Consensus 1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~ 79 (389)
T 2jll_A 1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD 79 (389)
T ss_dssp CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEE
T ss_pred CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEE
Confidence 577776 7778899999999999999999999999999 888865 45666665567889999999999999999
Q ss_pred EEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcC
Q psy16852 79 CKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP 158 (579)
Q Consensus 79 C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~ 158 (579)
|.|.|..|.....+.|.|..+| .+........+.+|+.+.|.|.+.+.|.+.+.|++++..+.......+....
T Consensus 80 C~a~n~~g~~~~~~~l~V~~~P------~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~ 153 (389)
T 2jll_A 80 CEAASRIGGHQKSMYLDIEYAP------KFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYS 153 (389)
T ss_dssp EEEECSSCEEEEEEEEEEEEEE------EECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEE
T ss_pred EEEEeCCCCcceEEEEEEEeCC------EEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEec
Confidence 9999999988888899987643 4444444456789999999999999999999999999998766543444333
Q ss_pred CCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-
Q psy16852 159 TTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG- 237 (579)
Q Consensus 159 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~- 237 (579)
......|.|.++..+|+|.|+|.|.|..|.......+.+.. ...+|... ......+..+.|.|....
T Consensus 154 ~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~--------~P~~P~~~----~~~~~~~~~~~l~w~~p~~ 221 (389)
T 2jll_A 154 TGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALAD--------VPSSPYGV----KIIELSQTTAKVSFNKPDS 221 (389)
T ss_dssp CSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECC--------CCCCCEEE----EEEEECSSCEEEEEECCSC
T ss_pred cCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecC--------CCCCCcce----EEeeccCCEEEEEEeCCCC
Confidence 44567899999999999999999999999877666555431 11222111 011234577889887422
Q ss_pred ---cCCC--eEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEecc---ceeeeee
Q psy16852 238 ---TPTP--EVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE---AETVMMD 309 (579)
Q Consensus 238 ---~p~~--~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~---~~~~~l~ 309 (579)
.|.. .+.|.+++..... ..........+.|.++...+.|.|+|.|.|..|....+..+.+...+ .....+.
T Consensus 222 ~~g~pi~~y~v~~~~~~~~~~~-~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~~~p~~p~~~ 300 (389)
T 2jll_A 222 HGGVPIHHYQVDVKEVASEIWK-IVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIH 300 (389)
T ss_dssp CTTSCEEEEEEEEEETTCSCCE-EEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCCCCCCCCCCEE
T ss_pred CCCcceEEEEEEEEECCCcccE-EeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecCCCCCCCCccc
Confidence 2222 4678776542110 01112334679999999999999999999999876555444444211 1111222
Q ss_pred eeeeccccCceeeeecCeeEEEeeeCCC--eEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCc
Q psy16852 310 VRVESHPTASFQWFIHSEPVVVTGKPTP--LVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPV 387 (579)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~g~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 387 (579)
..........+.|..... .+.+.. .+.|...+..-. .... .. ......+.|.++.....+.|+..|.|..
T Consensus 301 ~~~~~~~~v~l~W~~p~~----~~~~i~~Y~v~~~~~~~~~~-~~~~--~~-~~~~~~~~i~~L~~~t~Y~~~V~A~n~~ 372 (389)
T 2jll_A 301 GQPSSGKSFKLSITKQDD----GGAPILEYIVKYRSKDKEDQ-WLEK--KV-QGNKDHIILEHLQWTMGYEVQITAANRL 372 (389)
T ss_dssp EEEETTTEEEEEECCCCC----CSSCCCEEEEEEEC-----C-CBCC--EE-CTTCCEEEECSCCTTCEEEEEEEEEC-C
T ss_pred cccCcCCEEEEEEECCCC----CCCcccEEEEEEEeCCCCcc-eeEe--ec-cCCcceEEeCCcCCCCEEEEEEEEEcCC
Confidence 222334445566653210 111222 222322111000 0000 01 1122368889999999999999999999
Q ss_pred eeEEEE
Q psy16852 388 GEAVAA 393 (579)
Q Consensus 388 g~~~~~ 393 (579)
|.+..+
T Consensus 373 G~s~~s 378 (389)
T 2jll_A 373 GYSEPT 378 (389)
T ss_dssp CBCCCE
T ss_pred cCCCce
Confidence 976554
No 60
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=100.00 E-value=1.9e-31 Score=244.63 Aligned_cols=250 Identities=15% Similarity=0.240 Sum_probs=193.1
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCC-eeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLP-TMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI 84 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 84 (579)
+|.|...|.++.+.+|+.++|.|.+.+.|.+ .+.|+++|..+.... ..|.|.+++.+|+|.|+|.+.+.
T Consensus 1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~~----------~~l~i~~~~~~d~G~Y~C~~~~~ 70 (262)
T 3rjd_A 1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST----------PSYRITSASVNDSGEYRCQRGLS 70 (262)
T ss_dssp CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCCS----------SEEEESSCCGGGCEEEEEEESSS
T ss_pred CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeeccC----------CeEEEecCCcccCeEEEEEEecC
Confidence 5889999999999999999999999888877 999999999886542 57999999999999999999876
Q ss_pred CeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEEccCCCCceEEEcCCCCeE
Q psy16852 85 GGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163 (579)
Q Consensus 85 ~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~ 163 (579)
.+.. .+.+.|... + +...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.... ...
T Consensus 71 ~~s~--~~~l~v~~~------~-~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~----------~~~ 131 (262)
T 3rjd_A 71 GRSD--PIQLEIHRG------W-LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFH----------WNS 131 (262)
T ss_dssp CCCC--CEEEEEECS------S-EEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEE----------ECC
T ss_pred Cccc--cEEEEEecc------c-eEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccccC----------CCC
Confidence 5543 455666532 2 2223345567899999999999 677788999999988763211 123
Q ss_pred EEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCC-C-
Q psy16852 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPT-P- 241 (579)
Q Consensus 164 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~- 241 (579)
.|.|.+++.+|+|.|+|.+.+..+.......+.+... ..+|.+...+ ...+.+|+.+.|.|.+.+.|. +
T Consensus 132 ~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~--------~~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~ 202 (262)
T 3rjd_A 132 NLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKEL--------FPAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPG 202 (262)
T ss_dssp CEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECS--------SCCCEEEESS-CSSEETTCCEEEEEECCCCCC---
T ss_pred eEEEEECChhhCEEEEEEEeCCCCccccceEEEeccC--------CCCCeEeecC-ceeecCCCeEEEEeEcccCCCCCC
Confidence 6999999999999999999999876666666666521 1345554444 445788999999999998775 4
Q ss_pred ---eEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeee-EEEEEEEE
Q psy16852 242 ---EVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEA-RTSGSVTI 298 (579)
Q Consensus 242 ---~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~-~~~~~~~v 298 (579)
.+.|++++..+... .....|.|.++..+|+|.|+|.|.|..|.. ..+..+.|
T Consensus 203 ~~~~~~w~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~~~s~~~~l 258 (262)
T 3rjd_A 203 LQLYFSFYMGSKTLRGR-----NTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELEL 258 (262)
T ss_dssp --EEEEEEETTEEEEEE-----ESCCEEEESSCCGGGCEEEEEEEEETTSSCEEECCCEEE
T ss_pred ccEEEEEEeCCcEeccc-----CCCceEEEEEechhhCeEEEEEEEcccCceEEecCCeEE
Confidence 37899999887532 344679999999999999999999999864 33334433
No 61
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.98 E-value=6.2e-32 Score=256.08 Aligned_cols=260 Identities=15% Similarity=0.135 Sum_probs=191.4
Q ss_pred ccCceeeeCCCCEEEEEEEEee---------CCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCE-EEEEEE
Q psy16852 12 KIQPVVSHQEQPALFTCKVEGH---------PLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIG-VYTCKA 81 (579)
Q Consensus 12 ~p~~~~v~~G~~~~l~C~~~~~---------~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~ 81 (579)
....+.+.+|+++.|.|.+.+. |.+.+.|||+|..+....+. .. ...|.|.+++.+|+| .|+|.|
T Consensus 35 ~~~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~---~~--~~~L~i~~v~~~D~Gs~Y~C~a 109 (329)
T 3oq3_B 35 GTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR---VK--NGDLWIANYTSNDSHRRYLCTV 109 (329)
T ss_dssp EEEEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT---EE--TTEEEESSCCGGGGGCCEEEEE
T ss_pred CcceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce---ee--cceEEEcCCChHhCCCcEEEEE
Confidence 3467889999999999999774 45789999999877543332 11 357999999999999 999999
Q ss_pred EcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeec-CCeEEEEECCEEccCCCCceEEEcCCC
Q psy16852 82 TNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP-TPSICWYRGKEEILPDNGHTMEFNPTT 160 (579)
Q Consensus 82 ~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~~~~~~~~~~~~~~~~~~~~ 160 (579)
.|..|.........+... +|.+........+.+|+.+.|.|.+.+.| .+.+.|++++..+..... .+...
T Consensus 110 ~n~~g~~~~~~~~~v~~~-----~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~-~~~~~--- 180 (329)
T 3oq3_B 110 TTKNGDCVQGIVRSHIRK-----PPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGT-KYSQS--- 180 (329)
T ss_dssp ECTTSCEEEEEEEEEECC-----CCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSS-SEEEE---
T ss_pred EeCCCceeeEEEEEEEcC-----CCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCc-eEecC---
Confidence 998876554444444433 23333322233456799999999999999 899999999998854332 22222
Q ss_pred CeEEEEECcCCCCCCeEEEEEEEcC--CceeEEE----EEEEEeeccccCCCCccCCC----eEeccCCceeeCCCCeEE
Q psy16852 161 GECVLSISEATPQDEAVYSVKAVNT--FGRAECR----ANLVLRKATTIDKPRVLEAP----TIVRPLQALLVPKDSTVT 230 (579)
Q Consensus 161 ~~~~l~i~~~~~~d~G~Y~C~~~~~--~~~~~~~----~~~~v~~~~~~~~~~~~~~p----~~~~~~~~~~~~~g~~~~ 230 (579)
...|.|.+++.+|+|.|+|.+.|. .|..... ..+.+. .+| .+. .+....+.+|+.+.
T Consensus 181 -~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~-----------~~~~~~~~~~-~~~~~~v~~G~~~~ 247 (329)
T 3oq3_B 181 -GQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVI-----------PSQDHRFKLI-LDPKINVTIGEPAN 247 (329)
T ss_dssp -TTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEE-----------CCCCCCEEEE-CCSEEEECTTSCEE
T ss_pred -CCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEE-----------CCCCCCCcee-cCCeeEEecCCCEE
Confidence 147999999999999999999986 5443332 334443 222 222 45557789999999
Q ss_pred EEEEEEccC---CC-eEEEEECCEEecc-CceEE-----eC--CeEEEEEcccCCCCCe-EEEEEEEcCCeeeEEEEEEE
Q psy16852 231 LEAEYTGTP---TP-EVKWFKNGKEIVS-KDIET-----KD--NVTKLVIKQTTKKTTG-KYEIRVVNEAGEARTSGSVT 297 (579)
Q Consensus 231 l~C~~~~~p---~~-~v~W~~~~~~i~~-~~~~~-----~~--~~~~l~i~~~~~~d~G-~y~C~a~n~~g~~~~~~~~~ 297 (579)
|.|.+.+.| .+ .+.|+++|..+.. ..... .. ....|.|.+++.+|+| .|+|.|.|..|....++.+.
T Consensus 248 l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~ 327 (329)
T 3oq3_B 248 ITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVV 327 (329)
T ss_dssp EEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEE
T ss_pred EEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEE
Confidence 999999987 67 8999999987532 22111 11 4578999999999999 99999999999888777666
Q ss_pred E
Q psy16852 298 I 298 (579)
Q Consensus 298 v 298 (579)
|
T Consensus 328 v 328 (329)
T 3oq3_B 328 L 328 (329)
T ss_dssp E
T ss_pred e
Confidence 5
No 62
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=99.98 E-value=1.9e-31 Score=264.03 Aligned_cols=344 Identities=13% Similarity=0.145 Sum_probs=208.3
Q ss_pred eecCCCceEEccCCcEEEEEEEEeecC----CeEEEEECC--EEc---c-------CCCCceEEEcCCCCeEEEEECcCC
Q psy16852 108 FTKPLKPVIAEAQSPATLKATVTGRPT----PSICWYRGK--EEI---L-------PDNGHTMEFNPTTGECVLSISEAT 171 (579)
Q Consensus 108 ~~~~~~~~~~~~g~~~~l~C~~~~~p~----~~i~W~~~~--~~~---~-------~~~~~~~~~~~~~~~~~l~i~~~~ 171 (579)
+...+..+.+.+|+.++|.|.+.+.+. +.+.||+++ ..+ . .....++......+...|.|.+++
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 83 (438)
T 1qgc_4 4 LTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVE 83 (438)
T ss_dssp EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCC
T ss_pred eEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCc
Confidence 334456778899999999999987765 489999963 211 0 111122222223456789999999
Q ss_pred CCCCeEEEEEEEcCCcee-EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCC-eEEEEEC
Q psy16852 172 PQDEAVYSVKAVNTFGRA-ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTP-EVKWFKN 248 (579)
Q Consensus 172 ~~d~G~Y~C~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~ 248 (579)
.+|+|.|+|.+.+..+.. .....+.+.. ...+|.+..........+|+.+.|.|.+.+ .|.+ .+.|+++
T Consensus 84 ~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~--------~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~ 155 (438)
T 1qgc_4 84 ADDVATYYCQQSNEVPLTFGAGTKLDLKR--------ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKID 155 (438)
T ss_dssp GGGCEEEEEEECSSTTCCBCCCEEEEECC--------CCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEET
T ss_pred CcCCeeEEEEEecCCCccccCceeEEecC--------CCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEEC
Confidence 999999999999987632 2223444431 113555544333223345889999999987 6777 8999999
Q ss_pred CEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCee
Q psy16852 249 GKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEP 328 (579)
Q Consensus 249 ~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 328 (579)
|..+..... ..........|.|..
T Consensus 156 g~~~~~~~~---------~~~~~~~~~~~~~~~----------------------------------------------- 179 (438)
T 1qgc_4 156 GSERQNGVL---------NSWTDQDSKDSTYSM----------------------------------------------- 179 (438)
T ss_dssp TEEECTTEE---------EEEECCCTTTCCEEE-----------------------------------------------
T ss_pred CEEcCCCce---------eccccccCCCCcEEE-----------------------------------------------
Confidence 988754310 000001111111110
Q ss_pred EEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCC
Q psy16852 329 VVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAP 408 (579)
Q Consensus 329 ~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p 408 (579)
.+.|.|.++..+|+|.|+|.|.|..+.... .+.+... .++
T Consensus 180 ----------------------------------~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~--~~~~~~~----~~~ 219 (438)
T 1qgc_4 180 ----------------------------------SSTLTLTKDEYERHNSYTCEATHKTSTSPI--VKSFNRN----ECE 219 (438)
T ss_dssp ----------------------------------EEEEEEEHHHHHTCCEEEEEEEETTCSSCE--EEEEETT----C-C
T ss_pred ----------------------------------EEEEEEeCcccCCCCeEEEEEEecccCCce--ecccccc----cce
Confidence 015777778888889999999888776422 2222211 122
Q ss_pred eeecCCCceeeecCCCeEEEEEEEeeC--CCeEEEeeC--CEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852 409 KFTKPLKPVIAEAQSPATLKATVTGRP--TPSICWYRG--KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 484 (579)
Q Consensus 409 ~~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~v~W~~~--~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~ 484 (579)
.....+....+.+|+.++|.|.+.|.| .+.+.|+++ +..+. ..+.....++.. .......++|
T Consensus 220 ~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~----~~~~~~~~~~~~-----~~~~~~~~r~---- 286 (438)
T 1qgc_4 220 VMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLE----WVATISSGGTYT-----YYPDSVKGRF---- 286 (438)
T ss_dssp CEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEE----EEEEECTTSCCE-----ECCGGGTTTE----
T ss_pred eEEecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcE----EEEEEeecCCce-----ecCcccCCcE----
Confidence 223334556789999999999999988 679999996 33221 000000000000 0000111222
Q ss_pred ecceeeeeee--CCeeEEEEeecccccceeEEEEEEeCCe-----eEEEEEEEEEeeCCcccccccCCccccCCCceEEe
Q psy16852 485 SSTETKIMTD--GNRSVLLISKITRDQIGDVTCRAENVAG-----SVTCTATLSLLPESEVTDVMESPRFIKTPETAKVM 557 (579)
Q Consensus 485 ~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~~~~~~~v~~~p~~~~~~~~~~~~ 557 (579)
.+..+ .....|.|.+++.+|+|.|+|.|.|..| .....+.|.|... ...+|.+...+....+.
T Consensus 287 -----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~-----~~~~P~v~~~~~~~~~~ 356 (438)
T 1qgc_4 287 -----TISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAA-----KTTPPSVYPLAPGSAAA 356 (438)
T ss_dssp -----EEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSS-----CCBCCEEEEECCCGGGC
T ss_pred -----EEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecC-----CCCCCeEEEcCcccccc
Confidence 12222 3456799999999999999999999544 2223456666421 23466665554445577
Q ss_pred cCCcEEEEEEeccc-eee-cccc
Q psy16852 558 DGQSVLFTAQVGYS-ERL-EIPL 578 (579)
Q Consensus 558 ~g~~~~l~C~~~~~-~~~-~~~~ 578 (579)
.|++++|.|.+.+. |.+ .|.|
T Consensus 357 ~g~~v~L~C~~~g~~P~~~~v~W 379 (438)
T 1qgc_4 357 AASMVTLGCLVKGYFPEPVTVTW 379 (438)
T ss_dssp CSSEEEEEEEEESCBSSCCEEEE
T ss_pred cCCcEEEEEEeccccCCCcEEEE
Confidence 89999999999876 654 7766
No 63
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.98 E-value=9.3e-33 Score=260.62 Aligned_cols=272 Identities=18% Similarity=0.215 Sum_probs=199.0
Q ss_pred ccCceeeeCCCCEEEEEEEEeeC-CCeeEEEECCEEecC--CCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeee
Q psy16852 12 KIQPVVSHQEQPALFTCKVEGHP-LPTMTWQKDGTELHA--TEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA 88 (579)
Q Consensus 12 ~p~~~~v~~G~~~~l~C~~~~~~-~~~v~W~~~g~~~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~ 88 (579)
....+.+.+|+.++|.|.+.+.+ .+.|.|+|+|..+.. ....++.... ..|.|.+++.+|+|.|+|.+.|..|..
T Consensus 11 ~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~--~~L~i~~v~~~D~G~Y~C~a~n~~g~~ 88 (315)
T 1itb_B 11 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK--EKLWFVPAKVEDSGHYYCVVRNSSYCL 88 (315)
T ss_dssp CCCCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECS--SBEECTTCCGGGCSCCEECCCSSSCCC
T ss_pred CceEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccC--CeEEECCCChhhCEEEEEEEeCCceEE
Confidence 34468899999999999998877 679999999875432 1111222222 479999999999999999999988876
Q ss_pred EEEEEEEEEecccCCCCCceecC---CCceEEccCCcEEEEEEE------EeecCCeEEEEECCEEccCCCCceEEEcCC
Q psy16852 89 TCSANLIVLEKEESGEAPKFTKP---LKPVIAEAQSPATLKATV------TGRPTPSICWYRGKEEILPDNGHTMEFNPT 159 (579)
Q Consensus 89 ~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~g~~~~l~C~~------~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~ 159 (579)
.....+.+... +|.+... .....+.+|+.+.|.|.+ .+.|.+.+.|++++..+..........
T Consensus 89 ~~~~~v~v~~~-----~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~--- 160 (315)
T 1itb_B 89 RIKISAKFVEN-----EPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV--- 160 (315)
T ss_dssp CEECCCEEECC-----CTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEE---
T ss_pred EEEEEEEEeCC-----CCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeec---
Confidence 66666665432 2222211 123567889999999998 788889999999999986543322222
Q ss_pred CCeEEEEECcCCCCCCeEEEEEEE-cCCceeEE-EEEEEEeeccccCCCCccCCCeEeccCCc-eeeCCCCeEEEEEEEE
Q psy16852 160 TGECVLSISEATPQDEAVYSVKAV-NTFGRAEC-RANLVLRKATTIDKPRVLEAPTIVRPLQA-LLVPKDSTVTLEAEYT 236 (579)
Q Consensus 160 ~~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~~~~l~C~~~ 236 (579)
...|.|.+++.+|+|.|+|.+. +..|.... ...+.+.... .....+|.+..++.. ..+.+|+.+.|.|.+.
T Consensus 161 --~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~----~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~ 234 (315)
T 1itb_B 161 --KDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLE----ENKPTRPVIVSPANETMEVDLGSQIQLICNVT 234 (315)
T ss_dssp --TTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEEC----CCCCCCCEECSCCSEEEECCSSSCEEEEEEEE
T ss_pred --CceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEec----CCCCCCCEEecCCCCcEEEeCCCcEEEEEEEe
Confidence 1379999999999999999999 67776532 2222221110 011246666655543 4688999999999999
Q ss_pred ccCCCeEEEEECCEEeccCce-------EEe--------CCeEEEEEcccCCCC-CeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 237 GTPTPEVKWFKNGKEIVSKDI-------ETK--------DNVTKLVIKQTTKKT-TGKYEIRVVNEAGEARTSGSVTIT 299 (579)
Q Consensus 237 ~~p~~~v~W~~~~~~i~~~~~-------~~~--------~~~~~l~i~~~~~~d-~G~y~C~a~n~~g~~~~~~~~~v~ 299 (579)
|.|.+.+.|+++|..+..... ... .....|.|.++..+| +|.|+|.|.|..|....++.|.|.
T Consensus 235 g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~ 313 (315)
T 1itb_B 235 GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP 313 (315)
T ss_dssp ECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred cCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence 999999999999999876431 000 123589999999999 999999999999998887777653
No 64
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.98 E-value=4e-29 Score=250.52 Aligned_cols=377 Identities=14% Similarity=0.164 Sum_probs=226.8
Q ss_pred cccCceeeeCCCCEEEEEEEEeeCC----CeeEEEEC--CEE---ec-------------CCCCEEEEEe--CCEEEEEE
Q psy16852 11 EKIQPVVSHQEQPALFTCKVEGHPL----PTMTWQKD--GTE---LH-------------ATEHYLITTV--ESVSTLEI 66 (579)
Q Consensus 11 ~~p~~~~v~~G~~~~l~C~~~~~~~----~~v~W~~~--g~~---~~-------------~~~~~~~~~~--~~~~~L~i 66 (579)
..|..+.+.+|++++|.|.+.+.+. ..+.|||. |.. +. ...++.+... ....+|+|
T Consensus 5 ~qp~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (512)
T 1zvo_C 5 QESGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNL 84 (512)
T ss_pred ECCCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEE
Confidence 4578899999999999999986543 57999995 221 10 1234444332 34689999
Q ss_pred cCCCCCCCEEEEEEEEcCCe-----------e--eEEEEEEEEEecccCCCCCceec-CCCceEEccCCcEEEEEEEEee
Q psy16852 67 INPTKEDIGVYTCKATNIGG-----------V--ATCSANLIVLEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGR 132 (579)
Q Consensus 67 ~~~~~~d~G~Y~C~~~~~~g-----------~--~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~ 132 (579)
.+++.+|+|.|+|.+.+..+ . ....+.|.|...+ ..+|.+.. .+.......|+.++|.|.+.+.
T Consensus 85 ~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~--~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~ 162 (512)
T 1zvo_C 85 RSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAP--TKAPDVFPIISGCRHPKDNSPVVLACLITGY 162 (512)
T ss_pred CcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccC--CcCCeEEeccCCcccccCCCeEEEEEEEEee
Confidence 99999999999999987642 1 1234566775432 12333331 1111101246899999999886
Q ss_pred -cCC-eEEEEECCEEccCCCCceEEEcCC---CCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEE-----------EEE
Q psy16852 133 -PTP-SICWYRGKEEILPDNGHTMEFNPT---TGECVLSISEATPQDEAVYSVKAVNTFGRAECRA-----------NLV 196 (579)
Q Consensus 133 -p~~-~i~W~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~-----------~~~ 196 (579)
|.+ .|+|++++...... ......... ...+.|.|.....+ .|.|+|.|.|..+...... .+.
T Consensus 163 ~P~p~~v~W~~~~~~~~~~-~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~ 240 (512)
T 1zvo_C 163 HPTSVTVTWYMGTQSQPQR-TFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSV 240 (512)
T ss_pred ecCceEEEEEcCcccCceE-ecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEE
Confidence 654 99999965431100 000000100 11246888888777 9999999999887655443 122
Q ss_pred Eeecccc-C---------------------------------C-------CCccCCCeE-eccCCceeeCCCCeEEEEEE
Q psy16852 197 LRKATTI-D---------------------------------K-------PRVLEAPTI-VRPLQALLVPKDSTVTLEAE 234 (579)
Q Consensus 197 v~~~~~~-~---------------------------------~-------~~~~~~p~~-~~~~~~~~~~~g~~~~l~C~ 234 (579)
+...... . . +....+|.+ ..++....+.+|+.++|.|.
T Consensus 241 l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~ 320 (512)
T 1zvo_C 241 PTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCF 320 (512)
T ss_pred EeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEE
Confidence 2110000 0 0 001123443 23333334668999999999
Q ss_pred EEcc-CC-CeEEEEECCEEeccCc----eE-----EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEe---
Q psy16852 235 YTGT-PT-PEVKWFKNGKEIVSKD----IE-----TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV--- 300 (579)
Q Consensus 235 ~~~~-p~-~~v~W~~~~~~i~~~~----~~-----~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~--- 300 (579)
+.+. |+ ..+.|+++|..+.... .. .....+.|.|.....+|.|.|+|.|.|..+... ...+....
T Consensus 321 v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~~~~~~~~~~ 399 (512)
T 1zvo_C 321 VVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RLMALREPAAQ 399 (512)
T ss_pred EeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC-ceeEEeecCCC
Confidence 9985 43 3999999998865221 00 111235689999999999999999999877543 22222211
Q ss_pred -ccceeeeeeeeeeccccCceeeeecC-eeEEEeeeCCC--eEEEEECCEEccCCCeE--EEEECCCCe-----EEEEEc
Q psy16852 301 -AEAETVMMDVRVESHPTASFQWFIHS-EPVVVTGKPTP--LVTWSHDGTPMKEGKEV--TIYQDTDGL-----CKLAIS 369 (579)
Q Consensus 301 -~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~g~p~~--~i~W~~~~~~~~~~~~~--~~~~~~~~~-----~~l~i~ 369 (579)
...+.+.+..... ...... +.|.+.|++++ .+.|+++|.++...... ....+.+++ +.|.|.
T Consensus 400 ~~~~p~v~~~~~~~-------~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~ 472 (512)
T 1zvo_C 400 APVKLSLNLLASSD-------PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVP 472 (512)
T ss_pred CCCCCEEEEEccCc-------CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCCCEEEEEEEEEEC
Confidence 1222333221111 122234 56999986543 68999999998765321 122334443 467788
Q ss_pred ccCCCCCEEEEEEEEcCceeEE--EEEEEEEE
Q psy16852 370 EVFPENAGLYSCTAVNPVGEAV--AAATLAVE 399 (579)
Q Consensus 370 ~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~v~ 399 (579)
....+|.|.|+|.|.|...... ....+.|.
T Consensus 473 ~~~~~~~g~YtC~v~h~~l~~~~~~~~~~~v~ 504 (512)
T 1zvo_C 473 APPSPQPATYTCVVSHEDSRTLLNASRSLEVS 504 (512)
T ss_pred chhcCCCCeEEEEEEecCCCCceEEEEEEEec
Confidence 7777889999999999866433 33344443
No 65
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.97 E-value=5.2e-29 Score=249.68 Aligned_cols=377 Identities=18% Similarity=0.197 Sum_probs=223.3
Q ss_pred CCceEEccCCcEEEEEEEEeecC----CeEEEEECC--EE---cc-------------CCCCceEEEcCCCCeEEEEECc
Q psy16852 112 LKPVIAEAQSPATLKATVTGRPT----PSICWYRGK--EE---IL-------------PDNGHTMEFNPTTGECVLSISE 169 (579)
Q Consensus 112 ~~~~~~~~g~~~~l~C~~~~~p~----~~i~W~~~~--~~---~~-------------~~~~~~~~~~~~~~~~~l~i~~ 169 (579)
+..+.+.+|+.++|.|.+.+.+. ..+.||+.. .. +. ...++.+..+...+..+|.|.+
T Consensus 7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 86 (512)
T 1zvo_C 7 SGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLRS 86 (512)
T ss_pred CCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEECc
Confidence 45677889999999999976543 689999852 21 10 0123333333344568999999
Q ss_pred CCCCCCeEEEEEEEcCCc-----------e--eEEEEEEEEeeccccCCCCccCCCeEec-cCCceeeCCCCeEEEEEEE
Q psy16852 170 ATPQDEAVYSVKAVNTFG-----------R--AECRANLVLRKATTIDKPRVLEAPTIVR-PLQALLVPKDSTVTLEAEY 235 (579)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~-----------~--~~~~~~~~v~~~~~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~ 235 (579)
++.+|+|.|+|.+.+..+ . ......+.|... ...+|.+.. .+.......++.+.|.|.+
T Consensus 87 v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~-------~~~~P~i~~~~~~~~~~~~~~~v~L~C~~ 159 (512)
T 1zvo_C 87 MSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSA-------PTKAPDVFPIISGCRHPKDNSPVVLACLI 159 (512)
T ss_pred CCHHHCEEEEEEEECCCCccccccccccccccccCceEEEeccc-------CCcCCeEEeccCCcccccCCCeEEEEEEE
Confidence 999999999999987642 0 011233444311 012343331 1111102246899999999
Q ss_pred Ecc-CCC-eEEEEECCEEec--cCc-eE----EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEE-----------E
Q psy16852 236 TGT-PTP-EVKWFKNGKEIV--SKD-IE----TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSG-----------S 295 (579)
Q Consensus 236 ~~~-p~~-~v~W~~~~~~i~--~~~-~~----~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~-----------~ 295 (579)
.+. |.+ .+.|++++.... ... .. .....+.|.|.....+ .|.|+|.|.|..+...... .
T Consensus 160 ~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~ 238 (512)
T 1zvo_C 160 TGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQAS 238 (512)
T ss_pred EeeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCE
Confidence 986 765 899999764321 000 00 1112356888888777 9999999999888765444 2
Q ss_pred EEEEeccc--------------------------------------------------eeeeeeeeeeccccC-ceeeee
Q psy16852 296 VTITVAEA--------------------------------------------------ETVMMDVRVESHPTA-SFQWFI 324 (579)
Q Consensus 296 ~~v~~~~~--------------------------------------------------~~~~l~~~~~~~~~~-~~~~~~ 324 (579)
+.|.+.+. +.+.+ ...... ......
T Consensus 239 v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~----~~p~~~~~~~g~~ 314 (512)
T 1zvo_C 239 SVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYL----LTPAVQDLWLRDK 314 (512)
T ss_pred EEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEE----ECCChHHhccCCc
Confidence 23322111 11111 110101 112344
Q ss_pred cCeeEEEeeeCC--CeEEEEECCEEccCCCeE-EEEECCCCe----EEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEE
Q psy16852 325 HSEPVVVTGKPT--PLVTWSHDGTPMKEGKEV-TIYQDTDGL----CKLAISEVFPENAGLYSCTAVNPVGEAVAAATLA 397 (579)
Q Consensus 325 ~~~~~~~~g~p~--~~i~W~~~~~~~~~~~~~-~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 397 (579)
..+.|.+.|+++ ..|+|+++|..+...... ......+++ +.|.|.....+|.|.|+|.|.|..+... ...+.
T Consensus 315 ~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~~~~ 393 (512)
T 1zvo_C 315 ATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RLMAL 393 (512)
T ss_pred eEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC-ceeEE
Confidence 566799988744 399999999986622111 112222332 4699999999999999999999877543 22222
Q ss_pred EEecccCCCCCeeecCCCceeeecCCCeE-EEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccC
Q psy16852 398 VEEKEESGEAPKFTKPLKPVIAEAQSPAT-LKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATP 474 (579)
Q Consensus 398 v~~~~~~~~~p~~~~~~~~~~~~~g~~~~-l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~ 474 (579)
.........+|.+...+... .|+.+. |.|.+.|++++ .|.|+|+|..+..+..... ....
T Consensus 394 ~~~~~~~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~--------------~~~~ 456 (512)
T 1zvo_C 394 REPAAQAPVKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPA--------------RPPP 456 (512)
T ss_pred eecCCCCCCCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCcccccc--------------ceeE
Confidence 21100001245554322222 789999 99999986554 6899999998865321100 0011
Q ss_pred CCcee-EEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 475 QDEAV-YSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 475 ~d~g~-y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
...|. |.. .+.|.|.....+|.|.|+|.|.|........+...+
T Consensus 457 ~~dg~~~~~--------------~s~L~v~~~~~~~~g~YtC~v~h~~l~~~~~~~~~~ 501 (512)
T 1zvo_C 457 QPGSTTFWA--------------WSVLRVPAPPSPQPATYTCVVSHEDSRTLLNASRSL 501 (512)
T ss_pred CCCCCEEEE--------------EEEEEECchhcCCCCeEEEEEEecCCCCceEEEEEE
Confidence 11121 322 234888888888899999999999765444444443
No 66
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.97 E-value=9.9e-33 Score=263.29 Aligned_cols=277 Identities=19% Similarity=0.259 Sum_probs=207.6
Q ss_pred CCCccccccCceeeeCCCCEEEEEEEE-------eeCCCeeEEEECCEEe--cCCCCEEEEEeCCEEEEEEcCCCCCCCE
Q psy16852 5 LAPRFIEKIQPVVSHQEQPALFTCKVE-------GHPLPTMTWQKDGTEL--HATEHYLITTVESVSTLEIINPTKEDIG 75 (579)
Q Consensus 5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~-------~~~~~~v~W~~~g~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G 75 (579)
-.|.|...|.++.+.+|++++|.|.+. +.|.+.|.|+++|..+ ......++.... ..|.|.+++.+|+|
T Consensus 17 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~--~~L~i~~v~~~D~G 94 (339)
T 3o4o_C 17 SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQD--GALWLLPALQEDSG 94 (339)
T ss_dssp -CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEET--TEEEESSBCTTCCE
T ss_pred hhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeC--CeEEECCCCcccCE
Confidence 468899999999999999999999997 7888899999999874 333233333333 47999999999999
Q ss_pred EEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEE-----EEeecCCeEEEEECCEEccCCC
Q psy16852 76 VYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKAT-----VTGRPTPSICWYRGKEEILPDN 150 (579)
Q Consensus 76 ~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~-----~~~~p~~~i~W~~~~~~~~~~~ 150 (579)
.|+|.+.|..|.....+.|.|...+.. .......+..+.+|+.+.|.|. +.+.|.+.+.|++++..+....
T Consensus 95 ~Y~C~~~n~~g~~~~~~~l~V~~~~~~----~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~ 170 (339)
T 3o4o_C 95 TYVCTTRNASYCDKMSIELRVFENTDA----FLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDN 170 (339)
T ss_dssp EEECCEEETTEEEEEEEEEEEECSCGG----GHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTC
T ss_pred EEEEEEECCcceEEEEEEEEEEcCCCc----cccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCC
Confidence 999999999998888888888764321 1111223346789999999999 7888999999999998876543
Q ss_pred CceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCce----eEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCC
Q psy16852 151 GHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGR----AECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKD 226 (579)
Q Consensus 151 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 226 (579)
.. +.... +...|.|.++..+|+|.|+|.+.|..|. ......+.+.... ...+|.+..++....+.+|
T Consensus 171 ~~-~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~------~~~~P~i~~~~~~~~v~~G 241 (339)
T 3o4o_C 171 EK-FLSVR--GTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKK------EETIPVIISPLKTISASLG 241 (339)
T ss_dssp SS-EEECT--TSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCC------CCCCCEECCCSCCCCCCCC
T ss_pred ce-eEEcC--CcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCC------CCCCCEEecCCceeEeccC
Confidence 32 22222 2247999999999999999999998773 3444555554211 1135666666666678899
Q ss_pred CeEEEEEEE---EccC-CCeEEEEECCEEeccCc----------eEEe-CC----eEEEEEcccCCCCC-eEEEEEEEcC
Q psy16852 227 STVTLEAEY---TGTP-TPEVKWFKNGKEIVSKD----------IETK-DN----VTKLVIKQTTKKTT-GKYEIRVVNE 286 (579)
Q Consensus 227 ~~~~l~C~~---~~~p-~~~v~W~~~~~~i~~~~----------~~~~-~~----~~~l~i~~~~~~d~-G~y~C~a~n~ 286 (579)
+.+.|.|.+ .+.| .+.+.|++++..+.... .... .+ ...|.|.++..+|. |.|+|.|.|.
T Consensus 242 ~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~ 321 (339)
T 3o4o_C 242 SRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNT 321 (339)
T ss_dssp SCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEET
T ss_pred CCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEec
Confidence 999999999 7888 77999999997764321 1111 11 12799999999997 9999999999
Q ss_pred CeeeEEEEEE
Q psy16852 287 AGEARTSGSV 296 (579)
Q Consensus 287 ~g~~~~~~~~ 296 (579)
.|.....+.+
T Consensus 322 ~G~~~~~~~~ 331 (339)
T 3o4o_C 322 LSFQTLRTTV 331 (339)
T ss_dssp TEEECCBCCC
T ss_pred cCceEEEEEh
Confidence 9987655444
No 67
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.97 E-value=1e-31 Score=255.52 Aligned_cols=274 Identities=16% Similarity=0.214 Sum_probs=191.9
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEee----CCCeeEEEECC--EE-------------e--cCCCCEEEE-EeCCEEE
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGH----PLPTMTWQKDG--TE-------------L--HATEHYLIT-TVESVST 63 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~----~~~~v~W~~~g--~~-------------~--~~~~~~~~~-~~~~~~~ 63 (579)
|+.++..|.++.+.+|++++|.|.+.+. +.+.+.|++++ .. + ....++.+. ......+
T Consensus 14 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 93 (331)
T 3u83_A 14 PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGT 93 (331)
T ss_dssp -------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCC
T ss_pred CcceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCce
Confidence 5556677888999999999999998775 34579999954 11 1 112233222 1223567
Q ss_pred EEEcCCCCCCCEEEEEE-EEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccC---CcEEEEEE-EEeecCCeEE
Q psy16852 64 LEIINPTKEDIGVYTCK-ATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ---SPATLKAT-VTGRPTPSIC 138 (579)
Q Consensus 64 L~i~~~~~~d~G~Y~C~-~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g---~~~~l~C~-~~~~p~~~i~ 138 (579)
|.|.+++.+|+|.|+|. +.+..+.....+.+.|...+. ..+........+.+| +.+.|.|. ..+.|.+.+.
T Consensus 94 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~----~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~ 169 (331)
T 3u83_A 94 IRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPT----NWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVS 169 (331)
T ss_dssp EEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCE----EEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEE
T ss_pred EEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCc----ceeecCCCceeecCCCccceEEEEEEecCCcCCceEE
Confidence 99999999999999998 556667777888888876421 112224556677788 77999998 7889999999
Q ss_pred EEECCEEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeE
Q psy16852 139 WYRGKEEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTI 214 (579)
Q Consensus 139 W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~ 214 (579)
|++++..... .......++ ...|.|..+..+|+|.|+|.+.|..+.......+.+. .+|.+
T Consensus 170 W~~~~~~~~~----~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~-----------~~P~~ 234 (331)
T 3u83_A 170 WETRLKGEAE----YQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQ-----------YEPEV 234 (331)
T ss_dssp EEESSCCEEE----EEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEE-----------EEEEE
T ss_pred EEcCCCCccc----cceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEe-----------cCCeE
Confidence 9995321110 000000111 2469999999999999999999998876665555543 34444
Q ss_pred e-ccCCceeeCCCCeEEEEEEEEccCCCe-EEEEECCEEeccCceEEeCCeEEEEEc-ccCCCCCeEEEEEEEcCCeeeE
Q psy16852 215 V-RPLQALLVPKDSTVTLEAEYTGTPTPE-VKWFKNGKEIVSKDIETKDNVTKLVIK-QTTKKTTGKYEIRVVNEAGEAR 291 (579)
Q Consensus 215 ~-~~~~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~i~~~~~~~~~~~~~l~i~-~~~~~d~G~y~C~a~n~~g~~~ 291 (579)
. .+.....+.+|+.+.|.|.+.+.|.+. +.|++++..+.... .. ....|.|. ++..+|+|.|+|.|.|..|...
T Consensus 235 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~-~~--~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~ 311 (331)
T 3u83_A 235 TIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGV-EA--QNRTLFFKGPINYSLAGTYICEATNPIGTRS 311 (331)
T ss_dssp EEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE-EE--ETTEEEECSCCCGGGCEEEEEEEEETTEEEE
T ss_pred EEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccc-ee--cCcEEEEeCCCccccCeEEEEEEEeccccce
Confidence 3 333445588899999999999999997 99999998776542 11 22469999 8999999999999999999887
Q ss_pred EEEEEEEEec
Q psy16852 292 TSGSVTITVA 301 (579)
Q Consensus 292 ~~~~~~v~~~ 301 (579)
.++.|.|...
T Consensus 312 ~~~~l~V~~~ 321 (331)
T 3u83_A 312 GQVEVNITEA 321 (331)
T ss_dssp EEEEECCBC-
T ss_pred EEEEEEEecc
Confidence 7776666533
No 68
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.97 E-value=8.8e-31 Score=248.23 Aligned_cols=270 Identities=15% Similarity=0.232 Sum_probs=181.6
Q ss_pred CccccccCceeeeCCCCEEEEEEEEee-CCCeeEEEECCEEec---------CCCCEEEEEe-----CCEEEEEEcCCCC
Q psy16852 7 PRFIEKIQPVVSHQEQPALFTCKVEGH-PLPTMTWQKDGTELH---------ATEHYLITTV-----ESVSTLEIINPTK 71 (579)
Q Consensus 7 p~~~~~p~~~~v~~G~~~~l~C~~~~~-~~~~v~W~~~g~~~~---------~~~~~~~~~~-----~~~~~L~i~~~~~ 71 (579)
..|+..|.++.+.+|++++|.|.+.+. |.+.|.|||++.... ...++..... .....|.|.+++.
T Consensus 4 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~ 83 (327)
T 2wng_A 4 LQVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITP 83 (327)
T ss_dssp CCEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCG
T ss_pred eEEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCcc
Confidence 457778899999999999999999887 778999999875321 0112222111 3456899999999
Q ss_pred CCCEEEEEEEEcCCeee-----EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCC--eEEEEECCE
Q psy16852 72 EDIGVYTCKATNIGGVA-----TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKE 144 (579)
Q Consensus 72 ~d~G~Y~C~~~~~~g~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~ 144 (579)
+|+|.|+|.+.|..+.. ...+.|.|...+ .+|.+. .+ ...+.+|+.+.|.|.+.+.|++ .+.|++++.
T Consensus 84 ~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p---~~p~i~-~~-~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~ 158 (327)
T 2wng_A 84 ADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKP---SAPVVS-GP-AARATPQHTVSFTCESHGFSPRDITLKWFKNGN 158 (327)
T ss_dssp GGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCC---CCCEEE-CC-SSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred ccCeEEEEEeecCCCcceeEeecCcEEEEEEecC---CCceee-cc-ccccCCCCEEEEEEEEeCccCCCcEEEEEECCE
Confidence 99999999999876531 134677777653 233343 22 3557889999999999988875 999999998
Q ss_pred EccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCcee-EEEEEEEEeeccccCCCCccCCCeEeccCC
Q psy16852 145 EILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRA-ECRANLVLRKATTIDKPRVLEAPTIVRPLQ 219 (579)
Q Consensus 145 ~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~ 219 (579)
.+..... .......++ ...|.|.....+|.|.|+|.+.|..+.. .......+.. .+..+|.+...+.
T Consensus 159 ~l~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~-------~v~~~P~i~~~~~ 230 (327)
T 2wng_A 159 ELSDFQT-NVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSE-------TIRVPPTLEVTQQ 230 (327)
T ss_dssp ECCCEEE-EEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGG-------TBCBCCEEEEEEE
T ss_pred Ecccccc-ccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEecc-------ccCCCCEEEEecC
Confidence 8764321 111111111 2357788777778899999999987652 2222222211 1235666654433
Q ss_pred ceeeCCCCeEEEEEEEEcc-CCC-eEEEEECCEEeccCc---eEEeC-C----eEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852 220 ALLVPKDSTVTLEAEYTGT-PTP-EVKWFKNGKEIVSKD---IETKD-N----VTKLVIKQTTKKTTGKYEIRVVNEAGE 289 (579)
Q Consensus 220 ~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~i~~~~---~~~~~-~----~~~l~i~~~~~~d~G~y~C~a~n~~g~ 289 (579)
. +.+|+.+.|.|.+.+. |++ .+.|+++|+.+.... ..... + ...|.|..+..+|+|.|+|.|.|..+.
T Consensus 231 ~--~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~ 308 (327)
T 2wng_A 231 P--VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQP 308 (327)
T ss_dssp C--CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCC
T ss_pred C--cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCC
Confidence 3 7789999999999985 444 899999999886431 11111 1 256889999999999999999999986
Q ss_pred eE
Q psy16852 290 AR 291 (579)
Q Consensus 290 ~~ 291 (579)
..
T Consensus 309 ~~ 310 (327)
T 2wng_A 309 AV 310 (327)
T ss_dssp CE
T ss_pred Cc
Confidence 54
No 69
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.97 E-value=1.4e-32 Score=261.76 Aligned_cols=286 Identities=21% Similarity=0.291 Sum_probs=135.1
Q ss_pred CCceeeCCCCeEEEEEEEEcc-CCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEE
Q psy16852 218 LQALLVPKDSTVTLEAEYTGT-PTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSV 296 (579)
Q Consensus 218 ~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~ 296 (579)
+....+.+|+.+.|.|.+.+. |.+.+.|+++|..+..... .......|.|.+++.+|+|.|+|.|.|. |.....+.+
T Consensus 15 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~~~l 92 (334)
T 1ry7_B 15 QEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSER-VLVGPQRLQVLNASHEDSGAYSCRQRLT-QRVLCHFSV 92 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCccc-EEeccceEEEeecccccCEEEEEEEEeC-CeEEEEEEE
Confidence 556678899999999999886 5679999999988865431 1224568999999999999999999998 665555555
Q ss_pred EEEeccce-------------------eeeeeee-eeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEE
Q psy16852 297 TITVAEAE-------------------TVMMDVR-VESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTI 356 (579)
Q Consensus 297 ~v~~~~~~-------------------~~~l~~~-~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~ 356 (579)
.|...+.. +...... ...............+.|.+.|.|.+.+.|++++..+........
T Consensus 93 ~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~ 172 (334)
T 1ry7_B 93 RVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG 172 (334)
T ss_dssp --------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTC
T ss_pred EEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccc
Confidence 55432210 0000000 000000001122234468888999999999999998876543211
Q ss_pred EECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeec-CCCceeeecCCCeEEEEEEEeeC
Q psy16852 357 YQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGRP 435 (579)
Q Consensus 357 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p 435 (579)
.........|.|.++..+|+|.|+|.|.|..|.....+.|.|...+. .+|.+.. .+....+..|+.++|.|.+.|.|
T Consensus 173 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~--~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p 250 (334)
T 1ry7_B 173 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP--HRPILQAGLPANQTAVLGSDVEFHCKVYSDA 250 (334)
T ss_dssp CCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCC--SSCBCCTTCSCCEEEESSCCEEECCCCBCSS
T ss_pred eecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCC--CCCceEecCCCceEEeCCCCEEEEEEEecCC
Confidence 11122334899999999999999999999999988888888876431 2344443 34567789999999999999999
Q ss_pred CCeEEEee----CCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccce
Q psy16852 436 TPSICWYR----GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIG 511 (579)
Q Consensus 436 ~~~v~W~~----~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 511 (579)
.|.+.|++ +|..+..+.+.........+ ....++..+.|.|.+++.+|+|
T Consensus 251 ~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~L~i~~v~~~d~G 304 (334)
T 1ry7_B 251 QPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAG--------------------------ANTTDKELEVLSLHNVTFEDAG 304 (334)
T ss_dssp CEEEEEEECCCGGGCSBCTTSSBCCCCCCCSS--------------------------CSCSCTTCCCEEECSCCTTSCS
T ss_pred CCeEEEEECCcCCCccccCCCCeeEEEeecCc--------------------------cccccccccEEEEccCCHHHCE
Confidence 99999999 66666544321110000000 0001223456999999999999
Q ss_pred eEEEEEEeCCeeEEEEEEEEEe
Q psy16852 512 DVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 512 ~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.|+|.|.|..|....++.|.|.
T Consensus 305 ~Y~C~a~N~~G~~~~~~~l~V~ 326 (334)
T 1ry7_B 305 EYTCLAGNSIGFSHHSAWLVVL 326 (334)
T ss_dssp EEEEEEEESSCCEEEEEEEEEE
T ss_pred EEEEEEeCCCCeEEEEEEEEEE
Confidence 9999999999999999999987
No 70
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.97 E-value=4.1e-30 Score=242.26 Aligned_cols=267 Identities=19% Similarity=0.228 Sum_probs=191.0
Q ss_pred eeeCCCCeEEEEEEEE-ccCCCeEEEEECCEEeccCc---eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEE
Q psy16852 221 LLVPKDSTVTLEAEYT-GTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSV 296 (579)
Q Consensus 221 ~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~i~~~~---~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~ 296 (579)
..+.+|+.+.|.|... +.|.+.+.|++++..+.... .........|.|.+++.+|+|.|+|.|.|..|... +..+
T Consensus 11 ~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~l 89 (312)
T 2y23_A 11 VNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYLI 89 (312)
T ss_dssp EEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EEEE
T ss_pred EEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EEEE
Confidence 4578899999998875 47888999999999987554 23344568999999999999999999999887543 4443
Q ss_pred EEEecc----------ceeeeeee--eeeccccCceeeeecCeeEEEe-eeCCCeEEEEECCEEccCCCeEEEEEC-CCC
Q psy16852 297 TITVAE----------AETVMMDV--RVESHPTASFQWFIHSEPVVVT-GKPTPLVTWSHDGTPMKEGKEVTIYQD-TDG 362 (579)
Q Consensus 297 ~v~~~~----------~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~-g~p~~~i~W~~~~~~~~~~~~~~~~~~-~~~ 362 (579)
.|.... .+.+.+.. ..... ......+.|.+. +.|.+.+.|++++..+....++.+..+ ..+
T Consensus 90 ~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~-----~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~ 164 (312)
T 2y23_A 90 DEEELKRLLALSHEHKFPTVPVKSELAVEIL-----EKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTG 164 (312)
T ss_dssp CHHHHHHHHHHHHHHHSCBCCEEEEEEEEEC-----SSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTT
T ss_pred EEeeeeeeecccccCCCCccccccCCceEEe-----eCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCC
Confidence 332100 12111111 11111 111223458888 889999999999999988776665543 356
Q ss_pred eEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecc---------------cCCCCCeeecCCCceeeecCCCeEE
Q psy16852 363 LCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKE---------------ESGEAPKFTKPLKPVIAEAQSPATL 427 (579)
Q Consensus 363 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~---------------~~~~~p~~~~~~~~~~~~~g~~~~l 427 (579)
...|.|.++..+|+|.|+|.|.+..+....... +.... ....+|.+..+.. ..+.+|+.++|
T Consensus 165 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~v~~G~~~~l 241 (312)
T 2y23_A 165 IIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVV--LVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS-WEVTGECNVLL 241 (312)
T ss_dssp EEEEEESCCCGGGCEEEEEEEESSSCEEEEEEE--ECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEE-EEEETTTEEEE
T ss_pred EEEEEEccCCcccCEeEEEEEEeCCceEEEEEE--EcchhhhhhcccccccccchhhccCCceeecce-EEEeCCCEEEE
Confidence 678999999999999999999876554443333 21000 0012455554333 67889999999
Q ss_pred EEEEEeeCCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecc
Q psy16852 428 KATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKIT 506 (579)
Q Consensus 428 ~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~ 506 (579)
.|.+.|.|.| .+.|++++..+..+.++.+. +..+.|.|.+++
T Consensus 242 ~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~-------------------------------------~~~~~L~I~~v~ 284 (312)
T 2y23_A 242 KCKVANIKKETHIVWYKDEREISVDEKHDFK-------------------------------------DGICTLLITEFS 284 (312)
T ss_dssp EEEEESCCSSCEEEEEETTEEEEEECCC-----------------------------------------CEEEEEECSCS
T ss_pred EEEEcCCCCCCEEEEeeCCEECCCCCcEEEE-------------------------------------CCEEEEEECcCC
Confidence 9999999998 99999999988654443321 123569999999
Q ss_pred cccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 507 RDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 507 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.+|+|.|+|.|.|..|....++.|.|+
T Consensus 285 ~~d~G~Y~C~a~N~~G~~~~~~~l~i~ 311 (312)
T 2y23_A 285 KKDAGIYEVILKDDRGKDKSRLKLVDE 311 (312)
T ss_dssp GGGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred HHHCEEEEEEEEcCCCceeeeeEEEec
Confidence 999999999999999999999998763
No 71
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.97 E-value=3.6e-31 Score=253.54 Aligned_cols=274 Identities=18% Similarity=0.203 Sum_probs=169.5
Q ss_pred ccCceeeeCCCCEEEEEEEEeeCC-----------CeeEEEECCEE------ec-CCCCEEEEEeCCEEEEEEcCCCCCC
Q psy16852 12 KIQPVVSHQEQPALFTCKVEGHPL-----------PTMTWQKDGTE------LH-ATEHYLITTVESVSTLEIINPTKED 73 (579)
Q Consensus 12 ~p~~~~v~~G~~~~l~C~~~~~~~-----------~~v~W~~~g~~------~~-~~~~~~~~~~~~~~~L~i~~~~~~d 73 (579)
.+.++.+.+|+++.|.|.+.+.|. +.+.|||++.. +. .....++.... ..|.|.+++.+|
T Consensus 13 ~~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~--~~L~i~~~~~~D 90 (349)
T 4dep_C 13 TMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEK--DVLWFRPTLLND 90 (349)
T ss_dssp CCCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEET--TEEEESSCCGGG
T ss_pred eeeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecC--CEEEEccCChhh
Confidence 467789999999999999987553 89999998842 21 01112222222 479999999999
Q ss_pred CEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-----EeecCCeEEEEECCEEccC
Q psy16852 74 IGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-----TGRPTPSICWYRGKEEILP 148 (579)
Q Consensus 74 ~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-----~~~p~~~i~W~~~~~~~~~ 148 (579)
+|.|+|.|.|..+.....+.+.|..++.. .+.....+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+..
T Consensus 91 ~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~--~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~ 168 (349)
T 4dep_C 91 TGNYTCMLRNTTYCSKVAFPLEVVQKDSC--FNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQN 168 (349)
T ss_dssp CEEEEEEEECSSCEEEEEEEEEEECCCTT--SCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCS
T ss_pred CEEEEEEEecCCceEEEEEEEEEecCCcc--cCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCC
Confidence 99999999999888888888888764321 1111122345578899999999974 6678899999999998854
Q ss_pred CCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCC-cee---EEEEEEEEeeccccCCCCccCCCeEeccCCce--e
Q psy16852 149 DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF-GRA---ECRANLVLRKATTIDKPRVLEAPTIVRPLQAL--L 222 (579)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~~---~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~--~ 222 (579)
.. .+.... ..|.|.+++.+|+|.|+|.+.|.. |.. .....+.+.... ....+|.+..+.... .
T Consensus 169 ~~--~~~~~~----~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~-----~~~~~p~i~~~~~~~~~~ 237 (349)
T 4dep_C 169 FN--NVIPEG----MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSP-----KNAVPPVIHSPNDHVVYE 237 (349)
T ss_dssp CS--SEEEET----TEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCG-----GGCCSCEEC---------
T ss_pred cc--ceeecC----CEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccC-----CCCCCCeEecCCCceeEE
Confidence 32 222221 469999999999999999999976 433 233333333111 011155555554332 6
Q ss_pred eCCCCeEEEEEEEE----ccCCCeEEEEECCEEeccCc--eEE-----------eCCeEEEEEcccCCCCC-eEEEEEEE
Q psy16852 223 VPKDSTVTLEAEYT----GTPTPEVKWFKNGKEIVSKD--IET-----------KDNVTKLVIKQTTKKTT-GKYEIRVV 284 (579)
Q Consensus 223 ~~~g~~~~l~C~~~----~~p~~~v~W~~~~~~i~~~~--~~~-----------~~~~~~l~i~~~~~~d~-G~y~C~a~ 284 (579)
+.+|+.+.|.|.+. +.|.+.+.|+++|..+.... ... ......|.|.++..+|+ |.|+|.|.
T Consensus 238 v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~ 317 (349)
T 4dep_C 238 KEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHAR 317 (349)
T ss_dssp -------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEE
T ss_pred EecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEE
Confidence 78899999999998 56888999999998876511 100 11234599999999999 99999999
Q ss_pred cCCeeeEEEEEEEEEe
Q psy16852 285 NEAGEARTSGSVTITV 300 (579)
Q Consensus 285 n~~g~~~~~~~~~v~~ 300 (579)
|..|.....+.|.|..
T Consensus 318 N~~G~~~~~~~l~v~~ 333 (349)
T 4dep_C 318 SAKGEVAKAAKVKQKV 333 (349)
T ss_dssp CSSCEEEEECC-----
T ss_pred cCCCcEEEEEEEeeec
Confidence 9999988887777643
No 72
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.97 E-value=2.3e-31 Score=250.11 Aligned_cols=271 Identities=17% Similarity=0.211 Sum_probs=191.2
Q ss_pred CceeeeCCCCEEEEEEEEee-CCCeeEEEECCEEe---------------cCC--CCEEEEE-eCCEEEEEEcCCCCCCC
Q psy16852 14 QPVVSHQEQPALFTCKVEGH-PLPTMTWQKDGTEL---------------HAT--EHYLITT-VESVSTLEIINPTKEDI 74 (579)
Q Consensus 14 ~~~~v~~G~~~~l~C~~~~~-~~~~v~W~~~g~~~---------------~~~--~~~~~~~-~~~~~~L~i~~~~~~d~ 74 (579)
..+.+.+|++++|.|.+.+. +.+.++|+|++... ... .+..... .....+|.|.+++.+|+
T Consensus 7 p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~ 86 (308)
T 4fom_A 7 PHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDS 86 (308)
T ss_dssp CSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGC
T ss_pred CEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHC
Confidence 46789999999999998654 34579999964321 111 1111110 12346799999999999
Q ss_pred EEEEEEEEcC-CeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEEccCCCCc
Q psy16852 75 GVYTCKATNI-GGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDNGH 152 (579)
Q Consensus 75 G~Y~C~~~~~-~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~ 152 (579)
|.|+|.|.+. .|.......+.+...+ .+.....+.......|+.+.|.|.+ .+.|.+.|.|++++..+.....
T Consensus 87 G~Y~C~a~n~~~~~~~~~~~~~v~~~~----~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~- 161 (308)
T 4fom_A 87 GKYICKAVTFPLGNAQSSTTVTVLVEP----TVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTT- 161 (308)
T ss_dssp EEEEEEEEETTTEEEEEEEEEEEEBCC----EEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEE-
T ss_pred EEEEEEEeeCCCcceeeeeEEEeeecc----ccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccc-
Confidence 9999999875 4666667777776542 1122333444556678999999986 6789999999999876643211
Q ss_pred eEEEcCC--CCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEecc-CCceeeCCCCeE
Q psy16852 153 TMEFNPT--TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRP-LQALLVPKDSTV 229 (579)
Q Consensus 153 ~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~-~~~~~~~~g~~~ 229 (579)
..... .....|.|..+..+|+|.|+|.|.|..+....+..+.+. +..+|.+... .....+..|+.+
T Consensus 162 --~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~---------V~~~P~~~~~~~~~~~~~~g~~v 230 (308)
T 4fom_A 162 --SFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILD---------IQYAPEVSVTGYDGNWFVGRKGV 230 (308)
T ss_dssp --ECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC---------CCEEEEECCBCCCSCEETTCCSC
T ss_pred --eeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEE---------EecCCeeEEcccceeeeeccccE
Confidence 00000 112479999999999999999999987766555555443 2234444333 334457788999
Q ss_pred EEEEEEEccCCC-eEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEecc
Q psy16852 230 TLEAEYTGTPTP-EVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302 (579)
Q Consensus 230 ~l~C~~~~~p~~-~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~ 302 (579)
+|.|.+.|.|.+ .+.|++++..+.... .......|.|.+++.+|+|.|+|.|.|..|....++.|.|...+
T Consensus 231 ~l~C~~~g~P~p~~v~W~k~~~~~~~~~--~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P 302 (308)
T 4fom_A 231 NLKCNADANPPPFKSVWSRLDGQWPDGL--LASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPP 302 (308)
T ss_dssp EEECCEEEESCEEEEECCBSSSCCCSSC--BCSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC
T ss_pred EEEEEEecCCCCcEEEEEECCeECCCcE--EEcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCC
Confidence 999999999988 799999998776543 22344567789999999999999999999998877777765443
No 73
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.97 E-value=2.2e-30 Score=241.14 Aligned_cols=268 Identities=17% Similarity=0.154 Sum_probs=189.8
Q ss_pred CCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGE 289 (579)
Q Consensus 210 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~ 289 (579)
.+|.+...+....+.+|+.+.|.|.+.+ .+.|++++..+. .. ...+..|.|.+++.+|+|.|+|.|.| |.
T Consensus 11 ~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~~---~~-~~~~~~L~i~~~~~~d~G~Y~C~~~n--g~ 80 (290)
T 2o26_X 11 SPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNE---MV-ENKKNEWIQEKAEATRTGTYTCSNSN--GL 80 (290)
T ss_dssp -CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSSC---EE-EECSSEEEETTCCGGGCEEEEEEESS--SC
T ss_pred CCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCccee---ee-cCCCceEEEeccCHHhCeEEEEEeeC--Cc
Confidence 5677777777788999999999999876 899999987661 11 12227899999999999999999998 43
Q ss_pred eEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCC-CeEEE-EECCEEccCCCeEEEEECCCCeEEEE
Q psy16852 290 ARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPT-PLVTW-SHDGTPMKEGKEVTIYQDTDGLCKLA 367 (579)
Q Consensus 290 ~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~-~~i~W-~~~~~~~~~~~~~~~~~~~~~~~~l~ 367 (579)
..++.+.|...+... ...-.. .........+.|.+.+ |. +.+.| .++|..+..+.++..... + .|.
T Consensus 81 -~~~~~l~V~~~~~~~-~~~~~~-----~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~--~--~L~ 148 (290)
T 2o26_X 81 -TSSIYVFVRDPAKLF-LVGLPL-----FGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNPK--A--GIT 148 (290)
T ss_dssp -EEEEEEEEECSSCCB-CCCCCE-----EEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEETT--T--EEE
T ss_pred -cEEEEEEEeCCCccc-ccccce-----EEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCCC--C--CEE
Confidence 455555555322211 100000 0011122334577775 77 89999 578888876655443322 2 799
Q ss_pred EcccCCCCCE-EEEEEEEcCceeEEE-EEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCe-EEEeeC
Q psy16852 368 ISEVFPENAG-LYSCTAVNPVGEAVA-AATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPS-ICWYRG 444 (579)
Q Consensus 368 i~~~~~~d~G-~Y~C~a~n~~g~~~~-~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~-v~W~~~ 444 (579)
|.++..+|+| .|+|.|.|..+.... .+.|.|... ...+|.+...+....+.+|+.++|.|.+.|.|.|. +.|+++
T Consensus 149 i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~--~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~ 226 (290)
T 2o26_X 149 IKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREA--IKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKM 226 (290)
T ss_dssp EESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECC--CCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEE
T ss_pred EecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeC--CCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecC
Confidence 9999999999 999999998665433 467777631 22478887777777899999999999999999996 999999
Q ss_pred CEEc----CCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeC
Q psy16852 445 KEEI----LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENV 520 (579)
Q Consensus 445 ~~~l----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 520 (579)
+..+ .......+.. . ......+.|.|.+++.+|+|.|+|.|.|.
T Consensus 227 ~~~~~~~~~~~~~~~~~~--------------------~------------~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~ 274 (290)
T 2o26_X 227 NPQPQHIAQVKHNSWHRG--------------------D------------FNYERQETLTISSARVDDSGVFMCYANNT 274 (290)
T ss_dssp SSSEEECCCEECCEEEEE--------------------T------------TEEEEEEEEEESSCCSSSCEEEEEEEECS
T ss_pred CCCCccceeecccccccC--------------------c------------eeeEEEEEEEEcCCCcccCeEEEEEEeCC
Confidence 8763 2111111100 0 01123457999999999999999999999
Q ss_pred CeeEEEEEEEEEe
Q psy16852 521 AGSVTCTATLSLL 533 (579)
Q Consensus 521 ~g~~~~~~~l~v~ 533 (579)
.|....++.|.|.
T Consensus 275 ~g~~~~~~~l~V~ 287 (290)
T 2o26_X 275 FGSANVTTTLKVV 287 (290)
T ss_dssp SCEEEEEEEECC-
T ss_pred CCcEEEEEEEEEE
Confidence 9999998888875
No 74
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.97 E-value=7.4e-31 Score=244.82 Aligned_cols=269 Identities=16% Similarity=0.210 Sum_probs=196.4
Q ss_pred CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI 84 (579)
Q Consensus 5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 84 (579)
.||.|...+.++.+.+|++++|.|.+.+ .+.|++++.. ............|.|.+++.+|+|.|+|.+.|.
T Consensus 3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~-----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~ 73 (292)
T 4dkd_C 3 SIPVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPPSP-----HWTLYSDGSSSILSTNNATFQNTGTYRCTEPGD 73 (292)
T ss_dssp -CCEEESCCSSCEECTTCCEEEEEECSS----CCCBCCCCCS-----SCEECCBTTEEEEEESSCCGGGCSCEEECCCC-
T ss_pred CCceecCCCCeEEEcCCCcEEEEEcCCC----ceEEccCCCC-----ceEEeccCceEEEEEcccccccCEEEEEEEccC
Confidence 5899999999999999999999999976 3999976542 223333445689999999999999999999998
Q ss_pred CeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecC--CeEEEEECCE-EccCCCCceEEEcCCCC
Q psy16852 85 GGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT--PSICWYRGKE-EILPDNGHTMEFNPTTG 161 (579)
Q Consensus 85 ~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~-~~~~~~~~~~~~~~~~~ 161 (579)
.+.....+.|.|...+ ..+...+....+.+|+.+.|.|.+.+ |. +.+.|++++. .+..... ......
T Consensus 74 ~~~~~~~~~l~V~~~~-----~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~--~~~~~~-- 143 (292)
T 4dkd_C 74 PLGGSAAIHLYVKDPA-----RPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTN--YSFSPW-- 143 (292)
T ss_dssp ---CCEEECCEECCSS-----CCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCC--EECCSS--
T ss_pred CCCcceEEEEEEcCcc-----ccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCc--ccccCC--
Confidence 7777777788886532 22344556778899999999999987 54 7899999844 3333222 222222
Q ss_pred eEEEEECcCCCCCCeEEEEEEEcCCceeEE-EEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCC
Q psy16852 162 ECVLSISEATPQDEAVYSVKAVNTFGRAEC-RANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPT 240 (579)
Q Consensus 162 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~ 240 (579)
..|.|.++..+|+|.|+|.+.+..+.... ...+.+... ...+|.+...+....+.+|+.+.|.|.+.+.|.
T Consensus 144 -~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~-------~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~ 215 (292)
T 4dkd_C 144 -HGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKV-------IPGPPALTLVPAELVRIRGEAAQIVCSASSVDV 215 (292)
T ss_dssp -SCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECC-------CCSSCEEEEESSCBCCCSSSCEEEEEEEEESSS
T ss_pred -ceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCC-------CCCCCeEEccCCceeEecCCCEEEEEEecCCCC
Confidence 23999999999999999999988665433 445555421 113677777777667789999999999998665
Q ss_pred -CeEEEEECCEEeccCce-EE----eCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEe
Q psy16852 241 -PEVKWFKNGKEIVSKDI-ET----KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300 (579)
Q Consensus 241 -~~v~W~~~~~~i~~~~~-~~----~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~ 300 (579)
..+.|++++..+..... .. ......|.|.++..+|+|.|+|.|.|..|....+..|.|..
T Consensus 216 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 281 (292)
T 4dkd_C 216 NFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVE 281 (292)
T ss_dssp CCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred ceEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEee
Confidence 47889998876654331 11 12335899999999999999999999999988777776653
No 75
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.97 E-value=1.8e-30 Score=248.75 Aligned_cols=283 Identities=15% Similarity=0.178 Sum_probs=163.6
Q ss_pred CCceeeCCCCeEEEEEEEEccCC-----------CeEEEEECCE------Eec--cCceEEeCCeEEEEEcccCCCCCeE
Q psy16852 218 LQALLVPKDSTVTLEAEYTGTPT-----------PEVKWFKNGK------EIV--SKDIETKDNVTKLVIKQTTKKTTGK 278 (579)
Q Consensus 218 ~~~~~~~~g~~~~l~C~~~~~p~-----------~~v~W~~~~~------~i~--~~~~~~~~~~~~l~i~~~~~~d~G~ 278 (579)
...+.+.+|+.+.|.|.+.+.|. +.+.|++++. .+. ............|.|.+++.+|+|.
T Consensus 14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 93 (349)
T 4dep_C 14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGN 93 (349)
T ss_dssp CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEE
T ss_pred eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEE
Confidence 34566889999999999887554 8999999883 221 0111111223479999999999999
Q ss_pred EEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEE-----eeeCCCeEEEEECCEEccCCCe
Q psy16852 279 YEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVV-----TGKPTPLVTWSHDGTPMKEGKE 353 (579)
Q Consensus 279 y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~g~p~~~i~W~~~~~~~~~~~~ 353 (579)
|+|.|.|..+....+..+.|...+....... ...............+.|.+ .|.|.+.+.|++++.++.....
T Consensus 94 Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~--~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~ 171 (349)
T 4dep_C 94 YTCMLRNTTYCSKVAFPLEVVQKDSCFNSPM--KLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNN 171 (349)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTSCCSC--CCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSS
T ss_pred EEEEEecCCceEEEEEEEEEecCCcccCccc--ccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccc
Confidence 9999999988877777777764321100000 00000000011112234543 6789999999999999876544
Q ss_pred EEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCc-eeE---EEEEEEEEEecccCCCCCeeecCCCce--eeecCCCeEE
Q psy16852 354 VTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPV-GEA---VAAATLAVEEKEESGEAPKFTKPLKPV--IAEAQSPATL 427 (579)
Q Consensus 354 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~---~~~~~l~v~~~~~~~~~p~~~~~~~~~--~~~~g~~~~l 427 (579)
+.. .+ ..|.|.++..+|+|.|+|.|.|.. |.. ...+.|.|...+....+|.+..+.... .+..|+.++|
T Consensus 172 ~~~--~~---~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l 246 (349)
T 4dep_C 172 VIP--EG---MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLI 246 (349)
T ss_dssp EEE--ET---TEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CC
T ss_pred eee--cC---CEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEE
Confidence 332 22 279999999999999999999986 543 566777777654444467777665443 7889999999
Q ss_pred EEEEE----eeCCCeEEEeeCCEEcCC-CCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEE
Q psy16852 428 KATVT----GRPTPSICWYRGKEEILP-DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLI 502 (579)
Q Consensus 428 ~C~~~----g~p~~~v~W~~~~~~l~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i 502 (579)
.|.+. |.|.|.+.|+++|..+.. ..++.+.. .. ......+ ....++|+|
T Consensus 247 ~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~--------~~---~~~~~~~---------------~~~~~~L~i 300 (349)
T 4dep_C 247 PCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINE--------SI---SHSRTED---------------ETRTQILSI 300 (349)
T ss_dssp CEEEEECCCTTCCCEEEEESSCC--------CCCCE--------EE---ECCTTCC---------------EEEEECC--
T ss_pred EEEEEEccCCCCCCEEEEEECCEEccccCCcccccc--------ce---eeecCCC---------------cEEEEEEEE
Confidence 99999 568899999999988755 22221100 00 0000000 112455999
Q ss_pred eecccccc-eeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 503 SKITRDQI-GDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 503 ~~~~~~d~-G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.++..+|+ |.|+|.|.|..|....++.|.|.
T Consensus 301 ~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~ 332 (349)
T 4dep_C 301 KKVTSEDLKRSYVCHARSAKGEVAKAAKVKQK 332 (349)
T ss_dssp -----------CEEEEECSSCEEEEECC----
T ss_pred eeccHHHcCCcEEEEEEcCCCcEEEEEEEeee
Confidence 99999999 99999999999999999999874
No 76
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.97 E-value=5.4e-28 Score=235.32 Aligned_cols=274 Identities=16% Similarity=0.213 Sum_probs=197.6
Q ss_pred ceecCCCceEEccCCcEEEEEEEEeecCCeEEEEEC--CEEccCCC---CceEEEcCCCCeEEEEECcCCCCCCeEEEEE
Q psy16852 107 KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRG--KEEILPDN---GHTMEFNPTTGECVLSISEATPQDEAVYSVK 181 (579)
Q Consensus 107 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~--~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 181 (579)
.+.. +.+..+.+|+.+.|.|.+.|.|.+.|.|+++ +..+.... ..++......+.+.|.|.+++.+|+|.|+|.
T Consensus 3 ~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 81 (389)
T 2jll_A 3 HIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCE 81 (389)
T ss_dssp EEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEE
T ss_pred eEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEE
Confidence 4443 4556777899999999999999999999999 87775421 2223333335678999999999999999999
Q ss_pred EEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc-----
Q psy16852 182 AVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----- 256 (579)
Q Consensus 182 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~----- 256 (579)
|.|..|.......+.|. .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|+++|..+....
T Consensus 82 a~n~~g~~~~~~~l~V~-----------~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~ 150 (389)
T 2jll_A 82 AASRIGGHQKSMYLDIE-----------YAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLK 150 (389)
T ss_dssp EECSSCEEEEEEEEEEE-----------EEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEE
T ss_pred EEeCCCCcceEEEEEEE-----------eCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEE
Confidence 99999988777777765 45555555555568899999999999999999999999999987643
Q ss_pred eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCC
Q psy16852 257 IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPT 336 (579)
Q Consensus 257 ~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~ 336 (579)
.........|.|.++...|+|.|+|.|.|..|.......+.+...+..+..+...........+.|.... ...|.|.
T Consensus 151 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~~~~~~~~~~~~l~w~~p~---~~~g~pi 227 (389)
T 2jll_A 151 TYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPD---SHGGVPI 227 (389)
T ss_dssp EEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEEEEEEECSSCEEEEEECCS---CCTTSCE
T ss_pred EeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcceEEeeccCCEEEEEEeCCC---CCCCcce
Confidence 2223456789999999999999999999999998777766665444444344444444455566665321 1123332
Q ss_pred C--eEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEe
Q psy16852 337 P--LVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400 (579)
Q Consensus 337 ~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 400 (579)
. .+.|.+++... .. ..........+.|.++...+.|.|+|.|.|..|....+..+.+..
T Consensus 228 ~~y~v~~~~~~~~~----~~-~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t 288 (389)
T 2jll_A 228 HHYQVDVKEVASEI----WK-IVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQT 288 (389)
T ss_dssp EEEEEEEEETTCSC----CE-EEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEEC
T ss_pred EEEEEEEEECCCcc----cE-EeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEe
Confidence 2 57788776421 11 122222334799999999999999999999999766555554443
No 77
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.97 E-value=1e-28 Score=231.82 Aligned_cols=264 Identities=25% Similarity=0.377 Sum_probs=199.5
Q ss_pred CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCC-CCEEEEE-eCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHAT-EHYLITT-VESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~-~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
.||.|...|.++.+.+|+.++|.|.+.+.|.+.+.|+++|..+... .++.... .++...|.|.+++.+|+|.|+|.+.
T Consensus 3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 82 (305)
T 2nzi_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT 82 (305)
T ss_dssp CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEE
T ss_pred CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEE
Confidence 5899999999999999999999999999999999999999998754 3455443 3456799999999999999999999
Q ss_pred cCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCe
Q psy16852 83 NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 162 (579)
Q Consensus 83 ~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~ 162 (579)
|..|.....+.|.|...+... .+.....+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....+..+... ...
T Consensus 83 n~~g~~~~~~~l~V~~~p~~~-~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~--~~~ 159 (305)
T 2nzi_A 83 NQGGSVSGTASLEVEVPAKIH-LPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT--RSF 159 (305)
T ss_dssp ETTEEEEEEEEEEECEEEEEC-CCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEEC--SSE
T ss_pred cCCCCccceEEEEEecCCccC-CCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEc--CCc
Confidence 999988888888887654322 22223334567788999999999999999999999999988876655554432 345
Q ss_pred EEEEECc-CCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeE------------
Q psy16852 163 CVLSISE-ATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTV------------ 229 (579)
Q Consensus 163 ~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~------------ 229 (579)
..|.|.+ +..+|+|.|+|.|.|..|.......+.+.... .+|.... .....+..+
T Consensus 160 ~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P--------~~p~~~~----~~~~~~~~v~l~w~~p~~~g~ 227 (305)
T 2nzi_A 160 TSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVP--------DPPRGVK----VSDVSRDSVNLTWTEPASDGG 227 (305)
T ss_dssp EEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCC--------CCCEEEE----EESCCSSCEEEEEECCSCCSB
T ss_pred eEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCC--------CCCCCce----eeeccCCEEEEEEcCCccCCC
Confidence 7899999 99999999999999999988877777765211 2222110 011123334
Q ss_pred --EEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEE
Q psy16852 230 --TLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTS 293 (579)
Q Consensus 230 --~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~ 293 (579)
.+.|.+...+.+...|.+.+... ...+.|.++...+.|.|+|.|.|..|....+
T Consensus 228 ~~i~~y~v~~~~~~~~~w~~~~~~~----------~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S 283 (305)
T 2nzi_A 228 SKITNYIVEKCATTAERWLRVGQAR----------ETRYTVINLFGKTSYQFRVIAENKFGLSKPS 283 (305)
T ss_dssp SCEEEEEEEEEETTSCCEEEEEEES----------SSEEEECSCCSSCEEEEEEEEEETTEECCCC
T ss_pred CceeEEEEEEecCCCCccEECcccc----------CceEEecCCCCCCeEEEEEEEEeCCcccCCc
Confidence 44555554444455565543321 3469999999999999999999999976544
No 78
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.97 E-value=4.1e-30 Score=242.02 Aligned_cols=262 Identities=16% Similarity=0.175 Sum_probs=177.4
Q ss_pred cCCceeeCCCCeEEEEEEEEccCCC-----eEEEEECCEEec-------------cCc-eEE-------eCCeEEEEEcc
Q psy16852 217 PLQALLVPKDSTVTLEAEYTGTPTP-----EVKWFKNGKEIV-------------SKD-IET-------KDNVTKLVIKQ 270 (579)
Q Consensus 217 ~~~~~~~~~g~~~~l~C~~~~~p~~-----~v~W~~~~~~i~-------------~~~-~~~-------~~~~~~l~i~~ 270 (579)
.+..+.+..|++++|.|.+.+.+.+ .+.|+|++.... ... ... .....+|.|.+
T Consensus 6 ~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~ 85 (313)
T 4fqp_A 6 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFG 85 (313)
T ss_dssp CCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECS
T ss_pred CCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECc
Confidence 3445567889999999999886655 489999875321 110 111 11235699999
Q ss_pred cCCCCCeEEEEEEEc-CCeeeEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEE-eeeCCCeEEEEECCEEc
Q psy16852 271 TTKKTTGKYEIRVVN-EAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVV-TGKPTPLVTWSHDGTPM 348 (579)
Q Consensus 271 ~~~~d~G~y~C~a~n-~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~g~p~~~i~W~~~~~~~ 348 (579)
++.+|+|.|+|.+.+ ..+.....+ .|.+...+........... .......+.|.+ .|.|.+.+.|++++..+
T Consensus 86 v~~~D~G~Y~C~v~~~~~~~~~~~~--~l~v~~~P~~~~~~~~~~~----~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~ 159 (313)
T 4fqp_A 86 LRVEDEGNYTCLFVTFPQGSRSVDI--WLRVLAKPQNTAEVQKVQL----TGEPVPMARCVSTGGRPPAQITWHSDLGGM 159 (313)
T ss_dssp CCGGGCEEEEEEEECSSSCEEEEEE--EECCBBCCEEEEEECCBCC----CSSCEEEEEEEEEEEBSCCEEEEEETTCCE
T ss_pred CChhhCEEEEEEEeeccCcceeeee--eeeeccCCcceecccceEe----ecCceEEEEEEccCccCCcEEEeecCCccc
Confidence 999999999999864 344444443 4443333333222211110 111112234654 57899999999998876
Q ss_pred cCCCeEEEEECCCC----eEEEEEcccCCCCCEEEEEEEEcCceeE--EEEEEEEEEecccCCCCCeee-cCCCceeeec
Q psy16852 349 KEGKEVTIYQDTDG----LCKLAISEVFPENAGLYSCTAVNPVGEA--VAAATLAVEEKEESGEAPKFT-KPLKPVIAEA 421 (579)
Q Consensus 349 ~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~~~~~~~p~~~-~~~~~~~~~~ 421 (579)
....... ...++ .+.|.|.....+|+|.|+|.|.|..+.. ..++.|.|.. +|.+. .+.....+..
T Consensus 160 ~~~~~~~--~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~------~P~v~~~~~~~~~~~~ 231 (313)
T 4fqp_A 160 PNTSQVP--GFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYY------PPEVSISGYDNNWYLG 231 (313)
T ss_dssp EEEEEEE--CSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCE------EEEEEEECCCSCEETT
T ss_pred cccceee--eecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeeccccc------CCccccccccceeecC
Confidence 5433222 11222 2468999999999999999999987644 3444555554 56654 3444456778
Q ss_pred CCCeEEEEEEEeeCCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEE
Q psy16852 422 QSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL 500 (579)
Q Consensus 422 g~~~~l~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l 500 (579)
|+.++|.|.+.|+|.| .|.|+++|..+.... . ...+.|
T Consensus 232 g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~--~---------------------------------------~~~~~L 270 (313)
T 4fqp_A 232 QNEATLTCDARSNPEPTGYNWSTTMGPLPPFA--V---------------------------------------AQGAQL 270 (313)
T ss_dssp CCCEEEEEEEEEESCCCEEEEEETTBSCCTTE--E---------------------------------------EETTEE
T ss_pred CCeEEEEEEecCCCCCcEEEEEECCEECCCce--E---------------------------------------EeCCEE
Confidence 8999999999999999 799999998774321 0 012349
Q ss_pred EEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 501 LISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 501 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 271 ~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 303 (313)
T 4fqp_A 271 LIRPVDKPINTTLICNVTNALGARQAELTVQVK 303 (313)
T ss_dssp EECCCSSCCEEEEEEEEECSSCEEEEEEEEEEE
T ss_pred EECcCChhhCEEEEEEEEeCCCcEEEEEEEEEE
Confidence 999999999999999999999999999999986
No 79
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.97 E-value=1.6e-29 Score=235.31 Aligned_cols=274 Identities=16% Similarity=0.164 Sum_probs=192.7
Q ss_pred CCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGE 289 (579)
Q Consensus 210 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~ 289 (579)
.+|.+...+....+.+|+.+.|.|.+.+ .+.|++++.... ..........|.|.+++.+|+|.|+|.+.|..+.
T Consensus 3 p~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 76 (289)
T 3ejj_X 3 PAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYW--TLDPESPGSTLTTRNATFKNTGTYRCTELEDPMA 76 (289)
T ss_dssp -CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSS--EECCCSSCCEEEESSCCGGGCEEEEEECCC----
T ss_pred CCcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCceE--EEeccCCccEEEEeeeccccCEEEEEEEeccCCc
Confidence 3566666667778999999999999876 599998764321 1122345578999999999999999999988877
Q ss_pred eEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCe-EEEEE-CCEEccCCCeEEEEECCCCeEEEE
Q psy16852 290 ARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPL-VTWSH-DGTPMKEGKEVTIYQDTDGLCKLA 367 (579)
Q Consensus 290 ~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~-i~W~~-~~~~~~~~~~~~~~~~~~~~~~l~ 367 (579)
......+.|...+.......-... ........+.|.+.+.+.+. +.|++ ++..+....++..... + .|.
T Consensus 77 ~~~~~~l~V~~~~~~~~~~~~~~~-----v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~--~--~L~ 147 (289)
T 3ejj_X 77 GSTTIHLYVKDPAHSWNLLAQEVT-----VVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPW--R--GFI 147 (289)
T ss_dssp -CEEEEEEECCSSCSEEESCSEEE-----EETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETT--T--EEE
T ss_pred ceeEEEEEEeCCCcceecccceEE-----EecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCC--C--CEE
Confidence 666666665543322111110011 11112233468888877765 99986 6777766655554322 2 699
Q ss_pred EcccCCCCCEEEEEEEE-cCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEe-eCCCeEEEeeCC
Q psy16852 368 ISEVFPENAGLYSCTAV-NPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTPSICWYRGK 445 (579)
Q Consensus 368 i~~~~~~d~G~Y~C~a~-n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~~v~W~~~~ 445 (579)
|.++..+|+|.|+|.|. +..+.....+.|.|... ...+|.+...+....+.+|+.++|.|.+.+ .|.+.+.|++++
T Consensus 148 i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~--~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~ 225 (289)
T 3ejj_X 148 IRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRV--HPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGD 225 (289)
T ss_dssp ESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESS--CCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETT
T ss_pred EeecccccCEEEEEEEEeCCCccccccEEEEEEEC--CCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECC
Confidence 99999999999999999 65666667778888742 224788887777777889999999999998 789999999999
Q ss_pred EEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEE
Q psy16852 446 EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525 (579)
Q Consensus 446 ~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 525 (579)
..+......... . ......+.|.|.+++.+|+|.|+|.|.|..|...
T Consensus 226 ~~~~~~~~~~~~----~-----------------------------~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~ 272 (289)
T 3ejj_X 226 TKLEIPLNSDFQ----D-----------------------------NYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRT 272 (289)
T ss_dssp EECCCCEEEEEC----S-----------------------------SSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEE
T ss_pred EEeeccCCcccc----c-----------------------------ceEEeeEEEEEEeecccCCEEEEEEEEcCCCCcc
Confidence 888543221110 0 0011245699999999999999999999999999
Q ss_pred EEEEEEEe
Q psy16852 526 CTATLSLL 533 (579)
Q Consensus 526 ~~~~l~v~ 533 (579)
.++.|.+.
T Consensus 273 ~s~~L~~~ 280 (289)
T 3ejj_X 273 ATMNFQVV 280 (289)
T ss_dssp EEEEEECC
T ss_pred ccEEEEEE
Confidence 99999975
No 80
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.97 E-value=1.5e-30 Score=245.53 Aligned_cols=279 Identities=17% Similarity=0.186 Sum_probs=190.3
Q ss_pred ceeeCCCCeEEEEEEEEccC-CCeEEEEECCEEeccC---ceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEE
Q psy16852 220 ALLVPKDSTVTLEAEYTGTP-TPEVKWFKNGKEIVSK---DIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGS 295 (579)
Q Consensus 220 ~~~~~~g~~~~l~C~~~~~p-~~~v~W~~~~~~i~~~---~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~ 295 (579)
.+.+.+|+.+.|.|.+.+.| .+.+.|++++..+... ..........|.|.+++.+|+|.|+|.|.|..|.......
T Consensus 14 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 93 (315)
T 1itb_B 14 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKIS 93 (315)
T ss_dssp CCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSCCCCEECC
T ss_pred EEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCceEEEEEEE
Confidence 45688999999999998877 6799999998643211 1111112237999999999999999999998877665554
Q ss_pred EEEEecccee-----eeeeeeeeccccCceeeeecCeeEEE------eeeCCCeEEEEECCEEccCCCeEEEEECCCCeE
Q psy16852 296 VTITVAEAET-----VMMDVRVESHPTASFQWFIHSEPVVV------TGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLC 364 (579)
Q Consensus 296 ~~v~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~------~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~ 364 (579)
+.+...+... ....-.+..+. ...+.|.+ .|.|.+.+.|++++.++........... +
T Consensus 94 v~v~~~~p~~~~~~~~~~~~~~~~g~-------~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~--~-- 162 (315)
T 1itb_B 94 AKFVENEPNLCYNAQAIFKQKLPVAG-------DGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVK--D-- 162 (315)
T ss_dssp CEEECCCTTSSSCGGGEEEEEEETTS-------CEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEET--T--
T ss_pred EEEeCCCCCcccccccccceEEecCC-------CeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecC--c--
Confidence 4433221110 00001111111 12234655 7889999999999999865432222222 2
Q ss_pred EEEEcccCCCCCEEEEEEEE-cCceeE---EEEEEEEEEecccCCCCCeeecCCCc-eeeecCCCeEEEEEEEeeCCCeE
Q psy16852 365 KLAISEVFPENAGLYSCTAV-NPVGEA---VAAATLAVEEKEESGEAPKFTKPLKP-VIAEAQSPATLKATVTGRPTPSI 439 (579)
Q Consensus 365 ~l~i~~~~~~d~G~Y~C~a~-n~~g~~---~~~~~l~v~~~~~~~~~p~~~~~~~~-~~~~~g~~~~l~C~~~g~p~~~v 439 (579)
.|.|.++..+|+|.|+|.|. |..|.. ...+.+.+.. +....+|.+..++.. ..+.+|+.++|.|.+.|.|.|.+
T Consensus 163 ~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~-~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i 241 (315)
T 1itb_B 163 RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLE-ENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIA 241 (315)
T ss_dssp EEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEEC-CCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEE
T ss_pred eEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEec-CCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCee
Confidence 89999999999999999999 777766 3333443332 122357778766554 57899999999999999999999
Q ss_pred EEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeeccccc-ceeEEEEEE
Q psy16852 440 CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQ-IGDVTCRAE 518 (579)
Q Consensus 440 ~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~ 518 (579)
.|+++|..+.......... ...+.... +.+ .....+.|.|.+++.+| +|.|+|.|.
T Consensus 242 ~W~~~g~~i~~~~~~~~~~-------~~~~~~~~--~~~--------------~~~~~~~L~i~~v~~~d~~G~Y~C~a~ 298 (315)
T 1itb_B 242 YWKWNGSVIDEDDPVLGED-------YYSVENPA--NKR--------------RSTLITVLNISEIESRFYKHPFTCFAK 298 (315)
T ss_dssp EEEETTEECCTTCSSEEEE-------EEEECCSS--CGG--------------GEEEEEEEEESSCCGGGGTSCEEEEEE
T ss_pred EEEECCEECCccccccccc-------ceeeeccC--CCc--------------eeEEEEEEEEeecCHHHcCCceEEEEe
Confidence 9999999987665432210 01111000 000 01134579999999999 999999999
Q ss_pred eCCeeEEEEEEEEEe
Q psy16852 519 NVAGSVTCTATLSLL 533 (579)
Q Consensus 519 n~~g~~~~~~~l~v~ 533 (579)
|..|....++.|.|.
T Consensus 299 N~~G~~~~~~~l~v~ 313 (315)
T 1itb_B 299 NTHGIDAAYIQLIYP 313 (315)
T ss_dssp CTTCCEEEEEEEECC
T ss_pred cCCCceeEEEEEEec
Confidence 999999999999874
No 81
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.97 E-value=3.7e-31 Score=252.41 Aligned_cols=289 Identities=16% Similarity=0.194 Sum_probs=203.9
Q ss_pred CCCeEeccCCceeeCCCCeEEEEEEEE-------ccCCCeEEEEECCEEe--ccC-ceEEeCCeEEEEEcccCCCCCeEE
Q psy16852 210 EAPTIVRPLQALLVPKDSTVTLEAEYT-------GTPTPEVKWFKNGKEI--VSK-DIETKDNVTKLVIKQTTKKTTGKY 279 (579)
Q Consensus 210 ~~p~~~~~~~~~~~~~g~~~~l~C~~~-------~~p~~~v~W~~~~~~i--~~~-~~~~~~~~~~l~i~~~~~~d~G~y 279 (579)
..|.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+ ... ..........|.|.+++.+|+|.|
T Consensus 17 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 96 (339)
T 3o4o_C 17 SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTY 96 (339)
T ss_dssp -CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCEEE
T ss_pred hhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccCEEE
Confidence 456666777788899999999999997 8888899999999873 332 111112234799999999999999
Q ss_pred EEEEEcCCeeeEEEEEEEEEecccee---eeeeeeeeccccCceeeeecCeeEE-----EeeeCCCeEEEEECCEEccCC
Q psy16852 280 EIRVVNEAGEARTSGSVTITVAEAET---VMMDVRVESHPTASFQWFIHSEPVV-----VTGKPTPLVTWSHDGTPMKEG 351 (579)
Q Consensus 280 ~C~a~n~~g~~~~~~~~~v~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~-----~~g~p~~~i~W~~~~~~~~~~ 351 (579)
+|.+.|..|....+..+.|...+... ....-.+..+.. ..+.|. +.|.|.+.+.|++++..+...
T Consensus 97 ~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~-------v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~ 169 (339)
T 3o4o_C 97 VCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTS-------GVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKD 169 (339)
T ss_dssp ECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSC-------EEEECCSCTTTCCSSSCCCBCCEESSCBCCTT
T ss_pred EEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCC-------EEEEecCCcccccCCCCceEEEecCCeeCCCC
Confidence 99999999877777777776433211 000011111111 223466 678899999999999988765
Q ss_pred -CeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCce----eEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeE
Q psy16852 352 -KEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG----EAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPAT 426 (579)
Q Consensus 352 -~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g----~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 426 (579)
.++.. .... ..|.|.++..+|+|.|+|.|.|..| .....+.|.|...+. ..+|.+..++....+..|+.++
T Consensus 170 ~~~~~~-~~~~--~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~-~~~P~i~~~~~~~~v~~G~~v~ 245 (339)
T 3o4o_C 170 NEKFLS-VRGT--THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKE-ETIPVIISPLKTISASLGSRLT 245 (339)
T ss_dssp CSSEEE-CTTS--SEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCC-CCCCEECCCSCCCCCCCCSCCC
T ss_pred CceeEE-cCCc--ceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCC-CCCCEEecCCceeEeccCCCEE
Confidence 33332 2222 2899999999999999999999887 466777888875432 2367787777777899999999
Q ss_pred EEEEE---EeeC-CCeEEEeeCCEEcCCCCC-eeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEE
Q psy16852 427 LKATV---TGRP-TPSICWYRGKEEILPDNG-HTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL 501 (579)
Q Consensus 427 l~C~~---~g~p-~~~v~W~~~~~~l~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~ 501 (579)
|.|.+ .|.| .+.+.|+++|..+..... ..+.. +. .......|.+. ..+.|.
T Consensus 246 L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~---~~-------~~~~~~~g~~~--------------~~~~L~ 301 (339)
T 3o4o_C 246 IPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTE---GP-------RQEYSENNENY--------------IEVPLI 301 (339)
T ss_dssp CCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEE---CC-------CEECCCSSSCE--------------EEECCE
T ss_pred EEEEEECCCCCCCCceEEEEECCeeccccccccccee---cc-------eEEecccCceE--------------EEEEEE
Confidence 99999 8999 789999999987753311 00000 00 00000011000 123599
Q ss_pred Eeecccccc-eeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 502 ISKITRDQI-GDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 502 i~~~~~~d~-G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
|.+++.+|+ |.|+|.|.|.+|.++..+.+.+.
T Consensus 302 i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~~~ 334 (339)
T 3o4o_C 302 FDPVTREDLHMDFKCVVHNTLSFQTLRTTVKEH 334 (339)
T ss_dssp ECSSCCCSCCCCCEEEEEETTEEECCBCCCCC-
T ss_pred EEEechhhcCccEEEEEEeccCceEEEEEhhHh
Confidence 999999998 99999999999999998888764
No 82
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.97 E-value=1.3e-30 Score=244.94 Aligned_cols=264 Identities=15% Similarity=0.172 Sum_probs=177.0
Q ss_pred ceeeCCCCeEEEEEEEEcc-CCCeEEEEECCEEeccC------------------ceE---EeCCeEEEEEcccCCCCCe
Q psy16852 220 ALLVPKDSTVTLEAEYTGT-PTPEVKWFKNGKEIVSK------------------DIE---TKDNVTKLVIKQTTKKTTG 277 (579)
Q Consensus 220 ~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~i~~~------------------~~~---~~~~~~~l~i~~~~~~d~G 277 (579)
.+.+.+|+.++|.|.+.+. +.+.+.|+|++...... ... ......+|.|.+++.+|+|
T Consensus 8 ~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G 87 (308)
T 4fom_A 8 HVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSG 87 (308)
T ss_dssp SCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCE
T ss_pred EeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCE
Confidence 3457789999999998754 44479999854321100 000 0123457999999999999
Q ss_pred EEEEEEEcC-CeeeEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEE-EeeeCCCeEEEEECCEEccCCCeEE
Q psy16852 278 KYEIRVVNE-AGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVV-VTGKPTPLVTWSHDGTPMKEGKEVT 355 (579)
Q Consensus 278 ~y~C~a~n~-~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~p~~~i~W~~~~~~~~~~~~~~ 355 (579)
.|+|.|.|. .+.......+.+.+.+......... ...........+.|. ..|.|.+.++|++++..+.......
T Consensus 88 ~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~ 163 (308)
T 4fom_A 88 KYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPD----SLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSF 163 (308)
T ss_dssp EEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSS----CCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEEC
T ss_pred EEEEEEeeCCCcceeeeeEEEeeeccccccccccc----eeEEcCCceEEEEEEecCCcCCceEEEEECCccccccccee
Confidence 999999885 5555556666655444332221110 001111112233465 5789999999999998775432111
Q ss_pred EEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeE--EEEEEEEEEecccCCCCCeeec-CCCceeeecCCCeEEEEEEE
Q psy16852 356 IYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEA--VAAATLAVEEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVT 432 (579)
Q Consensus 356 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~ 432 (579)
........+.|.|..+..+|+|.|+|.|.|..+.. ..++.|.|.. +|.+.. +.....+..|+.++|.|.+.
T Consensus 164 ~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~------~P~~~~~~~~~~~~~~g~~v~l~C~~~ 237 (308)
T 4fom_A 164 PNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQY------APEVSVTGYDGNWFVGRKGVNLKCNAD 237 (308)
T ss_dssp TTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCE------EEEECCBCCCSCEETTCCSCEEECCEE
T ss_pred eeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEec------CCeeEEcccceeeeeccccEEEEEEEe
Confidence 00000112479999999999999999999987654 3445555554 455543 33445677889999999999
Q ss_pred eeCCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccce
Q psy16852 433 GRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIG 511 (579)
Q Consensus 433 g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 511 (579)
|.|+| .+.|+|++..+..... ......|.|.+++.+|+|
T Consensus 238 g~P~p~~v~W~k~~~~~~~~~~----------------------------------------~~~~~~l~i~~v~~~d~G 277 (308)
T 4fom_A 238 ANPPPFKSVWSRLDGQWPDGLL----------------------------------------ASDNTLHFVHPLTFNYSG 277 (308)
T ss_dssp EESCEEEEECCBSSSCCCSSCB----------------------------------------CSTTEEECCSCCCSCCCS
T ss_pred cCCCCcEEEEEECCeECCCcEE----------------------------------------EcCCeEEEECCCChhhCE
Confidence 99999 7999999877643211 112334778899999999
Q ss_pred eEEEEEEeCCeeEEEEEEEEEe
Q psy16852 512 DVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 512 ~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.|+|.|.|.+|....++.|.|.
T Consensus 278 ~Y~C~A~N~~G~~~~~~~l~V~ 299 (308)
T 4fom_A 278 VYICKVTNSLGQRSDQKVIYIS 299 (308)
T ss_dssp EEEEEEEETTEEEEEEEECCEE
T ss_pred EEEEEEEeCCCcEEEEEEEEEE
Confidence 9999999999999999888875
No 83
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.97 E-value=4e-28 Score=227.74 Aligned_cols=271 Identities=23% Similarity=0.339 Sum_probs=205.3
Q ss_pred CCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEE
Q psy16852 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAV 183 (579)
Q Consensus 104 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 183 (579)
.+|.+...+..+.+.+|+.++|.|.+.+.|.+.+.|++++..+.............++...|.|.+++.+|+|.|+|.+.
T Consensus 3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 82 (305)
T 2nzi_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT 82 (305)
T ss_dssp CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEE
T ss_pred CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEE
Confidence 46778878888999999999999999999999999999999887554332222234566799999999999999999999
Q ss_pred cCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc---eEEe
Q psy16852 184 NTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETK 260 (579)
Q Consensus 184 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~---~~~~ 260 (579)
|..|.......+.+...... ..|.....+....+..|+.+.|.|.+.+.|.+.+.|++++..+.... ....
T Consensus 83 n~~g~~~~~~~l~V~~~p~~------~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~ 156 (305)
T 2nzi_A 83 NQGGSVSGTASLEVEVPAKI------HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT 156 (305)
T ss_dssp ETTEEEEEEEEEEECEEEEE------CCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEEC
T ss_pred cCCCCccceEEEEEecCCcc------CCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEc
Confidence 99888777777766532111 11222222345567889999999999999999999999998876543 2233
Q ss_pred CCeEEEEEcc-cCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeeccccCceeeeec-------CeeEEEe
Q psy16852 261 DNVTKLVIKQ-TTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIH-------SEPVVVT 332 (579)
Q Consensus 261 ~~~~~l~i~~-~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~ 332 (579)
.....|.|.+ +...|.|.|+|.|.|..|....+..+.|...+..+..+...........+.|... ...|.+.
T Consensus 157 ~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~ 236 (305)
T 2nzi_A 157 RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVE 236 (305)
T ss_dssp SSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEEEEEEE
T ss_pred CCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCceeeeccCCEEEEEEcCCccCCCCceeEEEEE
Confidence 4567899999 9999999999999999999888888888766666555555444455566666542 1245666
Q ss_pred eeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEE
Q psy16852 333 GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAA 394 (579)
Q Consensus 333 g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 394 (579)
..+.+...|.+.+... ...|.|.++...+.|.|+|.|.|..|.+..+.
T Consensus 237 ~~~~~~~~w~~~~~~~--------------~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S~ 284 (305)
T 2nzi_A 237 KCATTAERWLRVGQAR--------------ETRYTVINLFGKTSYQFRVIAENKFGLSKPSE 284 (305)
T ss_dssp EEETTSCCEEEEEEES--------------SSEEEECSCCSSCEEEEEEEEEETTEECCCCC
T ss_pred EecCCCCccEECcccc--------------CceEEecCCCCCCeEEEEEEEEeCCcccCCcC
Confidence 6666777777654432 11799999999999999999999999775443
No 84
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.97 E-value=4.4e-29 Score=228.80 Aligned_cols=249 Identities=18% Similarity=0.193 Sum_probs=181.6
Q ss_pred CeEeccCCceeeCCCCeEEEEEEEEccCCC-eEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeee
Q psy16852 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTP-EVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEA 290 (579)
Q Consensus 212 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~ 290 (579)
|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|+++|..+... ...|.|.+++.+|+|.|+|.+.|..+..
T Consensus 2 P~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~-------~~~l~i~~~~~~d~G~Y~C~~~~~~~s~ 74 (262)
T 3rjd_A 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS-------TPSYRITSASVNDSGEYRCQRGLSGRSD 74 (262)
T ss_dssp CEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC-------SSEEEESSCCGGGCEEEEEEESSSCCCC
T ss_pred CeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc-------CCeEEEecCCcccCeEEEEEEecCCccc
Confidence 455566666678899999999999988888 99999999988643 3569999999999999999998866543
Q ss_pred EEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEE-eeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEc
Q psy16852 291 RTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVV-TGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAIS 369 (579)
Q Consensus 291 ~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 369 (579)
...+.|. ... +.+... ...........+.|.+ .+.|.+.+.|++++..+.... . ...|.|.
T Consensus 75 --~~~l~v~--~~~-~~~~~~----~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~------~---~~~l~i~ 136 (262)
T 3rjd_A 75 --PIQLEIH--RGW-LLLQVS----SRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFH------W---NSNLTIL 136 (262)
T ss_dssp --CEEEEEE--CSS-EEEEES----CSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEE------E---CCCEEES
T ss_pred --cEEEEEe--ccc-eEecCC----CeEEecCCeEEEEEEccCCCCCceEEEEECCccccccC------C---CCeEEEE
Confidence 3334443 221 111110 1111122223345777 678889999999998874321 1 1279999
Q ss_pred ccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCC-C----eEEEeeC
Q psy16852 370 EVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT-P----SICWYRG 444 (579)
Q Consensus 370 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-~----~v~W~~~ 444 (579)
++..+|+|.|+|.|.|..+.....+.|.|.... .+|.+...+ ...+.+|+.++|.|.+.+.|. | .+.|+++
T Consensus 137 ~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~---~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~ 212 (262)
T 3rjd_A 137 KTNISHNGTYHCSGMGKHRYTSAGISVTVKELF---PAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMG 212 (262)
T ss_dssp SCCGGGCEEEEEEEESSSEEEEECEEEEEECSS---CCCEEEESS-CSSEETTCCEEEEEECCCCCC-----EEEEEEET
T ss_pred ECChhhCEEEEEEEeCCCCccccceEEEeccCC---CCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeC
Confidence 999999999999999999888888888887632 255565444 556889999999999999886 5 3788888
Q ss_pred CEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeE
Q psy16852 445 KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV 524 (579)
Q Consensus 445 ~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 524 (579)
+..+... ...+.|.|.++..+|+|.|+|.|.|..|..
T Consensus 213 ~~~~~~~-------------------------------------------~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~ 249 (262)
T 3rjd_A 213 SKTLRGR-------------------------------------------NTSSEYQILTARREDSGLYWCEAATEDGNV 249 (262)
T ss_dssp TEEEEEE-------------------------------------------ESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred CcEeccc-------------------------------------------CCCceEEEEEechhhCeEEEEEEEcccCce
Confidence 8766311 123459999999999999999999999964
Q ss_pred -EEEEEEEE
Q psy16852 525 -TCTATLSL 532 (579)
Q Consensus 525 -~~~~~l~v 532 (579)
..+..+.|
T Consensus 250 ~~~s~~~~l 258 (262)
T 3rjd_A 250 LKRSPELEL 258 (262)
T ss_dssp EEECCCEEE
T ss_pred EEecCCeEE
Confidence 33344443
No 85
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.97 E-value=4.3e-29 Score=236.49 Aligned_cols=268 Identities=15% Similarity=0.106 Sum_probs=183.8
Q ss_pred CceeeCCCCeEEEEEEEEcc---------CCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCe-EEEEEEEcCCe
Q psy16852 219 QALLVPKDSTVTLEAEYTGT---------PTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTG-KYEIRVVNEAG 288 (579)
Q Consensus 219 ~~~~~~~g~~~~l~C~~~~~---------p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~a~n~~g 288 (579)
..+.+.+|+.+.|.|.+.+. |.+.+.|++++..+...... .....|.|.+++.+|+| .|+|.|.|..|
T Consensus 37 ~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~--~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g 114 (329)
T 3oq3_B 37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR--VKNGDLWIANYTSNDSHRRYLCTVTTKNG 114 (329)
T ss_dssp EEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT--EETTEEEESSCCGGGGGCCEEEEEECTTS
T ss_pred ceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce--eecceEEEcCCChHhCCCcEEEEEEeCCC
Confidence 34568899999999998874 55699999998766432211 12347999999999999 99999999887
Q ss_pred eeEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeC-CCeEEEEECCEEccCC-CeEEEEECCCCeEEE
Q psy16852 289 EARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKP-TPLVTWSHDGTPMKEG-KEVTIYQDTDGLCKL 366 (579)
Q Consensus 289 ~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p-~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~l 366 (579)
.........+...+ +. .+...... .........+.|.+.|.| .+.+.|++++..+... .++... . + .|
T Consensus 115 ~~~~~~~~~v~~~~-p~-~~~~~~~~---~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~-~--~--~L 184 (329)
T 3oq3_B 115 DCVQGIVRSHIRKP-PS-CIPETYEL---GTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS-G--Q--NL 184 (329)
T ss_dssp CEEEEEEEEEECCC-CS-CEEEEEET---TSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEE-T--T--EE
T ss_pred ceeeEEEEEEEcCC-Cc-Eeccccce---EEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecC-C--C--EE
Confidence 64444333222222 11 11111110 111122234468889999 8999999999998633 333332 2 2 89
Q ss_pred EEcccCCCCCEEEEEEEEcC--ceeE----EEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeC---CC
Q psy16852 367 AISEVFPENAGLYSCTAVNP--VGEA----VAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP---TP 437 (579)
Q Consensus 367 ~i~~~~~~d~G~Y~C~a~n~--~g~~----~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p---~~ 437 (579)
.|.++..+|+|.|+|.|.|. .|.. ...+.|.|...+.. ..|.+ .+....+.+|+.++|.|.+.|.| .|
T Consensus 185 ~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~-~~~~~--~~~~~~v~~G~~~~l~C~~~g~p~~~~~ 261 (329)
T 3oq3_B 185 IIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDH-RFKLI--LDPKINVTIGEPANITCTAVSTSLLVDD 261 (329)
T ss_dssp EECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCC-CEEEE--CCSEEEECTTSCEEEEEEEEETTCCTTC
T ss_pred EEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCC-CCcee--cCCeeEEecCCCEEEEEEEEECCCCCCC
Confidence 99999999999999999986 4432 23366777653211 01333 45557899999999999999998 77
Q ss_pred -eEEEeeCCEEcCCCCC-eeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccce-eEE
Q psy16852 438 -SICWYRGKEEILPDNG-HTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIG-DVT 514 (579)
Q Consensus 438 -~v~W~~~~~~l~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~ 514 (579)
.+.|+++|..+..... ...... .......+.|.|.+++.+|+| .|+
T Consensus 262 i~v~W~~~g~~i~~~~~~~~~~~~-------------------------------~~~~~~~~~L~I~~v~~~D~G~~Y~ 310 (329)
T 3oq3_B 262 VLIDWENPSGWIIGLDFGVYSILT-------------------------------SSGGITEATLYFENVTEEYIGNTYT 310 (329)
T ss_dssp CEEEEECTTSCBCCBCSSEEEEEE-------------------------------EETTEEEEEEEESSCCGGGTTCEEE
T ss_pred cEEEEEECCeeeeccCCceeeeec-------------------------------ccCceeEeEEEEEeccHHHCCCcEE
Confidence 8999999987533222 111100 000013566999999999999 999
Q ss_pred EEEEeCCeeEEEEEEEEE
Q psy16852 515 CRAENVAGSVTCTATLSL 532 (579)
Q Consensus 515 C~a~n~~g~~~~~~~l~v 532 (579)
|.|.|..|....++.|.|
T Consensus 311 C~a~N~~G~~~~~~~l~v 328 (329)
T 3oq3_B 311 CRGHNYYFDKTLTTTVVL 328 (329)
T ss_dssp EEEECSSCEEEEEEEEEE
T ss_pred EEEEecCCceEEEEEEEe
Confidence 999999999999988876
No 86
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.97 E-value=5.1e-29 Score=231.85 Aligned_cols=266 Identities=15% Similarity=0.189 Sum_probs=178.7
Q ss_pred CccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeC-C--EEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVE-S--VSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~-~--~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
|.|...+.++.+.+|++++|.|.+.+. +.|++++..+. ....... + ...|.|.+++.+|+|.|+|.|.|
T Consensus 1 P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n 72 (289)
T 3mjg_X 1 LVVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPP----QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHND 72 (289)
T ss_dssp CCBCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCS----EEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC
T ss_pred CeecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCcc----cceeccCCCceeEEEEEccCChhhCEEEEEEEcc
Confidence 566667778999999999999999763 99999998873 1122221 2 47899999999999999999998
Q ss_pred CCeee-EEEEEEEEEecccCCCCCceecCCC--ceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCC
Q psy16852 84 IGGVA-TCSANLIVLEKEESGEAPKFTKPLK--PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160 (579)
Q Consensus 84 ~~g~~-~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~ 160 (579)
..|.. .....+.|..... ..+.+..... .+.+.+|+.+.|.|.+. .|.+.+.|++.+...... ...+...
T Consensus 73 ~~g~~~~~~~~~~v~v~~p--~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~----~~~~~~~ 145 (289)
T 3mjg_X 73 SRGLETDERKRLYIFVPDP--TVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALP----VPYDHQR 145 (289)
T ss_dssp ------CCCEEEEEECCCT--TCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCC----CCEETTT
T ss_pred cCCCCcCcEEeEEEEEECC--CcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccc----eeecCCc
Confidence 87652 2233444433210 1111111111 16688999999999998 678899999875322111 1111111
Q ss_pred CeEEEEECcCCCCCCeEEEEEEEcCCceeEEE-EEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccC
Q psy16852 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECR-ANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTP 239 (579)
Q Consensus 161 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p 239 (579)
+ .+ ...|+|.|+|.+.+..+..... ..+.+.. ..+|.+...+....+.+|+.+.|.|.+.+.|
T Consensus 146 ~--~~-----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~---------~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p 209 (289)
T 3mjg_X 146 G--FS-----GIFEDRSYICKTTIGDREVDSDAYYVYRLQ---------VSSINVSVNAVQTVVRQGENITLMCIVIGNE 209 (289)
T ss_dssp E--EE-----ECCCSSEEEEEEEETTEEEECCCEEEEECC---------CCCCCCEEEESCSEEETTSCEEEEEEEESCS
T ss_pred C--ee-----eeccCcEEEEEEEeCCceeeeeeEEEEecC---------CCCCCcEEeCCcceeEcCCCEEEEEEECCCC
Confidence 1 11 2569999999999876654332 2333321 1244444444556688999999999999999
Q ss_pred CCeEEEEECCEEeccCc--e-EE-----eCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccc
Q psy16852 240 TPEVKWFKNGKEIVSKD--I-ET-----KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA 303 (579)
Q Consensus 240 ~~~v~W~~~~~~i~~~~--~-~~-----~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~ 303 (579)
.+.+.|+++++...... . .. ......|.|.++..+|+|.|+|.|.|..|....+..+.|...+.
T Consensus 210 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~ 281 (289)
T 3mjg_X 210 VVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVES 281 (289)
T ss_dssp SBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC-
T ss_pred CcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEec
Confidence 99999998765433211 1 11 12447899999999999999999999999999998888875443
No 87
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.97 E-value=3.1e-29 Score=229.79 Aligned_cols=239 Identities=18% Similarity=0.235 Sum_probs=175.4
Q ss_pred CceeeeCCCCEEEEEEEEe-eCCC--eeEEEECCEEecCCCCEEEEEeCCEEEEEEcCC---CCCCCE--EEEEEEEcCC
Q psy16852 14 QPVVSHQEQPALFTCKVEG-HPLP--TMTWQKDGTELHATEHYLITTVESVSTLEIINP---TKEDIG--VYTCKATNIG 85 (579)
Q Consensus 14 ~~~~v~~G~~~~l~C~~~~-~~~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~---~~~d~G--~Y~C~~~~~~ 85 (579)
.+..+.+|+.++|.|.+.+ .|.+ .|.|+++|..+.. .....+. .|.+..+ +.+|+| .|+|.+.|..
T Consensus 11 ~~~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~----~~~~~~~--~~~~~~~~~~~~~d~g~g~Y~C~a~n~~ 84 (265)
T 2oz4_A 11 SPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTYGND--SFSAKASVSVTAEDEGTQRLTCAVILGN 84 (265)
T ss_dssp CCSEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC----EEEECSS--EEEEEEEEEECGGGCEEEEEEEEEEETT
T ss_pred cCceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc----eEeeCCC--eEEEEeecccccccCCcceEEEEEecCC
Confidence 3457899999999999998 6766 9999999998864 2222232 4455444 778888 4999999999
Q ss_pred eeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEE
Q psy16852 86 GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 165 (579)
Q Consensus 86 g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l 165 (579)
|.....+.|.|...+ +|.+. .....+.+|+.+.|.|.+. |.+.+.| ++..+... +....|
T Consensus 85 ~~~~~~~~l~V~~~p----~p~~~--~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~----------~~~~~l 144 (265)
T 2oz4_A 85 QSQETLQTVTIYSFP----APNVI--LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPL----------GPRAQL 144 (265)
T ss_dssp EEEEEEEEEEEECCC----CCEEE--ESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCC----------SSEECC
T ss_pred CCcEEEEEEEEeCCC----Cceee--cCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCC----------CCcEEE
Confidence 988888888887643 23333 2345677899999999987 8899999 66655221 123568
Q ss_pred EECcCCCCCCeEEEEEEEcCC-ceeE---EEEEEEEeeccccCCCCccCCCeEecc--CCceeeCCCCeEEEEEEEEccC
Q psy16852 166 SISEATPQDEAVYSVKAVNTF-GRAE---CRANLVLRKATTIDKPRVLEAPTIVRP--LQALLVPKDSTVTLEAEYTGTP 239 (579)
Q Consensus 166 ~i~~~~~~d~G~Y~C~~~~~~-~~~~---~~~~~~v~~~~~~~~~~~~~~p~~~~~--~~~~~~~~g~~~~l~C~~~~~p 239 (579)
.|..+..+|+|.|+|.+.|.. |... ....+.+. .+|.+... +....+.+|+.+.|.|.+.|.|
T Consensus 145 ~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~-----------~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P 213 (265)
T 2oz4_A 145 LLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL-----------YGPRLDERDCPGNWTWPENSQQTPMCQAWGNP 213 (265)
T ss_dssp EEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEE-----------EEEECCGGGSCSEEEEETTCEECCCCCCEEES
T ss_pred EEccccccCCceEEEEEEcCCCCCcccccccEEEEEE-----------eCCccccccCCCccEEcCCCeEEEEeECccCC
Confidence 899999999999999998543 5543 33444443 23333222 3455688999999999999999
Q ss_pred CCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 240 TPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299 (579)
Q Consensus 240 ~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~ 299 (579)
.+.+.|++++..+.... .+ ..++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 214 ~p~i~W~~~~~~~~~~g--------~~--~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 263 (265)
T 2oz4_A 214 LPELKCLKDGTFPLPIG--------ES--VTVTRDLEGTYLCRARSTQGEVTREVTVNVL 263 (265)
T ss_dssp CCEEEEEETTTEECCTT--------SC--EECCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCeEEEEECCcccCCCC--------cE--EEeehhhCeEEEEEEECCCCcEEEEEEEEEe
Confidence 99999999997332211 11 2377899999999999999988888777764
No 88
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.97 E-value=1.5e-28 Score=233.68 Aligned_cols=274 Identities=16% Similarity=0.237 Sum_probs=190.8
Q ss_pred ceecCCCceEEccCCcEEEEEEEEee----cCCeEEEEECC--E-------------EccCCCCceEEE-cCCCCeEEEE
Q psy16852 107 KFTKPLKPVIAEAQSPATLKATVTGR----PTPSICWYRGK--E-------------EILPDNGHTMEF-NPTTGECVLS 166 (579)
Q Consensus 107 ~~~~~~~~~~~~~g~~~~l~C~~~~~----p~~~i~W~~~~--~-------------~~~~~~~~~~~~-~~~~~~~~l~ 166 (579)
.+...+..+.+.+|+.+.|.|.+.+. +.+.+.|++++ . .+......++.. ....+..+|.
T Consensus 16 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~ 95 (331)
T 3u83_A 16 QVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIR 95 (331)
T ss_dssp -----CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCEE
T ss_pred ceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceEE
Confidence 34445566789999999999998765 44689999953 1 111111222222 2233456799
Q ss_pred ECcCCCCCCeEEEEE-EEcCCceeEEEEEEEEeeccccCCCCccCCCeE--eccCCceeeCCC---CeEEEEEE-EEccC
Q psy16852 167 ISEATPQDEAVYSVK-AVNTFGRAECRANLVLRKATTIDKPRVLEAPTI--VRPLQALLVPKD---STVTLEAE-YTGTP 239 (579)
Q Consensus 167 i~~~~~~d~G~Y~C~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~--~~~~~~~~~~~g---~~~~l~C~-~~~~p 239 (579)
|.+++.+|+|.|+|. +.+..+.......+.|. .+|.+ ........+.+| +.+.|.|. +.+.|
T Consensus 96 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~-----------~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p 164 (331)
T 3u83_A 96 LSRLELEDEGVYICEFATFPTGNRESQLNLTVM-----------AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKP 164 (331)
T ss_dssp ECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEE-----------BCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBS
T ss_pred EcccCcccCcEEEEEEEecCCCccEEEEEEEEe-----------cCCcceeecCCCceeecCCCccceEEEEEEecCCcC
Confidence 999999999999998 55556666666666654 34443 223455667778 78999997 77899
Q ss_pred CCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeeccccCc
Q psy16852 240 TPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTAS 319 (579)
Q Consensus 240 ~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~ 319 (579)
.+.+.|++++..... . .... ..
T Consensus 165 ~~~i~W~~~~~~~~~--------------------------------------~--~~~~-~~----------------- 186 (331)
T 3u83_A 165 PSVVSWETRLKGEAE--------------------------------------Y--QEIR-NP----------------- 186 (331)
T ss_dssp CCEEEEEESSCCEEE--------------------------------------E--EEEE-CT-----------------
T ss_pred CceEEEEcCCCCccc--------------------------------------c--ceeE-CC-----------------
Confidence 999999986311000 0 0000 00
Q ss_pred eeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEE
Q psy16852 320 FQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVE 399 (579)
Q Consensus 320 ~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 399 (579)
...+.+ .+.|.|..+..+|+|.|+|.|.|..|....++.|.|.
T Consensus 187 -------------------------------~~~~~~------~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~ 229 (331)
T 3u83_A 187 -------------------------------NGTVTV------ISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQ 229 (331)
T ss_dssp -------------------------------TSCEEE------EEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEE
T ss_pred -------------------------------CCcEEE------EEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEe
Confidence 000000 0158888888899999999999999988888888887
Q ss_pred ecccCCCCCeee-cCCCceeeecCCCeEEEEEEEeeCCCe-EEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCc
Q psy16852 400 EKEESGEAPKFT-KPLKPVIAEAQSPATLKATVTGRPTPS-ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDE 477 (579)
Q Consensus 400 ~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~g~p~~~-v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 477 (579)
. +|.+. .+.....+.+|+.++|.|.+.|.|.|. +.|++++..+.... .+
T Consensus 230 ~------~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~--~~--------------------- 280 (331)
T 3u83_A 230 Y------EPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGV--EA--------------------- 280 (331)
T ss_dssp E------EEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE--EE---------------------
T ss_pred c------CCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccc--ee---------------------
Confidence 6 44444 344556688999999999999999997 99999988774321 00
Q ss_pred eeEEEEeecceeeeeeeCCeeEEEEe-ecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 478 AVYSVKASSTETKIMTDGNRSVLLIS-KITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 478 g~y~c~~~~~~~~~~~~~~~~~l~i~-~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
..+.|.|. ++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 281 ------------------~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 319 (331)
T 3u83_A 281 ------------------QNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT 319 (331)
T ss_dssp ------------------ETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCB
T ss_pred ------------------cCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEe
Confidence 12349999 899999999999999999999999999876
No 89
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.96 E-value=9.6e-30 Score=239.75 Aligned_cols=263 Identities=11% Similarity=0.064 Sum_probs=177.7
Q ss_pred cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
.+-+|.|...|. ..+.+|++++|.|.+.+. .+.+.|+|+|..+.... ........|.|.+++.+|+|.|+|.|.
T Consensus 21 ~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 94 (316)
T 3vh8_G 21 GQDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIF----HGRIFQESFNMSPVTTAHAGNYTCRGS 94 (316)
T ss_dssp ---CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHH----HHCCBSSCEEECSCCGGGCEEEEEEEB
T ss_pred CCCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceee----cCCcceEEEEECCCCcccCeEEEEEEE
Confidence 456788888888 568899999999999877 56899999998754311 011123679999999999999999998
Q ss_pred cCC-----eeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEc
Q psy16852 83 NIG-----GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFN 157 (579)
Q Consensus 83 ~~~-----g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~ 157 (579)
+.. +..+..+.+.|.... .+|.+...+... +.+|+.++|.|.+. .+.+.+.|++++..+........ ..
T Consensus 95 ~~~~~~~~~~~s~~~~l~V~~~~---~~p~~~~~~~~~-v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~-~~ 168 (316)
T 3vh8_G 95 HPHSPTGWSAPSNPVVIMVTGNH---RKPSLLAHPGPL-VKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQ-IH 168 (316)
T ss_dssp CSSSSSSBCCCCCCEEEEEECSS---CCCEEEEESCSE-EETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECE-EE
T ss_pred cCCCCcceecCCCcEEEEEecCC---CCCeEEecCCCc-cCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeee-ec
Confidence 632 233445667775432 234555444444 78999999999985 46679999999886643221111 11
Q ss_pred CCCCeEEEEECcCCCCCCeEEEEEEEcCCcee-----EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEE
Q psy16852 158 PTTGECVLSISEATPQDEAVYSVKAVNTFGRA-----ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLE 232 (579)
Q Consensus 158 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~ 232 (579)
.......|.|.+++.+|+|.|+|.+.|..+.. .....+.+.. ...+|.+...+.. .+.+|+.++|.
T Consensus 169 ~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~--------~~~~p~i~~~~~~-~v~~G~~v~L~ 239 (316)
T 3vh8_G 169 DGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTG--------PYEKPSLSAQPGP-KVQAGESVTLS 239 (316)
T ss_dssp TTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEEC--------SSCCCEEEEESCS-CCCTTSCCEEE
T ss_pred CCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecC--------CCCCCeEEeCCCC-eecCCCcEEEE
Confidence 12234689999999999999999999987631 2223344431 1234555544433 57889999999
Q ss_pred EEEEccCCCeEEEEECCEEeccCceE-E---eCCeEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852 233 AEYTGTPTPEVKWFKNGKEIVSKDIE-T---KDNVTKLVIKQTTKKTTGKYEIRVVNEAGE 289 (579)
Q Consensus 233 C~~~~~p~~~v~W~~~~~~i~~~~~~-~---~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~ 289 (579)
|.+. .|.+.+.|+++|..+...... . ......|.|.+++ |+|.|+|.|.|..+.
T Consensus 240 C~~~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~ 297 (316)
T 3vh8_G 240 CSSR-SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSP 297 (316)
T ss_dssp EEES-SCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBT
T ss_pred EECC-CCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCc
Confidence 9986 577899999999766532211 1 1123689999998 999999999997653
No 90
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.96 E-value=8.8e-29 Score=234.47 Aligned_cols=274 Identities=12% Similarity=0.184 Sum_probs=173.7
Q ss_pred eEeccCCceeeCCCCeEEEEEEEEcc-CCCeEEEEECCEEec----cC------ceEEe-------CCeEEEEEcccCCC
Q psy16852 213 TIVRPLQALLVPKDSTVTLEAEYTGT-PTPEVKWFKNGKEIV----SK------DIETK-------DNVTKLVIKQTTKK 274 (579)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~i~----~~------~~~~~-------~~~~~l~i~~~~~~ 274 (579)
.+..++....+.+|+.+.|.|.+.+. |.+.+.|++++.+.. .. ..... .....|.|.+++.+
T Consensus 5 ~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~ 84 (327)
T 2wng_A 5 QVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPA 84 (327)
T ss_dssp CEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGG
T ss_pred EEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccc
Confidence 34555667789999999999999987 888999999874321 10 11110 34457999999999
Q ss_pred CCeEEEEEEEcCCeeeE-----EEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCC--eEEEEECCEE
Q psy16852 275 TTGKYEIRVVNEAGEAR-----TSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTP--LVTWSHDGTP 347 (579)
Q Consensus 275 d~G~y~C~a~n~~g~~~-----~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~--~i~W~~~~~~ 347 (579)
|+|.|+|.|.|..+... ....+.|...+..+..... ...........+.|.+.|.|++ .+.|+++|..
T Consensus 85 D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~-----~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~ 159 (327)
T 2wng_A 85 DAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGP-----AARATPQHTVSFTCESHGFSPRDITLKWFKNGNE 159 (327)
T ss_dssp GCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECC-----SSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred cCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeecc-----ccccCCCCEEEEEEEEeCccCCCcEEEEEECCEE
Confidence 99999999999765311 2345555544433222111 1111223334567999998876 8999999999
Q ss_pred ccCCCeEEEEECCCC----eEEEEEcccCCCCCEEEEEEEEcCceeE---EEEEEEEEEecccCCCCCeeecCCCceeee
Q psy16852 348 MKEGKEVTIYQDTDG----LCKLAISEVFPENAGLYSCTAVNPVGEA---VAAATLAVEEKEESGEAPKFTKPLKPVIAE 420 (579)
Q Consensus 348 ~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~---~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~ 420 (579)
+............++ .+.|.|.....+|.|.|+|.|.|..+.. ..+..+.+. ...+|.+...+.. +.
T Consensus 160 l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~----v~~~P~i~~~~~~--~~ 233 (327)
T 2wng_A 160 LSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSET----IRVPPTLEVTQQP--VR 233 (327)
T ss_dssp CCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGT----BCBCCEEEEEEEC--CS
T ss_pred ccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccc----cCCCCEEEEecCC--cC
Confidence 876543222111222 2357787777777899999999987752 333333221 1236777654433 77
Q ss_pred cCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCee
Q psy16852 421 AQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRS 498 (579)
Q Consensus 421 ~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~ 498 (579)
+|+.++|.|.+.|.|++ .+.|+++|..+..+.... ......|.|.+. +
T Consensus 234 ~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~----------------~~~~~~g~~~~~--------------~ 283 (327)
T 2wng_A 234 AENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETAST----------------VTENKDGTYNWM--------------S 283 (327)
T ss_dssp STTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCS----------------CEECTTSCEEEE--------------E
T ss_pred CCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCc----------------eEECCCCcEEEE--------------E
Confidence 99999999999996544 899999998875321111 112223444333 3
Q ss_pred EEEEeecccccceeEEEEEEeCCeeEEEE
Q psy16852 499 VLLISKITRDQIGDVTCRAENVAGSVTCT 527 (579)
Q Consensus 499 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 527 (579)
.|.|..+..+|+|.|+|.|.|..|.....
T Consensus 284 ~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~ 312 (327)
T 2wng_A 284 WLLVNVSAHRDDVKLTCQVEHDGQPAVSK 312 (327)
T ss_dssp EEEC-------CCEEEEEEEETTCCCEEE
T ss_pred EEEEccccccCCCEEEEEEEeCCCCCchh
Confidence 49999999999999999999999865433
No 91
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.96 E-value=2e-28 Score=224.35 Aligned_cols=236 Identities=21% Similarity=0.266 Sum_probs=171.3
Q ss_pred eeCCCCeEEEEEEEEc-cCCC--eEEEEECCEEeccCceEEeCCeEEEEEccc---CCCCCe--EEEEEEEcCCeeeEEE
Q psy16852 222 LVPKDSTVTLEAEYTG-TPTP--EVKWFKNGKEIVSKDIETKDNVTKLVIKQT---TKKTTG--KYEIRVVNEAGEARTS 293 (579)
Q Consensus 222 ~~~~g~~~~l~C~~~~-~p~~--~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~---~~~d~G--~y~C~a~n~~g~~~~~ 293 (579)
.+.+|+.++|.|.+.+ .|.+ .+.|+++|..+... ...... .+.+..+ ...|+| .|+|.|.|..|.....
T Consensus 14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~-~~~~~~--~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~ 90 (265)
T 2oz4_A 14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT-VTYGND--SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETL 90 (265)
T ss_dssp EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCCE-EEECSS--EEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEE
T ss_pred eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCce-EeeCCC--eEEEEeecccccccCCcceEEEEEecCCCCcEEE
Confidence 5788999999999998 7776 99999999988652 122222 4555444 677877 4999999999988777
Q ss_pred EEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCC
Q psy16852 294 GSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFP 373 (579)
Q Consensus 294 ~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 373 (579)
..+.|...+.+.+.+. ...........+.|.+. |.+.++| +|..+.... ....|.|..+..
T Consensus 91 ~~l~V~~~p~p~~~~~------~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~---------~~~~l~i~~~~~ 151 (265)
T 2oz4_A 91 QTVTIYSFPAPNVILT------KPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG---------PRAQLLLKATPE 151 (265)
T ss_dssp EEEEEECCCCCEEEES------CSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCS---------SEECCEEECCGG
T ss_pred EEEEEeCCCCceeecC------CceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCC---------CcEEEEEccccc
Confidence 7777765444333321 11111223334457776 8999999 777764322 234788999999
Q ss_pred CCCEEEEEEEEcCc-eeEE---EEEEEEEEecccCCCCCeeecC--CCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEE
Q psy16852 374 ENAGLYSCTAVNPV-GEAV---AAATLAVEEKEESGEAPKFTKP--LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEE 447 (579)
Q Consensus 374 ~d~G~Y~C~a~n~~-g~~~---~~~~l~v~~~~~~~~~p~~~~~--~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~ 447 (579)
+|+|.|+|.|.|.. |... ..+.|.|.. +|.+... +....+.+|+.++|.|.+.|.|.|.+.|++++..
T Consensus 152 ~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~------~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~ 225 (265)
T 2oz4_A 152 DNGRSFSCSATLEVAGQLIHKNQTRELRVLY------GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTF 225 (265)
T ss_dssp GTTEEEEEEEEEECSSSEEEEEEEEEEEEEE------EEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTE
T ss_pred cCCceEEEEEEcCCCCCcccccccEEEEEEe------CCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCcc
Confidence 99999999998544 6554 667788876 3444332 4466789999999999999999999999998863
Q ss_pred cCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEE
Q psy16852 448 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCT 527 (579)
Q Consensus 448 l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 527 (579)
+.... . +. .++.+|+|.|+|.|.|..|....+
T Consensus 226 ~~~~g-----------~-----------------------------------~~--~v~~~d~G~Y~C~a~N~~G~~~~~ 257 (265)
T 2oz4_A 226 PLPIG-----------E-----------------------------------SV--TVTRDLEGTYLCRARSTQGEVTRE 257 (265)
T ss_dssp ECCTT-----------S-----------------------------------CE--ECCGGGCEEEEEEEEETTEEEEEE
T ss_pred cCCCC-----------c-----------------------------------EE--EeehhhCeEEEEEEECCCCcEEEE
Confidence 22111 0 21 377899999999999999999999
Q ss_pred EEEEEe
Q psy16852 528 ATLSLL 533 (579)
Q Consensus 528 ~~l~v~ 533 (579)
+.|.|+
T Consensus 258 ~~l~V~ 263 (265)
T 2oz4_A 258 VTVNVL 263 (265)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999986
No 92
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.96 E-value=1.6e-28 Score=228.42 Aligned_cols=269 Identities=16% Similarity=0.132 Sum_probs=168.6
Q ss_pred cCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCC--eEEEEEcccCCCCCeEEEEEEEcCCee-eEEE
Q psy16852 217 PLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDN--VTKLVIKQTTKKTTGKYEIRVVNEAGE-ARTS 293 (579)
Q Consensus 217 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~a~n~~g~-~~~~ 293 (579)
......+.+|+.+.|.|.+.+. +.|++++..+.......... ...|.|.+++.+|+|.|+|.|.|..|. ...+
T Consensus 6 ~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~ 81 (289)
T 3mjg_X 6 PGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDER 81 (289)
T ss_dssp SCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCSEEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CCC
T ss_pred CCCeEEEeCCCcEEEEEeccce----EEEECCCCCcccceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCcE
Confidence 3445668899999999998764 99999998763221111122 478999999999999999999998865 2233
Q ss_pred EEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCC
Q psy16852 294 GSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFP 373 (579)
Q Consensus 294 ~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 373 (579)
..+.|.+.......+..................+.|.+. .|.+.++|++.+........ .. ... .+. ..
T Consensus 82 ~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~---~~-~~~--~~~----~~ 150 (289)
T 3mjg_X 82 KRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVP---YD-HQR--GFS----GI 150 (289)
T ss_dssp EEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCC---EE-TTT--EEE----EC
T ss_pred EeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCcccee---ec-CCc--Cee----ee
Confidence 445555442221111100000000011112223346666 67788889886522221111 01 111 111 25
Q ss_pred CCCEEEEEEEEcCceeEEE-EEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCC
Q psy16852 374 ENAGLYSCTAVNPVGEAVA-AATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN 452 (579)
Q Consensus 374 ~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~ 452 (579)
.|+|.|+|.|.|..+.... ...+.|... .+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++.......
T Consensus 151 ~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~----~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~ 226 (289)
T 3mjg_X 151 FEDRSYICKTTIGDREVDSDAYYVYRLQV----SSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLV 226 (289)
T ss_dssp CCSSEEEEEEEETTEEEECCCEEEEECCC----CCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCC
T ss_pred ccCcEEEEEEEeCCceeeeeeEEEEecCC----CCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcc
Confidence 7999999999987765543 345555542 35666665566779999999999999999999999998876543221
Q ss_pred CeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 453 GHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 453 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
....... .. ......+.|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 227 ~~~~~~~--------------~~----------------~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v 276 (289)
T 3mjg_X 227 EPVTDFL--------------LD----------------MPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276 (289)
T ss_dssp CCEEEES--------------CT----------------TTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEE
T ss_pred ccccccc--------------CC----------------cceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEE
Confidence 1111100 00 00123466999999999999999999999999999999998
Q ss_pred ee
Q psy16852 533 LP 534 (579)
Q Consensus 533 ~~ 534 (579)
..
T Consensus 277 ~~ 278 (289)
T 3mjg_X 277 TV 278 (289)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 93
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.96 E-value=2.3e-28 Score=227.85 Aligned_cols=274 Identities=15% Similarity=0.160 Sum_probs=187.5
Q ss_pred CCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGE 289 (579)
Q Consensus 210 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~ 289 (579)
.+|.+...+....+.+|+.+.|.|.+.+. +.|++++... ...........|.|.+++.+|+|.|+|.+.|..+.
T Consensus 3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~ 76 (292)
T 4dkd_C 3 SIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSPH--WTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLG 76 (292)
T ss_dssp -CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCSS--CEECCBTTEEEEEESSCCGGGCSCEEECCCC----
T ss_pred CCceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCCc--eEEeccCceEEEEEcccccccCEEEEEEEccCCCC
Confidence 46777777778889999999999998763 8999765321 11222345679999999999999999999998777
Q ss_pred eEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCC--CeEEEEEC-CEEccCCCeEEEEECCCCeEEE
Q psy16852 290 ARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPT--PLVTWSHD-GTPMKEGKEVTIYQDTDGLCKL 366 (579)
Q Consensus 290 ~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~--~~i~W~~~-~~~~~~~~~~~~~~~~~~~~~l 366 (579)
....+.+.|...+........... ........+.|.+.+ |. +.+.|+++ +..+.......... .+ .|
T Consensus 77 ~~~~~~l~V~~~~~~~~~~~~~~~-----v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~--~~--~L 146 (292)
T 4dkd_C 77 GSAAIHLYVKDPARPWNVLAQEVV-----VFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFSP--WH--GF 146 (292)
T ss_dssp CCEEECCEECCSSCCEEESCSEEE-----EETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECCS--SS--CC
T ss_pred cceEEEEEEcCccccccccCCeEE-----EcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccccC--Cc--eE
Confidence 655666555433322111111111 111222334588887 44 78999987 55555544443221 22 49
Q ss_pred EEcccCCCCCEEEEEEEEcCceeEEE-EEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCC-CeEEEeeC
Q psy16852 367 AISEVFPENAGLYSCTAVNPVGEAVA-AATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT-PSICWYRG 444 (579)
Q Consensus 367 ~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-~~v~W~~~ 444 (579)
.|.++..+|+|.|+|.|.|..+.... .+.|.|... ...+|.+...+....+.+|+.++|.|.+.+.|+ +.+.|+++
T Consensus 147 ~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~--~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~ 224 (292)
T 4dkd_C 147 TIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKV--IPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHN 224 (292)
T ss_dssp EETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECC--CCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBS
T ss_pred EECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCC--CCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCC
Confidence 99999999999999999988775543 677777752 223778877777777789999999999998775 47889998
Q ss_pred CEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeE
Q psy16852 445 KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV 524 (579)
Q Consensus 445 ~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 524 (579)
+..+.......... +. ....+.|+|.+++.+|+|.|+|.|.|..|..
T Consensus 225 ~~~~~~~~~~~~~~-------------------~~--------------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~ 271 (292)
T 4dkd_C 225 NTKLAIPQQSDFHN-------------------NR--------------YQKVLTLNLDQVDFQHAGNYSCVASNVQGKH 271 (292)
T ss_dssp SCCCCCCBEEEEET-------------------TE--------------EEEEEEEEESSCCTTSCEEEEEEEECSSCEE
T ss_pred CcccccCccceecc-------------------ce--------------eeeEEEEEECccChhcCeEEEEEEecCCCCc
Confidence 87664332211100 00 1123569999999999999999999999999
Q ss_pred EEEEEEEEee
Q psy16852 525 TCTATLSLLP 534 (579)
Q Consensus 525 ~~~~~l~v~~ 534 (579)
..++.|.|..
T Consensus 272 ~~~~~l~V~~ 281 (292)
T 4dkd_C 272 STSMFFRVVE 281 (292)
T ss_dssp EEEEEECC--
T ss_pred eeEEEEEEee
Confidence 9999999863
No 94
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.96 E-value=2.5e-28 Score=230.58 Aligned_cols=278 Identities=15% Similarity=0.156 Sum_probs=178.4
Q ss_pred cCCCCccccccCceeeeCC--CCEEEEEEEEee-C-CCeeEEEECCEEecCCCCE-EEEEeCC----EEEEEEcCCCCCC
Q psy16852 3 EVLAPRFIEKIQPVVSHQE--QPALFTCKVEGH-P-LPTMTWQKDGTELHATEHY-LITTVES----VSTLEIINPTKED 73 (579)
Q Consensus 3 ~~~~p~~~~~p~~~~v~~G--~~~~l~C~~~~~-~-~~~v~W~~~g~~~~~~~~~-~~~~~~~----~~~L~i~~~~~~d 73 (579)
+..||.+...+.......| +.++|.|.+.+. | .+.|+|+|||..+...... .....++ .+.|.|.....+|
T Consensus 4 ~~~~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d 83 (323)
T 2wqr_A 4 DFTPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLS 83 (323)
T ss_dssp CCCCCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHT
T ss_pred CCCCCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCC
Confidence 4567887776555444445 699999999886 3 4689999999988654321 1111122 2468888888889
Q ss_pred CEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeec-CC---eEEEEECCEEccCC
Q psy16852 74 IGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP-TP---SICWYRGKEEILPD 149 (579)
Q Consensus 74 ~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~---~i~W~~~~~~~~~~ 149 (579)
+|.|+|+|.|..+.....+.+.+... ...++.+...+....+.+|+.+.|.|.+.+.+ .+ .|.||++++.....
T Consensus 84 ~g~Y~C~a~n~~~~~~~~~~~~~~~~--~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~ 161 (323)
T 2wqr_A 84 DRTYTCQVTYQGHTFEDSTKKCADSN--PRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNH 161 (323)
T ss_dssp TCCEEEEEEETTEEEEEEECCCCCSS--GGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCC
T ss_pred CCcEEEEEEeCCCCcceeeecCCCCC--CCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCccccc
Confidence 99999999998776544332211100 01122223344445577899999999998864 45 99999976443322
Q ss_pred CCceEEEcCCC---CeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCC
Q psy16852 150 NGHTMEFNPTT---GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKD 226 (579)
Q Consensus 150 ~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 226 (579)
..........+ ..+.|.|.++..+|+|.|+|.+.|..+..... +.+.... ....+|.+...+.......|
T Consensus 162 ~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~--~~v~~~~-----~~~~~P~v~~~~~~~~~~~g 234 (323)
T 2wqr_A 162 STRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALM--RSTTKTS-----GPRAAPEVYAFATPEWPGSR 234 (323)
T ss_dssp CCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEE--EEECCCC-----SCCBCCEEEEEECCCCTTCT
T ss_pred ccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCee--eEEEccC-----CCCCCCEEEEeCCChHHhcC
Confidence 11111111111 23579999999999999999999986433222 2222100 01234554332222122349
Q ss_pred CeEEEEEEEEc-cCCC-eEEEEECCEEeccCceEE----------eCCeEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852 227 STVTLEAEYTG-TPTP-EVKWFKNGKEIVSKDIET----------KDNVTKLVIKQTTKKTTGKYEIRVVNEAGE 289 (579)
Q Consensus 227 ~~~~l~C~~~~-~p~~-~v~W~~~~~~i~~~~~~~----------~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~ 289 (579)
+.++|.|.+.+ .|.+ .+.|+++|..+....... ....+.|.|..+..+|+|.|+|.|.|....
T Consensus 235 ~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 235 DKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS 309 (323)
T ss_dssp TEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred CcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence 99999999998 4544 899999999886542111 112357999999999999999999998765
No 95
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.95 E-value=1.2e-26 Score=201.98 Aligned_cols=188 Identities=33% Similarity=0.518 Sum_probs=159.6
Q ss_pred CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCC--CEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE--HYLITTVESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
.||.|...|.++.+.+|++++|.|.+.+.|.+.+.|+++|..+.... ++......+...|.|.+++.+|+|.|+|.+.
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 83 (194)
T 2a38_A 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKAT 83 (194)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEE
Confidence 47899999999999999999999999999999999999999887653 5666677778999999999999999999999
Q ss_pred cCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCe
Q psy16852 83 NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 162 (579)
Q Consensus 83 ~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~ 162 (579)
+..|.......+.|.... .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.......+..+ +..
T Consensus 84 n~~~~~~~~~~l~v~~~~---~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~--~~~ 158 (194)
T 2a38_A 84 NGSGQATSTAELLVKAET---APPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQE--GDL 158 (194)
T ss_dssp ETTEEEEEEEEEEEECCC---EEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEE--TTE
T ss_pred cCCceEeEEEEEEEccCC---CCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEc--CCE
Confidence 999988888888887432 244566666778899999999999999999999999999999876665554433 345
Q ss_pred EEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEE
Q psy16852 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANLVL 197 (579)
Q Consensus 163 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v 197 (579)
..|.|.++..+|+|.|+|.|.|..|....+..+.|
T Consensus 159 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 193 (194)
T 2a38_A 159 YSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193 (194)
T ss_dssp EEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence 68999999999999999999999998777666654
No 96
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.95 E-value=2.8e-27 Score=225.40 Aligned_cols=276 Identities=15% Similarity=0.175 Sum_probs=175.9
Q ss_pred ccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEEC--CEEe-----------------cCCCCEEEEEe--CCEEEEEE
Q psy16852 10 IEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKD--GTEL-----------------HATEHYLITTV--ESVSTLEI 66 (579)
Q Consensus 10 ~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~--g~~~-----------------~~~~~~~~~~~--~~~~~L~i 66 (579)
+..|.++.+.+|++++|.|.+.+.+ .+.+.|||+ |..+ ....++.+... .+..+|+|
T Consensus 4 l~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (344)
T 1za6_B 4 LVQSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVEL 83 (344)
T ss_dssp EEECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEE
T ss_pred eeCCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEE
Confidence 3457788999999999999998763 568999997 3322 01345555543 35689999
Q ss_pred cCCCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC-CeEEEEECCE
Q psy16852 67 INPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT-PSICWYRGKE 144 (579)
Q Consensus 67 ~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~ 144 (579)
.+++.+|+|.|+|.+.+..+.....+.|.|...+ ..+|.+........+.+|+.++|.|.+.+. |. +.|.|++++.
T Consensus 84 ~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~ 161 (344)
T 1za6_B 84 SSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSAS--TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGAL 161 (344)
T ss_dssp CSCCGGGCEEEEEEETTTTCEECCCEEEEECSSC--CBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTB
T ss_pred CCCCcccCEEEEEEEecCcceecCcEEEEEecCC--CCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCc
Confidence 9999999999999998865544455677776421 123444332222345789999999999887 54 7999999987
Q ss_pred EccCCCCceEEEcCCC---CeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeec------------cccC-CCCc
Q psy16852 145 EILPDNGHTMEFNPTT---GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKA------------TTID-KPRV 208 (579)
Q Consensus 145 ~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~------------~~~~-~~~~ 208 (579)
.+........ ....+ ....|.|.++..+| |.|+|.|.|..+.......+.+.+. .... ....
T Consensus 162 ~~~~~~~~~~-~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~ 239 (344)
T 1za6_B 162 TSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQ 239 (344)
T ss_dssp CTTEEECCCE-ECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------C
T ss_pred cCceeECCCe-ECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCC
Confidence 5321000000 00000 12479999998888 9999999998876544333321110 0000 0012
Q ss_pred cCCCeEeccCCceeeCCCCeEEEEEEEEcc-C-CCeEEEEECCEEeccCc---eEEe-C----CeEEEEEcccCCCCCeE
Q psy16852 209 LEAPTIVRPLQALLVPKDSTVTLEAEYTGT-P-TPEVKWFKNGKEIVSKD---IETK-D----NVTKLVIKQTTKKTTGK 278 (579)
Q Consensus 209 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~v~W~~~~~~i~~~~---~~~~-~----~~~~l~i~~~~~~d~G~ 278 (579)
..+|.+...........|..+.|.|.+.|. | .+.+.|+++|..+.... .... + ..+.|.|.....+|.|.
T Consensus 240 ~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ 319 (344)
T 1za6_B 240 PREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNV 319 (344)
T ss_dssp CBCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCE
T ss_pred CcCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccCCCe
Confidence 245554433322222346669999999985 4 35899999998775422 1111 1 12456677776778999
Q ss_pred EEEEEEcCCee
Q psy16852 279 YEIRVVNEAGE 289 (579)
Q Consensus 279 y~C~a~n~~g~ 289 (579)
|+|+|.|....
T Consensus 320 YtC~a~~~~l~ 330 (344)
T 1za6_B 320 FSCSVMHEALH 330 (344)
T ss_dssp EEEEEECTTST
T ss_pred EEEEEEcCCCC
Confidence 99999997643
No 97
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.95 E-value=8.9e-28 Score=226.27 Aligned_cols=265 Identities=12% Similarity=0.071 Sum_probs=167.4
Q ss_pred cCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCe
Q psy16852 209 LEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAG 288 (579)
Q Consensus 209 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g 288 (579)
..+|.+...+. ..+.+|++++|.|.+.+. .+.+.|+|+|..+.... ........|.|.+++.+|+|.|+|.|.+..+
T Consensus 22 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~ 98 (316)
T 3vh8_G 22 QDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIF-HGRIFQESFNMSPVTTAHAGNYTCRGSHPHS 98 (316)
T ss_dssp --CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHH-HHCCBSSCEEECSCCGGGCEEEEEEEBCSSS
T ss_pred CCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceee-cCCcceEEEEECCCCcccCeEEEEEEEcCCC
Confidence 35777776666 457799999999999877 67999999997654321 1122345799999999999999999986322
Q ss_pred -----eeEEEEEEEEEecc-ceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCC
Q psy16852 289 -----EARTSGSVTITVAE-AETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDG 362 (579)
Q Consensus 289 -----~~~~~~~~~v~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~ 362 (579)
.....+.+.|.... .+.+..... . .........+.|.+. .+.+.+.|++++..+..............
T Consensus 99 ~~~~~~~s~~~~l~V~~~~~~p~~~~~~~----~-~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~ 172 (316)
T 3vh8_G 99 PTGWSAPSNPVVIMVTGNHRKPSLLAHPG----P-LVKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQIHDGVS 172 (316)
T ss_dssp SSSBCCCCCCEEEEEECSSCCCEEEEESC----S-EEETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECEEETTEE
T ss_pred CcceecCCCcEEEEEecCCCCCeEEecCC----C-ccCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeeeecCCCc
Confidence 12233444443222 111211110 0 011122233457774 45678999999987754332222222334
Q ss_pred eEEEEEcccCCCCCEEEEEEEEcCcee-----EEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCC
Q psy16852 363 LCKLAISEVFPENAGLYSCTAVNPVGE-----AVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP 437 (579)
Q Consensus 363 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~-----~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~ 437 (579)
...|.|.++..+|+|.|+|.|.|..|. ......|.|.... .+|.+...+. ..+.+|+.++|.|.+. .|.+
T Consensus 173 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~---~~p~i~~~~~-~~v~~G~~v~L~C~~~-~~~~ 247 (316)
T 3vh8_G 173 KANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPY---EKPSLSAQPG-PKVQAGESVTLSCSSR-SSYD 247 (316)
T ss_dssp EEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSS---CCCEEEEESC-SCCCTTSCCEEEEEES-SCCS
T ss_pred eEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCC---CCCeEEeCCC-CeecCCCcEEEEEECC-CCCc
Confidence 458999999999999999999998774 1445566666422 3566655443 3678999999999997 5788
Q ss_pred eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEE
Q psy16852 438 SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRA 517 (579)
Q Consensus 438 ~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a 517 (579)
.+.|+|+|..+........ .......+.|.|.+++ |+|.|+|.|
T Consensus 248 ~~~W~k~g~~~~~~~~~~~----------------------------------~~~~~~~~~L~i~~v~--D~G~Y~C~a 291 (316)
T 3vh8_G 248 MYHLSREGGAHERRLPAVR----------------------------------KVNRTFQADFPLGPAT--HGGTYRCFG 291 (316)
T ss_dssp EEEEEETTSSCCEEEECEE----------------------------------CTTSCEEEEEECC-------CEEEEEE
T ss_pred EEEEEECCCcCCCceecee----------------------------------ccCCceeEEEEcCCcC--CCEEEEEEe
Confidence 9999999876532110000 0001123569999999 999999999
Q ss_pred EeCCee
Q psy16852 518 ENVAGS 523 (579)
Q Consensus 518 ~n~~g~ 523 (579)
.|..+.
T Consensus 292 ~n~~~~ 297 (316)
T 3vh8_G 292 SFRHSP 297 (316)
T ss_dssp EBTTBT
T ss_pred ecCCCc
Confidence 998764
No 98
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.95 E-value=1.5e-25 Score=195.49 Aligned_cols=191 Identities=28% Similarity=0.426 Sum_probs=157.0
Q ss_pred CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCC-CCEEEEE-eCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHAT-EHYLITT-VESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~-~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
.||.|...|.++.+.+|+.++|.|.+.+.|.+.+.|+++|..+... .++.... ..+...|.|.+++.+|+|.|+|.+.
T Consensus 3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (197)
T 2j8h_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT 82 (197)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEE
T ss_pred CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEE
Confidence 5899999999999999999999999999998999999999998754 4555443 3456799999999999999999999
Q ss_pred cCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCe
Q psy16852 83 NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 162 (579)
Q Consensus 83 ~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~ 162 (579)
|..|.....+.+.|...+.... +.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....+..+... ...
T Consensus 83 n~~g~~~~~~~l~V~~~p~~~~-~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~--~~~ 159 (197)
T 2j8h_A 83 NQGGSVSGTASLEVEVPAKIHL-PKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT--RSF 159 (197)
T ss_dssp ETTEEEEEEEEEEEEEEEEECC-SSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEEC--SSE
T ss_pred ECCCceeEEEEEEEcCCCcCCC-CccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEc--CCc
Confidence 9999888888888876554322 2223333456788999999999999999999999999998876665555433 346
Q ss_pred EEEEECc-CCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852 163 CVLSISE-ATPQDEAVYSVKAVNTFGRAECRANLVLR 198 (579)
Q Consensus 163 ~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~ 198 (579)
..|.|.+ +..+|+|.|+|.|.|..|.......+.|.
T Consensus 160 ~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 196 (197)
T 2j8h_A 160 TSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196 (197)
T ss_dssp EEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence 7899999 99999999999999999987777666653
No 99
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.95 E-value=2.3e-25 Score=194.34 Aligned_cols=190 Identities=24% Similarity=0.430 Sum_probs=159.7
Q ss_pred CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
..||.|...|.++.+.+|+.++|.|.+.+.|.+.+.|++++..+....++.....+...+|.|.+++.+|+|.|+|.+.|
T Consensus 5 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n 84 (197)
T 3lcy_A 5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATN 84 (197)
T ss_dssp CEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEEC
T ss_pred CCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEEC
Confidence 35789999999999999999999999999999999999999999888888888777788999999999999999999999
Q ss_pred CCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeE
Q psy16852 84 IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163 (579)
Q Consensus 84 ~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~ 163 (579)
..|.......+.|...+..... ........+.+|+.+.|.|.+.+.|.+.+.|++++..+....+..+... ....
T Consensus 85 ~~~~~~~~~~l~v~~~p~~~~~---~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~--~~~~ 159 (197)
T 3lcy_A 85 EVGEVETSSKLLLQATPQFHPG---YPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENT--EHYT 159 (197)
T ss_dssp SSCEEEEEEEEEEEEEEEECTT---SCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEC--SSEE
T ss_pred CCCceeEEEEEEEEcCCCCCCC---ccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEc--CCEE
Confidence 9888888888888765432111 1123445678899999999999999999999999999877666555433 3447
Q ss_pred EEEECcCCC-CCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852 164 VLSISEATP-QDEAVYSVKAVNTFGRAECRANLVLR 198 (579)
Q Consensus 164 ~l~i~~~~~-~d~G~Y~C~~~~~~~~~~~~~~~~v~ 198 (579)
.|.|.++.. +|+|.|+|.|.|..|.......+.|.
T Consensus 160 ~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 195 (197)
T 3lcy_A 160 HLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195 (197)
T ss_dssp EEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred EEEEccccchhhCceEEEEEEcCcCceEEEEEEEEe
Confidence 899999995 89999999999999988777776654
No 100
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.95 E-value=2.2e-26 Score=200.71 Aligned_cols=185 Identities=21% Similarity=0.323 Sum_probs=141.5
Q ss_pred CCCccccccCceeeeCCCCEEEEEEEEe-eCCCeeEEEECCEEecCCCCEEEEEeC--CEEEEEEcCCCCCCCEEEEEEE
Q psy16852 5 LAPRFIEKIQPVVSHQEQPALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVE--SVSTLEIINPTKEDIGVYTCKA 81 (579)
Q Consensus 5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~-~~~~~v~W~~~g~~~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~ 81 (579)
++|.|...+ ++.+.+|+.+.|.|.+.+ .|.+.|+|++||+.+..+.++.+.... +..+|.|.+++.+|+|.|+|.|
T Consensus 2 ~~p~~~~~~-~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a 80 (207)
T 3rbs_A 2 IDPFTKSEL-AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQL 80 (207)
T ss_dssp ----CCEEE-EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEE
T ss_pred CCCeeecCC-ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEE
Confidence 678777755 688999999999999964 688999999999999888777776654 5678999999999999999999
Q ss_pred EcCCeeeEEEEEEEEEeccc---------------CCCCCceecCCCceEEccCCcEEEEEEEEee-cCCeEEEEECCEE
Q psy16852 82 TNIGGVATCSANLIVLEKEE---------------SGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTPSICWYRGKEE 145 (579)
Q Consensus 82 ~~~~g~~~~~~~~~v~~~~~---------------~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~~~~ 145 (579)
.| |.......+.+..... ...+|.+.... ...+.+|+.+.|.|.+.|. |.+.|+|+|++..
T Consensus 81 ~N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~ 157 (207)
T 3rbs_A 81 QD--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDERE 157 (207)
T ss_dssp EE--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEE
T ss_pred EC--CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEE
Confidence 99 4444434433221100 00245555444 4678899999999999998 8999999999999
Q ss_pred ccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEE
Q psy16852 146 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVL 197 (579)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v 197 (579)
+..+.+. ....+..+|.|.++..+|+|.|+|.|.|..|....+..+..
T Consensus 158 l~~~~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~ 205 (207)
T 3rbs_A 158 ISVDEKH----DFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205 (207)
T ss_dssp ECCCCCC----CCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred CCCCCce----EcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence 8765432 22345568999999999999999999999998888776653
No 101
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.94 E-value=1.6e-25 Score=197.58 Aligned_cols=195 Identities=25% Similarity=0.382 Sum_probs=153.7
Q ss_pred CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEe-CCEEEEEEcCC-CCCCCEEEEEEE
Q psy16852 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTV-ESVSTLEIINP-TKEDIGVYTCKA 81 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~-~~~~~L~i~~~-~~~d~G~Y~C~~ 81 (579)
..||.|...|.++.+.+|+.+.|.|.+.|.|.+.+.|+++|..+........... .....|.|.++ +.+|+|.|+|.+
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a 83 (212)
T 2yd6_A 4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA 83 (212)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEE
T ss_pred CCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEE
Confidence 4689999999999999999999999999999999999999999876543333322 34678999999 599999999999
Q ss_pred EcCCeeeEEEEEEEEEecccC-CCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCC-CceEEEcCC
Q psy16852 82 TNIGGVATCSANLIVLEKEES-GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN-GHTMEFNPT 159 (579)
Q Consensus 82 ~~~~g~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~~~~~~~ 159 (579)
.|..|.....+.|.|...+.. ...|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.... ...+.....
T Consensus 84 ~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~ 163 (212)
T 2yd6_A 84 SNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRS 163 (212)
T ss_dssp EETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEE
T ss_pred EcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEec
Confidence 999998888888888765422 233566666677788899999999999999999999999999886542 222322222
Q ss_pred CCeEEEEECcCCCCCCeEEEEEEEcCCceeEEE-EEEEEe
Q psy16852 160 TGECVLSISEATPQDEAVYSVKAVNTFGRAECR-ANLVLR 198 (579)
Q Consensus 160 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~-~~~~v~ 198 (579)
.....|.|.++..+|+|.|+|.|.|..|....+ +.+.+.
T Consensus 164 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~ 203 (212)
T 2yd6_A 164 ESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR 203 (212)
T ss_dssp TTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred CCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEE
Confidence 446789999999999999999999999976543 444443
No 102
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.94 E-value=2.8e-25 Score=195.96 Aligned_cols=190 Identities=24% Similarity=0.399 Sum_probs=155.7
Q ss_pred CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEec-CCCCEEEEEe-CCEEEEEEcCCCC-CCCEEEEEE
Q psy16852 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELH-ATEHYLITTV-ESVSTLEIINPTK-EDIGVYTCK 80 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~-~~~~~~~~~~-~~~~~L~i~~~~~-~d~G~Y~C~ 80 (579)
..||.|...|.++.+.+|+.++|.|.+.+.|.+.+.|+++|..+. ...++..... .+...|.|.+++. +|+|.|+|.
T Consensus 4 ~~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~ 83 (212)
T 2yd1_A 4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECV 83 (212)
T ss_dssp -CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEE
T ss_pred CCCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEE
Confidence 368999999999999999999999999999999999999999987 4556665544 4458999999999 999999999
Q ss_pred EEcCCee-eEEEEEEEEEecccCC-CCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcC
Q psy16852 81 ATNIGGV-ATCSANLIVLEKEESG-EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP 158 (579)
Q Consensus 81 ~~~~~g~-~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~ 158 (579)
+.|..|. ....+.|.|...+..+ ..|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..........+
T Consensus 84 ~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~- 162 (212)
T 2yd1_A 84 AENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKD- 162 (212)
T ss_dssp EECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEET-
T ss_pred EEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEccC-
Confidence 9998887 6777888887654221 235666667778888999999999999999999999999998876433222221
Q ss_pred CCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEE-EEEEEe
Q psy16852 159 TTGECVLSISEATPQDEAVYSVKAVNTFGRAECR-ANLVLR 198 (579)
Q Consensus 159 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~-~~~~v~ 198 (579)
+.|.|.++..+|+|.|+|.|.|..|..... +.+.|.
T Consensus 163 ----~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~ 199 (212)
T 2yd1_A 163 ----GFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVK 199 (212)
T ss_dssp ----TEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred ----CeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEE
Confidence 279999999999999999999999987654 566665
No 103
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.94 E-value=7.3e-25 Score=190.62 Aligned_cols=177 Identities=19% Similarity=0.319 Sum_probs=144.7
Q ss_pred CCccccccCceeeeCCCCEEEEEEEE-eeCCCeeEEEECCEEecCCC--CEEEEEeCC-------EEEEEEcCCCCCCCE
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHATE--HYLITTVES-------VSTLEIINPTKEDIG 75 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~-~~~~~~v~W~~~g~~~~~~~--~~~~~~~~~-------~~~L~i~~~~~~d~G 75 (579)
||.|+..|.++.+.+|++++|.|.+. +.|.+.+.|+++|..+.... ++++..... ...|.|.+++.+|+|
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 81 (195)
T 2c5d_C 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG 81 (195)
T ss_dssp CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence 68999999999999999999999998 88888999999999987663 333333332 578999999999999
Q ss_pred EEEEEEEcCCeeeEEE-EEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCC-eEEEEECCEEccCCCCce
Q psy16852 76 VYTCKATNIGGVATCS-ANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHT 153 (579)
Q Consensus 76 ~Y~C~~~~~~g~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~ 153 (579)
.|+|.+.+..+..... +.+.|.. +|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+......
T Consensus 82 ~Y~C~~~~~~~~~~~~~~~l~V~~------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~- 154 (195)
T 2c5d_C 82 QYQCLVFLGHQTFVSQPGYVGLEG------LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH- 154 (195)
T ss_dssp EEEEEEEETTEEEECCCEEEEECC------SCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS-
T ss_pred EEEEEEEeCCCceecccEEEEEec------CCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc-
Confidence 9999999988765443 7777753 4566666677888999999999999999999 99999999887655432
Q ss_pred EEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeE-EEEEEEE
Q psy16852 154 MEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAE-CRANLVL 197 (579)
Q Consensus 154 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~~~v 197 (579)
.....|.|.++. |+|.|+|.|.|..|... ....+.|
T Consensus 155 ------~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 155 ------GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp ------SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred ------CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence 234689999987 89999999999998765 4555554
No 104
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.94 E-value=1.8e-25 Score=211.07 Aligned_cols=263 Identities=16% Similarity=0.238 Sum_probs=159.3
Q ss_pred CeEEEEEEEEcc-C-CCeEEEEECCEEeccCce----EEeCC----eEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEE
Q psy16852 227 STVTLEAEYTGT-P-TPEVKWFKNGKEIVSKDI----ETKDN----VTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSV 296 (579)
Q Consensus 227 ~~~~l~C~~~~~-p-~~~v~W~~~~~~i~~~~~----~~~~~----~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~ 296 (579)
+.+.|.|.+.+. | .+.+.|+++|..+..... ....+ .+.|.|.....+|+|.|+|+|.|..+.....+.+
T Consensus 25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~ 104 (323)
T 2wqr_A 25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKK 104 (323)
T ss_dssp SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEECC
T ss_pred CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceeeec
Confidence 699999999985 4 359999999998875431 11111 2467788887889999999999988765433221
Q ss_pred EEE-eccceeeeeeeeeeccccCceeeeecCeeEEEeee-CCC---eEEEEECC-EEccCCCeEEEEECCC----CeEEE
Q psy16852 297 TIT-VAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGK-PTP---LVTWSHDG-TPMKEGKEVTIYQDTD----GLCKL 366 (579)
Q Consensus 297 ~v~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~-p~~---~i~W~~~~-~~~~~~~~~~~~~~~~----~~~~l 366 (579)
.+. ....+.+.+.-. ............+.|.+.|. |.+ .+.|++++ ..+........ ...+ ..+.|
T Consensus 105 ~~~~~~~~p~v~~~~p---~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~-~~~~g~~~~~~~L 180 (323)
T 2wqr_A 105 CADSNPRGVSAYLSRP---SPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEE-KQRNGTLTVTSTL 180 (323)
T ss_dssp CCCSSGGGCEEEECCC---CHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEE-ECTTSCEEEEEEE
T ss_pred CCCCCCCCCEEEEcCC---CHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCc-cCCCCCEEEEEEE
Confidence 000 001111111100 00001112233456888886 455 89999975 44433222211 1111 23479
Q ss_pred EEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEee-CCC-eEEEeeC
Q psy16852 367 AISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP-SICWYRG 444 (579)
Q Consensus 367 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~v~W~~~ 444 (579)
.|.++..+|+|.|+|.|.|..+... ..+.|........+|.+...+.......|+.++|.|.+.|. |++ .|.|+++
T Consensus 181 ~I~~~~~~D~G~Y~C~a~n~~~~~~--~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~ 258 (323)
T 2wqr_A 181 PVGTRDWIEGETYQCRVTHPHLPRA--LMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHN 258 (323)
T ss_dssp ECCHHHHHTTCCEEEEEECTTSSSC--EEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred EECHHHccCCCCEEEEEECCCCCCC--eeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEEC
Confidence 9999999999999999999864332 23333221112235665432222222239999999999985 443 8999999
Q ss_pred CEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCee
Q psy16852 445 KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523 (579)
Q Consensus 445 ~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 523 (579)
|..+.... +.. ........|.|.. .+.|.|..+..+|+|.|+|.|.|..+.
T Consensus 259 g~~l~~~~-~~~-------------~~~~~~~~g~~~~--------------~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 259 EVQLPDAR-HST-------------TQPRKTKGSGFFV--------------FSRLEVTRAEWEQKDEFICRAVHEAAS 309 (323)
T ss_dssp TEECCGGG-EEE-------------CCCEECSSSSEEE--------------EEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred CEECCCCc-eee-------------cCcccCCCCcEEE--------------EEEEEEChHHccCCCEEEEEEEeCCCC
Confidence 99885431 111 0111112233322 345999999999999999999999876
No 105
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.93 E-value=2.5e-24 Score=186.30 Aligned_cols=180 Identities=22% Similarity=0.318 Sum_probs=144.3
Q ss_pred CCccccccCceeeeC-CCCEEEEEEEEeeCC--CeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 6 APRFIEKIQPVVSHQ-EQPALFTCKVEGHPL--PTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~-G~~~~l~C~~~~~~~--~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
||.|.. +....+.+ |+.++|.|.+.+.+. +.+.|+++|..+....... ....|.|.+++.+|+|.|+|.+.
T Consensus 3 ~P~i~~-~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~ 76 (190)
T 2wv3_A 3 EPRIVT-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-----SNMEYRINKPRAEDSGEYHCVYH 76 (190)
T ss_dssp CCEEEE-CCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-----SEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCcccc-cceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-----ccEEEEEecCCcccCEEEEEEEE
Confidence 687766 45566666 999999999998876 7899999999987654321 45899999999999999999999
Q ss_pred cCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEE--CCEEccCC-CCceEEEcCC
Q psy16852 83 NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYR--GKEEILPD-NGHTMEFNPT 159 (579)
Q Consensus 83 ~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~--~~~~~~~~-~~~~~~~~~~ 159 (579)
|. +.....+.+.|.. +|.+...+....+.+|+.+.|.|.+.++|.+.+.|++ ++..+... ....+.....
T Consensus 77 n~-~~~~~~~~l~V~~------~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~ 149 (190)
T 2wv3_A 77 FV-SAPKANATIEVKA------APDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINK 149 (190)
T ss_dssp ET-TEEEEEEEEEEEC------CCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEEC
T ss_pred eC-CcccccEEEEEec------CCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecC
Confidence 98 8778888888874 4566666677788999999999999999999999999 67665421 2222333333
Q ss_pred CCeEEEEECcCC-CCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852 160 TGECVLSISEAT-PQDEAVYSVKAVNTFGRAECRANLVLR 198 (579)
Q Consensus 160 ~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~~~v~ 198 (579)
.+...|.|.++. .+|+|.|+|.|.|..|....+..+.|.
T Consensus 150 ~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 189 (190)
T 2wv3_A 150 ENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189 (190)
T ss_dssp SSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred CCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence 455689999999 799999999999999988877777664
No 106
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.93 E-value=2.2e-24 Score=186.55 Aligned_cols=181 Identities=20% Similarity=0.361 Sum_probs=146.5
Q ss_pred ccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE-CCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852 8 RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK-DGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGG 86 (579)
Q Consensus 8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g 86 (579)
.|...|.++.+.+|++++|.|.+.+.|. .+.|++ +|..+....++.....+....|.|.+++.+|+|.|+|.+.+..|
T Consensus 4 ~~~~~~~~~~v~~G~~v~L~C~~~~~p~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g 82 (189)
T 2v44_A 4 QVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKG 82 (189)
T ss_dssp EEEESCSEEEEETTCCEEEEEEEEECCS-EEEEECTTSCBCCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTS
T ss_pred EEEecCCceEEecCCcEEEEEEeecCCe-eEEEEeCCCCccCCCceEEEECCCCeEEEEEccCCcccCeEEEEEEEeCCC
Confidence 4677899999999999999999998877 999999 88888888888888777788999999999999999999999877
Q ss_pred ee-EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEE
Q psy16852 87 VA-TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 165 (579)
Q Consensus 87 ~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l 165 (579)
.. ...+.+.|.. +|.+...+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+.......+..... ..|
T Consensus 83 ~~~~~~~~l~v~~------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~---~~L 153 (189)
T 2v44_A 83 QTQEATVVLEIYQ------KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN---NNL 153 (189)
T ss_dssp CEEEEEEEEEEEC------CCEEESCCCSEEEETTSCEEECCEEECSSCCEEEEEEEC--CEECCCTTEEECTT---SCE
T ss_pred CcEEEEEEEEEec------CCceeecCCcEEEeCCCCEEEEEEECcCCCCcEEEEECCcEEeccCCCCEEEecC---CcE
Confidence 65 5566777764 3455555666788899999999999999999999999998876433333333322 369
Q ss_pred EECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852 166 SISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198 (579)
Q Consensus 166 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~ 198 (579)
.|.++..+|+|.|+|.|.|..+.......+.+.
T Consensus 154 ~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~~~v~ 186 (189)
T 2v44_A 154 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 186 (189)
T ss_dssp EETTCCGGGCEEEEEEEEETTTTEEEEEEEEEE
T ss_pred EEEEcCcccCeEEEEEEEccccCceeeeeEEEE
Confidence 999999999999999999998766655555543
No 107
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.93 E-value=2.7e-24 Score=187.00 Aligned_cols=186 Identities=31% Similarity=0.548 Sum_probs=149.9
Q ss_pred CCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 184 (579)
+|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+..............+...|.|.+++.+|+|.|+|.+.+
T Consensus 5 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n 84 (194)
T 2a38_A 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATN 84 (194)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEEc
Confidence 45666677788899999999999999999999999999988776542222222235668999999999999999999999
Q ss_pred CCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc---eEEeC
Q psy16852 185 TFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKD 261 (579)
Q Consensus 185 ~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~---~~~~~ 261 (579)
..+.......+.+.. ...+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.... .....
T Consensus 85 ~~~~~~~~~~l~v~~--------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~ 156 (194)
T 2a38_A 85 GSGQATSTAELLVKA--------ETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEG 156 (194)
T ss_dssp TTEEEEEEEEEEEEC--------CCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEET
T ss_pred CCceEeEEEEEEEcc--------CCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcC
Confidence 988777666666642 1235566666667789999999999999999999999999999987654 22334
Q ss_pred CeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEE
Q psy16852 262 NVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298 (579)
Q Consensus 262 ~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v 298 (579)
....|.|.++..+|+|.|+|.|.|..|....++.+.|
T Consensus 157 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 193 (194)
T 2a38_A 157 DLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193 (194)
T ss_dssp TEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred CEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence 5568999999999999999999999998887777665
No 108
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.93 E-value=1.1e-24 Score=189.93 Aligned_cols=180 Identities=18% Similarity=0.287 Sum_probs=136.0
Q ss_pred EEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECC-CCeEEEEEcccCC
Q psy16852 295 SVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDT-DGLCKLAISEVFP 373 (579)
Q Consensus 295 ~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~ 373 (579)
.+.+.+.++..+.+.|... .+.|.|.++|+++|.++..+.++.+..+. .+...|.|.++..
T Consensus 9 ~~~~~v~eg~~v~l~c~~~------------------~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~ 70 (207)
T 3rbs_A 9 ELAVEILEKGQVRFWMQAE------------------KLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQD 70 (207)
T ss_dssp EEEEEECGGGCEEEEEECS------------------CCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCG
T ss_pred CCceEEEeCCeEEEEEEEe------------------cCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCCh
Confidence 4456677888888777532 34688999999999999887776665544 4667899999999
Q ss_pred CCCEEEEEEEEcCceeEEEEEEEEEEeccc---------------CCCCCeeecCCCceeeecCCCeEEEEEEEee-CCC
Q psy16852 374 ENAGLYSCTAVNPVGEAVAAATLAVEEKEE---------------SGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP 437 (579)
Q Consensus 374 ~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~---------------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~ 437 (579)
+|+|.|+|.|.| |.......+.+..... ...+|.+..++ ...+.+|+.+.|.|.+.|. |.|
T Consensus 71 ~D~G~Y~C~a~N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p 147 (207)
T 3rbs_A 71 EDEGTYTFQLQD--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKET 147 (207)
T ss_dssp GGCEEEEEEEEE--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTC
T ss_pred hhCEEEEEEEEC--CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCC
Confidence 999999999999 4343334332211000 01267776655 4678899999999999998 999
Q ss_pred eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEE
Q psy16852 438 SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRA 517 (579)
Q Consensus 438 ~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a 517 (579)
+++|+|+|..+..+.++.. ......|.|.++..+|+|.|+|.|
T Consensus 148 ~i~W~k~g~~l~~~~~~~~-------------------------------------~~~~~~L~I~~v~~~D~G~Y~C~a 190 (207)
T 3rbs_A 148 HIVWYKDEREISVDEKHDF-------------------------------------KDGICTLLITEFSKKDAGIYEVIL 190 (207)
T ss_dssp EEEEEETTEEECCCCCCCC-------------------------------------SSEEEEEEETTCCGGGCEEEEEEE
T ss_pred EEEEEECCEECCCCCceEc-------------------------------------CCCEEEEEECCCCcccCEEEEEEE
Confidence 9999999999876543211 112345899999999999999999
Q ss_pred EeCCeeEEEEEEEEE
Q psy16852 518 ENVAGSVTCTATLSL 532 (579)
Q Consensus 518 ~n~~g~~~~~~~l~v 532 (579)
.|..|....++.|.+
T Consensus 191 ~N~~G~~~~~~~L~~ 205 (207)
T 3rbs_A 191 KDDRGKDKSRLKLVD 205 (207)
T ss_dssp EETTEEEEEEEEECC
T ss_pred EcCCCEEEEEEEEec
Confidence 999999999999875
No 109
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.93 E-value=4.5e-24 Score=185.00 Aligned_cols=183 Identities=16% Similarity=0.248 Sum_probs=146.7
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeC-CCeeEEEE-CCEEec-CCCCEEEEE-eCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHP-LPTMTWQK-DGTELH-ATEHYLITT-VESVSTLEIINPTKEDIGVYTCKA 81 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~-~~~v~W~~-~g~~~~-~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (579)
|+.|...|.++.+.+|+.++|.|.+.+.+ .+.+.|++ +|..+. ...++.... ......|.|.+++.+|+|.|+|.+
T Consensus 2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (191)
T 1epf_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81 (191)
T ss_dssp -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEE
Confidence 67888999999999999999999998876 77999999 888886 344554433 356789999999999999999999
Q ss_pred EcCC-eeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCC
Q psy16852 82 TNIG-GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160 (579)
Q Consensus 82 ~~~~-g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~ 160 (579)
.+.. +.....+.+.|.. +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.......+.....
T Consensus 82 ~~~~~~~~~~~~~l~v~~------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~- 154 (191)
T 1epf_A 82 TAEDGTQSEATVNVKIFQ------KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN- 154 (191)
T ss_dssp EETTTEEEEEEEEEEEEC------CSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTT-
T ss_pred EcCCCcceEEEEEEEeec------CceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecC-
Confidence 9987 5566667777753 4566666677788999999999999999999999999999887544444443322
Q ss_pred CeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEE
Q psy16852 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVL 197 (579)
Q Consensus 161 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v 197 (579)
..|.|.++..+|+|.|+|.|.|..+.......+.+
T Consensus 155 --~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v 189 (191)
T 1epf_A 155 --NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189 (191)
T ss_dssp --SCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred --CeEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence 26999999999999999999998865554444443
No 110
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.93 E-value=1e-23 Score=183.81 Aligned_cols=190 Identities=27% Similarity=0.415 Sum_probs=149.1
Q ss_pred CCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEE
Q psy16852 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAV 183 (579)
Q Consensus 104 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 183 (579)
.+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.............++...|.|.+++.+|+|.|+|.+.
T Consensus 3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (197)
T 2j8h_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT 82 (197)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEE
T ss_pred CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEE
Confidence 46778777888999999999999999999999999999999887654332222334566799999999999999999999
Q ss_pred cCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc---eEEe
Q psy16852 184 NTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETK 260 (579)
Q Consensus 184 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~---~~~~ 260 (579)
|..|.......+.+...... ..|.....+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.... ....
T Consensus 83 n~~g~~~~~~~l~V~~~p~~------~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~ 156 (197)
T 2j8h_A 83 NQGGSVSGTASLEVEVPAKI------HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT 156 (197)
T ss_dssp ETTEEEEEEEEEEEEEEEEE------CCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEEC
T ss_pred ECCCceeEEEEEEEcCCCcC------CCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEc
Confidence 99888777777766532211 11222222344567889999999999999999999999999887544 2233
Q ss_pred CCeEEEEEcc-cCCCCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 261 DNVTKLVIKQ-TTKKTTGKYEIRVVNEAGEARTSGSVTIT 299 (579)
Q Consensus 261 ~~~~~l~i~~-~~~~d~G~y~C~a~n~~g~~~~~~~~~v~ 299 (579)
.....|.|.+ +..+|+|.|+|.|.|..|....++.|.|.
T Consensus 157 ~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 196 (197)
T 2j8h_A 157 RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196 (197)
T ss_dssp SSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence 4667899999 99999999999999999998777776653
No 111
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.93 E-value=3.6e-24 Score=183.96 Aligned_cols=174 Identities=25% Similarity=0.437 Sum_probs=138.5
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCC--EEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES--VSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
+|.|...|.++.+.+|++++|.|.+.+.|.+.+.|+++|..+............. ...|.|.+++.+|+|.|+|.+.+
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 81 (182)
T 1rhf_A 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVED 81 (182)
T ss_dssp -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESS
T ss_pred CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEc
Confidence 6889999999999999999999999998888999999999988765555544443 47899999999999999999998
Q ss_pred CCee-eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCC-eEEEEECCEEccCCCCceEEEcCCCC
Q psy16852 84 IGGV-ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTG 161 (579)
Q Consensus 84 ~~g~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~ 161 (579)
..+. ....+.+.|.. +|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+..... .
T Consensus 82 ~~~~~~~~~~~l~V~~------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~---------~ 146 (182)
T 1rhf_A 82 GGETEISQPVWLTVEG------VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP---------S 146 (182)
T ss_dssp CTTCEECCCEEEEEEC------SCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE---------S
T ss_pred CCCcEEEEEEEEEEec------CCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC---------C
Confidence 7664 34567777764 4566666777889999999999999999998 9999999988754321 3
Q ss_pred eEEEEECcCCCCCCeEEEEEEEcCCceeEE-EEEEE
Q psy16852 162 ECVLSISEATPQDEAVYSVKAVNTFGRAEC-RANLV 196 (579)
Q Consensus 162 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~~~ 196 (579)
...|.|.++ +|+|.|+|.|.|..|.... ...+.
T Consensus 147 ~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~ 180 (182)
T 1rhf_A 147 PSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVH 180 (182)
T ss_dssp SEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEE
T ss_pred ceEEEEecc--ccCeEEEEEEECCCCCcccceEEEE
Confidence 467999988 5899999999999887643 44443
No 112
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.93 E-value=7.4e-25 Score=189.75 Aligned_cols=171 Identities=15% Similarity=0.063 Sum_probs=129.5
Q ss_pred ceeeeCCCCEEEEEE---EEeeCCCeeEEEECCEEec-----------------CCCCEEEEEeCCEEEEEEcCCCCCCC
Q psy16852 15 PVVSHQEQPALFTCK---VEGHPLPTMTWQKDGTELH-----------------ATEHYLITTVESVSTLEIINPTKEDI 74 (579)
Q Consensus 15 ~~~v~~G~~~~l~C~---~~~~~~~~v~W~~~g~~~~-----------------~~~~~~~~~~~~~~~L~i~~~~~~d~ 74 (579)
++.+..|+.++|+|. +.+.|.+.|+|+|+|..+. ....+......+...|.|.+++.+|+
T Consensus 2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 81 (203)
T 4fa8_A 2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 81 (203)
T ss_dssp CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence 578999999999996 4577888999999874221 12345555667788999999999999
Q ss_pred EEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCC--CCc
Q psy16852 75 GVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPD--NGH 152 (579)
Q Consensus 75 G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~--~~~ 152 (579)
|.|+|.|.|..|.....+.|.|.. ||.+...+....+.+|+.+.|.|.+.|.|.|.|+|+++++.+... ...
T Consensus 82 G~Y~C~a~n~~g~~~~~~~l~V~~------p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~ 155 (203)
T 4fa8_A 82 GNYLCRMKLGETEVTKQEHLSVVK------PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANG 155 (203)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEE------EEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------
T ss_pred eEEEEEEEcCCCcEEEEEEEEecC------CceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccc
Confidence 999999999999998888888864 334555555667789999999999999999999999887654321 222
Q ss_pred eEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEE
Q psy16852 153 TMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAEC 191 (579)
Q Consensus 153 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 191 (579)
++.....+....|.+.+++.+|+|.|+|.|.|..|.+..
T Consensus 156 r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~ 194 (203)
T 4fa8_A 156 GVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 194 (203)
T ss_dssp CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred eEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence 333333344456777899999999999999999997653
No 113
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.93 E-value=8.3e-24 Score=183.55 Aligned_cols=183 Identities=23% Similarity=0.405 Sum_probs=144.8
Q ss_pred CCccccccC--ceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 6 APRFIEKIQ--PVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 6 ~p~~~~~p~--~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
||.|...+. ++.+.+|+.++|.|.+.+.|.+.+.|+++|..+....++.. ......|.|.+++.+|+|.|+|.+.+
T Consensus 2 pP~i~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~ 79 (192)
T 2va4_A 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL--KGSNTELTVRNIINSDGGPYVCRATN 79 (192)
T ss_dssp CCEEECSCCEEEEETTSCCCEEEECEEECSSCCEEEEEETTEECCCSSSEEE--ETTTTEEEECSCCGGGCEEEEEEEEE
T ss_pred CCcccCCCCCcEEEEecCCCEEEEEeeccCCCCeEEEEECCeEcCCCccEEE--eCCeeEEEEecCChhcCcEEEEEEEc
Confidence 788777544 58899999999999999989899999999999987766644 33446899999999999999999999
Q ss_pred CCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEEC--CEEccCCC---CceEEEcC
Q psy16852 84 IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRG--KEEILPDN---GHTMEFNP 158 (579)
Q Consensus 84 ~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~--~~~~~~~~---~~~~~~~~ 158 (579)
..+.....+.+.|..++ .+... ....+.+|+.+.|.|.+.+.|.+.+.|+++ +..+.... ...+....
T Consensus 80 ~~~~~~~~~~l~V~~~p------~~~~~-~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~ 152 (192)
T 2va4_A 80 KAGEDEKQAFLQVFVQP------HIIQL-KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKG 152 (192)
T ss_dssp TTEEEEEEEEEEEEEEE------EEEEE-CCEEECTTSEEEEEEEEEEESCCEEEEEETTTTEEECTTCBCTTSCEEEEE
T ss_pred cccccceEEEEEEEccC------ccccc-CcceEEeCCeEEEEEEecCCCCCcEEEEeCCCCceeeccccccCCcEEEee
Confidence 99888888888886543 33222 334567899999999999999999999998 55544321 22233333
Q ss_pred CCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEE
Q psy16852 159 TTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVL 197 (579)
Q Consensus 159 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v 197 (579)
..+...|.|.++..+|+|.|+|.|.|..|....+..+.|
T Consensus 153 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 191 (192)
T 2va4_A 153 QHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191 (192)
T ss_dssp ETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred ccCceEEEEecCCcccCEEEEEEEEecCCceEEEEEEEe
Confidence 345678999999999999999999999998776666654
No 114
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.92 E-value=1.1e-23 Score=185.69 Aligned_cols=190 Identities=22% Similarity=0.367 Sum_probs=149.3
Q ss_pred CCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCC-CCceEEEcCCCCeEEEEECcCCC-CCCeEEEEE
Q psy16852 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPD-NGHTMEFNPTTGECVLSISEATP-QDEAVYSVK 181 (579)
Q Consensus 104 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~ 181 (579)
.+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... .+..+. ...++...|.|.++.. +|+|.|+|.
T Consensus 5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~~d~G~Y~C~ 83 (212)
T 2yd1_A 5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVL-EQPGGISILRIEPVRAGRDDAPYECV 83 (212)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEE-EETTTEEEEEESSCCTTTTCSEEEEE
T ss_pred CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEE-EcCCCeEEEEEEecCCCCcCceEEEE
Confidence 4778888888899999999999999999999999999999988733 333332 2234568999999999 999999999
Q ss_pred EEcCCce-eEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc--eE
Q psy16852 182 AVNTFGR-AECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD--IE 258 (579)
Q Consensus 182 ~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~--~~ 258 (579)
+.|..|. ......+.|..... .....|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.... ..
T Consensus 84 ~~n~~g~~~~~~~~l~V~~~~~----~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~ 159 (212)
T 2yd1_A 84 AENGVGDAVSADATLTIYEGDK----TPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYS 159 (212)
T ss_dssp EECSSSCEEEEEEEEEEECTTC----SCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEE
T ss_pred EEeCCCCeEEeeEEEEEecccC----CCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEE
Confidence 9999887 55566666653211 01123667666677778899999999999999999999999999987543 22
Q ss_pred EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEE-EEEEEEe
Q psy16852 259 TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTS-GSVTITV 300 (579)
Q Consensus 259 ~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~-~~~~v~~ 300 (579)
... ..|.|.++..+|+|.|+|.|.|..|..... +.|.|..
T Consensus 160 ~~~--~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~ 200 (212)
T 2yd1_A 160 LKD--GFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV 200 (212)
T ss_dssp EET--TEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred ccC--CeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEe
Confidence 222 379999999999999999999999987654 6666653
No 115
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.92 E-value=2.1e-24 Score=187.28 Aligned_cols=181 Identities=28% Similarity=0.429 Sum_probs=144.6
Q ss_pred CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecC-CCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA-TEHYLITTVESVSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
.||.|...|.++.+.+|++++|.|.+.+.|.+.+.|+++|..+.. ..++... .....|.|.+++.+|+|.|+|.+.+
T Consensus 6 ~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (192)
T 2iep_A 6 KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIR--ENGQLLTILSVEDSDDGIYCCTANN 83 (192)
T ss_dssp EEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEE--GGGTEEEESSCCGGGCEEEEEEEEC
T ss_pred CCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEc--CCccEEEEcCCCcccCeEEEEEEEc
Confidence 468899999999999999999999999999999999999998865 3444433 2335799999999999999999999
Q ss_pred CCee-eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCe
Q psy16852 84 IGGV-ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 162 (579)
Q Consensus 84 ~~g~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~ 162 (579)
..|. ......+.|... |.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....+.... . .
T Consensus 84 ~~~~~~~~~~~l~v~~~------p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~--~---~ 152 (192)
T 2iep_A 84 GVGGAVESCGALQVKMK------PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVL--E---S 152 (192)
T ss_dssp SSSCCEEEEEEEEEEEE------EEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEEC--T---T
T ss_pred CCCceeEeEEEEEEEeC------CccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEe--c---C
Confidence 8776 445566777643 34555566778889999999999999999999999999988765543332 1 1
Q ss_pred EEEEECcCCCCCCeEEEEEEEcCCceeEE-EEEEEEe
Q psy16852 163 CVLSISEATPQDEAVYSVKAVNTFGRAEC-RANLVLR 198 (579)
Q Consensus 163 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~~~v~ 198 (579)
..|.|.++..+|+|.|+|.+.|..|.... ...+.|.
T Consensus 153 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~ 189 (192)
T 2iep_A 153 GSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189 (192)
T ss_dssp SCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred CcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEE
Confidence 26999999999999999999999887633 3455443
No 116
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.92 E-value=4.5e-25 Score=210.16 Aligned_cols=266 Identities=14% Similarity=0.171 Sum_probs=167.7
Q ss_pred CCceEEccCCcEEEEEEEEeec--CCeEEEEEC--CEEcc-----------------CCCCceEEEcCCCCeEEEEECcC
Q psy16852 112 LKPVIAEAQSPATLKATVTGRP--TPSICWYRG--KEEIL-----------------PDNGHTMEFNPTTGECVLSISEA 170 (579)
Q Consensus 112 ~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~l~i~~~ 170 (579)
+..+.+.+|+.++|.|.+.+.+ .+.|.||++ +..+. ...+..+..+...+..+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (344)
T 1za6_B 7 SGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSL 86 (344)
T ss_dssp CCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred CCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCC
Confidence 3456788999999999998763 579999986 22210 12334444444456789999999
Q ss_pred CCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CC-CeEEEEEC
Q psy16852 171 TPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PT-PEVKWFKN 248 (579)
Q Consensus 171 ~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~ 248 (579)
+.+|+|.|+|.+.+..+.......+.|... ...+|.+........+.+|+.++|.|.+.|. |. +.+.|+++
T Consensus 87 ~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~-------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~ 159 (344)
T 1za6_B 87 RSEDTAVYFCTRSLNMAYWGQGTLVTVSSA-------STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSG 159 (344)
T ss_dssp CGGGCEEEEEEETTTTCEECCCEEEEECSS-------CCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTT
T ss_pred CcccCEEEEEEEecCcceecCcEEEEEecC-------CCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecC
Confidence 999999999999986543333345555321 1134444433323346789999999999986 65 69999999
Q ss_pred CEEeccC---ceE----EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEE----------------------
Q psy16852 249 GKEIVSK---DIE----TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT---------------------- 299 (579)
Q Consensus 249 ~~~i~~~---~~~----~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~---------------------- 299 (579)
+..+... ... .....+.|.|.++..+| |.|+|.|.|..+.......+.+.
T Consensus 160 g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 238 (344)
T 1za6_B 160 ALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGG 238 (344)
T ss_dssp TBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------
T ss_pred CccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCC
Confidence 8753210 000 01123478999888878 99999999988765433333211
Q ss_pred eccceeeeeeeeeeccccCceeeeecCeeEEEeeeCC--CeEEEEECCEEccCCCeEEEEECCCCe----EEEEEcccCC
Q psy16852 300 VAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPT--PLVTWSHDGTPMKEGKEVTIYQDTDGL----CKLAISEVFP 373 (579)
Q Consensus 300 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~--~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~l~i~~~~~ 373 (579)
....+.+.+... ....+......+.|.+.|.++ +.++|+++|..+............+++ +.|.|.....
T Consensus 239 ~~~~P~v~~~~~----~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~ 314 (344)
T 1za6_B 239 QPREPQVYTLPP----SRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRW 314 (344)
T ss_dssp CCBCCEEEEECC----CGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHH
T ss_pred CCcCCEEEEeCC----ChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHc
Confidence 111222222111 111111222455799999643 589999999987654332233334443 3566777666
Q ss_pred CCCEEEEEEEEcCcee
Q psy16852 374 ENAGLYSCTAVNPVGE 389 (579)
Q Consensus 374 ~d~G~Y~C~a~n~~g~ 389 (579)
+|.|.|+|.|.|....
T Consensus 315 ~~~g~YtC~a~~~~l~ 330 (344)
T 1za6_B 315 QQGNVFSCSVMHEALH 330 (344)
T ss_dssp HTTCEEEEEEECTTST
T ss_pred cCCCeEEEEEEcCCCC
Confidence 7899999999997653
No 117
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.92 E-value=1.2e-23 Score=185.71 Aligned_cols=191 Identities=19% Similarity=0.251 Sum_probs=146.4
Q ss_pred EEeccceeeeeeeeeeccccCceeeeecCeeEEEeee-CCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCC
Q psy16852 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGK-PTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENA 376 (579)
Q Consensus 298 v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 376 (579)
+.+..|..+.+.|..+. ..+.|.+.+. |.+.+.|+++|..+....++.+...+ +...|.|.++..+|+
T Consensus 3 v~~~~g~~v~l~c~~~~----------~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~-~~~~L~i~~v~~~D~ 71 (212)
T 2r15_A 3 SIALSATDLKIQSTAEG----------IQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTG-EQIWLQINEPTPNDK 71 (212)
T ss_dssp ---CCBCCCEEEECSSE----------EEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEET-TEEEEEEESCCGGGC
T ss_pred ccceecCcEEEEEcCce----------EEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeC-CEEEEEECCCCcccC
Confidence 34566777888885332 1234777775 58899999999999887777655443 456899999999999
Q ss_pred EEEEEEEEcCceeEEEEEEEEEEe---------------cccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEE
Q psy16852 377 GLYSCTAVNPVGEAVAAATLAVEE---------------KEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICW 441 (579)
Q Consensus 377 G~Y~C~a~n~~g~~~~~~~l~v~~---------------~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W 441 (579)
|.|+|.|.|..|....++.|.|.. ......++.+...+....+.+|+.++|.|.+.|.|.|.+.|
T Consensus 72 G~Y~C~~~n~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W 151 (212)
T 2r15_A 72 GKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSW 151 (212)
T ss_dssp EEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEE
T ss_pred EEEEEEEecCCcceEEEEEEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEE
Confidence 999999999988877777665542 01111244444455667899999999999999999999999
Q ss_pred eeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCC
Q psy16852 442 YRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVA 521 (579)
Q Consensus 442 ~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 521 (579)
++++..+..+.++.+.. .++..+.|.|.++..+|+|.|+|.|.|..
T Consensus 152 ~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~ 197 (212)
T 2r15_A 152 LKNEKALAQTDHCNLKF----------------------------------EAGRTAYFTINGVSTADSGKYGLVVKNKY 197 (212)
T ss_dssp EETTEEECCCSSEEEEE----------------------------------ETTTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred EECCeECccCCCEEEEE----------------------------------cCCCEEEEEEcCcchHHCeEEEEEEEcCC
Confidence 99999997766655432 11344669999999999999999999999
Q ss_pred eeEEEEEEEEEe
Q psy16852 522 GSVTCTATLSLL 533 (579)
Q Consensus 522 g~~~~~~~l~v~ 533 (579)
|....++.|.|.
T Consensus 198 g~~~~~~~l~V~ 209 (212)
T 2r15_A 198 GSETSDFTVSVF 209 (212)
T ss_dssp EEEEEEEEEEEE
T ss_pred CcEEEEEEEEEE
Confidence 999999999875
No 118
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.92 E-value=4.5e-24 Score=184.73 Aligned_cols=182 Identities=23% Similarity=0.372 Sum_probs=136.7
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG 85 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 85 (579)
+|.|...|.+..+.+|+.++|.|.+.+.|.+.+.|++++..+......+.... ....|.|.+++.+|+|.|+|.+.+..
T Consensus 2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~~~~ 80 (189)
T 2v5t_A 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAML-ANNNLQILNINKSDEGIYRCEGRVEA 80 (189)
T ss_dssp CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEEC-TTSCEEETTCCGGGCEEEEEEEEETT
T ss_pred CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEe-cCCCEEEeeCCHhHCcEEEEEEEEcC
Confidence 68899999999999999999999999888889999999988764322222222 23469999999999999999999876
Q ss_pred eeeE--EEEEEEEEecccCCCCCceecCCC--ceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCC
Q psy16852 86 GVAT--CSANLIVLEKEESGEAPKFTKPLK--PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161 (579)
Q Consensus 86 g~~~--~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~ 161 (579)
+... ....+.+..++ .+..... ...+.+|+.+.|.|.+.+.|.+.+.|++++..+......... . .
T Consensus 81 ~~~~~~~~~~l~v~~~p------~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~--~--~ 150 (189)
T 2v5t_A 81 RGEIDFRDIIVIVNVPP------AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK--G--S 150 (189)
T ss_dssp TTEEEEEEEEEEEEEEE------EEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEE--T--T
T ss_pred CCceEEEEEEEEecCCC------CcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEe--c--C
Confidence 4332 34555555432 3332222 356778999999999999999999999999988766544332 1 2
Q ss_pred eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198 (579)
Q Consensus 162 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~ 198 (579)
...|.|.++..+|+|.|+|.|.|..|....+..+.|.
T Consensus 151 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 187 (189)
T 2v5t_A 151 NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187 (189)
T ss_dssp TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence 3479999999999999999999999988877777664
No 119
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.92 E-value=9.2e-25 Score=189.14 Aligned_cols=175 Identities=18% Similarity=0.146 Sum_probs=124.8
Q ss_pred EEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccC-----------------CCeEEEEECC
Q psy16852 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKE-----------------GKEVTIYQDT 360 (579)
Q Consensus 298 v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~-----------------~~~~~~~~~~ 360 (579)
|++..|+.+.|.|.... +.+.|.+.|+|+|+|..+.. ...+.. ...
T Consensus 3 Vta~~Ge~v~L~C~~~~----------------v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 65 (203)
T 4fa8_A 3 VTAFLGERVTLTSYWRR----------------VSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI-HRS 65 (203)
T ss_dssp CEEETTCCEEEEEECSS----------------TTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEE-EEE
T ss_pred eEEEcCCCEEEEeeeec----------------cCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEE-EEc
Confidence 45667888888885321 24567777888776543211 111222 123
Q ss_pred CCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEE
Q psy16852 361 DGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSIC 440 (579)
Q Consensus 361 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~ 440 (579)
.+...|.|.++..+|+|.|+|.|.|..|.....+.|.|.. ||.+...+....+.+|+.++|.|.+.|.|.|+|.
T Consensus 66 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~------p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~ 139 (203)
T 4fa8_A 66 ANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVK------PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQ 139 (203)
T ss_dssp TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE------EEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEE
T ss_pred CCEEEEEEccCCHHHCeEEEEEEEcCCCcEEEEEEEEecC------CceeeecceeEEEcCCCEEEEEEEcCCCCCCEEE
Confidence 4567899999999999999999999999999999999975 6777777777889999999999999999999999
Q ss_pred EeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeC
Q psy16852 441 WYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENV 520 (579)
Q Consensus 441 W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 520 (579)
|++++..+...... +.+..+..++....|.|.++..+|+|.|+|.|.|.
T Consensus 140 W~~~~~~~~~~~~~-------------------------------~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~ 188 (203)
T 4fa8_A 140 WLMPEGVEPAPTAA-------------------------------NGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKND 188 (203)
T ss_dssp ECCC-------------------------------------------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESS
T ss_pred EEECCeeecCcccc-------------------------------cceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcC
Confidence 99877654321100 00112223455566888899999999999999999
Q ss_pred CeeEEE
Q psy16852 521 AGSVTC 526 (579)
Q Consensus 521 ~g~~~~ 526 (579)
.|++..
T Consensus 189 ~G~a~~ 194 (203)
T 4fa8_A 189 KEEAHG 194 (203)
T ss_dssp SCEEEE
T ss_pred CCEEEE
Confidence 999875
No 120
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.92 E-value=9.9e-24 Score=186.26 Aligned_cols=180 Identities=14% Similarity=0.219 Sum_probs=143.1
Q ss_pred eeCCCCEEEEEEEEee-CCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852 18 SHQEQPALFTCKVEGH-PLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96 (579)
Q Consensus 18 v~~G~~~~l~C~~~~~-~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v 96 (579)
..+|+.+.|.|.+.+. |.+.+.|+++|..+....++.....+....|.|.+++.+|+|.|+|.+.|..|.....+.+.|
T Consensus 14 ~c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v 93 (212)
T 2r15_A 14 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG 93 (212)
T ss_dssp EECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECH
T ss_pred EEcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEE
Confidence 3467777777777664 577999999999999888888888888889999999999999999999998887776666654
Q ss_pred Eec---------------ccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCC
Q psy16852 97 LEK---------------EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161 (579)
Q Consensus 97 ~~~---------------~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~ 161 (579)
... .....++.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....+..+.... .+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~-~~ 172 (212)
T 2r15_A 94 QAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEA-GR 172 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEET-TT
T ss_pred eeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcC-CC
Confidence 320 00012223333456678899999999999999999999999999998877665555432 44
Q ss_pred eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198 (579)
Q Consensus 162 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~ 198 (579)
...|.|.++..+|+|.|+|.|.|..|.......+.|.
T Consensus 173 ~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 209 (212)
T 2r15_A 173 TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209 (212)
T ss_dssp EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEE
Confidence 5799999999999999999999999988777766654
No 121
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.92 E-value=5e-24 Score=188.21 Aligned_cols=186 Identities=25% Similarity=0.407 Sum_probs=142.0
Q ss_pred cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCC----EEEEEeCCE---EEEEEcCCCCCCCE
Q psy16852 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEH----YLITTVESV---STLEIINPTKEDIG 75 (579)
Q Consensus 3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~----~~~~~~~~~---~~L~i~~~~~~d~G 75 (579)
+..||.|...|.++.+.+|+.++|.|.+.+.|.+.+.|+++|..+..... .......+. ..|.|.+++.+|+|
T Consensus 6 ~~~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 85 (212)
T 2v9r_A 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEG 85 (212)
T ss_dssp CCEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCE
T ss_pred ccCCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCe
Confidence 45689999999999999999999999999999999999999998864321 111111111 12445677999999
Q ss_pred EEEEEEEcCCeee-EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEEccCCCCce
Q psy16852 76 VYTCKATNIGGVA-TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDNGHT 153 (579)
Q Consensus 76 ~Y~C~~~~~~g~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~ 153 (579)
.|+|.+.|..|.. .....+.|... ++.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.......
T Consensus 86 ~Y~C~~~n~~g~~~~~~~~l~V~~~-----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~ 160 (212)
T 2v9r_A 86 VYVCVARNYLGEAVSHDASLEVAIL-----RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERI 160 (212)
T ss_dssp EEEEEEEETTEEEECCCEEEEECEE-----CSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTE
T ss_pred EEEEEEECCCCceeecceEEEEEec-----cccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceE
Confidence 9999999988765 34566777543 2344445566788899999999998 889999999999999887654333
Q ss_pred EEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEE-EEEEEe
Q psy16852 154 MEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECR-ANLVLR 198 (579)
Q Consensus 154 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~-~~~~v~ 198 (579)
.... ..|.|.++..+|+|.|+|.+.|..|..... ..+.|.
T Consensus 161 ~~~~-----~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~ 201 (212)
T 2v9r_A 161 TIRG-----GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVL 201 (212)
T ss_dssp EEET-----TEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred EccC-----CeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEE
Confidence 2221 379999999999999999999998876543 555554
No 122
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.91 E-value=1.9e-22 Score=177.74 Aligned_cols=191 Identities=26% Similarity=0.426 Sum_probs=146.0
Q ss_pred CCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcC-CCCCCeEEEEEE
Q psy16852 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEA-TPQDEAVYSVKA 182 (579)
Q Consensus 104 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~Y~C~~ 182 (579)
.+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.......... .......|.|.++ ..+|+|.|+|.+
T Consensus 5 ~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~-~~~~~~~L~i~~v~~~~d~G~Y~C~a 83 (212)
T 2yd6_A 5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEF-DDGSGSVLRIQPLRTPRDEAIYECVA 83 (212)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEE-GGGTEEEEEECSCCTTTTCEEEEEEE
T ss_pred CCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEE-cCCCceEEEEeccCCCCCCeEEEEEE
Confidence 35667777788889999999999999999999999999999887543333222 2234578999999 499999999999
Q ss_pred EcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc------
Q psy16852 183 VNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD------ 256 (579)
Q Consensus 183 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~------ 256 (579)
.|..|.......+.+...... ....|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....
T Consensus 84 ~n~~g~~~~~~~l~V~~~~~~----~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~ 159 (212)
T 2yd6_A 84 SNNVGEISVSTRLTVLREDQI----PRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIK 159 (212)
T ss_dssp EETTEEEEEEEEEEEECGGGC----CTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEE
T ss_pred EcCCCcEEEEEEEEEeccCcc----CCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEE
Confidence 999988777777776532210 0123566666666778899999999999999999999999999887542
Q ss_pred eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEE-EEEEEEE
Q psy16852 257 IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART-SGSVTIT 299 (579)
Q Consensus 257 ~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~-~~~~~v~ 299 (579)
.........|.|.++..+|+|.|+|.|.|..|.... .+.+.|.
T Consensus 160 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~ 203 (212)
T 2yd6_A 160 QLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR 203 (212)
T ss_dssp EEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred EEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEE
Confidence 122245689999999999999999999999998654 3444444
No 123
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.91 E-value=1.3e-23 Score=188.38 Aligned_cols=193 Identities=22% Similarity=0.302 Sum_probs=148.9
Q ss_pred CCCCcccccc----CceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEE-EEEeCCEEEEEEcCCCCCCCEEEE
Q psy16852 4 VLAPRFIEKI----QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYL-ITTVESVSTLEIINPTKEDIGVYT 78 (579)
Q Consensus 4 ~~~p~~~~~p----~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~ 78 (579)
..+|.|...+ ....+.+|++++|.|.+.+.|.+.+.|+++|..+.....+. .........|.|.+++.+|+|.|+
T Consensus 13 ~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 92 (231)
T 3ojm_B 13 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 92 (231)
T ss_dssp CEEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEE
T ss_pred ccCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEE
Confidence 3477887776 78999999999999999999999999999999986543321 122333468999999999999999
Q ss_pred EEEEcCCeeeEEEEEEEEEecccCCCCCceec-CCCceEEccCCcEEEEEEEEeecCCeEEEEE----CCEEccCCCCce
Q psy16852 79 CKATNIGGVATCSANLIVLEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGRPTPSICWYR----GKEEILPDNGHT 153 (579)
Q Consensus 79 C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~----~~~~~~~~~~~~ 153 (579)
|.+.|..|.......+.|...+. .++.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+..+....
T Consensus 93 C~~~n~~~~~~~~~~l~V~~~~~--~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~ 170 (231)
T 3ojm_B 93 CVVENEYGSINHTYHLDVVERSR--HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPY 170 (231)
T ss_dssp EEEEETTEEEEEEEEEEEECCCC--CCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBC
T ss_pred EEEecccCcccccEEEEEEcCCC--CCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcce
Confidence 99999999888888888876432 2233332 3466788899999999999999999999999 776665443322
Q ss_pred EEEc-----CCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852 154 MEFN-----PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198 (579)
Q Consensus 154 ~~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~ 198 (579)
.... .......|.|.++..+|+|.|+|.+.|..|.......+.|.
T Consensus 171 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 220 (231)
T 3ojm_B 171 LKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVL 220 (231)
T ss_dssp EEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEe
Confidence 2111 11223579999999999999999999999988777777765
No 124
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.91 E-value=5.6e-24 Score=188.56 Aligned_cols=187 Identities=26% Similarity=0.372 Sum_probs=142.5
Q ss_pred cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCC--CEEEEEeCCE--EEEEEcCCCCCCCEEEE
Q psy16852 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE--HYLITTVESV--STLEIINPTKEDIGVYT 78 (579)
Q Consensus 3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~--~~~~~~~~~~--~~L~i~~~~~~d~G~Y~ 78 (579)
...||.|...|.++.+.+|++++|.|.+.+.|.+.+.|+++|..+.... ..+.....+. ..|.|.+++.+|+|.|+
T Consensus 6 ~~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~ 85 (217)
T 2vr9_A 6 QYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYW 85 (217)
T ss_dssp CCCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEE
T ss_pred ccCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEE
Confidence 4678999999999999999999999999998889999999999886542 2222222222 22368899999999999
Q ss_pred EEEEcCCeeeE-EEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEEccCCCCc----
Q psy16852 79 CKATNIGGVAT-CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDNGH---- 152 (579)
Q Consensus 79 C~~~~~~g~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~---- 152 (579)
|.+.|..|... ....+.|... ++.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+......
T Consensus 86 C~~~n~~g~~~~~~~~l~v~~~-----~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~ 160 (217)
T 2vr9_A 86 CVAKNRVGQAVSRHASLQIAVL-----RDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGA 160 (217)
T ss_dssp EEEEETTEEEECCCEEEEECEE-----CCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---C
T ss_pred EEEecCCCccccccceEEEEEe-----CCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCccccccccc
Confidence 99999888653 3556666543 3344455567788999999999998 89999999999999988743211
Q ss_pred --eEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEE
Q psy16852 153 --TMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVL 197 (579)
Q Consensus 153 --~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v 197 (579)
..... ....|.|.++..+|+|.|+|.|.|..|....+..+.+
T Consensus 161 ~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv 204 (217)
T 2vr9_A 161 SSRVRIV---DGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLI 204 (217)
T ss_dssp CCSEEEE---TTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEE
T ss_pred CCcEEec---CCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEE
Confidence 11111 1237999999999999999999999998766544433
No 125
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.91 E-value=1.9e-23 Score=188.49 Aligned_cols=192 Identities=22% Similarity=0.318 Sum_probs=147.2
Q ss_pred CCCccccc----cCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCE-EEEEeCCEEEEEEcCCCCCCCEEEEE
Q psy16852 5 LAPRFIEK----IQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHY-LITTVESVSTLEIINPTKEDIGVYTC 79 (579)
Q Consensus 5 ~~p~~~~~----p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C 79 (579)
.+|.|..+ +..+.+.+|++++|.|.+.+.|.+.+.|+++|..+...... ..........|.|.+++.+|+|.|+|
T Consensus 10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 89 (241)
T 3grw_A 10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC 89 (241)
T ss_dssp -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEE
Confidence 36777655 34689999999999999999988999999999988654322 11233344689999999999999999
Q ss_pred EEEcCCeeeEEEEEEEEEecccCCCCCc-eecCCCceEEccCCcEEEEEEEEeecCCeEEEEE----CCEEccCCCCceE
Q psy16852 80 KATNIGGVATCSANLIVLEKEESGEAPK-FTKPLKPVIAEAQSPATLKATVTGRPTPSICWYR----GKEEILPDNGHTM 154 (579)
Q Consensus 80 ~~~~~~g~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~----~~~~~~~~~~~~~ 154 (579)
.+.+..+.......+.|...+. .++. ....+....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+........
T Consensus 90 ~~~~~~~~~~~~~~l~V~~~~~--~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~ 167 (241)
T 3grw_A 90 VVENKFGSIRQTYTLDVLERSP--HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYV 167 (241)
T ss_dssp EEEETTEEEEEEEEEEEECCCC--CCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCE
T ss_pred EEeecCCceEEEEEEEEeccCC--CCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceee
Confidence 9999999888888888876432 1223 2334566778899999999999999999999999 7776655443322
Q ss_pred EE------cCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852 155 EF------NPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198 (579)
Q Consensus 155 ~~------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~ 198 (579)
.. ........|.|.++..+|+|.|+|.+.|..|.......+.|.
T Consensus 168 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 217 (241)
T 3grw_A 168 TVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVH 217 (241)
T ss_dssp EEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC-
T ss_pred eeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEec
Confidence 11 112235689999999999999999999999988777777665
No 126
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.91 E-value=3.5e-22 Score=172.74 Aligned_cols=175 Identities=21% Similarity=0.299 Sum_probs=140.1
Q ss_pred CCceecCCCceEEcc-CCcEEEEEEEEeecC--CeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEE
Q psy16852 105 APKFTKPLKPVIAEA-QSPATLKATVTGRPT--PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~-g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 181 (579)
+|.+.. +....+.+ |+.+.|.|.+.+.|. +.+.|++++..+....... ....|.|.+++.+|+|.|+|.
T Consensus 3 ~P~i~~-~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~ 74 (190)
T 2wv3_A 3 EPRIVT-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-------SNMEYRINKPRAEDSGEYHCV 74 (190)
T ss_dssp CCEEEE-CCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-------SEEEEEESSCCGGGCEEEEEE
T ss_pred CCcccc-cceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-------ccEEEEEecCCcccCEEEEEE
Confidence 445554 34455556 999999999998887 8999999999886543322 357899999999999999999
Q ss_pred EEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEE--CCEEeccC----
Q psy16852 182 AVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFK--NGKEIVSK---- 255 (579)
Q Consensus 182 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~--~~~~i~~~---- 255 (579)
+.+. +.......+.+. .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++ ++..+...
T Consensus 75 ~~n~-~~~~~~~~l~V~-----------~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~ 142 (190)
T 2wv3_A 75 YHFV-SAPKANATIEVK-----------AAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSG 142 (190)
T ss_dssp EEET-TEEEEEEEEEEE-----------CCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTS
T ss_pred EEeC-CcccccEEEEEe-----------cCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCC
Confidence 9998 776666666665 56777767777778999999999999999999999999 88877422
Q ss_pred c--eEEeCCeEEEEEcccC-CCCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 256 D--IETKDNVTKLVIKQTT-KKTTGKYEIRVVNEAGEARTSGSVTIT 299 (579)
Q Consensus 256 ~--~~~~~~~~~l~i~~~~-~~d~G~y~C~a~n~~g~~~~~~~~~v~ 299 (579)
. .........|.|.++. .+|+|.|+|.|.|..|....+..+.|.
T Consensus 143 ~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 189 (190)
T 2wv3_A 143 RFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189 (190)
T ss_dssp CEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred eEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence 1 2223445689999999 799999999999999998888887775
No 127
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.91 E-value=1.4e-22 Score=176.07 Aligned_cols=179 Identities=13% Similarity=0.228 Sum_probs=141.9
Q ss_pred CCceecCCCceEEccCCcEEEEEEEE-eecCCeEEEEECCEEccCCCCceEEEcCCCC-------eEEEEECcCCCCCCe
Q psy16852 105 APKFTKPLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTG-------ECVLSISEATPQDEA 176 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-------~~~l~i~~~~~~d~G 176 (579)
+|.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+............... ...|.|.+++.+|+|
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 81 (195)
T 2c5d_C 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG 81 (195)
T ss_dssp CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence 45777788889999999999999998 8899999999999988766332222222221 478999999999999
Q ss_pred EEEEEEEcCCceeEEE-EEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCC-eEEEEECCEEecc
Q psy16852 177 VYSVKAVNTFGRAECR-ANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP-EVKWFKNGKEIVS 254 (579)
Q Consensus 177 ~Y~C~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~i~~ 254 (579)
.|+|.+.+..+..... ..+.+. .+|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+..
T Consensus 82 ~Y~C~~~~~~~~~~~~~~~l~V~-----------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~ 150 (195)
T 2c5d_C 82 QYQCLVFLGHQTFVSQPGYVGLE-----------GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLAT 150 (195)
T ss_dssp EEEEEEEETTEEEECCCEEEEEC-----------CSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSS
T ss_pred EEEEEEEeCCCceecccEEEEEe-----------cCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccC
Confidence 9999999987654332 445443 56777777777789999999999999999999 9999999988865
Q ss_pred CceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeE-EEEEEEE
Q psy16852 255 KDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEAR-TSGSVTI 298 (579)
Q Consensus 255 ~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~-~~~~~~v 298 (579)
.... .....|.|.+++ |+|.|+|.|.|..|... ..+.|.|
T Consensus 151 ~~~~--~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 151 APGH--GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp STTS--SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred CCCc--CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence 4321 456789999987 78999999999999775 5666655
No 128
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.91 E-value=2.7e-22 Score=174.76 Aligned_cols=182 Identities=29% Similarity=0.497 Sum_probs=145.9
Q ss_pred CCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 184 (579)
+|.+...+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+....+..+..+ .....|.|.+++.+|+|.|+|.+.+
T Consensus 7 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~n 84 (197)
T 3lcy_A 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSD--GRTHTLTVMTEEQEDEGVYTCIATN 84 (197)
T ss_dssp EEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEES--SSEEEEEEECCSGGGCEEEEEEEEC
T ss_pred CCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeC--CCEEEEEEecCCccCCEEEEEEEEC
Confidence 45666777788899999999999999999999999999999877666555443 4557899999999999999999999
Q ss_pred CCceeEEEEEEEEeeccccCCCCccCCCeEec---cCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc---eE
Q psy16852 185 TFGRAECRANLVLRKATTIDKPRVLEAPTIVR---PLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IE 258 (579)
Q Consensus 185 ~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~---~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~---~~ 258 (579)
..+.......+.+... |.+.. ......+..|+.+.|.|.+.+.|.+.+.|++++..+.... ..
T Consensus 85 ~~~~~~~~~~l~v~~~-----------p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~ 153 (197)
T 3lcy_A 85 EVGEVETSSKLLLQAT-----------PQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIE 153 (197)
T ss_dssp SSCEEEEEEEEEEEEE-----------EEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEE
T ss_pred CCCceeEEEEEEEEcC-----------CCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEE
Confidence 9888777777666532 22211 1234457789999999999999999999999999987654 22
Q ss_pred EeCCeEEEEEcccCC-CCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 259 TKDNVTKLVIKQTTK-KTTGKYEIRVVNEAGEARTSGSVTIT 299 (579)
Q Consensus 259 ~~~~~~~l~i~~~~~-~d~G~y~C~a~n~~g~~~~~~~~~v~ 299 (579)
.......|.|.++.. +|+|.|+|.|.|..|....++.+.|.
T Consensus 154 ~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 195 (197)
T 3lcy_A 154 NTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195 (197)
T ss_dssp ECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred EcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEe
Confidence 334457899999985 89999999999999988777777664
No 129
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.91 E-value=5.2e-23 Score=182.08 Aligned_cols=174 Identities=16% Similarity=0.243 Sum_probs=140.3
Q ss_pred CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI 84 (579)
Q Consensus 5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 84 (579)
-.++|...|.++.+.+|+.++|.|.+.+.|.+.+.|++++..+.... ...|.|.+++.+|+|.|+|.+.+.
T Consensus 17 ~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~~~n~ 87 (218)
T 3k0w_A 17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN---------TSELIFNAVHVKDAGFYVCRVNNN 87 (218)
T ss_dssp --CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCC---------SSEEEETTCCGGGCEEEEEEEECT
T ss_pred CCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCC---------CCEEEEccCChhhCeEeEEEEEcC
Confidence 46789999999999999999999999988888999999999886543 257999999999999999999998
Q ss_pred Ceee-EEEEEEEEEecccC---------CCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceE
Q psy16852 85 GGVA-TCSANLIVLEKEES---------GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTM 154 (579)
Q Consensus 85 ~g~~-~~~~~~~v~~~~~~---------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~ 154 (579)
.|.. ...+.+.|...+.. ..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....
T Consensus 88 ~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~~--- 164 (218)
T 3k0w_A 88 FTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK--- 164 (218)
T ss_dssp TCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCCS---
T ss_pred CCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCCC---
Confidence 7754 44577777654311 1224566667778899999999999999999999999999998765432
Q ss_pred EEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCcee-EEEEEEEEe
Q psy16852 155 EFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRA-ECRANLVLR 198 (579)
Q Consensus 155 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~~v~ 198 (579)
..|.|.+++.+|+|.|+|.+.|..|.. .....+.|.
T Consensus 165 --------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~ 201 (218)
T 3k0w_A 165 --------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID 201 (218)
T ss_dssp --------SEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEEC
T ss_pred --------CEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEe
Confidence 369999999999999999999988763 334444443
No 130
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.91 E-value=1.5e-22 Score=175.11 Aligned_cols=184 Identities=21% Similarity=0.360 Sum_probs=137.3
Q ss_pred CCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 184 (579)
+|.+...+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+.......+..... ..|.|.+++.+|+|.|+|.+.+
T Consensus 2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~ 78 (189)
T 2v5t_A 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN---NNLQILNINKSDEGIYRCEGRV 78 (189)
T ss_dssp CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTT---SCEEETTCCGGGCEEEEEEEEE
T ss_pred CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecC---CCEEEeeCCHhHCcEEEEEEEE
Confidence 4566667778889999999999999988999999999998876544444443322 3599999999999999999998
Q ss_pred CCceeEEEEEEEEeeccccCCCCccCCCeEeccCC--ceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc-eEEeC
Q psy16852 185 TFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ--ALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-IETKD 261 (579)
Q Consensus 185 ~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~-~~~~~ 261 (579)
..+.......+.+.. ..+|.+..... ...+.+|+.+.|.|.+.+.|.+.+.|+++|..+.... .....
T Consensus 79 ~~~~~~~~~~~~l~v---------~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~ 149 (189)
T 2v5t_A 79 EARGEIDFRDIIVIV---------NVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKG 149 (189)
T ss_dssp TTTTEEEEEEEEEEE---------EEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEET
T ss_pred cCCCceEEEEEEEEe---------cCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEec
Confidence 875443333333321 12344433332 3457789999999999999999999999999987654 33444
Q ss_pred CeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEe
Q psy16852 262 NVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300 (579)
Q Consensus 262 ~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~ 300 (579)
....|.|.++..+|+|.|+|.|.|..|....+..+.|.+
T Consensus 150 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~v 188 (189)
T 2v5t_A 150 SNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 188 (189)
T ss_dssp TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CCCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEEe
Confidence 556899999999999999999999999988888877753
No 131
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.90 E-value=1.5e-22 Score=175.31 Aligned_cols=182 Identities=13% Similarity=0.183 Sum_probs=138.9
Q ss_pred CceecCCCceEEccCCcEEEEEEEEeec-CCeEEEEE-CCEEccCCC-CceEEEcCCCCeEEEEECcCCCCCCeEEEEEE
Q psy16852 106 PKFTKPLKPVIAEAQSPATLKATVTGRP-TPSICWYR-GKEEILPDN-GHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182 (579)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~-~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~ 182 (579)
+.+...+....+.+|+.+.|.|.+.+.+ .+.+.|++ ++..+.... +..+. ....+...|.|.+++.+|+|.|+|.+
T Consensus 3 ~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (191)
T 1epf_A 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVV-WNDDDSSTLTIYNANIDDAGIYKCVV 81 (191)
T ss_dssp CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEE-EEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred eEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEE-ECCCCceEEEEccCCcccCEEEEEEE
Confidence 3455566778889999999999998876 78999999 777766433 32222 22245678999999999999999999
Q ss_pred EcCCc-eeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc--eEE
Q psy16852 183 VNTFG-RAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD--IET 259 (579)
Q Consensus 183 ~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~--~~~ 259 (579)
.+..+ .......+.+. .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.... ...
T Consensus 82 ~~~~~~~~~~~~~l~v~-----------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~ 150 (191)
T 1epf_A 82 TAEDGTQSEATVNVKIF-----------QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI 150 (191)
T ss_dssp EETTTEEEEEEEEEEEE-----------CCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEE
T ss_pred EcCCCcceEEEEEEEee-----------cCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEE
Confidence 99874 33344444443 56777777777788999999999999999999999999999886432 112
Q ss_pred eCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 260 KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299 (579)
Q Consensus 260 ~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~ 299 (579)
......|.|.++..+|+|.|+|.|.|..+.......+.|.
T Consensus 151 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v~ 190 (191)
T 1epf_A 151 VLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190 (191)
T ss_dssp ECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEE
T ss_pred EecCCeEEECCCChhhCEEEEEEEEEecceeEEEEEEEEe
Confidence 2223479999999999999999999988766555555553
No 132
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.90 E-value=1.7e-22 Score=173.55 Aligned_cols=176 Identities=16% Similarity=0.250 Sum_probs=138.8
Q ss_pred CceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcC
Q psy16852 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNT 185 (579)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 185 (579)
|.+...+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+.......+..........|.|.+++.+|+|.|+|.+.+.
T Consensus 3 ~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 82 (182)
T 1rhf_A 3 LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDG 82 (182)
T ss_dssp ----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSC
T ss_pred CEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcC
Confidence 35556667788999999999999999899999999999988776555555444333578999999999999999999998
Q ss_pred Ccee-EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCC-eEEEEECCEEeccCceEEeCCe
Q psy16852 186 FGRA-ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP-EVKWFKNGKEIVSKDIETKDNV 263 (579)
Q Consensus 186 ~~~~-~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~i~~~~~~~~~~~ 263 (579)
.+.. .....+.+. .+|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+.... ...
T Consensus 83 ~~~~~~~~~~l~V~-----------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~----~~~ 147 (182)
T 1rhf_A 83 GETEISQPVWLTVE-----------GVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA----PSP 147 (182)
T ss_dssp TTCEECCCEEEEEE-----------CSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE----ESS
T ss_pred CCcEEEEEEEEEEe-----------cCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCC----CCc
Confidence 6643 234455544 56777777777789999999999999999999 999999999886543 156
Q ss_pred EEEEEcccCCCCCeEEEEEEEcCCeeeEE-EEEEEE
Q psy16852 264 TKLVIKQTTKKTTGKYEIRVVNEAGEART-SGSVTI 298 (579)
Q Consensus 264 ~~l~i~~~~~~d~G~y~C~a~n~~g~~~~-~~~~~v 298 (579)
..|.|.++ +|+|.|+|.|.|..|.... .+.|.|
T Consensus 148 ~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V 181 (182)
T 1rhf_A 148 SVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL 181 (182)
T ss_dssp EEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred eEEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence 78999988 5899999999999997653 555554
No 133
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.90 E-value=1.5e-23 Score=183.35 Aligned_cols=189 Identities=20% Similarity=0.255 Sum_probs=140.5
Q ss_pred CCCCccccccCceeeeCCCCEEEEEE-EEeeCC-CeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852 4 VLAPRFIEKIQPVVSHQEQPALFTCK-VEGHPL-PTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v~~G~~~~l~C~-~~~~~~-~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (579)
++|+.+...+.++.+.+|+.++|.|. +.+.|. +.+.|++++..+................|.|.+++.+|+|.|+|.+
T Consensus 6 ~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~ 85 (201)
T 3s97_C 6 YLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFV 85 (201)
T ss_dssp EECCCCSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEE
T ss_pred cCCccCcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEE
Confidence 45666666778899999999999999 888888 8999999998775332222333444577999999999999999999
Q ss_pred EcCCeeeEE---EEEEEEEecc-cCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEc
Q psy16852 82 TNIGGVATC---SANLIVLEKE-ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFN 157 (579)
Q Consensus 82 ~~~~g~~~~---~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~ 157 (579)
.+..+.... ...+.+.... ....+|.+........+.+|+.+.|.|.+.+.|.+.+.|++++..+... ..+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~--~~~~-- 161 (201)
T 3s97_C 86 SSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPST--AEIS-- 161 (201)
T ss_dssp EEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTT--CEEE--
T ss_pred EecCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCc--eeec--
Confidence 986654433 2333332211 1112344544455778899999999999999999999999999876543 1221
Q ss_pred CCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852 158 PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198 (579)
Q Consensus 158 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~ 198 (579)
. ....|.|.++..+|+|.|+|.+.|..|....+..+.|.
T Consensus 162 ~--~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 200 (201)
T 3s97_C 162 T--SGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200 (201)
T ss_dssp T--TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred C--CCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence 1 12479999999999999999999999988777777653
No 134
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.90 E-value=1.1e-22 Score=176.37 Aligned_cols=181 Identities=25% Similarity=0.365 Sum_probs=140.9
Q ss_pred CCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 184 (579)
+|.+...+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+...... +..... ...|.|.+++.+|+|.|+|.+.+
T Consensus 7 ~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~-~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~ 83 (192)
T 2iep_A 7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTR-YSIREN--GQLLTILSVEDSDDGIYCCTANN 83 (192)
T ss_dssp EEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTT-EEEEGG--GTEEEESSCCGGGCEEEEEEEEC
T ss_pred CceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCcc-EEEcCC--ccEEEEcCCCcccCeEEEEEEEc
Confidence 456666777788999999999999999999999999999987653322 222211 23699999999999999999999
Q ss_pred CCcee-EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCCe
Q psy16852 185 TFGRA-ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNV 263 (579)
Q Consensus 185 ~~~~~-~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~ 263 (579)
..+.. .....+.+. .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...........
T Consensus 84 ~~~~~~~~~~~l~v~-----------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~ 152 (192)
T 2iep_A 84 GVGGAVESCGALQVK-----------MKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLES 152 (192)
T ss_dssp SSSCCEEEEEEEEEE-----------EEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTT
T ss_pred CCCceeEeEEEEEEE-----------eCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecC
Confidence 87763 344455544 345555566667788999999999999999999999999998876653333334
Q ss_pred EEEEEcccCCCCCeEEEEEEEcCCeeeE-EEEEEEEE
Q psy16852 264 TKLVIKQTTKKTTGKYEIRVVNEAGEAR-TSGSVTIT 299 (579)
Q Consensus 264 ~~l~i~~~~~~d~G~y~C~a~n~~g~~~-~~~~~~v~ 299 (579)
..|.|.++..+|+|.|+|.|.|..|... ..+.+.|.
T Consensus 153 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~ 189 (192)
T 2iep_A 153 GSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189 (192)
T ss_dssp SCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred CcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEE
Confidence 5799999999999999999999998764 34555554
No 135
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.90 E-value=1e-21 Score=170.33 Aligned_cols=177 Identities=21% Similarity=0.388 Sum_probs=135.1
Q ss_pred EEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCC
Q psy16852 297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENA 376 (579)
Q Consensus 297 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 376 (579)
.+.+..|..+.|.|. +.|.|.+.+.|++++..+....++..... . ..|.|.++..+|+
T Consensus 13 ~~~v~~G~~v~l~C~-------------------~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~--~~L~i~~~~~~d~ 70 (192)
T 2va4_A 13 NATAERGEEMTFSCR-------------------ASGSPEPAISWFRNGKLIEENEKYILKGS-N--TELTVRNIINSDG 70 (192)
T ss_dssp EEETTSCCCEEEECE-------------------EECSSCCEEEEEETTEECCCSSSEEEETT-T--TEEEECSCCGGGC
T ss_pred EEEEecCCCEEEEEe-------------------eccCCCCeEEEEECCeEcCCCccEEEeCC-e--eEEEEecCChhcC
Confidence 345566666666664 56678889999999999988776655322 2 2799999999999
Q ss_pred EEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeC--CEEcCCCCCe
Q psy16852 377 GLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRG--KEEILPDNGH 454 (579)
Q Consensus 377 G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~--~~~l~~~~~~ 454 (579)
|.|+|.+.|..|.....+.|.|.. +|.+... ....+..|+.++|.|.+.|.|.+.+.|+++ +..+.....
T Consensus 71 G~Y~C~~~~~~~~~~~~~~l~V~~------~p~~~~~-~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~- 142 (192)
T 2va4_A 71 GPYVCRATNKAGEDEKQAFLQVFV------QPHIIQL-KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDK- 142 (192)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEE------EEEEEEE-CCEEECTTSEEEEEEEEEEESCCEEEEEETTTTEEECTTCB-
T ss_pred cEEEEEEEccccccceEEEEEEEc------cCccccc-CcceEEeCCeEEEEEEecCCCCCcEEEEeCCCCceeecccc-
Confidence 999999999999888888888876 4545433 334567899999999999999999999998 544432210
Q ss_pred eEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 455 TMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 455 ~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
...+.| .+......+.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 143 --------------------~~~~~~---------~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 191 (192)
T 2va4_A 143 --------------------SLDGRI---------EVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191 (192)
T ss_dssp --------------------CTTSCE---------EEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred --------------------ccCCcE---------EEeeccCceEEEEecCCcccCEEEEEEEEecCCceEEEEEEEe
Confidence 111111 2223345677999999999999999999999999999999887
No 136
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.90 E-value=5e-22 Score=171.68 Aligned_cols=178 Identities=20% Similarity=0.271 Sum_probs=135.0
Q ss_pred ecCCCceEEccCCcEEEEEEEEeecCCeEEEEE-CCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852 109 TKPLKPVIAEAQSPATLKATVTGRPTPSICWYR-GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFG 187 (579)
Q Consensus 109 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 187 (579)
...+.+..+.+|+.+.|.|.+.+.|. .+.|++ ++..+....+..+.. .++...|.|.+++.+|+|.|+|.+.+..|
T Consensus 6 ~~~~~~~~v~~G~~v~L~C~~~~~p~-~v~W~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g 82 (189)
T 2v44_A 6 TISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQK--EGVRSRLTIYNANIEDAGIYRCQATDAKG 82 (189)
T ss_dssp EESCSEEEEETTCCEEEEEEEEECCS-EEEEECTTSCBCCCCSSEEEEE--ETTEEEEEECSCCGGGCEEEEEEEECTTS
T ss_pred EecCCceEEecCCcEEEEEEeecCCe-eEEEEeCCCCccCCCceEEEEC--CCCeEEEEEccCCcccCeEEEEEEEeCCC
Confidence 34556778899999999999998877 999999 666666555554443 24567899999999999999999999877
Q ss_pred ee-EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccC--ceEEeCCeE
Q psy16852 188 RA-ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSK--DIETKDNVT 264 (579)
Q Consensus 188 ~~-~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~--~~~~~~~~~ 264 (579)
.. .....+.+. .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+... .........
T Consensus 83 ~~~~~~~~l~v~-----------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~ 151 (189)
T 2v44_A 83 QTQEATVVLEIY-----------QKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN 151 (189)
T ss_dssp CEEEEEEEEEEE-----------CCCEEESCCCSEEEETTSCEEECCEEECSSCCEEEEEEEC--CEECCCTTEEECTTS
T ss_pred CcEEEEEEEEEe-----------cCCceeecCCcEEEeCCCCEEEEEEECcCCCCcEEEEECCcEEeccCCCCEEEecCC
Confidence 65 334444443 4566665566677889999999999999999999999999887532 112222334
Q ss_pred EEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEe
Q psy16852 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300 (579)
Q Consensus 265 ~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~ 300 (579)
.|.|.++..+|+|.|+|.|.|..+.......+.|.+
T Consensus 152 ~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~~~v~V 187 (189)
T 2v44_A 152 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV 187 (189)
T ss_dssp CEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred cEEEEEcCcccCeEEEEEEEccccCceeeeeEEEEE
Confidence 799999999999999999999987766555555543
No 137
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.90 E-value=8.4e-23 Score=180.31 Aligned_cols=180 Identities=19% Similarity=0.299 Sum_probs=134.5
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEe------------cCCCCEEEEEeCCEEEEEEcCCCCCC
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTEL------------HATEHYLITTVESVSTLEIINPTKED 73 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~------------~~~~~~~~~~~~~~~~L~i~~~~~~d 73 (579)
|+.|...|.++.+.+|+.++|.|.+.+.|.+.+.|++++..+ ....++... . ..|.|.+++.+|
T Consensus 1 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~--~~L~i~~v~~~D 76 (212)
T 1f97_A 1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS--S--SGITFSSVTRKD 76 (212)
T ss_dssp CCEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE--T--TEEEESCCCGGG
T ss_pred CceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEee--c--eeEEEcccCccc
Confidence 456778899999999999999999998888899999987653 122333322 2 689999999999
Q ss_pred CEEEEEEEEcCCe--eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEE-EEeecCCeEEEEECCE-EccCC
Q psy16852 74 IGVYTCKATNIGG--VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKAT-VTGRPTPSICWYRGKE-EILPD 149 (579)
Q Consensus 74 ~G~Y~C~~~~~~g--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~-~~~~p~~~i~W~~~~~-~~~~~ 149 (579)
+|.|+|.+.+..| .....+.+.|..++ .+.....+..+.+|+.+.|.|. +.+.|.+.+.|++++. .+...
T Consensus 77 ~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p------~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~ 150 (212)
T 1f97_A 77 NGEYTCMVSEEGGQNYGEVSIHLTVLVPP------SKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTAD 150 (212)
T ss_dssp CEEEEEEEEETTSSSEEEEEEEEEEEBCC------CCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC--
T ss_pred CeEEEEEEEccCCCcccEEEEEEEEEcCC------CCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCccccccc
Confidence 9999999999866 45566777776542 2222223456789999999999 6889999999999998 76643
Q ss_pred CC-------ceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEE
Q psy16852 150 NG-------HTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVL 197 (579)
Q Consensus 150 ~~-------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v 197 (579)
.. ..+.... ....|.|.++..+|+|.|+|.|.|..|....+..+.+
T Consensus 151 ~~~~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l 203 (212)
T 1f97_A 151 AKKTRAFMNSSFTIDP--KSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 203 (212)
T ss_dssp ---CBSCSSSCEEECT--TTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEE
T ss_pred ccccccccCceeEecC--CCceEEEEecChhhCcEEEEEEccccCCccccceEEE
Confidence 32 1222222 2357999999999999999999999998744433333
No 138
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.89 E-value=7.3e-23 Score=177.88 Aligned_cols=176 Identities=11% Similarity=0.087 Sum_probs=129.4
Q ss_pred cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
.+-+|.|...|.. .+.+|++++|.|.+.+ +.+.+.|+|+|..+.... ...........|.|.+++.+|+|.|+|.+.
T Consensus 2 ~~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~-~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~ 78 (196)
T 3p2t_A 2 PLPKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDR-QNPLEPKNKARFSIPSMTEDYAGRYRCYYR 78 (196)
T ss_dssp CBCCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEE-ECCCSSSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccc-cccccCCceEEEEeccCCcccCceEEEEEe
Confidence 4568889888888 8999999999999987 667999999998775321 000111346889999999999999999999
Q ss_pred cCCee--eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCC
Q psy16852 83 NIGGV--ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160 (579)
Q Consensus 83 ~~~g~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~ 160 (579)
|..|. .+..+.+.|.... .+|.+...+.. .+.+|+.++|.|.+.+. ++.+.|++++..+........ .....
T Consensus 79 n~~g~~~~s~~~~l~V~~~~---~~p~~~~~~~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~-~~~~~ 152 (196)
T 3p2t_A 79 SPVGWSQPSDPLELVMTGAY---SKPTLSALPSP-LVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLRSE-HGAQQ 152 (196)
T ss_dssp ETTEEBCCCCCEEEEEECSS---CCCEEEEESCS-EECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEEEE-EEEEE
T ss_pred CCCcccCCCccEEEEecCCC---CCCEEEeCCcc-eecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeeccc-ccccC
Confidence 98873 3445667775432 23444443333 67899999999999874 468999999886643322111 11112
Q ss_pred CeEEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852 161 GECVLSISEATPQDEAVYSVKAVNTFG 187 (579)
Q Consensus 161 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 187 (579)
....|.|.+++.+|+|.|+|.|.|..+
T Consensus 153 ~~~~L~i~~v~~~d~G~Y~C~a~n~~~ 179 (196)
T 3p2t_A 153 HQAEFPMSPVTSVHGGTYRCFSSHGFS 179 (196)
T ss_dssp EEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred cceEEEeCCCcccCCCeEEEEEEcCCC
Confidence 346799999999999999999999866
No 139
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.89 E-value=3e-23 Score=180.23 Aligned_cols=176 Identities=11% Similarity=0.063 Sum_probs=118.6
Q ss_pred CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
+-+|.|...|.. .+.+|++++|.|.+.+.+. .+.|||+|..+..... ..........|.|.+++.+|+|.|+|.+.|
T Consensus 3 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n 79 (196)
T 2d3v_A 3 LSKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQ-NPLEPKNKARFSIPSMTEHHAGRYRCYYYS 79 (196)
T ss_dssp CCBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEE-CCCSSTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccc-cccCCccccEEEeccCChhHCeEEEEEEeC
Confidence 567889888875 7999999999999987665 9999999987643210 001123568899999999999999999998
Q ss_pred CCeee--EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCC
Q psy16852 84 IGGVA--TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161 (579)
Q Consensus 84 ~~g~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~ 161 (579)
..|.. +..+.|.|.... .+|.+...+ ...+.+|+.++|.|.+.+.| +.+.|+|++..+...............
T Consensus 80 ~~g~~~~s~~~~l~V~~~~---~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~ 154 (196)
T 2d3v_A 80 PAGWSEPSDPLELVVTGFY---NKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQF 154 (196)
T ss_dssp TTEECBCCCCEEEEEECSS---CCCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCE
T ss_pred CCCcCCcCccEEEEecCCC---CCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCc
Confidence 87643 344667776532 134444333 34678999999999998888 899999998876432111111111123
Q ss_pred eEEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852 162 ECVLSISEATPQDEAVYSVKAVNTFG 187 (579)
Q Consensus 162 ~~~l~i~~~~~~d~G~Y~C~~~~~~~ 187 (579)
...|.|.+++.+|+|.|+|.|.|..+
T Consensus 155 ~~~L~I~~v~~~D~G~Y~C~a~n~~~ 180 (196)
T 2d3v_A 155 QALFPVGPVTPSHRWMLRCYGSRRHI 180 (196)
T ss_dssp EEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred eeEEEeeecCcccCeeEEEEEEccCC
Confidence 46899999999999999999998765
No 140
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.89 E-value=1.2e-22 Score=172.95 Aligned_cols=158 Identities=13% Similarity=0.124 Sum_probs=124.4
Q ss_pred CcCCCCccccccCceeeeCCCCEEEEEEEEeeCCCe-eEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy16852 2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPT-MTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCK 80 (579)
Q Consensus 2 ~~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~-v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 80 (579)
..+.+|.|...|....+.+|++++|.|.+.+.+.+. +.|+++|..+... ...|.|.+++.+|+|.|+|.
T Consensus 3 ~~~~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~----------~~~L~i~~~~~~d~G~Y~C~ 72 (175)
T 1fnl_A 3 EDLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ----------ASSYFIDAATVNDSGEYRCQ 72 (175)
T ss_dssp CCCCCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS----------CSEEEESSCCGGGCEEEEEE
T ss_pred CCCCCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCC----------ceEEEEeCCCcccCEEEEEE
Confidence 356788899999999999999999999998887665 8999999988643 35899999999999999999
Q ss_pred EEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecC-CeEEEEECCEEccCCCCceEEEcCC
Q psy16852 81 ATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT-PSICWYRGKEEILPDNGHTMEFNPT 159 (579)
Q Consensus 81 ~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~~~~~~~~~~~~~~~~~~~~ 159 (579)
+.|..+ +..+.+.|... +..... ....+.+|+.+.|.|.+.+.++ +.+.|++++..+... .
T Consensus 73 ~~n~~~--s~~~~l~V~~~------~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~------~--- 134 (175)
T 1fnl_A 73 TNLSTL--SDPVQLEVHIG------WLLLQA-PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF------H--- 134 (175)
T ss_dssp CSSSCC--CCCEEEEEECS------SEEEEC-SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE------E---
T ss_pred eeCCcc--cccEEEEEeCC------CceeeC-CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC------C---
Confidence 987544 34456666522 222222 3356789999999999987666 499999999876321 0
Q ss_pred CCeEEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852 160 TGECVLSISEATPQDEAVYSVKAVNTFGR 188 (579)
Q Consensus 160 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 188 (579)
....|.|.+++.+|+|.|+|.|.|..+.
T Consensus 135 -~~~~L~i~~v~~~d~G~Y~C~a~n~~~~ 162 (175)
T 1fnl_A 135 -HNSDFHIPKATLKDSGSYFCRGLVGSKN 162 (175)
T ss_dssp -ECCCEEESSCCGGGCEEEEEEEEETTEE
T ss_pred -CCCEEEEcccChhhCeEEEEEEEcCCCC
Confidence 1246999999999999999999997554
No 141
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.88 E-value=9.9e-22 Score=177.18 Aligned_cols=174 Identities=21% Similarity=0.339 Sum_probs=128.0
Q ss_pred EEEeeeCCCeEEEEECCEEccCCCeEE--EEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCC
Q psy16852 329 VVVTGKPTPLVTWSHDGTPMKEGKEVT--IYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGE 406 (579)
Q Consensus 329 ~~~~g~p~~~i~W~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~ 406 (579)
|.+.|.|.+.+.|++++..+....... .... ....|.|.++..+|+|.|+|.+.|..|.....+.|.|..... .
T Consensus 37 C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~--~ 112 (241)
T 3grw_A 37 CPAAGNPTPSISWLKNGREFRGEHRIGGIKLRH--QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP--H 112 (241)
T ss_dssp CCEECSSCCEEEEEETTEECCGGGSTTCCEEEG--GGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC--C
T ss_pred EEecCCCCceeEEEECCcccCCCCcccceeeec--cceEEEEEeCCcccCEEEEEEEeecCCceEEEEEEEEeccCC--C
Confidence 335677888999999999886543221 1122 223799999999999999999999999888888888876422 2
Q ss_pred CCee-ecCCCceeeecCCCeEEEEEEEeeCCCeEEEee----CCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEE
Q psy16852 407 APKF-TKPLKPVIAEAQSPATLKATVTGRPTPSICWYR----GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYS 481 (579)
Q Consensus 407 ~p~~-~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~----~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 481 (579)
+|.+ ...+....+..|+.++|.|.+.|.|.+.+.|++ ++..+..+....... ...
T Consensus 113 ~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~--------~~~------------ 172 (241)
T 3grw_A 113 RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTV--------LKS------------ 172 (241)
T ss_dssp CCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEE--------EEE------------
T ss_pred CceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeee--------eeE------------
Confidence 3333 334566778899999999999999999999999 777775544322211 000
Q ss_pred EEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 482 VKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 482 c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.........+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 173 -------~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 217 (241)
T 3grw_A 173 -------WISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVH 217 (241)
T ss_dssp -------EECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC-
T ss_pred -------eeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEec
Confidence 000111234669999999999999999999999999999999875
No 142
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.88 E-value=1.8e-22 Score=175.85 Aligned_cols=166 Identities=12% Similarity=0.110 Sum_probs=126.3
Q ss_pred CCCCccccccCceeeeCCCCEEEEEEEEeeCCCe-eEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPT-MTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~-v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
+-+|.+...|.+..+.+|++++|.|.+.+.+.+. +.|+++|..+.... ..|.|.+++.+|+|.|+|.+.
T Consensus 5 ~p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~----------~~L~i~~v~~~D~G~Y~C~a~ 74 (204)
T 3sgj_C 5 LPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA----------SSYFIDAATVDDSGEYRCQTQ 74 (204)
T ss_dssp -CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS----------SEEEESSCCGGGCEEEEEEET
T ss_pred CCCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc----------cEEEEecccccCCEEEEEEeC
Confidence 4567888889989999999999999998887665 99999999886553 679999999999999999998
Q ss_pred cCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cCCeEEEEECCEEccCCCCceEEEcCCCC
Q psy16852 83 NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTPSICWYRGKEEILPDNGHTMEFNPTTG 161 (579)
Q Consensus 83 ~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~~ 161 (579)
|. ..+..+.+.|... +.+...+ ...+.+|+.++|.|.+.+. |.+.+.|++++..+.... .
T Consensus 75 n~--~~s~~~~l~V~~~------p~~~~~~-~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~----------~ 135 (204)
T 3sgj_C 75 LS--TLSDPVQLEVHIG------WLLLQAP-RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFH----------H 135 (204)
T ss_dssp TS--BCCCCEEEEEECS------SEEEECS-CSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEE----------E
T ss_pred CC--cccccEEEEEecC------ceEecCC-ceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeeccc----------C
Confidence 74 3444567777643 2333333 2567789999999999655 558999999998753211 1
Q ss_pred eEEEEECcCCCCCCeEEEEEEEcCCc-eeEEEEEEEEe
Q psy16852 162 ECVLSISEATPQDEAVYSVKAVNTFG-RAECRANLVLR 198 (579)
Q Consensus 162 ~~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~~v~ 198 (579)
...|.|.++..+|+|.|+|.+.|..+ .......+.|.
T Consensus 136 ~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~ 173 (204)
T 3sgj_C 136 NSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITIT 173 (204)
T ss_dssp CCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred CceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEe
Confidence 23699999999999999999999543 33334445444
No 143
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.88 E-value=4.2e-22 Score=175.78 Aligned_cols=181 Identities=17% Similarity=0.190 Sum_probs=132.2
Q ss_pred CccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEEe------------cCCCCEEEEEeCCEEEEEEcCCCCC
Q psy16852 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTEL------------HATEHYLITTVESVSTLEIINPTKE 72 (579)
Q Consensus 7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~~------------~~~~~~~~~~~~~~~~L~i~~~~~~ 72 (579)
|.+..+| .+.+.+|++++|.|.+.+.+.+.+.|||. +... ....++.........+|.|.+++.+
T Consensus 2 ~~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 80 (213)
T 3mj8_L 2 YTLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAG 80 (213)
T ss_dssp CCBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred eeEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChh
Confidence 5667777 99999999999999999888889999992 2211 0234666666777889999999999
Q ss_pred CCEEEEEEEEcCCe---eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC-CeEEEEECCEEcc
Q psy16852 73 DIGVYTCKATNIGG---VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT-PSICWYRGKEEIL 147 (579)
Q Consensus 73 d~G~Y~C~~~~~~g---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~ 147 (579)
|+|.|+|.+.+..+ .....+.+.|...+ ..+|.+...+....+.+|+.++|.|.+.+. |+ +.|.|++++..+.
T Consensus 81 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~ 158 (213)
T 3mj8_L 81 DEADYYCQSWDGTNSAWVFGSGTKVTVLGQP--NAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPIT 158 (213)
T ss_dssp GCEEEEEEEEETTTTEEEEBCCEEEEEECSC--CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred hCEEEEEEeccCCcceeEEcCceEEEEeCCC--CCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccC
Confidence 99999999999876 34455677776432 134555544444445589999999999886 33 4999999999886
Q ss_pred CCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEE
Q psy16852 148 PDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAEC 191 (579)
Q Consensus 148 ~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 191 (579)
.......... .++ ...|.|.++..+|+|.|+|.|.|..+....
T Consensus 159 ~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~ 205 (213)
T 3mj8_L 159 QGVKTTQPSK-SDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEK 205 (213)
T ss_dssp TTEEECCCEE-ETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEE
T ss_pred CCcccCCcCc-cCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEe
Confidence 5311110000 111 246999999999999999999998765443
No 144
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.88 E-value=7e-22 Score=172.74 Aligned_cols=179 Identities=12% Similarity=0.050 Sum_probs=130.7
Q ss_pred cccccCceeeeCCCCEEEEEEEEeeCC-----CeeEEEE-CCEEecCCCCEEEEEe---CCEEEEEEcCCCCCCCEEEEE
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEGHPL-----PTMTWQK-DGTELHATEHYLITTV---ESVSTLEIINPTKEDIGVYTC 79 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~-----~~v~W~~-~g~~~~~~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C 79 (579)
+..++.++.+.+|++++|.|.+.+.|. +.+.|+| ++.......+..+... .+..+|.|.+++.+|+|.|+|
T Consensus 5 v~~p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 84 (202)
T 3bp6_B 5 VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRC 84 (202)
T ss_dssp EECSCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEE
T ss_pred EecCCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEE
Confidence 344566799999999999999988765 7899999 4444433444333221 146899999999999999999
Q ss_pred EEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCC
Q psy16852 80 KATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 159 (579)
Q Consensus 80 ~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~ 159 (579)
.+.+..+.....+.|.|...+ ..|.+.. ..+.+|+.+.|.|.+.|+|.+.+.|++++..+. ........
T Consensus 85 ~~~~~~~~~~~~~~l~V~~~~---~~p~~~~----~~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~~~----~~~~~~~~ 153 (202)
T 3bp6_B 85 LVICGAAWDYKYLTVKVKASY---MRIDTRI----LEVPGTGEVQLTCQARGYPLAEVSWQNVSVPAN----TSHIRTPE 153 (202)
T ss_dssp EEEETTEEEEEEEEEEEEBCC---CCEEEEE----EECTTTCCEEEEEEEEEBSCCEEEETTCCSCCE----EEEEECTT
T ss_pred EEEeCCCcceEEEEEEecCCC---CcccEEE----EecCCCCeEEEEEEccccCCceEEEEeCCCCcc----CceeeCCC
Confidence 999998877778888887532 1222211 245689999999999999999999999776432 12222233
Q ss_pred CCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852 160 TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198 (579)
Q Consensus 160 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~ 198 (579)
+....+.+..+..+|.|.|+|.|.|..|.......+.+.
T Consensus 154 ~~~~~~~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~v~ 192 (202)
T 3bp6_B 154 GLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPL 192 (202)
T ss_dssp SCEEEEEEEEECCCTTCCEEEEEEETTTTEEEEEEECC-
T ss_pred CCEEEEEEEEEEcCCCCEEEEEEEcCCcccccEEEEEec
Confidence 334567788899999999999999999988777766553
No 145
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.88 E-value=1.5e-21 Score=174.89 Aligned_cols=175 Identities=22% Similarity=0.383 Sum_probs=129.1
Q ss_pred EEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCC
Q psy16852 329 VVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAP 408 (579)
Q Consensus 329 ~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p 408 (579)
|.+.|.|.+.+.|++++..+.............+...|.|.++..+|+|.|+|.+.|..|.......|.|...+. .+|
T Consensus 41 C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~--~~p 118 (231)
T 3ojm_B 41 CPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSR--HRP 118 (231)
T ss_dssp CCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC--CCC
T ss_pred EecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCcccccEEEEEEcCCC--CCC
Confidence 446778889999999999886554321111111223799999999999999999999999888888888876432 234
Q ss_pred eeec-CCCceeeecCCCeEEEEEEEeeCCCeEEEee----CCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEE
Q psy16852 409 KFTK-PLKPVIAEAQSPATLKATVTGRPTPSICWYR----GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 483 (579)
Q Consensus 409 ~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~----~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 483 (579)
.+.. .+....+..|+.++|.|.+.|.|.|.+.|++ +|..+..+....... .....
T Consensus 119 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~--------~~~~~------------ 178 (231)
T 3ojm_B 119 ILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKV--------LKHSG------------ 178 (231)
T ss_dssp EECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEE--------EEECS------------
T ss_pred ceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeE--------ecccc------------
Confidence 4433 3456788999999999999999999999999 777665443322111 00000
Q ss_pred eecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 484 ASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 484 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
......+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 179 --------~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 220 (231)
T 3ojm_B 179 --------INSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVL 220 (231)
T ss_dssp --------TTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred --------cccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEe
Confidence 012234569999999999999999999999999999999986
No 146
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.88 E-value=4.9e-22 Score=172.90 Aligned_cols=177 Identities=13% Similarity=0.147 Sum_probs=122.8
Q ss_pred cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
.+-+|.|...|.. .+.+|++++|.|.+.+.+. .+.|+|+|..+...... .........|.|.+++.+|+|.|+|.+.
T Consensus 2 ~~~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a~ 78 (198)
T 1ugn_A 2 HLPKPTLWAEPGS-VITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRI-PQELVKKGQFPIPSITWEHTGRYRCYYG 78 (198)
T ss_dssp CCCCCEEEEESCS-EEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTS-CHHHHTTTEEEESSCCGGGCEEEEEEEE
T ss_pred CCCCCeEeccCCC-cccCCCcEEEEEEecCCCc-EEEEEECCccccccccc-cccCCcccEEEECCCCHHHCeEEEEEEE
Confidence 4568888888874 8999999999999987665 79999999877421100 0011123679999999999999999999
Q ss_pred cCC-e--eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCC
Q psy16852 83 NIG-G--VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 159 (579)
Q Consensus 83 ~~~-g--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~ 159 (579)
|.. | ..+..+.|.|...+ ..|.+...+ ...+.+|+.++|.|.+.+. .+.+.|++++..+.............
T Consensus 79 n~~~g~~~~s~~~~l~V~~~~---~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~ 153 (198)
T 1ugn_A 79 SDTAGRSESSDPLELVVTGAY---IKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARG 153 (198)
T ss_dssp ETTTEECCCCCCEEEEEECSS---CCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------
T ss_pred CCCCCcccCCccEEEEEcccc---cCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCC
Confidence 987 5 33455677776521 133443332 3567899999999999877 78999999988764332111111111
Q ss_pred CCeEEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852 160 TGECVLSISEATPQDEAVYSVKAVNTFG 187 (579)
Q Consensus 160 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 187 (579)
.....|.|.+++.+|+|.|+|.|.|..+
T Consensus 154 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~~ 181 (198)
T 1ugn_A 154 SSRAIFSVGPVSPSRRWWYRCYAYDSNS 181 (198)
T ss_dssp CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred cceeEEEecccCcccCeEEEEEEEeCCC
Confidence 2357899999999999999999999865
No 147
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.88 E-value=1.7e-21 Score=173.53 Aligned_cols=179 Identities=17% Similarity=0.148 Sum_probs=121.9
Q ss_pred ccCceeeeCCCCEEEEEEEEeeCCC---eeEEEECCEE-----------ecC------CCCEEEEE---eCCEEEEEEcC
Q psy16852 12 KIQPVVSHQEQPALFTCKVEGHPLP---TMTWQKDGTE-----------LHA------TEHYLITT---VESVSTLEIIN 68 (579)
Q Consensus 12 ~p~~~~v~~G~~~~l~C~~~~~~~~---~v~W~~~g~~-----------~~~------~~~~~~~~---~~~~~~L~i~~ 68 (579)
+++++.+.+|++++|.|.+.+.+.+ .|.|+|++.. +.. ..+..... ..+..+|+|.+
T Consensus 10 P~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~ 89 (226)
T 4f80_A 10 PSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHN 89 (226)
T ss_dssp CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESS
T ss_pred CCCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEee
Confidence 4556899999999999999866544 6999986632 211 11222211 12468999999
Q ss_pred CCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEe-ecCCeEEEEECCEEcc
Q psy16852 69 PTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTPSICWYRGKEEIL 147 (579)
Q Consensus 69 ~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~~ 147 (579)
++.+|+|.|+|.|.|..|.....+.+.+... .........+.+|+.+.|.|.+.+ .|.+.|+|+++++.+.
T Consensus 90 v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~--------~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~ 161 (226)
T 4f80_A 90 VTASDSGKYLCYFQDGDFYEKALVELKVAAL--------GSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENI 161 (226)
T ss_dssp CCGGGCEEEEEEEEETTEEEEEEEEEEEEBC--------CCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBC
T ss_pred CchHHCeeEEEEEECCCcEEEEEEEEeeccc--------eecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEc
Confidence 9999999999999998887766555444321 112223456778999999999987 5889999999776655
Q ss_pred CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852 148 PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198 (579)
Q Consensus 148 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~ 198 (579)
.........+..+....+.+..++.+|+|.|+|.|.|..|....+..+.|.
T Consensus 162 ~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~ 212 (226)
T 4f80_A 162 PTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIA 212 (226)
T ss_dssp CCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCC
T ss_pred CCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEEC
Confidence 444333333333333344555678899999999999999988887777654
No 148
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.88 E-value=1.9e-21 Score=167.19 Aligned_cols=167 Identities=16% Similarity=0.299 Sum_probs=127.5
Q ss_pred eeeeCCCCEEEEEEEEeeCCC--eeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEE
Q psy16852 16 VVSHQEQPALFTCKVEGHPLP--TMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSAN 93 (579)
Q Consensus 16 ~~v~~G~~~~l~C~~~~~~~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~ 93 (579)
..+.+|+.++|.|.+.+.+.+ .+.|+++|..+...... .....|.|. +.+|+|.|+|.+.|.. ...+.
T Consensus 8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~-----~~~~~l~i~--~~~d~G~Y~C~~~n~~---~~~~~ 77 (184)
T 3b5h_A 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-----GQKTEFKVD--SDDQWGEYSCVFLPEP---MGTAN 77 (184)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-----CSEEEEEEC--GGGCCEEEEEEEESTT---SCEEE
T ss_pred EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc-----CCcEEEEEe--chhhCeEEEEEEECCc---CcEEE
Confidence 567899999999999887776 89999999988765422 224567777 6899999999999732 24556
Q ss_pred EEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeec-CCeEEEEE---CCEE-ccCCCCceEEEcCCCCeEEEEEC
Q psy16852 94 LIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP-TPSICWYR---GKEE-ILPDNGHTMEFNPTTGECVLSIS 168 (579)
Q Consensus 94 ~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~---~~~~-~~~~~~~~~~~~~~~~~~~l~i~ 168 (579)
+.|.. +|.+...+....+.+|+.+.|.|.+.+.| .+.+.|++ ++.. +......++......+...|.|.
T Consensus 78 l~V~~------~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 151 (184)
T 3b5h_A 78 IQLHG------PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIE 151 (184)
T ss_dssp EEECC------SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEEC
T ss_pred EEEec------CCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEe
Confidence 67753 45566566677889999999999999999 79999999 4444 43332233333333556789999
Q ss_pred cCC-CCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852 169 EAT-PQDEAVYSVKAVNTFGRAECRANLVLR 198 (579)
Q Consensus 169 ~~~-~~d~G~Y~C~~~~~~~~~~~~~~~~v~ 198 (579)
+++ .+|+|.|+|.|.|..|.......+.|.
T Consensus 152 ~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 182 (184)
T 3b5h_A 152 NLNMEADPGQYRCNGTSSKGSDQAIITLRVR 182 (184)
T ss_dssp SCCTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccccccCceEEEEEEeCCCcceEEEEEEEe
Confidence 999 899999999999999988777666653
No 149
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.88 E-value=2.5e-22 Score=182.53 Aligned_cols=205 Identities=14% Similarity=0.146 Sum_probs=121.4
Q ss_pred CCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeec-----CCeEEEEECC
Q psy16852 69 PTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP-----TPSICWYRGK 143 (579)
Q Consensus 69 ~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-----~~~i~W~~~~ 143 (579)
++.+|+|.|+|.|. |.......+.+.. ++.+...+..+.+.+|+.++|.|.+.+.| .+.+.||+++
T Consensus 11 v~~~dsg~Y~C~a~---g~~~~~~~~~~~~------~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~ 81 (254)
T 2c1o_A 11 VRPGTSVKLSCKAS---GYSFTNYWMNWLR------ELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQR 81 (254)
T ss_dssp ------------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEEC
T ss_pred ecCCccEEEEEcCc---hhhhhhhhhheee------ceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeC
Confidence 67899999999997 4333333333322 44566667788999999999999998877 4899999843
Q ss_pred --EEc----------cCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEE-EEEEEEeeccccCCCCccC
Q psy16852 144 --EEI----------LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAEC-RANLVLRKATTIDKPRVLE 210 (579)
Q Consensus 144 --~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~ 210 (579)
..+ ......++......+..+|.|.+++.+|+|.|+|.+.+..+.... ...+.+.. ...
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~--------~~~ 153 (254)
T 2c1o_A 82 PGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKR--------ADA 153 (254)
T ss_dssp TTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECC--------CCB
T ss_pred CCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECC--------CCC
Confidence 211 111112232222345678999999999999999999987553221 12344421 113
Q ss_pred CCeEeccCCceeeCCCCeEEEEEEEEc-cCC-CeEEEEECCEEeccC-ceE---------EeCCeEEEEEcccCCCCCeE
Q psy16852 211 APTIVRPLQALLVPKDSTVTLEAEYTG-TPT-PEVKWFKNGKEIVSK-DIE---------TKDNVTKLVIKQTTKKTTGK 278 (579)
Q Consensus 211 ~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-~~v~W~~~~~~i~~~-~~~---------~~~~~~~l~i~~~~~~d~G~ 278 (579)
+|.+...........|+.++|.|.+.+ .|+ +.+.|+++|..+... ... .....+.|.|.++..+|+|.
T Consensus 154 ~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~ 233 (254)
T 2c1o_A 154 APTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNS 233 (254)
T ss_dssp CCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCE
T ss_pred CCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCe
Confidence 455554333222335789999999988 444 369999999988765 110 01124689999999999999
Q ss_pred EEEEEEcCCeee
Q psy16852 279 YEIRVVNEAGEA 290 (579)
Q Consensus 279 y~C~a~n~~g~~ 290 (579)
|+|.|.|.....
T Consensus 234 Y~C~a~n~~~~~ 245 (254)
T 2c1o_A 234 YTCEATHKTSTS 245 (254)
T ss_dssp EEEEEECTTCSS
T ss_pred EEEEEEcCCCCC
Confidence 999999987654
No 150
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.88 E-value=1.7e-21 Score=172.51 Aligned_cols=185 Identities=22% Similarity=0.338 Sum_probs=137.6
Q ss_pred CCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCe--EEEEECcCCCCCCeEEEEE
Q psy16852 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE--CVLSISEATPQDEAVYSVK 181 (579)
Q Consensus 104 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~ 181 (579)
.+|.+...+..+.+.+|+.+.|.|.+.+.|.+.|.|++++..+..............+. ..|.|.+++.+|+|.|+|.
T Consensus 8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~ 87 (217)
T 2vr9_A 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCV 87 (217)
T ss_dssp CCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEE
T ss_pred CCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEE
Confidence 46778888888999999999999999998999999999999887653222222222222 2346889999999999999
Q ss_pred EEcCCceeEE-EEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEE-EccCCCeEEEEECCEEeccCc---
Q psy16852 182 AVNTFGRAEC-RANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEY-TGTPTPEVKWFKNGKEIVSKD--- 256 (579)
Q Consensus 182 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~i~~~~--- 256 (579)
+.+..|.... ...+.+.. .+|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....
T Consensus 88 ~~n~~g~~~~~~~~l~v~~----------~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~ 157 (217)
T 2vr9_A 88 AKNRVGQAVSRHASLQIAV----------LRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMS 157 (217)
T ss_dssp EEETTEEEECCCEEEEECE----------ECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC-
T ss_pred EecCCCccccccceEEEEE----------eCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccc
Confidence 9998876532 34444432 23344444556678899999999998 789999999999999887322
Q ss_pred -----eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEE
Q psy16852 257 -----IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298 (579)
Q Consensus 257 -----~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v 298 (579)
.........|.|.++..+|+|.|+|.|.|..|....+..+.+
T Consensus 158 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv 204 (217)
T 2vr9_A 158 FGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLI 204 (217)
T ss_dssp --CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEE
T ss_pred cccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEE
Confidence 111122347999999999999999999999998776544443
No 151
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.87 E-value=2.8e-22 Score=170.80 Aligned_cols=156 Identities=17% Similarity=0.180 Sum_probs=119.9
Q ss_pred CCCCccccccCceeeeCCCCEEEEEEEEeeCCC-eeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLP-TMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
+-+|.|...|..+.+.+|++++|.|.+.+.+.+ .+.|+++|..+... ...|.|.+++.+|+|.|+|.+.
T Consensus 2 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~ 71 (176)
T 1f2q_A 2 PQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET----------NSSLNIVNAKFEDSGEYKCQHQ 71 (176)
T ss_dssp --CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC----------SSEEEECSCCGGGCEEEEEECT
T ss_pred CCCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCC----------ceEEEEeccceecCEEEEEEcC
Confidence 457889999999999999999999999887764 69999999988643 3689999999999999999998
Q ss_pred cCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEEccCCCCceEEEcCCCC
Q psy16852 83 NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161 (579)
Q Consensus 83 ~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~ 161 (579)
+..+. ..+.+.|.. ++.... .....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.... .
T Consensus 72 ~~~~s--~~~~l~V~~------~~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~----------~ 132 (176)
T 1f2q_A 72 QVNES--EPVYLEVFS------DWLLLQ-ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY----------E 132 (176)
T ss_dssp TSSCC--CCEEEEEEC------SSEEEE-ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC----------C
T ss_pred Ccccc--ccEEEEEeC------cceeec-CCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec----------C
Confidence 75543 345566652 222222 233467799999999999 456668999999998874321 2
Q ss_pred eEEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852 162 ECVLSISEATPQDEAVYSVKAVNTFGR 188 (579)
Q Consensus 162 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 188 (579)
...|.|.+++.+|+|.|+|.+.|..+.
T Consensus 133 ~~~L~i~~v~~~d~G~Y~C~a~n~~~~ 159 (176)
T 1f2q_A 133 NHNISITNATVEDSGTYYCTGKVWQLD 159 (176)
T ss_dssp SSEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred CCeEEECCCCcccCEEEEEEEEeCCcc
Confidence 347999999999999999999997443
No 152
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.87 E-value=8.5e-21 Score=164.94 Aligned_cols=170 Identities=15% Similarity=0.144 Sum_probs=121.0
Q ss_pred cccccCce-eeeCCCCEEEEEEEEeeCCCeeEEEECC-EEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852 9 FIEKIQPV-VSHQEQPALFTCKVEGHPLPTMTWQKDG-TELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGG 86 (579)
Q Consensus 9 ~~~~p~~~-~v~~G~~~~l~C~~~~~~~~~v~W~~~g-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g 86 (579)
+...|.+. .+.+|+.++|.|.+.|.|.+.+.|+++. ..+. . ..........|.|.+++.+|+|.|+|.|.|..|
T Consensus 3 v~i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~--~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~ 78 (202)
T 1vca_A 3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN--G--KVTNEGTTSTLTMNPVSFGNEHSYLCTATCESR 78 (202)
T ss_dssp EEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS--S--EEEEETTEEEEEESSCCGGGCSEEEEEEEETTE
T ss_pred EEECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc--c--eEEEcCCccEEEECcCCHHHCEEEEEEEEECCc
Confidence 44556664 4559999999999999999999999843 2111 1 122344567899999999999999999999988
Q ss_pred eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecC---CeEEEEECCEEccCCCCceEE-E-cCCCC
Q psy16852 87 VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT---PSICWYRGKEEILPDNGHTME-F-NPTTG 161 (579)
Q Consensus 87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~i~W~~~~~~~~~~~~~~~~-~-~~~~~ 161 (579)
..+..+.|.|...+. .+.+.. . ..+.+|+.++|.|.+.+.++ +.|.|++++..+......... . .....
T Consensus 79 ~~~~~~~l~V~~~p~---~~~~~~--~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~ 152 (202)
T 1vca_A 79 KLEKGIQVEIYSFPK---DPEIHL--S-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETK 152 (202)
T ss_dssp EEEEEEEEEEEBCCS---CCEEEE--S-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEE
T ss_pred eEeeEEEEEEEeCCC---CCEeCC--c-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEE
Confidence 888888888876432 222222 1 45779999999999987644 379999999876432100000 0 00112
Q ss_pred eEEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852 162 ECVLSISEATPQDEAVYSVKAVNTFGR 188 (579)
Q Consensus 162 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 188 (579)
...|.|.....+|.|.|+|+|.|..+.
T Consensus 153 ~~~l~i~~~~~d~~g~ytC~A~n~~~~ 179 (202)
T 1vca_A 153 SLEVTFTPVIEDIGKVLVCRAKLHIDE 179 (202)
T ss_dssp EEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred EEEEEEEeeeccCCCeEEEEEEccccC
Confidence 345788888889999999999998765
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.87 E-value=4.5e-22 Score=189.47 Aligned_cols=182 Identities=22% Similarity=0.219 Sum_probs=143.4
Q ss_pred CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCE-EEEEEEEc
Q psy16852 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIG-VYTCKATN 83 (579)
Q Consensus 5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~ 83 (579)
-+|.|...|.++.+.+|+.++|.|.+.|.|.+.+.|++++..+...... .......+|.|.+++.+|+| .|+|.|.|
T Consensus 157 ~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~--~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n 234 (347)
T 2ifg_A 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK--SGGLPSLGLTLANVTSDLNRKNVTCWAEN 234 (347)
T ss_dssp CCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC--CCCSSEEEEEEESCCSTTTTCCEEECCEE
T ss_pred CCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeeccccc--ceecccceEEEeeCChHHCCCeEEEEEEc
Confidence 3788999999999999999999999999999999999998765322110 12335689999999999999 99999999
Q ss_pred CCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcC-----
Q psy16852 84 IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP----- 158 (579)
Q Consensus 84 ~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~----- 158 (579)
..|.....+.+.|..+| .+. .....+|+.++|.|.+.|.|.+.|.|++++..+............
T Consensus 235 ~~g~~~~~~~l~V~~~P------~i~----~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~ 304 (347)
T 2ifg_A 235 DVGRAEVSVQVNVSFPA------SVQ----LHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANE 304 (347)
T ss_dssp TTEECCEEECCCCBEEE------EEE----ECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTC
T ss_pred CCCCEEEEEEEEEcCCC------eee----eccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCC
Confidence 99988777777775543 220 112347899999999999999999999999998755544433322
Q ss_pred CCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852 159 TTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198 (579)
Q Consensus 159 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~ 198 (579)
....+.|.|.+++.+|+|.|+|.|.|..|....+..+.|.
T Consensus 305 ~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 344 (347)
T 2ifg_A 305 TVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 344 (347)
T ss_dssp CCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSC
T ss_pred cccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEec
Confidence 1235789999999999999999999999987777666543
No 154
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.87 E-value=1.3e-21 Score=172.67 Aligned_cols=174 Identities=13% Similarity=0.113 Sum_probs=128.3
Q ss_pred CccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC--E---Eec---------CCCCEEEEEeCCEEEEEEcCCCCC
Q psy16852 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG--T---ELH---------ATEHYLITTVESVSTLEIINPTKE 72 (579)
Q Consensus 7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g--~---~~~---------~~~~~~~~~~~~~~~L~i~~~~~~ 72 (579)
|.|...|.++.+.+|++++|.|.+.+.+.+.+.|||++ . .+. ...++.........+|.|.+++.+
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 81 (213)
T 3nl4_L 2 VVMTQTPASVSEPVGGTVTIKCQASQSISSYLAWYQQKPGQRPRLLIYETSTLASGVPSRFKGSGSGTDFTLTISDLECA 81 (213)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGG
T ss_pred ccEEeCCCeEEEcCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEeCCccCCCCCccEEEecCCCEEEEEECCCChH
Confidence 56777899999999999999999998888899999942 1 111 135676666677889999999999
Q ss_pred CCEEEEEEEEcCCe---eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEe-ecCCeEEEEECCEEccC
Q psy16852 73 DIGVYTCKATNIGG---VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTPSICWYRGKEEILP 148 (579)
Q Consensus 73 d~G~Y~C~~~~~~g---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~~~ 148 (579)
|+|.|+|.+.+..+ .......+.|... ..+|.+........+.+|+.++|.|.+.+ .|.+.|.|++++..+..
T Consensus 82 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~---~~~p~v~~~~~~~~~~~g~~v~l~C~~~g~~P~~~v~W~k~g~~~~~ 158 (213)
T 3nl4_L 82 DAATYYCQSTYENPTYVSFGGGTEVGVKGD---PVAPTVLIFPPSADLVATGTVTIVCVANKYFPDVTVTWEVDGTTQTT 158 (213)
T ss_dssp GCEEEEEEECCSSTTTCEECCCEEEEEECC---CBCCEEEEECCCHHHHTTSEEEEEEEEEEEBSCCEEEEEETTEECCS
T ss_pred HCEEEEEecCCCCceeEEeCCCeEEEEeCC---CcCCeEEEeCCchhhccCCcEeEEEEEecccCCcEEEEEeCCccCCC
Confidence 99999999998765 3344456666542 23455544334444567999999999988 88899999999988754
Q ss_pred CCCceEE-EcCCCC----eEEEEECcCCCCCCeEEEEEEE
Q psy16852 149 DNGHTME-FNPTTG----ECVLSISEATPQDEAVYSVKAV 183 (579)
Q Consensus 149 ~~~~~~~-~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~ 183 (579)
....... ....++ .+.|.|..+..+|+|.|+|.|.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~ 198 (213)
T 3nl4_L 159 GIENSKTPQNSADCTYNLSSTLTLTSTEYNSHKEYTCKVT 198 (213)
T ss_dssp SEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEE
T ss_pred CeecccCcccCCCCeEEEEEEEEecHHHcCCCCeEEEEEE
Confidence 2100000 000111 2569999999999999999998
No 155
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.87 E-value=5.5e-22 Score=175.37 Aligned_cols=179 Identities=20% Similarity=0.253 Sum_probs=128.9
Q ss_pred cccccCceeeeCCCCEEEEEEEEeeC----CCeeEEEE----------------CCEEecC-----CCCEEEEE---eCC
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEGHP----LPTMTWQK----------------DGTELHA-----TEHYLITT---VES 60 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~~~----~~~v~W~~----------------~g~~~~~-----~~~~~~~~---~~~ 60 (579)
+..++..+.+.+|++++|.|.+.+.+ .+.+.|++ ++..+.. ..+..... ..+
T Consensus 3 i~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 82 (214)
T 3jz7_A 3 ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSG 82 (214)
T ss_dssp ---CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGT
T ss_pred eecCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCC
Confidence 45567789999999999999998776 45899998 4444432 22332211 124
Q ss_pred EEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEE
Q psy16852 61 VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICW 139 (579)
Q Consensus 61 ~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W 139 (579)
..+|.|.+++.+|+|.|+|.+.+..|.....+.|.|...+. +........+.+|+.+.|.|.+ .+.|.+.+.|
T Consensus 83 ~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~------~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W 156 (214)
T 3jz7_A 83 DASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPS------GTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEW 156 (214)
T ss_dssp BCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCB------SCEEEEESCCBTTCCEEEEEECSBCCSSCEEEE
T ss_pred cccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCC------CceeeeecceecCCcEEEEecCCCCCCCCEEEE
Confidence 57899999999999999999999999888888888876532 2221222236789999999999 8899999999
Q ss_pred EECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEE
Q psy16852 140 YRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVL 197 (579)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v 197 (579)
++++........... . .....|.|.++..+|+|.|+|.|.|..|.......+.|
T Consensus 157 ~~~~~~~~~~~~~~~--~--~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V 210 (214)
T 3jz7_A 157 QKLSDSQTMPTPWLA--E--MTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDV 210 (214)
T ss_dssp EECSTTCCCCGGGGG--G--TTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECC
T ss_pred EECCCCCccCcccee--c--cCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEE
Confidence 995432211111110 1 11238999999999999999999999998876666654
No 156
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.87 E-value=9.1e-22 Score=173.66 Aligned_cols=179 Identities=12% Similarity=0.157 Sum_probs=128.2
Q ss_pred ccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC--EEe------------cCCCCEEEEEeCCEEEEEEcCCCCCC
Q psy16852 8 RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG--TEL------------HATEHYLITTVESVSTLEIINPTKED 73 (579)
Q Consensus 8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g--~~~------------~~~~~~~~~~~~~~~~L~i~~~~~~d 73 (579)
.++..|.++.+.+|++++|.|.+.+.+.+.+.|||++ ..+ ....++..........|.|.+++.+|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 82 (213)
T 3d9a_L 3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED 82 (213)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred eEEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhh
Confidence 3566688999999999999999998888899999853 211 11256666666677899999999999
Q ss_pred CEEEEEEEEcCCeeeEE-EEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEe-ecCC-eEEEEECCEEccCCC
Q psy16852 74 IGVYTCKATNIGGVATC-SANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTP-SICWYRGKEEILPDN 150 (579)
Q Consensus 74 ~G~Y~C~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~~~~ 150 (579)
+|.|+|.+.+..+.... .+.+.|.... .+|.+..........+|+.++|.|.+.+ .|.+ .+.|++++..+....
T Consensus 83 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~---~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~ 159 (213)
T 3d9a_L 83 FGMYFCQQSNSWPYTFGGGTKLEIKRAD---AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGV 159 (213)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEECCCC---BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTE
T ss_pred CEEEEEeeecCCcceeCCCEEEEEecCC---CCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCccee
Confidence 99999999987764332 3466665421 2444443333333447999999999987 5554 899999999876541
Q ss_pred CceEEEc-CCCC----eEEEEECcCCCCCCeEEEEEEEcCCcee
Q psy16852 151 GHTMEFN-PTTG----ECVLSISEATPQDEAVYSVKAVNTFGRA 189 (579)
Q Consensus 151 ~~~~~~~-~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (579)
....... ..++ .+.|.|.++..+|+|.|+|.|.|.....
T Consensus 160 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 203 (213)
T 3d9a_L 160 LNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 203 (213)
T ss_dssp EEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred eecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence 1111111 1111 2489999999999999999999987654
No 157
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.87 E-value=5.1e-22 Score=174.77 Aligned_cols=170 Identities=11% Similarity=0.011 Sum_probs=123.8
Q ss_pred CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEE--EEEEcCCCCCCCEEEEEEE
Q psy16852 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS--TLEIINPTKEDIGVYTCKA 81 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~~ 81 (579)
+.+|.|...|. ..+.+|++|+|.|.+.+ +.+.|.|||+|..+...... ........ .|.|.+++.+|+|.|+|.+
T Consensus 7 ~~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 83 (218)
T 1uct_A 7 FPMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGR-RLKFWNETDPEFVIDHMDANKAGRYQCQY 83 (218)
T ss_dssp SCCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSE-ECC----CCCEEEECSCCGGGCEEEEEEE
T ss_pred CCCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccc-cCCCCcceeeEEEEcccccccCEEEEEEE
Confidence 56788888887 57999999999999976 67799999998766432211 10111234 8999999999999999999
Q ss_pred EcCCeee--EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCC
Q psy16852 82 TNIGGVA--TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 159 (579)
Q Consensus 82 ~~~~g~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~ 159 (579)
.|..|.. +..+.|.|.+.. .+|.+...+ ...+.+|+.++|.|...+.|.+.+.|+|++..+... ... .
T Consensus 84 ~n~~~~~~~s~~~~l~V~~~~---~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~----~~~--~ 153 (218)
T 1uct_A 84 RIGHYRFRYSDTLELVVTGLY---GKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ----HQS--G 153 (218)
T ss_dssp EETTTEEEECCCEEEEEECSS---CCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS----EEE--C
T ss_pred EcCCCceeecCCEEEEEcCcc---cCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc----ccC--C
Confidence 9976533 234666665421 234454433 346789999999997666777899999998866431 111 2
Q ss_pred CCeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852 160 TGECVLSISEATPQDEAVYSVKAVNTF 186 (579)
Q Consensus 160 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 186 (579)
.....|.|.+++.+|+|.|+|.+.+..
T Consensus 154 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 180 (218)
T 1uct_A 154 EHPANFSLGPVDLNVSGIYRCYGWYNR 180 (218)
T ss_dssp SSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred CccCEEEEccCCcccCEEEEEEEEcCC
Confidence 234689999999999999999999863
No 158
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.87 E-value=9.4e-22 Score=178.47 Aligned_cols=172 Identities=16% Similarity=0.195 Sum_probs=124.2
Q ss_pred cccccCceeeeCCCCEEEEEEEEe---eCCCeeEEEECCEEec------------------------------CCCCEEE
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEG---HPLPTMTWQKDGTELH------------------------------ATEHYLI 55 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~---~~~~~v~W~~~g~~~~------------------------------~~~~~~~ 55 (579)
+..++.++.+.+|++++|.|.+.+ .+.+.+.|++++.... ...+..+
T Consensus 5 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 84 (250)
T 2fbo_J 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV 84 (250)
T ss_dssp EECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred EEcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence 445567899999999999999987 7778999999874320 0111111
Q ss_pred EEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeee-----EEEEEEEEEecccCCCCCce-ecCCCceEEccCCcEEEEEEE
Q psy16852 56 TTVESVSTLEIINPTKEDIGVYTCKATNIGGVA-----TCSANLIVLEKEESGEAPKF-TKPLKPVIAEAQSPATLKATV 129 (579)
Q Consensus 56 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~-----~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~C~~ 129 (579)
.. .+..+|.|.+++.+|+|.|+|.+.+..+.. ...+.|.|...+. ++.+ ...+....+.+|+.+.|.|.+
T Consensus 85 ~~-~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~---~~~~~~~~~~~~~v~~g~~v~L~C~~ 160 (250)
T 2fbo_J 85 AN-LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTP---SNNVHVSTAEVVQVDEGNDITMTCPC 160 (250)
T ss_dssp SC-TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSC---CSCCEECCCSEEECCTTCCEEECCCE
T ss_pred cc-CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCC---CCeEEEecCceEEecCCCcEEEEEEe
Confidence 10 123579999999999999999999876632 4567777765421 2222 234455777889999999999
Q ss_pred EeecCCeEEEEECCEEccCCCCc----------------------eEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852 130 TGRPTPSICWYRGKEEILPDNGH----------------------TMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFG 187 (579)
Q Consensus 130 ~~~p~~~i~W~~~~~~~~~~~~~----------------------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 187 (579)
.+.|.+.|.|++++..+...... ..... +...|.|.+++.+|+|.|+|.|.|..|
T Consensus 161 ~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~a~N~~g 237 (250)
T 2fbo_J 161 TDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFS---GARNLVIRAAKITDAGRVWCELATGQG 237 (250)
T ss_dssp ESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEE---TTTEEEECSCCGGGCEEEEEEEESSSS
T ss_pred cCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccC---CccEEEEecCCcccCEEEEEEecCCcc
Confidence 99999999999998876543211 11110 224799999999999999999999554
No 159
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.87 E-value=5.8e-22 Score=170.00 Aligned_cols=162 Identities=12% Similarity=0.103 Sum_probs=122.0
Q ss_pred cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
.+-+|.|...|.. .+.+|++++|.|.+.+ +.+.+.|+|+|... ......|.|.+++.+|+|.|+|.+.
T Consensus 5 ~~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~----------~~~~~~L~i~~v~~~D~G~Y~C~a~ 72 (184)
T 2gi7_A 5 PLPKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR----------YQDQAVLFIPAMKRSLAGRYRCSYQ 72 (184)
T ss_dssp CBCCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCC----------EESSSEEEESSCCGGGCEEEEEEEE
T ss_pred CCCCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCccc----------cCcccEEEECcCChhhCceEEEEEE
Confidence 4567888888875 8999999999999977 67799999998751 1123689999999999999999999
Q ss_pred cCCeee--EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCC
Q psy16852 83 NIGGVA--TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160 (579)
Q Consensus 83 ~~~g~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~ 160 (579)
|..|.. +..+.+.|.... .+|.+...+ ...+.+|+.++|.|.+.+. ++.+.|++++..+....... .
T Consensus 73 n~~g~~~~s~~~~l~V~~~~---~~p~i~~~p-~~~v~~G~~v~l~C~~~~~-~~~~~w~k~g~~~~~~~~~~------~ 141 (184)
T 2gi7_A 73 NGSLWSLPSDQLELVATGVF---AKPSLSAQP-GPAVSSGGDVTLQCQTRYG-FDQFALYKEGDPAPYKNPER------W 141 (184)
T ss_dssp ETTEEBCCCCCEEEEEESSS---CCCEEEEEC-CCSSCCTTCEEEEEECSSC-CCEEEEEECCCCTTSCCCCE------E
T ss_pred cCCCccCCCCCEEEEecCcC---CCCEEEeCC-CceecCCCcEEEEEEcCCC-CcEEEEEECCCcCcceecCC------C
Confidence 987642 344666665421 234444433 3456789999999997654 46999999988765422211 1
Q ss_pred CeEEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852 161 GECVLSISEATPQDEAVYSVKAVNTFG 187 (579)
Q Consensus 161 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 187 (579)
....|.|.+++.+|+|.|+|.+.|..+
T Consensus 142 ~~~~L~i~~v~~~D~G~Y~C~a~n~~~ 168 (184)
T 2gi7_A 142 YRASFPIITVTAAHSGTYRCYSFSSRD 168 (184)
T ss_dssp EEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred ceEEEEEccCCccCCeEEEEEEEeCCC
Confidence 235689999999999999999999754
No 160
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.86 E-value=2.2e-21 Score=170.83 Aligned_cols=180 Identities=10% Similarity=0.047 Sum_probs=123.8
Q ss_pred cccCceeeeCC--CCEEEEEEEEeeCCCeeEEEEC---CEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852 11 EKIQPVVSHQE--QPALFTCKVEGHPLPTMTWQKD---GTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG 85 (579)
Q Consensus 11 ~~p~~~~v~~G--~~~~l~C~~~~~~~~~v~W~~~---g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 85 (579)
..|..+.+.+| ++++|.|.+.+ |.+.+.|+++ |..+..+..+... ....|.|.+++.+|+|.|+|.|.|..
T Consensus 12 ~~p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~---~~~~l~I~~v~~~D~G~Y~C~a~n~~ 87 (213)
T 2x1w_L 12 DQHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWD---SKKGFTIPSYMISYAGMVFCEAKIND 87 (213)
T ss_dssp --CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEE---TTTEEEEEGGGTTTCSEEEEEEC---
T ss_pred CCceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCccccc---CCccEEEccCChhcCceEEEEEEECC
Confidence 45688999999 99999999976 6689999984 6666554333221 22469999999999999999998854
Q ss_pred eeeEE-EEEEEEEecccCCCCCcee-cCCCceEEccCCcEEEEEEEEeecC--CeEEEEECCEEccCCCCceEEEcC---
Q psy16852 86 GVATC-SANLIVLEKEESGEAPKFT-KPLKPVIAEAQSPATLKATVTGRPT--PSICWYRGKEEILPDNGHTMEFNP--- 158 (579)
Q Consensus 86 g~~~~-~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~~~~~~~~~~--- 158 (579)
+.... ...+.|... .+|.+. .+...+.+.+|+.++|.|.+.+.|. +.+.|++++..+............
T Consensus 88 ~~~~s~~~~l~v~~~----~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~ 163 (213)
T 2x1w_L 88 ESYQSIMYIVVVVGY----RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 163 (213)
T ss_dssp -CEECCCEEEEECBC----CEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSS
T ss_pred eeEEEEEEEEEEeCC----cccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccC
Confidence 43332 255555321 123333 3444558899999999999998654 589999988754321100001111
Q ss_pred ---CCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852 159 ---TTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198 (579)
Q Consensus 159 ---~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~ 198 (579)
....+.|.|.+++.+|+|.|+|.|.|..|.......+.|.
T Consensus 164 ~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~ 206 (213)
T 2x1w_L 164 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 206 (213)
T ss_dssp CSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred ccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEe
Confidence 1123579999999999999999999999988777777765
No 161
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.86 E-value=1.8e-21 Score=171.66 Aligned_cols=180 Identities=18% Similarity=0.264 Sum_probs=129.7
Q ss_pred ceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEcc----------CCCCceEEEcCCCCeEEEEECcCCCCCCe
Q psy16852 107 KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEIL----------PDNGHTMEFNPTTGECVLSISEATPQDEA 176 (579)
Q Consensus 107 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 176 (579)
.+...+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+. .....+..... ..|.|.+++.+|+|
T Consensus 3 ~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~v~~~D~G 78 (212)
T 1f97_A 3 SVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS----SGITFSSVTRKDNG 78 (212)
T ss_dssp EEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET----TEEEESCCCGGGCE
T ss_pred eEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec----eeEEEcccCcccCe
Confidence 34456677888999999999999988999999999765421 11111222221 57999999999999
Q ss_pred EEEEEEEcCCc--eeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEE-EEccCCCeEEEEECCE-Ee
Q psy16852 177 VYSVKAVNTFG--RAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAE-YTGTPTPEVKWFKNGK-EI 252 (579)
Q Consensus 177 ~Y~C~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~-~~~~p~~~v~W~~~~~-~i 252 (579)
.|+|.+.+..| .......+.+. .+|.+...+....+.+|+.+.|.|. +.+.|.+.+.|++++. .+
T Consensus 79 ~Y~C~~~~~~g~~~~~~~~~l~V~-----------~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l 147 (212)
T 1f97_A 79 EYTCMVSEEGGQNYGEVSIHLTVL-----------VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISML 147 (212)
T ss_dssp EEEEEEEETTSSSEEEEEEEEEEE-----------BCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESB
T ss_pred EEEEEEEccCCCcccEEEEEEEEE-----------cCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccc
Confidence 99999999876 33444444443 2333322223345788999999999 7889999999999998 76
Q ss_pred ccCc----------eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEec
Q psy16852 253 VSKD----------IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA 301 (579)
Q Consensus 253 ~~~~----------~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~ 301 (579)
.... .........|.|.++..+|+|.|+|.|.|..|....+..+.|.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~ 206 (212)
T 1f97_A 148 TADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV 206 (212)
T ss_dssp C-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred cccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEE
Confidence 6432 223344568999999999999999999999998855555555443
No 162
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.86 E-value=1.3e-22 Score=178.59 Aligned_cols=178 Identities=20% Similarity=0.319 Sum_probs=131.6
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEe----------c--CCCCEEEEEeCCEEEEEEcCCCCCC
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTEL----------H--ATEHYLITTVESVSTLEIINPTKED 73 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~----------~--~~~~~~~~~~~~~~~L~i~~~~~~d 73 (579)
++.|...|.++.+.+|+++.|.|.+.+.|.+.+.|++++..+ . ...++. ... ..|.|.+++.+|
T Consensus 4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~--~~~--~~L~i~~~~~~d 79 (209)
T 1nbq_A 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVT--FLP--TGITFKSVTRED 79 (209)
T ss_dssp CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCE--EET--TEEECSCCCTTS
T ss_pred eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceE--eec--cEEEEeeCCHHH
Confidence 456677788899999999999999998888899999987652 1 122222 222 689999999999
Q ss_pred CEEEEEEEEcCCe--eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEEccCCC
Q psy16852 74 IGVYTCKATNIGG--VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDN 150 (579)
Q Consensus 74 ~G~Y~C~~~~~~g--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~ 150 (579)
+|.|+|.+.+..| .....+.+.|..++ .+.....+..+.+|+.+.|.|.+ .+.|.+.+.|++++..+....
T Consensus 80 ~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p------~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~ 153 (209)
T 1nbq_A 80 TGTYTCMVSEEGGNSYGEVKVKLIVLVPP------SKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNP 153 (209)
T ss_dssp CSEEEEEEEETTSSCEECCEEECCEEBCC------CCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCS
T ss_pred CcEEEEEEecCCCCccceEEEEEEEecCC------cCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCcc
Confidence 9999999998765 33445666666543 22222334567899999999997 889999999999998776543
Q ss_pred CceE-----EEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEE
Q psy16852 151 GHTM-----EFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRA 193 (579)
Q Consensus 151 ~~~~-----~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 193 (579)
.... ..........|.|.++..+|+|.|+|.|.|..|....+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~ 201 (209)
T 1nbq_A 154 KSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSN 201 (209)
T ss_dssp SSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECC
T ss_pred ccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccc
Confidence 2110 001111335799999999999999999999998774433
No 163
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.86 E-value=1.4e-21 Score=172.41 Aligned_cols=185 Identities=27% Similarity=0.416 Sum_probs=134.4
Q ss_pred CCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCC---ceEEEcCCCCeE--EEEECcCCCCCCeEEE
Q psy16852 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNG---HTMEFNPTTGEC--VLSISEATPQDEAVYS 179 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~---~~~~~~~~~~~~--~l~i~~~~~~d~G~Y~ 179 (579)
+|.+...+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+..... ........+... .|.|.+++.+|+|.|+
T Consensus 9 pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 88 (212)
T 2v9r_A 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYV 88 (212)
T ss_dssp EEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEE
T ss_pred CcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEE
Confidence 56677777888999999999999999999999999999988764321 112222222211 2445677999999999
Q ss_pred EEEEcCCceeE-EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEE-EccCCCeEEEEECCEEeccCce
Q psy16852 180 VKAVNTFGRAE-CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEY-TGTPTPEVKWFKNGKEIVSKDI 257 (579)
Q Consensus 180 C~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~i~~~~~ 257 (579)
|.+.+..|... ....+.+.. .++.+...+....+..|+.+.|.|.+ .+.|.+.+.|++++..+.....
T Consensus 89 C~~~n~~g~~~~~~~~l~V~~----------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~ 158 (212)
T 2v9r_A 89 CVARNYLGEAVSHDASLEVAI----------LRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDE 158 (212)
T ss_dssp EEEEETTEEEECCCEEEEECE----------ECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTST
T ss_pred EEEECCCCceeecceEEEEEe----------ccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcc
Confidence 99999877542 234444432 23333344455678899999999998 8899999999999999876542
Q ss_pred EEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEE-EEEEEE
Q psy16852 258 ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTS-GSVTIT 299 (579)
Q Consensus 258 ~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~-~~~~v~ 299 (579)
........|.|.++..+|+|.|+|.|.|..|..... +.|.|.
T Consensus 159 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~ 201 (212)
T 2v9r_A 159 RITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVL 201 (212)
T ss_dssp TEEEETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred eEEccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEE
Confidence 111123479999999999999999999999876543 555544
No 164
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.86 E-value=2.5e-21 Score=170.49 Aligned_cols=180 Identities=14% Similarity=0.170 Sum_probs=128.3
Q ss_pred CccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEEec------------CCCCEEEEEeCCEEEEEEcCCCCC
Q psy16852 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTELH------------ATEHYLITTVESVSTLEIINPTKE 72 (579)
Q Consensus 7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~~~------------~~~~~~~~~~~~~~~L~i~~~~~~ 72 (579)
|.+..+| .+.+.+|++++|.|.+. +.+.+.|||+ +..+. ...++.........+|+|.+++.+
T Consensus 2 ~~v~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 78 (211)
T 3tv3_L 2 SALTQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTD 78 (211)
T ss_dssp -CCBCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGG
T ss_pred ceEEeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChh
Confidence 4566666 89999999999999998 7779999994 22211 235666666777889999999999
Q ss_pred CCEEEEEEEEcCCe--eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeec--CCeEEEEECCEEccC
Q psy16852 73 DIGVYTCKATNIGG--VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP--TPSICWYRGKEEILP 148 (579)
Q Consensus 73 d~G~Y~C~~~~~~g--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~~~~~~ 148 (579)
|+|.|+|.+.+..+ .....+.+.|...+ ..+|.+...+....+.+|+.++|.|.+.+.+ .+.+.|++++..+..
T Consensus 79 D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~--~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~ 156 (211)
T 3tv3_L 79 DEAVYYCGSLVGNWDVIFGGGTKLTVLGQP--KAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKA 156 (211)
T ss_dssp GCEEEEEEEEETTTEEEECCCEEEEECCSC--CBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred HCEEEEEEEecCCCceeECCCceEEEeCCC--CcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCC
Confidence 99999999999876 34445667775321 2345555444444444799999999998863 489999999998764
Q ss_pred CCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEE
Q psy16852 149 DNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAEC 191 (579)
Q Consensus 149 ~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 191 (579)
...........++ ...|.|..+..+|+|.|+|.|.|..+....
T Consensus 157 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~ 203 (211)
T 3tv3_L 157 GVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEK 203 (211)
T ss_dssp TEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEE
T ss_pred CcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEe
Confidence 2111111111111 257999999999999999999998765443
No 165
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.86 E-value=3.6e-21 Score=169.30 Aligned_cols=178 Identities=14% Similarity=0.183 Sum_probs=125.2
Q ss_pred ccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC--EEe------------cCCCCEEEEEeCCEEEEEEcCCCCCC
Q psy16852 8 RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG--TEL------------HATEHYLITTVESVSTLEIINPTKED 73 (579)
Q Consensus 8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g--~~~------------~~~~~~~~~~~~~~~~L~i~~~~~~d 73 (579)
.+.. |.++.+.+|++++|.|.+.+.+.+.+.|||++ ..+ ....++..........|.|.+++.+|
T Consensus 3 ~v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 81 (210)
T 1lk3_L 3 VLTQ-PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADD 81 (210)
T ss_dssp CEEC-CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred cEEC-CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHH
Confidence 3455 88999999999999999998888899999942 221 11356666656677899999999999
Q ss_pred CEEEEEEEEcCCeeeEE-EEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC-CeEEEEECCEEccCCC
Q psy16852 74 IGVYTCKATNIGGVATC-SANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT-PSICWYRGKEEILPDN 150 (579)
Q Consensus 74 ~G~Y~C~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~~ 150 (579)
+|.|+|.+.+..+.... ...+.|.... .+|.+..........+|+.++|.|.+.+. |+ ..|.|++++..+....
T Consensus 82 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~---~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~ 158 (210)
T 1lk3_L 82 TAIYFCQQSWNGPLTFGAGTKLELKRAD---AAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGV 158 (210)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEECCCC---BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTE
T ss_pred CeEEEEEEEcCCCceeCCCEEEEEcCCC---cCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCc
Confidence 99999999987654332 3466665421 23444432332234479999999999874 44 3899999999876441
Q ss_pred CceEEE-cCCCC----eEEEEECcCCCCCCeEEEEEEEcCCcee
Q psy16852 151 GHTMEF-NPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRA 189 (579)
Q Consensus 151 ~~~~~~-~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (579)
...... ...++ .+.|.|.++..+|+|.|+|.|.|.....
T Consensus 159 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 202 (210)
T 1lk3_L 159 LDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS 202 (210)
T ss_dssp EEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred eEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence 111100 11112 2479999999999999999999986543
No 166
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.86 E-value=9.8e-21 Score=165.42 Aligned_cols=186 Identities=17% Similarity=0.164 Sum_probs=137.3
Q ss_pred ecCCCceEEccCCcEEEEEE-EEeecC-CeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852 109 TKPLKPVIAEAQSPATLKAT-VTGRPT-PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF 186 (579)
Q Consensus 109 ~~~~~~~~~~~g~~~~l~C~-~~~~p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 186 (579)
...+..+.+.+|+.+.|.|. +.+.|. +.+.|++++..+............. ...|.|.+++.+|+|.|+|.+.+..
T Consensus 12 ~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~~~~~~ 89 (201)
T 3s97_C 12 PEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQT--NGNLYIANVEASDKGNYSCFVSSPS 89 (201)
T ss_dssp SSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTT--TCCEEESSCCGGGCEEEEEEEEEGG
T ss_pred cCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcC--CCeEEECcCCcccCeEEEEEEEecC
Confidence 33557788999999999999 888898 9999999987765333333333222 2469999999999999999999876
Q ss_pred ceeEEEE-EEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEE
Q psy16852 187 GRAECRA-NLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK 265 (579)
Q Consensus 187 ~~~~~~~-~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~ 265 (579)
+...... .+.+... ........+|.+........+..|+.+.|.|.+.+.|.+.+.|++++..+.... ........
T Consensus 90 ~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~-~~~~~~~~ 166 (201)
T 3s97_C 90 ITKSVFSKFIPLIPI--PERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTA-EISTSGAV 166 (201)
T ss_dssp GTEEEECCCEEEEEE--CCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTC-EEETTTTE
T ss_pred CCcchhhcccceeec--cccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCce-eecCCCCE
Confidence 5544321 1111111 011112234555555556778899999999999999999999999998776543 33344568
Q ss_pred EEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299 (579)
Q Consensus 266 l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~ 299 (579)
|.|.++..+|+|.|+|.|.|..|....+..+.|.
T Consensus 167 L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 200 (201)
T 3s97_C 167 LKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200 (201)
T ss_dssp EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence 9999999999999999999999998887777764
No 167
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.86 E-value=8.6e-21 Score=170.77 Aligned_cols=178 Identities=16% Similarity=0.212 Sum_probs=129.8
Q ss_pred CccccccCceeeeCCCCEEEEEEEEeeC----CCeeEEEECC--EE---ec---------CCCCEEEEEeCCEEEEEEcC
Q psy16852 7 PRFIEKIQPVVSHQEQPALFTCKVEGHP----LPTMTWQKDG--TE---LH---------ATEHYLITTVESVSTLEIIN 68 (579)
Q Consensus 7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~----~~~v~W~~~g--~~---~~---------~~~~~~~~~~~~~~~L~i~~ 68 (579)
..|...|.++.+.+|++++|.|.+.+.+ .+.+.|||++ .. +. ...++.........+|+|.+
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 81 (240)
T 1moe_A 2 IVLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDP 81 (240)
T ss_dssp CCEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred CceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcC
Confidence 3566778899999999999999998877 6789999952 21 11 13466666666778999999
Q ss_pred CCCCCCEEEEEEEEcCCee-eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeec--CCeEEEEECC--
Q psy16852 69 PTKEDIGVYTCKATNIGGV-ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP--TPSICWYRGK-- 143 (579)
Q Consensus 69 ~~~~d~G~Y~C~~~~~~g~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~-- 143 (579)
++.+|+|.|+|.+.+..+. ....+.+.|...+....++.+...+....+.+|+.++|.|.+.+.| .+.+.|+++.
T Consensus 82 v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g 161 (240)
T 1moe_A 82 VEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPE 161 (240)
T ss_dssp CCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTT
T ss_pred CChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCC
Confidence 9999999999999987553 3345677776543211223344456677889999999999998876 3699999952
Q ss_pred EEc------c-----------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852 144 EEI------L-----------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184 (579)
Q Consensus 144 ~~~------~-----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 184 (579)
..+ . ...+..+..+......+|.|.+++.+|+|.|+|.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~ 219 (240)
T 1moe_A 162 QGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG 219 (240)
T ss_dssp SCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred CCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence 211 0 1123334433445668899999999999999999984
No 168
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.86 E-value=5.2e-21 Score=169.50 Aligned_cols=180 Identities=14% Similarity=0.190 Sum_probs=124.0
Q ss_pred CccccccCceeeeCCCCEEEEEEEEee-CCCeeEEEECC---EE------------ec---CCCCEEEEEeCCEEEEEEc
Q psy16852 7 PRFIEKIQPVVSHQEQPALFTCKVEGH-PLPTMTWQKDG---TE------------LH---ATEHYLITTVESVSTLEII 67 (579)
Q Consensus 7 p~~~~~p~~~~v~~G~~~~l~C~~~~~-~~~~v~W~~~g---~~------------~~---~~~~~~~~~~~~~~~L~i~ 67 (579)
|.+...| ++.+.+|++++|.|.+.+. +.+.+.|||.. .. .. ...++.........+|.|.
T Consensus 2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 80 (218)
T 3s96_B 2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSIS 80 (218)
T ss_dssp CSEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEES
T ss_pred CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEc
Confidence 5666777 9999999999999999988 78899999932 10 10 1135666556678899999
Q ss_pred CCCCCCCEEEEEEEEcCCe-----eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEe-ecCC-eEEEE
Q psy16852 68 NPTKEDIGVYTCKATNIGG-----VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTP-SICWY 140 (579)
Q Consensus 68 ~~~~~d~G~Y~C~~~~~~g-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~ 140 (579)
+++.+|+|.|+|.+.+..| .....+.+.|...+ ..+|.+...........|+.++|.|.+.+ .|.+ .|.|+
T Consensus 81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~ 158 (218)
T 3s96_B 81 NIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQP--KSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWK 158 (218)
T ss_dssp SCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCC--CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEE
T ss_pred cCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCC--CCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEE
Confidence 9999999999999998664 22334567776432 13445544333334456799999999987 4666 89999
Q ss_pred ECCEEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeE
Q psy16852 141 RGKEEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAE 190 (579)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 190 (579)
+++..+............ ++ ...|.|.....+|+|.|+|.|.|..+...
T Consensus 159 k~g~~l~~~~~~~~~~~~-~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~ 211 (218)
T 3s96_B 159 ANGTPITQGVDTSNPTKE-GNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVE 211 (218)
T ss_dssp ETTEEC---------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEE
T ss_pred ECCEECcCceecCccccc-CCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccc
Confidence 999988653221111111 11 13488888888899999999999876544
No 169
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.7e-20 Score=165.86 Aligned_cols=170 Identities=19% Similarity=0.226 Sum_probs=132.4
Q ss_pred CCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEE
Q psy16852 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAV 183 (579)
Q Consensus 104 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 183 (579)
..+.+...+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+.... ...|.|.+++.+|+|.|+|.+.
T Consensus 17 ~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~-----------~~~L~i~~v~~~d~G~Y~C~~~ 85 (218)
T 3k0w_A 17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN-----------TSELIFNAVHVKDAGFYVCRVN 85 (218)
T ss_dssp --CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCC-----------SSEEEETTCCGGGCEEEEEEEE
T ss_pred CCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCC-----------CCEEEEccCChhhCeEeEEEEE
Confidence 35567777888899999999999999988899999999998876532 2479999999999999999999
Q ss_pred cCCcee-EEEEEEEEeeccccC----CCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceE
Q psy16852 184 NTFGRA-ECRANLVLRKATTID----KPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIE 258 (579)
Q Consensus 184 ~~~~~~-~~~~~~~v~~~~~~~----~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~ 258 (579)
+..+.. .....+.+....... ......+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+....
T Consensus 86 n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~-- 163 (218)
T 3k0w_A 86 NNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-- 163 (218)
T ss_dssp CTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCC--
T ss_pred cCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCC--
Confidence 987644 223445544221100 0001123566667777789999999999999999999999999999886542
Q ss_pred EeCCeEEEEEcccCCCCCeEEEEEEEcCCeee
Q psy16852 259 TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEA 290 (579)
Q Consensus 259 ~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~ 290 (579)
...|.|.++..+|+|.|+|.|.|..|..
T Consensus 164 ----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 191 (218)
T 3k0w_A 164 ----KKLYMVPYVDLEHQGTYWCHVYNDRDSQ 191 (218)
T ss_dssp ----SSEEEESSCCGGGCEEEEEEEECSSCEE
T ss_pred ----CCEEEEeecChhcCEEEEEEEEcCCCCc
Confidence 3479999999999999999999988763
No 170
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.86 E-value=1.7e-21 Score=167.70 Aligned_cols=169 Identities=9% Similarity=0.028 Sum_probs=123.3
Q ss_pred CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
+-+|.|...|.. .+.+|++|+|.|.+.+ +.+.+.|||+|..+..... ..........|.|.+++.+|+|.|+|.+.+
T Consensus 2 l~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 78 (188)
T 1oll_A 2 LPKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRV 78 (188)
T ss_dssp CCCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC-SSCTTCCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCccccccc-ccCCCcceeEEEeCcCCcccCeEEEEEecC
Confidence 457889888887 8999999999999865 3458999999987652110 001123457899999999999999999988
Q ss_pred CCeee--EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCC
Q psy16852 84 IGGVA--TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161 (579)
Q Consensus 84 ~~g~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~ 161 (579)
..+.. +..+.|.|.+.. .+|.+...+ ...+.+|+.++|.|.+.+ +.+.+.|+|++..+.. ... ....
T Consensus 79 ~~~~~~~s~~~~l~V~~~~---~~p~i~~~p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~----~~~--~~~~ 147 (188)
T 1oll_A 79 GELWSEPSNLLDLVVTEMY---DTPTLSVHP-GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV----QRG--YGKV 147 (188)
T ss_dssp TTEECCCCCCEEEEEESCS---CCCEEEEES-CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEE----EEE--ECSS
T ss_pred CCCCCCCCCceEEEecccC---CCCeEEECC-CCccccCCEEEEEEEcCC-CCCEEEEEECCccccc----ccc--CCCc
Confidence 65532 345666665421 234454433 345789999999999765 5579999998875543 111 1234
Q ss_pred eEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852 162 ECVLSISEATPQDEAVYSVKAVNTF 186 (579)
Q Consensus 162 ~~~l~i~~~~~~d~G~Y~C~~~~~~ 186 (579)
...|.|.+++.+|+|.|+|.+.|..
T Consensus 148 ~~~L~I~~v~~~d~G~Y~C~a~n~~ 172 (188)
T 1oll_A 148 QAEFPLGPVTTAHRGTYRCFGSYNN 172 (188)
T ss_dssp EEEEEEEECCGGGCEEEEEECEEET
T ss_pred eeEEEECCCCcCCCcEEEEEEEcCC
Confidence 5789999999999999999998754
No 171
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.85 E-value=2.8e-21 Score=163.71 Aligned_cols=155 Identities=14% Similarity=0.178 Sum_probs=120.3
Q ss_pred CCCccccccCceeeeCCCCEEEEEEEEeeC-CCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHP-LPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
-+|.+...|..+.+.+|+.++|.|.+.+.+ .+.+.|+++|..+.... ..+.|.+++.+|+|.|+|.+.+
T Consensus 3 p~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~----------~~~~~~~~~~~d~G~Y~C~~~~ 72 (170)
T 3ry4_A 3 PKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT----------QPSYRFKANNNDSGEYTCQTGQ 72 (170)
T ss_dssp CBCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCC----------SSEEEEECCGGGCEEEEEEETT
T ss_pred CCCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCc----------cceEEEecccccCeEEEEEEeC
Confidence 457777788888999999999999998876 56899999999987653 3466778999999999999987
Q ss_pred CCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEEccCCCCceEEEcCCCCe
Q psy16852 84 IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 162 (579)
Q Consensus 84 ~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~ 162 (579)
... ...+.+.|... +.+.. .....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.... ..
T Consensus 73 ~~~--s~~~~l~v~~~------~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~----------~~ 133 (170)
T 3ry4_A 73 TSL--SDPVHLTVLFE------WLVLQ-TPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH----------LD 133 (170)
T ss_dssp SBC--CCCEEEEEECC------SEEEE-CSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEES----------SC
T ss_pred CCc--eEeEEEEEECC------ceEec-CCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccccC----------CC
Confidence 433 33466666542 22222 234567889999999999 445668999999988754211 12
Q ss_pred EEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852 163 CVLSISEATPQDEAVYSVKAVNTFGR 188 (579)
Q Consensus 163 ~~l~i~~~~~~d~G~Y~C~~~~~~~~ 188 (579)
..|.|.++..+|+|.|+|.+.|..|.
T Consensus 134 ~~L~i~~v~~~d~G~Y~C~a~n~~g~ 159 (170)
T 3ry4_A 134 PTFSIPQANHSHSGDYHCTGNIGYTL 159 (170)
T ss_dssp CEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred CeEEEEeccccCCEEEEEEEEeCcCc
Confidence 46999999999999999999998875
No 172
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.85 E-value=2.1e-20 Score=166.18 Aligned_cols=182 Identities=14% Similarity=0.152 Sum_probs=122.1
Q ss_pred ccccCceeeeCCCCEEEEEEEEeeCC-----CeeEEEECCEEec---------C------CCCEEEEE---eCCEEEEEE
Q psy16852 10 IEKIQPVVSHQEQPALFTCKVEGHPL-----PTMTWQKDGTELH---------A------TEHYLITT---VESVSTLEI 66 (579)
Q Consensus 10 ~~~p~~~~v~~G~~~~l~C~~~~~~~-----~~v~W~~~g~~~~---------~------~~~~~~~~---~~~~~~L~i 66 (579)
..++..+.+.+|++++|.|.+.+.|. ..+.|+|++..+. . ..+..+.. ..+..+|.|
T Consensus 5 ~~p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I 84 (222)
T 3sbw_C 5 TVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQI 84 (222)
T ss_dssp BCSCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEE
T ss_pred ecCCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEE
Confidence 34567789999999999999876663 3899999764331 0 12222211 124578999
Q ss_pred cCCCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEEC-CEE
Q psy16852 67 INPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRG-KEE 145 (579)
Q Consensus 67 ~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~-~~~ 145 (579)
.+++.+|+|.|+|.+.+ .+.....+.|.|...+ ..+... ....+.+|+.+.|.|.+.|+|.+.+.|+++ +..
T Consensus 85 ~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~---~~~~~~---~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~ 157 (222)
T 3sbw_C 85 TDVKLQDAGVYRCMISY-GGADYKRITVKVNAPY---NKINQR---ILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQV 157 (222)
T ss_dssp SSCCGGGCEEEEEEEES-SSEEEEEEEEEEEBCC---CCCEEE---EEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCE
T ss_pred cCcccccCeEEEEEEEe-CCCceeEEEEEEECCC---CCCCce---eeeeecCCCcEEEEEEecCCCCCeEEEEECCCce
Confidence 99999999999999998 5666677788887432 111111 112567899999999999999999999998 444
Q ss_pred ccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852 146 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198 (579)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~ 198 (579)
+.............+......+..+..+|.|.|+|.|.|..|.......+.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~ 210 (222)
T 3sbw_C 158 LSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIP 210 (222)
T ss_dssp ECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECC
T ss_pred ecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEec
Confidence 43221111111111111122222445689999999999999988888777764
No 173
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.85 E-value=8.2e-21 Score=166.89 Aligned_cols=170 Identities=16% Similarity=0.194 Sum_probs=127.9
Q ss_pred cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecC-------------------CCCEEEEEeCCEEEEEEcCC
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA-------------------TEHYLITTVESVSTLEIINP 69 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~-------------------~~~~~~~~~~~~~~L~i~~~ 69 (579)
|...|.+..+.+|++++|.|.+.+.+.+.+.||+++..... ..++.+ . .+.+|.|.++
T Consensus 2 ~~i~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~--~-~~~~L~i~~v 78 (208)
T 3r4d_A 2 VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII--Y-SNGSLLFQMI 78 (208)
T ss_dssp CEEEEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEE--C-TTSCEEECSC
T ss_pred ccccCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEE--e-cCCeEEEccc
Confidence 45567778899999999999987778889999997542211 112211 1 2347999999
Q ss_pred CCCCCEEEEEEEEcCC-eeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccC
Q psy16852 70 TKEDIGVYTCKATNIG-GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILP 148 (579)
Q Consensus 70 ~~~d~G~Y~C~~~~~~-g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~ 148 (579)
+.+|+|.|+|.+.+.. +.....+.+.|...+ ..|.+...... +.+|+.+.|.|.+.+.| +.+.|++++..+..
T Consensus 79 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~---~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~ 152 (208)
T 3r4d_A 79 TMKDMGVYTLDMTDENYRRTQATVRFHVHQPV---TQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQL 152 (208)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEEEEEEECCC---CCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCC
T ss_pred cccCCeEEEEEEEcccCceeEEEEEEEeccCC---CCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCC
Confidence 9999999999999884 566667777776542 23444443333 78899999999998755 79999999998876
Q ss_pred CCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEE
Q psy16852 149 DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAEC 191 (579)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 191 (579)
..+..+.. . ...|.|.++..+|+|.|+|.|.|..|...+
T Consensus 153 ~~~~~~~~--~--~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s 191 (208)
T 3r4d_A 153 TERMTLSQ--N--NSILRIDPIKREDAGEYQCEISNPVSVRRS 191 (208)
T ss_dssp CSSEEEET--T--TTEEEESSCCGGGCEEEEEEEECTTCCEEC
T ss_pred CCCeEEcC--C--CCEEEEeccCHHhCeEEEEEEecCCCcccC
Confidence 65544332 2 247999999999999999999999887543
No 174
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.85 E-value=1.5e-20 Score=165.63 Aligned_cols=178 Identities=13% Similarity=0.171 Sum_probs=124.7
Q ss_pred ccccccCceeeeCCCCEEEEEEEEeeC---CCeeEEEECC--EEe------------cCCCCEEEEEeCCEEEEEEcCCC
Q psy16852 8 RFIEKIQPVVSHQEQPALFTCKVEGHP---LPTMTWQKDG--TEL------------HATEHYLITTVESVSTLEIINPT 70 (579)
Q Consensus 8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~---~~~v~W~~~g--~~~------------~~~~~~~~~~~~~~~~L~i~~~~ 70 (579)
.+.. |.++.+.+|++++|.|.+.+.+ .+.+.|||++ ..+ ....++..........|+|.+++
T Consensus 3 ~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 81 (212)
T 1q0x_L 3 VVTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQ 81 (212)
T ss_dssp CEEE-CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred eEEC-CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCC
Confidence 3455 8899999999999999998876 3689999963 222 12356666656677899999999
Q ss_pred CCCCEEEEEEEEcCCeeeE-EEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCC--eEEEEECCEEcc
Q psy16852 71 KEDIGVYTCKATNIGGVAT-CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEIL 147 (579)
Q Consensus 71 ~~d~G~Y~C~~~~~~g~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~~~ 147 (579)
.+|+|.|+|.+.+..+... ....+.|...+ ..+|.+..........+|+.++|.|.+.+.+++ .|.|++++..+.
T Consensus 82 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~--~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~ 159 (212)
T 1q0x_L 82 TEDEAIYFCALWSNNKLVFGGGTKLTVLGQP--KSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVT 159 (212)
T ss_dssp GGGCEEEEEEEECSSCEEECCCEEEEECCSC--CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred ccCCEEEEEEEecCchhhcCCCeEEEEecCC--CCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCC
Confidence 9999999999998765332 33456664321 124454433333334578999999999886543 899999998876
Q ss_pred CCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852 148 PDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGR 188 (579)
Q Consensus 148 ~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 188 (579)
............++ .+.|.|..+..+|+|.|+|.|.|....
T Consensus 160 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 204 (212)
T 1q0x_L 160 AGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHS 204 (212)
T ss_dssp TTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred CCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcc
Confidence 54211100111111 246899999999999999999998654
No 175
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.85 E-value=3.6e-21 Score=174.53 Aligned_cols=259 Identities=16% Similarity=0.160 Sum_probs=108.2
Q ss_pred cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE--CCEEe-cCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK--DGTEL-HATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG 85 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~--~g~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 85 (579)
+...|.++.|.+|++++|+|.+....+..+.|.- ....+ ..+. ....|.|.+++.+ |.|+|++....
T Consensus 2 ~~v~P~~~~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~~g~--------~~~~~~l~~v~~~--~~y~C~~~~~~ 71 (291)
T 1mq8_A 2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGN--------NRKVYELSNVQED--SQPMCYSNCPD 71 (291)
T ss_dssp EEEECSEEEECTTCEEEEEEEECCSSCSEEEEECSSCCCCCCCSCS--------SEEEEEEESCCSC--CCCEEEEECSS
T ss_pred eEEeCCccEEcCCCeEEEEEeCCCCCCccceEEecCCCcccccCCC--------ceEEEEEEecccC--CeEEEEEEcCC
Confidence 3456788999999999999999643333588863 11112 1111 2246888888854 46999997554
Q ss_pred eeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cCC--eEEEEECCEEccCCCCceEEEcCCCCe
Q psy16852 86 GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP--SICWYRGKEEILPDNGHTMEFNPTTGE 162 (579)
Q Consensus 86 g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~ 162 (579)
......+.+.|+..|. .+.+.. .+..+.+|+.++|.|.+.+. |.. .|+|||++..+..... ......
T Consensus 72 ~~~~~~v~l~V~~~P~---~v~I~~--~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~-----~~~~~~ 141 (291)
T 1mq8_A 72 GQSTAKTFLTVYWTPE---RVELAP--LPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA-----VGEPAE 141 (291)
T ss_dssp CEEEEECEEEECBCCS---CCCBCC--CCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEEC-----CBTTEE
T ss_pred ccEEEEEEEEEecCCC---CCEEec--CCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccC-----CCCCce
Confidence 4566677788876542 233332 22347789999999999664 443 6999999977643221 111223
Q ss_pred EEEEECcCCCCCCeEEEEEEEcCCce----e--EEEEEEEEeeccccCCCCccCCCeE-eccCCceeeCCCCeEEEEEEE
Q psy16852 163 CVLSISEATPQDEAVYSVKAVNTFGR----A--ECRANLVLRKATTIDKPRVLEAPTI-VRPLQALLVPKDSTVTLEAEY 235 (579)
Q Consensus 163 ~~l~i~~~~~~d~G~Y~C~~~~~~~~----~--~~~~~~~v~~~~~~~~~~~~~~p~~-~~~~~~~~~~~g~~~~l~C~~ 235 (579)
.+|.+...+.+|.+.|+|+|.+..+. . ..+....+. +..+|.. ........+.+|+.++|.|.+
T Consensus 142 ~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~---------V~~~P~~~~~~~~p~~l~eG~~v~l~C~~ 212 (291)
T 1mq8_A 142 VTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQ---------TFVLPATPPQLVSPRVLEVDTQGTVVCSL 212 (291)
T ss_dssp EEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECB---------C----------------------------
T ss_pred EEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEE---------EEecCCCCceecCCcCccCCCeEEEEEEc
Confidence 56777777777888999999987552 1 111112221 2233211 110111257789999999999
Q ss_pred EccCCC---eEEEEECCEEeccCceEEeCCeEEEEEccc---CC--CCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 236 TGTPTP---EVKWFKNGKEIVSKDIETKDNVTKLVIKQT---TK--KTTGKYEIRVVNEAGEARTSGSVTIT 299 (579)
Q Consensus 236 ~~~p~~---~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~---~~--~d~G~y~C~a~n~~g~~~~~~~~~v~ 299 (579)
.|.+++ .+.|+++|+.+..... ..+..+.+... .. ++.+.|+|.|.+..........++|.
T Consensus 213 ~g~~P~~~~~v~w~~~g~~l~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~ 281 (291)
T 1mq8_A 213 DGLFPVSEAQVHLALGDQRLNPTVT---YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIY 281 (291)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CCCCCCcccEEEEEECCEecCceee---ecCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEE
Confidence 986554 6999999998875421 11223333333 23 34667788888754444445555554
No 176
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.85 E-value=4.3e-20 Score=166.94 Aligned_cols=176 Identities=16% Similarity=0.232 Sum_probs=125.0
Q ss_pred cccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--EEe-----------------cCCCCEEEEEe--CCEEEEEEc
Q psy16852 11 EKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--TEL-----------------HATEHYLITTV--ESVSTLEII 67 (579)
Q Consensus 11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~~~-----------------~~~~~~~~~~~--~~~~~L~i~ 67 (579)
..|.++.+.+|++++|.|.+.+.| .+.+.|||++ ... ....++.+... ....+|+|.
T Consensus 7 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 86 (247)
T 2ghw_B 7 VQSGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMN 86 (247)
T ss_dssp EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred EecCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEEC
Confidence 456779999999999999998876 5689999942 111 12245655543 356889999
Q ss_pred CCCCCCCEEEEEEEEcCCee--eEEEEEEEEEeccc---------CCCCCceecCCCceEEccCCcEEEEEEEEeecCCe
Q psy16852 68 NPTKEDIGVYTCKATNIGGV--ATCSANLIVLEKEE---------SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPS 136 (579)
Q Consensus 68 ~~~~~d~G~Y~C~~~~~~g~--~~~~~~~~v~~~~~---------~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~ 136 (579)
+++.+|+|.|+|.+.+..+. ....+.|.|...+. ...++.+...+..+.+.+|+.++|.|.+.+.|.+.
T Consensus 87 ~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~ 166 (247)
T 2ghw_B 87 SLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSN 166 (247)
T ss_dssp SCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTC
T ss_pred cCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccce
Confidence 99999999999999987332 22345677764321 01234455556677889999999999999888889
Q ss_pred EEEEE--CCEEcc----------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852 137 ICWYR--GKEEIL----------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF 186 (579)
Q Consensus 137 i~W~~--~~~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 186 (579)
+.||+ ++..+. .....++.........+|.|.+++.+|+|.|+|.+.+..
T Consensus 167 v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~ 228 (247)
T 2ghw_B 167 LAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNW 228 (247)
T ss_dssp EEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSS
T ss_pred EEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCC
Confidence 99999 444321 111222333334556789999999999999999998754
No 177
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.85 E-value=2.7e-20 Score=170.90 Aligned_cols=180 Identities=13% Similarity=0.181 Sum_probs=127.6
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCE-----Eec---------CCCCEEEEEeCCEEEEEEcCCCC
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGT-----ELH---------ATEHYLITTVESVSTLEIINPTK 71 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~-----~~~---------~~~~~~~~~~~~~~~L~i~~~~~ 71 (579)
.+.|...|.++.+.+|++++|.|.+.+.+.+.+.|||++. .+. ...++.........+|+|.+++.
T Consensus 12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 91 (276)
T 3auv_A 12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP 91 (276)
T ss_dssp CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence 4567778999999999999999999888888999999642 221 13466666666778999999999
Q ss_pred CCCEEEEEEEEcCCee-eEEEEEEEEEecccC--------CCCCceecCCCceEEccCCcEEEEEEEEeec--CCeEEEE
Q psy16852 72 EDIGVYTCKATNIGGV-ATCSANLIVLEKEES--------GEAPKFTKPLKPVIAEAQSPATLKATVTGRP--TPSICWY 140 (579)
Q Consensus 72 ~d~G~Y~C~~~~~~g~-~~~~~~~~v~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~ 140 (579)
+|+|.|+|.+.|..+. ......+.|...+.. ..++.....+....+.+|+.++|.|.+.+.+ .+.+.||
T Consensus 92 ~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~ 171 (276)
T 3auv_A 92 EDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWV 171 (276)
T ss_dssp GGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEE
T ss_pred hhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEE
Confidence 9999999999986543 222356666543210 0112223334567889999999999998766 4899999
Q ss_pred ECC--EEc---c--------------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcC
Q psy16852 141 RGK--EEI---L--------------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNT 185 (579)
Q Consensus 141 ~~~--~~~---~--------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 185 (579)
+++ ..+ . ...++.+..+...+...|.|.+++.+|+|.|+|.+.|.
T Consensus 172 k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 235 (276)
T 3auv_A 172 RQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVF 235 (276)
T ss_dssp EECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred EcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence 963 111 0 12233333333345578999999999999999999997
No 178
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.85 E-value=6.7e-21 Score=168.87 Aligned_cols=182 Identities=14% Similarity=0.136 Sum_probs=127.0
Q ss_pred cccCceeeeCCCCEEEEEEEEeeCCC---eeEEEECCEEecCC------------------CCEEEE---EeCCEEEEEE
Q psy16852 11 EKIQPVVSHQEQPALFTCKVEGHPLP---TMTWQKDGTELHAT------------------EHYLIT---TVESVSTLEI 66 (579)
Q Consensus 11 ~~p~~~~v~~G~~~~l~C~~~~~~~~---~v~W~~~g~~~~~~------------------~~~~~~---~~~~~~~L~i 66 (579)
..|+.+.|.+|++++|.|.+.+.+.+ .|.|+|++..+... .++... ......+|.|
T Consensus 4 ~~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I 83 (218)
T 4frw_A 4 ETSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLL 83 (218)
T ss_dssp ECCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEE
T ss_pred eCCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEE
Confidence 45788999999999999999887765 48999987543211 111110 0112467999
Q ss_pred cCCCCCCCEEEEEEEEcCCeeeEE-EEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEE
Q psy16852 67 INPTKEDIGVYTCKATNIGGVATC-SANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEE 145 (579)
Q Consensus 67 ~~~~~~d~G~Y~C~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~ 145 (579)
.+++.+|+|.|+|.+.+..+.... ...+.+... ++..........+..|+.+.+.|.+.+.|++.|+|++++..
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~ 158 (218)
T 4frw_A 84 RNAVQADEGEYECRVSTFPAGSFQARLRLRVLVP-----PLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKG 158 (218)
T ss_dssp SSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBC-----CCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCC
T ss_pred eeccHHHCCceeEEEEeccCceeeeEEEEEEeee-----ccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcc
Confidence 999999999999999876544333 333333321 22333345556777899999999999999999999999876
Q ss_pred ccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852 146 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198 (579)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~ 198 (579)
+........ .......+.|.|.++..+|+|.|+|.|.|..|.......+.+.
T Consensus 159 ~~~~~~~~~-~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~ 210 (218)
T 4frw_A 159 TTSSRSFKH-SRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH 210 (218)
T ss_dssp EEEEEEEEC-SSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred cccCceEec-CCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence 543211100 0001123579999999999999999999999887777666654
No 179
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.85 E-value=2e-20 Score=165.32 Aligned_cols=191 Identities=16% Similarity=0.240 Sum_probs=132.0
Q ss_pred EEEeccceeeeeeeeeeccc----cCceeeeecCeeEEEeeeCCCeEEEEECCEEccC-----CCeEEEEE--CCCCeEE
Q psy16852 297 TITVAEAETVMMDVRVESHP----TASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKE-----GKEVTIYQ--DTDGLCK 365 (579)
Q Consensus 297 ~v~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~-----~~~~~~~~--~~~~~~~ 365 (579)
.+.+..|..+.|.|.+...+ ...+.|+..... .+.....+.+++++..+.. ..++.... ...+..+
T Consensus 9 ~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 85 (214)
T 3jz7_A 9 RIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSD---NQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDAS 85 (214)
T ss_dssp EEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESS---SSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCC
T ss_pred eEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCC---CCCCceEEEEEeCCeEccccCCccccceEEeccCccCCccc
Confidence 45678899999999877655 235666532100 0011124555567766542 33443322 1123457
Q ss_pred EEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEE-EeeCCCeEEEeeC
Q psy16852 366 LAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRG 444 (579)
Q Consensus 366 l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~ 444 (579)
|.|.+++.+|+|.|+|.|.|..|.....+.|.|.. +|.+........+..|+.++|.|.+ .|.|.|.+.|+++
T Consensus 86 L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~------~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~ 159 (214)
T 3jz7_A 86 INVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV------KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKL 159 (214)
T ss_dssp EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC------CCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEEC
T ss_pred EEEccCChhhCeEEEEEEEeCCCccccEEEEEEEc------CCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEEC
Confidence 99999999999999999999999888889999986 3433333333457889999999999 8999999999995
Q ss_pred CEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeE
Q psy16852 445 KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV 524 (579)
Q Consensus 445 ~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 524 (579)
+.......... .....+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus 160 ~~~~~~~~~~~-------------------------------------~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~ 202 (214)
T 3jz7_A 160 SDSQTMPTPWL-------------------------------------AEMTSPVISVKNASSEYSGTYSCTVQNRVGSD 202 (214)
T ss_dssp STTCCCCGGGG-------------------------------------GGTTSSEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred CCCCccCccce-------------------------------------eccCCCEEEEecCCHHHCEEEEEEEEcCCCcE
Confidence 43221111000 01122359999999999999999999999999
Q ss_pred EEEEEEEEe
Q psy16852 525 TCTATLSLL 533 (579)
Q Consensus 525 ~~~~~l~v~ 533 (579)
..++.|.|.
T Consensus 203 ~~~~~l~V~ 211 (214)
T 3jz7_A 203 QCMLRLDVV 211 (214)
T ss_dssp EEEEEECCB
T ss_pred EEEEEEEEe
Confidence 999998864
No 180
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.85 E-value=1.8e-20 Score=168.37 Aligned_cols=182 Identities=12% Similarity=0.134 Sum_probs=129.0
Q ss_pred CccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC--E-----------E-ecCCCCEEEEEeCCEEEEEEcCCCCC
Q psy16852 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG--T-----------E-LHATEHYLITTVESVSTLEIINPTKE 72 (579)
Q Consensus 7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g--~-----------~-~~~~~~~~~~~~~~~~~L~i~~~~~~ 72 (579)
+.+...|.++.+.+|++++|.|.+.+.+.+.+.|||++ . . .....++.........+|+|.+++.+
T Consensus 25 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 104 (237)
T 3sob_L 25 IQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPE 104 (237)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred ceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChh
Confidence 45666788899999999999999988888899999942 1 1 11245676666677889999999999
Q ss_pred CCEEEEEEEEcCCeee-EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-c-CCeEEEEECCEEccCC
Q psy16852 73 DIGVYTCKATNIGGVA-TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-P-TPSICWYRGKEEILPD 149 (579)
Q Consensus 73 d~G~Y~C~~~~~~g~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~ 149 (579)
|+|.|+|.+.+..+.. .....+.|... ..+|.+..........+|+.++|.|.+.+. | .+.|.|++++..+...
T Consensus 105 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~---~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~ 181 (237)
T 3sob_L 105 DFATYYCQQSYTTPPTFGQGTKVEIKRT---VAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGN 181 (237)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEEECC---CBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSS
T ss_pred hCeEEEEeeccCCceEEcCcEEEEEecC---CCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCc
Confidence 9999999998766432 23456666542 234555443333344568899999999874 4 4899999999987643
Q ss_pred C-CceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEE
Q psy16852 150 N-GHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAEC 191 (579)
Q Consensus 150 ~-~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 191 (579)
. .........++ ...|.|.....+|+|.|+|.|.|.......
T Consensus 182 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~ 228 (237)
T 3sob_L 182 SQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPV 228 (237)
T ss_dssp EEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCE
T ss_pred eeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCce
Confidence 1 00000011111 356889999999999999999998764433
No 181
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.85 E-value=1.3e-20 Score=164.03 Aligned_cols=163 Identities=16% Similarity=0.157 Sum_probs=120.4
Q ss_pred CceecCCCceEEccCCcEEEEEEEEeecCCe-EEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPS-ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184 (579)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 184 (579)
|.+...+....+.+|+.++|.|.+.+.|.+. +.|++++..+.... ..|.|.+++.+|+|.|+|.+.|
T Consensus 8 p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~------------~~L~i~~v~~~D~G~Y~C~a~n 75 (204)
T 3sgj_C 8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA------------SSYFIDAATVDDSGEYRCQTQL 75 (204)
T ss_dssp CEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS------------SEEEESSCCGGGCEEEEEEETT
T ss_pred CeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc------------cEEEEecccccCCEEEEEEeCC
Confidence 4455555557788999999999998887765 99999998875432 4799999999999999999987
Q ss_pred CCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCCeEEEEECCEEeccCceEEeCCe
Q psy16852 185 TFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTPEVKWFKNGKEIVSKDIETKDNV 263 (579)
Q Consensus 185 ~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~i~~~~~~~~~~~ 263 (579)
..... ...+.+. .+|.+...+. ..+.+|+.+.|.|.+.+. |.+.+.|+++|..+... ...
T Consensus 76 ~~~s~--~~~l~V~-----------~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~-----~~~ 136 (204)
T 3sgj_C 76 STLSD--PVQLEVH-----------IGWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF-----HHN 136 (204)
T ss_dssp SBCCC--CEEEEEE-----------CSSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE-----EEC
T ss_pred Ccccc--cEEEEEe-----------cCceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecc-----cCC
Confidence 53332 3344443 3344433333 567789999999999765 55799999999987432 234
Q ss_pred EEEEEcccCCCCCeEEEEEEEcCCe-eeEEEEEEEEE
Q psy16852 264 TKLVIKQTTKKTTGKYEIRVVNEAG-EARTSGSVTIT 299 (579)
Q Consensus 264 ~~l~i~~~~~~d~G~y~C~a~n~~g-~~~~~~~~~v~ 299 (579)
..|.|.++..+|+|.|+|.|.|..+ ..+..+.+.|.
T Consensus 137 ~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~ 173 (204)
T 3sgj_C 137 SDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITIT 173 (204)
T ss_dssp CCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred ceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEe
Confidence 5799999999999999999999543 33334444443
No 182
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.84 E-value=1.8e-21 Score=171.51 Aligned_cols=177 Identities=18% Similarity=0.176 Sum_probs=124.2
Q ss_pred cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEEec------------CCCCEEEEEeCCEEEEEEcCCCCCCC
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTELH------------ATEHYLITTVESVSTLEIINPTKEDI 74 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~~~------------~~~~~~~~~~~~~~~L~i~~~~~~d~ 74 (579)
+.. |.++.+.+|++++|.|.+.+.+.+.+.|||+ |..+. ...++..........|.|.+++.+|+
T Consensus 3 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 81 (212)
T 1nfd_E 3 LIQ-PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDE 81 (212)
T ss_dssp EEC-CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGC
T ss_pred eEC-CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccC
Confidence 445 8889999999999999998777778999985 33221 13566666666778999999999999
Q ss_pred EEEEEEEEcC-Ceee--EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC-CeEEEEECCEEccCC
Q psy16852 75 GVYTCKATNI-GGVA--TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT-PSICWYRGKEEILPD 149 (579)
Q Consensus 75 G~Y~C~~~~~-~g~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~ 149 (579)
|.|+|.+.|. .+.. .....+.|...+ ..+|.+........+.+|+.++|.|.+.+. |+ +.|.|++++..+...
T Consensus 82 G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~--~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~ 159 (212)
T 1nfd_E 82 AAYYCLSSYGDNNDLVFGSGTQLTVLRGP--KSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDG 159 (212)
T ss_dssp SEEEEEEEETTTTEEEECCCEEEEEECCC--CBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSS
T ss_pred EEEEEEEEcccCcccccCCceEEEEccCC--CCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCC
Confidence 9999999962 2221 223456664322 124444443333344579999999999887 54 799999999987654
Q ss_pred CCceEEEcCCCC---eEEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852 150 NGHTMEFNPTTG---ECVLSISEATPQDEAVYSVKAVNTFGR 188 (579)
Q Consensus 150 ~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 188 (579)
..........++ .+.|.|.++..+|+|.|+|.|.|..+.
T Consensus 160 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 201 (212)
T 1nfd_E 160 VKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET 201 (212)
T ss_dssp CBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred eecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence 221111111111 245889999999999999999998664
No 183
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.84 E-value=3e-21 Score=177.11 Aligned_cols=181 Identities=12% Similarity=0.213 Sum_probs=121.6
Q ss_pred CccccccCceeeeCCCCEEEEEEEE---eeCCCeeEEEECCEEecCC------------------CCEEEEE--eCCEEE
Q psy16852 7 PRFIEKIQPVVSHQEQPALFTCKVE---GHPLPTMTWQKDGTELHAT------------------EHYLITT--VESVST 63 (579)
Q Consensus 7 p~~~~~p~~~~v~~G~~~~l~C~~~---~~~~~~v~W~~~g~~~~~~------------------~~~~~~~--~~~~~~ 63 (579)
+.+...|.++.+.+|++++|.|.+. +.+.+.+.|++++...... .+..+.. ...+.+
T Consensus 6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 85 (268)
T 3mj6_A 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS 85 (268)
T ss_dssp ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence 4577788889999999999999997 5666789999965432111 2222210 123477
Q ss_pred EEEcCCCCCCCEEEEEEEEcCCeeeE--EEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE---EeecCCeEE
Q psy16852 64 LEIINPTKEDIGVYTCKATNIGGVAT--CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV---TGRPTPSIC 138 (579)
Q Consensus 64 L~i~~~~~~d~G~Y~C~~~~~~g~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~---~~~p~~~i~ 138 (579)
|.|.+++.+|+|.|+|.+.+..+... ..+.|.|. + ..+....+.+|+.++|.|.+ .+.|.+.+.
T Consensus 86 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--~---------~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~ 154 (268)
T 3mj6_A 86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL--P---------EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVN 154 (268)
T ss_dssp EEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE--C---------CCCSEEEEETTCCEEECCBCEESSSSCCCEEE
T ss_pred EEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe--c---------cCCCccccccCCcEEEEEEecCCCCCCccceE
Confidence 99999999999999999998765443 34444443 1 12335678899999999999 456889999
Q ss_pred EEECCEEccCC--------------------CCceEEEc--CCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEE
Q psy16852 139 WYRGKEEILPD--------------------NGHTMEFN--PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196 (579)
Q Consensus 139 W~~~~~~~~~~--------------------~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~ 196 (579)
|++++...... ...+.... .......|.|.+++.+|+|.|+|.|.|..+.......+.
T Consensus 155 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 234 (268)
T 3mj6_A 155 WMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLH 234 (268)
T ss_dssp EEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred EEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEE
Confidence 99943211100 00011111 112346899999999999999999999888877777776
Q ss_pred Ee
Q psy16852 197 LR 198 (579)
Q Consensus 197 v~ 198 (579)
+.
T Consensus 235 V~ 236 (268)
T 3mj6_A 235 VV 236 (268)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 184
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.84 E-value=2.4e-20 Score=167.65 Aligned_cols=179 Identities=14% Similarity=0.171 Sum_probs=124.8
Q ss_pred CccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC--E---Eec---------CCCCEEEEEeCCEEEEEEcCCCCC
Q psy16852 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG--T---ELH---------ATEHYLITTVESVSTLEIINPTKE 72 (579)
Q Consensus 7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g--~---~~~---------~~~~~~~~~~~~~~~L~i~~~~~~ 72 (579)
+.|...|.++.+.+|++++|.|.+.+.+.+.+.|||+. . .+. ...++.........+|+|.+++.+
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 81 (242)
T 2znx_A 2 IVLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETE 81 (242)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred CcEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChH
Confidence 45677899999999999999999988888899999953 1 111 134666665666789999999999
Q ss_pred CCEEEEEEEEcCCeee-EEEEEEEEEecccC-------CCCCceecCCCceEEccCCcEEEEEEEEeec--CCeEEEEEC
Q psy16852 73 DIGVYTCKATNIGGVA-TCSANLIVLEKEES-------GEAPKFTKPLKPVIAEAQSPATLKATVTGRP--TPSICWYRG 142 (579)
Q Consensus 73 d~G~Y~C~~~~~~g~~-~~~~~~~v~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~ 142 (579)
|+|.|+|.+.+..+.. ...+.|.|...+.. ..++.....+....+.+|++++|.|.+.+.+ .+.+.||++
T Consensus 82 D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~ 161 (242)
T 2znx_A 82 DFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRK 161 (242)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEE
T ss_pred HCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEee
Confidence 9999999999875432 23456777554310 0111122223334688999999999998765 478999995
Q ss_pred C--EEcc----------------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcC
Q psy16852 143 K--EEIL----------------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNT 185 (579)
Q Consensus 143 ~--~~~~----------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 185 (579)
. ..+. ...+..+..+......+|.|.+++.+|+|.|+|.+.+.
T Consensus 162 ~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 222 (242)
T 2znx_A 162 FPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG 222 (242)
T ss_dssp CTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred CCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence 2 2110 12233333333455679999999999999999999873
No 185
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.84 E-value=4.8e-21 Score=162.44 Aligned_cols=154 Identities=21% Similarity=0.230 Sum_probs=113.4
Q ss_pred ceeeeCCCCEEEEEEEEe--eCCCeeEEEECCEEec----------CCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 15 PVVSHQEQPALFTCKVEG--HPLPTMTWQKDGTELH----------ATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 15 ~~~v~~G~~~~l~C~~~~--~~~~~v~W~~~g~~~~----------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
.+.+.+|++++|.|...+ .+.+.|.|+|++..+. ...++.+ . .+++|.|.+++.+|+|.|+|.+.
T Consensus 5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~--~-~~gsL~I~~v~~~D~G~Y~C~~~ 81 (176)
T 1hng_A 5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEI--L-ANGDLKIKNLTRDDSGTYNVTVY 81 (176)
T ss_dssp EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEE--C-TTSCEEESSCCGGGCEEEEEEEE
T ss_pred EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEE--C-CCCcEEEcccccccCEEEEEEEE
Confidence 477899999999995322 3456899999997652 2344443 1 22359999999999999999999
Q ss_pred cCCeee--EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCC
Q psy16852 83 NIGGVA--TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160 (579)
Q Consensus 83 ~~~g~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~ 160 (579)
|..|.. ...+.|.|...+ ..|. ....+..+.|.|.+.+.|.+.|.|++++..+....+
T Consensus 82 n~~g~~~~~~~~~l~V~~~~---~~p~--------i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~--------- 141 (176)
T 1hng_A 82 STNGTRILNKALDLRILEMV---SKPM--------IYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ--------- 141 (176)
T ss_dssp ETTCCEEEEEEEEEEEECCC---CCCE--------EEEETTTTEEEEECSSCSSCEEEEEETTEEEEEESS---------
T ss_pred eCCCCEEEEEEEEEEEeCCC---CCCE--------EEecCCcEEEEEEecCCCCcEEEEEECCEECCCCCc---------
Confidence 988876 556677776431 1122 223355699999999999999999999987754332
Q ss_pred CeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy16852 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANL 195 (579)
Q Consensus 161 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~ 195 (579)
+.|..+..+|+|.|+|.|.|..|.......+
T Consensus 142 ----~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l 172 (176)
T 1hng_A 142 ----KTMSYQWTNLRAPFKCKAVNRVSQESEMEVV 172 (176)
T ss_dssp ----SEEEEECSCCSSCEEEEEEETTEEEEEEECC
T ss_pred ----EEEEEEEccCCeEEEEEEEecCCCceecccc
Confidence 3344677899999999999999877665443
No 186
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.84 E-value=2e-20 Score=164.98 Aligned_cols=179 Identities=13% Similarity=0.134 Sum_probs=127.7
Q ss_pred CccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC---EE--e---------cCCCCEEEEEeCCEEEEEEcCCCCC
Q psy16852 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG---TE--L---------HATEHYLITTVESVSTLEIINPTKE 72 (579)
Q Consensus 7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g---~~--~---------~~~~~~~~~~~~~~~~L~i~~~~~~ 72 (579)
|.+...|..+.+.+|++++|.|.+.+.+.+.+.|||.+ .. + ....++.........+|.|.+++.+
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 81 (213)
T 3r06_A 2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESE 81 (213)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcc
Confidence 56777799999999999999999998888899999832 11 1 1245666666667889999999999
Q ss_pred CCEEEEEEEEcCCee-eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecC--CeEEEEECCEEccCC
Q psy16852 73 DIGVYTCKATNIGGV-ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT--PSICWYRGKEEILPD 149 (579)
Q Consensus 73 d~G~Y~C~~~~~~g~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~ 149 (579)
|+|.|+|.+.+..+. ......+.|... ..+|.+...+.......|+.++|.|.+.+.++ +.+.|++++..+...
T Consensus 82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~---~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~ 158 (213)
T 3r06_A 82 DIGSYYCQQYYNYPWTFGPGTKLEIKRA---DAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDG 158 (213)
T ss_dssp GCSEEEEEECSSSSCEECCCEEEEECCC---CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTT
T ss_pred cCEEEEEecccCCceEEcCCceEEEecc---CCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCc
Confidence 999999999886542 233455666322 23455554444444557888999999988665 499999999987643
Q ss_pred CCceEEE-cCCCC----eEEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852 150 NGHTMEF-NPTTG----ECVLSISEATPQDEAVYSVKAVNTFGR 188 (579)
Q Consensus 150 ~~~~~~~-~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 188 (579)
....... ...++ ...|.|.....+|+|.|+|.+.|....
T Consensus 159 ~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~ 202 (213)
T 3r06_A 159 VLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTST 202 (213)
T ss_dssp EEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred eEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccC
Confidence 1011100 11111 246888888888999999999997644
No 187
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.84 E-value=3.4e-20 Score=163.15 Aligned_cols=182 Identities=13% Similarity=0.097 Sum_probs=119.1
Q ss_pred EEEeccc--eeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEEC---CEEccCCCeEEEEECCCCeEEEEEccc
Q psy16852 297 TITVAEA--ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHD---GTPMKEGKEVTIYQDTDGLCKLAISEV 371 (579)
Q Consensus 297 ~v~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~---~~~~~~~~~~~~~~~~~~~~~l~i~~~ 371 (579)
.+.+.+| ..+.|.|.+ .+ |.+.+.|++. +..+..+..... . ..+ .|.|.++
T Consensus 16 ~v~v~eG~~~~v~L~C~~-------------------~~-p~~~v~w~~~~~~g~~~~~~~~~~~-~-~~~--~l~I~~v 71 (213)
T 2x1w_L 16 VVYITENKNKTVVIPCLG-------------------SI-SNLNVSLCARYPEKRFVPDGNRISW-D-SKK--GFTIPSY 71 (213)
T ss_dssp EEEECCSTTCEEEECCCB-------------------SS-TTCCEEEEEETTTEEECCCSSSCEE-E-TTT--EEEEEGG
T ss_pred EEEEecCCCccEEEeecc-------------------CC-CCcEEEEEhhcCCCccccCCCcccc-c-CCc--cEEEccC
Confidence 4567788 888888864 22 5567888774 666655543322 2 222 6999999
Q ss_pred CCCCCEEEEEEEEcCceeEEEE-EEEEEEecccCCCCCeeec-CCCceeeecCCCeEEEEEEEeeCC--CeEEEeeCCEE
Q psy16852 372 FPENAGLYSCTAVNPVGEAVAA-ATLAVEEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGRPT--PSICWYRGKEE 447 (579)
Q Consensus 372 ~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~--~~v~W~~~~~~ 447 (579)
..+|+|.|+|.|.|..+..... +.|.|.. ..+|.+.. +.....+.+|+.++|.|.+.|.|. +.+.|++++..
T Consensus 72 ~~~D~G~Y~C~a~n~~~~~~s~~~~l~v~~----~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~ 147 (213)
T 2x1w_L 72 MISYAGMVFCEAKINDESYQSIMYIVVVVG----YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSK 147 (213)
T ss_dssp GTTTCSEEEEEEC----CEECCCEEEEECB----CCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSS
T ss_pred ChhcCceEEEEEEECCeeEEEEEEEEEEeC----CcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCc
Confidence 9999999999999864443322 5666633 12344443 444458999999999999998664 48999998876
Q ss_pred cCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEE
Q psy16852 448 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCT 527 (579)
Q Consensus 448 l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 527 (579)
+.......... ..... +. .....++|+|.+++.+|+|.|+|.|.|..|....+
T Consensus 148 ~~~~~~~~~~~------------~~~~~--~~-------------~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~ 200 (213)
T 2x1w_L 148 HQHKKLVNRDL------------KTQSG--SE-------------MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNS 200 (213)
T ss_dssp CCSEEEEEEEE------------CCCSS--CS-------------CEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred cceEEEecccc------------ccccC--cc-------------ceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEE
Confidence 42210000000 00000 00 01123569999999999999999999999999999
Q ss_pred EEEEEe
Q psy16852 528 ATLSLL 533 (579)
Q Consensus 528 ~~l~v~ 533 (579)
+.|.|.
T Consensus 201 ~~l~V~ 206 (213)
T 2x1w_L 201 TFVRVH 206 (213)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999975
No 188
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.84 E-value=1.5e-20 Score=170.73 Aligned_cols=181 Identities=13% Similarity=0.130 Sum_probs=127.1
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeC-----CCeeEEEECC--EEe------------cCCCCEEEEEeCCEEEEEE
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHP-----LPTMTWQKDG--TEL------------HATEHYLITTVESVSTLEI 66 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~-----~~~v~W~~~g--~~~------------~~~~~~~~~~~~~~~~L~i 66 (579)
+|.+...|..+.+.+|++++|.|.+.+.+ .+.+.|||++ ..+ ....++.........+|.|
T Consensus 38 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I 117 (254)
T 2c1o_A 38 ELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKI 117 (254)
T ss_dssp CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred ceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEE
Confidence 67777789999999999999999998877 3789999843 221 1135666666667789999
Q ss_pred cCCCCCCCEEEEEEEEcCCeeeE-EEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeec-C-CeEEEEECC
Q psy16852 67 INPTKEDIGVYTCKATNIGGVAT-CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP-T-PSICWYRGK 143 (579)
Q Consensus 67 ~~~~~~d~G~Y~C~~~~~~g~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~-~~i~W~~~~ 143 (579)
.+++.+|+|.|+|.|.|..+... ....+.|.... .+|.+..........+|+.++|.|.+.+.+ + +.+.|++++
T Consensus 118 ~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~---~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g 194 (254)
T 2c1o_A 118 SRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRAD---AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDG 194 (254)
T ss_dssp SSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCC---BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESS
T ss_pred CcCCcccCEEEEEEEEcCcceEecCCEEEEECCCC---CCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECC
Confidence 99999999999999998755322 23456664321 234444333322334688999999998854 4 469999999
Q ss_pred EEccCCCCceEEEcC-CCC----eEEEEECcCCCCCCeEEEEEEEcCCcee
Q psy16852 144 EEILPDNGHTMEFNP-TTG----ECVLSISEATPQDEAVYSVKAVNTFGRA 189 (579)
Q Consensus 144 ~~~~~~~~~~~~~~~-~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (579)
..+............ .++ .+.|.|.++..+|+|.|+|.|.|.....
T Consensus 195 ~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~ 245 (254)
T 2c1o_A 195 SERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 245 (254)
T ss_dssp SEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred CcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence 887654111111000 111 3579999999999999999999986643
No 189
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.84 E-value=2.1e-20 Score=158.52 Aligned_cols=159 Identities=19% Similarity=0.192 Sum_probs=114.9
Q ss_pred EEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEcc----------CCCeEEEEECCCCeEE
Q psy16852 296 VTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMK----------EGKEVTIYQDTDGLCK 365 (579)
Q Consensus 296 ~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~----------~~~~~~~~~~~~~~~~ 365 (579)
..|.+..|..+.|.|.... .+.|.+.|.|++++..+. ...++.+ ..++ .
T Consensus 4 ~~v~~~~G~~v~L~c~~~~-----------------~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~--~~~g--s 62 (176)
T 1hng_A 4 GTVWGALGHGINLNIPNFQ-----------------MTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEI--LANG--D 62 (176)
T ss_dssp EEEEEETTSCEEECCTTCC-----------------CCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEE--CTTS--C
T ss_pred eEEEEEcCCcEEEcCCCCC-----------------cccccccEEEEeCCceeEEEcCCCeecCCCCeEEE--CCCC--c
Confidence 3466778889999884211 112345788888886542 2334433 2233 5
Q ss_pred EEEcccCCCCCEEEEEEEEcCceeE--EEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEee
Q psy16852 366 LAISEVFPENAGLYSCTAVNPVGEA--VAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYR 443 (579)
Q Consensus 366 l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~ 443 (579)
|.|.++..+|+|.|+|.|.|..|.. ...+.|.|...+ ..|.+. ..+..++|.|.+.|.|.|.+.|++
T Consensus 63 L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~---~~p~i~--------~~~~~v~L~C~~~g~p~p~i~W~~ 131 (176)
T 1hng_A 63 LKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMV---SKPMIY--------WECSNATLTCEVLEGTDVELKLYQ 131 (176)
T ss_dssp EEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEECCC---CCCEEE--------EETTTTEEEEECSSCSSCEEEEEE
T ss_pred EEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEeCCC---CCCEEE--------ecCCcEEEEEEecCCCCcEEEEEE
Confidence 9999999999999999999999986 566777776521 233333 235569999999999999999999
Q ss_pred CCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCee
Q psy16852 444 GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523 (579)
Q Consensus 444 ~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 523 (579)
+|..+..+.+ +.|..+..+|+|.|+|.|.|..|.
T Consensus 132 ~g~~l~~~~~----------------------------------------------~~i~~~~~~d~G~Y~C~a~N~~g~ 165 (176)
T 1hng_A 132 GKEHLRSLRQ----------------------------------------------KTMSYQWTNLRAPFKCKAVNRVSQ 165 (176)
T ss_dssp TTEEEEEESS----------------------------------------------SEEEEECSCCSSCEEEEEEETTEE
T ss_pred CCEECCCCCc----------------------------------------------EEEEEEEccCCeEEEEEEEecCCC
Confidence 9988743322 344467789999999999999999
Q ss_pred EEEEEEEEE
Q psy16852 524 VTCTATLSL 532 (579)
Q Consensus 524 ~~~~~~l~v 532 (579)
....+.|.+
T Consensus 166 ~~~~~~l~~ 174 (176)
T 1hng_A 166 ESEMEVVNC 174 (176)
T ss_dssp EEEEECCCC
T ss_pred ceecccccC
Confidence 988877754
No 190
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.84 E-value=3.7e-21 Score=165.28 Aligned_cols=159 Identities=16% Similarity=0.224 Sum_probs=119.0
Q ss_pred CceeeeCCCCEEEEEEEEeeCCCeeEEEECCEE--ecC------------CCCEEEEE---eCCEEEEEEcCCCCCCCEE
Q psy16852 14 QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTE--LHA------------TEHYLITT---VESVSTLEIINPTKEDIGV 76 (579)
Q Consensus 14 ~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~--~~~------------~~~~~~~~---~~~~~~L~i~~~~~~d~G~ 76 (579)
+.+.+.+|++++|.|.+.+.+.+.+.|++++.. +.. ..++.... ..+..+|.|.+++.+|+|.
T Consensus 3 ~~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~ 82 (184)
T 2ny1_B 3 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT 82 (184)
T ss_dssp CEEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred CcEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEE
Confidence 357799999999999998888889999999863 211 11121111 1224669999999999999
Q ss_pred EEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEE
Q psy16852 77 YTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEF 156 (579)
Q Consensus 77 Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 156 (579)
|+|.+.+..+ .+.+.|.... .+....+.+|+.++|.|.+.+.|.+.+.|++++..+. .
T Consensus 83 Y~C~~~~~~~----~~~l~V~~~~----------~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~-------~- 140 (184)
T 2ny1_B 83 YICEVEDQKE----EVQLLVFGLT----------ANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI-------Q- 140 (184)
T ss_dssp EEEEETTEEE----EEEEEEEEEE----------ESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEE-------E-
T ss_pred EEEEEEcCCC----cEEEEEEEec----------CCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCccc-------c-
Confidence 9999987544 4455554211 1223467899999999999888999999999876441 1
Q ss_pred cCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852 157 NPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198 (579)
Q Consensus 157 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~ 198 (579)
....|.|.+++.+|+|.|+|.|.|..+.......+.|.
T Consensus 141 ----~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~ 178 (184)
T 2ny1_B 141 ----GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 178 (184)
T ss_dssp ----ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ----CceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEE
Confidence 12479999999999999999999988887777777665
No 191
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.84 E-value=4e-20 Score=160.49 Aligned_cols=169 Identities=13% Similarity=0.064 Sum_probs=122.4
Q ss_pred CCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 184 (579)
.|.+...+.. .+.+|+.++|.|.+.+ +.+.+.|+|++..+.... ...........|.|.+++.+|+|.|+|.+.|
T Consensus 5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~---~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n 79 (196)
T 3p2t_A 5 KPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDR---QNPLEPKNKARFSIPSMTEDYAGRYRCYYRS 79 (196)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEE---ECCCSSSSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccc---cccccCCceEEEEeccCCcccCceEEEEEeC
Confidence 4555555555 7889999999999987 778999999988664311 1111123457899999999999999999999
Q ss_pred CCcee--EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceE----
Q psy16852 185 TFGRA--ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIE---- 258 (579)
Q Consensus 185 ~~~~~--~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~---- 258 (579)
..+.. .....+.+.. ...+|.+...+.. .+.+|+.++|.|.+.+. ++.+.|+++|..+......
T Consensus 80 ~~g~~~~s~~~~l~V~~--------~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~ 149 (196)
T 3p2t_A 80 PVGWSQPSDPLELVMTG--------AYSKPTLSALPSP-LVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLRSEHG 149 (196)
T ss_dssp TTEEBCCCCCEEEEEEC--------SSCCCEEEEESCS-EECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEEEEEE
T ss_pred CCcccCCCccEEEEecC--------CCCCCEEEeCCcc-eecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeeccccc
Confidence 88732 2233444431 1134555544443 57899999999999874 4589999999876543311
Q ss_pred EeCCeEEEEEcccCCCCCeEEEEEEEcCCe
Q psy16852 259 TKDNVTKLVIKQTTKKTTGKYEIRVVNEAG 288 (579)
Q Consensus 259 ~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g 288 (579)
.......|.|.+++.+|+|.|+|.|.|..+
T Consensus 150 ~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~ 179 (196)
T 3p2t_A 150 AQQHQAEFPMSPVTSVHGGTYRCFSSHGFS 179 (196)
T ss_dssp EEEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred ccCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence 223457899999999999999999999876
No 192
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.84 E-value=6.7e-21 Score=171.25 Aligned_cols=227 Identities=11% Similarity=0.047 Sum_probs=123.6
Q ss_pred cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCE-EEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHY-LITTVESVSTLEIINPTKEDIGVYTCKA 81 (579)
Q Consensus 3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (579)
.+-+|.|...|. ..+.+|++|+|.|.+.+ +.+.|.|||+|..+...... ..........|.|.+++.+|+|.|+|.+
T Consensus 4 ~~~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a 81 (257)
T 1b6u_A 4 VHRKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYG 81 (257)
T ss_dssp -CCCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEE
T ss_pred cCCCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeE
Confidence 355788888786 67999999999999964 45689999998754311000 0000123578999999999999999999
Q ss_pred EcCC-----eeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEE
Q psy16852 82 TNIG-----GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEF 156 (579)
Q Consensus 82 ~~~~-----g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 156 (579)
.+.. ...+..+.|.|.+.. ..|.+...+. ..+.+|+.++|.|.+.+. .+.+.|+|++..+........ .
T Consensus 82 ~~~~~~~~~s~~S~~~~L~V~~~~---~~P~l~~~p~-~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~-~ 155 (257)
T 1b6u_A 82 SVTHSPYQLSAPSDPLDIVITGLY---EKPSLSAQPG-PTVLAGESVTLSCSSRSS-YDMYHLSREGEAHERRFSAGP-K 155 (257)
T ss_dssp ECSSCTTSCCCCCCCEEEEEECSS---CCCEEECSSC-TTCBTTCEEEEEEECSSC-CSEEEEEETTSSCEECCBCBC-C
T ss_pred eccCCCccccccCCCEEEecccCC---CCcceEccCC-CccCCCCEEEEEEeCCCC-CcEEEEEECCcccCccccccc-c
Confidence 8642 123445677776532 2445544433 356899999999998764 469999999876543321111 0
Q ss_pred cCCCCeEEEEECcCCCCCCeEEEEEEEcCCc---eeEEEEEEEEeeccccCCCCccCCCeEeccC-CceeeCCCCeEEEE
Q psy16852 157 NPTTGECVLSISEATPQDEAVYSVKAVNTFG---RAECRANLVLRKATTIDKPRVLEAPTIVRPL-QALLVPKDSTVTLE 232 (579)
Q Consensus 157 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~-~~~~~~~g~~~~l~ 232 (579)
........|.|.+++ |+|.|+|.+.+... ....+..+.+.+ ..+|.+..+. .......|..+.|.
T Consensus 156 ~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V---------~g~p~~~~p~~~~~~~~~g~~~~l~ 224 (257)
T 1b6u_A 156 VNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSV---------TGNPSNSWPSPTEPSSETGNPRHLH 224 (257)
T ss_dssp SSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECC---------BCCC---------------------
T ss_pred cCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEE---------eccCCCCCCCCcccCccCCCeEEEE
Confidence 011125689999998 99999999997532 112222233321 1333332111 12235568899999
Q ss_pred EEEEccCCCeEEEEECC
Q psy16852 233 AEYTGTPTPEVKWFKNG 249 (579)
Q Consensus 233 C~~~~~p~~~v~W~~~~ 249 (579)
|.+ |.+-+.+.|...+
T Consensus 225 ~~~-~~~~~~~~~~~~~ 240 (257)
T 1b6u_A 225 AAA-EQKLISEEDLNLD 240 (257)
T ss_dssp -----------------
T ss_pred EEE-cchHHHHHHhhhh
Confidence 876 5666688887644
No 193
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.84 E-value=3.4e-20 Score=167.96 Aligned_cols=179 Identities=14% Similarity=0.199 Sum_probs=126.5
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC-----EE---------ecCCCCEEEEEeCCEEEEEEcCCCC
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG-----TE---------LHATEHYLITTVESVSTLEIINPTK 71 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g-----~~---------~~~~~~~~~~~~~~~~~L~i~~~~~ 71 (579)
.+.+...|.++.+.+|++++|.|.+.+.+.+.+.|||+. .. .....++.........+|+|.+++.
T Consensus 4 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 83 (250)
T 3esu_F 4 DIVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQ 83 (250)
T ss_dssp CCCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred ceeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCCh
Confidence 355677788999999999999999999888899999953 11 1123566666666778999999999
Q ss_pred CCCEEEEEEEEcCCeeeE-EEEEEEEEecccC-------------CCCCceecCCCceEEccCCcEEEEEEEEeec--CC
Q psy16852 72 EDIGVYTCKATNIGGVAT-CSANLIVLEKEES-------------GEAPKFTKPLKPVIAEAQSPATLKATVTGRP--TP 135 (579)
Q Consensus 72 ~d~G~Y~C~~~~~~g~~~-~~~~~~v~~~~~~-------------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~ 135 (579)
+|+|.|+|.+.|..+... ....+.|...+.. ..++.....+....+.+|+.++|.|.+.+.+ .+
T Consensus 84 ~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~ 163 (250)
T 3esu_F 84 EDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSS 163 (250)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGS
T ss_pred hhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCC
Confidence 999999999988655322 3345666542100 0122233345567789999999999998766 68
Q ss_pred eEEEEEC--CEEcc-----------------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852 136 SICWYRG--KEEIL-----------------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184 (579)
Q Consensus 136 ~i~W~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 184 (579)
.+.||++ +..+. ...++.+..+......+|.|.+++.+|+|.|+|.+.+
T Consensus 164 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 164 WMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp EEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred EEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence 9999996 32210 0123334333334567899999999999999999997
No 194
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.84 E-value=2.9e-19 Score=153.47 Aligned_cols=161 Identities=14% Similarity=0.242 Sum_probs=121.7
Q ss_pred eEEccCCcEEEEEEEEeecCC--eEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEE
Q psy16852 115 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECR 192 (579)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 192 (579)
..+.+|+.++|.|.+.+.|.+ .+.|++++..+...... .....|.|. +.+|+|.|+|.+.+... ..
T Consensus 8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~-------~~~~~l~i~--~~~d~G~Y~C~~~n~~~---~~ 75 (184)
T 3b5h_A 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-------GQKTEFKVD--SDDQWGEYSCVFLPEPM---GT 75 (184)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-------CSEEEEEEC--GGGCCEEEEEEEESTTS---CE
T ss_pred EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc-------CCcEEEEEe--chhhCeEEEEEEECCcC---cE
Confidence 456789999999999887776 99999999887654322 123456666 68899999999998322 33
Q ss_pred EEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccC-CCeEEEEE---CCE-EeccCc-----eEEeCC
Q psy16852 193 ANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTP-TPEVKWFK---NGK-EIVSKD-----IETKDN 262 (579)
Q Consensus 193 ~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~---~~~-~i~~~~-----~~~~~~ 262 (579)
..+.+. .+|.+...+....+.+|+.+.|.|.+.+.| .+.+.|++ ++. .+.... ......
T Consensus 76 ~~l~V~-----------~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (184)
T 3b5h_A 76 ANIQLH-----------GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQG 144 (184)
T ss_dssp EEEEEC-----------CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETT
T ss_pred EEEEEe-----------cCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCC
Confidence 444443 456666666666789999999999999998 78999999 444 443221 223345
Q ss_pred eEEEEEcccC-CCCCeEEEEEEEcCCeeeEEEEEEEE
Q psy16852 263 VTKLVIKQTT-KKTTGKYEIRVVNEAGEARTSGSVTI 298 (579)
Q Consensus 263 ~~~l~i~~~~-~~d~G~y~C~a~n~~g~~~~~~~~~v 298 (579)
...|.|.++. .+|+|.|+|.|.|..|.....+.|.|
T Consensus 145 ~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V 181 (184)
T 3b5h_A 145 RSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181 (184)
T ss_dssp EEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEE
T ss_pred eeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEE
Confidence 6789999999 89999999999999998887766665
No 195
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.84 E-value=1e-19 Score=158.09 Aligned_cols=159 Identities=14% Similarity=0.188 Sum_probs=112.5
Q ss_pred eEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEE
Q psy16852 115 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRAN 194 (579)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 194 (579)
+.+.+|+.++|.|.+.|.|.+.|.|++...... .. .... ......|.|.+++.+|+|.|+|.+.|..+.......
T Consensus 11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~--~~-~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~ 85 (202)
T 1vca_A 11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL--NG-KVTN--EGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQ 85 (202)
T ss_dssp EEEETTSCEEEEEEEESCSSCEEEEEETTCCCC--SS-EEEE--ETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEE
T ss_pred EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCc--cc-eEEE--cCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEE
Confidence 445589999999999999999999998432111 11 1111 123567999999999999999999999877666666
Q ss_pred EEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CC--CeEEEEECCEEeccCceEE-------eCCeE
Q psy16852 195 LVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PT--PEVKWFKNGKEIVSKDIET-------KDNVT 264 (579)
Q Consensus 195 ~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--~~v~W~~~~~~i~~~~~~~-------~~~~~ 264 (579)
+.|.... ..+.+.. . ..+.+|+.++|.|.+.+. |. +.+.|++++..+....... .....
T Consensus 86 l~V~~~p--------~~~~~~~--~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~ 154 (202)
T 1vca_A 86 VEIYSFP--------KDPEIHL--S-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSL 154 (202)
T ss_dssp EEEEBCC--------SCCEEEE--S-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEE
T ss_pred EEEEeCC--------CCCEeCC--c-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEE
Confidence 6654210 1122221 2 457899999999999875 43 3799999999875432110 12234
Q ss_pred EEEEcccCCCCCeEEEEEEEcCCee
Q psy16852 265 KLVIKQTTKKTTGKYEIRVVNEAGE 289 (579)
Q Consensus 265 ~l~i~~~~~~d~G~y~C~a~n~~g~ 289 (579)
.|.|.....+|.|.|+|+|.|..+.
T Consensus 155 ~l~i~~~~~d~~g~ytC~A~n~~~~ 179 (202)
T 1vca_A 155 EVTFTPVIEDIGKVLVCRAKLHIDE 179 (202)
T ss_dssp EEEECCCGGGTTCEEEEEEEECSCC
T ss_pred EEEEEeeeccCCCeEEEEEEccccC
Confidence 5678888889999999999998775
No 196
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.84 E-value=9.9e-20 Score=162.03 Aligned_cols=187 Identities=20% Similarity=0.229 Sum_probs=125.4
Q ss_pred EEeccceeeeeeeeeeccccC---ceeeeecCeeEEEeeeCCCeEEEEECCEEccCC------CeEEEEEC--CCCeEEE
Q psy16852 298 ITVAEAETVMMDVRVESHPTA---SFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEG------KEVTIYQD--TDGLCKL 366 (579)
Q Consensus 298 v~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~------~~~~~~~~--~~~~~~l 366 (579)
|.+..|+.+.|.|.+...+.. .+.|+. +.+.+.+.|+++|+.+... .+...... ..+...|
T Consensus 14 V~v~~G~~v~L~C~v~~~~~~~~~~V~W~k--------~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L 85 (226)
T 4f80_A 14 ILAMVGEDADLPCHLFPTMSAETMELKWVS--------SSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAAL 85 (226)
T ss_dssp EEEETTSCEEEEEEEESCCCCTTSEEEEEE--------TTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEE
T ss_pred EEEEcCCcEEEEEEEECCCCCCceEEEEEE--------CCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEE
Confidence 446788999999987654433 577753 3455677888888765432 22222221 2346789
Q ss_pred EEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEe-eCCCeEEEeeCC
Q psy16852 367 AISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTPSICWYRGK 445 (579)
Q Consensus 367 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~~v~W~~~~ 445 (579)
.|.+++.+|+|.|+|.|.|..|.....+.+.+.. ..........+.+|+.+.|.|.+.| .|.|+|+|++++
T Consensus 86 ~I~~v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~--------~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~ 157 (226)
T 4f80_A 86 RIHNVTASDSGKYLCYFQDGDFYEKALVELKVAA--------LGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNK 157 (226)
T ss_dssp EESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEB--------CCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTT
T ss_pred EEeeCchHHCeeEEEEEECCCcEEEEEEEEeecc--------ceecccceeeeccCCceeeEEEeccCCCCCEEEEEECC
Confidence 9999999999999999999988877666555543 1222233456788999999999988 599999999976
Q ss_pred EEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEE
Q psy16852 446 EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525 (579)
Q Consensus 446 ~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 525 (579)
..+.......+.. .. ++....+.+..++.+|+|.|+|.|.|..|...
T Consensus 158 ~~~~~~~~~~~~~----------------~~-----------------~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~ 204 (226)
T 4f80_A 158 GENIPTVEAPVVA----------------DG-----------------VGLYAVAASVIMRGSSGEGVSCTIRSSLLGLE 204 (226)
T ss_dssp SCBCCCEECCCEE----------------CT-----------------TSCEEEEEEEEECC----CEEEEEEETTTTEE
T ss_pred ceEcCCCceEEEE----------------CC-----------------CCcEEEEEEEEechhcCcEEEEEEEeCCCCeE
Confidence 5443332221111 11 12223355667788999999999999999999
Q ss_pred EEEEEEEe
Q psy16852 526 CTATLSLL 533 (579)
Q Consensus 526 ~~~~l~v~ 533 (579)
.++.|.|.
T Consensus 205 ~~~~v~v~ 212 (226)
T 4f80_A 205 KTASISIA 212 (226)
T ss_dssp EEEEECCC
T ss_pred EEEEEEEC
Confidence 99988864
No 197
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.84 E-value=1.9e-21 Score=171.16 Aligned_cols=181 Identities=18% Similarity=0.276 Sum_probs=129.4
Q ss_pred CceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEc----------cCCCCceEEEcCCCCeEEEEECcCCCCCC
Q psy16852 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEI----------LPDNGHTMEFNPTTGECVLSISEATPQDE 175 (579)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 175 (579)
..+...+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+ ......++.... ..|.|.+++.+|+
T Consensus 5 ~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~~~~~d~ 80 (209)
T 1nbq_A 5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP----TGITFKSVTREDT 80 (209)
T ss_dssp CEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET----TEEECSCCCTTSC
T ss_pred EEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec----cEEEEeeCCHHHC
Confidence 34555667778899999999999998899999999976542 111111122211 5799999999999
Q ss_pred eEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEE-EccCCCeEEEEECCEEecc
Q psy16852 176 AVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEY-TGTPTPEVKWFKNGKEIVS 254 (579)
Q Consensus 176 G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~i~~ 254 (579)
|.|+|.+.+..|....+..+.+.+ ..+|.+........+.+|+.+.|.|.+ .+.|.+.+.|++++..+..
T Consensus 81 G~Y~C~~~~~~g~~~~~~~~~l~V---------~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~ 151 (209)
T 1nbq_A 81 GTYTCMVSEEGGNSYGEVKVKLIV---------LVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPT 151 (209)
T ss_dssp SEEEEEEEETTSSCEECCEEECCE---------EBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCS
T ss_pred cEEEEEEecCCCCccceEEEEEEE---------ecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCC
Confidence 999999999866333333333322 133333333334457889999999996 7899999999999988765
Q ss_pred Cc----------eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 255 KD----------IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299 (579)
Q Consensus 255 ~~----------~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~ 299 (579)
.. .........|.|.++..+|+|.|+|.|.|..|....+..+.|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~ 206 (209)
T 1nbq_A 152 NPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 206 (209)
T ss_dssp CSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCE
T ss_pred ccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEE
Confidence 43 1112245689999999999999999999999987555444443
No 198
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.84 E-value=5.6e-20 Score=160.57 Aligned_cols=177 Identities=14% Similarity=0.142 Sum_probs=125.2
Q ss_pred cCCCceEEccCCcEEEEEEEEeecC-----CeEEEEECCEEc-cCCCCceEEEc-CCCCeEEEEECcCCCCCCeEEEEEE
Q psy16852 110 KPLKPVIAEAQSPATLKATVTGRPT-----PSICWYRGKEEI-LPDNGHTMEFN-PTTGECVLSISEATPQDEAVYSVKA 182 (579)
Q Consensus 110 ~~~~~~~~~~g~~~~l~C~~~~~p~-----~~i~W~~~~~~~-~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~ 182 (579)
.++.++.+.+|+.+.|.|.+.+.|. +.+.|++.+... ....+..+..+ ...+..+|.|.+++.+|+|.|+|.+
T Consensus 7 ~p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 86 (202)
T 3bp6_B 7 APKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLV 86 (202)
T ss_dssp CSCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred cCCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEE
Confidence 3455678899999999999988775 799999944433 22333332211 1225679999999999999999999
Q ss_pred EcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEE-eC
Q psy16852 183 VNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIET-KD 261 (579)
Q Consensus 183 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~-~~ 261 (579)
.+..+.......+.+... ...|.+.. ..+.+|+.+.|.|.+.|.|.+.+.|++++..+....... ..
T Consensus 87 ~~~~~~~~~~~~l~V~~~--------~~~p~~~~----~~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~ 154 (202)
T 3bp6_B 87 ICGAAWDYKYLTVKVKAS--------YMRIDTRI----LEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPEG 154 (202)
T ss_dssp EETTEEEEEEEEEEEEBC--------CCCEEEEE----EECTTTCCEEEEEEEEEBSCCEEEETTCCSCCEEEEEECTTS
T ss_pred EeCCCcceEEEEEEecCC--------CCcccEEE----EecCCCCeEEEEEEccccCCceEEEEeCCCCccCceeeCCCC
Confidence 999887666666665421 01222211 245689999999999999999999999887553321111 12
Q ss_pred CeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEE
Q psy16852 262 NVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298 (579)
Q Consensus 262 ~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v 298 (579)
....+.+..+..+|.|.|+|.|.|..|.....+.+.|
T Consensus 155 ~~~~~~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~v 191 (202)
T 3bp6_B 155 LYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDP 191 (202)
T ss_dssp CEEEEEEEEECCCTTCCEEEEEEETTTTEEEEEEECC
T ss_pred CEEEEEEEEEEcCCCCEEEEEEEcCCcccccEEEEEe
Confidence 2356778889999999999999999998877766554
No 199
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.83 E-value=4.1e-21 Score=164.70 Aligned_cols=151 Identities=17% Similarity=0.246 Sum_probs=111.1
Q ss_pred eeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcC-CCCCCCEEEEEEEEcCCeeeEEEEEE
Q psy16852 16 VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIIN-PTKEDIGVYTCKATNIGGVATCSANL 94 (579)
Q Consensus 16 ~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~-~~~~d~G~Y~C~~~~~~g~~~~~~~~ 94 (579)
..+.+|++++|.|.+.+ +. .|+|+|+|..+.... ..+|.|.+ ++.+|+|.|+|.|.|..|.......+
T Consensus 9 ~v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~~---------~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~ 77 (186)
T 1jbj_A 9 KVSISGTSVELTCPLDS-DE-NLKWEKNGQELPQKH---------DKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKA 77 (186)
T ss_dssp EEEEETTEEEEECSSCC-CT-TCEEEETTEEECSCC---------CSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECC
T ss_pred EEEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCCC---------CCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEE
Confidence 34578999999999977 44 599999999987642 24799999 99999999999999988875555555
Q ss_pred EEEecccCCC------------CCceecC----CCc---eEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEE
Q psy16852 95 IVLEKEESGE------------APKFTKP----LKP---VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTME 155 (579)
Q Consensus 95 ~v~~~~~~~~------------~~~~~~~----~~~---~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~ 155 (579)
.|.....+.. ++.+... ... ..+.+|+.+.|.|.+ |.+.|.|+|++..+.....
T Consensus 78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~---- 150 (186)
T 1jbj_A 78 RVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA---- 150 (186)
T ss_dssp CCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC----
T ss_pred EEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC----
Confidence 5443221110 0000000 001 123489999999987 8899999999998764322
Q ss_pred EcCCCCeEEEEECcCCCCCCeEEEEEEEcCCcee
Q psy16852 156 FNPTTGECVLSISEATPQDEAVYSVKAVNTFGRA 189 (579)
Q Consensus 156 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (579)
....|.|.++..+|+|.|+|.|.|..|..
T Consensus 151 -----~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 151 -----TKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp -----CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred -----CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 23469999999999999999999988765
No 200
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.83 E-value=8.7e-20 Score=155.07 Aligned_cols=154 Identities=15% Similarity=0.155 Sum_probs=117.6
Q ss_pred CCceecCCCceEEccCCcEEEEEEEEeecCCe-EEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEE
Q psy16852 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPS-ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAV 183 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 183 (579)
.|.+...+....+.+|+.++|.|.+.+.|.+. +.|++++..+... ...|.|.+++.+|+|.|+|.+.
T Consensus 7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~------------~~~L~i~~~~~~d~G~Y~C~~~ 74 (175)
T 1fnl_A 7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ------------ASSYFIDAATVNDSGEYRCQTN 74 (175)
T ss_dssp CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS------------CSEEEESSCCGGGCEEEEEECS
T ss_pred CCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCC------------ceEEEEeCCCcccCEEEEEEee
Confidence 45566666667888999999999998887765 8999999877532 2479999999999999999998
Q ss_pred cCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCC-eEEEEECCEEeccCceEEeCC
Q psy16852 184 NTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP-EVKWFKNGKEIVSKDIETKDN 262 (579)
Q Consensus 184 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~i~~~~~~~~~~ 262 (579)
+..+.. ...+.+. .++..... ....+.+|+.+.|.|.+.+.+++ .+.|+++|..+... ..
T Consensus 75 n~~~s~--~~~l~V~-----------~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~-----~~ 135 (175)
T 1fnl_A 75 LSTLSD--PVQLEVH-----------IGWLLLQA-PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF-----HH 135 (175)
T ss_dssp SSCCCC--CEEEEEE-----------CSSEEEEC-SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE-----EE
T ss_pred CCcccc--cEEEEEe-----------CCCceeeC-CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC-----CC
Confidence 865533 3334433 22223322 33457889999999999887665 99999999987432 23
Q ss_pred eEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852 263 VTKLVIKQTTKKTTGKYEIRVVNEAGE 289 (579)
Q Consensus 263 ~~~l~i~~~~~~d~G~y~C~a~n~~g~ 289 (579)
...|.|.+++.+|+|.|+|.|.|..+.
T Consensus 136 ~~~L~i~~v~~~d~G~Y~C~a~n~~~~ 162 (175)
T 1fnl_A 136 NSDFHIPKATLKDSGSYFCRGLVGSKN 162 (175)
T ss_dssp CCCEEESSCCGGGCEEEEEEEEETTEE
T ss_pred CCEEEEcccChhhCeEEEEEEEcCCCC
Confidence 457999999999999999999997654
No 201
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.83 E-value=2.2e-20 Score=167.86 Aligned_cols=178 Identities=18% Similarity=0.294 Sum_probs=123.3
Q ss_pred ccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEEe---------------cCCCCEEEEE-eCCEEEEEEcCC
Q psy16852 8 RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTEL---------------HATEHYLITT-VESVSTLEIINP 69 (579)
Q Consensus 8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~~---------------~~~~~~~~~~-~~~~~~L~i~~~ 69 (579)
.+...|.++.+.+|++++|.|. .+.+.+.+.|||+ +... ....++.+.. .....+|+|.++
T Consensus 2 ~v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v 80 (238)
T 2p1y_A 2 AVTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELA 80 (238)
T ss_dssp CEEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSC
T ss_pred cceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecC
Confidence 4667789999999999999999 6778889999995 2111 0123444432 224568999999
Q ss_pred CCCCCEEEEEEEEcCCee-----eEEEEEEEEEecccCCC------CCceecCCCceEEccCCcEEEEEEEEeecCCeEE
Q psy16852 70 TKEDIGVYTCKATNIGGV-----ATCSANLIVLEKEESGE------APKFTKPLKPVIAEAQSPATLKATVTGRPTPSIC 138 (579)
Q Consensus 70 ~~~d~G~Y~C~~~~~~g~-----~~~~~~~~v~~~~~~~~------~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~ 138 (579)
+.+|+|.|+|.+.+..|. ......+.|...+.... .+.+...+....+.+|+.++|.|.+.+.|.+.+.
T Consensus 81 ~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~ 160 (238)
T 2p1y_A 81 TPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFP 160 (238)
T ss_dssp CGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEE
T ss_pred CcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEE
Confidence 999999999999987542 11234666654321000 0134445666788999999999999988889999
Q ss_pred EEECCE-----Ecc---------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852 139 WYRGKE-----EIL---------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF 186 (579)
Q Consensus 139 W~~~~~-----~~~---------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 186 (579)
||+++. .+. ...++.+..+...+..+|.|.+++.+|+|.|+|.+.|..
T Consensus 161 W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 161 WYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN 222 (238)
T ss_dssp EEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred EEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence 999641 110 122333333344556899999999999999999999874
No 202
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.83 E-value=3.2e-20 Score=163.99 Aligned_cols=178 Identities=13% Similarity=0.125 Sum_probs=121.3
Q ss_pred cccccCceeeeCCCCEEEEEEE-EeeC-CCeeEEEECC--EEe------------cCCCCEEEEEeCCEEEEEEcCCCCC
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKV-EGHP-LPTMTWQKDG--TEL------------HATEHYLITTVESVSTLEIINPTKE 72 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~-~~~~-~~~v~W~~~g--~~~------------~~~~~~~~~~~~~~~~L~i~~~~~~ 72 (579)
|.. |.++.+.+|++++|.|.+ .+.+ .+.+.|||++ ..+ ....++.........+|.|.+++.+
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 82 (216)
T 2xzc_L 4 LTQ-PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTG 82 (216)
T ss_dssp BBC-CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGG
T ss_pred EEC-CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcc
Confidence 444 788999999999999995 4332 4689999954 211 1134666665667789999999999
Q ss_pred CCEEEEEEEEcCCe--eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cCC-eEEEEECCEEccC
Q psy16852 73 DIGVYTCKATNIGG--VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP-SICWYRGKEEILP 148 (579)
Q Consensus 73 d~G~Y~C~~~~~~g--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~~ 148 (579)
|+|.|+|.+.+..+ .......+.|... ..+|.+...........|+.++|.|.+.+. |++ .|.|++++..+..
T Consensus 83 D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~---~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~ 159 (216)
T 2xzc_L 83 DEADYYCGTWDSSLNPVFGGGTKLEIKRT---VAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSG 159 (216)
T ss_dssp GCEEEEEEEECTTSCEEEBCCEEEEECCC---CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCS
T ss_pred cCEEEEEEEEeCCCcceECCCEEEEEcCC---CCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCC
Confidence 99999999998775 2223456666432 124444432222223468899999999884 443 9999999998764
Q ss_pred CCCceEEE-cCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeE
Q psy16852 149 DNGHTMEF-NPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAE 190 (579)
Q Consensus 149 ~~~~~~~~-~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 190 (579)
........ ...++ .+.|.|..+..+|+|.|+|.|.|......
T Consensus 160 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~ 206 (216)
T 2xzc_L 160 NSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP 206 (216)
T ss_dssp SEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred CeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCc
Confidence 41111100 11112 23799999999999999999999865443
No 203
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.83 E-value=2e-20 Score=167.48 Aligned_cols=172 Identities=17% Similarity=0.237 Sum_probs=126.2
Q ss_pred ccccCceeeeCCCCEEEEEEEEeeCC-CeeEEEECCEEec---------CCCCE--EEE----------EeCCEEEEEEc
Q psy16852 10 IEKIQPVVSHQEQPALFTCKVEGHPL-PTMTWQKDGTELH---------ATEHY--LIT----------TVESVSTLEII 67 (579)
Q Consensus 10 ~~~p~~~~v~~G~~~~l~C~~~~~~~-~~v~W~~~g~~~~---------~~~~~--~~~----------~~~~~~~L~i~ 67 (579)
+..|.++.+.+|++++|.|.+.+.+. +.+.|++++.... ....+ +.. .. ....|.|.
T Consensus 4 v~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~L~i~ 82 (231)
T 2pet_A 4 LSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLD-SQGRLVLA 82 (231)
T ss_dssp CCCCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEEC-TTCCEEES
T ss_pred ccCCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccC-CCceEEEc
Confidence 45688899999999999999988874 7999998654311 11111 111 22 22349999
Q ss_pred CCCCCCCEEEEEEEEcCC-eeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcE-EEEEEE-EeecCCeEEEEECCE
Q psy16852 68 NPTKEDIGVYTCKATNIG-GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPA-TLKATV-TGRPTPSICWYRGKE 144 (579)
Q Consensus 68 ~~~~~d~G~Y~C~~~~~~-g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~-~l~C~~-~~~p~~~i~W~~~~~ 144 (579)
+++.+|+|.|+|.+.+.. +.....+.+.|...+ ..|.+...+....+.+|+.+ .|.|.+ .+.|.+.+.|++++.
T Consensus 83 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p---~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~ 159 (231)
T 2pet_A 83 EAQVGDERDYVCVVRAGAAGTAEATARLNVFAKP---EATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQ 159 (231)
T ss_dssp SCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCC---CCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTE
T ss_pred ccCcccCceEEEEEEecCCCceEEEEEEEEEecC---CCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCc
Confidence 999999999999999886 777778888888654 23555555666667789988 999999 899999999999999
Q ss_pred EccCCC----CceEEEc---CCCC----eEEEEECcCCCCCCeEEEEEEEcC
Q psy16852 145 EILPDN----GHTMEFN---PTTG----ECVLSISEATPQDEAVYSVKAVNT 185 (579)
Q Consensus 145 ~~~~~~----~~~~~~~---~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~ 185 (579)
.+.... +..+... ...+ .+.|.|.....+|.|.|+|.|.|.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~ 211 (231)
T 2pet_A 160 RLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS 211 (231)
T ss_dssp ECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred cCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence 887654 2222211 1111 156888766666799999999984
No 204
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.83 E-value=4.3e-20 Score=167.68 Aligned_cols=176 Identities=19% Similarity=0.253 Sum_probs=122.7
Q ss_pred cccCceeeeCCCCEEEEEEEEeeC--CCeeEEEEC--CEE---ec-------------CCCCEEEEEe--CCEEEEEEcC
Q psy16852 11 EKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKD--GTE---LH-------------ATEHYLITTV--ESVSTLEIIN 68 (579)
Q Consensus 11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~--g~~---~~-------------~~~~~~~~~~--~~~~~L~i~~ 68 (579)
.+|.++.+.+|++++|.|.+.+.| .+.+.|||+ +.. +. ...++.+... ....+|+|.+
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 84 (257)
T 1f3r_B 5 LESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNS 84 (257)
T ss_dssp EEECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEES
T ss_pred ECCCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECC
Confidence 456778899999999999998875 578999995 221 10 1345655543 4578999999
Q ss_pred CCCCCCEEEEEEEEcCCe-------ee--EEEEEEEEEecccC---------CCCCceecCCCceEEccCCcEEEEEEEE
Q psy16852 69 PTKEDIGVYTCKATNIGG-------VA--TCSANLIVLEKEES---------GEAPKFTKPLKPVIAEAQSPATLKATVT 130 (579)
Q Consensus 69 ~~~~d~G~Y~C~~~~~~g-------~~--~~~~~~~v~~~~~~---------~~~~~~~~~~~~~~~~~g~~~~l~C~~~ 130 (579)
++.+|+|.|+|.+.+..| .. ...+.|.|...+.. ..++.+...+..+.+.+|+.++|.|.+.
T Consensus 85 v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~ 164 (257)
T 1f3r_B 85 LQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGS 164 (257)
T ss_dssp CCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECS
T ss_pred CCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEEC
Confidence 999999999999998743 11 13456777643210 0112233345566788999999999998
Q ss_pred eecCCeEEEEE--CCEEcc----------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852 131 GRPTPSICWYR--GKEEIL----------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF 186 (579)
Q Consensus 131 ~~p~~~i~W~~--~~~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 186 (579)
+.|.+.+.||+ ++..+. .....++.........+|.|.+++.+|+|.|+|.+.|..
T Consensus 165 ~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 232 (257)
T 1f3r_B 165 QNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNG 232 (257)
T ss_dssp SCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred CcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCC
Confidence 88888999999 444321 000112222222455789999999999999999999864
No 205
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.1e-19 Score=165.25 Aligned_cols=177 Identities=16% Similarity=0.226 Sum_probs=123.7
Q ss_pred cccccCceeeeCCCCEEEEEEEEee--CCCeeEEEECC--EE---e---------cCCCCEEEEEeCCEEEEEEcCCCCC
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEGH--PLPTMTWQKDG--TE---L---------HATEHYLITTVESVSTLEIINPTKE 72 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~~--~~~~v~W~~~g--~~---~---------~~~~~~~~~~~~~~~~L~i~~~~~~ 72 (579)
.+..|..+.+.+|++++|.|.+.+. +.+.+.|||++ .. + ....++.........+|.|.+++.+
T Consensus 5 ~v~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 84 (256)
T 3ux9_B 5 VLTQPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSE 84 (256)
T ss_dssp CCBCCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGG
T ss_pred eEecCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChh
Confidence 3445677999999999999999876 66799999942 11 1 1234666666667789999999999
Q ss_pred CCEEEEEEEEcCCe---eeEEEEEEEEEecccCCC---------------CCceecCCCceEEccCCcEEEEEEEEeec-
Q psy16852 73 DIGVYTCKATNIGG---VATCSANLIVLEKEESGE---------------APKFTKPLKPVIAEAQSPATLKATVTGRP- 133 (579)
Q Consensus 73 d~G~Y~C~~~~~~g---~~~~~~~~~v~~~~~~~~---------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~p- 133 (579)
|+|.|+|.+.+..+ .....+.|.|...+.... .+.+. .+....+.+|+.++|.|.+.+.+
T Consensus 85 DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~G~~v~L~C~~~~~~~ 163 (256)
T 3ux9_B 85 DEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLV-ESGGGLVQPGGSLRLSCAASGFTF 163 (256)
T ss_dssp GCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEE-EECCEEECTTCCEEEEEEEESSCG
T ss_pred hCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEE-cCCCeEEcCCCeEEEEEEEeCCcc
Confidence 99999999998643 222346677765431100 11222 23445688999999999998766
Q ss_pred -CCeEEEEECC--EEc------cC-----------CCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852 134 -TPSICWYRGK--EEI------LP-----------DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF 186 (579)
Q Consensus 134 -~~~i~W~~~~--~~~------~~-----------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 186 (579)
.+.+.||++. ..+ .. ..++.+..+......+|.|.+++.+|+|.|+|.+.+..
T Consensus 164 ~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 236 (256)
T 3ux9_B 164 SSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF 236 (256)
T ss_dssp GGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred cccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence 6899999862 211 11 12444444444567789999999999999999999863
No 206
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.83 E-value=3.3e-20 Score=161.62 Aligned_cols=174 Identities=12% Similarity=0.086 Sum_probs=119.5
Q ss_pred cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCE-EEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHY-LITTVESVSTLEIINPTKEDIGVYTCKA 81 (579)
Q Consensus 3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (579)
.+-+|.|...|. ..+.+|++++|.|.+.+ +.+.+.|||+|..+...... ..........|.|.+++.+|+|.|+|.+
T Consensus 5 ~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a 82 (201)
T 1nkr_A 5 VHRKPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYG 82 (201)
T ss_dssp --CCCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred cCCCCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeE
Confidence 345777877776 77999999999999964 66799999999765321100 0011123478999999999999999999
Q ss_pred EcCC-----eeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEE
Q psy16852 82 TNIG-----GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEF 156 (579)
Q Consensus 82 ~~~~-----g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 156 (579)
.+.. ...+..+.|.|.+.. .+|.+...+. ..+.+|+.++|.|.+.+ +.+.+.|+|++..+..........
T Consensus 83 ~~~~~~~~~~~~s~~~~l~V~~~~---~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~ 157 (201)
T 1nkr_A 83 SVTHSPYQVSAPSDPLDIVIIGLY---EKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKV 157 (201)
T ss_dssp EBTTBTTCCCCCCCCEEEEEECSS---CCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEE
T ss_pred ecCCCCccccCCCCCEEEEeeccC---CCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCccccccccc
Confidence 8643 123345667776532 2445544443 36789999999999875 568999999987654321111111
Q ss_pred cCCCCeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852 157 NPTTGECVLSISEATPQDEAVYSVKAVNTF 186 (579)
Q Consensus 157 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 186 (579)
.......|.|.+++ |+|.|+|.+.+..
T Consensus 158 -~~~~~~~L~i~~v~--d~G~Y~C~a~~~~ 184 (201)
T 1nkr_A 158 -NGTFQADFPLGPAT--HGGTYRCFGSFHD 184 (201)
T ss_dssp -TTEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred -CCceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence 11124689999998 9999999998653
No 207
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.83 E-value=1.1e-19 Score=164.33 Aligned_cols=179 Identities=14% Similarity=0.181 Sum_probs=124.5
Q ss_pred CccccccCceeeeCCCCEEEEEEEEeeC-----CCeeEEEECC--EE---ec---------CCCCEEEEEeCCEEEEEEc
Q psy16852 7 PRFIEKIQPVVSHQEQPALFTCKVEGHP-----LPTMTWQKDG--TE---LH---------ATEHYLITTVESVSTLEII 67 (579)
Q Consensus 7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~-----~~~v~W~~~g--~~---~~---------~~~~~~~~~~~~~~~L~i~ 67 (579)
..+...|.++.+.+|++++|.|.+.+.+ .+.+.|||++ .. +. ...++.........+|+|.
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 81 (247)
T 1svz_A 2 ILMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKIS 81 (247)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred CcEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEEC
Confidence 3566778999999999999999998877 5789999942 21 11 1356666666677899999
Q ss_pred CCCCCCCEEEEEEEEcCCeee-EEEEEEEEEecccC-------CCCCceecCCCceEEccCCcEEEEEEEEeec--CCeE
Q psy16852 68 NPTKEDIGVYTCKATNIGGVA-TCSANLIVLEKEES-------GEAPKFTKPLKPVIAEAQSPATLKATVTGRP--TPSI 137 (579)
Q Consensus 68 ~~~~~d~G~Y~C~~~~~~g~~-~~~~~~~v~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i 137 (579)
+++.+|+|.|+|.+.+..+.. ...+.|.|...+.. ..++.....+....+.+|+.++|.|.+.+.+ .+.+
T Consensus 82 ~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v 161 (247)
T 1svz_A 82 RVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSM 161 (247)
T ss_dssp SCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCE
T ss_pred CCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEE
Confidence 999999999999998875432 23456777543210 0012222333445689999999999998764 5799
Q ss_pred EEEECC--EEc------cC-----------CCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcC
Q psy16852 138 CWYRGK--EEI------LP-----------DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNT 185 (579)
Q Consensus 138 ~W~~~~--~~~------~~-----------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 185 (579)
.||++. ..+ .. ..+..+..+...+..+|.|.+++.+|+|.|+|.+.|.
T Consensus 162 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 162 HWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp EEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred EEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence 999963 111 00 2233333333445679999999999999999999885
No 208
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.83 E-value=2.1e-19 Score=163.50 Aligned_cols=180 Identities=14% Similarity=0.197 Sum_probs=127.1
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeC------CCeeEEEEC--CEE---ec---------CCCCEEEEEeCCEEEEE
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHP------LPTMTWQKD--GTE---LH---------ATEHYLITTVESVSTLE 65 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~------~~~v~W~~~--g~~---~~---------~~~~~~~~~~~~~~~L~ 65 (579)
.+.+...|..+.+.+|++++|.|.+.+.+ .+.+.|||+ |.. +. ...++.........+|+
T Consensus 5 ~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~ 84 (264)
T 2gjj_A 5 DIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLT 84 (264)
T ss_dssp CCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred ccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEE
Confidence 46677889999999999999999998776 568999995 221 11 13566666556678999
Q ss_pred EcCCCCCCCEEEEEEEEcCCee-eEEEEEEEEEecccC------------C-CCCceecCCCceEEccCCcEEEEEEEEe
Q psy16852 66 IINPTKEDIGVYTCKATNIGGV-ATCSANLIVLEKEES------------G-EAPKFTKPLKPVIAEAQSPATLKATVTG 131 (579)
Q Consensus 66 i~~~~~~d~G~Y~C~~~~~~g~-~~~~~~~~v~~~~~~------------~-~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 131 (579)
|.+++.+|+|.|+|.+.+..+. ....+.|.|...+.. . .+......+....+.+|+.++|.|.+.+
T Consensus 85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~ 164 (264)
T 2gjj_A 85 IGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASG 164 (264)
T ss_dssp ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEES
T ss_pred ECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeC
Confidence 9999999999999999886542 223456777654210 0 0111122233457889999999999987
Q ss_pred ecC--CeEEEEECC--E---Ecc---C-----------CCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcC
Q psy16852 132 RPT--PSICWYRGK--E---EIL---P-----------DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNT 185 (579)
Q Consensus 132 ~p~--~~i~W~~~~--~---~~~---~-----------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 185 (579)
.+. +.+.||++. . .+. . ..+..+..+......+|.|.+++.+|+|.|+|.+.|.
T Consensus 165 ~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 165 YSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN 239 (264)
T ss_dssp SCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred CccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence 764 799999963 1 111 0 1233344444456789999999999999999999985
No 209
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=99.83 E-value=8e-18 Score=176.78 Aligned_cols=451 Identities=14% Similarity=0.126 Sum_probs=249.9
Q ss_pred CCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCC-CCEEEEEEEEcCCeeeEEEEEEEEEe
Q psy16852 20 QEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKE-DIGVYTCKATNIGGVATCSANLIVLE 98 (579)
Q Consensus 20 ~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~~~~~~g~~~~~~~~~v~~ 98 (579)
.+..+.|.|.+.|.|.+.+.|.++|..+..-. ...+.|..+... ..+.|.|.+.+..|..... .+.+..
T Consensus 90 ~~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~---------~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~-~v~~~~ 159 (731)
T 2v5y_A 90 PPGLLNVYVKVNNGPLGNPIWNISGDPTRTWN---------RAELAISTFWPNFYQVIFEVITSGHQGYLAID-EVKVLG 159 (731)
T ss_dssp CSEEEEEEEEETTCCCCSEEEEECCCCCSSCE---------EEEEEECCCTTSCEEEEEEEEECSSCCEEEEC-CBEEES
T ss_pred CcceEEEEEecCCCCccceeEEEeCCcCCcee---------EEEEEEeecCCCceEEEEEEEecCCceEEEEe-eEEeee
Confidence 45689999999999999999999998764221 145666655333 3588999877777754432 222222
Q ss_pred cccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEE-EE--ECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCC
Q psy16852 99 KEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSIC-WY--RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDE 175 (579)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~-W~--~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 175 (579)
. ....+|.+. .+....+.+|+.+.|.|.+.|.|.+.+. |+ +++..+.... ..........++|.|.++...|.
T Consensus 160 ~-~~~~~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~--~~~~~~~~~~~~l~I~~~~~~d~ 235 (731)
T 2v5y_A 160 H-PCTRTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKE--IKVTSSRRFIASFNVVNTTKRDA 235 (731)
T ss_dssp S-CCSSSCEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEE--EEECCSSEEEEEEEECSCCTTTC
T ss_pred c-ccccccccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccc--eEEeccccceEEEEEcccccccC
Confidence 1 223455665 4567889999999999999999999888 77 5555443221 11111112246899999999999
Q ss_pred eEEEEEEEcCCce-eEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc----CCC--eEEEEEC
Q psy16852 176 AVYSVKAVNTFGR-AECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT----PTP--EVKWFKN 248 (579)
Q Consensus 176 G~Y~C~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~----p~~--~v~W~~~ 248 (579)
|.|+|.|.|..|. ......+.+. .+|.....+... ......+.|.|..... +.. .+.|...
T Consensus 236 g~Y~c~A~n~~G~~~s~~~~l~V~-----------~~P~~~~~p~~~-~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~ 303 (731)
T 2v5y_A 236 GKYRCMIRTEGGVGISNYAELVVK-----------EPPVPIAPPQLA-SVGATYLWIQLNANSINGDGPIVAREVEYCTA 303 (731)
T ss_dssp EEEEEEEEETTEEEECCCEEEEEE-----------CCCCBSSCCEEE-EECSSCEEEECCCSSBSSCSCCCEEEEEEEES
T ss_pred eEEEEEEECCCCCcceeeEEEEEe-----------cCCCCCCCccee-ccCCceEEEEeCCcccCCCCccEEEEEEEEEC
Confidence 9999999999987 4444555554 222222222222 2245678888875321 112 4566554
Q ss_pred CEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEE--cCCeeeEEEEEEEEEecc----ceeeeeeeeeeccccCceee
Q psy16852 249 GKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVV--NEAGEARTSGSVTITVAE----AETVMMDVRVESHPTASFQW 322 (579)
Q Consensus 249 ~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~--n~~g~~~~~~~~~v~~~~----~~~~~l~~~~~~~~~~~~~~ 322 (579)
+.... .........+.|.++...+...|+|.|. |..|....+..+.+.... ..+..+...........+.|
T Consensus 304 ~~~~~---~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~~~~~~~~~~~sv~l~W 380 (731)
T 2v5y_A 304 SGSWN---DRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRW 380 (731)
T ss_dssp SSSCE---EEEECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCCCSCCCEEEEEEEECSSCEEEEE
T ss_pred CCCce---EEeccCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecCCCCCCCCceeEEEeccCCeEEEEE
Confidence 21110 1112233578999999999999999999 998876544444444222 33344444444455566666
Q ss_pred eecCeeEEEeeeC-CCeEEEEECCEEccCCCeEE--EEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEE
Q psy16852 323 FIHSEPVVVTGKP-TPLVTWSHDGTPMKEGKEVT--IYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVE 399 (579)
Q Consensus 323 ~~~~~~~~~~g~p-~~~i~W~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 399 (579)
........ .+.. ...+.|...+... ..... ..........+.|.++.+...+.|+..|.|..|... +..+.+.
T Consensus 381 ~~p~~~~~-~~~~~~y~v~y~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~-S~~~~~~ 456 (731)
T 2v5y_A 381 EPFGYNVT-RCHSYNLTVHYCYQVGGQ--EQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-SQELIVQ 456 (731)
T ss_dssp ECCCHHHH-CSSSCEEEEEEEEESSSS--EEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEEE-CCCEEEE
T ss_pred ECCCcccc-cceeeeEEEEEEEccCCC--CccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCCC-CceEEEE
Confidence 54321000 0000 0134443322100 00000 001112233788999999999999999999999764 5455554
Q ss_pred ecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCcee
Q psy16852 400 EKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAV 479 (579)
Q Consensus 400 ~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~ 479 (579)
.....+.+|. ...+.+... .....+.|......-..-..|.+.+ ......+. .
T Consensus 457 T~~~~P~~p~--------------~~~~~~~~~-~~si~l~W~~P~~~~g~i~~Y~V~~-----------~~~~~~~~-~ 509 (731)
T 2v5y_A 457 TDEDLPGAVP--------------TESIQGSTF-EEKIFLQWREPTQTYGVITLYEITY-----------KAVSSFDP-E 509 (731)
T ss_dssp CCCCCCCCCC--------------TTTCEEEEE-TTEEEEECCCCSCCSSCCCEEEEEE-----------EEEEECC---
T ss_pred ccCCCCCCCC--------------cceEEeeec-CCeEEEEEcCCCCCCCCccceEEEE-----------EECcCCCc-c
Confidence 4321111110 011122221 1123556654211000112222222 11000000 0
Q ss_pred EEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 480 YSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 480 y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
+ ........+...+....+++.++...-...|+..|.|..|....+. +.+.
T Consensus 510 ~--~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~-~~~~ 560 (731)
T 2v5y_A 510 I--DLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPAT-NQFT 560 (731)
T ss_dssp ---CCCCCEEEEEEETTCCEEEECSCCTTEEEEEEEEEEETTEEEEEEE-EEEE
T ss_pred c--cccCcceEEeecCCcceEEecCCCCCCEEEEEEEEEeCCccCCCcc-cEEE
Confidence 0 0000011233345566789999999989999999999999766553 4443
No 210
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.83 E-value=1.3e-19 Score=164.21 Aligned_cols=171 Identities=16% Similarity=0.200 Sum_probs=122.8
Q ss_pred ccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEEC--CEEe-----------------cCCCCEEEEEe--CCEEEEEE
Q psy16852 10 IEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKD--GTEL-----------------HATEHYLITTV--ESVSTLEI 66 (579)
Q Consensus 10 ~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~--g~~~-----------------~~~~~~~~~~~--~~~~~L~i 66 (579)
+..|.++.+.+|++++|.|.+.+.+ .+.+.|||+ +..+ ....++.+... .+..+|+|
T Consensus 4 l~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (256)
T 1nqb_A 4 LQQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQL 83 (256)
T ss_dssp EEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEE
Confidence 4567889999999999999998764 568999994 2221 01345655543 45689999
Q ss_pred cCCCCCCCEEEEEEEEcCCee-----eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCC-----e
Q psy16852 67 INPTKEDIGVYTCKATNIGGV-----ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP-----S 136 (579)
Q Consensus 67 ~~~~~~d~G~Y~C~~~~~~g~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-----~ 136 (579)
.+++.+|+|.|+|.+.+..|. ....+.|.|.. ++.+...+..+.+.+|+.++|.|.+.+.|.+ .
T Consensus 84 ~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~------~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~ 157 (256)
T 1nqb_A 84 SSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSS------DIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTY 157 (256)
T ss_dssp CSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECC------CCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBC
T ss_pred CcCChhhCEEEEEEEeeccCccceeEEcCceeeeecc------cccEEecCcEEEEecCCcEEEEeEecCcccccccceE
Confidence 999999999999999987552 12235666642 3445555667788999999999999887765 9
Q ss_pred EEEEE--CCEEcc----------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852 137 ICWYR--GKEEIL----------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF 186 (579)
Q Consensus 137 i~W~~--~~~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 186 (579)
+.||+ ++..+. .....++.........+|.|.+++.+|+|.|+|.+.+..
T Consensus 158 v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~ 219 (256)
T 1nqb_A 158 LEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHV 219 (256)
T ss_dssp EEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred EEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCC
Confidence 99999 444321 011112222223456789999999999999999998753
No 211
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.83 E-value=1.8e-19 Score=161.16 Aligned_cols=143 Identities=22% Similarity=0.286 Sum_probs=107.3
Q ss_pred EEEEcccCCCCCEEEEEEEEcCc-eeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCe-EEEEEE-EeeCCCeEEE
Q psy16852 365 KLAISEVFPENAGLYSCTAVNPV-GEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPA-TLKATV-TGRPTPSICW 441 (579)
Q Consensus 365 ~l~i~~~~~~d~G~Y~C~a~n~~-g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~-~l~C~~-~g~p~~~v~W 441 (579)
.|.|.++..+|+|.|+|.|.+.. +.....+.|.|...+ ..|.+...+....+.+|+.+ +|.|.+ .|.|.|.+.|
T Consensus 78 ~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p---~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W 154 (231)
T 2pet_A 78 RLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKP---EATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITW 154 (231)
T ss_dssp CEEESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCC---CCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEE
T ss_pred eEEEcccCcccCceEEEEEEecCCCceEEEEEEEEEecC---CCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEE
Confidence 49999999999999999999987 788888888888754 34667666666777889988 999999 8999999999
Q ss_pred eeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEe--
Q psy16852 442 YRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAEN-- 519 (579)
Q Consensus 442 ~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n-- 519 (579)
++++..+..... ..............+.|.|++. +.|.|.....+|+|.|+|.|.|
T Consensus 155 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~~~--------------~~L~i~~~~~dd~g~Y~C~a~n~~ 212 (231)
T 2pet_A 155 YRNGQRLEVPVE--------MNPEGYMTSRTVREASGLLSLT--------------STLYLRLRKDDRDASFHCAAHYSL 212 (231)
T ss_dssp EETTEECCCCSS--------CCSSEEEEEEEEECTTSCEEEE--------------EEEEEECCGGGGGCEEEEEEEEEC
T ss_pred EECCccCccccc--------cccceeecceeEecCCCeEEEE--------------EEEEEecchhhCCceEEEEEEcCC
Confidence 999999866541 0001122233444566777665 3499987777789999999999
Q ss_pred ---CCee-EEEEEEEEE
Q psy16852 520 ---VAGS-VTCTATLSL 532 (579)
Q Consensus 520 ---~~g~-~~~~~~l~v 532 (579)
..|. ....+.|.|
T Consensus 213 ~~~~~~~~~s~~~~l~V 229 (231)
T 2pet_A 213 PEGRHGRLDSPTFHLTL 229 (231)
T ss_dssp GGGCEEEEECCCEECCC
T ss_pred cccccccccccceEEEE
Confidence 4555 445555544
No 212
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.83 E-value=2.8e-20 Score=166.00 Aligned_cols=170 Identities=9% Similarity=0.028 Sum_probs=123.1
Q ss_pred cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
.+-+|.|...|.. .|.+|++|+|+|.+.+ +...+.|||+|..+..... ..........|.|.+++.+|+|.|+|.+.
T Consensus 4 ~~~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~ 80 (242)
T 1p6f_A 4 TLPKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYR 80 (242)
T ss_dssp CCCCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC-SSCTTCCEEEEEECSCCGGGCEEEEEEEE
T ss_pred CCCCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccc-cccCCcceeEEEecCCCcccCeEEEEEEe
Confidence 4568889888888 8999999999999864 4458999999987642100 00011245789999999999999999998
Q ss_pred cCCeee--EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCC
Q psy16852 83 NIGGVA--TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160 (579)
Q Consensus 83 ~~~g~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~ 160 (579)
+..+.. +..+.|.|.+.. ..|.+...+. ..+.+|+.++|.|.+.+ +.+.+.|+|++..+.. ... ...
T Consensus 81 ~~~~~s~~S~~~~L~V~~~~---~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~w~k~g~~~~~----~~~--~~~ 149 (242)
T 1p6f_A 81 VGELWSEPSNLLDLVVTEMY---DTPTLSVHPG-PEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV----QRG--YGK 149 (242)
T ss_dssp ETTEECCCCCCEEEEEECCS---CCCEEEEESC-SEEETTCEEEEEEECTT-SCSEEEEEECSSSCEE----EEE--ECS
T ss_pred cCCccccCCcceEEEeeccc---CCCceEccCC-CccCCCCcEEEEEecCC-CCCEEEEEECCCccCc----ccc--CCC
Confidence 765432 345667776431 2344444333 45789999999999864 4569999999875532 111 123
Q ss_pred CeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852 161 GECVLSISEATPQDEAVYSVKAVNTF 186 (579)
Q Consensus 161 ~~~~l~i~~~~~~d~G~Y~C~~~~~~ 186 (579)
....|.|.+++.+|+|.|+|.+.+..
T Consensus 150 ~~~~l~I~~v~~~d~G~Y~C~a~n~~ 175 (242)
T 1p6f_A 150 VQAEFPLGPVTTAHRGTYRCFGSYNN 175 (242)
T ss_dssp SEEEEEEEECCGGGCEEEEEEEEEET
T ss_pred ceEEEEeCCCccccCEEEEEEEECCC
Confidence 45789999999999999999998753
No 213
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.83 E-value=4e-20 Score=167.49 Aligned_cols=181 Identities=13% Similarity=0.175 Sum_probs=125.0
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeC-----CCeeEEEECCE--E---e---------cCCCCEEEEEeCCEEEEEE
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHP-----LPTMTWQKDGT--E---L---------HATEHYLITTVESVSTLEI 66 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~-----~~~v~W~~~g~--~---~---------~~~~~~~~~~~~~~~~L~i 66 (579)
.+.+...|..+.+.+|++++|.|.+.+.+ .+.+.|||++. . + ....++......+..+|+|
T Consensus 34 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I 113 (252)
T 3bkj_L 34 DVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRI 113 (252)
T ss_dssp CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred ccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEE
Confidence 34566668899999999999999998876 57899999641 1 1 1134666666667789999
Q ss_pred cCCCCCCCEEEEEEEEcCCeeeE-EEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cCC-eEEEEECC
Q psy16852 67 INPTKEDIGVYTCKATNIGGVAT-CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP-SICWYRGK 143 (579)
Q Consensus 67 ~~~~~~d~G~Y~C~~~~~~g~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~ 143 (579)
.+++.+|+|.|+|.+.+..+... ....+.|.... .+|.+........+.+|+.++|.|.+.+. |.+ .|.|++++
T Consensus 114 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~---~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g 190 (252)
T 3bkj_L 114 SRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRAD---AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDG 190 (252)
T ss_dssp SSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCC---BCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred CCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCC---cCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECC
Confidence 99999999999999988654322 23456664321 23444432222233478999999999885 443 89999999
Q ss_pred EEccCCCCceEE-EcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCcee
Q psy16852 144 EEILPDNGHTME-FNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRA 189 (579)
Q Consensus 144 ~~~~~~~~~~~~-~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (579)
..+......... ....++ .+.|.|.++..+|+|.|+|.|.|.....
T Consensus 191 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 241 (252)
T 3bkj_L 191 SERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 241 (252)
T ss_dssp EEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred eecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence 887543100000 001112 2469999999999999999999976543
No 214
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.82 E-value=9.5e-20 Score=160.64 Aligned_cols=179 Identities=17% Similarity=0.175 Sum_probs=124.1
Q ss_pred eecCCCceEEccCCcEEEEEEEEeecCCeEEEEEC--CEE---ccC-------CCCceEEEcCCCCeEEEEECcCCCCCC
Q psy16852 108 FTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRG--KEE---ILP-------DNGHTMEFNPTTGECVLSISEATPQDE 175 (579)
Q Consensus 108 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~--~~~---~~~-------~~~~~~~~~~~~~~~~l~i~~~~~~d~ 175 (579)
+..++ .+.+.+|+.++|.|.+.+.|.+.+.||+. +.. +.. ....++......+...|.|.+++.+|+
T Consensus 4 v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 82 (213)
T 3mj8_L 4 LTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDE 82 (213)
T ss_dssp BBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhC
Confidence 34444 67889999999999999888999999982 211 100 011122222245668899999999999
Q ss_pred eEEEEEEEcCCc---eeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CC-CeEEEEECCE
Q psy16852 176 AVYSVKAVNTFG---RAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PT-PEVKWFKNGK 250 (579)
Q Consensus 176 G~Y~C~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~ 250 (579)
|.|+|.+.+..+ .......+.|... ...+|.+...+....+.+|+.++|.|.+.+. |+ +.+.|+++|.
T Consensus 83 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~-------~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~ 155 (213)
T 3mj8_L 83 ADYYCQSWDGTNSAWVFGSGTKVTVLGQ-------PNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGT 155 (213)
T ss_dssp EEEEEEEEETTTTEEEEBCCEEEEEECS-------CCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred EEEEEEeccCCcceeEEcCceEEEEeCC-------CCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCc
Confidence 999999999877 2223344444311 1145666555444445589999999999985 44 3999999999
Q ss_pred EeccCc-----eE---EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEE
Q psy16852 251 EIVSKD-----IE---TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSG 294 (579)
Q Consensus 251 ~i~~~~-----~~---~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~ 294 (579)
.+.... .. .....+.|.|..+..+|.|.|+|.|.|..+....++
T Consensus 156 ~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~ 207 (213)
T 3mj8_L 156 PITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSL 207 (213)
T ss_dssp EECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEE
T ss_pred ccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeee
Confidence 986532 11 111235689999999999999999999987655443
No 215
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.82 E-value=5.5e-20 Score=161.72 Aligned_cols=169 Identities=10% Similarity=0.083 Sum_probs=119.4
Q ss_pred CCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeE--EEEECcCCCCCCeEEEEE
Q psy16852 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC--VLSISEATPQDEAVYSVK 181 (579)
Q Consensus 104 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~Y~C~ 181 (579)
.+|.+...+. ..+.+|+.++|.|.+.+ +.+.+.|+|++..+..... .. ....... .|.|.+++.+|+|.|+|.
T Consensus 8 ~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~-~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 82 (218)
T 1uct_A 8 PMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIG-RR--LKFWNETDPEFVIDHMDANKAGRYQCQ 82 (218)
T ss_dssp CCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECS-EE--CC----CCCEEEECSCCGGGCEEEEEE
T ss_pred CCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCccccccc-cc--CCCCcceeeEEEEcccccccCEEEEEE
Confidence 3556665555 46889999999999876 6789999998765432211 00 0111223 799999999999999999
Q ss_pred EEcCCceeEEE--EEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEE
Q psy16852 182 AVNTFGRAECR--ANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIET 259 (579)
Q Consensus 182 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~ 259 (579)
+.|..+....+ ..+.+.. ...+|.+...+ ...+.+|+.++|.|.+.+.|.+.+.|+|+|..+... ...
T Consensus 83 a~n~~~~~~~s~~~~l~V~~--------~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~-~~~ 152 (218)
T 1uct_A 83 YRIGHYRFRYSDTLELVVTG--------LYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ-HQS 152 (218)
T ss_dssp EEETTTEEEECCCEEEEEEC--------SSCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS-EEE
T ss_pred EEcCCCceeecCCEEEEEcC--------cccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc-ccC
Confidence 99976644333 3333331 11345555444 346789999999997667777899999999876542 223
Q ss_pred eCCeEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852 260 KDNVTKLVIKQTTKKTTGKYEIRVVNEA 287 (579)
Q Consensus 260 ~~~~~~l~i~~~~~~d~G~y~C~a~n~~ 287 (579)
......|.|.+++.+|+|.|+|.|.|..
T Consensus 153 ~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 180 (218)
T 1uct_A 153 GEHPANFSLGPVDLNVSGIYRCYGWYNR 180 (218)
T ss_dssp CSSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred CCccCEEEEccCCcccCEEEEEEEEcCC
Confidence 3456789999999999999999999863
No 216
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.82 E-value=6.7e-20 Score=159.01 Aligned_cols=170 Identities=12% Similarity=0.014 Sum_probs=111.2
Q ss_pred CCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 184 (579)
+|.+...+.. .+.+|++++|.|.+.+.|. .+.|+|++..+..... ..........|.|.+++.+|+|.|+|.+.|
T Consensus 5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~---~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n 79 (196)
T 2d3v_A 5 KATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQ---NPLEPKNKARFSIPSMTEHHAGRYRCYYYS 79 (196)
T ss_dssp BCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEE---CCCSSTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccc---cccCCccccEEEeccCChhHCeEEEEEEeC
Confidence 4455554443 6789999999999987655 9999999886643211 011234567899999999999999999998
Q ss_pred CCceeE--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceE--Ee
Q psy16852 185 TFGRAE--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIE--TK 260 (579)
Q Consensus 185 ~~~~~~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~--~~ 260 (579)
..+... ....+.+... ..+|.+...+ ...+.+|+.++|.|.+.+.| +.+.|+++|..+...... ..
T Consensus 80 ~~g~~~~s~~~~l~V~~~--------~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~ 149 (196)
T 2d3v_A 80 PAGWSEPSDPLELVVTGF--------YNKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLT 149 (196)
T ss_dssp TTEECBCCCCEEEEEECS--------SCCCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEEEEECEEC
T ss_pred CCCcCCcCccEEEEecCC--------CCCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccc
Confidence 766433 2344444311 1245554433 24678999999999999888 899999999876432211 11
Q ss_pred ---CCeEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852 261 ---DNVTKLVIKQTTKKTTGKYEIRVVNEAGE 289 (579)
Q Consensus 261 ---~~~~~l~i~~~~~~d~G~y~C~a~n~~g~ 289 (579)
.....|.|.+++.+|+|.|+|.|.|..+.
T Consensus 150 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~ 181 (196)
T 2d3v_A 150 PSGQFQALFPVGPVTPSHRWMLRCYGSRRHIL 181 (196)
T ss_dssp TTSCEEEEEECCCCBTTBCEEEEEEEEETTEE
T ss_pred cCCCceeEEEeeecCcccCeeEEEEEEccCCC
Confidence 23478999999999999999999997653
No 217
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.82 E-value=7.7e-20 Score=165.78 Aligned_cols=178 Identities=15% Similarity=0.188 Sum_probs=122.4
Q ss_pred cCCCceEEccCCcEEEEEEEEe---ecCCeEEEEECCEEcc----------------------------CCCCceEEEcC
Q psy16852 110 KPLKPVIAEAQSPATLKATVTG---RPTPSICWYRGKEEIL----------------------------PDNGHTMEFNP 158 (579)
Q Consensus 110 ~~~~~~~~~~g~~~~l~C~~~~---~p~~~i~W~~~~~~~~----------------------------~~~~~~~~~~~ 158 (579)
.++.++.+.+|+.++|.|.+.+ .|.+.|.|++++.... .....+.....
T Consensus 7 ~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 86 (250)
T 2fbo_J 7 TTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN 86 (250)
T ss_dssp CSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC
T ss_pred cCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc
Confidence 3445678899999999999987 7789999999864320 00111111111
Q ss_pred CCCeEEEEECcCCCCCCeEEEEEEEcCCcee-----EEEEEEEEeeccccCCCCccCCCeE-eccCCceeeCCCCeEEEE
Q psy16852 159 TTGECVLSISEATPQDEAVYSVKAVNTFGRA-----ECRANLVLRKATTIDKPRVLEAPTI-VRPLQALLVPKDSTVTLE 232 (579)
Q Consensus 159 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~p~~-~~~~~~~~~~~g~~~~l~ 232 (579)
.+...|.|.+++.+|+|.|+|.+.+..+.. .....+.|... ..+|.+ ...+....+.+|+.+.|.
T Consensus 87 -~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~--------~~~~~~~~~~~~~~~v~~g~~v~L~ 157 (250)
T 2fbo_J 87 -LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGH--------TPSNNVHVSTAEVVQVDEGNDITMT 157 (250)
T ss_dssp -TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTT--------SCCSCCEECCCSEEECCTTCCEEEC
T ss_pred -CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEecc--------CCCCeEEEecCceEEecCCCcEEEE
Confidence 234579999999999999999999876643 33455555321 012222 233445667889999999
Q ss_pred EEEEccCCCeEEEEECCEEeccCc------------------------eEEeCCeEEEEEcccCCCCCeEEEEEEEcCC-
Q psy16852 233 AEYTGTPTPEVKWFKNGKEIVSKD------------------------IETKDNVTKLVIKQTTKKTTGKYEIRVVNEA- 287 (579)
Q Consensus 233 C~~~~~p~~~v~W~~~~~~i~~~~------------------------~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~- 287 (579)
|.+.+.|.+.+.|++++..+.... .........|.|.++..+|+|.|+|.|.|..
T Consensus 158 C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g 237 (250)
T 2fbo_J 158 CPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQG 237 (250)
T ss_dssp CCEESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSS
T ss_pred EEecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCcc
Confidence 999998999999999988765421 0011122579999999999999999999954
Q ss_pred --eeeEEEEEE
Q psy16852 288 --GEARTSGSV 296 (579)
Q Consensus 288 --g~~~~~~~~ 296 (579)
|....+..|
T Consensus 238 ~~g~~~~~~~l 248 (250)
T 2fbo_J 238 ELDADRSSTIL 248 (250)
T ss_dssp GGGEEEEEEEE
T ss_pred ccCccceeEEE
Confidence 444444433
No 218
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.82 E-value=3.4e-19 Score=161.65 Aligned_cols=182 Identities=18% Similarity=0.274 Sum_probs=126.0
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC--EE-------------ecCCCCEEEE--EeCCEEEEEEcC
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG--TE-------------LHATEHYLIT--TVESVSTLEIIN 68 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g--~~-------------~~~~~~~~~~--~~~~~~~L~i~~ 68 (579)
+..+...|.++.+.+|++++|.|.+.+.+.+.+.|||.. .. .....++... ......+|+|.+
T Consensus 3 ~~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~ 82 (256)
T 3tf7_C 3 AQSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKAS 82 (256)
T ss_dssp -CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESS
T ss_pred ccEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECC
Confidence 356777889999999999999999998888899999832 11 1112344442 224578899999
Q ss_pred CCCCCCEEEEEEEEcCCe----eeEEEEEEEEEecc--------------cCCCCCceecCCCceEEccCCcEEEEEEEE
Q psy16852 69 PTKEDIGVYTCKATNIGG----VATCSANLIVLEKE--------------ESGEAPKFTKPLKPVIAEAQSPATLKATVT 130 (579)
Q Consensus 69 ~~~~d~G~Y~C~~~~~~g----~~~~~~~~~v~~~~--------------~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~ 130 (579)
++.+|+|.|+|.+.+..+ .....+.|.|.... ....++.+...+....+.+|+.++|.|.+.
T Consensus 83 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~ 162 (256)
T 3tf7_C 83 VHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQT 162 (256)
T ss_dssp CCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEEC
T ss_pred CCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcC
Confidence 999999999999998654 22234566666410 112355666677778888999999999997
Q ss_pred eecCCeEEEEECCE--E---cc------------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCcee
Q psy16852 131 GRPTPSICWYRGKE--E---IL------------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRA 189 (579)
Q Consensus 131 ~~p~~~i~W~~~~~--~---~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (579)
+. .+.+.||+... . +. ...++... .......+|.|.+++.+|+|.|+|.+.|..|..
T Consensus 163 ~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~ 236 (256)
T 3tf7_C 163 NS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKAT-RTTQEDFFLTLESASPSQTSLYFCASSDAPGQL 236 (256)
T ss_dssp SC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEE-CCSSSBCEEEESSCCGGGCEEEEEEEEEETTEE
T ss_pred CC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEE-eCCCCeEEEEECCCCHHHCEEEEEEecCCCCcc
Confidence 65 67999998321 1 10 01111111 112345689999999999999999999876643
No 219
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.82 E-value=1.5e-20 Score=167.05 Aligned_cols=181 Identities=17% Similarity=0.222 Sum_probs=122.7
Q ss_pred cCceeeeCCCCEEEEEEEEeeCC-----CeeEEEECCEEec-------------CCCCEEEEE---eCCEEEEEEcCCCC
Q psy16852 13 IQPVVSHQEQPALFTCKVEGHPL-----PTMTWQKDGTELH-------------ATEHYLITT---VESVSTLEIINPTK 71 (579)
Q Consensus 13 p~~~~v~~G~~~~l~C~~~~~~~-----~~v~W~~~g~~~~-------------~~~~~~~~~---~~~~~~L~i~~~~~ 71 (579)
+.++.+.+|++++|.|.+.+.+. +.+.|++++.... ...+..+.. ..+..+|.|.+++.
T Consensus 2 ~~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~ 81 (222)
T 4i0k_A 2 EDPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRV 81 (222)
T ss_dssp CCCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCG
T ss_pred CCCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccc
Confidence 35678999999999999987653 5899999874320 111221110 01257799999999
Q ss_pred CCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEE-ccCC
Q psy16852 72 EDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEE-ILPD 149 (579)
Q Consensus 72 ~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~-~~~~ 149 (579)
+|+|.|+|.+.+. +.....+.+.|...+ ..|.+...+ ...+.+|+.++|.|.+ .+.|.+.+.|++++.. +...
T Consensus 82 ~D~G~Y~C~~~~~-~~~~~~~~l~V~~~~---~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~ 156 (222)
T 4i0k_A 82 TDEGSYTCFVSIQ-DFDSAAVSLQVAAPY---SKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGN 156 (222)
T ss_dssp GGCSCEEEEEEEC-CCCCCCCCCCCCBCC---CCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSE
T ss_pred ccCEEEEEEEEeC-CCceEEEEEEEEcCC---CCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCC
Confidence 9999999999975 333444555555432 233444333 3356789999999999 7889999999995443 3322
Q ss_pred CCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852 150 NGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198 (579)
Q Consensus 150 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~ 198 (579)
..........+....|.|.++..+|+|.|+|.+.|..|....+..+.|.
T Consensus 157 ~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 205 (222)
T 4i0k_A 157 VTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTIT 205 (222)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECC
T ss_pred cceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEe
Confidence 2222222333333568899999999999999999999998888887765
No 220
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.82 E-value=1.2e-19 Score=160.57 Aligned_cols=180 Identities=17% Similarity=0.223 Sum_probs=119.7
Q ss_pred ccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEEC--CEEec-----------------CCCCEEEEEe--CCEEEEEE
Q psy16852 10 IEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKD--GTELH-----------------ATEHYLITTV--ESVSTLEI 66 (579)
Q Consensus 10 ~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~--g~~~~-----------------~~~~~~~~~~--~~~~~L~i 66 (579)
+..|.++.+.+|++++|.|.+.+.+ .+.+.|||+ |..+. ...++.+... ....+|.|
T Consensus 4 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (219)
T 1c1e_H 4 LVQSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQI 83 (219)
T ss_dssp EEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEE
T ss_pred EeCCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEE
Confidence 3457788999999999999998764 578999997 33221 1245554433 34679999
Q ss_pred cCCCCCCCEEEEEEEEcCCe----eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEe-ecCC-eEEEE
Q psy16852 67 INPTKEDIGVYTCKATNIGG----VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTP-SICWY 140 (579)
Q Consensus 67 ~~~~~~d~G~Y~C~~~~~~g----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~ 140 (579)
.+++.+|+|.|+|.+.+..+ .....+.+.|...+ ..+|.+........+.+|+.++|.|.+.+ +|.+ .|.|+
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~ 161 (219)
T 1c1e_H 84 NNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAK--TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWN 161 (219)
T ss_dssp CSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCC--CBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEG
T ss_pred CCCCcccCEEEEEEEeccCcccceeecCceEEEEecCC--CCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEE
Confidence 99999999999999998762 12234567775421 12344433222234568999999999988 7888 99999
Q ss_pred ECCEEccCCCCceEEEcCC--CCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEE
Q psy16852 141 RGKEEILPDNGHTMEFNPT--TGECVLSISEATPQDEAVYSVKAVNTFGRAECRA 193 (579)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 193 (579)
+++..+......... ... ...+.|.|..... |.|.|+|.|.|..+......
T Consensus 162 ~~g~~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~~~~ 214 (219)
T 1c1e_H 162 SGSLSSGVHTFPAVL-QSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKVDK 214 (219)
T ss_dssp GGTBCTTEEECCCEE-SSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEEEEE
T ss_pred eCCcccceEecCCcc-cCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCccEEE
Confidence 998754211110111 110 0124688854444 56999999999887654433
No 221
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=156.13 Aligned_cols=160 Identities=16% Similarity=0.144 Sum_probs=113.8
Q ss_pred ccccCceeeeCCCCEEEEEEEEe-eCCCeeEEEECCEEec---CC---------------CCEEEEEeCCEEEEEEcCCC
Q psy16852 10 IEKIQPVVSHQEQPALFTCKVEG-HPLPTMTWQKDGTELH---AT---------------EHYLITTVESVSTLEIINPT 70 (579)
Q Consensus 10 ~~~p~~~~v~~G~~~~l~C~~~~-~~~~~v~W~~~g~~~~---~~---------------~~~~~~~~~~~~~L~i~~~~ 70 (579)
...|..+.+.+|++++|.|.+.+ .+.+.|.|+++|..+. .. .+. ... .+.+|+|.+++
T Consensus 2 s~~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~--~~~-~~~sL~I~~v~ 78 (193)
T 2if7_A 2 SLTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRL--NFT-QSYSLQLSNLK 78 (193)
T ss_dssp -CCCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTE--EEC-TTCCEEECSCC
T ss_pred CCCCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccE--EEC-CCeEEEECCCC
Confidence 34578899999999999999875 3446899999987542 11 122 222 34789999999
Q ss_pred CCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCC-cEEEEEEEEee-cCCeEEEEECCEEccC
Q psy16852 71 KEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQS-PATLKATVTGR-PTPSICWYRGKEEILP 148 (579)
Q Consensus 71 ~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~-~~~l~C~~~~~-p~~~i~W~~~~~~~~~ 148 (579)
.+|+|.|+|.+.+..+.....+.|.|...+. .|.+.... .....|. .++|.|.+.+. |.+.|.|++++..+..
T Consensus 79 ~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~---~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~ 153 (193)
T 2if7_A 79 MEDTGSYRAQISTKTSAKLSSYTLRILRQLR---NIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSS 153 (193)
T ss_dssp GGGCEEEEEEEECSSCEEEEEEEEEEECCCE---EEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEES
T ss_pred cccCceEEEEEEecCCCeEEEEEEEEEccCC---CCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCC
Confidence 9999999999999888766677888865321 12333222 1223455 89999999885 4799999999886532
Q ss_pred CCCceEEEcCCCCeEEEEECcCCCC-CCeEEEEEEEcCCceeE
Q psy16852 149 DNGHTMEFNPTTGECVLSISEATPQ-DEAVYSVKAVNTFGRAE 190 (579)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~i~~~~~~-d~G~Y~C~~~~~~~~~~ 190 (579)
. ..|.|.....+ |+|.|+|.|.|..|...
T Consensus 154 ~-------------~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s 183 (193)
T 2if7_A 154 Q-------------PNLTVSWDPRISSEQDYTCIAENAVSNLS 183 (193)
T ss_dssp S-------------SEEEEEECTTTCSCCEEEEEEEETTEEEE
T ss_pred C-------------CeEEEEeccCcCCCCcEEEEEECCCCccc
Confidence 1 13566544444 89999999999988763
No 222
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.82 E-value=1.1e-19 Score=160.26 Aligned_cols=174 Identities=13% Similarity=0.168 Sum_probs=121.5
Q ss_pred ecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCE--Ec----------cCCCCceEEEcCCCCeEEEEECcCCCCCCe
Q psy16852 109 TKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE--EI----------LPDNGHTMEFNPTTGECVLSISEATPQDEA 176 (579)
Q Consensus 109 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 176 (579)
...+..+.+.+|+.+.|.|.+.+.|.+.|.||+++. .+ ......++......+...|.|.+++.+|+|
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 84 (213)
T 3d9a_L 5 TQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFG 84 (213)
T ss_dssp EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred EeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCE
Confidence 334567788999999999999988888999998532 11 111112222222345678999999999999
Q ss_pred EEEEEEEcCCceeEE-EEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCC-eEEEEECCEEec
Q psy16852 177 VYSVKAVNTFGRAEC-RANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTP-EVKWFKNGKEIV 253 (579)
Q Consensus 177 ~Y~C~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~i~ 253 (579)
.|+|.+.+..+.... ...+.+.. ...+|.+...........|+.+.|.|.+.+ .|.+ .+.|+++|..+.
T Consensus 85 ~Y~C~~~~~~~~~~~~~~~l~V~~--------~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~ 156 (213)
T 3d9a_L 85 MYFCQQSNSWPYTFGGGTKLEIKR--------ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ 156 (213)
T ss_dssp EEEEEECSSSSCEECCCEEEEECC--------CCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred EEEEeeecCCcceeCCCEEEEEec--------CCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCc
Confidence 999999988664322 22444431 113555554333333447899999999987 6665 899999999987
Q ss_pred cC-ceEE---------eCCeEEEEEcccCCCCCeEEEEEEEcCCeee
Q psy16852 254 SK-DIET---------KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEA 290 (579)
Q Consensus 254 ~~-~~~~---------~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~ 290 (579)
.. .... ....+.|.|.++..+|+|.|+|.|.|.....
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 203 (213)
T 3d9a_L 157 NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 203 (213)
T ss_dssp TTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred ceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence 65 1100 0123589999999999999999999987654
No 223
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.82 E-value=3.8e-20 Score=168.45 Aligned_cols=179 Identities=20% Similarity=0.299 Sum_probs=110.7
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEE---ec--C--C-----------CCEEE-EEeCCEEEE
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTE---LH--A--T-----------EHYLI-TTVESVSTL 64 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~---~~--~--~-----------~~~~~-~~~~~~~~L 64 (579)
+|.+...|.++.+.+|++++|.|.+.+.+.+.+.|||. +.. +. . . ..+.. .......+|
T Consensus 2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 81 (259)
T 3omz_A 2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM 81 (259)
T ss_dssp ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence 67888889999999999999999998888889999992 111 10 0 0 11111 111234679
Q ss_pred EEcCCCCCCCEEEEEEEEcCCe---eeEEEEEEEEEecccCCC-----------CCceecCCCceEEccCCcEEEEEEEE
Q psy16852 65 EIINPTKEDIGVYTCKATNIGG---VATCSANLIVLEKEESGE-----------APKFTKPLKPVIAEAQSPATLKATVT 130 (579)
Q Consensus 65 ~i~~~~~~d~G~Y~C~~~~~~g---~~~~~~~~~v~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~l~C~~~ 130 (579)
+|.+++.+|+|.|+|.+.+..+ .......+.|......+. .+.+...+..+.+.+|++++|.|.+.
T Consensus 82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~ 161 (259)
T 3omz_A 82 ILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYE 161 (259)
T ss_dssp EESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEE
T ss_pred EECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECC
Confidence 9999999999999999998765 333456677765432111 34566667778899999999999887
Q ss_pred ee-cCCeEEEEECCE--E---cc---------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852 131 GR-PTPSICWYRGKE--E---IL---------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184 (579)
Q Consensus 131 ~~-p~~~i~W~~~~~--~---~~---------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 184 (579)
+. +.+.+.||+... . +. ...++....+.......|.|.+++.+|+|.|+|.+.+
T Consensus 162 ~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 230 (259)
T 3omz_A 162 TSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGE 230 (259)
T ss_dssp CCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEES
T ss_pred CccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeC
Confidence 64 778999998431 1 10 0112222211233456799999999999999999985
No 224
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.82 E-value=6.4e-20 Score=174.56 Aligned_cols=197 Identities=17% Similarity=0.169 Sum_probs=145.1
Q ss_pred CCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCc
Q psy16852 73 DIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGH 152 (579)
Q Consensus 73 d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~ 152 (579)
|.|.|+|.+.+.... ..+ ....+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....
T Consensus 136 ~~~~~~C~~~~~l~~----l~~------~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~- 204 (347)
T 2ifg_A 136 PEQKLQCHGQGPLAH----MPN------ASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM- 204 (347)
T ss_dssp GGGCCCCSSSSCSSC----CCC------TTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC-
T ss_pred cccCCCCCCChHHhc----CCc------ccCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccc-
Confidence 578899987652111 111 112356676667777889999999999999999999999998875432211
Q ss_pred eEEEcCCCCeEEEEECcCCCCCCe-EEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEE
Q psy16852 153 TMEFNPTTGECVLSISEATPQDEA-VYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTL 231 (579)
Q Consensus 153 ~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l 231 (579)
.......+.|.|.+++.+|+| .|+|.+.|..|.......+.|. .+|.+ ......+|+.+.|
T Consensus 205 ---~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~-----------~~P~i----~~~~~~~g~~v~l 266 (347)
T 2ifg_A 205 ---KSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVS-----------FPASV----QLHTAVEMHHWCI 266 (347)
T ss_dssp ---CCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCB-----------EEEEE----EECCCEESSSEEE
T ss_pred ---cceecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEc-----------CCCee----eeccCccCceEEE
Confidence 112345678999999999999 9999999998877555444432 34443 1112346899999
Q ss_pred EEEEEccCCCeEEEEECCEEeccCceEE---e-------CCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEE
Q psy16852 232 EAEYTGTPTPEVKWFKNGKEIVSKDIET---K-------DNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298 (579)
Q Consensus 232 ~C~~~~~p~~~v~W~~~~~~i~~~~~~~---~-------~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v 298 (579)
.|.+.|.|.+.+.|+++|..+....... . .....|.|.+++.+|+|.|+|.|.|..|....++.+.|
T Consensus 267 ~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 343 (347)
T 2ifg_A 267 PFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 343 (347)
T ss_dssp EEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECS
T ss_pred EEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEe
Confidence 9999999999999999999988554211 1 23567999999999999999999999998877766554
No 225
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.82 E-value=8.3e-20 Score=155.45 Aligned_cols=164 Identities=14% Similarity=0.071 Sum_probs=119.1
Q ss_pred CCceecCCCceEEccCCcEEEEEEEEeecCC-eEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEE
Q psy16852 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAV 183 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 183 (579)
+|.+...+....+.+|+.++|.|.+.+.+.+ .+.|++++..+... ...|.|.+++.+|+|.|+|.+.
T Consensus 4 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~------------~~~L~i~~v~~~d~G~Y~C~~~ 71 (176)
T 1f2q_A 4 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET------------NSSLNIVNAKFEDSGEYKCQHQ 71 (176)
T ss_dssp CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC------------SSEEEECSCCGGGCEEEEEECT
T ss_pred CCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCC------------ceEEEEeccceecCEEEEEEcC
Confidence 4556666666788999999999999877764 79999999877532 3479999999999999999998
Q ss_pred cCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEE-ccCCCeEEEEECCEEeccCceEEeCC
Q psy16852 184 NTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYT-GTPTPEVKWFKNGKEIVSKDIETKDN 262 (579)
Q Consensus 184 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~i~~~~~~~~~~ 262 (579)
+..+... ..+.+. .++..... ....+.+|+.+.|.|.+. +.|.+.+.|+++|..+... ..
T Consensus 72 ~~~~s~~--~~l~V~-----------~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~-----~~ 132 (176)
T 1f2q_A 72 QVNESEP--VYLEVF-----------SDWLLLQA-SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW-----YE 132 (176)
T ss_dssp TSSCCCC--EEEEEE-----------CSSEEEEE-SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC-----CC
T ss_pred Ccccccc--EEEEEe-----------CcceeecC-CcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeee-----cC
Confidence 8665433 333332 22222222 224577999999999995 4566799999999988532 23
Q ss_pred eEEEEEcccCCCCCeEEEEEEEcCCeee-EEEEEEEEE
Q psy16852 263 VTKLVIKQTTKKTTGKYEIRVVNEAGEA-RTSGSVTIT 299 (579)
Q Consensus 263 ~~~l~i~~~~~~d~G~y~C~a~n~~g~~-~~~~~~~v~ 299 (579)
...|.|.++..+|+|.|+|.|.|..+.. ...+.+.|.
T Consensus 133 ~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~ 170 (176)
T 1f2q_A 133 NHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVI 170 (176)
T ss_dssp SSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred CCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEe
Confidence 4689999999999999999999975442 223444443
No 226
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.82 E-value=2.1e-19 Score=162.26 Aligned_cols=182 Identities=18% Similarity=0.204 Sum_probs=125.6
Q ss_pred CccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE----------------CCEEecCC---CCEEEEE-eCCEEEEEE
Q psy16852 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK----------------DGTELHAT---EHYLITT-VESVSTLEI 66 (579)
Q Consensus 7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~----------------~g~~~~~~---~~~~~~~-~~~~~~L~i 66 (579)
+.+...|..+.+.+|++++|.|.+.+.+.+.+.||| ++...... .++.+.. .....+|+|
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I 81 (246)
T 4dzb_B 2 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTV 81 (246)
T ss_dssp CCEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEE
T ss_pred CccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEE
Confidence 356778889999999999999999888888999999 33333222 3454443 345789999
Q ss_pred cCCCCCCCEEEEEEEEcCCe----eeEEEEEEEEEecccCCCCCcee-cCCCceEEccCCcEEEEEEEEeecCC--eEEE
Q psy16852 67 INPTKEDIGVYTCKATNIGG----VATCSANLIVLEKEESGEAPKFT-KPLKPVIAEAQSPATLKATVTGRPTP--SICW 139 (579)
Q Consensus 67 ~~~~~~d~G~Y~C~~~~~~g----~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W 139 (579)
.+++.+|+|.|+|.+.+..+ .....+.+.|........+|.+. ..+....+.+|+.++|.|.+.+.+++ .+.|
T Consensus 82 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W 161 (246)
T 4dzb_B 82 TSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 161 (246)
T ss_dssp CSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred CCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEE
Confidence 99999999999999987543 22234567776432222344433 23344445679999999999887764 9999
Q ss_pred EECCEEccCCCCceEE--EcC---CCCe----EEEEECcCCCCC-CeEEEEEEEcCCce
Q psy16852 140 YRGKEEILPDNGHTME--FNP---TTGE----CVLSISEATPQD-EAVYSVKAVNTFGR 188 (579)
Q Consensus 140 ~~~~~~~~~~~~~~~~--~~~---~~~~----~~l~i~~~~~~d-~G~Y~C~~~~~~~~ 188 (579)
++++..+......... ... .++. ..|.|.....+| .|.|+|.|.|....
T Consensus 162 ~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~ 220 (246)
T 4dzb_B 162 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 220 (246)
T ss_dssp EETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred EECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCC
Confidence 9999887643211000 000 1222 348888888888 99999999987543
No 227
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.82 E-value=1.9e-19 Score=137.51 Aligned_cols=97 Identities=31% Similarity=0.490 Sum_probs=89.9
Q ss_pred cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
+..||.|+..|.++.+.+|++++|.|.+.|.|.+.|+|+|||..+..+.++.+...+...+|.|.+++.+|+|.|+|.|.
T Consensus 10 ~~~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 89 (107)
T 3knb_B 10 QGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRAR 89 (107)
T ss_dssp CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEE
Confidence 34689999999999999999999999999999999999999999998888888888888999999999999999999999
Q ss_pred cCCeeeEEEEEEEEEec
Q psy16852 83 NIGGVATCSANLIVLEK 99 (579)
Q Consensus 83 ~~~g~~~~~~~~~v~~~ 99 (579)
|..|....++.|.|.++
T Consensus 90 N~~G~~~~~~~l~V~~p 106 (107)
T 3knb_B 90 NAAGEAYAAAAVTVLEP 106 (107)
T ss_dssp ETTEEEEEEEEEEEEC-
T ss_pred ECCCEEEEEEEEEEEcC
Confidence 99999999999998753
No 228
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.82 E-value=1.8e-19 Score=163.65 Aligned_cols=181 Identities=14% Similarity=0.203 Sum_probs=127.2
Q ss_pred CCCCccccccCceeeeCCCCEEEEEEEEee--CCCeeEEEECC--EE---e--------------cCCCCEEEEEe--CC
Q psy16852 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGH--PLPTMTWQKDG--TE---L--------------HATEHYLITTV--ES 60 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~--~~~~v~W~~~g--~~---~--------------~~~~~~~~~~~--~~ 60 (579)
-.+|.+...+..+.+.+|++|+|.|.+.+. +.+.+.|||.. .. + ....++.+... ..
T Consensus 4 ~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~ 83 (256)
T 3juy_B 4 HHHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSAN 83 (256)
T ss_dssp ---CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTT
T ss_pred ccceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCC
Confidence 356778888999999999999999999873 56689999832 11 0 01235655533 34
Q ss_pred EEEEEEcCCCCCCCEEEEEEEEcC------------CeeeEEEEEEEEEecccC---------CCCCceecCCCceEEcc
Q psy16852 61 VSTLEIINPTKEDIGVYTCKATNI------------GGVATCSANLIVLEKEES---------GEAPKFTKPLKPVIAEA 119 (579)
Q Consensus 61 ~~~L~i~~~~~~d~G~Y~C~~~~~------------~g~~~~~~~~~v~~~~~~---------~~~~~~~~~~~~~~~~~ 119 (579)
..+|+|.+++.+|+|.|+|.+.+. .+.......|.|...+.. ..++.+...+....+.+
T Consensus 84 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 163 (256)
T 3juy_B 84 TAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSP 163 (256)
T ss_dssp EEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECT
T ss_pred EEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeC
Confidence 678999999999999999999886 233334556777653211 01345566677888999
Q ss_pred CCcEEEEEEEEeecC-CeEEEEEC--CEEcc------------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852 120 QSPATLKATVTGRPT-PSICWYRG--KEEIL------------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184 (579)
Q Consensus 120 g~~~~l~C~~~~~p~-~~i~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 184 (579)
|++++|.|.+.+.+. +.+.||+. +..+. ...++.. .......+|.|.+++.+|+|.|+|.+.+
T Consensus 164 G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 241 (256)
T 3juy_B 164 GERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSG--SGSGTDFTLTITRVEPEDFALYYCQVYG 241 (256)
T ss_dssp TSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEE--EEETTEEEEEESSCCGGGCSEEEEEECC
T ss_pred CCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEE--EccCCEEEEEECCCCHhHCEEEEEEEee
Confidence 999999999988776 89999983 22111 1122222 2234567899999999999999999987
Q ss_pred CC
Q psy16852 185 TF 186 (579)
Q Consensus 185 ~~ 186 (579)
..
T Consensus 242 ~~ 243 (256)
T 3juy_B 242 AS 243 (256)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 229
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=160.74 Aligned_cols=181 Identities=13% Similarity=0.070 Sum_probs=126.0
Q ss_pred CCCceEEccCCcEEEEEEEEeecCC---eEEEEECCEEccCC----------------CCceEEEc---CCCCeEEEEEC
Q psy16852 111 PLKPVIAEAQSPATLKATVTGRPTP---SICWYRGKEEILPD----------------NGHTMEFN---PTTGECVLSIS 168 (579)
Q Consensus 111 ~~~~~~~~~g~~~~l~C~~~~~p~~---~i~W~~~~~~~~~~----------------~~~~~~~~---~~~~~~~l~i~ 168 (579)
.+..+.+.+|++++|.|.+.+.|.+ .|.|+|++..+... ...+.... ...+.++|.|.
T Consensus 5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~ 84 (218)
T 4frw_A 5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR 84 (218)
T ss_dssp CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence 3456778899999999999887765 58999976433210 00111111 11234679999
Q ss_pred cCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEEC
Q psy16852 169 EATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKN 248 (579)
Q Consensus 169 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~ 248 (579)
+++.+|+|.|+|.+.+..+............ ..++..........+..|..+.+.|.+.+.|.+.+.|+++
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~ 155 (218)
T 4frw_A 85 NAVQADEGEYECRVSTFPAGSFQARLRLRVL---------VPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTE 155 (218)
T ss_dssp SCCGGGCEEEEEEEEEETTEEEEEEEEEEEE---------BCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEES
T ss_pred eccHHHCCceeEEEEeccCceeeeEEEEEEe---------eeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEEC
Confidence 9999999999999987665443332222211 1222333344555678899999999999999999999999
Q ss_pred CEEeccCceEEe----CCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEe
Q psy16852 249 GKEIVSKDIETK----DNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300 (579)
Q Consensus 249 ~~~i~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~ 300 (579)
+..+........ ...+.|.|.++..+|.|.|+|.|.|..|.....+.+.|.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~V 211 (218)
T 4frw_A 156 VKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILHV 211 (218)
T ss_dssp SCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCE
T ss_pred CcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEEE
Confidence 877655432211 2245799999999999999999999999877776666554
No 230
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.81 E-value=3e-19 Score=164.41 Aligned_cols=177 Identities=16% Similarity=0.239 Sum_probs=124.1
Q ss_pred cccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--EEe-----------------cCCCCEEEEEe--CCEEEEE
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--TEL-----------------HATEHYLITTV--ESVSTLE 65 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~~~-----------------~~~~~~~~~~~--~~~~~L~ 65 (579)
++..|.++.+.+|++++|.|.+.+.+ .+.+.|||++ ..+ ....++..... ....+|+
T Consensus 29 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 108 (282)
T 1qok_A 29 KLQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQ 108 (282)
T ss_dssp EEEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEE
T ss_pred EEECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEE
Confidence 45678899999999999999998764 5689999954 111 01245555543 3468999
Q ss_pred EcCCCCCCCEEEEEEEEcCCe---e--eEEEEEEEEEecccC---------CCCCceecCCCceEEccCCcEEEEEEEEe
Q psy16852 66 IINPTKEDIGVYTCKATNIGG---V--ATCSANLIVLEKEES---------GEAPKFTKPLKPVIAEAQSPATLKATVTG 131 (579)
Q Consensus 66 i~~~~~~d~G~Y~C~~~~~~g---~--~~~~~~~~v~~~~~~---------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 131 (579)
|.+++.+|+|.|+|.+.+..| . ....+.+.|...+.. ..++.+...+..+.+.+|+.++|.|.+.+
T Consensus 109 I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~ 188 (282)
T 1qok_A 109 LSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASS 188 (282)
T ss_dssp ECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESS
T ss_pred ECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecC
Confidence 999999999999999998765 1 113456777654310 12334555566778999999999999988
Q ss_pred ecCCeEEEEE--CCEEcc----------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852 132 RPTPSICWYR--GKEEIL----------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF 186 (579)
Q Consensus 132 ~p~~~i~W~~--~~~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 186 (579)
.+ +.+.||| ++..+. .....++.........+|.|.+++.+|+|.|+|.+.+..
T Consensus 189 ~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~ 254 (282)
T 1qok_A 189 SV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSY 254 (282)
T ss_dssp CC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred CC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCC
Confidence 88 8999999 444321 001112222223456789999999999999999998753
No 231
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.81 E-value=2.4e-20 Score=167.15 Aligned_cols=180 Identities=14% Similarity=0.135 Sum_probs=122.4
Q ss_pred CccccccCceeeeCCCCEEEEEEEEeeCC-C-eeEEEECC--EEe------------cCCCCEEEEEeCCEEEEEEcCCC
Q psy16852 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPL-P-TMTWQKDG--TEL------------HATEHYLITTVESVSTLEIINPT 70 (579)
Q Consensus 7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~-~-~v~W~~~g--~~~------------~~~~~~~~~~~~~~~~L~i~~~~ 70 (579)
+.+.. |..+.+.+|++++|.|.+.+.+. + .+.|||++ ..+ ....++.........+|+|.+++
T Consensus 21 ~~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 99 (234)
T 2j6e_L 21 SVLTQ-PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLR 99 (234)
T ss_dssp CCCBC-CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCC
T ss_pred cEEeC-CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCC
Confidence 33444 88899999999999999987543 4 69999963 211 11346666656677899999999
Q ss_pred CCCCEEEEEEEEcCCee---eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecC--CeEEEEECCEE
Q psy16852 71 KEDIGVYTCKATNIGGV---ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT--PSICWYRGKEE 145 (579)
Q Consensus 71 ~~d~G~Y~C~~~~~~g~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~~ 145 (579)
.+|+|.|+|.+.+..+. ....+.+.|...+ ..+|.+..........+|+.++|.|.+.+.++ +.|.|++++..
T Consensus 100 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~--~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~ 177 (234)
T 2j6e_L 100 SEDEADYYCATWDDSLSAVIFGGGTKLTVLGQP--KAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAP 177 (234)
T ss_dssp STTCSEEEEEEEETTTTEEEECCCBCCCBCCCC--CCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEE
T ss_pred HHHCEEEEEEEEcCCcceeEecCCEEEEEecCC--CCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEE
Confidence 99999999999988762 2223455553321 12344333222223346889999999987543 49999999998
Q ss_pred ccCCCCceEEEcCC----CCeEEEEECcCCCCCCeEEEEEEEcCCcee
Q psy16852 146 ILPDNGHTMEFNPT----TGECVLSISEATPQDEAVYSVKAVNTFGRA 189 (579)
Q Consensus 146 ~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (579)
+............. ...+.|.|.++..+|+|.|+|.|.|..+..
T Consensus 178 l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 225 (234)
T 2j6e_L 178 VKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV 225 (234)
T ss_dssp CCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCC
T ss_pred CCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCce
Confidence 75431100000001 123579999999999999999999987653
No 232
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.81 E-value=3e-19 Score=161.87 Aligned_cols=180 Identities=17% Similarity=0.203 Sum_probs=125.1
Q ss_pred ccccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEEC--CEEe-----------------cCCCCEEEEEeC--CEEEE
Q psy16852 8 RFIEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKD--GTEL-----------------HATEHYLITTVE--SVSTL 64 (579)
Q Consensus 8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~--g~~~-----------------~~~~~~~~~~~~--~~~~L 64 (579)
+++..|.++.+.+|++++|.|.+.+.+ .+.+.|||. +..+ ....++.+.... ...+|
T Consensus 3 ~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 82 (253)
T 3uzq_A 3 KLLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYL 82 (253)
T ss_dssp CCEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEE
T ss_pred eeEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEE
Confidence 356778899999999999999998743 568999992 2111 112455555433 36789
Q ss_pred EEcCCCCCCCEEEEEEEEcCCeeeE-EEEEEEEEecc---------cCCCCCceecCCCceEEccCCcEEEEEEEEeecC
Q psy16852 65 EIINPTKEDIGVYTCKATNIGGVAT-CSANLIVLEKE---------ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT 134 (579)
Q Consensus 65 ~i~~~~~~d~G~Y~C~~~~~~g~~~-~~~~~~v~~~~---------~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~ 134 (579)
+|.+++.+|+|.|+|.+.+..+... ..+.+.|...+ ....++.+...+....+.+|++++|.|.+.+.+.
T Consensus 83 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~ 162 (253)
T 3uzq_A 83 HLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVD 162 (253)
T ss_dssp EECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCE
T ss_pred EeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccc
Confidence 9999999999999999998655432 35566775420 1112445666677788999999999999988776
Q ss_pred C----eEEEEECC--EEcc----------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852 135 P----SICWYRGK--EEIL----------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFG 187 (579)
Q Consensus 135 ~----~i~W~~~~--~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 187 (579)
+ .+.||++. ..+. .....++.........+|.|.+++.+|+|.|+|.+.|..+
T Consensus 163 ~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~ 231 (253)
T 3uzq_A 163 RYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVP 231 (253)
T ss_dssp ETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSS
T ss_pred cCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCC
Confidence 5 99999842 1111 0011122222334567899999999999999999988643
No 233
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.81 E-value=1.6e-18 Score=157.61 Aligned_cols=181 Identities=16% Similarity=0.202 Sum_probs=123.5
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEee--CCCeeEEEECC--E---Ee-------------cCCCCEEEEEe--CCEEE
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGH--PLPTMTWQKDG--T---EL-------------HATEHYLITTV--ESVST 63 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~--~~~~v~W~~~g--~---~~-------------~~~~~~~~~~~--~~~~~ 63 (579)
++..+..|.++.+.+|++|+|.|.+.+. +.+.+.|||.. . .+ ....++.+... ....+
T Consensus 8 ~~v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 87 (257)
T 3gkz_A 8 KEVQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVY 87 (257)
T ss_dssp -CEEEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEE
T ss_pred ccEEEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEE
Confidence 3444556888999999999999999884 46799999932 1 11 11245555443 34678
Q ss_pred EEEcCCCCCCCEEEEEEEEcCC----eeeEEEEEEEEEeccc--------CCCCCceecCCCceEEccCCcEEEEEEEEe
Q psy16852 64 LEIINPTKEDIGVYTCKATNIG----GVATCSANLIVLEKEE--------SGEAPKFTKPLKPVIAEAQSPATLKATVTG 131 (579)
Q Consensus 64 L~i~~~~~~d~G~Y~C~~~~~~----g~~~~~~~~~v~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 131 (579)
|+|.+++.+|+|.|+|.+.+.. ......+.+.|...+. ...++.+...+....+.+|+.++|.|.+.+
T Consensus 88 L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~ 167 (257)
T 3gkz_A 88 LQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASS 167 (257)
T ss_dssp EEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESS
T ss_pred EEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEcc
Confidence 9999999999999999999862 2233345677764310 012345556667788999999999999988
Q ss_pred ecCC-eEEEEEC--CEEcc---C-------CCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852 132 RPTP-SICWYRG--KEEIL---P-------DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF 186 (579)
Q Consensus 132 ~p~~-~i~W~~~--~~~~~---~-------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 186 (579)
.+.+ .+.||+. +..+. . ....++.........+|.|.+++.+|+|.|+|.+.+..
T Consensus 168 ~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 235 (257)
T 3gkz_A 168 SVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSF 235 (257)
T ss_dssp CCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred CccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCC
Confidence 7776 9999983 22111 0 00112222223456789999999999999999998753
No 234
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.81 E-value=2.5e-19 Score=158.06 Aligned_cols=173 Identities=17% Similarity=0.221 Sum_probs=118.2
Q ss_pred ccccCceeeeCCCCEEEEEEEEee-------CCCeeEEEECCEE------ec-----------CCCCEEEEEe--CCEEE
Q psy16852 10 IEKIQPVVSHQEQPALFTCKVEGH-------PLPTMTWQKDGTE------LH-----------ATEHYLITTV--ESVST 63 (579)
Q Consensus 10 ~~~p~~~~v~~G~~~~l~C~~~~~-------~~~~v~W~~~g~~------~~-----------~~~~~~~~~~--~~~~~ 63 (579)
+..|..+.+.+|++++|.|.+.+. +.+.+.|||++.. +. ...++.+... .+..+
T Consensus 4 ~~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~s 83 (214)
T 2zg1_A 4 LQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCS 83 (214)
T ss_dssp EECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCC
T ss_pred eeCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEE
Confidence 345888999999999999999754 4568999998753 10 1133333221 23468
Q ss_pred EEEcCCCCCCCEEEEEEEEcCCeeeE----EEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee----cCC
Q psy16852 64 LEIINPTKEDIGVYTCKATNIGGVAT----CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR----PTP 135 (579)
Q Consensus 64 L~i~~~~~~d~G~Y~C~~~~~~g~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~----p~~ 135 (579)
|.|.+++.+|+|.|+|.+.+..+... ..+.|.|...+ ..|.+..+ . .+.+|+.++|.|.+.+. |.+
T Consensus 84 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~---~~p~i~~~-~--~~~~G~~v~L~C~~~~~~~~~p~p 157 (214)
T 2zg1_A 84 LSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALI---EKPDIHFL-E--PLESGRPTRLSCSLPGSCEAGPPL 157 (214)
T ss_dssp EEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCC---CCCEEC---C--CCCTTCCEEEEEECTTCCSCSSCC
T ss_pred EEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCC---CCCceecC-c--cccCCCeEEEEEEeccCCCCCCCc
Confidence 99999999999999999998753221 35677776542 23344322 2 25689999999998653 789
Q ss_pred eEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEE
Q psy16852 136 SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196 (579)
Q Consensus 136 ~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~ 196 (579)
.+.|++++..+... . ....+.|.|..+..+|+|.|+|.|.|..+....+..+.
T Consensus 158 ~v~W~~~~~~~~~~-~-------~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~ 210 (214)
T 2zg1_A 158 TFSWTGNALSPLDP-E-------TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQ 210 (214)
T ss_dssp EEEEESSTTSSSCS-S-------CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEE
T ss_pred eEEEeCCCCccCCC-C-------ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEE
Confidence 99999988643211 1 12345799999999999999999999765443344443
No 235
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.81 E-value=1.5e-19 Score=155.27 Aligned_cols=162 Identities=12% Similarity=0.162 Sum_probs=119.2
Q ss_pred ceEEccCCcEEEEEEEEeecCCeEEEEECCEEccC------------CCCceEEEcC---CCCeEEEEECcCCCCCCeEE
Q psy16852 114 PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILP------------DNGHTMEFNP---TTGECVLSISEATPQDEAVY 178 (579)
Q Consensus 114 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~------------~~~~~~~~~~---~~~~~~l~i~~~~~~d~G~Y 178 (579)
.+.+.+|+.++|.|.+.+.|.+.+.|++++..+.. ....+..... ..+..+|.|.+++.+|+|.|
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 83 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 83 (184)
T ss_dssp EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence 45678999999999998888899999998753111 0111122111 23456799999999999999
Q ss_pred EEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceE
Q psy16852 179 SVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIE 258 (579)
Q Consensus 179 ~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~ 258 (579)
+|.+.+..+ ...+.+.. +.. +....+.+|+.++|.|.+.+.|.+.+.|++++..+.
T Consensus 84 ~C~~~~~~~----~~~l~V~~--------------~~~-~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~----- 139 (184)
T 2ny1_B 84 ICEVEDQKE----EVQLLVFG--------------LTA-NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI----- 139 (184)
T ss_dssp EEEETTEEE----EEEEEEEE--------------EEE-SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEE-----
T ss_pred EEEEEcCCC----cEEEEEEE--------------ecC-CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCccc-----
Confidence 999987644 23333331 111 222357889999999999999999999999876542
Q ss_pred EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEec
Q psy16852 259 TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA 301 (579)
Q Consensus 259 ~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~ 301 (579)
.....|.|.++..+|+|.|+|.|.|..+.....+.+.|...
T Consensus 140 --~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~ 180 (184)
T 2ny1_B 140 --QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAF 180 (184)
T ss_dssp --EESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred --cCceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEec
Confidence 23357999999999999999999999988877777766533
No 236
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.81 E-value=2.1e-19 Score=157.84 Aligned_cols=178 Identities=17% Similarity=0.214 Sum_probs=119.7
Q ss_pred cccCceeeeCCCCEEEEEEEEeeC--CCeeEEEEC--CEEec----------------CCCCEEEEEe--CCEEEEEEcC
Q psy16852 11 EKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKD--GTELH----------------ATEHYLITTV--ESVSTLEIIN 68 (579)
Q Consensus 11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~--g~~~~----------------~~~~~~~~~~--~~~~~L~i~~ 68 (579)
..|.++.+.+|++++|.|.+.+.+ .+.+.|||+ |.... ...++.+... .+..+|+|.+
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 84 (210)
T 3d9a_H 5 QESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNS 84 (210)
T ss_dssp EEESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred ecCCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECC
Confidence 457888999999999999998764 368999985 22210 1345555442 3467999999
Q ss_pred CCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cCC-eEEEEECCEEc
Q psy16852 69 PTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP-SICWYRGKEEI 146 (579)
Q Consensus 69 ~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~ 146 (579)
++.+|+|.|+|.+.+.. .......+.|...+ ..+|.+........+.+|+.++|.|.+.+. |.+ .|.|++++..+
T Consensus 85 v~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~--~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~ 161 (210)
T 3d9a_H 85 VTTEDTATYYCANWDGD-YWGQGTLVTVSAAK--TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSS 161 (210)
T ss_dssp CCGGGCEEEEEEETTSS-CBCCCEEEEECCCC--CBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred CCcccCEEEEEEEecCc-ccccceEEEeccCC--CCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCccc
Confidence 99999999999998753 12223456665321 223444432222345689999999999887 777 99999988754
Q ss_pred cCCCCceEEEcC-CCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEE
Q psy16852 147 LPDNGHTMEFNP-TTGECVLSISEATPQDEAVYSVKAVNTFGRAECR 192 (579)
Q Consensus 147 ~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 192 (579)
............ ....+.|.|..+..+| |.|+|.|.|..+.....
T Consensus 162 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~ 207 (210)
T 3d9a_H 162 GVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD 207 (210)
T ss_dssp TEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred ceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcccc
Confidence 211111111110 0013568999988877 99999999998865443
No 237
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.81 E-value=3.2e-19 Score=156.81 Aligned_cols=171 Identities=15% Similarity=0.163 Sum_probs=118.6
Q ss_pred CCceEEccCCcEEEEEEEEeecCCeEEEEECC--EEc----------cCCCCceEEEcCCCCeEEEEECcCCCCCCeEEE
Q psy16852 112 LKPVIAEAQSPATLKATVTGRPTPSICWYRGK--EEI----------LPDNGHTMEFNPTTGECVLSISEATPQDEAVYS 179 (579)
Q Consensus 112 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 179 (579)
+..+.+.+|+.++|.|.+.+.|.+.|.||++. ..+ ......++......+...|.|.+++.+|+|.|+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 86 (210)
T 1lk3_L 7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF 86 (210)
T ss_dssp CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence 56778999999999999988888899999842 211 011112222222345679999999999999999
Q ss_pred EEEEcCCceeEE-EEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCC-eEEEEECCEEeccC-
Q psy16852 180 VKAVNTFGRAEC-RANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTP-EVKWFKNGKEIVSK- 255 (579)
Q Consensus 180 C~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~i~~~- 255 (579)
|.+.+..+.... ...+.+.. ...+|.+...+.......|+.++|.|.+.+ .|.+ .+.|+++|+.+...
T Consensus 87 C~~~~~~~~~~~~~~~l~V~~--------~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~ 158 (210)
T 1lk3_L 87 CQQSWNGPLTFGAGTKLELKR--------ADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGV 158 (210)
T ss_dssp EEECSSSSCEECCCEEEEECC--------CCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTE
T ss_pred EEEEcCCCceeCCCEEEEEcC--------CCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCc
Confidence 999987654322 22444431 113455554333333447999999999987 4554 89999999988765
Q ss_pred ceE---------EeCCeEEEEEcccCCCCCeEEEEEEEcCCeee
Q psy16852 256 DIE---------TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEA 290 (579)
Q Consensus 256 ~~~---------~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~ 290 (579)
... .....+.|.|.++..+|+|.|+|.|.|.....
T Consensus 159 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 202 (210)
T 1lk3_L 159 LDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS 202 (210)
T ss_dssp EEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred eEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence 100 01112479999999999999999999987644
No 238
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.81 E-value=3.2e-19 Score=153.43 Aligned_cols=167 Identities=12% Similarity=0.015 Sum_probs=117.5
Q ss_pred CCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 184 (579)
.|.+...+.. .+.+|++++|.|.+.+ +...+.|+|++..+...... .........|.|.+++.+|+|.|+|.+.+
T Consensus 4 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~---~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 78 (188)
T 1oll_A 4 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPK---PPERINKVKFYIPDMNSRMAGQYSCIYRV 78 (188)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCS---SCTTCCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCcccccccc---cCCCcceeEEEeCcCCcccCeEEEEEecC
Confidence 3455554545 6889999999999864 45799999998876421110 01123457899999999999999999988
Q ss_pred CCceeE--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCC
Q psy16852 185 TFGRAE--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDN 262 (579)
Q Consensus 185 ~~~~~~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~ 262 (579)
..+... ....+.+.. ...+|.+...+ ...+.+|+.++|.|.+.+ +.+.+.|+|+|..+.. .......
T Consensus 79 ~~~~~~~s~~~~l~V~~--------~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~-~~~~~~~ 147 (188)
T 1oll_A 79 GELWSEPSNLLDLVVTE--------MYDTPTLSVHP-GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV-QRGYGKV 147 (188)
T ss_dssp TTEECCCCCCEEEEEES--------CSCCCEEEEES-CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEE-EEEECSS
T ss_pred CCCCCCCCCceEEEecc--------cCCCCeEEECC-CCccccCCEEEEEEEcCC-CCCEEEEEECCccccc-cccCCCc
Confidence 654332 223444431 11345555444 345789999999999765 4569999999876543 1223456
Q ss_pred eEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852 263 VTKLVIKQTTKKTTGKYEIRVVNEA 287 (579)
Q Consensus 263 ~~~l~i~~~~~~d~G~y~C~a~n~~ 287 (579)
...|.|.+++.+|+|.|+|.|.|..
T Consensus 148 ~~~L~I~~v~~~d~G~Y~C~a~n~~ 172 (188)
T 1oll_A 148 QAEFPLGPVTTAHRGTYRCFGSYNN 172 (188)
T ss_dssp EEEEEEEECCGGGCEEEEEECEEET
T ss_pred eeEEEECCCCcCCCcEEEEEEEcCC
Confidence 6889999999999999999998764
No 239
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.81 E-value=9e-19 Score=159.00 Aligned_cols=177 Identities=16% Similarity=0.192 Sum_probs=123.7
Q ss_pred ccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--EE---e--------------cCCCCEEEEEe--CCEEEEEE
Q psy16852 10 IEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--TE---L--------------HATEHYLITTV--ESVSTLEI 66 (579)
Q Consensus 10 ~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~~---~--------------~~~~~~~~~~~--~~~~~L~i 66 (579)
+..|.++.+.+|++|+|.|.+.+.+ .+.+.|||.. .. + ....++.+... ....+|+|
T Consensus 6 v~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I 85 (256)
T 3umt_A 6 LQQSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLEL 85 (256)
T ss_dssp EEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred EEccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEE
Confidence 3456678899999999999998755 5689999832 11 1 01245555543 34678999
Q ss_pred cCCCCCCCEEEEEEEEcC----CeeeEEEEEEEEEeccc----------CCCCCceecCCCceEEccCCcEEEEEEEEee
Q psy16852 67 INPTKEDIGVYTCKATNI----GGVATCSANLIVLEKEE----------SGEAPKFTKPLKPVIAEAQSPATLKATVTGR 132 (579)
Q Consensus 67 ~~~~~~d~G~Y~C~~~~~----~g~~~~~~~~~v~~~~~----------~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 132 (579)
.+++.+|+|.|+|.+.+. .+.....+.|.|...+. ...++.+...+....+.+|+.++|.|.+.+.
T Consensus 86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~ 165 (256)
T 3umt_A 86 RSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQD 165 (256)
T ss_dssp CSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSC
T ss_pred CCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecC
Confidence 999999999999999886 33334456677764211 0124566666777889999999999999888
Q ss_pred cCCeEEEEECC--EEcc----------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852 133 PTPSICWYRGK--EEIL----------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF 186 (579)
Q Consensus 133 p~~~i~W~~~~--~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 186 (579)
+.+.+.||++. ..+. .....++.........+|.|.+++.+|+|.|+|.+.+..
T Consensus 166 ~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 231 (256)
T 3umt_A 166 IGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASS 231 (256)
T ss_dssp CTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSS
T ss_pred CCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCC
Confidence 88899999842 1111 001112222233456789999999999999999998854
No 240
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.81 E-value=2.6e-19 Score=156.23 Aligned_cols=171 Identities=16% Similarity=0.221 Sum_probs=116.6
Q ss_pred CceeeeCCCCEEEEEEEEe----eCCCeeEEEECCEEecC------------CCCEEEEEeCCEEEEEEcCCCCCCCEEE
Q psy16852 14 QPVVSHQEQPALFTCKVEG----HPLPTMTWQKDGTELHA------------TEHYLITTVESVSTLEIINPTKEDIGVY 77 (579)
Q Consensus 14 ~~~~v~~G~~~~l~C~~~~----~~~~~v~W~~~g~~~~~------------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 77 (579)
.++.+.+|++++|.|.+.+ .+.+.+.|++++..+.. ..+..+ ...+..+|.|.+++.+|+|.|
T Consensus 2 ~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~-~~~~~~~L~I~~v~~~D~G~Y 80 (201)
T 1dr9_A 2 IHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIF-DITNNLSIVILALRPSDEGTY 80 (201)
T ss_dssp CEEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEE-ESTTTTEEEECSCCGGGCEEE
T ss_pred ceEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEE-ccCCCcEEEEecccchhCeEE
Confidence 3578999999999999853 35678999999987621 112222 123446899999999999999
Q ss_pred EEEEEcCCeee-----EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEE-eecCCeEEEEECCEEccCCCC
Q psy16852 78 TCKATNIGGVA-----TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNG 151 (579)
Q Consensus 78 ~C~~~~~~g~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~~~~~ 151 (579)
+|.+.+..|.. ...+.|.|...+ ..|.+.. .....|+.+.|.|.+. ++|.+.|.|++++..+....
T Consensus 81 ~C~~~~~~g~~~~~~~~~~~~l~V~~~~---~~p~~~~----~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~- 152 (201)
T 1dr9_A 81 ECVVLKYEKDAFKREHLAEVTLSVKADF---PTPSISD----FEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAIN- 152 (201)
T ss_dssp EEEEEECCTTSCEEEEEEEEEEEEECCC---CCCEEEE----EECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSE-
T ss_pred EEEEEcCCCCccccccccEEEEEEcCCC---CCCceEe----ccCCCCCeEEEEEecCCccCCCEEEEEECCEECcccc-
Confidence 99999976533 345566665432 1222221 1124588999999994 88999999999988876432
Q ss_pred ceEEEcCCCCeEEE-EECcCCCCCCeEEEEEEEcCCceeEEEE
Q psy16852 152 HTMEFNPTTGECVL-SISEATPQDEAVYSVKAVNTFGRAECRA 193 (579)
Q Consensus 152 ~~~~~~~~~~~~~l-~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 193 (579)
........++...+ .+..+..+|.|.|+|.|.|..+......
T Consensus 153 ~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~ 195 (201)
T 1dr9_A 153 TTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTF 195 (201)
T ss_dssp EEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEE
T ss_pred ceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEE
Confidence 23333333233222 3345556899999999999988765443
No 241
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.81 E-value=1.8e-19 Score=159.85 Aligned_cols=180 Identities=15% Similarity=0.170 Sum_probs=121.4
Q ss_pred cccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--EE---ec----------------CCCCEEEEEe--CCEEEEE
Q psy16852 11 EKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--TE---LH----------------ATEHYLITTV--ESVSTLE 65 (579)
Q Consensus 11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~~---~~----------------~~~~~~~~~~--~~~~~L~ 65 (579)
..|.++.+.+|++++|.|.+.+.+ .+.+.|||++ .. +. ...++.+... ....+|+
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 84 (222)
T 1q9r_B 5 VESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQ 84 (222)
T ss_dssp EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEE
T ss_pred ecCCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEE
Confidence 457788999999999999998754 5689999853 21 10 1245555543 3467999
Q ss_pred EcCCCCCCCEEEEEEEEcCCe-----eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cCC-eEE
Q psy16852 66 IINPTKEDIGVYTCKATNIGG-----VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP-SIC 138 (579)
Q Consensus 66 i~~~~~~d~G~Y~C~~~~~~g-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~ 138 (579)
|.+++.+|+|.|+|.+.+..+ .....+.+.|...+ ..+|.+........+.+|+.++|.|.+.+. |.+ .|.
T Consensus 85 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~ 162 (222)
T 1q9r_B 85 MNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAK--TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVT 162 (222)
T ss_dssp ECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSC--CBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEE
T ss_pred ECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCC--CCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEE
Confidence 999999999999999988654 22234566665421 223444332222235679999999999886 877 999
Q ss_pred EEECCEEccCCCCceEEEcC-CCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEE
Q psy16852 139 WYRGKEEILPDNGHTMEFNP-TTGECVLSISEATPQDEAVYSVKAVNTFGRAECRA 193 (579)
Q Consensus 139 W~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 193 (579)
|++++..+..........+. ....+.|.|.++..+| |.|+|.|.|..+......
T Consensus 163 W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~ 217 (222)
T 1q9r_B 163 WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK 217 (222)
T ss_dssp EGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEE
T ss_pred EecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEE
Confidence 99988754321000000110 0012468999999999 999999999988655443
No 242
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.81 E-value=5.9e-20 Score=157.45 Aligned_cols=159 Identities=15% Similarity=0.119 Sum_probs=115.8
Q ss_pred CCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 184 (579)
+|.+...+.. .+.+|+.++|.|.+.+ +.+.+.|+|++... . .....|.|.+++.+|+|.|+|.+.|
T Consensus 8 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~-------~-----~~~~~L~i~~v~~~D~G~Y~C~a~n 73 (184)
T 2gi7_A 8 KPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR-------Y-----QDQAVLFIPAMKRSLAGRYRCSYQN 73 (184)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCC-------E-----ESSSEEEESSCCGGGCEEEEEEEEE
T ss_pred CCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCccc-------c-----CcccEEEECcCChhhCceEEEEEEc
Confidence 4555555544 7889999999999877 77899999987640 0 1234799999999999999999999
Q ss_pred CCceeE--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCC
Q psy16852 185 TFGRAE--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDN 262 (579)
Q Consensus 185 ~~~~~~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~ 262 (579)
..|... ....+.+.. ...+|.+...+ ...+.+|+.++|.|.+.+. ++.+.|+++|..+.... .....
T Consensus 74 ~~g~~~~s~~~~l~V~~--------~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~-~~~~~w~k~g~~~~~~~-~~~~~ 142 (184)
T 2gi7_A 74 GSLWSLPSDQLELVATG--------VFAKPSLSAQP-GPAVSSGGDVTLQCQTRYG-FDQFALYKEGDPAPYKN-PERWY 142 (184)
T ss_dssp TTEEBCCCCCEEEEEES--------SSCCCEEEEEC-CCSSCCTTCEEEEEECSSC-CCEEEEEECCCCTTSCC-CCEEE
T ss_pred CCCccCCCCCEEEEecC--------cCCCCEEEeCC-CceecCCCcEEEEEEcCCC-CcEEEEEECCCcCccee-cCCCc
Confidence 776322 223444421 12345555444 3457789999999997654 46999999998775422 12233
Q ss_pred eEEEEEcccCCCCCeEEEEEEEcCCe
Q psy16852 263 VTKLVIKQTTKKTTGKYEIRVVNEAG 288 (579)
Q Consensus 263 ~~~l~i~~~~~~d~G~y~C~a~n~~g 288 (579)
...|.|.+++.+|+|.|+|.|.|..+
T Consensus 143 ~~~L~i~~v~~~D~G~Y~C~a~n~~~ 168 (184)
T 2gi7_A 143 RASFPIITVTAAHSGTYRCYSFSSRD 168 (184)
T ss_dssp EESSSEEEETTCCSEEEEEEEECTTS
T ss_pred eEEEEEccCCccCCeEEEEEEEeCCC
Confidence 46789999999999999999999754
No 243
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.80 E-value=5.7e-19 Score=149.45 Aligned_cols=153 Identities=16% Similarity=0.139 Sum_probs=115.7
Q ss_pred CceecCCCceEEccCCcEEEEEEEEeec-CCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852 106 PKFTKPLKPVIAEAQSPATLKATVTGRP-TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184 (579)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 184 (579)
|.+...+....+.+|+.+.|.|.+.+.| .+.+.|++++..+..... .+.+.+++.+|+|.|+|.+.+
T Consensus 5 p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~~------------~~~~~~~~~~d~G~Y~C~~~~ 72 (170)
T 3ry4_A 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ------------PSYRFKANNNDSGEYTCQTGQ 72 (170)
T ss_dssp CEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCCS------------SEEEEECCGGGCEEEEEEETT
T ss_pred CEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCcc------------ceEEEecccccCeEEEEEEeC
Confidence 3444455556788999999999998876 579999999998765422 356778999999999999987
Q ss_pred CCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCCeEEEEECCEEeccCceEEeCCe
Q psy16852 185 TFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTPEVKWFKNGKEIVSKDIETKDNV 263 (579)
Q Consensus 185 ~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~ 263 (579)
..... ...+.+. .++.+... ....+.+|+.+.|.|.+.+ .|.+.+.|+++|..+.. ....
T Consensus 73 ~~~s~--~~~l~v~-----------~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~-----~~~~ 133 (170)
T 3ry4_A 73 TSLSD--PVHLTVL-----------FEWLVLQT-PHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF-----SHLD 133 (170)
T ss_dssp SBCCC--CEEEEEE-----------CCSEEEEC-SCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEE-----ESSC
T ss_pred CCceE--eEEEEEE-----------CCceEecC-CCceeecCCeEEEEEECCCCCCCceEEEEECCeEccc-----cCCC
Confidence 54433 3334443 23333322 3345788999999999954 56679999999988753 2345
Q ss_pred EEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852 264 TKLVIKQTTKKTTGKYEIRVVNEAGE 289 (579)
Q Consensus 264 ~~l~i~~~~~~d~G~y~C~a~n~~g~ 289 (579)
..|.|.++..+|+|.|+|.|.|..|.
T Consensus 134 ~~L~i~~v~~~d~G~Y~C~a~n~~g~ 159 (170)
T 3ry4_A 134 PTFSIPQANHSHSGDYHCTGNIGYTL 159 (170)
T ss_dssp CEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred CeEEEEeccccCCEEEEEEEEeCcCc
Confidence 67999999999999999999999885
No 244
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.80 E-value=5.9e-19 Score=161.31 Aligned_cols=180 Identities=13% Similarity=0.160 Sum_probs=121.7
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeC-----CCeeEEEECC--E---Eec---------CCCCEEEEEeCCEEEEEE
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHP-----LPTMTWQKDG--T---ELH---------ATEHYLITTVESVSTLEI 66 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~-----~~~v~W~~~g--~---~~~---------~~~~~~~~~~~~~~~L~i 66 (579)
.+.+...|..+.+.+|++++|.|.+.+.+ .+.+.|||++ . .+. ...++.........+|+|
T Consensus 15 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I 94 (268)
T 1x9q_A 15 DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKI 94 (268)
T ss_dssp CCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred cceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEE
Confidence 35567778899999999999999998776 4789999853 2 111 135666665667789999
Q ss_pred cCCCCCCCEEEEEEEEcCCee-eEEEEEEEEEecccCC---CCC--------------ceecCCCceEEccCCcEEEEEE
Q psy16852 67 INPTKEDIGVYTCKATNIGGV-ATCSANLIVLEKEESG---EAP--------------KFTKPLKPVIAEAQSPATLKAT 128 (579)
Q Consensus 67 ~~~~~~d~G~Y~C~~~~~~g~-~~~~~~~~v~~~~~~~---~~~--------------~~~~~~~~~~~~~g~~~~l~C~ 128 (579)
.+++.+|+|.|+|.+.+..+. ....+.|.|...+... .+| .....+....+.+|+.++|.|.
T Consensus 95 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~ 174 (268)
T 1x9q_A 95 NRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCV 174 (268)
T ss_dssp SSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEE
T ss_pred CCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEE
Confidence 999999999999999886542 2233566665432100 111 1222344678899999999999
Q ss_pred EEeecC--CeEEEEECC--EE---cc----------------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcC
Q psy16852 129 VTGRPT--PSICWYRGK--EE---IL----------------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNT 185 (579)
Q Consensus 129 ~~~~p~--~~i~W~~~~--~~---~~----------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 185 (579)
+.+.+. +.+.||++. .. +. ...+..+..+......+|.|.+++.+|+|.|+|.+.+.
T Consensus 175 ~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~ 254 (268)
T 1x9q_A 175 TSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGASY 254 (268)
T ss_dssp EESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred ecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence 987653 799999852 21 10 11233333332234578999999999999999999864
No 245
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.80 E-value=7.9e-20 Score=158.92 Aligned_cols=169 Identities=15% Similarity=0.112 Sum_probs=114.2
Q ss_pred CCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 184 (579)
+|.+...+. ..+.+|+.++|.|.+.+.|. .+.|+|++..+......... ......|.|.+++.+|+|.|+|.+.|
T Consensus 5 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C~a~n 79 (198)
T 1ugn_A 5 KPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQE---LVKKGQFPIPSITWEHTGRYRCYYGS 79 (198)
T ss_dssp CCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHH---HHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred CCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCcccccccccccc---CCcccEEEECCCCHHHCeEEEEEEEC
Confidence 455555444 37889999999999987665 79999998766321110000 01234799999999999999999999
Q ss_pred CC-cee--EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceE---
Q psy16852 185 TF-GRA--ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIE--- 258 (579)
Q Consensus 185 ~~-~~~--~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~--- 258 (579)
.. +.. .....+.|.. ...+|.+...+ ...+.+|+.++|.|.+.+. .+.+.|+++|..+......
T Consensus 80 ~~~g~~~~s~~~~l~V~~--------~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~ 149 (198)
T 1ugn_A 80 DTAGRSESSDPLELVVTG--------AYIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQP 149 (198)
T ss_dssp TTTEECCCCCCEEEEEEC--------SSCCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC--
T ss_pred CCCCcccCCccEEEEEcc--------cccCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccc
Confidence 76 522 2334444431 01244444433 2467899999999999887 6799999999877433211
Q ss_pred --EeCCeEEEEEcccCCCCCeEEEEEEEcCCe
Q psy16852 259 --TKDNVTKLVIKQTTKKTTGKYEIRVVNEAG 288 (579)
Q Consensus 259 --~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g 288 (579)
.......|.|.+++.+|+|.|+|.|.|..+
T Consensus 150 ~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~ 181 (198)
T 1ugn_A 150 HARGSSRAIFSVGPVSPSRRWWYRCYAYDSNS 181 (198)
T ss_dssp ----CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred cCCCcceeEEEecccCcccCeEEEEEEEeCCC
Confidence 112357899999999999999999999865
No 246
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.80 E-value=1.4e-18 Score=157.10 Aligned_cols=181 Identities=14% Similarity=0.173 Sum_probs=117.0
Q ss_pred cccCceeeeCCCCEEEEEEEEeeCCCe-----eEEEECCEEecC--------CCCE-------EEE---EeCCEEEEEEc
Q psy16852 11 EKIQPVVSHQEQPALFTCKVEGHPLPT-----MTWQKDGTELHA--------TEHY-------LIT---TVESVSTLEII 67 (579)
Q Consensus 11 ~~p~~~~v~~G~~~~l~C~~~~~~~~~-----v~W~~~g~~~~~--------~~~~-------~~~---~~~~~~~L~i~ 67 (579)
..|..+.+.+|++++|.|.+.+.|.+. +.|++++..... +... .+. ...+..+|.|.
T Consensus 8 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~ 87 (248)
T 3pv7_A 8 MAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLP 87 (248)
T ss_dssp STTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEES
T ss_pred eCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeC
Confidence 456778999999999999999887765 999996432110 0000 000 01124569999
Q ss_pred CCCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEe-ecCC-eEEEEECCEE
Q psy16852 68 NPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTP-SICWYRGKEE 145 (579)
Q Consensus 68 ~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~ 145 (579)
+++.+|+|.|+|.+.+..+.....+.|.|.. +|.+...+. .....|+.+.|.|.+.+ +|.+ .|.|++++..
T Consensus 88 ~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~------~P~v~~~~~-~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~ 160 (248)
T 3pv7_A 88 GIQLEEAGEYRCEVVVTPLKAQGTVQLEVVA------SPASRLLLD-QVGMKENEDKYMCESSGFYPEAINITWEKQTQK 160 (248)
T ss_dssp SCCGGGCEEEEEEEEETTEEEEEEEEEEEEB------CCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSS
T ss_pred CCCHHHCeEEEEEEEeCCccceeEEEEEEec------CCceEEecC-CccccCCCcEEEEEEccEECCCeEEEEEECCcc
Confidence 9999999999999999888877888888875 333333333 23446788889999988 7888 9999999864
Q ss_pred ccCCC------C-ceEEEcCCC---CeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852 146 ILPDN------G-HTMEFNPTT---GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198 (579)
Q Consensus 146 ~~~~~------~-~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~ 198 (579)
+.... . ......... ....|.|.....+|.|.|+|.|.|..+....+..+.+.
T Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~ 223 (248)
T 3pv7_A 161 FPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLT 223 (248)
T ss_dssp SCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC-
T ss_pred CCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEE
Confidence 43210 0 011111111 12568899999999999999999998865454444443
No 247
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.80 E-value=2.5e-18 Score=150.93 Aligned_cols=171 Identities=16% Similarity=0.269 Sum_probs=122.2
Q ss_pred ceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCC-----------------CCceEEEcCCCCeEEEEECcCCCCCCe
Q psy16852 114 PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPD-----------------NGHTMEFNPTTGECVLSISEATPQDEA 176 (579)
Q Consensus 114 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~i~~~~~~d~G 176 (579)
+..+.+|+.++|.|...+.+.+.+.||+++...... ...+.... ..++|.|.+++.+|+|
T Consensus 8 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~---~~~~L~i~~v~~~D~G 84 (208)
T 3r4d_A 8 PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY---SNGSLLFQMITMKDMG 84 (208)
T ss_dssp SSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEEC---TTSCEEECSCCGGGCE
T ss_pred cceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEe---cCCeEEEccccccCCe
Confidence 356779999999999877788899999875422110 01112221 1236999999999999
Q ss_pred EEEEEEEcCC-ceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccC
Q psy16852 177 VYSVKAVNTF-GRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSK 255 (579)
Q Consensus 177 ~Y~C~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~ 255 (579)
.|+|.+.+.. +.......+.|... ...|.+...... +.+|+.+.|.|.+.+.| +.+.|++++..+...
T Consensus 85 ~Y~C~~~~~~~~~~~~~~~l~V~~~--------~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~ 153 (208)
T 3r4d_A 85 VYTLDMTDENYRRTQATVRFHVHQP--------VTQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLT 153 (208)
T ss_dssp EEEEEEECSSCEEEEEEEEEEEECC--------CCCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCCC
T ss_pred EEEEEEEcccCceeEEEEEEEeccC--------CCCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCCC
Confidence 9999999985 44444455555311 123455444333 88899999999998866 799999999998755
Q ss_pred c-eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 256 D-IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299 (579)
Q Consensus 256 ~-~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~ 299 (579)
. .........|.|.++..+|+|.|+|.|.|..|... +..++|.
T Consensus 154 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~-s~~~~l~ 197 (208)
T 3r4d_A 154 ERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRR-SNSIKLD 197 (208)
T ss_dssp SSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEE-CCCEEEC
T ss_pred CCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCccc-CCceeee
Confidence 4 34444557899999999999999999999998754 3344443
No 248
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.80 E-value=9.8e-19 Score=154.10 Aligned_cols=170 Identities=16% Similarity=0.173 Sum_probs=120.1
Q ss_pred ceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECC--E---EccC-------CCCceEEEcCCCCeEEEEECcCCCCC
Q psy16852 107 KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGK--E---EILP-------DNGHTMEFNPTTGECVLSISEATPQD 174 (579)
Q Consensus 107 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~---~~~~-------~~~~~~~~~~~~~~~~l~i~~~~~~d 174 (579)
.+...+..+.+.+|+.++|.|.+.+.|.+.+.||++. . .+.. ....++......+..+|.|.+++.+|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 82 (213)
T 3nl4_L 3 VMTQTPASVSEPVGGTVTIKCQASQSISSYLAWYQQKPGQRPRLLIYETSTLASGVPSRFKGSGSGTDFTLTISDLECAD 82 (213)
T ss_dssp CEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGG
T ss_pred cEEeCCCeEEEcCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEeCCccCCCCCccEEEecCCCEEEEEECCCChHH
Confidence 3444566788999999999999998888999999842 1 1110 00122222234566789999999999
Q ss_pred CeEEEEEEEcCCce---eEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCCeEEEEECCE
Q psy16852 175 EAVYSVKAVNTFGR---AECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTPEVKWFKNGK 250 (579)
Q Consensus 175 ~G~Y~C~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~ 250 (579)
+|.|+|.+.+..+. ......+.+.. ...+|.+........+.+|+.++|.|.+.+ .|.+.+.|+++|.
T Consensus 83 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~--------~~~~p~v~~~~~~~~~~~g~~v~l~C~~~g~~P~~~v~W~k~g~ 154 (213)
T 3nl4_L 83 AATYYCQSTYENPTYVSFGGGTEVGVKG--------DPVAPTVLIFPPSADLVATGTVTIVCVANKYFPDVTVTWEVDGT 154 (213)
T ss_dssp CEEEEEEECCSSTTTCEECCCEEEEEEC--------CCBCCEEEEECCCHHHHTTSEEEEEEEEEEEBSCCEEEEEETTE
T ss_pred CEEEEEecCCCCceeEEeCCCeEEEEeC--------CCcCCeEEEeCCchhhccCCcEeEEEEEecccCCcEEEEEeCCc
Confidence 99999999987652 22233444432 124565554444444667999999999998 8988999999999
Q ss_pred EeccCc----------eEEeCCeEEEEEcccCCCCCeEEEEEEE
Q psy16852 251 EIVSKD----------IETKDNVTKLVIKQTTKKTTGKYEIRVV 284 (579)
Q Consensus 251 ~i~~~~----------~~~~~~~~~l~i~~~~~~d~G~y~C~a~ 284 (579)
.+.... .......+.|.|..+..+|.|.|+|.|.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~ 198 (213)
T 3nl4_L 155 TQTTGIENSKTPQNSADCTYNLSSTLTLTSTEYNSHKEYTCKVT 198 (213)
T ss_dssp ECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEE
T ss_pred cCCCCeecccCcccCCCCeEEEEEEEEecHHHcCCCCeEEEEEE
Confidence 886432 0111123579999999999999999998
No 249
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.79 E-value=3.3e-20 Score=166.13 Aligned_cols=179 Identities=11% Similarity=0.101 Sum_probs=101.0
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCE--Ee------------cCCCCEEEEEeCCEEEEEEcCCCC
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGT--EL------------HATEHYLITTVESVSTLEIINPTK 71 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~--~~------------~~~~~~~~~~~~~~~~L~i~~~~~ 71 (579)
.+.+...|.++.+.+|++++|.|.+.+.+.+.+.|||++. .+ ....++.........+|.|.+++.
T Consensus 23 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 102 (233)
T 3bqu_C 23 ETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLS 102 (233)
T ss_dssp CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----C
T ss_pred ceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCH
Confidence 3455666889999999999999999988778899998532 11 012233222233446899999999
Q ss_pred CCCEEEEEEEEcCCeee-EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCC--eEEEEECCEEccC
Q psy16852 72 EDIGVYTCKATNIGGVA-TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILP 148 (579)
Q Consensus 72 ~d~G~Y~C~~~~~~g~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~~~~ 148 (579)
+|+|.|+|.+.+..+.. .....+.|.... .+|.+...+......+|+.++|.|.+.+.+++ .|.|++++..+..
T Consensus 103 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~---~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~ 179 (233)
T 3bqu_C 103 EDVADYYCLQSDNLPYTFGGGTNLEIKRAD---AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQN 179 (233)
T ss_dssp CCCSEEEEEECSSSSCCBCCCCBC---CCC---BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----C
T ss_pred HHCEEEEEEEecCCceeecCCEEEEEeCCC---CCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCC
Confidence 99999999998865432 222345554321 23444432222233469999999999886543 7999999887654
Q ss_pred CCCceEEEc-CCCC----eEEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852 149 DNGHTMEFN-PTTG----ECVLSISEATPQDEAVYSVKAVNTFG 187 (579)
Q Consensus 149 ~~~~~~~~~-~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~ 187 (579)
......... ..++ .+.|.|..+..+|+|.|+|.|.|...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~ 223 (233)
T 3bqu_C 180 GVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS 223 (233)
T ss_dssp CEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred CceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 311100000 0111 24788999999999999999998643
No 250
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.79 E-value=3.5e-18 Score=151.66 Aligned_cols=177 Identities=16% Similarity=0.183 Sum_probs=116.8
Q ss_pred CCCceEEccCCcEEEEEEEEeecC-----CeEEEEECCEEccC---------C----CCceEEEc---CCCCeEEEEECc
Q psy16852 111 PLKPVIAEAQSPATLKATVTGRPT-----PSICWYRGKEEILP---------D----NGHTMEFN---PTTGECVLSISE 169 (579)
Q Consensus 111 ~~~~~~~~~g~~~~l~C~~~~~p~-----~~i~W~~~~~~~~~---------~----~~~~~~~~---~~~~~~~l~i~~ 169 (579)
+...+.+.+|+.+.|.|.+.+.|. ..+.|++++..+.. . ...+.... ...+..+|.|.+
T Consensus 7 p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~ 86 (222)
T 3sbw_C 7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITD 86 (222)
T ss_dssp SCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESS
T ss_pred CCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcC
Confidence 445677889999999999877663 48999997633211 0 01112111 123567899999
Q ss_pred CCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEEC-
Q psy16852 170 ATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKN- 248 (579)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~- 248 (579)
++.+|+|.|+|.+.+ .+.......+.|.. ++..........+.+|+.+.|.|.+.|.|.+.+.|+++
T Consensus 87 v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~-----------~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~ 154 (222)
T 3sbw_C 87 VKLQDAGVYRCMISY-GGADYKRITVKVNA-----------PYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSD 154 (222)
T ss_dssp CCGGGCEEEEEEEES-SSEEEEEEEEEEEB-----------CCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETT
T ss_pred cccccCeEEEEEEEe-CCCceeEEEEEEEC-----------CCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECC
Confidence 999999999999999 45555555555541 11111111112467899999999999999999999998
Q ss_pred CEEeccCceE--EeCCe---EEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 249 GKEIVSKDIE--TKDNV---TKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299 (579)
Q Consensus 249 ~~~i~~~~~~--~~~~~---~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~ 299 (579)
+..+...... ..... ....+..+...|.|.|+|.|.|..|....++.+.|.
T Consensus 155 g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~ 210 (222)
T 3sbw_C 155 HQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIP 210 (222)
T ss_dssp CCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECC
T ss_pred CceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEec
Confidence 6655433211 11111 122223456789999999999999988777666543
No 251
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.79 E-value=6.1e-18 Score=144.27 Aligned_cols=161 Identities=14% Similarity=0.126 Sum_probs=116.1
Q ss_pred eeeeCCCCEEEEEEEEeeCCC--eeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEE
Q psy16852 16 VVSHQEQPALFTCKVEGHPLP--TMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSAN 93 (579)
Q Consensus 16 ~~v~~G~~~~l~C~~~~~~~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~ 93 (579)
+.|.+|++++|+|.+ +.|.| .|+|++.+..+ .+ .........|.|.+++.+|+|.|.|.+.+..+.....+.
T Consensus 17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~--~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ 90 (210)
T 1gsm_A 17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GA--VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQ 90 (210)
T ss_dssp EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CC--EEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---Cc--EEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEE
Confidence 699999999999999 88877 99999965443 12 223456789999999999999999999999888888899
Q ss_pred EEEEecccCCCCCceec-CCCceEEccCCcEEEEEEEEee-cC----CeEEEEECCEEccCCCCce--EEE----c--CC
Q psy16852 94 LIVLEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGR-PT----PSICWYRGKEEILPDNGHT--MEF----N--PT 159 (579)
Q Consensus 94 ~~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~-p~----~~i~W~~~~~~~~~~~~~~--~~~----~--~~ 159 (579)
|+|+..| .... .+. .+.+|+.+ |.|.+.+. |. +.|.|||++..+....... ... . ..
T Consensus 91 ltV~~~P------~~~~i~~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~ 161 (210)
T 1gsm_A 91 LLVYAFP------NQLTVSPA--ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDE 161 (210)
T ss_dssp EEEEBCC------SEEEEESS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCC
T ss_pred EEEEecC------CCcEEccc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCc
Confidence 9998643 2221 121 45678888 99999875 53 4899999999985432111 110 0 01
Q ss_pred CC----eEEEEECcCCCCCCeEEEEEEEcCCceeEE
Q psy16852 160 TG----ECVLSISEATPQDEAVYSVKAVNTFGRAEC 191 (579)
Q Consensus 160 ~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 191 (579)
.. .++|.+.....+|.+.|+|+|.+.......
T Consensus 162 ~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~~~~ 197 (210)
T 1gsm_A 162 DVLFRVTERWRLPPLGTPVPPALYCQATMRLPGLEL 197 (210)
T ss_dssp CCCEEEEEEEECCCCCSSCCSEEEEEEEEEETTEEE
T ss_pred ceEEEEEEEEeecCCcccCCceEEEEEEeeCCCCcc
Confidence 11 245666677778889999999887654443
No 252
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.79 E-value=6.7e-18 Score=149.52 Aligned_cols=180 Identities=13% Similarity=0.158 Sum_probs=118.9
Q ss_pred cccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--E---Eec--------------CCCCEEEEEe--CCEEEEEEc
Q psy16852 11 EKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--T---ELH--------------ATEHYLITTV--ESVSTLEII 67 (579)
Q Consensus 11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~---~~~--------------~~~~~~~~~~--~~~~~L~i~ 67 (579)
..|.++.+.+|++++|.|.+.+.+ .+.+.|||.. . .+. ...++.+... .+..+|+|.
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 84 (223)
T 1dee_B 5 VESGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMN 84 (223)
T ss_dssp EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred EcCCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEEC
Confidence 456789999999999999998764 3689999843 1 110 1245555543 246899999
Q ss_pred CCCCCCCEEEEEEEEcCCe------eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cCC-eEEE
Q psy16852 68 NPTKEDIGVYTCKATNIGG------VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP-SICW 139 (579)
Q Consensus 68 ~~~~~d~G~Y~C~~~~~~g------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W 139 (579)
+++.+|+|.|+|.+.+..| .....+.|.|...+ ..+|.+........+.+|+.++|.|.+.+. |.+ .+.|
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W 162 (223)
T 1dee_B 85 SLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGS--ASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSW 162 (223)
T ss_dssp SCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSC--CBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEE
T ss_pred CCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCC--CCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEe
Confidence 9999999999999998642 11234567776321 123443321111234689999999999887 666 9999
Q ss_pred EE-CCEEccCCCCc-eEEEcC-CCCeEEEEECcCCC--CCCeEEEEEEEcCCceeEEE
Q psy16852 140 YR-GKEEILPDNGH-TMEFNP-TTGECVLSISEATP--QDEAVYSVKAVNTFGRAECR 192 (579)
Q Consensus 140 ~~-~~~~~~~~~~~-~~~~~~-~~~~~~l~i~~~~~--~d~G~Y~C~~~~~~~~~~~~ 192 (579)
++ ++..+...... ....+. ....+.|.|..... +|.|.|+|.+.|..+.....
T Consensus 163 ~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~ 220 (223)
T 1dee_B 163 KYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKD 220 (223)
T ss_dssp EETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEE
T ss_pred EccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCccc
Confidence 99 77766430000 000000 00124688888776 88999999999998865543
No 253
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.79 E-value=1.9e-19 Score=154.36 Aligned_cols=154 Identities=14% Similarity=0.194 Sum_probs=108.5
Q ss_pred EccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECc-CCCCCCeEEEEEEEcCCceeEEEEEE
Q psy16852 117 AEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISE-ATPQDEAVYSVKAVNTFGRAECRANL 195 (579)
Q Consensus 117 ~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~~~~~~ 195 (579)
..+|+.+.|.|.+.+ +. .|.|+|++..+.... ..+|.|.+ ++.+|+|.|+|.|.|..|.......+
T Consensus 11 ~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~~-----------~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~ 77 (186)
T 1jbj_A 11 SISGTSVELTCPLDS-DE-NLKWEKNGQELPQKH-----------DKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKA 77 (186)
T ss_dssp EEETTEEEEECSSCC-CT-TCEEEETTEEECSCC-----------CSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECC
T ss_pred EeCCcEEEEEEeCCC-CC-ceEEEECCEECCCCC-----------CCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEE
Confidence 357999999999876 44 499999999886541 12699999 99999999999999998874444433
Q ss_pred EEeeccccCC-------CCccCCCeEecc----CCc---eeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeC
Q psy16852 196 VLRKATTIDK-------PRVLEAPTIVRP----LQA---LLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKD 261 (579)
Q Consensus 196 ~v~~~~~~~~-------~~~~~~p~~~~~----~~~---~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~ 261 (579)
.+........ .....+|.+... ... ..+.+|+.+.|.|.+ |.+.+.|+++|..+.... .
T Consensus 78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~----~ 150 (186)
T 1jbj_A 78 RVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLN----A 150 (186)
T ss_dssp CCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSS----C
T ss_pred EEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccC----C
Confidence 3322111100 000001110000 000 124589999999987 788999999999986433 2
Q ss_pred CeEEEEEcccCCCCCeEEEEEEEcCCeee
Q psy16852 262 NVTKLVIKQTTKKTTGKYEIRVVNEAGEA 290 (579)
Q Consensus 262 ~~~~l~i~~~~~~d~G~y~C~a~n~~g~~ 290 (579)
....|.|.++..+|+|.|+|.|.|..|..
T Consensus 151 ~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 151 TKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 44679999999999999999999998865
No 254
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.79 E-value=4.3e-18 Score=149.70 Aligned_cols=180 Identities=13% Similarity=0.182 Sum_probs=121.9
Q ss_pred EEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEEC--CEEc------------cCCCeEEEEECCCC
Q psy16852 297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHD--GTPM------------KEGKEVTIYQDTDG 362 (579)
Q Consensus 297 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~--~~~~------------~~~~~~~~~~~~~~ 362 (579)
.+.+..|..+.|.|.+. |.+.+.|+++ +..+ ....++.... ..+
T Consensus 9 ~~~v~~G~~v~L~C~~~---------------------~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~ 66 (211)
T 3tv3_L 9 SASGSPGQSITISCTGT---------------------SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSK-SGN 66 (211)
T ss_dssp EEEECTTCEEEEEEECC---------------------CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-ETT
T ss_pred eEEEcCCCCEEEEEEEC---------------------CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEc-cCC
Confidence 45677888888888754 3345566552 1111 1223444433 445
Q ss_pred eEEEEEcccCCCCCEEEEEEEEcCce--eEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeC--CCe
Q psy16852 363 LCKLAISEVFPENAGLYSCTAVNPVG--EAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP--TPS 438 (579)
Q Consensus 363 ~~~l~i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~ 438 (579)
.++|.|.+++.+|+|.|+|.|.|..+ .....+.|.|.. ....+|.+...+....+..|+.++|.|.+.|.+ .+.
T Consensus 67 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~--~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~ 144 (211)
T 3tv3_L 67 TASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLG--QPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVT 144 (211)
T ss_dssp EEEEEEESCCGGGCEEEEEEEEETTTEEEECCCEEEEECC--SCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCE
T ss_pred EEEEEECCCChhHCEEEEEEEecCCCceeECCCceEEEeC--CCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeE
Confidence 67899999999999999999999887 344456777763 222467776555444455899999999999864 469
Q ss_pred EEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEE
Q psy16852 439 ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAE 518 (579)
Q Consensus 439 v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~ 518 (579)
+.|+++|..+..+.. .........|.|... +.|.|.++..+|+|.|+|.|.
T Consensus 145 v~W~k~g~~l~~~~~---------------~~~~~~~~~~~~~~~--------------s~L~i~~~~~~d~g~Y~C~v~ 195 (211)
T 3tv3_L 145 VAWKADSSPVKAGVE---------------TTTPSKQSNNKYAAS--------------SYLSLTPEQWKSHRSYSCQVT 195 (211)
T ss_dssp EEEEETTEEECTTEE---------------ECCCEECTTSSEEEE--------------EEEEECHHHHHHSSCEEEEEE
T ss_pred EEEEECCeecCCCcc---------------cCCceECCCCCEEEE--------------EEEEEcHHHhCCCCeEEEEEE
Confidence 999999998854211 111112233444322 459999999999999999999
Q ss_pred eCCeeEEEEEE
Q psy16852 519 NVAGSVTCTAT 529 (579)
Q Consensus 519 n~~g~~~~~~~ 529 (579)
|..|....++.
T Consensus 196 ~~~~~~~~~~~ 206 (211)
T 3tv3_L 196 HEGSTVEKTVA 206 (211)
T ss_dssp ETTEEEEEEEC
T ss_pred ECCCCEEeecc
Confidence 99987766554
No 255
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.79 E-value=6.2e-18 Score=148.77 Aligned_cols=145 Identities=15% Similarity=0.160 Sum_probs=97.2
Q ss_pred CeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEE-EEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEE
Q psy16852 352 KEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAV-AAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKAT 430 (579)
Q Consensus 352 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~ 430 (579)
.++.... ..+.+.|.|.++..+|+|.|+|.|.|..+... ....|.|... ...+|.+...+.......|+.++|.|.
T Consensus 62 ~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~--~~~~P~v~~~~~~~~~~~g~~v~L~C~ 138 (212)
T 1q0x_L 62 ARFSGSL-IGDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQ--PKSSPTVTLFPPSSEELSTAKATLVCT 138 (212)
T ss_dssp TTEEEEE-ETTEEEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECCS--CCBCCEEEEECCCHHHHTTTEEEEEEE
T ss_pred ccEEEEe-eCCEEEEEECCCCccCCEEEEEEEecCchhhcCCCeEEEEecC--CCCCCeeEEeCCCHHHccCCcEEEEEE
Confidence 3444333 34556899999999999999999999876432 3345666432 113666665333334457899999999
Q ss_pred EEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccc
Q psy16852 431 VTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRD 508 (579)
Q Consensus 431 ~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~ 508 (579)
+.|.+++ .|.|+++|..+..+... ........|.|.. .+.|.|..+..+
T Consensus 139 ~~g~~p~~~~v~W~k~g~~l~~~~~~---------------~~~~~~~~g~~~~--------------~s~L~i~~~~~~ 189 (212)
T 1q0x_L 139 ITDFYPGVVTVDWKVDGTPVTAGMET---------------TQPSKQSNNKYMA--------------SSYLTLTARAWE 189 (212)
T ss_dssp EEEEBSSCCEEEEEETTEEECTTEEE---------------CCCEECTTSCEEE--------------EEEEEEEHHHHT
T ss_pred EEEEeCCCeEEEEEECCEeCCCCeec---------------CCceeCCCCCEEE--------------EEEEEEcHHHcc
Confidence 9986544 89999999988543110 1111122333432 245999999999
Q ss_pred cceeEEEEEEeCCeeEEEEE
Q psy16852 509 QIGDVTCRAENVAGSVTCTA 528 (579)
Q Consensus 509 d~G~Y~C~a~n~~g~~~~~~ 528 (579)
|+|.|+|.|.|..+....++
T Consensus 190 d~g~Y~C~a~n~~~~~~~~v 209 (212)
T 1q0x_L 190 RHSSYSCQVTHEGHSSNKTL 209 (212)
T ss_dssp TCCEEEEEEEETTEEEEEEE
T ss_pred CCCcEEEEEEeCCcceeeee
Confidence 99999999999877654443
No 256
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.79 E-value=2.7e-19 Score=159.28 Aligned_cols=179 Identities=18% Similarity=0.180 Sum_probs=119.0
Q ss_pred cccCceeeeCCCCEEEEEEEEeeCCC---eeEEEECCEEecC----------------CCCEEE-------EEeCCEEEE
Q psy16852 11 EKIQPVVSHQEQPALFTCKVEGHPLP---TMTWQKDGTELHA----------------TEHYLI-------TTVESVSTL 64 (579)
Q Consensus 11 ~~p~~~~v~~G~~~~l~C~~~~~~~~---~v~W~~~g~~~~~----------------~~~~~~-------~~~~~~~~L 64 (579)
..|+++.+..|++++|.|.+.+.+.+ .|.|+|++..+.. ..+... .......+|
T Consensus 6 ~vp~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL 85 (225)
T 4fmk_A 6 RVLPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATL 85 (225)
T ss_dssp ECCSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCE
T ss_pred EeCCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEE
Confidence 34677899999999999999876665 4899997643310 011111 011234679
Q ss_pred EEcCCCCCCCEEEEEEEEcCCeeeEE-EEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEEC
Q psy16852 65 EIINPTKEDIGVYTCKATNIGGVATC-SANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRG 142 (579)
Q Consensus 65 ~i~~~~~~d~G~Y~C~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~ 142 (579)
.|.+++.+|+|.|+|.+.+..+.... ...+.+.. ++.....+.......++.+.+.|.. .+.|++.+.|+++
T Consensus 86 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~ 159 (225)
T 4fmk_A 86 AFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIA------QPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISS 159 (225)
T ss_dssp EECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEB------CCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECS
T ss_pred EEccCCHHHCcceEEEEEeCCCcceeeeeeeeeec------CCceeecccceeecceeeeeeeeeecCCCCCCEEEEEEC
Confidence 99999999999999999887654443 33334432 2233333334445567778887776 5677899999998
Q ss_pred CEEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852 143 KEEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198 (579)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~ 198 (579)
+..+.... ......++ .+.|.|.++..+|+|.|+|.|.|..+....+..+.+.
T Consensus 160 ~~~~~~~~---~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~ 216 (225)
T 4fmk_A 160 LGGEAKDT---QEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLS 216 (225)
T ss_dssp SCCEEEEE---EEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred CccccCCc---ceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEE
Confidence 76543211 11111112 2469999999999999999999998877666666554
No 257
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.79 E-value=1.7e-18 Score=132.17 Aligned_cols=93 Identities=28% Similarity=0.517 Sum_probs=81.7
Q ss_pred CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS 485 (579)
Q Consensus 406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 485 (579)
.||.|...+.+..+.+|+.+.|.|.+.|.|.|+|.|+|+|..|..+.++.+.
T Consensus 12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~---------------------------- 63 (107)
T 3knb_B 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFP---------------------------- 63 (107)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECC----------------------------
T ss_pred CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEe----------------------------
Confidence 4788888888899999999999999999999999999999999877665542
Q ss_pred cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.++..+.|.|.+++.+|+|.|+|.|.|.+|....++.|.|+
T Consensus 64 -------~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 104 (107)
T 3knb_B 64 -------ADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVL 104 (107)
T ss_dssp -------EETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred -------ecCceEEEEEecCChhhCEEEEEEEEECCCEEEEEEEEEEE
Confidence 24456679999999999999999999999999999999976
No 258
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.79 E-value=6.6e-18 Score=149.19 Aligned_cols=175 Identities=12% Similarity=0.183 Sum_probs=119.9
Q ss_pred cccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--E---Eec--------------CCCCEEEEEe--CCEEEEEEc
Q psy16852 11 EKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--T---ELH--------------ATEHYLITTV--ESVSTLEII 67 (579)
Q Consensus 11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~---~~~--------------~~~~~~~~~~--~~~~~L~i~ 67 (579)
.+|.++.+.+|++++|.|.+.+.+ .+.+.|||.. . .+. ...++.+... .+..+|+|.
T Consensus 5 ~q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 84 (220)
T 2fbj_H 5 LESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMS 84 (220)
T ss_dssp EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEEC
T ss_pred ecCCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEEC
Confidence 456779999999999999998755 4689999843 1 110 1245555543 356799999
Q ss_pred CCCCCCCEEEEEEEEcCCee---eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC--CeEEEEE
Q psy16852 68 NPTKEDIGVYTCKATNIGGV---ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT--PSICWYR 141 (579)
Q Consensus 68 ~~~~~d~G~Y~C~~~~~~g~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--~~i~W~~ 141 (579)
+++.+|+|.|+|.+.+..+. ....+.|.|...+ ..+|.+.... ...+.+|+.++|.|.+.+. |. +.|.|++
T Consensus 85 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~--~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~ 161 (220)
T 2fbj_H 85 KVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAES--ARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGK 161 (220)
T ss_dssp SCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSC--CBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESC
T ss_pred CCChhhCEEEEEEEeccccccceecCCEEEEecCCC--CCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEec
Confidence 99999999999999986542 2234567776432 1234443322 3335689999999999887 66 6999999
Q ss_pred CCEEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeE
Q psy16852 142 GKEEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAE 190 (579)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 190 (579)
++..+..... ..... .++ .+.|.|......|.|.|+|.+.|..+...
T Consensus 162 ~~~~~~~~~~-~~~~~-~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~ 212 (220)
T 2fbj_H 162 SGKDITTVNF-PPALA-SGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ 212 (220)
T ss_dssp CCSSCEEEEC-CCEEC-SSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred CCEecceEec-CceEC-CCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence 8865411000 00011 112 13589999999999999999999887643
No 259
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.79 E-value=3.4e-19 Score=155.86 Aligned_cols=177 Identities=16% Similarity=0.183 Sum_probs=112.4
Q ss_pred ccccccCcee-eeCCCCEEEEEEEEeeC---C-CeeEEEECCEEecCCCCE-EEEEeC----CEEEEEEcCCCCCCCEEE
Q psy16852 8 RFIEKIQPVV-SHQEQPALFTCKVEGHP---L-PTMTWQKDGTELHATEHY-LITTVE----SVSTLEIINPTKEDIGVY 77 (579)
Q Consensus 8 ~~~~~p~~~~-v~~G~~~~l~C~~~~~~---~-~~v~W~~~g~~~~~~~~~-~~~~~~----~~~~L~i~~~~~~d~G~Y 77 (579)
.++.+|.... +.+|++++|.|.+.+.+ . ..|.|+|++..+...... ...... ....|.|.+++.+|+|.|
T Consensus 4 v~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y 83 (207)
T 2vol_A 4 VFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEF 83 (207)
T ss_dssp EEEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCE
T ss_pred EEEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEE
Confidence 3444555554 89999999999999884 2 489999999776432100 000111 135799999999999999
Q ss_pred EEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC-CeEEEEECCEEccCCCCceEE
Q psy16852 78 TCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT-PSICWYRGKEEILPDNGHTME 155 (579)
Q Consensus 78 ~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~ 155 (579)
+|.|.|..+.......+.+ ......+|.+...+......+|+.++|.|.+.|+ |+ +.|.|++++..+.........
T Consensus 84 ~C~a~~~~~~~~~~~~v~~--~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~ 161 (207)
T 2vol_A 84 KCRVNSAAFPAPIEKTISK--TKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPI 161 (207)
T ss_dssp EEEEECTTCSSCEEEEECC--CCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCE
T ss_pred EEEEEccCCCCceEEEecc--CCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCce
Confidence 9999998775322222221 0011234444332222222359999999999885 44 499999999987432211111
Q ss_pred EcCCCCe----EEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852 156 FNPTTGE----CVLSISEATPQDEAVYSVKAVNTFG 187 (579)
Q Consensus 156 ~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~ 187 (579)
.. .++. ..|.|.....+|.|.|+|.|.|...
T Consensus 162 ~~-~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l 196 (207)
T 2vol_A 162 MD-TDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL 196 (207)
T ss_dssp EC-TTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred EC-CCCCEEEEEEEEECHHHcCCCCEEEEEEECCCC
Confidence 11 1221 3466766666789999999999864
No 260
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.78 E-value=1.5e-18 Score=153.70 Aligned_cols=177 Identities=16% Similarity=0.203 Sum_probs=120.0
Q ss_pred cccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--EE---ec----------------CCCCEEEEEe--CCEEEEE
Q psy16852 11 EKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--TE---LH----------------ATEHYLITTV--ESVSTLE 65 (579)
Q Consensus 11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~~---~~----------------~~~~~~~~~~--~~~~~L~ 65 (579)
..|.++.+.+|++++|.|.+.+.+ .+.+.|||++ .. +. ...++.+... .+..+|+
T Consensus 5 ~~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 84 (220)
T 1pz5_B 5 EESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQ 84 (220)
T ss_dssp EEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred eccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEE
Confidence 457889999999999999998765 5789999953 11 10 0245555443 3467999
Q ss_pred EcCCCCCCCEEEEEEEEcCCeee-E--EEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cCC-eEEEE
Q psy16852 66 IINPTKEDIGVYTCKATNIGGVA-T--CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP-SICWY 140 (579)
Q Consensus 66 i~~~~~~d~G~Y~C~~~~~~g~~-~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~ 140 (579)
|.+++.+|+|.|+|.+.+..+.. . ..+.+.|...+ ..+|.+........+.+|+.++|.|.+.+. |.+ .|.|+
T Consensus 85 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~ 162 (220)
T 1pz5_B 85 MNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSAT--TTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWN 162 (220)
T ss_dssp ECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSC--CBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEG
T ss_pred EccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCC--CCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEe
Confidence 99999999999999999875321 1 34566665321 223444332222335689999999999887 888 99999
Q ss_pred ECCEEcc--CCCCceEEEc-CCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEE
Q psy16852 141 RGKEEIL--PDNGHTMEFN-PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECR 192 (579)
Q Consensus 141 ~~~~~~~--~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 192 (579)
+++.... ..... ... .....+.|.|..+..+| |.|+|.|.|..+....+
T Consensus 163 ~~~~~~~~~~~~~~--~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~ 214 (220)
T 1pz5_B 163 YGALSSGVRTVSSV--LQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLI 214 (220)
T ss_dssp GGTCCTTEEECCCE--EETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred cCCcccceEEcCCc--ccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeee
Confidence 9876310 00000 000 00013578999988877 99999999998865443
No 261
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.78 E-value=5.6e-18 Score=153.00 Aligned_cols=159 Identities=13% Similarity=0.163 Sum_probs=101.2
Q ss_pred CeEEEEEC-CCCeEEEEEcccCCCCCEEEEEEEEcCcee--EEEEEEEEEEeccc---------CCCCCeeecCCCceee
Q psy16852 352 KEVTIYQD-TDGLCKLAISEVFPENAGLYSCTAVNPVGE--AVAAATLAVEEKEE---------SGEAPKFTKPLKPVIA 419 (579)
Q Consensus 352 ~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l~v~~~~~---------~~~~p~~~~~~~~~~~ 419 (579)
.++.+..+ ..+..+|.|.++..+|+|.|+|.|.|..+. ......|.|...+. ...++.+...+....+
T Consensus 68 ~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 147 (247)
T 2ghw_B 68 GRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSL 147 (247)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEE
T ss_pred CcEEEEEeCCCCEEEEEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEe
Confidence 45555443 345678999999999999999999997432 22345677764311 1124556556667789
Q ss_pred ecCCCeEEEEEEEeeCCCeEEEee--CCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCe
Q psy16852 420 EAQSPATLKATVTGRPTPSICWYR--GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR 497 (579)
Q Consensus 420 ~~g~~~~l~C~~~g~p~~~v~W~~--~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~ 497 (579)
.+|+.++|.|.+.+.|.+.+.|+| ++..+. .+.. .... ......++ +.+..++..
T Consensus 148 ~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~-----~~~~--~~~~-------~~~~~~~r---------~~~~~~~~~ 204 (247)
T 2ghw_B 148 SPGERATLSCRASQSVRSNLAWYQQKPGQAPR-----PLIY--DAST-------RATGIPDR---------FSGSGSGTD 204 (247)
T ss_dssp CTTSCEEEEEEESSCCTTCEEEEEECTTSCCE-----EEEE--TTTE-------ECTTCCTT---------EEEECSSSE
T ss_pred cCCCcEEEEEEeCCCccceEEEEEECCCCCcE-----EEEE--Eecc-------CCCccCCC---------EEEecCCCe
Confidence 999999999999999999999999 443220 0000 0000 00000111 222334556
Q ss_pred eEEEEeecccccceeEEEEEEeCCeeE-EEEEEEEEe
Q psy16852 498 SVLLISKITRDQIGDVTCRAENVAGSV-TCTATLSLL 533 (579)
Q Consensus 498 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~ 533 (579)
+.|+|.+++.+|+|.|+|.|.|..+.. ...+.|.|.
T Consensus 205 ~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 205 FTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp EEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred EEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence 779999999999999999999864432 234456654
No 262
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.78 E-value=2.1e-18 Score=130.04 Aligned_cols=94 Identities=22% Similarity=0.436 Sum_probs=85.7
Q ss_pred CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCC--CCEEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHAT--EHYLITTVESVSTLEIINPTKEDIGVYTCKA 81 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (579)
.+||+|...|.++.+.+|+.+.|.|.+.|.|.|.++|+|||..+... .++.+...++..+|.|.+++.+|+|.|+|.|
T Consensus 3 ~~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 82 (100)
T 3knb_A 3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSL 82 (100)
T ss_dssp CEEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEE
Confidence 57899999999999999999999999999999999999999998754 3677777777889999999999999999999
Q ss_pred EcCCeeeEEEEEEEEE
Q psy16852 82 TNIGGVATCSANLIVL 97 (579)
Q Consensus 82 ~~~~g~~~~~~~~~v~ 97 (579)
.|..|....++.|.|.
T Consensus 83 ~N~~G~~~~~~~l~V~ 98 (100)
T 3knb_A 83 GNEFGSDSATVNIHIR 98 (100)
T ss_dssp EETTEEEEEEEEEEEE
T ss_pred EECCCEEEEEEEEEEE
Confidence 9999999888888885
No 263
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=99.78 E-value=2.2e-18 Score=152.87 Aligned_cols=174 Identities=13% Similarity=0.219 Sum_probs=117.8
Q ss_pred cccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--EE---e--------------cCCCCEEEEEe--CCEEEEEEc
Q psy16852 11 EKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--TE---L--------------HATEHYLITTV--ESVSTLEII 67 (579)
Q Consensus 11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~~---~--------------~~~~~~~~~~~--~~~~~L~i~ 67 (579)
.+|..+.+.+|++++|.|.+.+.+ .+.+.|||+. .. + ....++.+... .+..+|+|.
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 84 (225)
T 1op3_H 5 VESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMH 84 (225)
T ss_dssp EEECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred EcCCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEEC
Confidence 457778999999999999998765 5689999853 21 1 01245655543 356899999
Q ss_pred CCCCCCCEEEEEEEEcCCe-----e---eEEEEEEEEEecccCCCCCceec-CCCceEEccCCcEEEEEEEEee-cCC-e
Q psy16852 68 NPTKEDIGVYTCKATNIGG-----V---ATCSANLIVLEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGR-PTP-S 136 (579)
Q Consensus 68 ~~~~~d~G~Y~C~~~~~~g-----~---~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~-p~~-~ 136 (579)
+++.+|+|.|+|.+.+..| . ....+.|.|...+ ..+|.+.. .+.. .+.+|+.++|.|.+.+. |.+ .
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~--~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~ 161 (225)
T 1op3_H 85 KMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPAS--TKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPVT 161 (225)
T ss_dssp SCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCS--CBCCEEEEECCCT-TCCCCCEEEEEEEEEEEBSSCCE
T ss_pred CCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCC--CcCCeEEEecccc-cccCCCcEEEEEEEEeEECCCeE
Confidence 9999999999999998754 2 1234567776421 12343332 2222 24679999999999886 665 9
Q ss_pred EEEEECCEEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeE
Q psy16852 137 ICWYRGKEEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAE 190 (579)
Q Consensus 137 i~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 190 (579)
|.|++++..+........ .. .++ .+.|.|..+..+| |.|+|.|.|..+...
T Consensus 162 v~W~~~~~~~~~~~~~~~-~~-~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~ 216 (225)
T 1op3_H 162 VSWNSGALTSGVHTFPAV-LQ-SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK 216 (225)
T ss_dssp EECCTTSCCTTCEECCCE-EC-TTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred EEEecCCCcCCeEecCce-eC-CCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCcc
Confidence 999998865321100001 11 112 2468999998888 999999999766443
No 264
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.78 E-value=2e-18 Score=152.75 Aligned_cols=178 Identities=19% Similarity=0.213 Sum_probs=117.7
Q ss_pred eecCCCceEEccCCcEEEEEEEEee-cCCeEEEEECC---EE-------------ccCCCCceEEEcCCCCeEEEEECcC
Q psy16852 108 FTKPLKPVIAEAQSPATLKATVTGR-PTPSICWYRGK---EE-------------ILPDNGHTMEFNPTTGECVLSISEA 170 (579)
Q Consensus 108 ~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~~---~~-------------~~~~~~~~~~~~~~~~~~~l~i~~~ 170 (579)
+...+ .+.+.+|+.++|.|.+.+. |.+.+.||+.. .. .......++......+..+|.|.++
T Consensus 4 v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 82 (218)
T 3s96_B 4 LTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNI 82 (218)
T ss_dssp EECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSC
T ss_pred EEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccC
Confidence 44445 7788999999999999988 88999999832 10 0011111222222445678999999
Q ss_pred CCCCCeEEEEEEEcCCc---eeE--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCC-eE
Q psy16852 171 TPQDEAVYSVKAVNTFG---RAE--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTP-EV 243 (579)
Q Consensus 171 ~~~d~G~Y~C~~~~~~~---~~~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v 243 (579)
+.+|+|.|+|.+.+..+ ... ....+.|... ...+|.+...+.......|+.++|.|.+.+ .|.+ .+
T Consensus 83 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~-------~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v 155 (218)
T 3s96_B 83 QPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQ-------PKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTV 155 (218)
T ss_dssp CGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESC-------CCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEE
T ss_pred CcccCEEEEEEEecCCCCceeEEEcCcEEEEEecC-------CCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEE
Confidence 99999999999988765 112 2234444311 113455554333334456789999999998 5766 89
Q ss_pred EEEECCEEeccCc-----e---EEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEE
Q psy16852 244 KWFKNGKEIVSKD-----I---ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTS 293 (579)
Q Consensus 244 ~W~~~~~~i~~~~-----~---~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~ 293 (579)
.|+++|..+.... . ......+.|.|.....+|.|.|+|.|.|..+....+
T Consensus 156 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~ 213 (218)
T 3s96_B 156 AWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKS 213 (218)
T ss_dssp EEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEE
T ss_pred EEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccccc
Confidence 9999999886532 0 001112458888888889999999999998765543
No 265
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.78 E-value=1e-19 Score=158.30 Aligned_cols=151 Identities=18% Similarity=0.272 Sum_probs=104.0
Q ss_pred eeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 18 SHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVL 97 (579)
Q Consensus 18 v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~ 97 (579)
+.+|++++|.|.+ |.+.|.|+|+|..+... .....+|.|.+++.+|+|.|+|.+.+..+ ..+.+.+.
T Consensus 15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~-------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s---~~~~v~v~ 81 (204)
T 1sy6_A 15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL-------TEDKKKWNLGSNAKDPRGMYQCKGSQNKS---KPLQVYYR 81 (204)
T ss_dssp CCSSSEEEEEECS---CSSEEEEEETTEEEEEE-------ESSCCCEEEEEGGGCCEEEEEEESSSSCC---CCEEEEEE
T ss_pred ecCCCeEEEEEcC---CCCEEEEEECCEECCCC-------CCCCCeEEeCCCCcCCCEEEEEEecCCCC---eeEEEEEE
Confidence 4689999999998 67799999999987532 12346799999999999999999754322 12344443
Q ss_pred ec------c------------------c-CCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCC-C
Q psy16852 98 EK------E------------------E-SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN-G 151 (579)
Q Consensus 98 ~~------~------------------~-~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-~ 151 (579)
.. . . ...++.+...+ .....+|+.++|.|. +.|.+.|.|++++..+.... .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~ 158 (204)
T 1sy6_A 82 MGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTP-YKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDD 158 (204)
T ss_dssp C------------------------------------CCC-CEEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTTC
T ss_pred EeccccccccccccccccccccccccccccccccceecCC-ceeeecCCcEEEEcC--CCCCCceEEEECCEECCCccCC
Confidence 00 0 0 00011222112 222238999999999 78889999999999876542 2
Q ss_pred ceEEEcCCCCeEEEEECcC-CCCCCeEEEEEEEcCCce
Q psy16852 152 HTMEFNPTTGECVLSISEA-TPQDEAVYSVKAVNTFGR 188 (579)
Q Consensus 152 ~~~~~~~~~~~~~l~i~~~-~~~d~G~Y~C~~~~~~~~ 188 (579)
..+... ...|.|.++ +.+|+|.|+|.|.|..|.
T Consensus 159 ~~~~~~----~~~L~I~~v~~~~D~G~Y~C~A~N~~g~ 192 (204)
T 1sy6_A 159 KNIGSD----EDHLSLKEFSELEQSGYYVCYPRGSKPE 192 (204)
T ss_dssp TTEEEE----TTEEEETTCCHHHHCEEEEEEETTSCGG
T ss_pred ceEecC----CCEEEEeeCCccccCEEEEEEeccCCCC
Confidence 222211 247999999 999999999999999885
No 266
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=99.78 E-value=2.9e-18 Score=152.27 Aligned_cols=182 Identities=14% Similarity=0.139 Sum_probs=116.8
Q ss_pred cccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--EE---e---c-----------CCCCEEEEEe--CCEEEEEEc
Q psy16852 11 EKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--TE---L---H-----------ATEHYLITTV--ESVSTLEII 67 (579)
Q Consensus 11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~~---~---~-----------~~~~~~~~~~--~~~~~L~i~ 67 (579)
..|.++.+.+|++++|.|.+.+.+ .+.+.|||++ .. + . ...++.+... .+..+|+|.
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 84 (227)
T 1mju_H 5 QQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLS 84 (227)
T ss_dssp ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred cCCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEEC
Confidence 457788999999999999998765 5689999953 21 1 1 1245555443 357899999
Q ss_pred CCCCCCCEEEEEEEEcCCeee-EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cCC-eEEEEECCE
Q psy16852 68 NPTKEDIGVYTCKATNIGGVA-TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP-SICWYRGKE 144 (579)
Q Consensus 68 ~~~~~d~G~Y~C~~~~~~g~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~ 144 (579)
+++.+|+|.|+|.+.+..+.. ...+.|.|...+ ..+|.+........+.+|+.++|.|.+.+. |.+ .|.|++++.
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~--~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~ 162 (227)
T 1mju_H 85 SLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAK--TTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSL 162 (227)
T ss_dssp SCCGGGCEEEEEEEEETTEEEECCCEEEEECSSC--CBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred CCCcccCEEEEEEECCCCceEEcCcEEEEEcCCC--CCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCC
Confidence 999999999999999864322 234567775421 123443322222345679999999999886 666 999999887
Q ss_pred EccCCCCceEEEc-CCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy16852 145 EILPDNGHTMEFN-PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANL 195 (579)
Q Consensus 145 ~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~ 195 (579)
.+........... .....+.|.|..+..+| |.|+|.|.|..+.......+
T Consensus 163 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~ 213 (227)
T 1mju_H 163 SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKI 213 (227)
T ss_dssp CTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred cCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEe
Confidence 5421100011111 00113579999999888 99999999977665444433
No 267
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=154.14 Aligned_cols=181 Identities=23% Similarity=0.336 Sum_probs=132.7
Q ss_pred CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCC--CCEEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHAT--EHYLITTVESVSTLEIINPTKEDIGVYTCKA 81 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (579)
.+||.| ..|.++.+.+|+.++|.|.+.|.|.+.+.|+|+|..+... .++.+........|.|.+++.+|+|.|+|.|
T Consensus 17 ~~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 95 (215)
T 3mtr_A 17 MYAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTA 95 (215)
T ss_dssp CEEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEE
T ss_pred ecCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEE
Confidence 357888 5788899999999999999999999999999999998765 4666666677899999999999999999999
Q ss_pred EcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEe----ecCC--eEEEEECCEEccCCCCceEE
Q psy16852 82 TNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG----RPTP--SICWYRGKEEILPDNGHTME 155 (579)
Q Consensus 82 ~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~----~p~~--~i~W~~~~~~~~~~~~~~~~ 155 (579)
.|..|.....+.+.|...|. +|.... ....+..+.|.|.... .|.. .+.|.+++... .....
T Consensus 96 ~n~~g~~~~~~~l~v~~~P~---~p~~~~-----~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~----w~~~~ 163 (215)
T 3mtr_A 96 VNRIGQESLEFILVQADTPS---SPSIDQ-----VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEV----WHSKW 163 (215)
T ss_dssp ECSSCEEEEEEEEEECCCCC---CCEEEE-----EEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCC----CEEEE
T ss_pred EECCCceEEEEEEEECCCCC---CCcceE-----EEEecceEEEEEecCCccCCCceEEEEEEEEECCCCc----ccccc
Confidence 99999888888888875532 222211 1234677899997422 1222 47788766421 11111
Q ss_pred E--cCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEE
Q psy16852 156 F--NPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVL 197 (579)
Q Consensus 156 ~--~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v 197 (579)
. ........|.|.++...+.|.|+|.|.|..|....+..+.+
T Consensus 164 ~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v 207 (215)
T 3mtr_A 164 YDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEF 207 (215)
T ss_dssp EEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEE
T ss_pred cccccccccccEEECCCCCCCEEEEEEEEEeCCcccCcccceee
Confidence 1 00011147999999999999999999999987655544443
No 268
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.78 E-value=3e-18 Score=150.97 Aligned_cols=176 Identities=14% Similarity=0.155 Sum_probs=120.4
Q ss_pred ceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECC---EE--cc-------CCCCceEEEcCCCCeEEEEECcCCCCC
Q psy16852 107 KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGK---EE--IL-------PDNGHTMEFNPTTGECVLSISEATPQD 174 (579)
Q Consensus 107 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~---~~--~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d 174 (579)
.+...+..+.+.+|+.++|.|.+.+.|.+.+.||+.. .. +. .....++......+..+|.|.+++.+|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 82 (213)
T 3r06_A 3 QMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESED 82 (213)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred eeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCccc
Confidence 3444466788999999999999988888999999832 10 00 011122222234466799999999999
Q ss_pred CeEEEEEEEcCCceeE-EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCC--CeEEEEECCEE
Q psy16852 175 EAVYSVKAVNTFGRAE-CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPT--PEVKWFKNGKE 251 (579)
Q Consensus 175 ~G~Y~C~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~~~~ 251 (579)
+|.|+|.+.+..+... ....+.+.. ...+|.+...+.......|+.+.|.|.+.+.++ +.+.|+++|..
T Consensus 83 ~G~Y~C~~~~~~~~~~~~~~~l~V~~--------~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~ 154 (213)
T 3r06_A 83 IGSYYCQQYYNYPWTFGPGTKLEIKR--------ADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSE 154 (213)
T ss_dssp CSEEEEEECSSSSCEECCCEEEEECC--------CCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred CEEEEEecccCCceEEcCCceEEEec--------cCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcc
Confidence 9999999988754222 223344421 135666655444444557888999999998554 38999999998
Q ss_pred eccCc-e---------EEeCCeEEEEEcccCCCCCeEEEEEEEcCCeee
Q psy16852 252 IVSKD-I---------ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEA 290 (579)
Q Consensus 252 i~~~~-~---------~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~ 290 (579)
+.... . ......+.|.|.....+|.|.|+|.|.|.....
T Consensus 155 l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~ 203 (213)
T 3r06_A 155 KRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTA 203 (213)
T ss_dssp ECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred cCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCc
Confidence 87532 0 011123468888888889999999999987543
No 269
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.78 E-value=3.8e-18 Score=153.93 Aligned_cols=181 Identities=17% Similarity=0.183 Sum_probs=122.1
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE--------------CCEEecCC----CCEEEEEe-CCEEEEEE
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK--------------DGTELHAT----EHYLITTV-ESVSTLEI 66 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~--------------~g~~~~~~----~~~~~~~~-~~~~~L~i 66 (579)
.+.++..|..+.+.+|++++|.| ..+.+.+.+.||| ++...... .++.+... ....+|+|
T Consensus 2 ~~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I 80 (245)
T 4ei6_B 2 GPKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKI 80 (245)
T ss_dssp CCCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEE
T ss_pred CcceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEE
Confidence 46788889999999999999999 5566778999999 33222211 45554432 34679999
Q ss_pred cCCCCCCCEEEEEEEEcC----CeeeEEEEEEEEEecccCCCCCcee-cCCCceEEccCCcEEEEEEEEeecC-C-eEEE
Q psy16852 67 INPTKEDIGVYTCKATNI----GGVATCSANLIVLEKEESGEAPKFT-KPLKPVIAEAQSPATLKATVTGRPT-P-SICW 139 (579)
Q Consensus 67 ~~~~~~d~G~Y~C~~~~~----~g~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~p~-~-~i~W 139 (579)
.+++.+|+|.|+|.+.+. .........+.|........+|.+. ..+....+.+|+.++|.|.+.+.++ + .+.|
T Consensus 81 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W 160 (245)
T 4ei6_B 81 QPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 160 (245)
T ss_dssp CSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred CCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEE
Confidence 999999999999999853 2233344567776432222344333 2334444567999999999988544 4 8999
Q ss_pred EECCEEccCCCCceE---EEcC--CCCe----EEEEECcCCCCC-CeEEEEEEEcCCc
Q psy16852 140 YRGKEEILPDNGHTM---EFNP--TTGE----CVLSISEATPQD-EAVYSVKAVNTFG 187 (579)
Q Consensus 140 ~~~~~~~~~~~~~~~---~~~~--~~~~----~~l~i~~~~~~d-~G~Y~C~~~~~~~ 187 (579)
++++..+........ .... .++. ..|.|.....+| .|.|+|.+.|...
T Consensus 161 ~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l 218 (245)
T 4ei6_B 161 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL 218 (245)
T ss_dssp EETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred EECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCC
Confidence 999988764321100 0000 1121 358888888888 9999999998654
No 270
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.78 E-value=6.5e-18 Score=151.64 Aligned_cols=184 Identities=14% Similarity=0.174 Sum_probs=123.1
Q ss_pred EEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECC-------------E-EccCCCeEEEEECCCC
Q psy16852 297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDG-------------T-PMKEGKEVTIYQDTDG 362 (579)
Q Consensus 297 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~-------------~-~~~~~~~~~~~~~~~~ 362 (579)
.+.+..|..+.|.|.+... |.+.+.|++.+ . ......++... ...+
T Consensus 33 ~~~v~~G~~v~L~C~~~~~-------------------~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~ 92 (237)
T 3sob_L 33 SLSASVGDRVTITCRASQD-------------------VSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGS-GSGT 92 (237)
T ss_dssp EEEEETTCCEEEEEEESSC-------------------CTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-EETT
T ss_pred eEEEeCCCcEEEEEecCCC-------------------CCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEE-cCCC
Confidence 3557788888888875544 34455555521 1 11123344443 2345
Q ss_pred eEEEEEcccCCCCCEEEEEEEEcCceeE-EEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEee-C-CCeE
Q psy16852 363 LCKLAISEVFPENAGLYSCTAVNPVGEA-VAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-P-TPSI 439 (579)
Q Consensus 363 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p-~~~v 439 (579)
..+|.|.+++.+|+|.|+|.+.+..+.. .....+.|.. ...+|.+...........|+.++|.|.+.|. | .+.+
T Consensus 93 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~---~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v 169 (237)
T 3sob_L 93 DFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKR---TVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKV 169 (237)
T ss_dssp EEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEEC---CCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEE
T ss_pred EEEEEECCCChhhCeEEEEeeccCCceEEcCcEEEEEec---CCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEE
Confidence 6789999999999999999998876532 2344666654 2246777654444445568899999999984 4 4799
Q ss_pred EEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEe
Q psy16852 440 CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAEN 519 (579)
Q Consensus 440 ~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 519 (579)
.|+++|..+..+. +........+.|.|.+. +.|.|..+..+|+|.|+|.|.|
T Consensus 170 ~W~k~g~~~~~~~--------------~~~~~~~~~~~g~~~~~--------------s~L~i~~~~~~d~g~Y~C~a~n 221 (237)
T 3sob_L 170 QWKVDNALQSGNS--------------QESVTEQDSKDSTYSLS--------------STLTLSKADYEKHKVYACEVTH 221 (237)
T ss_dssp EEEETTEECCSSE--------------EEEECCCCTTTCCEEEE--------------EEEEEEHHHHTTCCEEEEEEEC
T ss_pred EEEECCCCCCCce--------------eecccccccCCCcEEEE--------------EEEEEcHHHccCCCcEEEEEee
Confidence 9999999885431 12223344455666544 3499999999999999999999
Q ss_pred CCeeEEEEEEEE
Q psy16852 520 VAGSVTCTATLS 531 (579)
Q Consensus 520 ~~g~~~~~~~l~ 531 (579)
.......+..+.
T Consensus 222 ~~~~~~~~~~~~ 233 (237)
T 3sob_L 222 QGLSSPVTKSFN 233 (237)
T ss_dssp TTCSSCEEEEEE
T ss_pred CCCCCceeeeee
Confidence 987655544443
No 271
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=99.78 E-value=2.6e-18 Score=157.25 Aligned_cols=181 Identities=16% Similarity=0.179 Sum_probs=121.0
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE--CCEE------------ecCC----CCEEEEEe-CCEEEEEE
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK--DGTE------------LHAT----EHYLITTV-ESVSTLEI 66 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~--~g~~------------~~~~----~~~~~~~~-~~~~~L~i 66 (579)
.+.++..|..+.+.+|++++|.|.+. .+.+.+.||| .+.. .... .++.+... ....+|+|
T Consensus 26 ~~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I 104 (268)
T 3pl6_D 26 GAGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKI 104 (268)
T ss_dssp -SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEE
T ss_pred CceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEE
Confidence 45677788889999999999999986 4667999999 2221 1111 44544432 33688999
Q ss_pred cCCCCCCCEEEEEEEEcC--CeeeEEEEEEEEEecccCCCCCcee-cCCCceEEccCCcEEEEEEEEeecCC--eEEEEE
Q psy16852 67 INPTKEDIGVYTCKATNI--GGVATCSANLIVLEKEESGEAPKFT-KPLKPVIAEAQSPATLKATVTGRPTP--SICWYR 141 (579)
Q Consensus 67 ~~~~~~d~G~Y~C~~~~~--~g~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~ 141 (579)
.+++.+|+|.|+|.+.+. .........+.|........+|.+. ..+....+.+|+.++|.|.+.+.+++ .+.|++
T Consensus 105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~ 184 (268)
T 3pl6_D 105 QRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV 184 (268)
T ss_dssp CSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred CCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEE
Confidence 999999999999999973 3333445567776533222344433 23444445679999999999886664 999999
Q ss_pred CCEEccCCCCce---EE--EcCCCC----eEEEEECcCCCCC-CeEEEEEEEcCCc
Q psy16852 142 GKEEILPDNGHT---ME--FNPTTG----ECVLSISEATPQD-EAVYSVKAVNTFG 187 (579)
Q Consensus 142 ~~~~~~~~~~~~---~~--~~~~~~----~~~l~i~~~~~~d-~G~Y~C~~~~~~~ 187 (579)
++..+....... .. ....++ ...|.|.....+| .|.|+|.+.|...
T Consensus 185 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l 240 (268)
T 3pl6_D 185 NGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGL 240 (268)
T ss_dssp SSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred CCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCC
Confidence 998875431100 00 000111 1457888887777 9999999998754
No 272
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.77 E-value=9.7e-18 Score=146.16 Aligned_cols=177 Identities=15% Similarity=0.215 Sum_probs=115.6
Q ss_pred EEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccC------------CCeEEEEECCCCeEE
Q psy16852 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKE------------GKEVTIYQDTDGLCK 365 (579)
Q Consensus 298 v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~------------~~~~~~~~~~~~~~~ 365 (579)
|.+..|..+.|.|.+.... .+.|.+.+.|++++..+.. ..+.... ..+...
T Consensus 4 v~v~~G~~v~L~C~~~~~~---------------~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~--~~~~~~ 66 (201)
T 1dr9_A 4 VTKEVKEVATLSCGHNVSV---------------EELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD--ITNNLS 66 (201)
T ss_dssp EEEETTSCEEECCSCCCCT---------------THHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE--STTTTE
T ss_pred EEEEeCCCEEEecccCCCc---------------ccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEc--cCCCcE
Confidence 5677888999999764211 2345667888888876521 1112211 122348
Q ss_pred EEEcccCCCCCEEEEEEEEcCceeE-----EEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEE-eeCCCeE
Q psy16852 366 LAISEVFPENAGLYSCTAVNPVGEA-----VAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT-GRPTPSI 439 (579)
Q Consensus 366 l~i~~~~~~d~G~Y~C~a~n~~g~~-----~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-g~p~~~v 439 (579)
|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|.... ..|.+... ....|+.++|.|.+. |.|.|.|
T Consensus 67 L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~---~~p~~~~~----~~~~g~~~~l~C~~~~g~P~p~i 139 (201)
T 1dr9_A 67 IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADF---PTPSISDF----EIPTSNIRRIICSTSGGFPEPHL 139 (201)
T ss_dssp EEECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEECCC---CCCEEEEE----ECSSTTEEEEEEEEEEESSCEEE
T ss_pred EEEecccchhCeEEEEEEEcCCCCccccccccEEEEEEcCCC---CCCceEec----cCCCCCeEEEEEecCCccCCCEE
Confidence 9999999999999999999976533 346666666532 23444321 124588999999995 9999999
Q ss_pred EEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEe
Q psy16852 440 CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAEN 519 (579)
Q Consensus 440 ~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 519 (579)
.|+++|..+..... .+.. ..+.|.|. ...+..+..+|.|.|+|.|.|
T Consensus 140 ~W~k~g~~l~~~~~-~~~~---------------~~~~~~~~-----------------~~~~~~v~~~d~g~Y~C~a~n 186 (201)
T 1dr9_A 140 SWLENGEELNAINT-TVSQ---------------DPETELYA-----------------VSSKLDFNMTTNHSFMCLIKY 186 (201)
T ss_dssp EEEESSCEECCSEE-EEEE---------------CTTTCCEE-----------------EEEEEEEETTSCEEEEEEEEE
T ss_pred EEEECCEECccccc-eEEe---------------cCCCcEEE-----------------EEEEEEEEecCCCEEEEEEec
Confidence 99999988754321 1111 01112221 123445566899999999999
Q ss_pred CCeeEEEEEEEE
Q psy16852 520 VAGSVTCTATLS 531 (579)
Q Consensus 520 ~~g~~~~~~~l~ 531 (579)
..|.....+.+.
T Consensus 187 ~~~~~s~~~~~~ 198 (201)
T 1dr9_A 187 GHLRVNQTFNWN 198 (201)
T ss_dssp TTCCEEEEEEEC
T ss_pred CcceeeeEEecc
Confidence 999988776653
No 273
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.77 E-value=1.4e-18 Score=159.29 Aligned_cols=179 Identities=12% Similarity=0.155 Sum_probs=120.4
Q ss_pred ceecCCCceEEccCCcEEEEEEEE---eecCCeEEEEECCEEccCC------------------CCceEEEcCCCCeEEE
Q psy16852 107 KFTKPLKPVIAEAQSPATLKATVT---GRPTPSICWYRGKEEILPD------------------NGHTMEFNPTTGECVL 165 (579)
Q Consensus 107 ~~~~~~~~~~~~~g~~~~l~C~~~---~~p~~~i~W~~~~~~~~~~------------------~~~~~~~~~~~~~~~l 165 (579)
.+...+..+.+.+|+.++|.|.+. +.+.+.|.|++++...... .+..+..+...+..+|
T Consensus 7 ~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 86 (268)
T 3mj6_A 7 GLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSL 86 (268)
T ss_dssp -----CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCE
T ss_pred ccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEE
Confidence 344455667889999999999987 5667899999965432111 1111111223445789
Q ss_pred EECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEE---EccCCCe
Q psy16852 166 SISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEY---TGTPTPE 242 (579)
Q Consensus 166 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~---~~~p~~~ 242 (579)
.|.+++.+|+|.|+|.+.+..+.......+.+.+. ...+....+.+|+.+.|.|.+ .+.|.+.
T Consensus 87 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--------------~~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~ 152 (268)
T 3mj6_A 87 LLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL--------------PEEPRDLRVRVGDTTQMRCSIQSTEEKRVTK 152 (268)
T ss_dssp EECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE--------------CCCCSEEEEETTCCEEECCBCEESSSSCCCE
T ss_pred EECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe--------------ccCCCccccccCCcEEEEEEecCCCCCCccc
Confidence 99999999999999999987655544444444321 012234568899999999998 4568889
Q ss_pred EEEEEC-CEEecc------------------Cc----eEE----eCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEE
Q psy16852 243 VKWFKN-GKEIVS------------------KD----IET----KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGS 295 (579)
Q Consensus 243 v~W~~~-~~~i~~------------------~~----~~~----~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~ 295 (579)
+.|+++ +..... .. ... ......|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 153 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 232 (268)
T 3mj6_A 153 VNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIV 232 (268)
T ss_dssp EEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred eEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEE
Confidence 999994 221100 00 000 134568999999999999999999999888777766
Q ss_pred EEEE
Q psy16852 296 VTIT 299 (579)
Q Consensus 296 ~~v~ 299 (579)
|.|.
T Consensus 233 l~V~ 236 (268)
T 3mj6_A 233 LHVV 236 (268)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
No 274
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.77 E-value=3.3e-18 Score=128.95 Aligned_cols=95 Identities=21% Similarity=0.319 Sum_probs=80.6
Q ss_pred CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS 485 (579)
Q Consensus 406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 485 (579)
.||.|...+.+..+.+|+.+.|.|.+.|.|.|++.|+++|..+....+.++
T Consensus 4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~----------------------------- 54 (100)
T 3knb_A 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRF----------------------------- 54 (100)
T ss_dssp EEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTE-----------------------------
T ss_pred CCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeecccee-----------------------------
Confidence 478888888889999999999999999999999999999999866543222
Q ss_pred cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.+...+..++|.|.+++.+|+|.|+|.|.|.+|....++.|.|+
T Consensus 55 ----~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 98 (100)
T 3knb_A 55 ----HIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIR 98 (100)
T ss_dssp ----EEEECSSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ----eeecccceEEEEEcCCCccCCEEEEEEEEECCCEEEEEEEEEEE
Confidence 12234456679999999999999999999999999999999986
No 275
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}
Probab=99.77 E-value=1.2e-16 Score=136.38 Aligned_cols=244 Identities=20% Similarity=0.250 Sum_probs=160.7
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEee-C---CCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGH-P---LPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~-~---~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (579)
++.+...|....+..|+.++|+|.+.+. | ...|+|||||..+.... ..|.|..++..|+|.|+|.+
T Consensus 2 ~~tVs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGaT----------~tLti~s~t~sdSG~YqCvV 71 (304)
T 3shs_A 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT----------ATLTVADATSENAGSYKVTV 71 (304)
T ss_dssp CEEEEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCCS----------SEEEESSCCGGGCEEEEEEE
T ss_pred ccEEEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCCc----------ceEEeeeccccCCeEEEEEE
Confidence 3455667888999999999999998654 4 23799999998876432 47999999999999999999
Q ss_pred EcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE--Ee-ec-----CCeEEEEECCEEccCCCCce
Q psy16852 82 TNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV--TG-RP-----TPSICWYRGKEEILPDNGHT 153 (579)
Q Consensus 82 ~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~-~p-----~~~i~W~~~~~~~~~~~~~~ 153 (579)
.+..|....+..+.|...... ......+....+..|..+.|.+.+ .| .| ..+++||+++..+...
T Consensus 72 TDa~Gcs~tSs~VtVT~~a~l---~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~IsgA---- 144 (304)
T 3shs_A 72 QDTDTMTSVESEVFLMEEAEL---IVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTT---- 144 (304)
T ss_dssp EETTTCCEEECCCEEECBCCE---EEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEESS----
T ss_pred EECCCCeeeeeeEEEeccCce---eEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccCc----
Confidence 998886655555555543211 012223555666778899999987 33 34 4699999999876432
Q ss_pred EEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEE
Q psy16852 154 MEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEA 233 (579)
Q Consensus 154 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C 233 (579)
..|.+......++|.|+|.+.+..+....+....+... ..+.-..-.....+..|+.+.|.-
T Consensus 145 ---------q~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~---------~~~v~~~~~~~~~~~~~~~~~~~~ 206 (304)
T 3shs_A 145 ---------QDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLA---------TMNVDQDVVESKTVALGNEISLNY 206 (304)
T ss_dssp ---------SEEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEEC---------EEEEEECCCSEEEEETTSCEEECC
T ss_pred ---------cccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEE---------ccccchhheEeehhhcCcEEEEEE
Confidence 24778888889999999999998764333333333211 111111112344577899888877
Q ss_pred EEE--------ccCCC--eEEEEE--CCEE----eccCc------eEEeCCeEEEEEcccCCCCCeEEEEEEEc
Q psy16852 234 EYT--------GTPTP--EVKWFK--NGKE----IVSKD------IETKDNVTKLVIKQTTKKTTGKYEIRVVN 285 (579)
Q Consensus 234 ~~~--------~~p~~--~v~W~~--~~~~----i~~~~------~~~~~~~~~l~i~~~~~~d~G~y~C~a~n 285 (579)
.+. |-|.. .+.||. .|+. +...- +.. .....|.-.....+|...|.|.++-
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (304)
T 3shs_A 207 VVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSI-TPDGHLFKESATYDDTAKFWCVAKL 279 (304)
T ss_dssp EEEEECCSCCTTCCEEEEEEEEEEECTTCCSCEEEESSSEECGGGEEE-CTTSCEEESSCCGGGCEEEEEEEEE
T ss_pred EEeeccccCCCCCCceEEEEEEEEeecCccCchhhhhhhhhhhcccee-CCCcceeecccccccchheeeHHHH
Confidence 654 22332 467875 3321 11111 111 1223566677888999999999853
No 276
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=99.77 E-value=2.5e-18 Score=154.54 Aligned_cols=179 Identities=13% Similarity=0.191 Sum_probs=121.4
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE--------------CCEEec---CCCCEEEEEe-CCEEEEEEc
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK--------------DGTELH---ATEHYLITTV-ESVSTLEII 67 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~--------------~g~~~~---~~~~~~~~~~-~~~~~L~i~ 67 (579)
.+.+...|.++.+.+|++++|.|.+.+ +.+.+.||| ++.... ...++..... ....+|+|.
T Consensus 2 ~~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~ 80 (240)
T 3q5y_A 2 DSGVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMS 80 (240)
T ss_dssp CCCCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEEC
T ss_pred CcccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEEC
Confidence 456778889999999999999999875 667999999 222211 1245555442 346789999
Q ss_pred CCCCCCCEEEEEEEEcC--C-eeeEEEEEEEEEecccCCCCCceec-CCCceEEccCCcEEEEEEEEe-ecCC-eEEEEE
Q psy16852 68 NPTKEDIGVYTCKATNI--G-GVATCSANLIVLEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTG-RPTP-SICWYR 141 (579)
Q Consensus 68 ~~~~~d~G~Y~C~~~~~--~-g~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~ 141 (579)
+++.+|+|.|+|.+.+. . ........+.|........+|.+.. .+....+.+|+.++|.|.+.+ .|.+ .+.|++
T Consensus 81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~ 160 (240)
T 3q5y_A 81 ALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWV 160 (240)
T ss_dssp SCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred cCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEE
Confidence 99999999999999832 1 2233345677764222223444332 334444567999999999988 4545 899999
Q ss_pred CCEEccCCCCce---EEEcCCCCe----EEEEECcCCCCC-CeEEEEEEEcCCc
Q psy16852 142 GKEEILPDNGHT---MEFNPTTGE----CVLSISEATPQD-EAVYSVKAVNTFG 187 (579)
Q Consensus 142 ~~~~~~~~~~~~---~~~~~~~~~----~~l~i~~~~~~d-~G~Y~C~~~~~~~ 187 (579)
++..+....... ... .++. +.|.|.....+| .|.|+|.+.|...
T Consensus 161 ~g~~l~~~~~~~~~~~~~--~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~ 212 (240)
T 3q5y_A 161 NGKEVHSGVSTDPQAYKE--SNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGL 212 (240)
T ss_dssp TTEEECTTEEECSSCEEE--ETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred CCEECcCcEecCCceeeC--CCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCC
Confidence 999876432211 111 1122 358899988888 7799999998654
No 277
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.77 E-value=2.7e-18 Score=157.21 Aligned_cols=224 Identities=14% Similarity=0.184 Sum_probs=122.7
Q ss_pred CCCCCeEEEEEEEcCCeeeEEEEEE-------EEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEEC
Q psy16852 272 TKKTTGKYEIRVVNEAGEARTSGSV-------TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHD 344 (579)
Q Consensus 272 ~~~d~G~y~C~a~n~~g~~~~~~~~-------~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~ 344 (579)
...|.+.|.|.+.+..|....+..+ .+.+..|+.+.|.|.+.. +...+.|+... .+.....+.+..+
T Consensus 4 ~~~~~~~y~~~~~~~~g~~~~~~~~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~-----~~~~~~~~~~~~~ 77 (270)
T 3qib_D 4 ERADLIAYLKQATKGGGGSGGGGGMKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQN-----KNNEFKFLINFQN 77 (270)
T ss_dssp ------------------------CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEEC-----TTCCEEEEEEEET
T ss_pred hhhhHHHHHHHHhccCCccccccceeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEEC-----CCCCcEEEEEECC
Confidence 4578899999999876654433222 345778888999997543 33444443210 1111112222223
Q ss_pred CEEccCCC----eEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCc----eeEEEEEEEEEEecccCCCCCeeec-CCC
Q psy16852 345 GTPMKEGK----EVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPV----GEAVAAATLAVEEKEESGEAPKFTK-PLK 415 (579)
Q Consensus 345 ~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~----g~~~~~~~l~v~~~~~~~~~p~~~~-~~~ 415 (579)
+....... ++.......+.++|.|.+++.+|+|.|.|.+.+.. ......+.|.|........+|.+.. .+.
T Consensus 78 ~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~ 157 (270)
T 3qib_D 78 QEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPS 157 (270)
T ss_dssp TEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECC
T ss_pred CCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCC
Confidence 32222111 45544444567799999999999999999999642 2333445677765433334565443 334
Q ss_pred ceeeecCCCeEEEEEEEe-eCCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852 416 PVIAEAQSPATLKATVTG-RPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT 493 (579)
Q Consensus 416 ~~~~~~g~~~~l~C~~~g-~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 493 (579)
...+..|+.++|.|.+.| .|.+ .+.|+++|..+..+..... ..+..+...+.|.|.+.
T Consensus 158 ~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~---------- 217 (270)
T 3qib_D 158 EAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDP----------QPLKEQPALNDSRYALS---------- 217 (270)
T ss_dssp HHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECS----------SCEESCTTSSSCCEEEE----------
T ss_pred ccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCccccc----------ccccccccCCCCCEEEE----------
Confidence 445667999999999998 6666 8999999998854321100 01122344456666544
Q ss_pred eCCeeEEEEeeccccc-ceeEEEEEEeCCeeEE
Q psy16852 494 DGNRSVLLISKITRDQ-IGDVTCRAENVAGSVT 525 (579)
Q Consensus 494 ~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~ 525 (579)
+.|.|.....+| .|.|+|.|.|......
T Consensus 218 ----s~L~i~~~~~~d~~g~YtC~v~~~~l~~~ 246 (270)
T 3qib_D 218 ----SRLRVSATFWQNPRNHFRCQVQFYGLSEN 246 (270)
T ss_dssp ----EEEEEEHHHHHSTTCEEEEEEEECCBCTT
T ss_pred ----EEEEEcHHHhccCCCeEEEEEEecCCCCc
Confidence 348999998888 9999999999866543
No 278
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.77 E-value=1.6e-18 Score=156.67 Aligned_cols=178 Identities=15% Similarity=0.174 Sum_probs=114.1
Q ss_pred CCCceEEccCCcEEEEEEEEeecCCe-----EEEEECCEEccC---------------CCCceEE-EcCCCCeEEEEECc
Q psy16852 111 PLKPVIAEAQSPATLKATVTGRPTPS-----ICWYRGKEEILP---------------DNGHTME-FNPTTGECVLSISE 169 (579)
Q Consensus 111 ~~~~~~~~~g~~~~l~C~~~~~p~~~-----i~W~~~~~~~~~---------------~~~~~~~-~~~~~~~~~l~i~~ 169 (579)
.+..+.+.+|+.++|.|.+.+.|.+. |.|++++..... ..+..+. .....+..+|.|.+
T Consensus 9 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~ 88 (248)
T 3pv7_A 9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPG 88 (248)
T ss_dssp TTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESS
T ss_pred CCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCC
Confidence 34456788999999999998887765 999996432110 0000000 00122345699999
Q ss_pred CCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCC-eEEEEE
Q psy16852 170 ATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTP-EVKWFK 247 (579)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~ 247 (579)
++.+|+|.|+|.+.+..+.......+.|. .+|.+...+.. ....|..+.|.|.+.+ .|.+ .+.|++
T Consensus 89 v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~-----------~~P~v~~~~~~-~~~~~~~~~L~C~~~g~~P~pi~v~W~k 156 (248)
T 3pv7_A 89 IQLEEAGEYRCEVVVTPLKAQGTVQLEVV-----------ASPASRLLLDQ-VGMKENEDKYMCESSGFYPEAINITWEK 156 (248)
T ss_dssp CCGGGCEEEEEEEEETTEEEEEEEEEEEE-----------BCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEE
T ss_pred CCHHHCeEEEEEEEeCCccceeEEEEEEe-----------cCCceEEecCC-ccccCCCcEEEEEEccEECCCeEEEEEE
Confidence 99999999999999988766666666654 35555444332 3446778889999998 7888 999999
Q ss_pred CCEEeccC---------------ceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEe
Q psy16852 248 NGKEIVSK---------------DIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300 (579)
Q Consensus 248 ~~~~i~~~---------------~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~ 300 (579)
+|+.+... ........+.|.+.....+|.|.|+|.|.|..+.......+.|.+
T Consensus 157 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 157 QTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp ECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred CCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence 98533211 001111235788888999999999999999988755555555444
No 279
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.77 E-value=4.7e-18 Score=157.03 Aligned_cols=177 Identities=18% Similarity=0.271 Sum_probs=118.8
Q ss_pred ccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--EE---ec--------------CCCCEEEEEe--CCEEEEEE
Q psy16852 10 IEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--TE---LH--------------ATEHYLITTV--ESVSTLEI 66 (579)
Q Consensus 10 ~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~~---~~--------------~~~~~~~~~~--~~~~~L~i 66 (579)
+..|..+.+.+|++++|.|.+.+.+ .+.+.|||++ .. +. ...++..... ....+|+|
T Consensus 26 v~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 105 (291)
T 2gki_A 26 LQQSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMEL 105 (291)
T ss_dssp EEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEE
T ss_pred EEcCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEE
Confidence 3457789999999999999998765 4689999953 11 10 1234444332 34688999
Q ss_pred cCCCCCCCEEEEEEEEcCC-e--e--eEEEEEEEEEec----------ccCCCCCceecCCCceEEccCCcEEEEEEEEe
Q psy16852 67 INPTKEDIGVYTCKATNIG-G--V--ATCSANLIVLEK----------EESGEAPKFTKPLKPVIAEAQSPATLKATVTG 131 (579)
Q Consensus 67 ~~~~~~d~G~Y~C~~~~~~-g--~--~~~~~~~~v~~~----------~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 131 (579)
.+++.+|+|.|+|.+.+.. | . ....+.|.|... +....++.+...+..+.+.+|++++|.|.+.+
T Consensus 106 ~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~ 185 (291)
T 2gki_A 106 SSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQ 185 (291)
T ss_dssp CSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESS
T ss_pred CcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCC
Confidence 9999999999999999864 1 1 112346666541 00111334455566778899999999999987
Q ss_pred ecCC------eEEEEECC--EE---ccC-------CCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852 132 RPTP------SICWYRGK--EE---ILP-------DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF 186 (579)
Q Consensus 132 ~p~~------~i~W~~~~--~~---~~~-------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 186 (579)
.+.+ .+.||++. .. +.. ....++.........+|.|.+++.+|+|.|+|.+.+..
T Consensus 186 ~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~ 258 (291)
T 2gki_A 186 SLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYH 258 (291)
T ss_dssp CCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred ccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence 7654 89999963 21 110 00112222223445789999999999999999998854
No 280
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.77 E-value=2.6e-18 Score=151.57 Aligned_cols=174 Identities=16% Similarity=0.248 Sum_probs=114.7
Q ss_pred CCCceEEccCCcEEEEEEEEee-------cCCeEEEEECCEEc-----c----------CCCCceEEEc--CCCCeEEEE
Q psy16852 111 PLKPVIAEAQSPATLKATVTGR-------PTPSICWYRGKEEI-----L----------PDNGHTMEFN--PTTGECVLS 166 (579)
Q Consensus 111 ~~~~~~~~~g~~~~l~C~~~~~-------p~~~i~W~~~~~~~-----~----------~~~~~~~~~~--~~~~~~~l~ 166 (579)
.+..+.+.+|+.++|.|.+.+. +.+.+.||+++... . .....++... ...+..+|.
T Consensus 6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~ 85 (214)
T 2zg1_A 6 VQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLS 85 (214)
T ss_dssp CCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEE
T ss_pred CCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEE
Confidence 3456778899999999998753 46799999986531 1 1111223322 223456899
Q ss_pred ECcCCCCCCeEEEEEEEcCCceeE----EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc----
Q psy16852 167 ISEATPQDEAVYSVKAVNTFGRAE----CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT---- 238 (579)
Q Consensus 167 i~~~~~~d~G~Y~C~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~---- 238 (579)
|.+++.+|+|.|+|.+.+..+... ....+.|... ..+|.+..+. .+.+|+.++|.|.+.+.
T Consensus 86 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~--------~~~p~i~~~~---~~~~G~~v~L~C~~~~~~~~~ 154 (214)
T 2zg1_A 86 IGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTAL--------IEKPDIHFLE---PLESGRPTRLSCSLPGSCEAG 154 (214)
T ss_dssp ECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECC--------CCCCEEC--C---CCCTTCCEEEEEECTTCCSCS
T ss_pred EccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecC--------CCCCceecCc---cccCCCeEEEEEEeccCCCCC
Confidence 999999999999999998753222 1334444321 1234443322 26789999999998763
Q ss_pred CCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEE
Q psy16852 239 PTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298 (579)
Q Consensus 239 p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v 298 (579)
|.+.+.|++++....... ....+.|.|..+..+|.|.|+|.|.|..+....+..+.|
T Consensus 155 p~p~v~W~~~~~~~~~~~---~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l 211 (214)
T 2zg1_A 155 PPLTFSWTGNALSPLDPE---TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQL 211 (214)
T ss_dssp SCCEEEEESSTTSSSCSS---CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEEC
T ss_pred CCceEEEeCCCCccCCCC---ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEE
Confidence 788999999986543221 134567999999999999999999997655444444443
No 281
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.77 E-value=2.3e-18 Score=153.17 Aligned_cols=178 Identities=16% Similarity=0.234 Sum_probs=116.5
Q ss_pred cccCceeeeCCCCEEEEEEEEeeCC----CeeEEEEC--CEE---ec-------------CCCCEEEEEe--CCEEEEEE
Q psy16852 11 EKIQPVVSHQEQPALFTCKVEGHPL----PTMTWQKD--GTE---LH-------------ATEHYLITTV--ESVSTLEI 66 (579)
Q Consensus 11 ~~p~~~~v~~G~~~~l~C~~~~~~~----~~v~W~~~--g~~---~~-------------~~~~~~~~~~--~~~~~L~i 66 (579)
..|.++.+.+|++++|.|.+.+.+. +.+.|||+ |.. +. ...++.+... .+..+|+|
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 84 (228)
T 3bae_H 5 KESGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKI 84 (228)
T ss_dssp EEECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEE
T ss_pred eCCCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEE
Confidence 3478899999999999999987664 78999984 221 10 1234544433 24689999
Q ss_pred cCCCCCCCEEEEEEEEcCCe------e---eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cCC-
Q psy16852 67 INPTKEDIGVYTCKATNIGG------V---ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP- 135 (579)
Q Consensus 67 ~~~~~~d~G~Y~C~~~~~~g------~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~- 135 (579)
.+++.+|+|.|+|.+.+..| . ....+.|.|...+ ..+|.+........+.+|+.++|.|.+.+. |.+
T Consensus 85 ~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~--~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~ 162 (228)
T 3bae_H 85 TSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAK--TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPV 162 (228)
T ss_dssp CSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCC--CBCCEEEEECC-----CCSEEEEEEEEEEEBSSCC
T ss_pred cCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCC--CCCCEEEEecccccccCCCCEEEEEEEccEeCCCE
Confidence 99999999999999988653 1 1123667776321 223444332222335689999999999886 766
Q ss_pred eEEEEECCEEccCCCCceEEEcCC--CCeEEEEECcCCCCCCeEEEEEEEcCCceeEEE
Q psy16852 136 SICWYRGKEEILPDNGHTMEFNPT--TGECVLSISEATPQDEAVYSVKAVNTFGRAECR 192 (579)
Q Consensus 136 ~i~W~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 192 (579)
.|.|++++..+......... ... ...+.|.|..+..+| |.|+|.|.|..+.....
T Consensus 163 ~v~W~~~~~~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~ 219 (228)
T 3bae_H 163 TLTWNSGSLSSGVHTFPAVL-QSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVD 219 (228)
T ss_dssp EEEEGGGTCCTTEEEEEEEE-ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEE
T ss_pred EEEEeeCCcccCceEcCcee-CCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEE
Confidence 99999987643211111111 110 013568999988866 99999999988765443
No 282
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.77 E-value=2.3e-17 Score=146.84 Aligned_cols=184 Identities=14% Similarity=0.162 Sum_probs=116.9
Q ss_pred cccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--E---Eec-------------CCCCEEEEEe--CCEEEEEEcC
Q psy16852 11 EKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--T---ELH-------------ATEHYLITTV--ESVSTLEIIN 68 (579)
Q Consensus 11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~---~~~-------------~~~~~~~~~~--~~~~~L~i~~ 68 (579)
.+|.++.+.+|++++|.|.+.+.+ ...+.|||.. . .+. ...++.+... .+..+|+|.+
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 84 (232)
T 1dn0_B 5 QQWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSS 84 (232)
T ss_dssp EEECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred ECCCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECC
Confidence 457788999999999999998754 4689999842 2 110 1345655543 3467999999
Q ss_pred CCCCCCEEEEEEEEcCC--e----eeEEEEEEEEEecccCCCCCceecCCCceEEccC-CcEEEEEEEEee-cCC-eEEE
Q psy16852 69 PTKEDIGVYTCKATNIG--G----VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ-SPATLKATVTGR-PTP-SICW 139 (579)
Q Consensus 69 ~~~~d~G~Y~C~~~~~~--g----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g-~~~~l~C~~~~~-p~~-~i~W 139 (579)
++.+|+|.|+|.+.+.. + .....+.|.|...+ ..+|.+........+..| +.++|.|.+.+. |.+ .+.|
T Consensus 85 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~--~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W 162 (232)
T 1dn0_B 85 VTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGS--ASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSW 162 (232)
T ss_dssp CCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSC--CBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEE
T ss_pred CCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCC--CCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEE
Confidence 99999999999998321 1 12234567776421 123443321111234478 999999999876 765 9999
Q ss_pred EE-CCEEccCCCCc-eEEEc-CCCCeEEEEECcCCC--CCCeEEEEEEEcCCceeEEEEEEE
Q psy16852 140 YR-GKEEILPDNGH-TMEFN-PTTGECVLSISEATP--QDEAVYSVKAVNTFGRAECRANLV 196 (579)
Q Consensus 140 ~~-~~~~~~~~~~~-~~~~~-~~~~~~~l~i~~~~~--~d~G~Y~C~~~~~~~~~~~~~~~~ 196 (579)
++ ++..+...... ..... .....+.|.|..... +|.|.|+|.+.|..+.......+.
T Consensus 163 ~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~ 224 (232)
T 1dn0_B 163 KYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLP 224 (232)
T ss_dssp EETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECC
T ss_pred EcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecC
Confidence 99 88776430000 00000 000124689988887 889999999999988765554443
No 283
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.77 E-value=8.9e-18 Score=151.41 Aligned_cols=181 Identities=17% Similarity=0.180 Sum_probs=120.2
Q ss_pred ccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEEe--------------cCCCCEEEEE-eCCEEEEEEcCCC
Q psy16852 8 RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTEL--------------HATEHYLITT-VESVSTLEIINPT 70 (579)
Q Consensus 8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~~--------------~~~~~~~~~~-~~~~~~L~i~~~~ 70 (579)
.+...|..+.+.+|++++|.|.+.+.+.+.+.|||. +... ....++.+.. .....+|+|.+++
T Consensus 3 ~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~ 82 (245)
T 3nfj_J 3 TIHQWPATLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASRPQDRQFILSSKKLL 82 (245)
T ss_dssp EEEEECSEEEEETTCCEEEEEEEESCSSCEEEEEEESTTSCEEEEEEESSTTCCBCSSCCSSEEEEEETTEEEEEESSCC
T ss_pred eeeCCCceEEecCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEECCCcccCCccCCcEEEEecCCCEEEEEECCCC
Confidence 456678899999999999999999888889999992 2110 0123343333 3457899999999
Q ss_pred CCCCEEEEEEEEcCCe------eeEEEEEEEEEecccCCCCCceec-CCCceEEccCCcEEEEEEEEee-cCC-eEEEEE
Q psy16852 71 KEDIGVYTCKATNIGG------VATCSANLIVLEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGR-PTP-SICWYR 141 (579)
Q Consensus 71 ~~d~G~Y~C~~~~~~g------~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~ 141 (579)
.+|+|.|+|.+.+..| .......+.|........+|.+.. .+....+.+|+.++|.|.+.+. |++ .+.|++
T Consensus 83 ~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k 162 (245)
T 3nfj_J 83 LSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWV 162 (245)
T ss_dssp GGGCEEEEEEEECCTTTSSCCCEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred hhhCEEEEEEEeeccCCCceeEEECCCeEEEEEcccCCCCCCceEeecCCcccccCCCceEEEEEEccCcCCCEEEEEEE
Confidence 9999999999998221 223345677764222223444332 2333334569999999999885 434 789999
Q ss_pred CCEEccCCCCceE--EEc---CCCC----eEEEEECcCCCCC-CeEEEEEEEcCCce
Q psy16852 142 GKEEILPDNGHTM--EFN---PTTG----ECVLSISEATPQD-EAVYSVKAVNTFGR 188 (579)
Q Consensus 142 ~~~~~~~~~~~~~--~~~---~~~~----~~~l~i~~~~~~d-~G~Y~C~~~~~~~~ 188 (579)
++..+........ ... ..++ ...|.|.....+| .|.|+|.+.|....
T Consensus 163 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~~YtC~v~~~~~~ 219 (245)
T 3nfj_J 163 NGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 219 (245)
T ss_dssp TTEEECTTEEECSSCEESSSSSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred CCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEECCCC
Confidence 9998764321100 000 0112 1468888888778 67999999987543
No 284
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.77 E-value=1e-18 Score=154.03 Aligned_cols=182 Identities=15% Similarity=0.134 Sum_probs=114.8
Q ss_pred CCCCccccccCcee--eeCCCCEEEEEEEEeeC---C-CeeEEEECCEEecCCCCEEEEEe-C----CEEEEEEcCCCCC
Q psy16852 4 VLAPRFIEKIQPVV--SHQEQPALFTCKVEGHP---L-PTMTWQKDGTELHATEHYLITTV-E----SVSTLEIINPTKE 72 (579)
Q Consensus 4 ~~~p~~~~~p~~~~--v~~G~~~~l~C~~~~~~---~-~~v~W~~~g~~~~~~~~~~~~~~-~----~~~~L~i~~~~~~ 72 (579)
..+|.+...|.... +.+|++++|.|.+.+.+ . +.|.|||++..+........... . ....|.|.+++.+
T Consensus 7 ~~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 86 (218)
T 2rgs_A 7 EGGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWM 86 (218)
T ss_dssp --CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHH
T ss_pred CCCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcC
Confidence 34677766666655 89999999999998873 3 68999999987753321111100 1 1357999999999
Q ss_pred CCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEe-ecCC-eEEEEECCEEccCCC
Q psy16852 73 DIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTP-SICWYRGKEEILPDN 150 (579)
Q Consensus 73 d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~~~~ 150 (579)
|+|.|+|.+.|..+.......+.. ......+|.+...+......+|+.++|.|.+.| +|.+ .|+|++++..+....
T Consensus 87 D~g~Y~C~~~~~~~~~~~~~~v~~--~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~ 164 (218)
T 2rgs_A 87 SGKEFKCKVNNKDLPSPIERTISK--IKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYK 164 (218)
T ss_dssp TTCCEEEEEEETTCSSCEEEEECC--CCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEE
T ss_pred CCCeEEEEEECCcCCCcceEEEee--cCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCce
Confidence 999999999998664311122211 011123444433222222235999999999998 4654 999999998874321
Q ss_pred CceEEEcCCCCe----EEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852 151 GHTMEFNPTTGE----CVLSISEATPQDEAVYSVKAVNTFGR 188 (579)
Q Consensus 151 ~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~ 188 (579)
....... .++. ..|.+.....+|.|.|+|.|.|....
T Consensus 165 ~~~~~~~-~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~ 205 (218)
T 2rgs_A 165 DTAPVLD-SDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK 205 (218)
T ss_dssp ECCCEEC-TTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred ecccEEC-CCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence 1111111 1221 24556555556799999999998653
No 285
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.76 E-value=4.6e-18 Score=150.08 Aligned_cols=171 Identities=13% Similarity=0.152 Sum_probs=114.4
Q ss_pred CCceEEccCCcEEEEEEE-Eeec-CCeEEEEECCE--Ec---c-------CCCCceEEEcCCCCeEEEEECcCCCCCCeE
Q psy16852 112 LKPVIAEAQSPATLKATV-TGRP-TPSICWYRGKE--EI---L-------PDNGHTMEFNPTTGECVLSISEATPQDEAV 177 (579)
Q Consensus 112 ~~~~~~~~g~~~~l~C~~-~~~p-~~~i~W~~~~~--~~---~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 177 (579)
+..+.+.+|+.++|.|.+ .+.+ .+.|.||+++. .+ . .....++......+..+|.|.+++.+|+|.
T Consensus 7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 86 (216)
T 2xzc_L 7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD 86 (216)
T ss_dssp CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence 456788999999999995 4333 57999999531 11 0 111122322223456789999999999999
Q ss_pred EEEEEEcCCce--eEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCC-eEEEEECCEEec
Q psy16852 178 YSVKAVNTFGR--AECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTP-EVKWFKNGKEIV 253 (579)
Q Consensus 178 Y~C~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~i~ 253 (579)
|+|.+.+..+. ......+.+.. ...+|.+...........|+.++|.|.+.+ .|.+ .+.|+++|..+.
T Consensus 87 Y~C~~~~~~~~~~~~~~~~l~V~~--------~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~ 158 (216)
T 2xzc_L 87 YYCGTWDSSLNPVFGGGTKLEIKR--------TVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQS 158 (216)
T ss_dssp EEEEEECTTSCEEEBCCEEEEECC--------CCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred EEEEEEeCCCcceECCCEEEEEcC--------CCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecC
Confidence 99999998751 11223344421 113555554322222335889999999998 5554 899999999887
Q ss_pred cCceEE----------eCCeEEEEEcccCCCCCeEEEEEEEcCCeee
Q psy16852 254 SKDIET----------KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEA 290 (579)
Q Consensus 254 ~~~~~~----------~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~ 290 (579)
...... ....+.|.|..+..+|+|.|+|.|.|.....
T Consensus 159 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 205 (216)
T 2xzc_L 159 GNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS 205 (216)
T ss_dssp SSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred CCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCC
Confidence 651110 0112479999999999999999999987553
No 286
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.76 E-value=1e-17 Score=151.93 Aligned_cols=183 Identities=17% Similarity=0.206 Sum_probs=121.1
Q ss_pred ceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECC--E---Ec----------cCCCCceEEEcCCCCeEEEEECcCC
Q psy16852 107 KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGK--E---EI----------LPDNGHTMEFNPTTGECVLSISEAT 171 (579)
Q Consensus 107 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~---~~----------~~~~~~~~~~~~~~~~~~l~i~~~~ 171 (579)
.+...+..+.+.+|+.++|.|.+.+.|.+.+.||+.. . .+ ....++....+...+..+|.|.+++
T Consensus 5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~ 84 (256)
T 3tf7_C 5 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVH 84 (256)
T ss_dssp EEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCC
T ss_pred EEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCC
Confidence 3445566788999999999999988889999999832 1 01 1123444444556677899999999
Q ss_pred CCCCeEEEEEEEcCCcee----EEEEEEEEeecc---------ccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc
Q psy16852 172 PQDEAVYSVKAVNTFGRA----ECRANLVLRKAT---------TIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT 238 (579)
Q Consensus 172 ~~d~G~Y~C~~~~~~~~~----~~~~~~~v~~~~---------~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~ 238 (579)
.+|+|.|+|.+.+..+.. .....+.|.... .........+|.+...+....+.+|+.++|.|.+.+.
T Consensus 85 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~ 164 (256)
T 3tf7_C 85 RSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS 164 (256)
T ss_dssp GGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSC
T ss_pred cccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCC
Confidence 999999999999875421 112344443200 0000011235566666777778899999999999876
Q ss_pred CCCeEEEEECC--EE---ecc-------------CceE---EeCCeEEEEEcccCCCCCeEEEEEEEcCCeee
Q psy16852 239 PTPEVKWFKNG--KE---IVS-------------KDIE---TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEA 290 (579)
Q Consensus 239 p~~~v~W~~~~--~~---i~~-------------~~~~---~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~ 290 (579)
.+.+.|++.. .. +.. .... .......|.|.+++.+|+|.|+|.|.|..|..
T Consensus 165 -~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~ 236 (256)
T 3tf7_C 165 -HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQL 236 (256)
T ss_dssp -CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTEE
T ss_pred -ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCcc
Confidence 6799999832 11 100 0000 01234589999999999999999999876643
No 287
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.76 E-value=3e-18 Score=145.02 Aligned_cols=156 Identities=16% Similarity=0.206 Sum_probs=111.2
Q ss_pred cCceeeeCCCCEEEEEEEE--eeCCCeeEEEE--CCEEe----------cCCCCEEEEEeCCEEEEEEcCCCCCCCEEEE
Q psy16852 13 IQPVVSHQEQPALFTCKVE--GHPLPTMTWQK--DGTEL----------HATEHYLITTVESVSTLEIINPTKEDIGVYT 78 (579)
Q Consensus 13 p~~~~v~~G~~~~l~C~~~--~~~~~~v~W~~--~g~~~----------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 78 (579)
+..+.+.+|++|+|.|... +.+.+.|.|++ ++..+ ....++.+. .+++|.|.+++.+|+|.|+
T Consensus 6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~---~ngsL~I~~v~~~DsG~Y~ 82 (182)
T 1hnf_A 6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLF---KNGTLKIKHLKTDDQDIYK 82 (182)
T ss_dssp CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEEC---TTSCEEECSCCGGGCEEEE
T ss_pred ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEEC---CCCCEEECCCChhhCEEEE
Confidence 4568899999999999542 23456899999 88876 234444433 2348999999999999999
Q ss_pred EEEEcCCeeeE--EEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEE
Q psy16852 79 CKATNIGGVAT--CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEF 156 (579)
Q Consensus 79 C~~~~~~g~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 156 (579)
|.+.|..|... ..+.|.|.+.. ..|.+. ..+..+.|.|.+.+.|.+.|.|++++..+ ....
T Consensus 83 c~~~n~~g~~~~~~~~~L~V~~~~---~~P~i~--------~~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~~~----- 145 (182)
T 1hnf_A 83 VSIYDTKGKNVLEKIFDLKIQERV---SKPKIS--------WTCINTTLTCEVMNGTDPELNLYQDGKHL-KLSQ----- 145 (182)
T ss_dssp EEEEETTSCEEEEEEEEEEEECCC---CCCEEE--------EETTTTEEEEECSSCSSCEEEEEESSCEE-EEES-----
T ss_pred EEEEeCCCceeEEEEEEEEEcCcC---CCCEEE--------EccCcEEEEeEccCCCCCEEEEEECCEEC-CCCC-----
Confidence 99999877654 35566776431 122222 13447999999988889999999998877 1111
Q ss_pred cCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy16852 157 NPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANL 195 (579)
Q Consensus 157 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~ 195 (579)
..|.+.. ..+|+|.|+|.|.|..+.......+
T Consensus 146 ------~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~ 177 (182)
T 1hnf_A 146 ------RVITHKW-TTSLSAKFKCTAGNKVSKESSVEPV 177 (182)
T ss_dssp ------SCEEEEC-CSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred ------cEEEEec-ccCCCcEEEEEEEeCCCCcEEccee
Confidence 1233322 4789999999999999877665544
No 288
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.76 E-value=2.1e-18 Score=146.46 Aligned_cols=152 Identities=20% Similarity=0.208 Sum_probs=107.9
Q ss_pred cCceeeeCCCCEEEEEEEEe-eCCCeeEEEEC-CEEec------------CC--CCEEEEEeCCEEEEEEcCCCCCCCEE
Q psy16852 13 IQPVVSHQEQPALFTCKVEG-HPLPTMTWQKD-GTELH------------AT--EHYLITTVESVSTLEIINPTKEDIGV 76 (579)
Q Consensus 13 p~~~~v~~G~~~~l~C~~~~-~~~~~v~W~~~-g~~~~------------~~--~~~~~~~~~~~~~L~i~~~~~~d~G~ 76 (579)
..++.+.+|++|+|.|.+.+ .+.+.|.|+|+ +..+. .. .++ .....+.+|+|.+++.+|+|.
T Consensus 6 ~~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~--~l~~~~~sL~I~~v~~~D~G~ 83 (180)
T 2dru_A 6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRV--DLDKTNGALRIYNVSKEDRGD 83 (180)
T ss_dssp CCEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTE--EECTTTCCEEECSCCGGGCEE
T ss_pred cceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeE--EEeCCCccEEEcCCCHHHCeE
Confidence 45688999999999999844 34579999994 33221 11 222 233345789999999999999
Q ss_pred EEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEEccCCCCceEE
Q psy16852 77 YTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDNGHTME 155 (579)
Q Consensus 77 Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~ 155 (579)
|+|.+.+.. .....+.|.|..++ ..|.+. ..+..++|.|.+ .+ |.+.|.|++++..+...
T Consensus 84 Y~C~v~~~~-~~~~~~~L~V~~~~---~~P~i~--------~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~~------ 144 (180)
T 2dru_A 84 YYMRMLHET-EDQWKITMEVYEMV---SKPMIY--------WECSNATLTCEVLEG-TDVELKLYQGKEHLRSL------ 144 (180)
T ss_dssp EEEEEESSS-EEEEEEEEEEECCC---CCCEEE--------EEGGGTEEEEECSSC-TTCEEEEEETTEEEEEE------
T ss_pred EEEEEEcCC-eEEEEEEEEEECCC---CCCEEE--------ecCCCEEEEEEeCCC-CCCEEEEEECCeECcCC------
Confidence 999998766 55666777776532 122222 245679999999 66 89999999999877511
Q ss_pred EcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEE
Q psy16852 156 FNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECR 192 (579)
Q Consensus 156 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 192 (579)
...+|.+.. .+|+|.|+|.|.|..+.....
T Consensus 145 -----~~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~ 174 (180)
T 2dru_A 145 -----RQKTMSYQW--TNLRAPFKCKAVNRVSQESEM 174 (180)
T ss_dssp -----SSSEEEEEC--SCCSSCEEEEEEETTEEEEEE
T ss_pred -----CCCEEEEEE--hhcCccEEEEEecCcCccccc
Confidence 112455533 789999999999998876544
No 289
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.76 E-value=4.7e-18 Score=147.93 Aligned_cols=168 Identities=13% Similarity=0.029 Sum_probs=113.2
Q ss_pred CCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 184 (579)
+|.+...+. ..+.+|++++|.|.+. .+.+.+.|||++..+....... ..........|.|.+++.+|+|.|+|.+.+
T Consensus 8 ~P~i~~~p~-~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~-~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~ 84 (201)
T 1nkr_A 8 KPSLLAHPG-PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIG-EHHDGVSKANFSISRMTQDLAGTYRCYGSV 84 (201)
T ss_dssp CCEEEEESC-SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEEC-EEETTEEEEEEEESSCCGGGCEEEEEEEEB
T ss_pred CCeEEEEcC-CccCCCCcEEEEEecc-CCCCEEEEEECCCcCCcceeee-ecCCCCceEEEEeccCCcccCeEEEEeEec
Confidence 445554444 5678999999999986 4678999999887543211000 011122346899999999999999999986
Q ss_pred CCc-----eeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc--e
Q psy16852 185 TFG-----RAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD--I 257 (579)
Q Consensus 185 ~~~-----~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~--~ 257 (579)
... .......+.+.. ...+|.+...+. ..+.+|+.++|.|.+.+ +.+.+.|+|+|..+.... .
T Consensus 85 ~~~~~~~~~~s~~~~l~V~~--------~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~ 154 (201)
T 1nkr_A 85 THSPYQVSAPSDPLDIVIIG--------LYEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAG 154 (201)
T ss_dssp TTBTTCCCCCCCCEEEEEEC--------SSCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECE
T ss_pred CCCCccccCCCCCEEEEeec--------cCCCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccc
Confidence 532 112233444432 123456554444 35889999999999875 567999999997654321 1
Q ss_pred EEeC--CeEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852 258 ETKD--NVTKLVIKQTTKKTTGKYEIRVVNEA 287 (579)
Q Consensus 258 ~~~~--~~~~l~i~~~~~~d~G~y~C~a~n~~ 287 (579)
.... ....|.|.+++ |+|.|+|.|.+..
T Consensus 155 ~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~ 184 (201)
T 1nkr_A 155 PKVNGTFQADFPLGPAT--HGGTYRCFGSFHD 184 (201)
T ss_dssp EEETTEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred cccCCceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence 1111 25689999998 9999999998754
No 290
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.76 E-value=1.1e-17 Score=144.30 Aligned_cols=160 Identities=13% Similarity=0.179 Sum_probs=109.2
Q ss_pred CCceEEccCCcEEEEEEEEe-ecCCeEEEEECCEEcc---CCCC-------------ceEEEcCCCCeEEEEECcCCCCC
Q psy16852 112 LKPVIAEAQSPATLKATVTG-RPTPSICWYRGKEEIL---PDNG-------------HTMEFNPTTGECVLSISEATPQD 174 (579)
Q Consensus 112 ~~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~~---~~~~-------------~~~~~~~~~~~~~l~i~~~~~~d 174 (579)
+..+.+.+|++++|.|.+.+ .+.+.|.|++++..+. .... .+.... ..++|.|.+++.+|
T Consensus 5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D 81 (193)
T 2if7_A 5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT---QSYSLQLSNLKMED 81 (193)
T ss_dssp CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC---TTCCEEECSCCGGG
T ss_pred CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC---CCeEEEECCCCccc
Confidence 45567889999999999864 3447999999876542 1110 122222 23579999999999
Q ss_pred CeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCC-eEEEEEEEEcc-CCCeEEEEECCEEe
Q psy16852 175 EAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDS-TVTLEAEYTGT-PTPEVKWFKNGKEI 252 (579)
Q Consensus 175 ~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~-~~~l~C~~~~~-p~~~v~W~~~~~~i 252 (579)
+|.|+|.+.+..+.......+.|... ...|.+.... .....|. .++|.|.+.+. |.+.+.|+++|..+
T Consensus 82 ~G~Y~C~~~~~~~~~~~~~~L~V~~~--------~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l 151 (193)
T 2if7_A 82 TGSYRAQISTKTSAKLSSYTLRILRQ--------LRNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTL 151 (193)
T ss_dssp CEEEEEEEECSSCEEEEEEEEEEECC--------CEEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEE
T ss_pred CceEEEEEEecCCCeEEEEEEEEEcc--------CCCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEc
Confidence 99999999998876555555555311 0113333222 1123455 89999999984 57899999999876
Q ss_pred ccCceEEeCCeEEEEEcccCCC-CCeEEEEEEEcCCeeeEE
Q psy16852 253 VSKDIETKDNVTKLVIKQTTKK-TTGKYEIRVVNEAGEART 292 (579)
Q Consensus 253 ~~~~~~~~~~~~~l~i~~~~~~-d~G~y~C~a~n~~g~~~~ 292 (579)
... ..|.|.....+ |.|.|+|.|.|..|....
T Consensus 152 ~~~--------~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~ 184 (193)
T 2if7_A 152 SSQ--------PNLTVSWDPRISSEQDYTCIAENAVSNLSF 184 (193)
T ss_dssp ESS--------SEEEEEECTTTCSCCEEEEEEEETTEEEEE
T ss_pred CCC--------CeEEEEeccCcCCCCcEEEEEECCCCcccc
Confidence 432 24666544444 899999999999987643
No 291
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.76 E-value=8.1e-19 Score=147.59 Aligned_cols=154 Identities=23% Similarity=0.222 Sum_probs=108.7
Q ss_pred cCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecC--CC--------CEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 13 IQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA--TE--------HYLITTVESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 13 p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~--~~--------~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
+..+.+.+|++|+|.|.+. .|.+.|.|++++..+.. .. +.++.....+.+|.|.+++.+|+|.|+|.+.
T Consensus 2 ~~~v~~~~G~~VtL~c~~~-~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~ 80 (171)
T 1ccz_A 2 SQQIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESP 80 (171)
T ss_dssp EEEEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECT
T ss_pred ccEEEEEcCCCEEEcCCCC-CCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEe
Confidence 3467899999999999984 47789999999875421 00 0122333345789999999999999999998
Q ss_pred cCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCe
Q psy16852 83 NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 162 (579)
Q Consensus 83 ~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~ 162 (579)
+..| ...+.|.|..++ ..|.+.... ....|.|.+.+.|.+.+.|++++..+......
T Consensus 81 n~~~--~~~~~L~V~~~~---~~p~i~~~~--------~~~~L~C~~~~~p~p~i~W~~~~~~l~~~~~~---------- 137 (171)
T 1ccz_A 81 NITD--TMKFFLYVLEMV---SKPMIYWEC--------SNATLTCEVLEGTDVELKLYQGKEHLRSLRQK---------- 137 (171)
T ss_dssp TCCS--CEEEEEEEECCC---CCCEEEEET--------TTTEEEEECSSCSSCEEEEEETTEEEEEESSS----------
T ss_pred CCCC--cEEEEEEEECcC---CCCEEEEec--------CCcEEEEEeCCCCCcEEEEEECCEECcCCcce----------
Confidence 8777 556677776542 123332211 11389999988899999999999877532221
Q ss_pred EEEEECcCCCCCCeEEEEEEEcCCceeEEEE
Q psy16852 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRA 193 (579)
Q Consensus 163 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 193 (579)
.|.+. ...|.|.|+|.|.|..+......
T Consensus 138 -~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~ 165 (171)
T 1ccz_A 138 -TMSYQ--WTNLRAPFKCKAVNRVSQESEME 165 (171)
T ss_dssp -EEEEE--CSCCSSCEEEEEEETTEEEEEEE
T ss_pred -EEEEe--ccCCCceEEEEEEcccCccccee
Confidence 23333 36789999999999988765543
No 292
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.76 E-value=2.2e-18 Score=154.86 Aligned_cols=185 Identities=12% Similarity=0.067 Sum_probs=101.8
Q ss_pred CCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCce-----eEEEEEEEEEEecccCCCCCee
Q psy16852 336 TPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG-----EAVAAATLAVEEKEESGEAPKF 410 (579)
Q Consensus 336 ~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~~~~~~~~p~~ 410 (579)
.+.+.|+|+|..+.................|.|.+++.+|+|.|+|.+.+..+ ..+..+.|.|.... .+|.+
T Consensus 34 ~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~---~~P~l 110 (257)
T 1b6u_A 34 FQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLY---EKPSL 110 (257)
T ss_dssp CSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECSS---CCCEE
T ss_pred CcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEeccCCCccccccCCCEEEecccCC---CCcce
Confidence 45789999886543111000001112345899999999999999999986432 23445677776532 35666
Q ss_pred ecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceee
Q psy16852 411 TKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK 490 (579)
Q Consensus 411 ~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~ 490 (579)
...+. ..+.+|+.++|.|.+.+. .+.|.|+|+|..+........ .
T Consensus 111 ~~~p~-~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~-----------------~---------------- 155 (257)
T 1b6u_A 111 SAQPG-PTVLAGESVTLSCSSRSS-YDMYHLSREGEAHERRFSAGP-----------------K---------------- 155 (257)
T ss_dssp ECSSC-TTCBTTCEEEEEEECSSC-CSEEEEEETTSSCEECCBCBC-----------------C----------------
T ss_pred EccCC-CccCCCCEEEEEEeCCCC-CcEEEEEECCcccCccccccc-----------------c----------------
Confidence 65444 367899999999999865 469999999876633221100 0
Q ss_pred eeeeCCeeEEEEeecccccceeEEEEEEeCCe-----eEEEEEEEEEeeCCcccccccCCccccC-CCceEEecCCcEEE
Q psy16852 491 IMTDGNRSVLLISKITRDQIGDVTCRAENVAG-----SVTCTATLSLLPESEVTDVMESPRFIKT-PETAKVMDGQSVLF 564 (579)
Q Consensus 491 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~~~~~~~v~~~p~~~~~-~~~~~~~~g~~~~l 564 (579)
........|.|.+++ |+|.|+|.|.|..+ .....+.|.|. .+|.+..+ |.......|..+.|
T Consensus 156 -~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~---------g~p~~~~p~~~~~~~~~g~~~~l 223 (257)
T 1b6u_A 156 -VNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVT---------GNPSNSWPSPTEPSSETGNPRHL 223 (257)
T ss_dssp -SSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCB---------CCC--------------------
T ss_pred -cCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEe---------ccCCCCCCCCcccCccCCCeEEE
Confidence 001124568999998 99999999997632 22334555543 55555422 22234567999999
Q ss_pred EEEecc
Q psy16852 565 TAQVGY 570 (579)
Q Consensus 565 ~C~~~~ 570 (579)
.|.+..
T Consensus 224 ~~~~~~ 229 (257)
T 1b6u_A 224 HAAAEQ 229 (257)
T ss_dssp ------
T ss_pred EEEEcc
Confidence 998854
No 293
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.76 E-value=8.3e-18 Score=151.78 Aligned_cols=200 Identities=16% Similarity=0.222 Sum_probs=124.8
Q ss_pred EEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEE--CCEEccCC---CeEEEEECCCCeEEEEEccc
Q psy16852 297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSH--DGTPMKEG---KEVTIYQDTDGLCKLAISEV 371 (579)
Q Consensus 297 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~--~~~~~~~~---~~~~~~~~~~~~~~l~i~~~ 371 (579)
.+.+..|..+.|.|.+...+...+.|+... .+.....+.+.. ++...... .++.+..+..+.++|.|.++
T Consensus 10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v 84 (246)
T 4dzb_B 10 WVISKSGTSVKIECRSLDFQATTMFWYRQF-----PKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSA 84 (246)
T ss_dssp EEEEETTSCEEEEEEESSSCCCSEEEEEEC-----TTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSC
T ss_pred EEEEeCCCcEEEEeEecCCCceEEEEEEEC-----CCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCC
Confidence 355678888888887665554555554310 011111111111 33333322 45555544456779999999
Q ss_pred CCCCCEEEEEEEEcCce----eEEEEEEEEEEecccCCCCCeee-cCCCceeeecCCCeEEEEEEEeeCCC--eEEEeeC
Q psy16852 372 FPENAGLYSCTAVNPVG----EAVAAATLAVEEKEESGEAPKFT-KPLKPVIAEAQSPATLKATVTGRPTP--SICWYRG 444 (579)
Q Consensus 372 ~~~d~G~Y~C~a~n~~g----~~~~~~~l~v~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~ 444 (579)
+.+|+|.|+|.+.+..+ .......|.|........+|.+. ..+....+..|+.++|.|.+.|.|++ .+.|+++
T Consensus 85 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~ 164 (246)
T 4dzb_B 85 HPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN 164 (246)
T ss_dssp CGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred CHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEEC
Confidence 99999999999987643 23344567776532223355554 34444556779999999999997765 8999999
Q ss_pred CEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeeccccc-ceeEEEEEEeCCee
Q psy16852 445 KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQ-IGDVTCRAENVAGS 523 (579)
Q Consensus 445 ~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~ 523 (579)
|..+....+... .........+.|.|.+.. .|.|.....+| .|.|+|.|.|....
T Consensus 165 g~~l~~~~~~~~----------~~~~~~~~~~~g~~~~~s--------------~l~i~~~~~~d~~g~YtC~v~~~~~~ 220 (246)
T 4dzb_B 165 GKEVHSGVCTDP----------QPLKEQPALNDSRYALSS--------------RLRVSATFWQNPRNHFRCQVQFYGLS 220 (246)
T ss_dssp TEEECTTEEECS----------SCEESSTTSTTCCEEEEE--------------EEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred CEECCCCccccc----------ccccccccCCCCCEEEEE--------------EEEECHHHhccCCCeEEEEEEecCCC
Confidence 998854321110 001112223456665443 39999999988 99999999998665
Q ss_pred EE
Q psy16852 524 VT 525 (579)
Q Consensus 524 ~~ 525 (579)
..
T Consensus 221 ~~ 222 (246)
T 4dzb_B 221 EN 222 (246)
T ss_dssp TT
T ss_pred Cc
Confidence 44
No 294
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.76 E-value=1.5e-17 Score=150.51 Aligned_cols=165 Identities=12% Similarity=0.182 Sum_probs=117.6
Q ss_pred CCceEEccCCcEEEEEEEEeec--CCeEEEEECC--EEc---c--------------CCCCceEEEcCCCCeEEEEECcC
Q psy16852 112 LKPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EEI---L--------------PDNGHTMEFNPTTGECVLSISEA 170 (579)
Q Consensus 112 ~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~~---~--------------~~~~~~~~~~~~~~~~~l~i~~~ 170 (579)
+..+.+.+|+.++|.|.+.+.| .+.|.||+++ ..+ . ...+..+..+...+..+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (256)
T 1nqb_A 7 SGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSL 86 (256)
T ss_dssp CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcC
Confidence 4557788999999999998765 5799999942 211 0 12344444444456789999999
Q ss_pred CCCCCeEEEEEEEcCCce---eE--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCC----
Q psy16852 171 TPQDEAVYSVKAVNTFGR---AE--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP---- 241 (579)
Q Consensus 171 ~~~d~G~Y~C~~~~~~~~---~~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---- 241 (579)
+.+|+|.|+|.+.+..|. .. ....+.|. .+|.+...+....+.+|+.++|.|.+.+.|.+
T Consensus 87 ~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~-----------~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~ 155 (256)
T 1nqb_A 87 TSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVS-----------SDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGN 155 (256)
T ss_dssp CGGGCEEEEEEECCTTSSSSCSEECCCEEEEEC-----------CCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSC
T ss_pred ChhhCEEEEEEEeeccCccceeEEcCceeeeec-----------ccccEEecCcEEEEecCCcEEEEeEecCcccccccc
Confidence 999999999999987552 11 12334432 34555555666778999999999999987765
Q ss_pred -eEEEEE--CCEEec-------------cCc--eEEeCCeEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852 242 -EVKWFK--NGKEIV-------------SKD--IETKDNVTKLVIKQTTKKTTGKYEIRVVNEA 287 (579)
Q Consensus 242 -~v~W~~--~~~~i~-------------~~~--~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~ 287 (579)
.+.|++ ++..+. ... .........|.|.+++.+|+|.|+|.|.+..
T Consensus 156 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~ 219 (256)
T 1nqb_A 156 TYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHV 219 (256)
T ss_dssp BCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred eEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCC
Confidence 999999 555331 011 1123456789999999999999999998743
No 295
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.76 E-value=9.9e-19 Score=153.91 Aligned_cols=139 Identities=19% Similarity=0.220 Sum_probs=93.7
Q ss_pred CeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcC-ceeE--EEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEE
Q psy16852 352 KEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNP-VGEA--VAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLK 428 (579)
Q Consensus 352 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~-~g~~--~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~ 428 (579)
.++.... ..+...|.|.++..+|+|.|+|.|.|. .+.. .....|.|... ...+|.+........+.+|+.++|.
T Consensus 58 ~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~--~~~~p~v~~~~~~~~~~~g~~v~L~ 134 (212)
T 1nfd_E 58 ERFSGST-SGTTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRG--PKSSPKVTVFPPSPEELRTNKATLV 134 (212)
T ss_dssp TTEEEEE-ETTEEEEEETTCCGGGCSEEEEEEEETTTTEEEECCCEEEEEECC--CCBCCEEECCCCCHHHHHTTEECCC
T ss_pred ccEEEEe-eCCEEEEEECcCCcccCEEEEEEEEcccCcccccCCceEEEEccC--CCCCCEEEeeCCchHhccCCceEEE
Confidence 3444433 345568999999999999999999962 2211 23345666432 1236666654444445689999999
Q ss_pred EEEEee-CC-CeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecc
Q psy16852 429 ATVTGR-PT-PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKIT 506 (579)
Q Consensus 429 C~~~g~-p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~ 506 (579)
|.+.|. |+ +.|.|+++|..+..+.... .......| |.. .+.|.|.++.
T Consensus 135 C~~~g~~p~~~~v~W~k~g~~~~~~~~~~---------------~~~~~~~~-~~~--------------~s~L~i~~~~ 184 (212)
T 1nfd_E 135 CLVNDFYPGSATVTWKANGATINDGVKTT---------------KPSKQGQN-YMT--------------SSYLSLTADQ 184 (212)
T ss_dssp EEEEEEBSSCCEEEEEETTEEECSSCBCC---------------CCBCSSSC-EEE--------------EEBCCEEHHH
T ss_pred EEEEeeECCccEEEEEECCeEcCCCeecC---------------CceecCCC-ceE--------------EEEEEEchhh
Confidence 999987 55 7999999999886542110 01111122 322 2449999999
Q ss_pred cccceeEEEEEEeCCee
Q psy16852 507 RDQIGDVTCRAENVAGS 523 (579)
Q Consensus 507 ~~d~G~Y~C~a~n~~g~ 523 (579)
.+|+|.|+|.|.|..+.
T Consensus 185 ~~d~G~Y~C~a~n~~~~ 201 (212)
T 1nfd_E 185 WKSHNRVSCQVTHEGET 201 (212)
T ss_dssp HHTCSCEEEEEECTTTT
T ss_pred cCCCCeEEEEEEeCCce
Confidence 99999999999998775
No 296
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.76 E-value=3.2e-18 Score=151.47 Aligned_cols=176 Identities=14% Similarity=0.198 Sum_probs=115.6
Q ss_pred CCceEEccCCcEEEEEEEEeec--CCeEEEEECC--EEcc-----------------CCCCceEEEcCCCCeEEEEECcC
Q psy16852 112 LKPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EEIL-----------------PDNGHTMEFNPTTGECVLSISEA 170 (579)
Q Consensus 112 ~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~l~i~~~ 170 (579)
+.++.+.+|++++|.|.+.+.+ .+.+.||+++ ..+. ...+..+..+...+..+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (219)
T 1c1e_H 7 SGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNL 86 (219)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSC
T ss_pred CCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCC
Confidence 4456788999999999998765 6899999963 2211 01233333333345679999999
Q ss_pred CCCCCeEEEEEEEcCCcee--E--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCC-eEE
Q psy16852 171 TPQDEAVYSVKAVNTFGRA--E--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTP-EVK 244 (579)
Q Consensus 171 ~~~d~G~Y~C~~~~~~~~~--~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~ 244 (579)
+.+|+|.|+|.+.+..+.. . ....+.|... ...+|.+........+.+|+.+.|.|.+.+ .|.+ .+.
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~-------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~ 159 (219)
T 1c1e_H 87 KNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSA-------KTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVT 159 (219)
T ss_dssp CGGGCEEEEEEEEETTTTEEEEECCCEEEEECCC-------CCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEE
T ss_pred CcccCEEEEEEEeccCcccceeecCceEEEEecC-------CCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEE
Confidence 9999999999999876321 1 2234444321 112354443333334678999999999998 8988 999
Q ss_pred EEECCEEeccC---ceEE---eCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEE
Q psy16852 245 WFKNGKEIVSK---DIET---KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGS 295 (579)
Q Consensus 245 W~~~~~~i~~~---~~~~---~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~ 295 (579)
|+++|..+... .... ....+.|.|..... |.|.|+|.|.|..+.......
T Consensus 160 W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~~~~~ 215 (219)
T 1c1e_H 160 WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKVDKK 215 (219)
T ss_dssp EGGGTBCTTEEECCCEESSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEEEEEE
T ss_pred EEeCCcccceEecCCcccCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCccEEEe
Confidence 99998764211 1110 11234688844444 569999999998876554443
No 297
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.76 E-value=9.4e-18 Score=149.62 Aligned_cols=167 Identities=12% Similarity=0.012 Sum_probs=117.1
Q ss_pred CCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 184 (579)
.|.+...+.. .+.+|+.++|.|.+.+ +...+.|||++..+...... .........|.|.+++.+|+|.|+|.+.+
T Consensus 7 kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~---~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 81 (242)
T 1p6f_A 7 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPK---PPERINKVKFYIPDMNSRMAGQYSCIYRV 81 (242)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCS---SCTTCCEEEEEECSCCGGGCEEEEEEEEE
T ss_pred CCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCcccccccc---ccCCcceeEEEecCCCcccCeEEEEEEec
Confidence 4555555555 7889999999999764 45799999998875421100 01123457899999999999999999987
Q ss_pred CCceeE--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCC
Q psy16852 185 TFGRAE--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDN 262 (579)
Q Consensus 185 ~~~~~~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~ 262 (579)
..+... ....+.|.. ...+|.+...+. ..+.+|+.++|.|.+.+. .+.+.|+|+|..+.. .......
T Consensus 82 ~~~~s~~S~~~~L~V~~--------~~~~P~i~~~p~-~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~-~~~~~~~ 150 (242)
T 1p6f_A 82 GELWSEPSNLLDLVVTE--------MYDTPTLSVHPG-PEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV-QRGYGKV 150 (242)
T ss_dssp TTEECCCCCCEEEEEEC--------CSCCCEEEEESC-SEEETTCEEEEEEECTTS-CSEEEEEECSSSCEE-EEEECSS
T ss_pred CCccccCCcceEEEeec--------ccCCCceEccCC-CccCCCCcEEEEEecCCC-CCEEEEEECCCccCc-cccCCCc
Confidence 644322 223444431 113555554443 357899999999998654 459999999876543 1223456
Q ss_pred eEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852 263 VTKLVIKQTTKKTTGKYEIRVVNEA 287 (579)
Q Consensus 263 ~~~l~i~~~~~~d~G~y~C~a~n~~ 287 (579)
...|.|.+++.+|+|.|+|.+.|..
T Consensus 151 ~~~l~I~~v~~~d~G~Y~C~a~n~~ 175 (242)
T 1p6f_A 151 QAEFPLGPVTTAHRGTYRCFGSYNN 175 (242)
T ss_dssp EEEEEEEECCGGGCEEEEEEEEEET
T ss_pred eEEEEeCCCccccCEEEEEEEECCC
Confidence 6889999999999999999998764
No 298
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.76 E-value=2.7e-19 Score=158.65 Aligned_cols=179 Identities=16% Similarity=0.191 Sum_probs=119.7
Q ss_pred cccCceeeeCCCCEEEEEEEEe-eCCC----eeEEEECCEEec-------------CCCCEEEEE-----eCCEEEEEEc
Q psy16852 11 EKIQPVVSHQEQPALFTCKVEG-HPLP----TMTWQKDGTELH-------------ATEHYLITT-----VESVSTLEII 67 (579)
Q Consensus 11 ~~p~~~~v~~G~~~~l~C~~~~-~~~~----~v~W~~~g~~~~-------------~~~~~~~~~-----~~~~~~L~i~ 67 (579)
..|.++.+.+|++++|.|.+.+ .+.+ .+.|+|++.... ...+..+.. ..+..+|.|.
T Consensus 4 ~~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~ 83 (221)
T 3eow_R 4 QAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMF 83 (221)
T ss_dssp CCCCCCCCCCSSCCEEECCCCCCSSSCCCEEEEEECBSSSCSSCCCEEESSSEEECSCSSCEEESSCSSCCCCCCEEECC
T ss_pred eCCCcEEEEeCCCEEEEeeeccCCCCCccceEEEEEeCCCCceEEEEECCCCCCcCCCCcEEEecccCCCCCCCceEEEc
Confidence 3467788999999999999954 3333 499999864221 122333222 1245789999
Q ss_pred CCCCCCCEEEEEEEEcCC-eeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcE-EEEEEEE-eecCCeEEEEECCE
Q psy16852 68 NPTKEDIGVYTCKATNIG-GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPA-TLKATVT-GRPTPSICWYRGKE 144 (579)
Q Consensus 68 ~~~~~d~G~Y~C~~~~~~-g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~-~l~C~~~-~~p~~~i~W~~~~~ 144 (579)
+++.+|+|.|+|.+.+.. +.....+.|.|.. +|.+........ .+|+.+ .|.|.+. +.|.+.|+|++++.
T Consensus 84 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~------~P~~~~~~~~~~-~~g~~~~~l~C~~~~g~P~p~v~W~k~~~ 156 (221)
T 3eow_R 84 GLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLA------KPQNTAEVQKVQ-LTGEPVPMARCVSTGGRPPAQITWHSDLG 156 (221)
T ss_dssp CSSCCCCSCBEEEEEESSSCSCEEECCCCCCC------CCEEEEEEECCC-CCSSSCCEEEEEEESCSSCCCEEEECSSS
T ss_pred cCChHHCeEEEEEEEeCCCCceEEEEEEEEEE------CCCceeecCCcc-cCCceEEEEEEECCCccCCCeeEEEeCCC
Confidence 999999999999999876 6666677777764 333332111111 578888 4999987 88999999998754
Q ss_pred EccCCCCceE-EEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEE
Q psy16852 145 EILPDNGHTM-EFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196 (579)
Q Consensus 145 ~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~ 196 (579)
.......... ........+.|.|.++..+|.|.|+|.|.|..+.......+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~a~n~~~~~~~~~~v~ 209 (221)
T 3eow_R 157 GMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVS 209 (221)
T ss_dssp CCCCCEEECCCCBTTBCCEEEEECCCCSCCCCCCEEEEECCSCSSSCEEEEEC
T ss_pred CCCccceeecCCCCcEEEEEEEEEeCCHHHCCCeEEEEEECCCCCCCeEEEEE
Confidence 3221110000 001112346799999999999999999999887655544443
No 299
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.76 E-value=8.1e-18 Score=148.28 Aligned_cols=180 Identities=17% Similarity=0.213 Sum_probs=112.0
Q ss_pred ccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--E---Ee-------------cCCCCEEEEEeCCEEEEEEcCC
Q psy16852 10 IEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--T---EL-------------HATEHYLITTVESVSTLEIINP 69 (579)
Q Consensus 10 ~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~---~~-------------~~~~~~~~~~~~~~~~L~i~~~ 69 (579)
+..|.++.+.+|++++|.|.+.+.+ .+.+.|||.. . .+ ....++.+.......+|+|.++
T Consensus 3 l~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 82 (215)
T 3nl4_H 3 VEESGGRLVTPGTPLTLACTVSGFSLNTYSMFWVRQAPGKGLQWIGIISNFGVIYYATWAKGRFTISKTSTTVDLKITSP 82 (215)
T ss_dssp EEEECCCEECTTCCEEEEEEEESSCTTTCCEEEEEECTTSCEEEEEEECTTCCEEECGGGTTTEEEEECSSEEEEEESSC
T ss_pred eEcCCCEEEcCCCcEEEEEEecCcccCCCeEEEEEECCCCCeEEEEEEecCCccccCCcccCCEEEEeeCCEEEEEECCC
Confidence 3467889999999999999997633 5689999832 1 11 1235666666667789999999
Q ss_pred CCCCCEEEEEEEEcCCee----eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecC--CeEEEEECC
Q psy16852 70 TKEDIGVYTCKATNIGGV----ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT--PSICWYRGK 143 (579)
Q Consensus 70 ~~~d~G~Y~C~~~~~~g~----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~ 143 (579)
+.+|+|.|+|.+.+..+. ....+.+.|...+ ..+|.+........+.+|+.++|.|.+.+.++ ..+.|++++
T Consensus 83 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g 160 (215)
T 3nl4_H 83 TTEDTATYFCVRKYGSEWGGDLWGPGTLVTVSSGQ--PKAPSVFPLAPCCGDTPSSTVTLGCLVKGYLPEPVTVTWNSGT 160 (215)
T ss_dssp CGGGCEEEEEEEECSSSSCEEEECCCEEEEECSSC--CBCCEEEEECCCTTCCC--CEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred CcccCEEEEEEEecCCCccceEEcCCEEEEEeCCC--cCCCEEEEecCCccccCCCcEEEEEEEeeeeCCCeEEEEeeCC
Confidence 999999999999987542 2234556665321 23444442222234557999999999988654 468899988
Q ss_pred EEccCCCCceEEEcCCCCeEEE-EECcCCCCCCeEEEEEEEcCCceeEEEEE
Q psy16852 144 EEILPDNGHTMEFNPTTGECVL-SISEATPQDEAVYSVKAVNTFGRAECRAN 194 (579)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~l-~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 194 (579)
..+........ .. .++...+ ....+...| |.|+|.|.|..+.......
T Consensus 161 ~~~~~~~~~~~-~~-~~g~~~~~s~l~v~~~d-g~ytC~v~~~~~~~~~~~~ 209 (215)
T 3nl4_H 161 LTNGVRTFPSV-RQ-SSGLYSLSSVVSVTSSS-QPVTCNVAHPATNTKVDKT 209 (215)
T ss_dssp BCTTEEECCCE-EC-TTSCEEEEEEEEECC----CCEEEEEEGGGTEEEEEE
T ss_pred EECCeEecCce-EC-CCCCEEEEEEEEEeccC-CEEEEEEEeCCCCcceEEe
Confidence 64432111111 11 1222111 113355557 9999999998876554443
No 300
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.76 E-value=3e-18 Score=156.91 Aligned_cols=203 Identities=18% Similarity=0.286 Sum_probs=113.1
Q ss_pred CCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECC--EE-
Q psy16852 69 PTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGK--EE- 145 (579)
Q Consensus 69 ~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~~- 145 (579)
.++.|.+.|.|++.+..|.......+ .+...+..+.+.+|++++|.|.+.+ +.+.+.|||.. ..
T Consensus 3 ~~~~~~~~y~~~~~~~~g~~~~~~~~------------~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~ 69 (270)
T 3qib_D 3 NERADLIAYLKQATKGGGGSGGGGGM------------KVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEF 69 (270)
T ss_dssp -------------------------C------------CCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCE
T ss_pred chhhhHHHHHHHHhccCCccccccce------------eEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCc
Confidence 45789999999999876654433222 3334456678899999999999865 77899999821 10
Q ss_pred --ccC-CCC---------c-eEEEc-CCCCeEEEEECcCCCCCCeEEEEEEEcCCc----eeEEEEEEEEeeccccCCCC
Q psy16852 146 --ILP-DNG---------H-TMEFN-PTTGECVLSISEATPQDEAVYSVKAVNTFG----RAECRANLVLRKATTIDKPR 207 (579)
Q Consensus 146 --~~~-~~~---------~-~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~~~v~~~~~~~~~~ 207 (579)
+.. ... . ++... ...+..+|.|.+++.+|+|.|+|.+.+... .......+.+... ..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~-----~~ 144 (270)
T 3qib_D 70 KFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLED-----LK 144 (270)
T ss_dssp EEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESC-----ST
T ss_pred EEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccc-----cc
Confidence 000 000 0 22221 234568999999999999999999986421 1112233444311 01
Q ss_pred ccCCCeEec-cCCceeeCCCCeEEEEEEEEc-cCCC-eEEEEECCEEeccCceEE--------------eCCeEEEEEcc
Q psy16852 208 VLEAPTIVR-PLQALLVPKDSTVTLEAEYTG-TPTP-EVKWFKNGKEIVSKDIET--------------KDNVTKLVIKQ 270 (579)
Q Consensus 208 ~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~i~~~~~~~--------------~~~~~~l~i~~ 270 (579)
...+|.+.. .+....+..|+.++|.|.+.+ .|.+ .+.|+++|..+....... ....+.|.|..
T Consensus 145 ~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~ 224 (270)
T 3qib_D 145 NVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSA 224 (270)
T ss_dssp TCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEH
T ss_pred cccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcH
Confidence 112444332 233333556999999999998 6666 899999999986533111 11125578888
Q ss_pred cCCCC-CeEEEEEEEcCCee
Q psy16852 271 TTKKT-TGKYEIRVVNEAGE 289 (579)
Q Consensus 271 ~~~~d-~G~y~C~a~n~~g~ 289 (579)
...+| .|.|+|.|.|....
T Consensus 225 ~~~~d~~g~YtC~v~~~~l~ 244 (270)
T 3qib_D 225 TFWQNPRNHFRCQVQFYGLS 244 (270)
T ss_dssp HHHHSTTCEEEEEEEECCBC
T ss_pred HHhccCCCeEEEEEEecCCC
Confidence 87777 99999999987654
No 301
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.76 E-value=1.5e-17 Score=149.27 Aligned_cols=148 Identities=10% Similarity=0.124 Sum_probs=90.9
Q ss_pred eEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeE-----EEEEEEEEEecccCCC------CCeeecCCCceeeec
Q psy16852 353 EVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEA-----VAAATLAVEEKEESGE------APKFTKPLKPVIAEA 421 (579)
Q Consensus 353 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-----~~~~~l~v~~~~~~~~------~p~~~~~~~~~~~~~ 421 (579)
++.+........+|.|.++..+|+|.|+|.|.|..|.. .....|.|...+.... .+.+...+....+.+
T Consensus 62 r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~ 141 (238)
T 2p1y_A 62 GYKASRPSQENFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWE 141 (238)
T ss_dssp TCEEECCSSSBCEEEESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEET
T ss_pred eEEEEccCCceEEEEEecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeC
Confidence 34443333445689999999999999999999976521 1344677765321000 014555566678999
Q ss_pred CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee--eeCCeeE
Q psy16852 422 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM--TDGNRSV 499 (579)
Q Consensus 422 g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~--~~~~~~~ 499 (579)
|+.++|.|.+.+.|.+.+.|+|++..- .....+... .+. ... ...++.+. .....+.
T Consensus 142 G~~v~L~C~~~~~p~~~i~W~k~~~~~--~~~~~~~~~-~~~---------~~~---------~~~r~~~~~~~~~~~~~ 200 (238)
T 2p1y_A 142 GETAILNCSYENSAFDYFPWYQQFPGE--GPALLISIL-SVS---------DKK---------EDGRFTIFFNKREKKLS 200 (238)
T ss_dssp TSCEEEEEECCCTTCCEEEEEEECTTS--CCEEEEEEE-TTC---------SEE---------EETTEEEEEETTTTEEE
T ss_pred CCeEEEEEEEecCCCCcEEEEEECCCC--CCEEEEEEc-cCC---------Ccc---------cCCceEEEecCCCCeEE
Confidence 999999999999999999999964100 000000000 000 000 01112222 2345677
Q ss_pred EEEeecccccceeEEEEEEeCC
Q psy16852 500 LLISKITRDQIGDVTCRAENVA 521 (579)
Q Consensus 500 l~i~~~~~~d~G~Y~C~a~n~~ 521 (579)
|+|.+++.+|+|.|+|.|.|..
T Consensus 201 L~I~~v~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 201 LHIADSQPGDSATYFCAAIDTN 222 (238)
T ss_dssp EEETTCCGGGCEEEEEEEEETT
T ss_pred EEEcCCCHHHCEEEEEEEeeCC
Confidence 9999999999999999999984
No 302
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.75 E-value=1.5e-17 Score=149.22 Aligned_cols=182 Identities=20% Similarity=0.246 Sum_probs=119.4
Q ss_pred CccccccCceeeeCCCCEEEEEEEEee--CCCeeEEEECC--E---Eec--------------CCCCEEEEEeC--CEEE
Q psy16852 7 PRFIEKIQPVVSHQEQPALFTCKVEGH--PLPTMTWQKDG--T---ELH--------------ATEHYLITTVE--SVST 63 (579)
Q Consensus 7 p~~~~~p~~~~v~~G~~~~l~C~~~~~--~~~~v~W~~~g--~---~~~--------------~~~~~~~~~~~--~~~~ 63 (579)
+.+...|..+.+.+|++++|.|.+.+. +...+.|||+. . .+. ...++.+.... ...+
T Consensus 2 ~~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~ 81 (242)
T 1hxm_B 2 GHLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTST 81 (242)
T ss_dssp CEEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEE
T ss_pred CccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEE
Confidence 456778899999999999999999875 55689999943 2 110 23455554433 4789
Q ss_pred EEEcCCCCCCCEEEEEEEEcCCe-----e--eEEEEEEEEEecccC-CCCC--ceecCCCceEEccCCcEEEEEEEEee-
Q psy16852 64 LEIINPTKEDIGVYTCKATNIGG-----V--ATCSANLIVLEKEES-GEAP--KFTKPLKPVIAEAQSPATLKATVTGR- 132 (579)
Q Consensus 64 L~i~~~~~~d~G~Y~C~~~~~~g-----~--~~~~~~~~v~~~~~~-~~~~--~~~~~~~~~~~~~g~~~~l~C~~~~~- 132 (579)
|+|.+++.+|+|.|+|.+.+... . ....+.|.|...+.. ..+| .+.. +....+.+|+.++|.|.+.++
T Consensus 82 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~-p~~~~~~~g~~v~L~C~~~g~~ 160 (242)
T 1hxm_B 82 LTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFL-PSIAETKLQKAGTYLCLLEKFF 160 (242)
T ss_dssp EEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCC-CCGGGGGSSSCEEEEEEEEEES
T ss_pred EEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEEC-CChhhcccCCCceEEEEEeeEE
Confidence 99999999999999999987521 1 122457777653210 0011 1221 233345679999999999887
Q ss_pred cC-CeEEEEECCE-EccCCC-CceEEEcC-CCCeEEEEECcCCCCCCeEEEEEEEcCCceeEE
Q psy16852 133 PT-PSICWYRGKE-EILPDN-GHTMEFNP-TTGECVLSISEATPQDEAVYSVKAVNTFGRAEC 191 (579)
Q Consensus 133 p~-~~i~W~~~~~-~~~~~~-~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 191 (579)
|. +.|.|++++. .+.... ......+. ......|.|..... + |.|+|.+.|..+....
T Consensus 161 P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~ 221 (242)
T 1hxm_B 161 PDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGV 221 (242)
T ss_dssp SCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGS
T ss_pred CCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCc
Confidence 54 7999999987 453221 11111000 00124688887765 4 9999999998776533
No 303
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.75 E-value=2.4e-17 Score=128.46 Aligned_cols=103 Identities=24% Similarity=0.307 Sum_probs=92.7
Q ss_pred cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
...||.|...|.++.+.+|+.++|.|.+.|.|.+.+.|+|+|..+....++.+........|.|.+++.+|+|.|+|.|.
T Consensus 4 ~~~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 83 (114)
T 2cqv_A 4 GSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVE 83 (114)
T ss_dssp CCCCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEE
T ss_pred CCCCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEE
Confidence 45799999999999999999999999999999999999999999988888888777778899999999999999999999
Q ss_pred cCCeeeEEEEEEEEEecccCCCC
Q psy16852 83 NIGGVATCSANLIVLEKEESGEA 105 (579)
Q Consensus 83 ~~~g~~~~~~~~~v~~~~~~~~~ 105 (579)
|..|.....+.|.|.+.+.++..
T Consensus 84 N~~g~~~~~~~l~V~~~p~~P~~ 106 (114)
T 2cqv_A 84 NKLGSRQAQVNLTVVDKPDPPAG 106 (114)
T ss_dssp CSSCEEECCEEEEEECSCSCCCC
T ss_pred ECCCcEEEEEEEEEECCCCCCCC
Confidence 99999988999999887654433
No 304
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=99.75 E-value=2.2e-15 Score=158.30 Aligned_cols=352 Identities=14% Similarity=0.137 Sum_probs=205.6
Q ss_pred CCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCC-CCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852 120 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEAT-PQDEAVYSVKAVNTFGRAECRANLVLR 198 (579)
Q Consensus 120 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~~~v~ 198 (579)
+..+.|.|.+.|.|.+.+.|.+++..+.... ...+.|..+. ...++.|+|.+.+..|...... +.+.
T Consensus 91 ~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~-----------~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~-v~~~ 158 (731)
T 2v5y_A 91 PGLLNVYVKVNNGPLGNPIWNISGDPTRTWN-----------RAELAISTFWPNFYQVIFEVITSGHQGYLAIDE-VKVL 158 (731)
T ss_dssp SEEEEEEEEETTCCCCSEEEEECCCCCSSCE-----------EEEEEECCCTTSCEEEEEEEEECSSCCEEEECC-BEEE
T ss_pred cceEEEEEecCCCCccceeEEEeCCcCCcee-----------EEEEEEeecCCCceEEEEEEEecCCceEEEEee-EEee
Confidence 4589999999999999999999987653211 1246666542 3334788898777777544321 1111
Q ss_pred eccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEE-EE--ECCEEeccCceEEe---CCeEEEEEcccC
Q psy16852 199 KATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVK-WF--KNGKEIVSKDIETK---DNVTKLVIKQTT 272 (579)
Q Consensus 199 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~-W~--~~~~~i~~~~~~~~---~~~~~l~i~~~~ 272 (579)
. .....+|.+. .+....+.+|+.+.|.|.+.|.|.+.+. |+ ++|+.+........ .....|.|.++.
T Consensus 159 ~------~~~~~~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~ 231 (731)
T 2v5y_A 159 G------HPCTRTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTT 231 (731)
T ss_dssp S------SCCSSSCEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCC
T ss_pred e------cccccccccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccc
Confidence 1 0123456665 4456788999999999999999999887 88 67776654321111 124689999999
Q ss_pred CCCCeEEEEEEEcCCee-eEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeee-CCC--eEEEEECCEEc
Q psy16852 273 KKTTGKYEIRVVNEAGE-ARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGK-PTP--LVTWSHDGTPM 348 (579)
Q Consensus 273 ~~d~G~y~C~a~n~~g~-~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~-p~~--~i~W~~~~~~~ 348 (579)
..|.|.|+|.|.|..|. ......+.|...+.....+...........+.|.... ..|. |.. .+.|...+.
T Consensus 232 ~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~~~~~~~~v~l~w~~~~----~~g~~~i~~Y~v~~~~~~~-- 305 (731)
T 2v5y_A 232 KRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANS----INGDGPIVAREVEYCTASG-- 305 (731)
T ss_dssp TTTCEEEEEEEEETTEEEECCCEEEEEECCCCBSSCCEEEEECSSCEEEECCCSS----BSSCSCCCEEEEEEEESSS--
T ss_pred cccCeEEEEEEECCCCCcceeeEEEEEecCCCCCCCcceeccCCceEEEEeCCcc----cCCCCccEEEEEEEEECCC--
Confidence 99999999999999997 5556677776554432222222223334445553321 1121 111 466655421
Q ss_pred cCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEE--cCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeE
Q psy16852 349 KEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAV--NPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPAT 426 (579)
Q Consensus 349 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~--n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 426 (579)
.......... ..+.|.++...+.+.|+|.|. |..|....+..+.+...... + .+.+..
T Consensus 306 ---~~~~~~~~~~--~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~--p-------------~~~P~~ 365 (731)
T 2v5y_A 306 ---SWNDRQPVDS--TSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCAD--P-------------MRGPRK 365 (731)
T ss_dssp ---SCEEEEECCS--SEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCC--C-------------SCCCEE
T ss_pred ---CceEEeccCc--ceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecCCC--C-------------CCCCce
Confidence 1222222222 378999999999999999999 99987765544444432110 0 111223
Q ss_pred EEEEEEeeCCCeEEEeeCCEEcCC--CCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852 427 LKATVTGRPTPSICWYRGKEEILP--DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK 504 (579)
Q Consensus 427 l~C~~~g~p~~~v~W~~~~~~l~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~ 504 (579)
|...........+.|......... ...+.+.+.... ......+. ...+........++|.+
T Consensus 366 ~~~~~~~~~sv~l~W~~p~~~~~~~~~~~y~v~y~~~~-----------~~~~~~~~------~~~~~~~~~~~~~~i~~ 428 (731)
T 2v5y_A 366 LEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQV-----------GGQEQVRE------EVSWDTENSHPQHTITN 428 (731)
T ss_dssp EEEEEECSSCEEEEEECCCHHHHCSSSCEEEEEEEEES-----------SSSEEEEE------EEECCSSCSSCEEEECS
T ss_pred eEEEeccCCeEEEEEECCCcccccceeeeEEEEEEEcc-----------CCCCccce------eEEEEecCCcceEEECC
Confidence 333333333446777654221111 112222211000 00000000 00112234455688999
Q ss_pred cccccceeEEEEEEeCCeeEEEEEEEEEee
Q psy16852 505 ITRDQIGDVTCRAENVAGSVTCTATLSLLP 534 (579)
Q Consensus 505 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 534 (579)
+.......|+..|.|..|... +..+.+..
T Consensus 429 L~p~t~Y~~~V~A~n~~G~s~-S~~~~~~T 457 (731)
T 2v5y_A 429 LSPYTNVSVKLILMNPEGRKE-SQELIVQT 457 (731)
T ss_dssp CCSSCEEEEEEEEECSSCEEE-CCCEEEEC
T ss_pred CCCCCEEEEEEEEEcCCCCCC-CceEEEEc
Confidence 999999999999999999864 55566553
No 305
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=99.75 E-value=2.4e-17 Score=151.44 Aligned_cols=183 Identities=17% Similarity=0.217 Sum_probs=122.2
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC--EE---e----------c----CCCCEEEEEe-CCEEEEE
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG--TE---L----------H----ATEHYLITTV-ESVSTLE 65 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g--~~---~----------~----~~~~~~~~~~-~~~~~L~ 65 (579)
.+.+...|.++.+.+|++++|.|.+.+.+.+.+.|||++ .. + . ...++.+... ....+|.
T Consensus 24 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~ 103 (279)
T 2wbj_D 24 GAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT 103 (279)
T ss_dssp CCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred cceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence 466777889999999999999999977777799999964 11 1 0 1235554432 4567999
Q ss_pred EcCCCCCCCEEEEEEEEcCCe------eeEEEEEEEEEecccCCCCCceec-CCCceEEccCCcEEEEEEEEee-cC-Ce
Q psy16852 66 IINPTKEDIGVYTCKATNIGG------VATCSANLIVLEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGR-PT-PS 136 (579)
Q Consensus 66 i~~~~~~d~G~Y~C~~~~~~g------~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~-p~-~~ 136 (579)
|.+++.+|+|.|+|.+.+..+ .....+.+.|........+|.+.. .+....+.+|+.++|.|.+.+. |+ +.
T Consensus 104 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~ 183 (279)
T 2wbj_D 104 VTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVE 183 (279)
T ss_dssp ESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEE
T ss_pred EccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcE
Confidence 999999999999999998321 112335677765322223444432 2233334579999999999887 43 69
Q ss_pred EEEEECCEEccCCCCce---EE-Ec-CCCC----eEEEEECcCCCCC-CeEEEEEEEcCCce
Q psy16852 137 ICWYRGKEEILPDNGHT---ME-FN-PTTG----ECVLSISEATPQD-EAVYSVKAVNTFGR 188 (579)
Q Consensus 137 i~W~~~~~~~~~~~~~~---~~-~~-~~~~----~~~l~i~~~~~~d-~G~Y~C~~~~~~~~ 188 (579)
|.|++++..+....... .. .. ..++ ...|.|......| .|.|+|.+.|....
T Consensus 184 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~ 245 (279)
T 2wbj_D 184 LSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS 245 (279)
T ss_dssp EEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBC
T ss_pred EEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCC
Confidence 99999998875432110 00 00 0122 1358888887764 77899999987543
No 306
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.75 E-value=6.3e-18 Score=149.86 Aligned_cols=175 Identities=13% Similarity=0.127 Sum_probs=117.9
Q ss_pred CceEEccCCcEEEEEEEEeec--CCeEEEEECC--EE---cc----------------CCCCceEEEcCCCCeEEEEECc
Q psy16852 113 KPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EE---IL----------------PDNGHTMEFNPTTGECVLSISE 169 (579)
Q Consensus 113 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~---~~----------------~~~~~~~~~~~~~~~~~l~i~~ 169 (579)
.++.+.+|+.++|.|.+.+.+ .+.+.||++. .. +. ...+..+..+...+..+|.|.+
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 87 (222)
T 1q9r_B 8 GGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNT 87 (222)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred CceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECc
Confidence 345778999999999998765 6899999853 11 10 0123344443345678999999
Q ss_pred CCCCCCeEEEEEEEcCCc-----eeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCC-e
Q psy16852 170 ATPQDEAVYSVKAVNTFG-----RAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTP-E 242 (579)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~ 242 (579)
++.+|+|.|+|.+.+..+ .......+.|... ...+|.+........+.+|+.++|.|.+.+. |.+ .
T Consensus 88 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~-------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~ 160 (222)
T 1q9r_B 88 LRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAA-------KTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVT 160 (222)
T ss_dssp CCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSS-------CCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCE
T ss_pred CCcccCeEEEEEEeccCCcccceEeCCceEEEeccC-------CCCCCeEEEccccccccCCCcEEEEEEEccEECCCCE
Confidence 999999999999998653 1112234444321 1134554433322335689999999999985 888 9
Q ss_pred EEEEECCEEeccCc--eE----EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEE
Q psy16852 243 VKWFKNGKEIVSKD--IE----TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGS 295 (579)
Q Consensus 243 v~W~~~~~~i~~~~--~~----~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~ 295 (579)
+.|+++|..+.... .. .....+.|.|.++..+| |.|+|.|.|..|.......
T Consensus 161 v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~ 218 (222)
T 1q9r_B 161 VTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKK 218 (222)
T ss_dssp EEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred EEEecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEe
Confidence 99999987653211 00 11223568999999889 9999999999887654443
No 307
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=99.75 E-value=3.3e-17 Score=145.06 Aligned_cols=174 Identities=11% Similarity=0.157 Sum_probs=115.8
Q ss_pred ccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--EE---e---c-------------CCCCEEEEEe--CCEEEE
Q psy16852 10 IEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--TE---L---H-------------ATEHYLITTV--ESVSTL 64 (579)
Q Consensus 10 ~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~~---~---~-------------~~~~~~~~~~--~~~~~L 64 (579)
+..|.++.+.+|++|+|.|.+.+.+ ...+.|||.. .. + . ...++.+... ....+|
T Consensus 4 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 83 (221)
T 3m8o_H 4 LVESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFL 83 (221)
T ss_dssp EEEESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEE
T ss_pred EEccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEE
Confidence 3457788999999999999998643 4689999832 11 1 0 1245555443 456789
Q ss_pred EEcCCCCCCCEEEEEEEEcCC--eeeEEEEEEEEEecccCCCCCcee-cCCCceEEccCCcEEEEEEEEe-ecC--CeEE
Q psy16852 65 EIINPTKEDIGVYTCKATNIG--GVATCSANLIVLEKEESGEAPKFT-KPLKPVIAEAQSPATLKATVTG-RPT--PSIC 138 (579)
Q Consensus 65 ~i~~~~~~d~G~Y~C~~~~~~--g~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~-~p~--~~i~ 138 (579)
+|.+++.+|+|.|+|.+.+.. ......+.+.|...+ ..+|.+. ..+... .+|+.++|.|.+.+ .|. +.+.
T Consensus 84 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~--~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~ 159 (221)
T 3m8o_H 84 QMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSAS--PTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVT 159 (221)
T ss_dssp EECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCC--CBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEE
T ss_pred EECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCC--CCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEE
Confidence 999999999999999998763 223334566665321 2234443 222222 68999999999987 665 4999
Q ss_pred EEECCEEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852 139 WYRGKEEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGR 188 (579)
Q Consensus 139 W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 188 (579)
|++++..+....... .....++ .+.|.|......|.|.|+|.|.|..+.
T Consensus 160 W~~~g~~~~~~~~~~-~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~ 212 (221)
T 3m8o_H 160 WSESGQGVTARNFPP-SQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNP 212 (221)
T ss_dssp ESCCSTTCEEEECCC-EECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSC
T ss_pred EEECCEECceEEcCc-eeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCC
Confidence 999886552110000 0000111 146999999999999999999998654
No 308
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.75 E-value=1.2e-17 Score=151.46 Aligned_cols=174 Identities=13% Similarity=0.120 Sum_probs=115.4
Q ss_pred ceEEccCCcEEEEEEEEeec--CCeEEEEECC--E---Ecc-------------CCCCceEEEcCCCCeEEEEECcCCCC
Q psy16852 114 PVIAEAQSPATLKATVTGRP--TPSICWYRGK--E---EIL-------------PDNGHTMEFNPTTGECVLSISEATPQ 173 (579)
Q Consensus 114 ~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~---~~~-------------~~~~~~~~~~~~~~~~~l~i~~~~~~ 173 (579)
.+.+.+|+.++|.|.+.+.| .+.|.||+++ . .+. ...++.+..+...+..+|.|.+++.+
T Consensus 9 ~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~ 88 (257)
T 1f3r_B 9 PGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTD 88 (257)
T ss_dssp CSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTT
T ss_pred CccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCcc
Confidence 45688999999999998875 6899999852 1 110 12334444443456789999999999
Q ss_pred CCeEEEEEEEcCCc-------eeE--EEEEEEEeeccccC----CCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCC
Q psy16852 174 DEAVYSVKAVNTFG-------RAE--CRANLVLRKATTID----KPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPT 240 (579)
Q Consensus 174 d~G~Y~C~~~~~~~-------~~~--~~~~~~v~~~~~~~----~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~ 240 (579)
|+|.|+|.+.+..| ... ....+.|....... ......++.+...+....+.+|+.++|.|.+.+.+.
T Consensus 89 DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~ 168 (257)
T 1f3r_B 89 DTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNIN 168 (257)
T ss_dssp CCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCCB
T ss_pred cCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcCC
Confidence 99999999999853 111 12344443210000 000001122333345566889999999999998888
Q ss_pred CeEEEEE--CCEEec-------------cCce--EEeCCeEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852 241 PEVKWFK--NGKEIV-------------SKDI--ETKDNVTKLVIKQTTKKTTGKYEIRVVNEA 287 (579)
Q Consensus 241 ~~v~W~~--~~~~i~-------------~~~~--~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~ 287 (579)
+.+.|++ +|..+. .... ........|.|.+++.+|+|.|+|.|.|..
T Consensus 169 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 232 (257)
T 1f3r_B 169 NYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNG 232 (257)
T ss_dssp TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred CcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCC
Confidence 8999999 554321 0111 112455689999999999999999999864
No 309
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.75 E-value=7.5e-18 Score=152.51 Aligned_cols=176 Identities=14% Similarity=0.154 Sum_probs=118.4
Q ss_pred ceecCCCceEEccCCcEEEEEEEEeec-----CCeEEEEECCE--E---cc-------CCCCceEEEcCCCCeEEEEECc
Q psy16852 107 KFTKPLKPVIAEAQSPATLKATVTGRP-----TPSICWYRGKE--E---IL-------PDNGHTMEFNPTTGECVLSISE 169 (579)
Q Consensus 107 ~~~~~~~~~~~~~g~~~~l~C~~~~~p-----~~~i~W~~~~~--~---~~-------~~~~~~~~~~~~~~~~~l~i~~ 169 (579)
.+...+..+.+.+|++++|.|.+.+.+ .+.|.||+++. . +. .....++......+..+|.|.+
T Consensus 36 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 115 (252)
T 3bkj_L 36 LMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISR 115 (252)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred EEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECC
Confidence 344456677889999999999998877 58999999541 1 10 1111222222234567899999
Q ss_pred CCCCCCeEEEEEEEcCCceeE-EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCC-eEEEE
Q psy16852 170 ATPQDEAVYSVKAVNTFGRAE-CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTP-EVKWF 246 (579)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~ 246 (579)
++.+|+|.|+|.+.+..+... ....+.|.. ...+|.+...+....+.+|+.++|.|.+.+ .|.+ .+.|+
T Consensus 116 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~--------~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~ 187 (252)
T 3bkj_L 116 VEAEDLGVYYCFQASLVPLTFGAGTKLELKR--------ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWK 187 (252)
T ss_dssp CCGGGCEEEEEEECSBSSCEECCCEEEEECC--------CCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEE
T ss_pred CCcccCEEEEEEEEcCCccEECCCEEEEEeC--------CCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEE
Confidence 999999999999988754321 122344431 113455554333223346899999999998 4554 89999
Q ss_pred ECCEEeccC-ceE---------EeCCeEEEEEcccCCCCCeEEEEEEEcCCeee
Q psy16852 247 KNGKEIVSK-DIE---------TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEA 290 (579)
Q Consensus 247 ~~~~~i~~~-~~~---------~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~ 290 (579)
++|..+... ... .....+.|.|.++..+|+|.|+|.|.|.....
T Consensus 188 k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 241 (252)
T 3bkj_L 188 IDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 241 (252)
T ss_dssp ETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred ECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence 999988655 100 01123568999999999999999999987553
No 310
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=99.74 E-value=2.1e-17 Score=149.51 Aligned_cols=178 Identities=17% Similarity=0.173 Sum_probs=117.1
Q ss_pred cccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--EEe------c-----------CCCCEEEEEe--CCEEEEE
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--TEL------H-----------ATEHYLITTV--ESVSTLE 65 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~~~------~-----------~~~~~~~~~~--~~~~~L~ 65 (579)
.+..|.++.+.+|++++|.|.+.+.+ .+.+.|||+. ..+ . ...++.+... ....+|+
T Consensus 9 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 88 (261)
T 2xqy_G 9 QLQQPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQ 88 (261)
T ss_dssp EEECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred eEECCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEE
Confidence 34457889999999999999998765 5689999963 211 0 1245555443 3568999
Q ss_pred EcCCCCCCCEEEEEEEEcCCe-e--eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cCC-eEEEE
Q psy16852 66 IINPTKEDIGVYTCKATNIGG-V--ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP-SICWY 140 (579)
Q Consensus 66 i~~~~~~d~G~Y~C~~~~~~g-~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~ 140 (579)
|.+++.+|+|.|+|.+.+..+ . ....+.|.|.... ..+|.+........+.+|+.++|.|.+.+. |.+ .|.|+
T Consensus 89 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~--~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~ 166 (261)
T 2xqy_G 89 LSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAK--TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWN 166 (261)
T ss_dssp ECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSC--CBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEG
T ss_pred EcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCC--CCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEe
Confidence 999999999999999998642 1 1133567775421 123443322222235679999999999875 665 99999
Q ss_pred ECCEEccCCCCceEEEc-CCCCeEEEEECcCCCCCCeEEEEEEEcCCcee
Q psy16852 141 RGKEEILPDNGHTMEFN-PTTGECVLSISEATPQDEAVYSVKAVNTFGRA 189 (579)
Q Consensus 141 ~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (579)
+++..+........... .....+.|.|..+..+| |.|+|.+.|.....
T Consensus 167 k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~ 215 (261)
T 2xqy_G 167 SGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASST 215 (261)
T ss_dssp GGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTE
T ss_pred cCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCc
Confidence 98865421111111111 00112579999988888 99999999876543
No 311
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.74 E-value=2.3e-17 Score=139.57 Aligned_cols=157 Identities=17% Similarity=0.285 Sum_probs=108.3
Q ss_pred EEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEE--CCEEc----------cCCCeEEEEECCCCeE
Q psy16852 297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSH--DGTPM----------KEGKEVTIYQDTDGLC 364 (579)
Q Consensus 297 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~--~~~~~----------~~~~~~~~~~~~~~~~ 364 (579)
.|....|+.+.|.|.... .+.+.+.|.|++ ++..+ ....++.+. .++
T Consensus 8 ~v~g~~G~sv~L~~~~~~-----------------~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~--~ng-- 66 (182)
T 1hnf_A 8 ETWGALGQDINLDIPSFQ-----------------MSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLF--KNG-- 66 (182)
T ss_dssp EEEEETTSCEEECCTTCC-----------------CCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEEC--TTS--
T ss_pred EEEEecCCCEEEeCCccc-----------------ccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEEC--CCC--
Confidence 355667788888873211 122345788888 77665 234444443 233
Q ss_pred EEEEcccCCCCCEEEEEEEEcCceeEE--EEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEe
Q psy16852 365 KLAISEVFPENAGLYSCTAVNPVGEAV--AAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWY 442 (579)
Q Consensus 365 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~ 442 (579)
+|.|.+++.+|+|.|+|.|.|..|... ..+.|.|... ...|.+.. .+..++|+|.+.+.|.+.+.|+
T Consensus 67 sL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~---~~~P~i~~--------~~~~v~L~C~~~~~p~~~~~W~ 135 (182)
T 1hnf_A 67 TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQER---VSKPKISW--------TCINTTLTCEVMNGTDPELNLY 135 (182)
T ss_dssp CEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEECC---CCCCEEEE--------ETTTTEEEEECSSCSSCEEEEE
T ss_pred CEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEcCc---CCCCEEEE--------ccCcEEEEeEccCCCCCEEEEE
Confidence 799999999999999999999888654 4556777642 12444432 2447999999999999999999
Q ss_pred eCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCe
Q psy16852 443 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAG 522 (579)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 522 (579)
++|..+ .... ..|.+. ...+|+|.|+|.|.|..|
T Consensus 136 ~~g~~l-~~~~--------------------------------------------~~i~~~-~~~~d~G~Y~C~a~N~~~ 169 (182)
T 1hnf_A 136 QDGKHL-KLSQ--------------------------------------------RVITHK-WTTSLSAKFKCTAGNKVS 169 (182)
T ss_dssp ESSCEE-EEES--------------------------------------------SCEEEE-CCSCEEEEEEEEEECSSC
T ss_pred ECCEEC-CCCC--------------------------------------------cEEEEe-cccCCCcEEEEEEEeCCC
Confidence 998776 1100 012222 246889999999999999
Q ss_pred eEEEEEEEE
Q psy16852 523 SVTCTATLS 531 (579)
Q Consensus 523 ~~~~~~~l~ 531 (579)
.......+.
T Consensus 170 ~~~s~~~~~ 178 (182)
T 1hnf_A 170 KESSVEPVS 178 (182)
T ss_dssp EEEEEEEEE
T ss_pred CcEEcceec
Confidence 988777664
No 312
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.74 E-value=1.4e-17 Score=150.88 Aligned_cols=259 Identities=10% Similarity=0.040 Sum_probs=100.0
Q ss_pred CCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEE
Q psy16852 112 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAEC 191 (579)
Q Consensus 112 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 191 (579)
+....+.+|+.+.|.|.+....+..+.|...-..... .........+.+.++..+ |.|+|++.........
T Consensus 6 P~~~~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~~~-------~~~g~~~~~~~l~~v~~~--~~y~C~~~~~~~~~~~ 76 (291)
T 1mq8_A 6 PSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKEL-------LLPGNNRKVYELSNVQED--SQPMCYSNCPDGQSTA 76 (291)
T ss_dssp CSEEEECTTCEEEEEEEECCSSCSEEEEECSSCCCCC-------CCSCSSEEEEEEESCCSC--CCCEEEEECSSCEEEE
T ss_pred CCccEEcCCCeEEEEEeCCCCCCccceEEecCCCccc-------ccCCCceEEEEEEecccC--CeEEEEEEcCCccEEE
Confidence 3456789999999999986433345888532110000 001112235788888753 4699999755333333
Q ss_pred EEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCC--eEEEEECCEEeccCceEEeCCeEEEEE
Q psy16852 192 RANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTP--EVKWFKNGKEIVSKDIETKDNVTKLVI 268 (579)
Q Consensus 192 ~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~--~v~W~~~~~~i~~~~~~~~~~~~~l~i 268 (579)
...+.+. ..+. .+.+ .+....+.+|+.++|.|.+.+. |.. +|.|+|+++.+.............|.+
T Consensus 77 ~v~l~V~--~~P~------~v~I--~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~~~~~~~~l~~ 146 (291)
T 1mq8_A 77 KTFLTVY--WTPE------RVEL--APLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTV 146 (291)
T ss_dssp ECEEEEC--BCCS------CCCB--CCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECCBTTEEEEEEC
T ss_pred EEEEEEe--cCCC------CCEE--ecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCCCCCceEEEEe
Confidence 3344443 2111 1111 1222347789999999999874 544 589999998876433111223456777
Q ss_pred cccCCCCCeEEEEEEEcCCee--------eEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCC---
Q psy16852 269 KQTTKKTTGKYEIRVVNEAGE--------ARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTP--- 337 (579)
Q Consensus 269 ~~~~~~d~G~y~C~a~n~~g~--------~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~--- 337 (579)
.....++.+.|+|+|.+..+. ......+.|...+.....+.. +..........+.|.+.|.|++
T Consensus 147 ~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~-----p~~l~eG~~v~l~C~~~g~~P~~~~ 221 (291)
T 1mq8_A 147 LVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS-----PRVLEVDTQGTVVCSLDGLFPVSEA 221 (291)
T ss_dssp CCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC------------------------------------------
T ss_pred eeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecC-----CcCccCCCeEEEEEEcCCCCCCccc
Confidence 777777788999999986542 122234444433322222211 1112233445556889997654
Q ss_pred eEEEEECCEEccCCCeEEEEECCCCeEEEEEccc---CCC--CCEEEEEEEEcCceeEEEEEEEEEEec
Q psy16852 338 LVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEV---FPE--NAGLYSCTAVNPVGEAVAAATLAVEEK 401 (579)
Q Consensus 338 ~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~--d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 401 (579)
.+.|.++|+.+..... .+++ .+.+... ..+ +.+.|+|.|.+..........|.|...
T Consensus 222 ~v~w~~~g~~l~~~~~----~~g~---~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~ 283 (291)
T 1mq8_A 222 QVHLALGDQRLNPTVT----YGND---SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF 283 (291)
T ss_dssp ---------------------------------------------------------------------
T ss_pred EEEEEECCEecCceee----ecCC---eEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcC
Confidence 6999999998875321 1111 2333322 233 356788998876555666777777664
No 313
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.74 E-value=4.7e-18 Score=147.73 Aligned_cols=147 Identities=14% Similarity=0.203 Sum_probs=95.7
Q ss_pred CCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEec-------------
Q psy16852 335 PTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEK------------- 401 (579)
Q Consensus 335 p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~------------- 401 (579)
|.+.+.|+|+|..+... ... ...|.|.++..+|+|.|+|.+.+..+ ..+.|.+...
T Consensus 28 p~~~i~W~k~g~~l~~~------~~~--~~~L~i~~v~~~DsG~Y~C~~~~~~s---~~~~v~v~~~~~~~~~~~~~~~~ 96 (204)
T 1sy6_A 28 EAKNITWFKDGKMIGFL------TED--KKKWNLGSNAKDPRGMYQCKGSQNKS---KPLQVYYRMGSADDAKKDAAKKD 96 (204)
T ss_dssp CSSEEEEEETTEEEEEE------ESS--CCCEEEEEGGGCCEEEEEEESSSSCC---CCEEEEEEC--------------
T ss_pred CCCEEEEEECCEECCCC------CCC--CCeEEeCCCCcCCCEEEEEEecCCCC---eeEEEEEEEeccccccccccccc
Confidence 56789999999887532 111 22799999999999999999755322 2234444300
Q ss_pred ------------ccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCC-eeEEEcCCCCeEEEE
Q psy16852 402 ------------EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNG-HTMEFNPTTGECVLS 468 (579)
Q Consensus 402 ------------~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~-~~~~~~~~~~~~~l~ 468 (579)
.....++.+...+ .....+|+.++|.|. |.|.|.+.|++++..+....+ ..+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~p-~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~---------- 163 (204)
T 1sy6_A 97 DAKKDDAKKDGSDGNEEMGGITQTP-YKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGS---------- 163 (204)
T ss_dssp ----------------------CCC-CEEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEE----------
T ss_pred cccccccccccccccccccceecCC-ceeeecCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEec----------
Confidence 0000022222222 122238999999999 789999999999998854321 11110
Q ss_pred EccccCCCceeEEEEeecceeeeeeeCCeeEEEEeec-ccccceeEEEEEEeCCee-EEEEEEEEE
Q psy16852 469 ISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKI-TRDQIGDVTCRAENVAGS-VTCTATLSL 532 (579)
Q Consensus 469 i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~Y~C~a~n~~g~-~~~~~~l~v 532 (579)
..+.|+|.++ +.+|+|.|+|.|.|..|. .+..+.|+|
T Consensus 164 ---------------------------~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~ 202 (204)
T 1sy6_A 164 ---------------------------DEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202 (204)
T ss_dssp ---------------------------ETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred ---------------------------CCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence 1345999999 999999999999999996 345555554
No 314
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=99.74 E-value=2.1e-17 Score=148.67 Aligned_cols=175 Identities=13% Similarity=0.217 Sum_probs=103.6
Q ss_pred cccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--EE---e---c-----------CCCCEEEEEe--CCEEEEEEc
Q psy16852 11 EKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--TE---L---H-----------ATEHYLITTV--ESVSTLEII 67 (579)
Q Consensus 11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~~---~---~-----------~~~~~~~~~~--~~~~~L~i~ 67 (579)
.+|..+.+.+|++++|.|.+.+.+ .+.+.|||.. .. + . ...++.+... .+...|+|.
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 84 (257)
T 3bn9_D 5 VQSGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMS 84 (257)
T ss_dssp EEECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEE
T ss_pred EccCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEEC
Confidence 457778999999999999998765 5689999853 11 1 0 1345555543 456899999
Q ss_pred CCCCCCCEEEEEEEEcCCe----------e---eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-c
Q psy16852 68 NPTKEDIGVYTCKATNIGG----------V---ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-P 133 (579)
Q Consensus 68 ~~~~~d~G~Y~C~~~~~~g----------~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p 133 (579)
+++.+|+|.|+|.+.+..| . ....+.|.|...+ ..+|.+........+.+|+.++|.|.+.+. |
T Consensus 85 ~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~--~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P 162 (257)
T 3bn9_D 85 SLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSAS--TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP 162 (257)
T ss_dssp SCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSC--CBCCEECCCCC-----------CCCEEEEEBS
T ss_pred CCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCC--CcCCcEEEecCcccccCCCcEEEEEEEeeEEC
Confidence 9999999999999998654 1 1123567775421 223444332222235679999999999886 7
Q ss_pred CC-eEEEEECCEEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeE
Q psy16852 134 TP-SICWYRGKEEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAE 190 (579)
Q Consensus 134 ~~-~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 190 (579)
.+ .|.|++++..+........ .. .++ .+.|.|..+..+| |.|+|.+.|......
T Consensus 163 ~pi~v~W~k~g~~~~~~~~~~~-~~-~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~ 221 (257)
T 3bn9_D 163 EPVTVSWNSGALTSGVHTFPAV-LQ-SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK 221 (257)
T ss_dssp SCCEEEETTTTCCSSCEECCCE-EC-TTSCEEEEEECCCC--------CEEEEEEEGGGTEE
T ss_pred CCcEEEEeeCCCcCCcEecCCe-Ec-CCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCcC
Confidence 66 9999998875321100001 11 112 2467888888778 999999999765443
No 315
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=99.74 E-value=2.4e-17 Score=145.13 Aligned_cols=175 Identities=18% Similarity=0.230 Sum_probs=112.6
Q ss_pred cccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--EEe---c-------------CCCCEEEEEe--CCEEEEEEcC
Q psy16852 11 EKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--TEL---H-------------ATEHYLITTV--ESVSTLEIIN 68 (579)
Q Consensus 11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~~~---~-------------~~~~~~~~~~--~~~~~L~i~~ 68 (579)
..|.++.+.+|++++|.|.+.+.+ .+.+.|||+. ... . ...++.+... .+..+|+|.+
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 84 (215)
T 1c5d_H 5 LESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNS 84 (215)
T ss_dssp EEECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESS
T ss_pred EcCCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECC
Confidence 357888999999999999998754 4689999853 211 0 1234544432 3467999999
Q ss_pred CCCCCCEEEEEEEEcCCee---eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cCC-eEEEEECC
Q psy16852 69 PTKEDIGVYTCKATNIGGV---ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP-SICWYRGK 143 (579)
Q Consensus 69 ~~~~d~G~Y~C~~~~~~g~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~ 143 (579)
++.+|+|.|+|.+.+..+. ....+.|.|.... +.+|.+........+.+|+.++|.|.+.+. |.+ .|.|++++
T Consensus 85 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g 162 (215)
T 1c5d_H 85 LQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQ--TTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGA 162 (215)
T ss_dssp CCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSC--CBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred CCcccCEEEEEEEecCCcccceEcCCEEEEecCCC--CCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCC
Confidence 9999999999999876421 2233567776321 223444332222234689999999999887 777 99999987
Q ss_pred EEccCCCCceEEEcCCCCeEEE--EECcCCCCCCeEEEEEEEcCCceeEE
Q psy16852 144 EEILPDNGHTMEFNPTTGECVL--SISEATPQDEAVYSVKAVNTFGRAEC 191 (579)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~l--~i~~~~~~d~G~Y~C~~~~~~~~~~~ 191 (579)
..+......... +. +...+ .+.....+| |.|+|.+.|..+....
T Consensus 163 ~~~~~~~~~~~~-~~--g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~ 208 (215)
T 1c5d_H 163 LSSDVHTFPAVL-QS--GLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKV 208 (215)
T ss_dssp TCCSCCBCCCEE-ET--TEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEE
T ss_pred ccCceEecCccc-CC--CCEEEEEEEecccCCC-CeEEEEEEeCCCCccE
Confidence 653211111111 11 22221 122444456 9999999998876543
No 316
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.74 E-value=1.1e-17 Score=148.72 Aligned_cols=178 Identities=15% Similarity=0.179 Sum_probs=117.9
Q ss_pred CceEEccCCcEEEEEEEEeecCC---eEEEEECCEEccC--------------CCCceEEE-------cCCCCeEEEEEC
Q psy16852 113 KPVIAEAQSPATLKATVTGRPTP---SICWYRGKEEILP--------------DNGHTMEF-------NPTTGECVLSIS 168 (579)
Q Consensus 113 ~~~~~~~g~~~~l~C~~~~~p~~---~i~W~~~~~~~~~--------------~~~~~~~~-------~~~~~~~~l~i~ 168 (579)
..+.+..|++++|.|.+.+.+.+ .|.|+|++..+.. ........ ....+.++|.|.
T Consensus 9 ~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~ 88 (225)
T 4fmk_A 9 PEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFR 88 (225)
T ss_dssp SEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEEC
T ss_pred CEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEc
Confidence 45678899999999999876665 4899997643210 00111111 112344679999
Q ss_pred cCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEE-ccCCCeEEEEE
Q psy16852 169 EATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYT-GTPTPEVKWFK 247 (579)
Q Consensus 169 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~ 247 (579)
+++.+|+|.|+|.+.+..+........... ..+|.....+.......+..+.+.|.+. +.|++.+.|++
T Consensus 89 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~ 158 (225)
T 4fmk_A 89 GLRVEDEGNYTCEFATFPNGTRRGVTWLRV----------IAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWIS 158 (225)
T ss_dssp SCCGGGCEEEEEEEEEETTEEEEEEEEEEE----------EBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEEC
T ss_pred cCCHHHCcceEEEEEeCCCcceeeeeeeee----------ecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEE
Confidence 999999999999998876655443322221 1334444344444566677777777655 57888999999
Q ss_pred CCEEeccCceEE------eCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEe
Q psy16852 248 NGKEIVSKDIET------KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300 (579)
Q Consensus 248 ~~~~i~~~~~~~------~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~ 300 (579)
++..+....... ....+.|.|.++..+|+|.|+|.|.|..+....+..+.|.|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V 217 (225)
T 4fmk_A 159 SLGGEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSV 217 (225)
T ss_dssp SSCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCB
T ss_pred CCccccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEE
Confidence 876544322111 11235799999999999999999999988776666665543
No 317
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.73 E-value=7.8e-17 Score=146.19 Aligned_cols=175 Identities=10% Similarity=0.129 Sum_probs=116.6
Q ss_pred CceEEccCCcEEEEEEEEeec--CCeEEEEECC--EE---c--------------cCCCCceEEEcCCCCeEEEEECcCC
Q psy16852 113 KPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EE---I--------------LPDNGHTMEFNPTTGECVLSISEAT 171 (579)
Q Consensus 113 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~---~--------------~~~~~~~~~~~~~~~~~~l~i~~~~ 171 (579)
..+.+.+|++++|.|.+.+.+ .+.+.||+.. .. + ....++.+..+...+..+|.|.+++
T Consensus 10 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 89 (256)
T 3umt_A 10 GLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLT 89 (256)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCC
Confidence 446688999999999998765 5899999842 11 1 0113344444444556789999999
Q ss_pred CCCCeEEEEEEEcC----CceeEEEEEEEEeecccc----CCCCcc-CCCeEeccCCceeeCCCCeEEEEEEEEccCCCe
Q psy16852 172 PQDEAVYSVKAVNT----FGRAECRANLVLRKATTI----DKPRVL-EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPE 242 (579)
Q Consensus 172 ~~d~G~Y~C~~~~~----~~~~~~~~~~~v~~~~~~----~~~~~~-~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~ 242 (579)
.+|+|.|+|.+.+. .+.......+.|...... ....+. .+|.+...+....+.+|+.++|.|.+.+.+.+.
T Consensus 90 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~ 169 (256)
T 3umt_A 90 SEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGSN 169 (256)
T ss_dssp GGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTTC
T ss_pred cccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCcE
Confidence 99999999999887 222222344444321000 000000 155666666777899999999999999988889
Q ss_pred EEEEEC--CEEec-------------cCc--eEEeCCeEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852 243 VKWFKN--GKEIV-------------SKD--IETKDNVTKLVIKQTTKKTTGKYEIRVVNEA 287 (579)
Q Consensus 243 v~W~~~--~~~i~-------------~~~--~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~ 287 (579)
+.|+++ +.... ... .........|.|.+++.+|+|.|+|.|.+..
T Consensus 170 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 231 (256)
T 3umt_A 170 LNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASS 231 (256)
T ss_dssp EEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSS
T ss_pred EEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCC
Confidence 999983 22111 011 1223455679999999999999999998754
No 318
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.73 E-value=1.6e-17 Score=147.47 Aligned_cols=133 Identities=16% Similarity=0.200 Sum_probs=94.0
Q ss_pred eEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEE-EeeCCCeEEE
Q psy16852 363 LCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICW 441 (579)
Q Consensus 363 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~v~W 441 (579)
...|.|.+++.+|+|.|+|.+.+. +.....+.|.|...+ ..|.+...+ ...+..|+.++|.|.+ .|.|.|.+.|
T Consensus 71 ~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~V~~~~---~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W 145 (222)
T 4i0k_A 71 NASLRLQRVRVTDEGSYTCFVSIQ-DFDSAAVSLQVAAPY---SKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFW 145 (222)
T ss_dssp BCCEEECSCCGGGCSCEEEEEEEC-CCCCCCCCCCCCBCC---CCCEEECCC------CCSEEEEEEEEEEEBSCCEEEE
T ss_pred eEEEEECCcccccCEEEEEEEEeC-CCceEEEEEEEEcCC---CCCcEEeCC-CceecCCceEEEEEecccccCCCeEEE
Confidence 447999999999999999999986 344455566665432 346665443 3467789999999999 7899999999
Q ss_pred eeC-CEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeC
Q psy16852 442 YRG-KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENV 520 (579)
Q Consensus 442 ~~~-~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 520 (579)
+++ +..+......... ...++..+.|.|.++..+|+|.|+|.|.|.
T Consensus 146 ~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~ 192 (222)
T 4i0k_A 146 KDGQGVPLTGNVTTSQM---------------------------------ANERGLFDVHSVLRVVLGANGTYSCLVRNP 192 (222)
T ss_dssp ECTTSCBCCSEEEEEEE---------------------------------ECTTSCEEEEEEEEEECCTTCEEEEEEEET
T ss_pred EcCCCccCCCCcceeEE---------------------------------cCCCCeEEEEEEEEEEeCCCCEEEEEEECC
Confidence 994 4433221111000 011233456889999999999999999999
Q ss_pred CeeEEEEEEEEEe
Q psy16852 521 AGSVTCTATLSLL 533 (579)
Q Consensus 521 ~g~~~~~~~l~v~ 533 (579)
.|....++.|.|.
T Consensus 193 ~g~~~~~~~l~V~ 205 (222)
T 4i0k_A 193 VLQQDAHGSVTIT 205 (222)
T ss_dssp TTTEEEEEEEECC
T ss_pred CCCCceEEEEEEe
Confidence 9999999999864
No 319
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=153.14 Aligned_cols=178 Identities=16% Similarity=0.217 Sum_probs=118.3
Q ss_pred CccccccCceeeeCCCCEEEEEEEEee--CCCeeEEEECC--EEe------c-----------CCCCEEEEE--eCCEEE
Q psy16852 7 PRFIEKIQPVVSHQEQPALFTCKVEGH--PLPTMTWQKDG--TEL------H-----------ATEHYLITT--VESVST 63 (579)
Q Consensus 7 p~~~~~p~~~~v~~G~~~~l~C~~~~~--~~~~v~W~~~g--~~~------~-----------~~~~~~~~~--~~~~~~ 63 (579)
+.+.. |.++.+.+|++|+|.|.+.+. +.+.+.|||.. ... . ...++.+.. .....+
T Consensus 2 ~~v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s 80 (280)
T 3fku_X 2 VQLVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAY 80 (280)
T ss_dssp CCEEC-CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEE
T ss_pred CeEEc-CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEE
Confidence 34555 888999999999999999765 45689999832 110 0 113454442 234678
Q ss_pred EEEcCCCCCCCEEEEEEEEcC---------CeeeEEEEEEEEEeccc---------CCCCCceecCCCceEEccCCcEEE
Q psy16852 64 LEIINPTKEDIGVYTCKATNI---------GGVATCSANLIVLEKEE---------SGEAPKFTKPLKPVIAEAQSPATL 125 (579)
Q Consensus 64 L~i~~~~~~d~G~Y~C~~~~~---------~g~~~~~~~~~v~~~~~---------~~~~~~~~~~~~~~~~~~g~~~~l 125 (579)
|.|.+++.+|+|.|+|.+.+. .........+.|...+. ...++.+...+. ..+.+|++++|
T Consensus 81 L~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L 159 (280)
T 3fku_X 81 MDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATL 159 (280)
T ss_dssp EEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEE
T ss_pred EEECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEE
Confidence 999999999999999999886 12222345566654100 011334444444 78899999999
Q ss_pred EEEEEe-ec-CCeEEEEECC--EEcc---C-------CCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852 126 KATVTG-RP-TPSICWYRGK--EEIL---P-------DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF 186 (579)
Q Consensus 126 ~C~~~~-~p-~~~i~W~~~~--~~~~---~-------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 186 (579)
.|.+.+ .+ .+.+.||+.. ..+. . ....++..........|.|.+++.+|+|.|+|.+.+..
T Consensus 160 ~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 234 (280)
T 3fku_X 160 TCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSS 234 (280)
T ss_dssp EEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred EEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence 999977 33 3799999832 1111 0 00112222223456789999999999999999998865
No 320
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.73 E-value=8.7e-18 Score=147.51 Aligned_cols=172 Identities=15% Similarity=0.194 Sum_probs=114.9
Q ss_pred CceEEccCCcEEEEEEEEeec--CCeEEEEECC--EEc---c-------------CCCCceEEEcCCCCeEEEEECcCCC
Q psy16852 113 KPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EEI---L-------------PDNGHTMEFNPTTGECVLSISEATP 172 (579)
Q Consensus 113 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~~---~-------------~~~~~~~~~~~~~~~~~l~i~~~~~ 172 (579)
..+.+.+|++++|.|.+.+.+ .+.+.||+++ ... . ...+..+..+...+..+|.|.+++.
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 87 (210)
T 3d9a_H 8 GPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTT 87 (210)
T ss_dssp SCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred CCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCc
Confidence 445788999999999998765 3899999852 111 0 1233344333334567999999999
Q ss_pred CCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCC-eEEEEECCE
Q psy16852 173 QDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTP-EVKWFKNGK 250 (579)
Q Consensus 173 ~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~ 250 (579)
+|+|.|+|.+.+.. .......+.+... ...+|.+...+....+..|+.++|.|.+.+. |.+ .+.|++++.
T Consensus 88 ~D~G~Y~C~~~~~~-~~~~~~~l~V~~~-------~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~ 159 (210)
T 3d9a_H 88 EDTATYYCANWDGD-YWGQGTLVTVSAA-------KTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL 159 (210)
T ss_dssp GGCEEEEEEETTSS-CBCCCEEEEECCC-------CCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred ccCEEEEEEEecCc-ccccceEEEeccC-------CCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCc
Confidence 99999999998853 1111234444311 1134554433323346789999999999986 888 999999887
Q ss_pred Eecc---CceE---EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEE
Q psy16852 251 EIVS---KDIE---TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTS 293 (579)
Q Consensus 251 ~i~~---~~~~---~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~ 293 (579)
.+.. .... .....+.|.|.....+| |.|+|.|.|..|.....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~ 207 (210)
T 3d9a_H 160 SSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD 207 (210)
T ss_dssp CTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred ccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcccc
Confidence 5321 1111 11124568999988877 99999999998875543
No 321
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}
Probab=99.73 E-value=4.6e-18 Score=151.20 Aligned_cols=181 Identities=15% Similarity=0.119 Sum_probs=116.8
Q ss_pred CCCccc-cccCceeeeCCCCEEEEEEEEee-CC-C-eeEEEECCEEe-cCCCCEEEEEeC----CEEEEEEcCCCCCCCE
Q psy16852 5 LAPRFI-EKIQPVVSHQEQPALFTCKVEGH-PL-P-TMTWQKDGTEL-HATEHYLITTVE----SVSTLEIINPTKEDIG 75 (579)
Q Consensus 5 ~~p~~~-~~p~~~~v~~G~~~~l~C~~~~~-~~-~-~v~W~~~g~~~-~~~~~~~~~~~~----~~~~L~i~~~~~~d~G 75 (579)
.+|.+. ..|....+.+|+.++|.|.+.+. |. + .++|+++|..+ ............ ....|.|.+++.+|+|
T Consensus 11 ~~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g 90 (231)
T 2w59_A 11 SPIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGE 90 (231)
T ss_dssp -CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTC
T ss_pred CCCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCC
Confidence 355544 56777888999999999999885 53 4 99999999877 332221111111 1357999999999999
Q ss_pred EEEEEEEcCCeeeEEEEEEEEEecccCCCCCceec-CCCceEEccCCcEEEEEEEEee-c-CCeEEEEECCEEccCCCCc
Q psy16852 76 VYTCKATNIGGVATCSANLIVLEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGR-P-TPSICWYRGKEEILPDNGH 152 (579)
Q Consensus 76 ~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~~ 152 (579)
.|+|.+.|..+... ..+.|........+|.+.. .+.... ..+..++|.|.+.++ | .+.|.|++++..+......
T Consensus 91 ~Y~C~~~~~~~~~~--~~~~v~~~~~~~~~P~v~v~~~~~~~-~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~ 167 (231)
T 2w59_A 91 RFTCTVQHEELPLP--LSKSVYRNTGPTTPPLIYPFAPHPEE-LSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFV 167 (231)
T ss_dssp CEEEEEECTTCSSC--EEEEECCCCSCCBCCEEEEECCCGGG-GGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCE
T ss_pred EEEEEEEcCCCCCc--eEEEEecCCCCCcCCEEEEeCCCHHH-hccCceEEEEEEEeccCCCcEEEEEECCEECCCcccc
Confidence 99999998775432 3333422110112333322 222112 235679999999886 4 3799999999987654311
Q ss_pred e--EEEcC-------CC-C----eEEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852 153 T--MEFNP-------TT-G----ECVLSISEATPQDEAVYSVKAVNTFGR 188 (579)
Q Consensus 153 ~--~~~~~-------~~-~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 188 (579)
. ..... .+ + .+.|.|.....+|.|.|+|.|.|....
T Consensus 168 ~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~ 217 (231)
T 2w59_A 168 TTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP 217 (231)
T ss_dssp ECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred cCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence 1 11110 11 2 256888888888899999999998654
No 322
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.73 E-value=6.7e-17 Score=145.20 Aligned_cols=188 Identities=14% Similarity=0.207 Sum_probs=111.1
Q ss_pred EEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECC--EEc------------cCCCeEEEEECCCCe
Q psy16852 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDG--TPM------------KEGKEVTIYQDTDGL 363 (579)
Q Consensus 298 v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~--~~~------------~~~~~~~~~~~~~~~ 363 (579)
+.+..|..+.|.|.+...+.. .+.+.+.|++++ ..+ ....++.... ..+.
T Consensus 11 ~~v~~G~~v~L~C~~~~~~~~---------------~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~ 74 (240)
T 1moe_A 11 LAVSLGQRATMSCRAGESVDI---------------FGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG-SRTD 74 (240)
T ss_dssp EEECTTSCEEEEEEESSCCEE---------------TTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTE
T ss_pred EEecCCCCEEEEEeCCCcccc---------------CCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEe-cCCe
Confidence 456778888888875443300 003456666631 110 0123444433 3456
Q ss_pred EEEEEcccCCCCCEEEEEEEEcCcee-EEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCC--CeEE
Q psy16852 364 CKLAISEVFPENAGLYSCTAVNPVGE-AVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT--PSIC 440 (579)
Q Consensus 364 ~~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~v~ 440 (579)
.+|.|.++..+|+|.|+|.|.|..+. ......|.|...+....++.+...+....+.+|+.++|.|.+.|.|. +.+.
T Consensus 75 ~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~ 154 (240)
T 1moe_A 75 FTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMH 154 (240)
T ss_dssp EEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEE
T ss_pred EEEEEcCCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEE
Confidence 68999999999999999999998653 33445677765432212333444556678999999999999999874 5999
Q ss_pred EeeCC--EEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee--eCCeeEEEEeecccccceeEEEE
Q psy16852 441 WYRGK--EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT--DGNRSVLLISKITRDQIGDVTCR 516 (579)
Q Consensus 441 W~~~~--~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~ 516 (579)
|+++. ..+ ...+.....++.. .. .....++| .+.. ....+.|+|.+++.+|+|.|+|.
T Consensus 155 W~k~~~g~~~----~~~~~~~~~~~~~--~~---~~~~~~r~---------~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 216 (240)
T 1moe_A 155 WVKQRPEQGL----EWIGRIDPANGNS--KY---VPKFQGKA---------TITADTSSNTAYLQLTSLTSEDTAVYYCA 216 (240)
T ss_dssp EEEECTTSCC----EEEEEEETTTTEE--EE---CGGGTTTE---------EEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEECCCCCc----EEEEEEcccCCcc--cc---CccccccE---------EEEEcccCCEEEEEECcCCHHHCEEEEEE
Confidence 99952 111 0000000001100 00 00011122 2222 24557799999999999999999
Q ss_pred EEe
Q psy16852 517 AEN 519 (579)
Q Consensus 517 a~n 519 (579)
|.+
T Consensus 217 a~~ 219 (240)
T 1moe_A 217 PFG 219 (240)
T ss_dssp ECS
T ss_pred EEe
Confidence 984
No 323
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.73 E-value=1.1e-16 Score=145.11 Aligned_cols=183 Identities=10% Similarity=0.127 Sum_probs=122.9
Q ss_pred CCceecCCCceEEccCCcEEEEEEEEee--cCCeEEEEECC--EE---c------------c--CCCCceEEEcCCCCeE
Q psy16852 105 APKFTKPLKPVIAEAQSPATLKATVTGR--PTPSICWYRGK--EE---I------------L--PDNGHTMEFNPTTGEC 163 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~--p~~~i~W~~~~--~~---~------------~--~~~~~~~~~~~~~~~~ 163 (579)
++.+...+..+.+.+|++++|.|.+.+. +.+.+.||+.. .. + . ...+..+..+...+..
T Consensus 6 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 85 (256)
T 3juy_B 6 HQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTA 85 (256)
T ss_dssp -CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEE
T ss_pred ceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEE
Confidence 4566667888999999999999999873 66899999742 10 0 0 1124444444556678
Q ss_pred EEEECcCCCCCCeEEEEEEEcC------------CceeEEEEEEEEeeccccCCC----CccCCCeEeccCCceeeCCCC
Q psy16852 164 VLSISEATPQDEAVYSVKAVNT------------FGRAECRANLVLRKATTIDKP----RVLEAPTIVRPLQALLVPKDS 227 (579)
Q Consensus 164 ~l~i~~~~~~d~G~Y~C~~~~~------------~~~~~~~~~~~v~~~~~~~~~----~~~~~p~~~~~~~~~~~~~g~ 227 (579)
+|.|.+++.+|+|.|+|.+.+. .+.......+.|........+ ....++.+...+....+.+|+
T Consensus 86 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~ 165 (256)
T 3juy_B 86 YMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGE 165 (256)
T ss_dssp EEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTS
T ss_pred EEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCC
Confidence 9999999999999999999886 222222334444321100000 000144566667777899999
Q ss_pred eEEEEEEEEccCC-CeEEEEEC--CEEec-------------cCc--eEEeCCeEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852 228 TVTLEAEYTGTPT-PEVKWFKN--GKEIV-------------SKD--IETKDNVTKLVIKQTTKKTTGKYEIRVVNEA 287 (579)
Q Consensus 228 ~~~l~C~~~~~p~-~~v~W~~~--~~~i~-------------~~~--~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~ 287 (579)
+++|.|.+.+.+. +.+.|++. +.... ... .........|.|.+++.+|+|.|.|.|.|..
T Consensus 166 ~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 243 (256)
T 3juy_B 166 RATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGAS 243 (256)
T ss_dssp CEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSS
T ss_pred CEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCC
Confidence 9999999998776 79999982 22111 011 1223456689999999999999999998754
No 324
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.73 E-value=6.4e-17 Score=146.48 Aligned_cols=178 Identities=13% Similarity=0.105 Sum_probs=118.8
Q ss_pred cCCCceEEccCCcEEEEEEEEeec--CCeEEEEEC--CEE---c--------------cCCCCceEEEcCCCCeEEEEEC
Q psy16852 110 KPLKPVIAEAQSPATLKATVTGRP--TPSICWYRG--KEE---I--------------LPDNGHTMEFNPTTGECVLSIS 168 (579)
Q Consensus 110 ~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~--~~~---~--------------~~~~~~~~~~~~~~~~~~l~i~ 168 (579)
..+.++.+.+|+.++|.|.+.+.+ .+.+.||+. +.. + ....+..+..+...+..+|.|.
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 85 (253)
T 3uzq_A 6 EQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLS 85 (253)
T ss_dssp EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred ecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeC
Confidence 345667889999999999998744 689999982 111 1 0123445555555667889999
Q ss_pred cCCCCCCeEEEEEEEcCCceeE-EEEEEEEeecccc----CCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCC--
Q psy16852 169 EATPQDEAVYSVKAVNTFGRAE-CRANLVLRKATTI----DKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP-- 241 (579)
Q Consensus 169 ~~~~~d~G~Y~C~~~~~~~~~~-~~~~~~v~~~~~~----~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-- 241 (579)
+++.+|+|.|+|.+.+..+... ....+.+...... ....+..+|.+...+....+.+|++++|.|.+.+.+.+
T Consensus 86 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~ 165 (253)
T 3uzq_A 86 SLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDRYG 165 (253)
T ss_dssp SCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEETT
T ss_pred CCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccccCC
Confidence 9999999999999998654432 2334444311000 00011234566666677789999999999999987776
Q ss_pred --eEEEEEC--CEEec----c---------Cc--eEEeCCeEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852 242 --EVKWFKN--GKEIV----S---------KD--IETKDNVTKLVIKQTTKKTTGKYEIRVVNEA 287 (579)
Q Consensus 242 --~v~W~~~--~~~i~----~---------~~--~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~ 287 (579)
.+.|+++ +.... . .. .........|.|.+++.+|+|.|.|.|.|..
T Consensus 166 ~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~ 230 (253)
T 3uzq_A 166 NSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEV 230 (253)
T ss_dssp EECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred CcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence 8999984 22111 0 11 1223445689999999999999999998854
No 325
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=99.73 E-value=8e-17 Score=145.57 Aligned_cols=183 Identities=14% Similarity=0.185 Sum_probs=116.9
Q ss_pred cccCceeeeCCCCEEEEEEEEee--CCCeeEEEECC--E---Ee--------------cCCCCEEEEEe--CCEEEEEEc
Q psy16852 11 EKIQPVVSHQEQPALFTCKVEGH--PLPTMTWQKDG--T---EL--------------HATEHYLITTV--ESVSTLEII 67 (579)
Q Consensus 11 ~~p~~~~v~~G~~~~l~C~~~~~--~~~~v~W~~~g--~---~~--------------~~~~~~~~~~~--~~~~~L~i~ 67 (579)
..|..+.+.+|++++|.|.+.+. +...+.|||.. . .+ ....++.+... .+..+|+|.
T Consensus 5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 84 (253)
T 3liz_H 5 VESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMS 84 (253)
T ss_dssp EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEEC
T ss_pred EcCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEEC
Confidence 45778999999999999999763 34579999832 1 11 01234544433 356789999
Q ss_pred CCCCCCCEEEEEEEEcCC----eeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEe-ecCC-eEEEEE
Q psy16852 68 NPTKEDIGVYTCKATNIG----GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTP-SICWYR 141 (579)
Q Consensus 68 ~~~~~d~G~Y~C~~~~~~----g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~ 141 (579)
+++.+|+|.|+|.+.+.. ......+.+.|... ...+|.+........+..|+.++|.|.+.+ +|.+ .+.|++
T Consensus 85 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~--~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~ 162 (253)
T 3liz_H 85 SLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAA--KTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS 162 (253)
T ss_dssp SCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSS--CCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGG
T ss_pred CCChhhCEEEEEEEecCCcceeeEECCCEEEEEecc--CCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEe
Confidence 999999999999998752 22233456666521 123444443333334557999999999987 5655 999999
Q ss_pred CCEEccCCCCceEEEc-CCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEE
Q psy16852 142 GKEEILPDNGHTMEFN-PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196 (579)
Q Consensus 142 ~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~ 196 (579)
++..+........... .....+.|.|.....+| |.|+|.+.|..+.......+.
T Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~ 217 (253)
T 3liz_H 163 GSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV 217 (253)
T ss_dssp GTBCTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECC
T ss_pred CCeecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEec
Confidence 8863311000001110 00012579999999999 999999999987665554443
No 326
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Probab=99.72 E-value=1.2e-17 Score=148.85 Aligned_cols=180 Identities=16% Similarity=0.150 Sum_probs=111.4
Q ss_pred CCccccccCcee--eeCCCCEEEEEEEEee---CCC-eeEEEECCEEecCCCC-EEEEEe----CCEEEEEEcCCCCCCC
Q psy16852 6 APRFIEKIQPVV--SHQEQPALFTCKVEGH---PLP-TMTWQKDGTELHATEH-YLITTV----ESVSTLEIINPTKEDI 74 (579)
Q Consensus 6 ~p~~~~~p~~~~--v~~G~~~~l~C~~~~~---~~~-~v~W~~~g~~~~~~~~-~~~~~~----~~~~~L~i~~~~~~d~ 74 (579)
+|.+...|.... +.+|+.++|.|.+.+. |.+ .|.|||++..+..... ...... .....|.|.+++.+|+
T Consensus 15 ~P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~ 94 (239)
T 1i1c_A 15 VSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNG 94 (239)
T ss_dssp --CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTT
T ss_pred CCEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCC
Confidence 455545455544 8899999999999887 665 8999999876642210 000000 1236799999999999
Q ss_pred EEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC-CeEEEEECCEEccCCCCc
Q psy16852 75 GVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT-PSICWYRGKEEILPDNGH 152 (579)
Q Consensus 75 G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~ 152 (579)
|.|+|.+.+..+.......+.. ......+|.+...+.......|+.++|.|.+.|+ |+ ..|.|++++..+......
T Consensus 95 g~Y~C~~~~~~~~~~~~~~v~~--~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~ 172 (239)
T 1i1c_A 95 KTFKCKVNSGAFPAPIEKSISK--PEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNT 172 (239)
T ss_dssp CCEEEEEECSSSSSCEEEEECC--CSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEEC
T ss_pred CeEEEEEecccCCCCcEEEEec--CCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceec
Confidence 9999999998775322222211 1111234444332222222358899999999885 44 489999999987532111
Q ss_pred eEEEcCCCCe----EEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852 153 TMEFNPTTGE----CVLSISEATPQDEAVYSVKAVNTFGR 188 (579)
Q Consensus 153 ~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~ 188 (579)
..... .++. ..|.|.....+|.|.|+|.|.|....
T Consensus 173 ~~~~~-~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~ 211 (239)
T 1i1c_A 173 PPTMD-TDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE 211 (239)
T ss_dssp CCEEC-TTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred CceEC-CCCCEEEEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence 11111 1222 23555555556799999999998644
No 327
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.72 E-value=6.5e-17 Score=143.07 Aligned_cols=175 Identities=14% Similarity=0.178 Sum_probs=117.5
Q ss_pred CCceEEccCCcEEEEEEEEeec--CCeEEEEECC--EE---cc---C-------------CCCceEEEcCCCCeEEEEEC
Q psy16852 112 LKPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EE---IL---P-------------DNGHTMEFNPTTGECVLSIS 168 (579)
Q Consensus 112 ~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~---~~---~-------------~~~~~~~~~~~~~~~~l~i~ 168 (579)
+..+.+.+|++++|.|.+.+.+ .+.+.||+++ .. +. . ..+..+..+...+..+|.|.
T Consensus 7 p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 86 (220)
T 1pz5_B 7 SGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMN 86 (220)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred cCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEc
Confidence 3456788999999999998765 6899999853 11 10 0 12333433334456799999
Q ss_pred cCCCCCCeEEEEEEEcCCcee-E--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCC-eE
Q psy16852 169 EATPQDEAVYSVKAVNTFGRA-E--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTP-EV 243 (579)
Q Consensus 169 ~~~~~d~G~Y~C~~~~~~~~~-~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v 243 (579)
+++.+|+|.|+|.+.+..+.. . ....+.|... ...+|.+...+....+.+|+.++|.|.+.+. |.+ .+
T Consensus 87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~-------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v 159 (220)
T 1pz5_B 87 NLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSA-------TTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTV 159 (220)
T ss_dssp SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSS-------CCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEE
T ss_pred cCCHHHCEEEEEEEecCCcccceECCCEEEEEccC-------CCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEE
Confidence 999999999999999875322 1 2234444321 1134554433333346789999999999986 888 99
Q ss_pred EEEECCEEe---ccCce---EEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEE
Q psy16852 244 KWFKNGKEI---VSKDI---ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSG 294 (579)
Q Consensus 244 ~W~~~~~~i---~~~~~---~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~ 294 (579)
.|++++... ..... ......+.|.|.+...++ |.|+|.|.|..|....++
T Consensus 160 ~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~ 215 (220)
T 1pz5_B 160 KWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIK 215 (220)
T ss_dssp EEGGGTCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred EEecCCcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeee
Confidence 999988631 11111 111234678999988866 999999999998655443
No 328
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.72 E-value=2.2e-16 Score=139.66 Aligned_cols=174 Identities=14% Similarity=0.195 Sum_probs=115.7
Q ss_pred CceEEccCCcEEEEEEEEeec--CCeEEEEECC--E---Ecc--------------CCCCceEEEcCCCCeEEEEECcCC
Q psy16852 113 KPVIAEAQSPATLKATVTGRP--TPSICWYRGK--E---EIL--------------PDNGHTMEFNPTTGECVLSISEAT 171 (579)
Q Consensus 113 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~---~~~--------------~~~~~~~~~~~~~~~~~l~i~~~~ 171 (579)
.++.+.+|++++|.|.+.+.+ .+.+.||+.. . .+. ...++.+..+...+..+|.|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 87 (223)
T 1dee_B 8 GGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLR 87 (223)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred CCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCC
Confidence 456788999999999998765 4789999853 1 110 112334444444567899999999
Q ss_pred CCCCeEEEEEEEcCCc---ee-E--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCC-eE
Q psy16852 172 PQDEAVYSVKAVNTFG---RA-E--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTP-EV 243 (579)
Q Consensus 172 ~~d~G~Y~C~~~~~~~---~~-~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v 243 (579)
.+|+|.|+|.+.+..+ .. . ....+.|... ...+|.+........+..|+.++|.|.+.+. |.+ .+
T Consensus 88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~-------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v 160 (223)
T 1dee_B 88 AEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSG-------SASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITF 160 (223)
T ss_dssp GGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSS-------CCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEE
T ss_pred HHHCEEEEEEEeccccCcccceeecCcEEEEEccC-------CCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEE
Confidence 9999999999998653 11 1 1234444310 1134444422112235689999999999986 777 99
Q ss_pred EEEE-CCEEeccCc----e---EEeCCeEEEEEcccCC--CCCeEEEEEEEcCCeeeEEE
Q psy16852 244 KWFK-NGKEIVSKD----I---ETKDNVTKLVIKQTTK--KTTGKYEIRVVNEAGEARTS 293 (579)
Q Consensus 244 ~W~~-~~~~i~~~~----~---~~~~~~~~l~i~~~~~--~d~G~y~C~a~n~~g~~~~~ 293 (579)
.|++ +|..+.... . ......+.|.|..... +|.|.|+|.|.|..+.....
T Consensus 161 ~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~ 220 (223)
T 1dee_B 161 SWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKD 220 (223)
T ss_dssp EEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEE
T ss_pred EeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCccc
Confidence 9999 888775410 0 0111235688877776 78999999999998876544
No 329
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.72 E-value=9.4e-17 Score=147.71 Aligned_cols=176 Identities=13% Similarity=0.165 Sum_probs=117.9
Q ss_pred CCCceEEccCCcEEEEEEEEeec--CCeEEEEECC--EE---cc--------------CCCCceEEEcCCCCeEEEEECc
Q psy16852 111 PLKPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EE---IL--------------PDNGHTMEFNPTTGECVLSISE 169 (579)
Q Consensus 111 ~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~---~~--------------~~~~~~~~~~~~~~~~~l~i~~ 169 (579)
.+..+.+.+|++++|.|.+.+.+ .+.+.||+++ .. +. ...+..+..+...+..+|.|.+
T Consensus 32 ~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 111 (282)
T 1qok_A 32 QSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSS 111 (282)
T ss_dssp ECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECS
T ss_pred CCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECc
Confidence 34567888999999999998765 5899999953 11 10 1133444444345668999999
Q ss_pred CCCCCCeEEEEEEEcCCc---eeE--EEEEEEEeeccccC----CCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCC
Q psy16852 170 ATPQDEAVYSVKAVNTFG---RAE--CRANLVLRKATTID----KPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPT 240 (579)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~---~~~--~~~~~~v~~~~~~~----~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~ 240 (579)
++.+|+|.|+|.+.+..| ... ....+.|....... ......++.+...+....+.+|++++|.|.+.+.+
T Consensus 112 v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~- 190 (282)
T 1qok_A 112 LTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSV- 190 (282)
T ss_dssp CCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSCC-
T ss_pred CChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCC-
Confidence 999999999999999865 111 12244443211000 00001234455556667789999999999999888
Q ss_pred CeEEEEE--CCEEec-------------cCce--EEeCCeEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852 241 PEVKWFK--NGKEIV-------------SKDI--ETKDNVTKLVIKQTTKKTTGKYEIRVVNEA 287 (579)
Q Consensus 241 ~~v~W~~--~~~~i~-------------~~~~--~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~ 287 (579)
+.+.|+| ++..+. .... ........|.|.+++.+|+|.|+|.|.+..
T Consensus 191 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~ 254 (282)
T 1qok_A 191 SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSY 254 (282)
T ss_dssp SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCC
Confidence 8999999 554331 1111 123456789999999999999999998743
No 330
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.72 E-value=4.1e-17 Score=137.15 Aligned_cols=153 Identities=17% Similarity=0.151 Sum_probs=102.6
Q ss_pred EEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEcc------------CCCeEEEEECCCCeE
Q psy16852 297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMK------------EGKEVTIYQDTDGLC 364 (579)
Q Consensus 297 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~------------~~~~~~~~~~~~~~~ 364 (579)
.+.+..|+.++|.|... .+ .+.|.|++++..+. ...++.. ...+ .
T Consensus 4 ~v~~~~G~~VtL~c~~~-~~-------------------~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~-~~~~--~ 60 (171)
T 1ccz_A 4 QIYGVVYGNVTFHVPSN-VP-------------------LKEVLWKKQKDKVAELENSEFRAFSSFKNRVYL-DTVS--G 60 (171)
T ss_dssp EEEEETTCCEEECCCCS-SC-------------------CSCEEEEETTEEEEEEETTEEEECGGGTTSEEE-CTTT--C
T ss_pred EEEEEcCCCEEEcCCCC-CC-------------------cceEEEEeCCcEEEEEcCCCcccccccCCcEEE-eCCC--C
Confidence 35677888999998752 23 34555555554321 1112222 1122 3
Q ss_pred EEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeC
Q psy16852 365 KLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRG 444 (579)
Q Consensus 365 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~ 444 (579)
+|.|.+++.+|+|.|+|.+.|..| ...+.|.|...+ ..|.+..... ..+|.|.+.+.|.|++.|+++
T Consensus 61 sL~I~~v~~~DsG~Y~C~~~n~~~--~~~~~L~V~~~~---~~p~i~~~~~--------~~~L~C~~~~~p~p~i~W~~~ 127 (171)
T 1ccz_A 61 SLTIYNLTSSDEDEYEMESPNITD--TMKFFLYVLEMV---SKPMIYWECS--------NATLTCEVLEGTDVELKLYQG 127 (171)
T ss_dssp CEEECSCCGGGCEEEEEECTTCCS--CEEEEEEEECCC---CCCEEEEETT--------TTEEEEECSSCSSCEEEEEET
T ss_pred eEEECCCChhhCceEEEEEeCCCC--cEEEEEEEECcC---CCCEEEEecC--------CcEEEEEeCCCCCcEEEEEEC
Confidence 799999999999999999998877 566777776532 2344442211 238999999999999999999
Q ss_pred CEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeE
Q psy16852 445 KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV 524 (579)
Q Consensus 445 ~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 524 (579)
|..+....+ ..|.+. ..+|+|.|+|.|.|..|..
T Consensus 128 ~~~l~~~~~--------------------------------------------~~l~~~--~~~~~g~Y~C~a~N~~~~~ 161 (171)
T 1ccz_A 128 KEHLRSLRQ--------------------------------------------KTMSYQ--WTNLRAPFKCKAVNRVSQE 161 (171)
T ss_dssp TEEEEEESS--------------------------------------------SEEEEE--CSCCSSCEEEEEEETTEEE
T ss_pred CEECcCCcc--------------------------------------------eEEEEe--ccCCCceEEEEEEcccCcc
Confidence 988742211 113332 3678999999999999998
Q ss_pred EEEEEEE
Q psy16852 525 TCTATLS 531 (579)
Q Consensus 525 ~~~~~l~ 531 (579)
..++.|.
T Consensus 162 ~~~~~l~ 168 (171)
T 1ccz_A 162 SEMEVVN 168 (171)
T ss_dssp EEEECCC
T ss_pred cceeEEe
Confidence 8776654
No 331
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Probab=99.72 E-value=2.1e-17 Score=144.54 Aligned_cols=178 Identities=16% Similarity=0.185 Sum_probs=103.8
Q ss_pred CccccccCceee--eCCCCEEEEEEEEeeCC----CeeEEEECCEEecCCCCE-EEEEeCC----EEEEEEcCCCCCCCE
Q psy16852 7 PRFIEKIQPVVS--HQEQPALFTCKVEGHPL----PTMTWQKDGTELHATEHY-LITTVES----VSTLEIINPTKEDIG 75 (579)
Q Consensus 7 p~~~~~p~~~~v--~~G~~~~l~C~~~~~~~----~~v~W~~~g~~~~~~~~~-~~~~~~~----~~~L~i~~~~~~d~G 75 (579)
|.+...|....+ .+|+.++|.|.+.|.++ ..|.|||+|..+...... ......+ ...|.|.....+|+|
T Consensus 2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g 81 (207)
T 1l6x_A 2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGK 81 (207)
T ss_dssp CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTC
T ss_pred CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCc
Confidence 445555544434 79999999999998753 499999999877533100 0011111 123343333344599
Q ss_pred EEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC-CeEEEEECCEEccCCCCce
Q psy16852 76 VYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT-PSICWYRGKEEILPDNGHT 153 (579)
Q Consensus 76 ~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~ 153 (579)
.|+|.|.|..+.......+.+ ......+|.+...........|..++|.|.+.|+ |+ +.|+|++++..+.......
T Consensus 82 ~Y~C~a~n~~~~~~~~~~v~~--~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~ 159 (207)
T 1l6x_A 82 EYKCKVSNKALPAPIEKTISK--AKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTP 159 (207)
T ss_dssp CEEEEEECTTSSSCEEEEECC--CCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECC
T ss_pred eEEEEEEcCcCCcceEEEecc--CCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccC
Confidence 999999998775422222321 0011223443322221112346679999999885 44 4999999998875321111
Q ss_pred EEEcCCCCe----EEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852 154 MEFNPTTGE----CVLSISEATPQDEAVYSVKAVNTFG 187 (579)
Q Consensus 154 ~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~ 187 (579)
.... .++. ..|.+.....+|.|.|+|.|.|...
T Consensus 160 ~~~~-~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l 196 (207)
T 1l6x_A 160 PVLD-SDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL 196 (207)
T ss_dssp CEEC-TTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred ceEC-CCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCc
Confidence 1111 1221 3455666556689999999999764
No 332
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.72 E-value=2.7e-16 Score=142.80 Aligned_cols=177 Identities=11% Similarity=0.149 Sum_probs=116.4
Q ss_pred CCCceEEccCCcEEEEEEEEee--cCCeEEEEECC--E--E-c-------------cCCCCceEEEcCCCCeEEEEECcC
Q psy16852 111 PLKPVIAEAQSPATLKATVTGR--PTPSICWYRGK--E--E-I-------------LPDNGHTMEFNPTTGECVLSISEA 170 (579)
Q Consensus 111 ~~~~~~~~~g~~~~l~C~~~~~--p~~~i~W~~~~--~--~-~-------------~~~~~~~~~~~~~~~~~~l~i~~~ 170 (579)
.+.++.+.+|+.++|.|.+.+. +.+.+.||+.. . . + ....+..+..+...+..+|.|.++
T Consensus 14 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 93 (257)
T 3gkz_A 14 ESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSV 93 (257)
T ss_dssp EECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred CCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCC
Confidence 3445668899999999999874 46899999832 1 1 1 011234444433455678999999
Q ss_pred CCCCCeEEEEEEEcCC----ceeEEEEEEEEeeccc---cCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCC-e
Q psy16852 171 TPQDEAVYSVKAVNTF----GRAECRANLVLRKATT---IDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP-E 242 (579)
Q Consensus 171 ~~~d~G~Y~C~~~~~~----~~~~~~~~~~v~~~~~---~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~ 242 (579)
+.+|+|.|+|.+.+.. ........+.|..... .....+..++.+...+....+.+|++++|.|.+.+.+.+ .
T Consensus 94 ~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~ 173 (257)
T 3gkz_A 94 SSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSSSH 173 (257)
T ss_dssp CGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCGGG
T ss_pred ChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccceE
Confidence 9999999999999862 1111223444432100 000011234556666667789999999999999988777 9
Q ss_pred EEEEEC--CEEec----c---------Cc--eEEeCCeEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852 243 VKWFKN--GKEIV----S---------KD--IETKDNVTKLVIKQTTKKTTGKYEIRVVNEA 287 (579)
Q Consensus 243 v~W~~~--~~~i~----~---------~~--~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~ 287 (579)
+.|+++ +.... . .. .........|.|.+++.+|+|.|+|.|.+..
T Consensus 174 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 235 (257)
T 3gkz_A 174 LYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSF 235 (257)
T ss_dssp EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred EEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCC
Confidence 999983 22111 0 11 1223355679999999999999999998643
No 333
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.72 E-value=1e-16 Score=144.97 Aligned_cols=179 Identities=13% Similarity=0.139 Sum_probs=114.4
Q ss_pred ceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCE-----Ecc-------CCCCceEEEcCCCCeEEEEECcCCCCC
Q psy16852 107 KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE-----EIL-------PDNGHTMEFNPTTGECVLSISEATPQD 174 (579)
Q Consensus 107 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~-----~~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d 174 (579)
.+...+..+.+.+|+.++|.|.+.+.|.+.+.|++... .+. .....++......+..+|.|.+++.+|
T Consensus 6 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 85 (250)
T 3esu_F 6 VLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQED 85 (250)
T ss_dssp CEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred eEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhh
Confidence 44555667888999999999999988999999998531 110 011122233334556789999999999
Q ss_pred CeEEEEEEEcCCceeE-EEEEEEEeecccc--------CCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccC--CCeE
Q psy16852 175 EAVYSVKAVNTFGRAE-CRANLVLRKATTI--------DKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTP--TPEV 243 (579)
Q Consensus 175 ~G~Y~C~~~~~~~~~~-~~~~~~v~~~~~~--------~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~v 243 (579)
+|.|+|.+.+..+... ....+.+...... .......++.....+....+.+|+.++|.|.+.+.+ .+.+
T Consensus 86 ~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v 165 (250)
T 3esu_F 86 IGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWM 165 (250)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEE
T ss_pred CEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEE
Confidence 9999999988755322 1223444321000 000000122233334556688999999999998866 6799
Q ss_pred EEEEC--CEEecc------------------CceEE----eCCeEEEEEcccCCCCCeEEEEEEEc
Q psy16852 244 KWFKN--GKEIVS------------------KDIET----KDNVTKLVIKQTTKKTTGKYEIRVVN 285 (579)
Q Consensus 244 ~W~~~--~~~i~~------------------~~~~~----~~~~~~l~i~~~~~~d~G~y~C~a~n 285 (579)
.|+++ +..+.. ..... ......|.|.+++.+|+|.|.|.|.+
T Consensus 166 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 166 NWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp EEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred EEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence 99997 332210 01111 13445799999999999999999987
No 334
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=99.72 E-value=1.4e-16 Score=145.62 Aligned_cols=198 Identities=13% Similarity=0.172 Sum_probs=127.6
Q ss_pred EEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCC----CeEEEEECCCCeEEEEEcccC
Q psy16852 297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEG----KEVTIYQDTDGLCKLAISEVF 372 (579)
Q Consensus 297 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~ 372 (579)
.+.+..|+.+.|.|.+. .+...+.|+... .+.....+.+..++...... .++.+..+..+...|.|.+++
T Consensus 35 ~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~ 108 (268)
T 3pl6_D 35 NKVTEKGKYVELRCDPI-SGHTALYWYRQS-----LGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTE 108 (268)
T ss_dssp EEEEETTCCEEEEEBCB-TTCCEEEEEEEC-----TTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCC
T ss_pred EEEecCCCCEEEEEEeC-CCCceEEEEEEC-----CCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCC
Confidence 35577899999999865 344556665311 12222233333344333222 456655545566799999999
Q ss_pred CCCCEEEEEEEEcC--ceeEEEEEEEEEEecccCCCCCeee-cCCCceeeecCCCeEEEEEEEeeCCC--eEEEeeCCEE
Q psy16852 373 PENAGLYSCTAVNP--VGEAVAAATLAVEEKEESGEAPKFT-KPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEE 447 (579)
Q Consensus 373 ~~d~G~Y~C~a~n~--~g~~~~~~~l~v~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~ 447 (579)
.+|+|.|+|.+.+. .+.......|.|........+|.+. ..+....+..|+.++|.|.+.|.|++ .+.|+++|..
T Consensus 109 ~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~ 188 (268)
T 3pl6_D 109 RGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE 188 (268)
T ss_dssp GGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSE
T ss_pred cccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEE
Confidence 99999999999983 3444455677777533333456544 33444556679999999999986665 8999999988
Q ss_pred cCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeeccccc-ceeEEEEEEeCCeeE
Q psy16852 448 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQ-IGDVTCRAENVAGSV 524 (579)
Q Consensus 448 l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~ 524 (579)
+..+.+... .........+.|.|.+.. .|.|.....+| +|.|+|.|.|.....
T Consensus 189 l~~~~~~~~----------~~~~~~~~~~~~~~~~~s--------------~l~i~~~~~~d~~g~YtC~v~~~~l~~ 242 (268)
T 3pl6_D 189 VHSGVCTDP----------QPLKEQPALNDSRYSLSS--------------RLRVSATFWQNPRNHFRCQVQFYGLSE 242 (268)
T ss_dssp ECTTEEECS----------SCEESSTTCTTCCEEEEE--------------EEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred CCCCeEecc----------ccccccccCCCCcEEEEE--------------EEEEcHHHhccCCCEEEEEEEcCCCCC
Confidence 854321100 011223344556665543 38999998888 999999999986543
No 335
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.71 E-value=1.8e-17 Score=146.05 Aligned_cols=165 Identities=15% Similarity=0.140 Sum_probs=108.3
Q ss_pred EccCCcEEEEEEEEee---cC-CeEEEEECCEEccCCCCceEEEcCCC----CeEEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852 117 AEAQSPATLKATVTGR---PT-PSICWYRGKEEILPDNGHTMEFNPTT----GECVLSISEATPQDEAVYSVKAVNTFGR 188 (579)
Q Consensus 117 ~~~g~~~~l~C~~~~~---p~-~~i~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 188 (579)
+.+|+.++|.|.+.+. |. +.|.|++++..+...... ......+ ..+.|.|.+++.+|+|.|+|.+.|..+.
T Consensus 23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~-~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~ 101 (218)
T 2rgs_A 23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQ-THREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLP 101 (218)
T ss_dssp HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEE-EEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCS
T ss_pred hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccc-cccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCC
Confidence 6789999999999887 34 799999999876533211 1111111 2357999999999999999999998664
Q ss_pred eEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCC-eEEEEECCEEeccCce---EEeCC-
Q psy16852 189 AECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTP-EVKWFKNGKEIVSKDI---ETKDN- 262 (579)
Q Consensus 189 ~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~i~~~~~---~~~~~- 262 (579)
......+... ..+..+|.+...+.......|+.+.|.|.+.| +|.+ .+.|+++|..+..... .....
T Consensus 102 ~~~~~~v~~~-------~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g 174 (218)
T 2rgs_A 102 SPIERTISKI-------KGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTAPVLDSDG 174 (218)
T ss_dssp SCEEEEECCC-------CCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTS
T ss_pred CcceEEEeec-------CCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceecccEECCCC
Confidence 3122222110 01234565544333222345999999999998 6766 9999999998753211 01111
Q ss_pred ----eEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852 263 ----VTKLVIKQTTKKTTGKYEIRVVNEAGE 289 (579)
Q Consensus 263 ----~~~l~i~~~~~~d~G~y~C~a~n~~g~ 289 (579)
.+.|.|.....+|.|.|+|.|.|....
T Consensus 175 t~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~ 205 (218)
T 2rgs_A 175 SYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK 205 (218)
T ss_dssp CEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred CEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence 134555555556799999999997654
No 336
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.71 E-value=7.4e-18 Score=150.88 Aligned_cols=173 Identities=14% Similarity=0.139 Sum_probs=113.4
Q ss_pred CCceEEccCCcEEEEEEEEeecC-C-eEEEEECCE--Ec---c-------CCCCceEEEcCCCCeEEEEECcCCCCCCeE
Q psy16852 112 LKPVIAEAQSPATLKATVTGRPT-P-SICWYRGKE--EI---L-------PDNGHTMEFNPTTGECVLSISEATPQDEAV 177 (579)
Q Consensus 112 ~~~~~~~~g~~~~l~C~~~~~p~-~-~i~W~~~~~--~~---~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 177 (579)
+..+.+.+|+.++|.|.+.+.+. + .+.||+++. .+ . .....++......+..+|.|.+++.+|+|.
T Consensus 26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 105 (234)
T 2j6e_L 26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD 105 (234)
T ss_dssp CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence 56677889999999999987543 4 799998631 11 0 011112222223456789999999999999
Q ss_pred EEEEEEcCCcee-E--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CC-CeEEEEECCEEe
Q psy16852 178 YSVKAVNTFGRA-E--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PT-PEVKWFKNGKEI 252 (579)
Q Consensus 178 Y~C~~~~~~~~~-~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~i 252 (579)
|+|.+.+..+.. . ....+.|.. ....+|.+...+.......|+.++|.|.+.+. |+ +.+.|+++|+.+
T Consensus 106 Y~C~~~~~~~~~~~~~~~~~l~V~~-------~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l 178 (234)
T 2j6e_L 106 YYCATWDDSLSAVIFGGGTKLTVLG-------QPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPV 178 (234)
T ss_dssp EEEEEEETTTTEEEECCCBCCCBCC-------CCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEEC
T ss_pred EEEEEEcCCcceeEecCCEEEEEec-------CCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEEC
Confidence 999999887621 1 112222210 00123443332222223468899999999885 44 389999999988
Q ss_pred ccCceE---------EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeE
Q psy16852 253 VSKDIE---------TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEAR 291 (579)
Q Consensus 253 ~~~~~~---------~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~ 291 (579)
...... .....+.|.|..+..+|+|.|+|.|.|..+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~ 226 (234)
T 2j6e_L 179 KAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVE 226 (234)
T ss_dssp CSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCC
T ss_pred CCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceE
Confidence 654210 112336799999999999999999999887543
No 337
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.71 E-value=3.2e-18 Score=153.15 Aligned_cols=175 Identities=14% Similarity=0.174 Sum_probs=96.2
Q ss_pred ceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCE--Ec---c-------CCCCceEEEcCCCCeEEEEECcCCCCC
Q psy16852 107 KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE--EI---L-------PDNGHTMEFNPTTGECVLSISEATPQD 174 (579)
Q Consensus 107 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~---~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d 174 (579)
.+...+..+.+.+|++++|.|.+.+.|.+.+.||+++. .+ . .....++......+..+|.|.+++.+|
T Consensus 25 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 104 (233)
T 3bqu_C 25 TVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSED 104 (233)
T ss_dssp CEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCC
T ss_pred eEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHH
Confidence 34444566778899999999999888888999998532 11 0 000011111111234589999999999
Q ss_pred CeEEEEEEEcCCceeEE-EEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCC-eEEEEECCEE
Q psy16852 175 EAVYSVKAVNTFGRAEC-RANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTP-EVKWFKNGKE 251 (579)
Q Consensus 175 ~G~Y~C~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~ 251 (579)
+|.|+|.+.+..+.... ...+.+.. ...+|.+...+......+|+.++|.|.+.+. |.+ .+.|+++|..
T Consensus 105 ~G~Y~C~~~~~~~~~~~~~~~l~V~~--------~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~ 176 (233)
T 3bqu_C 105 VADYYCLQSDNLPYTFGGGTNLEIKR--------ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE 176 (233)
T ss_dssp CSEEEEEECSSSSCCBCCCCBC---C--------CCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC---
T ss_pred CEEEEEEEecCCceeecCCEEEEEeC--------CCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCee
Confidence 99999999887542211 11223221 1125555543332233468999999999984 444 7999999988
Q ss_pred eccC-ceE---------EeCCeEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852 252 IVSK-DIE---------TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGE 289 (579)
Q Consensus 252 i~~~-~~~---------~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~ 289 (579)
+... ... .....+.|.|.....+|+|.|+|.|.|....
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 224 (233)
T 3bqu_C 177 RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 224 (233)
T ss_dssp --CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred CCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 7655 110 0112357889999999999999999987643
No 338
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.71 E-value=1.4e-16 Score=146.08 Aligned_cols=181 Identities=14% Similarity=0.173 Sum_probs=115.6
Q ss_pred CceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCE-----EccC-------CCCceEEEcCCCCeEEEEECcCCCC
Q psy16852 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE-----EILP-------DNGHTMEFNPTTGECVLSISEATPQ 173 (579)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~-----~~~~-------~~~~~~~~~~~~~~~~l~i~~~~~~ 173 (579)
+.+...+..+.+.+|++++|.|.+.+.|.+.+.||+++. .+.. ....++......+..+|.|.+++.+
T Consensus 13 ~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 92 (276)
T 3auv_A 13 IQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPE 92 (276)
T ss_dssp CCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred eeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChh
Confidence 345555677889999999999999888889999998542 1110 1111222222345678999999999
Q ss_pred CCeEEEEEEEcCCcee-EEEEEEEEeeccccC---CCCccCCCeEeccCCceeeCCCCeEEEEEEEEccC--CCeEEEEE
Q psy16852 174 DEAVYSVKAVNTFGRA-ECRANLVLRKATTID---KPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTP--TPEVKWFK 247 (579)
Q Consensus 174 d~G~Y~C~~~~~~~~~-~~~~~~~v~~~~~~~---~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~ 247 (579)
|+|.|+|.+.+..+.. .....+.|....... ......++.....+....+.+|+.++|.|.+.+.+ .+.+.|++
T Consensus 93 DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k 172 (276)
T 3auv_A 93 DFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVR 172 (276)
T ss_dssp GCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred hCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEE
Confidence 9999999999875431 112334443210000 00000122223334556789999999999999876 47999999
Q ss_pred CC--EEe---c---------------cCceEEe----CCeEEEEEcccCCCCCeEEEEEEEcC
Q psy16852 248 NG--KEI---V---------------SKDIETK----DNVTKLVIKQTTKKTTGKYEIRVVNE 286 (579)
Q Consensus 248 ~~--~~i---~---------------~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~a~n~ 286 (579)
++ ... . ....... .....|.|.+++.+|+|.|+|.|.|.
T Consensus 173 ~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 235 (276)
T 3auv_A 173 QAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVF 235 (276)
T ss_dssp ECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred cCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence 63 111 0 0111111 24458999999999999999999997
No 339
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.71 E-value=3.5e-17 Score=143.01 Aligned_cols=166 Identities=13% Similarity=0.118 Sum_probs=108.7
Q ss_pred EccCCcEEEEEEEEeec---C-CeEEEEECCEEccCCCCc-eEEEcCC--CCeEEEEECcCCCCCCeEEEEEEEcCCcee
Q psy16852 117 AEAQSPATLKATVTGRP---T-PSICWYRGKEEILPDNGH-TMEFNPT--TGECVLSISEATPQDEAVYSVKAVNTFGRA 189 (579)
Q Consensus 117 ~~~g~~~~l~C~~~~~p---~-~~i~W~~~~~~~~~~~~~-~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (579)
+.+|+.++|.|.+.+.+ . ..|.|++++..+...... ....... .....|.|.+++.+|+|.|+|.+.+..+..
T Consensus 15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~ 94 (207)
T 2vol_A 15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA 94 (207)
T ss_dssp HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence 67899999999998884 2 599999999776432100 0001000 113579999999999999999999987754
Q ss_pred EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCC-eEEEEECCEEeccCce---EEeC---
Q psy16852 190 ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTP-EVKWFKNGKEIVSKDI---ETKD--- 261 (579)
Q Consensus 190 ~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~i~~~~~---~~~~--- 261 (579)
.....+.+. ..+..+|.+...+.......|+.+.|.|.+.| .|++ .+.|+++|..+..... ....
T Consensus 95 ~~~~~v~~~-------~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~ 167 (207)
T 2vol_A 95 PIEKTISKT-------KGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGS 167 (207)
T ss_dssp CEEEEECCC-------CCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSC
T ss_pred ceEEEeccC-------CCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCC
Confidence 222222210 01234566544333222335899999999998 4553 8999999998754321 1111
Q ss_pred --CeEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852 262 --NVTKLVIKQTTKKTTGKYEIRVVNEAGE 289 (579)
Q Consensus 262 --~~~~l~i~~~~~~d~G~y~C~a~n~~g~ 289 (579)
..+.|.|.....+|.|.|+|.|.|....
T Consensus 168 ~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~ 197 (207)
T 2vol_A 168 YFVYSKLNVQKSNWEAGNTFTCSVLHEGLH 197 (207)
T ss_dssp EEEEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred EEEEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence 1234666666667899999999997643
No 340
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.71 E-value=1.7e-16 Score=140.09 Aligned_cols=171 Identities=14% Similarity=0.169 Sum_probs=115.7
Q ss_pred CceEEccCCcEEEEEEEEeec--CCeEEEEECC--E---Ecc--------------CCCCceEEEcCCCCeEEEEECcCC
Q psy16852 113 KPVIAEAQSPATLKATVTGRP--TPSICWYRGK--E---EIL--------------PDNGHTMEFNPTTGECVLSISEAT 171 (579)
Q Consensus 113 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~---~~~--------------~~~~~~~~~~~~~~~~~l~i~~~~ 171 (579)
..+.+.+|++++|.|.+.+.+ .+.+.||+.. . .+. ...++.+..+...+..+|.|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 87 (220)
T 2fbj_H 8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR 87 (220)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC
T ss_pred CCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCC
Confidence 457788999999999998765 5789999853 1 111 113344444444567899999999
Q ss_pred CCCCeEEEEEEEcCCcee---EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CC--CeEEE
Q psy16852 172 PQDEAVYSVKAVNTFGRA---ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PT--PEVKW 245 (579)
Q Consensus 172 ~~d~G~Y~C~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--~~v~W 245 (579)
.+|+|.|.|.+.+..+.. .....+.|... ...+|.+...+ ...+..|+.++|.|.+.+. |. +.+.|
T Consensus 88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~-------~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W 159 (220)
T 2fbj_H 88 SEDTALYYCARLHYYGYNAYWGQGTLVTVSAE-------SARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTW 159 (220)
T ss_dssp GGGCEEEEEEEEETTTEEEEECCCEEEEECSS-------CCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEE
T ss_pred hhhCEEEEEEEeccccccceecCCEEEEecCC-------CCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEE
Confidence 999999999999875421 11234444321 11345554333 2346789999999999886 76 69999
Q ss_pred EECCEEecc--Cc-eE----EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeE
Q psy16852 246 FKNGKEIVS--KD-IE----TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEAR 291 (579)
Q Consensus 246 ~~~~~~i~~--~~-~~----~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~ 291 (579)
++++..+.. .. .. .....+.|.|.....+|.|.|+|.|.|..+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~ 212 (220)
T 2fbj_H 160 GKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ 212 (220)
T ss_dssp SCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred ecCCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence 999876421 00 00 111124689999988999999999999887643
No 341
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=99.71 E-value=5.9e-17 Score=143.76 Aligned_cols=174 Identities=16% Similarity=0.177 Sum_probs=111.3
Q ss_pred CCceEEccCCcEEEEEEEEeec--CCeEEEEECC--EE---c---c-----------CCCCceEEEcCCCCeEEEEECcC
Q psy16852 112 LKPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EE---I---L-----------PDNGHTMEFNPTTGECVLSISEA 170 (579)
Q Consensus 112 ~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~---~---~-----------~~~~~~~~~~~~~~~~~l~i~~~ 170 (579)
+..+.+.+|++++|.|.+.+.+ .+.+.||+++ .. + . ...+..+..+...+..+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (227)
T 1mju_H 7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL 86 (227)
T ss_dssp CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCC
Confidence 4456788999999999998766 5899999853 11 1 0 02334444343456789999999
Q ss_pred CCCCCeEEEEEEEcCCceeE-EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCC-eEEEEE
Q psy16852 171 TPQDEAVYSVKAVNTFGRAE-CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTP-EVKWFK 247 (579)
Q Consensus 171 ~~~d~G~Y~C~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~ 247 (579)
+.+|+|.|+|.+.+..+... ....+.|... ...+|.+........+..|+.++|.|.+.+. |.+ .+.|++
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~-------~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~ 159 (227)
T 1mju_H 87 TSDDSAVYYCANKLGWFPYWGQGTLVTVSAA-------KTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNS 159 (227)
T ss_dssp CGGGCEEEEEEEEETTEEEECCCEEEEECSS-------CCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGG
T ss_pred CcccCEEEEEEECCCCceEEcCcEEEEEcCC-------CCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEec
Confidence 99999999999988632211 1234444311 0123444432222245679999999999985 776 999999
Q ss_pred CCEEecc---CceE---EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEE
Q psy16852 248 NGKEIVS---KDIE---TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTS 293 (579)
Q Consensus 248 ~~~~i~~---~~~~---~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~ 293 (579)
++..+.. .... .....+.|.|.....+| |.|+|.|.|..+.....
T Consensus 160 ~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~ 210 (227)
T 1mju_H 160 GSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVD 210 (227)
T ss_dssp GTBCTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEE
T ss_pred CCCcCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceE
Confidence 9875421 1111 11234578999988888 99999999977654433
No 342
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=99.71 E-value=2.6e-16 Score=120.19 Aligned_cols=96 Identities=28% Similarity=0.365 Sum_probs=88.4
Q ss_pred cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
...+|.|...|.++.+.+|+.+.|.|.+.+.|.+.+.|+++|..+....++..........|.|.+++.+|+|.|+|.|.
T Consensus 5 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 84 (103)
T 3qp3_A 5 LDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCT 84 (103)
T ss_dssp TCEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred CCCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEE
Confidence 34589999999999999999999999999999999999999999988888888877788899999999999999999999
Q ss_pred cCCeeeEEEEEEEEEe
Q psy16852 83 NIGGVATCSANLIVLE 98 (579)
Q Consensus 83 ~~~g~~~~~~~~~v~~ 98 (579)
|..|.....+.|.|..
T Consensus 85 N~~G~~~~~~~l~V~~ 100 (103)
T 3qp3_A 85 NYKGEASDYATLDVTG 100 (103)
T ss_dssp ETTEEEEEEEEEEEEC
T ss_pred eCCCcEEEEEEEEEEC
Confidence 9999998888888864
No 343
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Probab=99.71 E-value=4.4e-17 Score=145.93 Aligned_cols=176 Identities=15% Similarity=0.194 Sum_probs=114.2
Q ss_pred cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC--EE---ec------------CCCCEEEEE-eCCEEEEEEcCCC
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG--TE---LH------------ATEHYLITT-VESVSTLEIINPT 70 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g--~~---~~------------~~~~~~~~~-~~~~~~L~i~~~~ 70 (579)
++..|.++.+.+|+.++|.|.+. .+.+.+.|||++ .. +. ...++.+.. .....+|+|.+++
T Consensus 2 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~ 80 (238)
T 1bec_A 2 VTQSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELAT 80 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCC
T ss_pred cccCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCC
Confidence 45678899999999999999985 456799999953 11 10 123443332 2356799999999
Q ss_pred CCCCEEEEEEEEcCCe-----eeEEEEEEEEEecccCCCCCceec-CCCceEEccCCcEEEEEEEEee-cCC-eEEEEEC
Q psy16852 71 KEDIGVYTCKATNIGG-----VATCSANLIVLEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGR-PTP-SICWYRG 142 (579)
Q Consensus 71 ~~d~G~Y~C~~~~~~g-----~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~ 142 (579)
.+|+|.|+|.+.+..+ .......|.|........+|.+.. .+....+.+|+.++|.|.+.+. |.+ .|.|+++
T Consensus 81 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~ 160 (238)
T 1bec_A 81 PSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVN 160 (238)
T ss_dssp GGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEET
T ss_pred cccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEEC
Confidence 9999999999998631 112234677765322223444432 3333445679999999999886 654 9999999
Q ss_pred CEEccCCCCce---EEEcCCCCe----EEEEECcCCCCC-CeEEEEEEEcCCc
Q psy16852 143 KEEILPDNGHT---MEFNPTTGE----CVLSISEATPQD-EAVYSVKAVNTFG 187 (579)
Q Consensus 143 ~~~~~~~~~~~---~~~~~~~~~----~~l~i~~~~~~d-~G~Y~C~~~~~~~ 187 (579)
+..+....... ... .++. ..|.|......| .|.|+|.+.|...
T Consensus 161 g~~~~~~~~~~~~~~~~--~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l 211 (238)
T 1bec_A 161 GKEVHSGVSTDPQAYKE--SNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL 211 (238)
T ss_dssp TEEECTTEEECSSCEEE--ETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred CEECCCceecccceEeC--CCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence 98876542110 111 1122 234554444444 6789999998743
No 344
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=99.70 E-value=7.3e-17 Score=143.07 Aligned_cols=171 Identities=12% Similarity=0.132 Sum_probs=113.5
Q ss_pred CceEEccCCcEEEEEEEEeec--CCeEEEEECC--EE---cc--------------CCCCceEEEcCCCCeEEEEECcCC
Q psy16852 113 KPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EE---IL--------------PDNGHTMEFNPTTGECVLSISEAT 171 (579)
Q Consensus 113 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~---~~--------------~~~~~~~~~~~~~~~~~l~i~~~~ 171 (579)
..+.+.+|++++|.|.+.+.+ .+.+.||+.. .. +. ...+..+..+...+..+|.|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 87 (225)
T 1op3_H 8 GGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMR 87 (225)
T ss_dssp CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCC
Confidence 346788999999999998766 6899999853 11 10 123344444444567899999999
Q ss_pred CCCCeEEEEEEEcCCc-----ee-E--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCC-
Q psy16852 172 PQDEAVYSVKAVNTFG-----RA-E--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTP- 241 (579)
Q Consensus 172 ~~d~G~Y~C~~~~~~~-----~~-~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~- 241 (579)
.+|+|.|+|.+.+..+ .. . ....+.|... ...+|.+........+..|+.++|.|.+.+. |.+
T Consensus 88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~-------~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~ 160 (225)
T 1op3_H 88 VEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPA-------STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV 160 (225)
T ss_dssp GGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESC-------SCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCC
T ss_pred hhhCEEEEEEEecCCCccccccceeecCCEEEecccC-------CCcCCeEEEecccccccCCCcEEEEEEEEeEECCCe
Confidence 9999999999998754 11 1 1234444321 1123444322211135679999999999985 776
Q ss_pred eEEEEECCEEeccC---ceE----EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeE
Q psy16852 242 EVKWFKNGKEIVSK---DIE----TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEAR 291 (579)
Q Consensus 242 ~v~W~~~~~~i~~~---~~~----~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~ 291 (579)
.+.|++++..+... ... .....+.|.|.....+| |.|+|.|.|..+...
T Consensus 161 ~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~ 216 (225)
T 1op3_H 161 TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK 216 (225)
T ss_dssp EEECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred EEEEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCcc
Confidence 99999998653210 010 01123568999998888 999999999776543
No 345
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.70 E-value=1.8e-16 Score=142.29 Aligned_cols=176 Identities=14% Similarity=0.141 Sum_probs=111.8
Q ss_pred eecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCE-----Ecc---------CCCCceEEEcCCCCeEEEEECcCCCC
Q psy16852 108 FTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE-----EIL---------PDNGHTMEFNPTTGECVLSISEATPQ 173 (579)
Q Consensus 108 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~-----~~~---------~~~~~~~~~~~~~~~~~l~i~~~~~~ 173 (579)
+...+..+.+.+|++++|.|.+.+.|.+.+.||++.. .+. ...++.+ ....+..+|.|.+++.+
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~L~I~~v~~~ 81 (242)
T 2znx_A 4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSG--SGSGTDFTLSINSVETE 81 (242)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEE--EEETTEEEEEESSCCGG
T ss_pred EEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEE--ecCCCEEEEEECCCChH
Confidence 3445566788999999999999888889999998531 111 0122222 22345678999999999
Q ss_pred CCeEEEEEEEcCCceeE-EEEEEEEeecccc---CCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccC--CCeEEEEE
Q psy16852 174 DEAVYSVKAVNTFGRAE-CRANLVLRKATTI---DKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTP--TPEVKWFK 247 (579)
Q Consensus 174 d~G~Y~C~~~~~~~~~~-~~~~~~v~~~~~~---~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~ 247 (579)
|+|.|+|.+.+..+... ....+.|...... .......+..+..+ ....+.+|++++|.|.+.+.+ .+.+.|++
T Consensus 82 D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k 160 (242)
T 2znx_A 82 DFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQES-GPSLVKPSQTLSLTCSVTGDSITSDYXSXIR 160 (242)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEE-CCSEECTTSCEEEEEEEESSCGGGSCEEEEE
T ss_pred HCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecC-CcceecCCCeEEEEEEEEccccCCcceeeEe
Confidence 99999999998754211 1234444321100 00000011122222 234588999999999999875 46899998
Q ss_pred C--CEEec-----------------cCceEE----eCCeEEEEEcccCCCCCeEEEEEEEcC
Q psy16852 248 N--GKEIV-----------------SKDIET----KDNVTKLVIKQTTKKTTGKYEIRVVNE 286 (579)
Q Consensus 248 ~--~~~i~-----------------~~~~~~----~~~~~~l~i~~~~~~d~G~y~C~a~n~ 286 (579)
+ +..+. ...... ......|.|.+++.+|+|.|+|.|.|.
T Consensus 161 ~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 222 (242)
T 2znx_A 161 KFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG 222 (242)
T ss_dssp ECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred eCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence 4 22210 111111 134568999999999999999999873
No 346
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=99.70 E-value=3.4e-16 Score=118.58 Aligned_cols=96 Identities=30% Similarity=0.436 Sum_probs=84.9
Q ss_pred cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEE-EeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLIT-TVESVSTLEIINPTKEDIGVYTCKA 81 (579)
Q Consensus 3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (579)
...||.|...|.+..+.+|+.++|.|.+.|.|.+.+.|+++|..+....++... .......|.|.+++.+|+|.|+|.|
T Consensus 2 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 81 (99)
T 1g1c_A 2 SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKA 81 (99)
T ss_dssp CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred CCCCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEE
Confidence 356899999999999999999999999999999999999999999877666543 3456789999999999999999999
Q ss_pred EcCCeeeEEEEEEEEEe
Q psy16852 82 TNIGGVATCSANLIVLE 98 (579)
Q Consensus 82 ~~~~g~~~~~~~~~v~~ 98 (579)
.|..|.....+.|.|..
T Consensus 82 ~N~~g~~~~~~~l~V~~ 98 (99)
T 1g1c_A 82 INIAGETSSHAFLLVQA 98 (99)
T ss_dssp EETTEEEEEEEEEEEEC
T ss_pred EECCCcEEEEEEEEEec
Confidence 99999998888888853
No 347
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.70 E-value=1.9e-15 Score=128.83 Aligned_cols=156 Identities=10% Similarity=0.079 Sum_probs=109.7
Q ss_pred eEEccCCcEEEEEEEEeecCC--eEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEE
Q psy16852 115 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECR 192 (579)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 192 (579)
+.+..|++++|.|.+ +.|.+ .|.|++.+..+ .+.. .. .+...|.|.+++.+|+|.|.|.+.+..+.....
T Consensus 17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~~~--~~--~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~ 88 (210)
T 1gsm_A 17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GAVQ--SD--TGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHT 88 (210)
T ss_dssp EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CCEE--EE--SSEEEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---CcEE--ec--CCccEEEECccCcccCceEEEEEEeCCCceEEE
Confidence 678899999999999 88877 99999855433 1111 11 345789999999999999999999988776666
Q ss_pred EEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CC----CeEEEEECCEEeccCce---EE-----
Q psy16852 193 ANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PT----PEVKWFKNGKEIVSKDI---ET----- 259 (579)
Q Consensus 193 ~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~----~~v~W~~~~~~i~~~~~---~~----- 259 (579)
..++|. .+|........ .+..|+.+ |.|.+.+. |. +++.|+|++.++..... ..
T Consensus 89 ~~ltV~-----------~~P~~~~i~~~-~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~ 155 (210)
T 1gsm_A 89 VQLLVY-----------AFPNQLTVSPA-ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEE 155 (210)
T ss_dssp EEEEEE-----------BCCSEEEEESS-SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTT
T ss_pred EEEEEE-----------ecCCCcEEccc-eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccc
Confidence 777665 34432221111 46677888 99999984 64 38999999999865431 11
Q ss_pred ---------eCCeEEEEEcccCCCCCeEEEEEEEcCCeeeE
Q psy16852 260 ---------KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEAR 291 (579)
Q Consensus 260 ---------~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~ 291 (579)
....+.+.+.....++.+.|+|+|.+..-...
T Consensus 156 ~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~~~ 196 (210)
T 1gsm_A 156 EPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPGLE 196 (210)
T ss_dssp CCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEETTEE
T ss_pred cccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCCCCc
Confidence 11123444556666777899999987654333
No 348
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.70 E-value=4.2e-16 Score=138.67 Aligned_cols=178 Identities=17% Similarity=0.210 Sum_probs=112.7
Q ss_pred CceEEccCCcEEEEEEEEeec--CCeEEEEECC--E---Ecc-------------CCCCceEEEcCCCCeEEEEECcCCC
Q psy16852 113 KPVIAEAQSPATLKATVTGRP--TPSICWYRGK--E---EIL-------------PDNGHTMEFNPTTGECVLSISEATP 172 (579)
Q Consensus 113 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~---~~~-------------~~~~~~~~~~~~~~~~~l~i~~~~~ 172 (579)
..+.+.+|++++|.|.+.+.+ .+.+.||+.. . .+. ...++.+..+...+..+|.|.+++.
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 87 (232)
T 1dn0_B 8 GAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTA 87 (232)
T ss_dssp CCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCc
Confidence 446788999999999998764 5789999853 1 110 1233444444445678999999999
Q ss_pred CCCeEEEEEEEcCC--ce----eEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCC-CeEEEEEEEEcc-CCC-eE
Q psy16852 173 QDEAVYSVKAVNTF--GR----AECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKD-STVTLEAEYTGT-PTP-EV 243 (579)
Q Consensus 173 ~d~G~Y~C~~~~~~--~~----~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g-~~~~l~C~~~~~-p~~-~v 243 (579)
+|+|.|+|.+.+.. +. ......+.|... ...+|.+........+..| +.++|.|.+.+. |.+ .+
T Consensus 88 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~-------~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v 160 (232)
T 1dn0_B 88 ADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSG-------SASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITF 160 (232)
T ss_dssp GGCEEEEEEECSSTTSCSCCSEECCCEEEEECSS-------CCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEE
T ss_pred ccCEEEEEEEecCCcCCchhhhcccceEEEEccC-------CCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEE
Confidence 99999999998421 11 112234444321 1123444322111224467 999999999885 776 99
Q ss_pred EEEE-CCEEeccCc----e---EEeCCeEEEEEcccCC--CCCeEEEEEEEcCCeeeEEEEEEE
Q psy16852 244 KWFK-NGKEIVSKD----I---ETKDNVTKLVIKQTTK--KTTGKYEIRVVNEAGEARTSGSVT 297 (579)
Q Consensus 244 ~W~~-~~~~i~~~~----~---~~~~~~~~l~i~~~~~--~d~G~y~C~a~n~~g~~~~~~~~~ 297 (579)
.|++ +|..+.... . ......+.|.|..... +|.|.|+|.|.|..+.......+.
T Consensus 161 ~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~ 224 (232)
T 1dn0_B 161 SWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLP 224 (232)
T ss_dssp EEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECC
T ss_pred EEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecC
Confidence 9999 998875410 0 0112235688888886 789999999999988765554443
No 349
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.69 E-value=4.4e-16 Score=140.44 Aligned_cols=177 Identities=12% Similarity=0.127 Sum_probs=112.1
Q ss_pred eecCCCceEEccCCcEEEEEEEEeec-----CCeEEEEECC--E--E-cc---------CCCCceEEEcCCCCeEEEEEC
Q psy16852 108 FTKPLKPVIAEAQSPATLKATVTGRP-----TPSICWYRGK--E--E-IL---------PDNGHTMEFNPTTGECVLSIS 168 (579)
Q Consensus 108 ~~~~~~~~~~~~g~~~~l~C~~~~~p-----~~~i~W~~~~--~--~-~~---------~~~~~~~~~~~~~~~~~l~i~ 168 (579)
+...+..+.+.+|+.++|.|.+.+.+ .+.+.||++. . . +. ...++.. ....+..+|.|.
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~L~I~ 81 (247)
T 1svz_A 4 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSG--SGSGTDFTLKIS 81 (247)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEE--EEETTEEEEEES
T ss_pred EEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEe--ccCCCEEEEEEC
Confidence 33445677889999999999998877 6899999842 1 1 11 0122222 223456789999
Q ss_pred cCCCCCCeEEEEEEEcCCceeE-EEEEEEEeeccccC-CC-CccCCCeEeccCCceeeCCCCeEEEEEEEEccC--CCeE
Q psy16852 169 EATPQDEAVYSVKAVNTFGRAE-CRANLVLRKATTID-KP-RVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTP--TPEV 243 (579)
Q Consensus 169 ~~~~~d~G~Y~C~~~~~~~~~~-~~~~~~v~~~~~~~-~~-~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~v 243 (579)
+++.+|+|.|+|.+.+..+... ....+.|....... .+ ....++.....+....+.+|+.++|.|.+.+.+ .+.+
T Consensus 82 ~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v 161 (247)
T 1svz_A 82 RVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSM 161 (247)
T ss_dssp SCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCE
T ss_pred CCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEE
Confidence 9999999999999998754321 12344443211000 00 000022222223334589999999999999874 4689
Q ss_pred EEEECC--EEe------c------------cCceEE----eCCeEEEEEcccCCCCCeEEEEEEEcC
Q psy16852 244 KWFKNG--KEI------V------------SKDIET----KDNVTKLVIKQTTKKTTGKYEIRVVNE 286 (579)
Q Consensus 244 ~W~~~~--~~i------~------------~~~~~~----~~~~~~l~i~~~~~~d~G~y~C~a~n~ 286 (579)
.|++++ ... . ...... ......|.|.+++.+|+|.|.|.|.|.
T Consensus 162 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 162 HWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp EEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred EEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence 999953 211 0 111111 234568999999999999999999985
No 350
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.69 E-value=3e-16 Score=138.25 Aligned_cols=185 Identities=18% Similarity=0.226 Sum_probs=129.2
Q ss_pred CCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc-----eEEeCCeEEEEEcccCCCCCeEEEEEEE
Q psy16852 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVTKLVIKQTTKKTTGKYEIRVV 284 (579)
Q Consensus 210 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~-----~~~~~~~~~l~i~~~~~~d~G~y~C~a~ 284 (579)
.+|.+. .+....+.+|+.+.|.|.+.+.|.+.+.|+++|..+.... .........|.|.++..+|+|.|+|.|.
T Consensus 18 ~~P~~~-~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 96 (215)
T 3mtr_A 18 YAPKLQ-GPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAV 96 (215)
T ss_dssp EEEEEE-CCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEE
T ss_pred cCCccc-CCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEE
Confidence 455553 4555789999999999999999999999999999987653 2223457899999999999999999999
Q ss_pred cCCeeeEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCC--eEEEEECCEEccCCCeEEEEECCCC
Q psy16852 285 NEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTP--LVTWSHDGTPMKEGKEVTIYQDTDG 362 (579)
Q Consensus 285 n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~ 362 (579)
|..|.......+.|...+..+..+... .......+.|.... ...|.|.. .+.|.+++........... .....
T Consensus 97 n~~g~~~~~~~l~v~~~P~~p~~~~~~-~~~~~~~l~w~~p~---~~~~~pi~~y~v~~~~~~~~~w~~~~~~~-~~~~~ 171 (215)
T 3mtr_A 97 NRIGQESLEFILVQADTPSSPSIDQVE-PYSSTAQVQFDEPE---ATGGVPILKYKAEWRAVGEEVWHSKWYDA-KEASM 171 (215)
T ss_dssp CSSCEEEEEEEEEECCCCCCCEEEEEE-EETTEEEEEEECCS---CCCSSCEEEEEEEEEETTCCCCEEEEEEH-HHHHH
T ss_pred ECCCceEEEEEEEECCCCCCCcceEEE-EecceEEEEEecCC---ccCCCceEEEEEEEEECCCCccccccccc-ccccc
Confidence 999998877777776555555544443 22334456664221 12233333 4788887753211100000 00000
Q ss_pred eEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEe
Q psy16852 363 LCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400 (579)
Q Consensus 363 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 400 (579)
...|.|.++...+.|.|+|.|.|..|.+..+..+.+..
T Consensus 172 ~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T 209 (215)
T 3mtr_A 172 EGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 209 (215)
T ss_dssp HTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEEC
T ss_pred cccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEe
Confidence 12799999999999999999999999887777666664
No 351
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.69 E-value=3.5e-16 Score=140.89 Aligned_cols=200 Identities=17% Similarity=0.239 Sum_probs=117.2
Q ss_pred EEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEE--ccCCCeEEEEECCCCeEEEEEcccCCC
Q psy16852 297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTP--MKEGKEVTIYQDTDGLCKLAISEVFPE 374 (579)
Q Consensus 297 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~ 374 (579)
.+.+..|..+.|.|.+...+...+.|+... .+.....+.+..++.. .....++.+..+..+.++|.|.+++.+
T Consensus 10 ~v~v~~G~~v~L~C~~~~~~~~~v~W~k~~-----~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~ 84 (245)
T 3nfj_J 10 TLVQPVGSPLSLECTVEGTSNPNLYWYRQA-----AGRGLQLLFYSVGIGQISSEVPQNLSASRPQDRQFILSSKKLLLS 84 (245)
T ss_dssp EEEEETTCCEEEEEEEESCSSCEEEEEEES-----TTSCEEEEEEESSTTCCBCSSCCSSEEEEEETTEEEEEESSCCGG
T ss_pred eEEecCCCCEEEEEEecCCCCceEEEEEEC-----CCCCcEEEEEECCCcccCCccCCcEEEEecCCCEEEEEECCCChh
Confidence 355778888888887654444444443210 0000000111111110 111234444443456679999999999
Q ss_pred CCEEEEEEEEcCce------eEEEEEEEEEEecccCCCCCeeec-CCCceeeecCCCeEEEEEEEee-CCC-eEEEeeCC
Q psy16852 375 NAGLYSCTAVNPVG------EAVAAATLAVEEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGR-PTP-SICWYRGK 445 (579)
Q Consensus 375 d~G~Y~C~a~n~~g------~~~~~~~l~v~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~-p~~-~v~W~~~~ 445 (579)
|+|.|.|.+.+..| .......|.|........+|.+.. .+....+..|+.++|.|.+.|. |++ .+.|+++|
T Consensus 85 D~G~Y~C~~~~~~g~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g 164 (245)
T 3nfj_J 85 DSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNG 164 (245)
T ss_dssp GCEEEEEEEECCTTTSSCCCEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred hCEEEEEEEeeccCCCceeEEECCCeEEEEEcccCCCCCCceEeecCCcccccCCCceEEEEEEccCcCCCEEEEEEECC
Confidence 99999999998322 233445677765322334565543 3333445669999999999985 444 78999999
Q ss_pred EEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeeccccc-ceeEEEEEEeCCeeE
Q psy16852 446 EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQ-IGDVTCRAENVAGSV 524 (579)
Q Consensus 446 ~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~ 524 (579)
..+........ ..+......+.|.|... +.|.|.....+| .|.|+|.|.|.....
T Consensus 165 ~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~--------------s~L~i~~~~~~d~g~~YtC~v~~~~~~~ 220 (245)
T 3nfj_J 165 KEVHSGVCTDP----------QPLKEQPALNDSRYALS--------------SRLRVSATFWQNPRNHFRCQVQFYGLSE 220 (245)
T ss_dssp EEECTTEEECS----------SCEESSSSSTTCCEEEE--------------EEEEEEHHHHTCTTCEEEEEEEECCBCS
T ss_pred EECCCCccccc----------ccccccccCCCCCEEEE--------------EEEEECHHHhccCCCeEEEEEEECCCCC
Confidence 98854321100 00111112244555433 349999998888 679999999986654
Q ss_pred E
Q psy16852 525 T 525 (579)
Q Consensus 525 ~ 525 (579)
.
T Consensus 221 ~ 221 (245)
T 3nfj_J 221 N 221 (245)
T ss_dssp S
T ss_pred c
Confidence 4
No 352
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Probab=99.69 E-value=4.7e-17 Score=147.25 Aligned_cols=177 Identities=16% Similarity=0.182 Sum_probs=113.0
Q ss_pred cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEE---e---cCC---------C-CEEEEEeCCEEEEEEcCCC
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTE---L---HAT---------E-HYLITTVESVSTLEIINPT 70 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~---~---~~~---------~-~~~~~~~~~~~~L~i~~~~ 70 (579)
+...|..+.+.+|++++|.|.+.+.+.+.+.|||. +.. + ... . ++......... |+|.+++
T Consensus 4 v~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~ 82 (253)
T 3to4_D 4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVAN 82 (253)
T ss_dssp CEEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEES
T ss_pred EEeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCC
Confidence 44568889999999999999988777789999982 111 1 000 1 33332222223 9999999
Q ss_pred CCCCEEEEEEEEcCCe------eeEEEEEEEEEecccCCCCCceec-CCCceEEccCCcEEEEEEEEe-ecCC-eEEEEE
Q psy16852 71 KEDIGVYTCKATNIGG------VATCSANLIVLEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTG-RPTP-SICWYR 141 (579)
Q Consensus 71 ~~d~G~Y~C~~~~~~g------~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~ 141 (579)
.+|+|.|+|.+.+..+ .....+.+.|........+|.+.. .+....+..|+.++|.|.+.+ +|.+ .++|++
T Consensus 83 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k 162 (253)
T 3to4_D 83 MSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV 162 (253)
T ss_dssp CSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred hhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEE
Confidence 9999999999986533 222334666764322223444332 222223345789999999988 5556 899999
Q ss_pred CCEEccCCCCceE--EEc--C-CCCe----EEEEECcCCCCC-CeEEEEEEEcCC
Q psy16852 142 GKEEILPDNGHTM--EFN--P-TTGE----CVLSISEATPQD-EAVYSVKAVNTF 186 (579)
Q Consensus 142 ~~~~~~~~~~~~~--~~~--~-~~~~----~~l~i~~~~~~d-~G~Y~C~~~~~~ 186 (579)
++..+........ ... . .++. +.|.|.....+| .|.|+|.+.|..
T Consensus 163 ~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~ 217 (253)
T 3to4_D 163 NGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG 217 (253)
T ss_dssp TTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred CCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence 9988754321100 000 0 1121 468888887777 779999998864
No 353
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.69 E-value=1.5e-16 Score=141.43 Aligned_cols=173 Identities=15% Similarity=0.220 Sum_probs=111.8
Q ss_pred CceEEccCCcEEEEEEEEeecC----CeEEEEECC--EE---cc-------------CCCCceEEEcCCCCeEEEEECcC
Q psy16852 113 KPVIAEAQSPATLKATVTGRPT----PSICWYRGK--EE---IL-------------PDNGHTMEFNPTTGECVLSISEA 170 (579)
Q Consensus 113 ~~~~~~~g~~~~l~C~~~~~p~----~~i~W~~~~--~~---~~-------------~~~~~~~~~~~~~~~~~l~i~~~ 170 (579)
..+.+.+|++++|.|.+.+.|. +.+.||+.. .. +. ...+..+..+...+..+|.|.++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 87 (228)
T 3bae_H 8 GPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSV 87 (228)
T ss_dssp CCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSC
T ss_pred CceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCC
Confidence 4467889999999999987664 899999842 11 10 01233333333445689999999
Q ss_pred CCCCCeEEEEEEEcCCc------ee-E--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CC
Q psy16852 171 TPQDEAVYSVKAVNTFG------RA-E--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PT 240 (579)
Q Consensus 171 ~~~d~G~Y~C~~~~~~~------~~-~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~ 240 (579)
+.+|+|.|+|.+.+..| .. . ....+.|... ...+|.+........+.+|+.++|.|.+.+. |.
T Consensus 88 ~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~-------~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~ 160 (228)
T 3bae_H 88 DTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSA-------KTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPE 160 (228)
T ss_dssp CGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSC-------CCBCCEEEEECC-----CCSEEEEEEEEEEEBSS
T ss_pred CcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCC-------CCCCCEEEEecccccccCCCCEEEEEEEccEeCC
Confidence 99999999999988654 11 1 1234444310 1134544433222335689999999999985 77
Q ss_pred C-eEEEEECCEEeccCc---eE---EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEE
Q psy16852 241 P-EVKWFKNGKEIVSKD---IE---TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTS 293 (579)
Q Consensus 241 ~-~v~W~~~~~~i~~~~---~~---~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~ 293 (579)
+ .+.|++++..+.... .. .....+.|.|.....++ |.|+|.|.|..+.....
T Consensus 161 p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~ 219 (228)
T 3bae_H 161 PVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVD 219 (228)
T ss_dssp CCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEE
T ss_pred CEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEE
Confidence 7 999999886532111 00 11124568898888866 99999999988765543
No 354
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.69 E-value=2.3e-16 Score=119.78 Aligned_cols=97 Identities=26% Similarity=0.415 Sum_probs=84.0
Q ss_pred cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEE-EeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLIT-TVESVSTLEIINPTKEDIGVYTCKA 81 (579)
Q Consensus 3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (579)
.+.||.|...|.++.+.+|+.++|.|.+.|.|.+.+.|+++|..+......... ...+...|.|.+++.+|+|.|+|.|
T Consensus 2 ~~~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 81 (100)
T 2kdg_A 2 AMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVA 81 (100)
T ss_dssp CCEEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEE
Confidence 467899999999999999999999999999999999999999998766543333 3345579999999999999999999
Q ss_pred EcCCeeeEEEEEEEEEec
Q psy16852 82 TNIGGVATCSANLIVLEK 99 (579)
Q Consensus 82 ~~~~g~~~~~~~~~v~~~ 99 (579)
.|..|....++.|.|..+
T Consensus 82 ~n~~g~~~~~~~l~V~~~ 99 (100)
T 2kdg_A 82 KNRAGEATFTVQLDVLAK 99 (100)
T ss_dssp EETTEEEEEEEEEEEECC
T ss_pred EcCCCeEEEEEEEEEEec
Confidence 999999888888888753
No 355
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.69 E-value=5.4e-16 Score=139.74 Aligned_cols=198 Identities=15% Similarity=0.203 Sum_probs=123.5
Q ss_pred EEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCC----CeEEEEECCCCeEEEEEcccC
Q psy16852 297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEG----KEVTIYQDTDGLCKLAISEVF 372 (579)
Q Consensus 297 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~ 372 (579)
.+.+..|+.+.|.| ....+...+.|+.. ..+.....+.+..++...... .++.......+.+.|.|.+++
T Consensus 11 ~v~v~~G~~v~L~C-~~~~~~~~v~W~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~ 84 (245)
T 4ei6_B 11 HQIIDMGQMVTLNC-DPVSNHLYFYWYKQ-----ILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTA 84 (245)
T ss_dssp EEEEETTCCEEEEE-ECCTTCCEEEEEEE-----ETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCC
T ss_pred eEEecCCCCEEEEE-EcCCCCCEEEEEEE-----CCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCC
Confidence 35577889999999 44444455555431 011111123333344433221 556655555567799999999
Q ss_pred CCCCEEEEEEEEcC----ceeEEEEEEEEEEecccCCCCCeee-cCCCceeeecCCCeEEEEEEEee-CCC-eEEEeeCC
Q psy16852 373 PENAGLYSCTAVNP----VGEAVAAATLAVEEKEESGEAPKFT-KPLKPVIAEAQSPATLKATVTGR-PTP-SICWYRGK 445 (579)
Q Consensus 373 ~~d~G~Y~C~a~n~----~g~~~~~~~l~v~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~g~-p~~-~v~W~~~~ 445 (579)
.+|+|.|+|.+.+. .+.......|.|........+|.+. ..+....+..|+.++|.|.+.|. |.+ .+.|+++|
T Consensus 85 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g 164 (245)
T 4ei6_B 85 LEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG 164 (245)
T ss_dssp GGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred HhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEECC
Confidence 99999999999953 2334445567776432222355544 34444556679999999999984 444 89999999
Q ss_pred EEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeeccccc-ceeEEEEEEeCCeeE
Q psy16852 446 EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQ-IGDVTCRAENVAGSV 524 (579)
Q Consensus 446 ~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~ 524 (579)
..+....+... ..+......+.|.|.+.. .|.|.....+| .|.|+|.|.|.....
T Consensus 165 ~~l~~~~~~~~----------~~~~~~~~~~~g~~~~~s--------------~L~i~~~~~~d~~g~ytC~v~~~~l~~ 220 (245)
T 4ei6_B 165 KEVHSGVCTDP----------QPLKEQPALNDSRYALSS--------------RLRVSATFWQNPRNHFRCQVQFYGLSE 220 (245)
T ss_dssp EEECTTEEECS----------SCEESSTTSTTCCEEEEE--------------EEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred EECCCCccccc----------ccccccccCCCCCEEEEE--------------EEEEcHHHhccCCCeEEEEEEECCCCC
Confidence 98864321110 001112223456665443 39999998888 999999999975544
No 356
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=99.69 E-value=1e-15 Score=137.37 Aligned_cols=194 Identities=16% Similarity=0.192 Sum_probs=122.0
Q ss_pred EEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccC---CCeEEEEECCCCeEEEEEcccCC
Q psy16852 297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKE---GKEVTIYQDTDGLCKLAISEVFP 373 (579)
Q Consensus 297 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~ 373 (579)
.+.+..|..+.|.|.+.. +...+.|+... .+.....+.+..++..... ..++....+..+.++|.|.+++.
T Consensus 11 ~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~-----~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~ 84 (240)
T 3q5y_A 11 HIIKEKGGRSVLTCIPIS-GHSNVVWYQQT-----LGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALEL 84 (240)
T ss_dssp EEEEETTCCEEEEEECCT-TCCEEEEEEEC-----TTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCG
T ss_pred eeeecCCCcEEEEEEeCC-CCceEEEEEEC-----CCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCCh
Confidence 356778999999998653 44455554311 1111222233334333221 24566665556678999999999
Q ss_pred CCCEEEEEEEEc--C-ceeEEEEEEEEEEecccCCCCCeeec-CCCceeeecCCCeEEEEEEEe-eCCC-eEEEeeCCEE
Q psy16852 374 ENAGLYSCTAVN--P-VGEAVAAATLAVEEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTG-RPTP-SICWYRGKEE 447 (579)
Q Consensus 374 ~d~G~Y~C~a~n--~-~g~~~~~~~l~v~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g-~p~~-~v~W~~~~~~ 447 (579)
+|+|.|+|.+.+ . .........|.|........+|.+.. .+....+..|+.++|.|.+.| .|.+ .+.|+++|..
T Consensus 85 ~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~ 164 (240)
T 3q5y_A 85 EDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKE 164 (240)
T ss_dssp GGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred hHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCEE
Confidence 999999999983 2 22333445677764322334565553 344455667999999999998 5656 8999999998
Q ss_pred cCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeeccccc-ceeEEEEEEeCCeeE
Q psy16852 448 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQ-IGDVTCRAENVAGSV 524 (579)
Q Consensus 448 l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~ 524 (579)
+....+.. ........|.|.+. +.|.|..+..+| .|.|+|.|.|.....
T Consensus 165 l~~~~~~~--------------~~~~~~~~g~~~~~--------------s~L~i~~~~~~d~~g~YtC~v~~~~~~~ 214 (240)
T 3q5y_A 165 VHSGVSTD--------------PQAYKESNYSYSLS--------------SRLRVSATFWHNPRNHFRCQVQFHGLSE 214 (240)
T ss_dssp ECTTEEEC--------------SSCEEEETTEEEEE--------------EEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred CcCcEecC--------------CceeeCCCCCEEEE--------------EEEEECHHHhccCCCEEEEEEEcCCCCC
Confidence 85432110 01112223455443 339999999998 679999999976543
No 357
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.69 E-value=3.9e-16 Score=132.40 Aligned_cols=155 Identities=15% Similarity=0.233 Sum_probs=104.8
Q ss_pred CCceEEccCCcEEEEEEEEe-ecCCeEEEEEC-CEEcc------------CCCCceEEEcCCCCeEEEEECcCCCCCCeE
Q psy16852 112 LKPVIAEAQSPATLKATVTG-RPTPSICWYRG-KEEIL------------PDNGHTMEFNPTTGECVLSISEATPQDEAV 177 (579)
Q Consensus 112 ~~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~-~~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 177 (579)
..++.+.+|++++|.|.+.+ .+.+.|.|++. +..+. ...+.+...+ .+.++|.|.+++.+|+|.
T Consensus 6 ~~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~--~~~~sL~I~~v~~~D~G~ 83 (180)
T 2dru_A 6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLD--KTNGALRIYNVSKEDRGD 83 (180)
T ss_dssp CCEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEEC--TTTCCEEECSCCGGGCEE
T ss_pred cceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEe--CCCccEEEcCCCHHHCeE
Confidence 34577889999999998743 23589999994 32221 1111233332 234579999999999999
Q ss_pred EEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEE-EccCCCeEEEEECCEEeccCc
Q psy16852 178 YSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEY-TGTPTPEVKWFKNGKEIVSKD 256 (579)
Q Consensus 178 Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~i~~~~ 256 (579)
|+|.+.+.. .......+.|... ...|.+.. .+..+.|.|.+ .+ |.+.+.|++++..+..
T Consensus 84 Y~C~v~~~~-~~~~~~~L~V~~~--------~~~P~i~~--------~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~-- 143 (180)
T 2dru_A 84 YYMRMLHET-EDQWKITMEVYEM--------VSKPMIYW--------ECSNATLTCEVLEG-TDVELKLYQGKEHLRS-- 143 (180)
T ss_dssp EEEEEESSS-EEEEEEEEEEECC--------CCCCEEEE--------EGGGTEEEEECSSC-TTCEEEEEETTEEEEE--
T ss_pred EEEEEEcCC-eEEEEEEEEEECC--------CCCCEEEe--------cCCCEEEEEEeCCC-CCCEEEEEECCeECcC--
Confidence 999998775 4444445554311 12233321 24569999999 55 8889999999998751
Q ss_pred eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEE
Q psy16852 257 IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSG 294 (579)
Q Consensus 257 ~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~ 294 (579)
.....|.+.. .+|+|.|+|.|.|..+......
T Consensus 144 ----~~~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~ 175 (180)
T 2dru_A 144 ----LRQKTMSYQW--TNLRAPFKCKAVNRVSQESEME 175 (180)
T ss_dssp ----ESSSEEEEEC--SCCSSCEEEEEEETTEEEEEEE
T ss_pred ----CCCCEEEEEE--hhcCccEEEEEecCcCccccce
Confidence 1223455532 7899999999999998766544
No 358
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...
Probab=99.69 E-value=3.1e-16 Score=141.62 Aligned_cols=181 Identities=14% Similarity=0.177 Sum_probs=116.2
Q ss_pred CccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC--E--E-ec------------CCCCEEEEE-eCCEEEEEEcC
Q psy16852 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG--T--E-LH------------ATEHYLITT-VESVSTLEIIN 68 (579)
Q Consensus 7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g--~--~-~~------------~~~~~~~~~-~~~~~~L~i~~ 68 (579)
+.+...|.++.+.+|++++|.|.+. .+.+.+.|||+. . . +. ...++.... ......|+|.+
T Consensus 4 ~~v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~ 82 (252)
T 1oga_E 4 GGITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTS 82 (252)
T ss_dssp -CEECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECS
T ss_pred ccceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECc
Confidence 4567778899999999999999985 456799999953 1 1 10 123443322 12456899999
Q ss_pred CCCCCCEEEEEEEEcCC---eeeEEEEEEEEEecccCCCCCceec-CCCceEEccCCcEEEEEEEEee-cC-CeEEEEEC
Q psy16852 69 PTKEDIGVYTCKATNIG---GVATCSANLIVLEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGR-PT-PSICWYRG 142 (579)
Q Consensus 69 ~~~~d~G~Y~C~~~~~~---g~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~ 142 (579)
++.+|+|.|+|.+.+.. ........+.|........+|.+.. .+....+.+|+.++|.|.+.+. |. +.|.|+++
T Consensus 83 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~ 162 (252)
T 1oga_E 83 AQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN 162 (252)
T ss_dssp CCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred CChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEEC
Confidence 99999999999998851 1122234566654221123444432 2333344579999999999886 65 49999999
Q ss_pred CEEccCCCCce---EE-E-cCCCCe----EEEEECcCCCC-CCeEEEEEEEcCCce
Q psy16852 143 KEEILPDNGHT---ME-F-NPTTGE----CVLSISEATPQ-DEAVYSVKAVNTFGR 188 (579)
Q Consensus 143 ~~~~~~~~~~~---~~-~-~~~~~~----~~l~i~~~~~~-d~G~Y~C~~~~~~~~ 188 (579)
+..+....... .. . ...++. +.|.|...... |.|.|+|.+.|....
T Consensus 163 g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~ 218 (252)
T 1oga_E 163 GKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS 218 (252)
T ss_dssp TEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred CEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence 98875432110 00 0 011222 35777766654 678999999987543
No 359
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=99.68 E-value=7e-16 Score=116.87 Aligned_cols=94 Identities=28% Similarity=0.476 Sum_probs=86.6
Q ss_pred CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
.-||.|...|.++.+.+|+.++|.|.+.+.|.+.+.|+++|..+....++.+........|.|.+++.+|+|.|+|.|.|
T Consensus 4 ~~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 83 (99)
T 3puc_A 4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKN 83 (99)
T ss_dssp CEEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred CCCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEe
Confidence 35788999999999999999999999999999999999999999888888888887888999999999999999999999
Q ss_pred CCeeeEEEEEEEEE
Q psy16852 84 IGGVATCSANLIVL 97 (579)
Q Consensus 84 ~~g~~~~~~~~~v~ 97 (579)
..|.....+.|.|.
T Consensus 84 ~~g~~~~~~~l~V~ 97 (99)
T 3puc_A 84 SAGSVSSSCKLTIK 97 (99)
T ss_dssp TTEEEEEEEEEEEE
T ss_pred CCCcEeEEEEEEEE
Confidence 99998888888875
No 360
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.68 E-value=2.5e-17 Score=145.92 Aligned_cols=170 Identities=14% Similarity=0.108 Sum_probs=112.8
Q ss_pred CceEEccCCcEEEEEEEEe-ecCC----eEEEEECCEEccC-------------CCCceEEEc---CCCCeEEEEECcCC
Q psy16852 113 KPVIAEAQSPATLKATVTG-RPTP----SICWYRGKEEILP-------------DNGHTMEFN---PTTGECVLSISEAT 171 (579)
Q Consensus 113 ~~~~~~~g~~~~l~C~~~~-~p~~----~i~W~~~~~~~~~-------------~~~~~~~~~---~~~~~~~l~i~~~~ 171 (579)
..+.+.+|++++|.|.+.+ .+.+ .+.|++++..... ..+..+..+ ...+..+|.|.+++
T Consensus 7 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~ 86 (221)
T 3eow_R 7 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGLR 86 (221)
T ss_dssp CCCCCCCSSCCEEECCCCCCSSSCCCEEEEEECBSSSCSSCCCEEESSSEEECSCSSCEEESSCSSCCCCCCEEECCCSS
T ss_pred CcEEEEeCCCEEEEeeeccCCCCCccceEEEEEeCCCCceEEEEECCCCCCcCCCCcEEEecccCCCCCCCceEEEccCC
Confidence 3456778999999999843 3433 4999998642110 122222211 02245689999999
Q ss_pred CCCCeEEEEEEEcCC-ceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeE-EEEEEEE-ccCCCeEEEEEC
Q psy16852 172 PQDEAVYSVKAVNTF-GRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTV-TLEAEYT-GTPTPEVKWFKN 248 (579)
Q Consensus 172 ~~d~G~Y~C~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~-~l~C~~~-~~p~~~v~W~~~ 248 (579)
.+|+|.|+|.+.+.. +.......+.|. .+|.+........ ..|+.+ .|.|.+. +.|.+.+.|+++
T Consensus 87 ~~D~G~Y~C~~~~~~~~~~~~~~~L~V~-----------~~P~~~~~~~~~~-~~g~~~~~l~C~~~~g~P~p~v~W~k~ 154 (221)
T 3eow_R 87 VEDEGSYTCLFVTFPQGSRSVDIWLRVL-----------AKPQNTAEVQKVQ-LTGEPVPMARCVSTGGRPPAQITWHSD 154 (221)
T ss_dssp CCCCSCBEEEEEESSSCSCEEECCCCCC-----------CCCEEEEEEECCC-CCSSSCCEEEEEEESCSSCCCEEEECS
T ss_pred hHHCeEEEEEEEeCCCCceEEEEEEEEE-----------ECCCceeecCCcc-cCCceEEEEEEECCCccCCCeeEEEeC
Confidence 999999999999865 544444444332 4555543322222 578888 5999988 789999999987
Q ss_pred CEEeccCc------eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEE
Q psy16852 249 GKEIVSKD------IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSG 294 (579)
Q Consensus 249 ~~~i~~~~------~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~ 294 (579)
+....... .......+.|.|.++..+|.|.|+|.|.|..+.....+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~a~n~~~~~~~~~ 206 (221)
T 3eow_R 155 LGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLL 206 (221)
T ss_dssp SSCCCCCEEECCCCBTTBCCEEEEECCCCSCCCCCCEEEEECCSCSSSCEEE
T ss_pred CCCCCccceeecCCCCcEEEEEEEEEeCCHHHCCCeEEEEEECCCCCCCeEE
Confidence 43322111 11223457899999999999999999999887654443
No 361
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=99.68 E-value=2.1e-16 Score=118.00 Aligned_cols=90 Identities=21% Similarity=0.303 Sum_probs=79.3
Q ss_pred CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC--EEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG--TELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g--~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
+||.|...+.++.+.+|+.+.|.|.+.|.|.|.+.|+++| ..+.... ..........|.|.+++.+|+|.|+|.|.
T Consensus 1 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~--~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 78 (93)
T 1wit_A 1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPEL--LVDAKSSTTSIFFPSAKRADSGNYKLKVK 78 (93)
T ss_dssp CCCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTS--EEEEETTEEEEECTTBCGGGCEEEEEEEE
T ss_pred CCCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcE--EEEecCCEEEEEECCCChhcCEEEEEEEE
Confidence 5899998999999999999999999999999999999999 8776553 33445667899999999999999999999
Q ss_pred cCCeeeEEEEEEEE
Q psy16852 83 NIGGVATCSANLIV 96 (579)
Q Consensus 83 ~~~g~~~~~~~~~v 96 (579)
|..|....++.|.|
T Consensus 79 N~~G~~~~~~~l~V 92 (93)
T 1wit_A 79 NELGEDEAIFEVIV 92 (93)
T ss_dssp ETTEEEEEEEEEEE
T ss_pred cCCCeEEEEEEEEE
Confidence 99998888877776
No 362
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=99.68 E-value=4.9e-16 Score=119.64 Aligned_cols=95 Identities=32% Similarity=0.505 Sum_probs=86.4
Q ss_pred CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI 84 (579)
Q Consensus 5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 84 (579)
.||.|...|.++.+.+|+.++|.|.+.+.|.+.+.|+++|..+....++.+...+....|.|.+++.+|+|.|+|.|.|.
T Consensus 12 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 91 (107)
T 3irg_B 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNA 91 (107)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred CCCeeEcCCccEEEeCCCeEEEEEEEeecCCCEEEEEECCeECCCCCcEEEEeCCCEEEEEEccCCHHhCEEEEEEEEcC
Confidence 47899999999999999999999999999999999999999998888887777777789999999999999999999999
Q ss_pred CeeeEEEEEEEEEec
Q psy16852 85 GGVATCSANLIVLEK 99 (579)
Q Consensus 85 ~g~~~~~~~~~v~~~ 99 (579)
.|.....+.|.|.++
T Consensus 92 ~g~~~~~~~l~V~~~ 106 (107)
T 3irg_B 92 AGEAYAAAAVTVLEP 106 (107)
T ss_dssp TEEEEEEEEEEEEC-
T ss_pred CCcEEEEEEEEEEcC
Confidence 999888888888653
No 363
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=119.28 Aligned_cols=92 Identities=15% Similarity=0.257 Sum_probs=82.2
Q ss_pred CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
-.||.|...|.++.+.+|+.+.|.|.+ .|.+.++|||||..+..+.++.+...+....|.|.+++.+|+|.|+|.|.|
T Consensus 5 ~~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 82 (100)
T 2yuz_A 5 SSGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDA 82 (100)
T ss_dssp SCCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESS
T ss_pred CCCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcC
Confidence 358899999999999999999999999 788899999999999988888888877788999999999999999999998
Q ss_pred CCeeeEEEEEEEEEec
Q psy16852 84 IGGVATCSANLIVLEK 99 (579)
Q Consensus 84 ~~g~~~~~~~~~v~~~ 99 (579)
. ....++.|.|.++
T Consensus 83 ~--~~~~~a~L~V~~~ 96 (100)
T 2yuz_A 83 Y--NVTLPAKVHVISG 96 (100)
T ss_dssp S--CCCEEEEEEEECC
T ss_pred C--CeeEEEEEEEeCC
Confidence 7 4556778888754
No 364
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.68 E-value=4.3e-16 Score=141.58 Aligned_cols=180 Identities=18% Similarity=0.228 Sum_probs=107.2
Q ss_pred ceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECC--EE---ccCC--------------CCceEEEcCCCCeEEEEE
Q psy16852 107 KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGK--EE---ILPD--------------NGHTMEFNPTTGECVLSI 167 (579)
Q Consensus 107 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~~---~~~~--------------~~~~~~~~~~~~~~~l~i 167 (579)
.+...+..+.+.+|++++|.|.+.+.+.+.+.||+.. .. +... .+.....+...+..+|.|
T Consensus 4 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I 83 (259)
T 3omz_A 4 NLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMIL 83 (259)
T ss_dssp -------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEE
T ss_pred ccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEE
Confidence 4455566788999999999999988888999999821 11 1000 022222233345568999
Q ss_pred CcCCCCCCeEEEEEEEcCCce---eEEEEEEEEeeccccC------CCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc
Q psy16852 168 SEATPQDEAVYSVKAVNTFGR---AECRANLVLRKATTID------KPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT 238 (579)
Q Consensus 168 ~~~~~~d~G~Y~C~~~~~~~~---~~~~~~~~v~~~~~~~------~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~ 238 (579)
.+++.+|+|.|+|.+.+..+. ......+.|....... .......|.+...+....+.+|++++|.|.+.+.
T Consensus 84 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~ 163 (259)
T 3omz_A 84 RNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETS 163 (259)
T ss_dssp SSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEECC
T ss_pred CCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCCc
Confidence 999999999999999987652 2222344443211000 0001113556666677789999999999988874
Q ss_pred -CCCeEEEEECC--EEec-------------cCceEE----eCCeEEEEEcccCCCCCeEEEEEEEcC
Q psy16852 239 -PTPEVKWFKNG--KEIV-------------SKDIET----KDNVTKLVIKQTTKKTTGKYEIRVVNE 286 (579)
Q Consensus 239 -p~~~v~W~~~~--~~i~-------------~~~~~~----~~~~~~l~i~~~~~~d~G~y~C~a~n~ 286 (579)
+.+.+.|++.+ ..+. ...... ......|.|.+++.+|+|.|.|.+.+.
T Consensus 164 ~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 231 (259)
T 3omz_A 164 WWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGES 231 (259)
T ss_dssp CSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred cCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence 77799999843 1110 001111 123456999999999999999999753
No 365
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.68 E-value=2.3e-15 Score=136.59 Aligned_cols=199 Identities=14% Similarity=0.189 Sum_probs=110.2
Q ss_pred EEeccceeeeeeeeeecc--ccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCC
Q psy16852 298 ITVAEAETVMMDVRVESH--PTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPEN 375 (579)
Q Consensus 298 v~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 375 (579)
+.+.+|..+.|.|.+... +...+.|+... .+.....+.+..+........++.... ....++|.|.+++.+|
T Consensus 12 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~-----~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D 85 (256)
T 3ux9_B 12 VSGAPGQRVTISCSGSSSNIGSNYVSWYQQL-----PGTAPKLLIYDNNQRPSGVPDRFSGSK-SGTSASLAITGLQSED 85 (256)
T ss_dssp EEECTTCCEEEEEECCTTTTTTSCCEEEEEC-----TTSCCEEEEBTTTBCCTTCCTTEEEEE-ETTEEEEEECSCCGGG
T ss_pred EEEcCCCcEEEEEecCCCCCCCceEEEEEEC-----CCCCCEEEEEecCCCCCCcCCcEEEEc-cCCEEEEEECCCChhh
Confidence 557788999999987654 34445554211 011111111111111111223454433 2356789999999999
Q ss_pred CEEEEEEEEcCce---eEEEEEEEEEEecccCCC---------------CCeeecCCCceeeecCCCeEEEEEEEeeC--
Q psy16852 376 AGLYSCTAVNPVG---EAVAAATLAVEEKEESGE---------------APKFTKPLKPVIAEAQSPATLKATVTGRP-- 435 (579)
Q Consensus 376 ~G~Y~C~a~n~~g---~~~~~~~l~v~~~~~~~~---------------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p-- 435 (579)
+|.|+|.+.|..+ .......|.|...+.... .+.+.. +....+.+|+.++|.|.+.+.|
T Consensus 86 sG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~~~~~~ 164 (256)
T 3ux9_B 86 EADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVE-SGGGLVQPGGSLRLSCAASGFTFS 164 (256)
T ss_dssp CEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEE-ECCEEECTTCCEEEEEEEESSCGG
T ss_pred CEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEc-CCCeEEcCCCeEEEEEEEeCCccc
Confidence 9999999998653 223445677765321100 123333 3345688999999999999877
Q ss_pred CCeEEEeeCC--EEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee--CCeeEEEEeecccccce
Q psy16852 436 TPSICWYRGK--EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD--GNRSVLLISKITRDQIG 511 (579)
Q Consensus 436 ~~~v~W~~~~--~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G 511 (579)
.+.+.|++++ ..+ ...+. +.. .+...+.-.....++.+..+ .....|+|.+++.+|+|
T Consensus 165 ~~~v~W~r~~~~~~~----~~~~~-----------~~~---~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG 226 (256)
T 3ux9_B 165 SYAMSWVRQAPGKGL----EWVSA-----------ISG---SGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTA 226 (256)
T ss_dssp GSEEEEEEECTTCCE----EEEEE-----------ECS---SSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred ccEEEEEEECCCCCc----EEEEE-----------Ecc---CCCceecCccccceEEEEecCCCCEEEEEECCCChhhCE
Confidence 6799999862 111 00000 000 00000000011112223322 34667999999999999
Q ss_pred eEEEEEEeCC
Q psy16852 512 DVTCRAENVA 521 (579)
Q Consensus 512 ~Y~C~a~n~~ 521 (579)
.|+|.|.|..
T Consensus 227 ~Y~C~~~~~~ 236 (256)
T 3ux9_B 227 VYYCARYIDF 236 (256)
T ss_dssp EEEEEEEETT
T ss_pred EEEEEEEcCC
Confidence 9999999963
No 366
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=99.67 E-value=1.2e-15 Score=115.47 Aligned_cols=94 Identities=24% Similarity=0.409 Sum_probs=79.5
Q ss_pred CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS 485 (579)
Q Consensus 406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 485 (579)
.+|.+...+....+.+|+.++|.|.+.|.|.|.+.|+++|..+....++.+..
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~--------------------------- 56 (99)
T 1g1c_A 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYW--------------------------- 56 (99)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEE---------------------------
T ss_pred CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEE---------------------------
Confidence 46778777888899999999999999999999999999999987665544321
Q ss_pred cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
..+..+.|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 57 -------~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~ 97 (99)
T 1g1c_A 57 -------PEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQ 97 (99)
T ss_dssp -------EETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred -------cCCCEEEEEECCCCcCCCEEEEEEEEECCCcEEEEEEEEEe
Confidence 12345569999999999999999999999999999999885
No 367
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=99.67 E-value=5.4e-16 Score=114.76 Aligned_cols=89 Identities=20% Similarity=0.156 Sum_probs=78.3
Q ss_pred CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
..||.|+..|.++.+.+|+.++|.|.+.+ +.+.++|||||..+..+.++.+...+....|.|.+++.+|+|.|+|.|.|
T Consensus 3 ~~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n 81 (93)
T 1waa_A 3 MALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAN 81 (93)
T ss_dssp CCCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETT
T ss_pred CCCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECC
Confidence 46899999999999999999999999975 45789999999999988888888888888999999999999999999976
Q ss_pred CCeeeEEEEEEEEE
Q psy16852 84 IGGVATCSANLIVL 97 (579)
Q Consensus 84 ~~g~~~~~~~~~v~ 97 (579)
. ..++.|.|.
T Consensus 82 ~----~~sa~L~V~ 91 (93)
T 1waa_A 82 T----KSAANLKVK 91 (93)
T ss_dssp E----EEEEEEEEE
T ss_pred C----cEEEEEEEE
Confidence 3 456677775
No 368
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.67 E-value=7.6e-16 Score=142.18 Aligned_cols=176 Identities=12% Similarity=0.152 Sum_probs=114.1
Q ss_pred CCceEEccCCcEEEEEEEEeec--CCeEEEEECC--EE---cc--------------CCCCceEEEcCCCCeEEEEECcC
Q psy16852 112 LKPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EE---IL--------------PDNGHTMEFNPTTGECVLSISEA 170 (579)
Q Consensus 112 ~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~---~~--------------~~~~~~~~~~~~~~~~~l~i~~~ 170 (579)
+..+.+.+|++++|.|.+.+.+ .+.+.||++. .. +. ...+..+..+...+..+|.|.++
T Consensus 29 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 108 (291)
T 2gki_A 29 SGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSL 108 (291)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSC
T ss_pred CCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcC
Confidence 3467889999999999998766 5799999953 11 10 01333444333345678999999
Q ss_pred CCCCCeEEEEEEEcCC-c--eeE--EEEEEEEeecc----c-cCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCC
Q psy16852 171 TPQDEAVYSVKAVNTF-G--RAE--CRANLVLRKAT----T-IDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPT 240 (579)
Q Consensus 171 ~~~d~G~Y~C~~~~~~-~--~~~--~~~~~~v~~~~----~-~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~ 240 (579)
+.+|+|.|+|.+.+.. + ... ....+.|.... . ...+....++.+...+....+.+|++++|.|.+.+.+.
T Consensus 109 ~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~ 188 (291)
T 2gki_A 109 TSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSLF 188 (291)
T ss_dssp CGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCCE
T ss_pred CHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCccc
Confidence 9999999999999874 1 111 12244443200 0 00000112334444555667899999999999988776
Q ss_pred C------eEEEEECC--E---Eec----------cCce--EEeCCeEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852 241 P------EVKWFKNG--K---EIV----------SKDI--ETKDNVTKLVIKQTTKKTTGKYEIRVVNEA 287 (579)
Q Consensus 241 ~------~v~W~~~~--~---~i~----------~~~~--~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~ 287 (579)
+ .+.|++++ . .+. .... ........|.|.+++.+|+|.|+|.|.|..
T Consensus 189 ~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~ 258 (291)
T 2gki_A 189 NSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYH 258 (291)
T ss_dssp ETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred cccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence 5 89999952 2 111 1111 123445689999999999999999998854
No 369
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.67 E-value=1.2e-15 Score=138.55 Aligned_cols=179 Identities=12% Similarity=0.167 Sum_probs=114.4
Q ss_pred CCceecCCCceEEccCCcEEEEEEEEeec------CCeEEEEECC--EE---cc---------CCCCceEEEcCCCCeEE
Q psy16852 105 APKFTKPLKPVIAEAQSPATLKATVTGRP------TPSICWYRGK--EE---IL---------PDNGHTMEFNPTTGECV 164 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p------~~~i~W~~~~--~~---~~---------~~~~~~~~~~~~~~~~~ 164 (579)
.+.+...+..+.+.+|+.++|.|.+.+.+ .+.+.||++. .. +. ...++... ...+...
T Consensus 5 ~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~--~~~~~~~ 82 (264)
T 2gjj_A 5 DIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGS--GSGTDFT 82 (264)
T ss_dssp CCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE--EETTEEE
T ss_pred ccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEe--cCCCEEE
Confidence 34555566778899999999999998776 5799999852 21 11 01233322 2345679
Q ss_pred EEECcCCCCCCeEEEEEEEcCCcee-EEEEEEEEeecccc-----CCC---Cc-cCCCeEeccCCceeeCCCCeEEEEEE
Q psy16852 165 LSISEATPQDEAVYSVKAVNTFGRA-ECRANLVLRKATTI-----DKP---RV-LEAPTIVRPLQALLVPKDSTVTLEAE 234 (579)
Q Consensus 165 l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~~v~~~~~~-----~~~---~~-~~~p~~~~~~~~~~~~~g~~~~l~C~ 234 (579)
|.|.+++.+|+|.|+|.+.+..+.. .....+.|...... ... .. ...+.+.. +....+.+|++++|.|.
T Consensus 83 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~ 161 (264)
T 2gjj_A 83 LTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQ-SGPEVVKTGASVKISCK 161 (264)
T ss_dssp EEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEE-CCCEEECTTCCEEEEEE
T ss_pred EEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeC-CCCEEEcCCCcEEEEEE
Confidence 9999999999999999998875421 11234444321000 000 00 01112222 23346889999999999
Q ss_pred EEccCC--CeEEEEECC--E---Eec---------------cCceEE----eCCeEEEEEcccCCCCCeEEEEEEEcC
Q psy16852 235 YTGTPT--PEVKWFKNG--K---EIV---------------SKDIET----KDNVTKLVIKQTTKKTTGKYEIRVVNE 286 (579)
Q Consensus 235 ~~~~p~--~~v~W~~~~--~---~i~---------------~~~~~~----~~~~~~l~i~~~~~~d~G~y~C~a~n~ 286 (579)
+.+.+. +.+.|+++. . .+. ...... ......|.|.+++.+|+|.|.|.|.|.
T Consensus 162 ~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 162 ASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN 239 (264)
T ss_dssp EESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred EeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence 998764 699999963 2 121 011111 134578999999999999999999985
No 370
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.67 E-value=5e-16 Score=159.03 Aligned_cols=174 Identities=14% Similarity=0.292 Sum_probs=121.6
Q ss_pred EEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccC------------CCeEEEEECCCCeEE
Q psy16852 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKE------------GKEVTIYQDTDGLCK 365 (579)
Q Consensus 298 v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~------------~~~~~~~~~~~~~~~ 365 (579)
+.+..|..+.|.|... .+.|.+.+.|++++..+.. ..+... ..++ +
T Consensus 376 ~~~~~G~~v~L~C~~~------------------~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~--~ 433 (581)
T 3o3u_N 376 ITARIGEPLVLKCKGA------------------PKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARV--LPNG--S 433 (581)
T ss_dssp EEEETTSCEEECCTTC------------------CSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEE--CTTS--C
T ss_pred cceecCCcEEEeeeec------------------CCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEE--cCCc--e
Confidence 4466788888888641 3456678888887653211 112221 1222 7
Q ss_pred EEEcccCCCCCEEEEEEEEcCceeE-EEEEEEEEEecccCCCCCeeecCCCceeeecCCCe-EEEEEEEe-eCCCeEEEe
Q psy16852 366 LAISEVFPENAGLYSCTAVNPVGEA-VAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPA-TLKATVTG-RPTPSICWY 442 (579)
Q Consensus 366 l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~-~l~C~~~g-~p~~~v~W~ 442 (579)
|.|.+++.+|+|.|+|.+.|..|.. ...+.|.|...+ ..|.+..... .+..|+.. .|.|.+.+ +|.|+++|+
T Consensus 434 L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~---~~p~i~~~~~--~~~~~~~~~~l~C~~~~~~P~~~i~W~ 508 (581)
T 3o3u_N 434 LFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIP---GKPEIVDSAS--ELTAGVPNKVGTCVSEGSYPAGTLSWH 508 (581)
T ss_dssp EEESSCCGGGCEEEEEEEECTTSCEEEEEEEEEEEBCC---CCCEEESCCS--EECTTSCEEEEEEEEEEEBSCCEEEEE
T ss_pred EEEeccccccCeEEEEEEEcCCCceeEEEEEEEEEcCC---CCCEEEcCCc--ccccCCceeEEEEECCCCCCCCeEEEE
Confidence 9999999999999999999999877 677888887643 2455553333 24455554 66999998 599999999
Q ss_pred eCCEEcCCCCCeeEEEcCCCCeEEEEEcccc-CCCceeEEEEeecceeeeeeeCCeeEEEEeecc-cccceeEEEEEEeC
Q psy16852 443 RGKEEILPDNGHTMEFNPTTGECVLSISEAT-PQDEAVYSVKASSTETKIMTDGNRSVLLISKIT-RDQIGDVTCRAENV 520 (579)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~ 520 (579)
++|..+....+.. +...... ..++|.|+|... |.|..++ .++.|.|+|.|+|.
T Consensus 509 ~~g~~l~~~~~~~-----------~~~~~~~~~~~~g~y~~~s~--------------L~i~~~~~~d~~~~y~C~~~n~ 563 (581)
T 3o3u_N 509 LDGKPLVPNEKGV-----------SVKEQTRRHPETGLFTLQSE--------------LMVTPARGGDPRPTFSCSFSPG 563 (581)
T ss_dssp ETTEECCTTSTTE-----------EEEEEEEECTTTCCEEEEEE--------------EEECCCTTSCSCCCEEEEEECS
T ss_pred ECCEECCCCCCeE-----------EEEeeeEEcCCCceEEEEEE--------------EEEEeccccCCCceEEEEEecc
Confidence 9999986533211 1122222 348999999866 9999998 55589999999999
Q ss_pred Cee
Q psy16852 521 AGS 523 (579)
Q Consensus 521 ~g~ 523 (579)
.+.
T Consensus 564 ~~~ 566 (581)
T 3o3u_N 564 LPR 566 (581)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 371
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...
Probab=99.67 E-value=1.1e-15 Score=136.18 Aligned_cols=180 Identities=15% Similarity=0.201 Sum_probs=111.9
Q ss_pred cccCceeeeCCCCEEEEEEEEeeC--CCee--EEEECC-----EEe-----c-----------CCCCEEEEEe--CCEEE
Q psy16852 11 EKIQPVVSHQEQPALFTCKVEGHP--LPTM--TWQKDG-----TEL-----H-----------ATEHYLITTV--ESVST 63 (579)
Q Consensus 11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v--~W~~~g-----~~~-----~-----------~~~~~~~~~~--~~~~~ 63 (579)
..|..+.+.+|++++|.|.+.+.+ ...+ .|||.. ..+ . ...++.+... .+..+
T Consensus 5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s 84 (232)
T 3qhz_H 5 RESGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVV 84 (232)
T ss_dssp EEECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEE
T ss_pred EcCCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEE
Confidence 456778899999999999997642 2345 999832 111 0 1135555543 35678
Q ss_pred EEEcCCCCCCCEEEEEEEEcCC--------eeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecC-
Q psy16852 64 LEIINPTKEDIGVYTCKATNIG--------GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT- 134 (579)
Q Consensus 64 L~i~~~~~~d~G~Y~C~~~~~~--------g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~- 134 (579)
|+|.+++.+|+|.|+|.+.+.. ........+.|... ...+|.+........+..|+.++|.|.+.+.++
T Consensus 85 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~--~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~ 162 (232)
T 3qhz_H 85 LTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSA--STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE 162 (232)
T ss_dssp EEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSS--CCBCCEEEEECC-------CEEEEEEEEEEEBSS
T ss_pred EEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecC--CCCCCEEEEecccccccCCCcEEEEEEEeeEeCC
Confidence 9999999999999999998753 12223345666532 123444443233334557999999999987554
Q ss_pred -CeEEEEECCEEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy16852 135 -PSICWYRGKEEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAECRANL 195 (579)
Q Consensus 135 -~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~ 195 (579)
..+.|++++..+........ .. .++ .+.|.|......| |.|+|.+.|..+.......+
T Consensus 163 ~~~v~W~~~g~~~~~~~~~~~-~~-~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l 225 (232)
T 3qhz_H 163 PVTVSWNSGALTSGVHTFPAV-LQ-SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRV 225 (232)
T ss_dssp CCEEEEGGGTBCTTEEECCCE-EC-TTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEEC
T ss_pred CeEEEEEECCEecceeeccce-eC-CCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEe
Confidence 46889998764321100001 11 111 2468899988888 99999999987765554443
No 372
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.67 E-value=8.8e-16 Score=119.55 Aligned_cols=98 Identities=28% Similarity=0.422 Sum_probs=85.8
Q ss_pred cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecC-CCCEEEEEeC-CEEEEEEcCCCCCCCEEEEEE
Q psy16852 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA-TEHYLITTVE-SVSTLEIINPTKEDIGVYTCK 80 (579)
Q Consensus 3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~-~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~ 80 (579)
...+|.|+..|.++.+.+|+.++|.|.+.|.|.+.+.|+++|..+.. ..++.+.... +..+|.|.+++.+|+|.|+|.
T Consensus 12 ~~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 91 (116)
T 2kkq_A 12 HKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVS 91 (116)
T ss_dssp CCBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEE
T ss_pred CCCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEE
Confidence 45789999999999999999999999999999999999999999874 4566655444 355899999999999999999
Q ss_pred EEcCCeeeEEEEEEEEEecc
Q psy16852 81 ATNIGGVATCSANLIVLEKE 100 (579)
Q Consensus 81 ~~~~~g~~~~~~~~~v~~~~ 100 (579)
|.|..|.....+.|.|...+
T Consensus 92 a~N~~G~~~~~~~l~V~~~p 111 (116)
T 2kkq_A 92 AVNEAGVTTCNTRLDVTARP 111 (116)
T ss_dssp EEETTEEEEEEEEEEEECCS
T ss_pred EEcCCCeEEEEEEEEEeCCC
Confidence 99999999888999998654
No 373
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=99.67 E-value=1.8e-15 Score=115.46 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=80.1
Q ss_pred CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS 485 (579)
Q Consensus 406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 485 (579)
.+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+..
T Consensus 7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~--------------------------- 59 (103)
T 3qp3_A 7 HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTN--------------------------- 59 (103)
T ss_dssp EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEE---------------------------
T ss_pred CCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEE---------------------------
Confidence 36778877888899999999999999999999999999999987766554422
Q ss_pred cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
++....|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 60 --------~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 99 (103)
T 3qp3_A 60 --------TSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99 (103)
T ss_dssp --------ETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred --------CCCEEEEEEcCCCcccCEEEEEEEEeCCCcEEEEEEEEEE
Confidence 3345569999999999999999999999999999999986
No 374
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.66 E-value=9.2e-16 Score=119.43 Aligned_cols=93 Identities=22% Similarity=0.249 Sum_probs=80.0
Q ss_pred CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS 485 (579)
Q Consensus 406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 485 (579)
.+|.|...+....+.+|+.++|.|.+.|.|.|.+.|+|++..+..+.++.+..
T Consensus 6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~--------------------------- 58 (114)
T 2cqv_A 6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVEN--------------------------- 58 (114)
T ss_dssp CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEE---------------------------
T ss_pred CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEE---------------------------
Confidence 58888888888999999999999999999999999999998887665554432
Q ss_pred cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
....+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus 59 --------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~ 98 (114)
T 2cqv_A 59 --------SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV 98 (114)
T ss_dssp --------CSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEE
T ss_pred --------cCCEEEEEECCCChhcCEEEEEEEEECCCcEEEEEEEEEE
Confidence 2334569999999999999999999999999999999986
No 375
>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...
Probab=99.66 E-value=1.4e-15 Score=135.98 Aligned_cols=180 Identities=13% Similarity=0.195 Sum_probs=114.2
Q ss_pred cccCceeeeCCCCEEEEEEEEeeCC----CeeEEEECC--E---Ee---c----------------CCCCEEEEEe--CC
Q psy16852 11 EKIQPVVSHQEQPALFTCKVEGHPL----PTMTWQKDG--T---EL---H----------------ATEHYLITTV--ES 60 (579)
Q Consensus 11 ~~p~~~~v~~G~~~~l~C~~~~~~~----~~v~W~~~g--~---~~---~----------------~~~~~~~~~~--~~ 60 (579)
.+|..+.+.+|++++|.|.+.+.+. ..+.|||.. . .+ . ...++.+... ..
T Consensus 5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~ 84 (239)
T 3tv3_H 5 QESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKN 84 (239)
T ss_dssp EEESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGT
T ss_pred ecCCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCC
Confidence 4577899999999999999987653 389999832 1 11 1 1134444432 45
Q ss_pred EEEEEEcCCCCCCCEEEEEEEEcCCe-------------eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEE
Q psy16852 61 VSTLEIINPTKEDIGVYTCKATNIGG-------------VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKA 127 (579)
Q Consensus 61 ~~~L~i~~~~~~d~G~Y~C~~~~~~g-------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C 127 (579)
...|+|.+++.+|+|.|+|.+.+..+ .......+.|... ...+|.+........+..|+.++|.|
T Consensus 85 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~--~~~~P~v~~~~~~~~~~~g~~v~l~C 162 (239)
T 3tv3_H 85 LVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSA--STKGPSVFPLAPSSKSTSGGTAALGC 162 (239)
T ss_dssp EEEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCC--CCBCCEEEEECCCCCC--TTEEEEEE
T ss_pred EEEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccC--CCcCCEEEEECCChhhccCCcEEEEE
Confidence 67899999999999999999976421 1112345555432 12344444333333445799999999
Q ss_pred EEEee-cC-CeEEEEECCEEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy16852 128 TVTGR-PT-PSICWYRGKEEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAECRANL 195 (579)
Q Consensus 128 ~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~ 195 (579)
.+.+. |. ..+.|++++..+........ .. .++ .+.|.|......| |.|+|.+.|..+.......+
T Consensus 163 ~~~~~~p~~~~v~W~~~g~~~~~~~~~~~-~~-~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l 233 (239)
T 3tv3_H 163 LVKDYFPEPVTVSWNSGALTSGVHTFPAV-LQ-SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRV 233 (239)
T ss_dssp EEEEEBSSCCEEEEGGGTBCTTEEECCCE-EC-TTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEEC
T ss_pred EEeeEeCCCeEEEEEECCccCceEecCce-EC-CCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEe
Confidence 99874 43 36889998764321111011 11 111 2468899988888 99999999987665544443
No 376
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.66 E-value=6.9e-16 Score=137.08 Aligned_cols=177 Identities=18% Similarity=0.197 Sum_probs=113.0
Q ss_pred cccccCceeeeCCCCEEEEEEEEee--CCCeeEEEECC--E---Eec-------------CCCCEEEEEeC--CEEEEEE
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEGH--PLPTMTWQKDG--T---ELH-------------ATEHYLITTVE--SVSTLEI 66 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~~--~~~~v~W~~~g--~---~~~-------------~~~~~~~~~~~--~~~~L~i 66 (579)
+...|..+.+.+|++++|.|.+.+. +...+.|||.. . .+. ...++.+.... +..+|+|
T Consensus 4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (230)
T 1ypz_F 4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI 83 (230)
T ss_dssp EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred ccccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEE
Confidence 5567888999999999999999764 45689999842 1 110 12334443322 5679999
Q ss_pred cCCCCCCCEEEEEEEEcC--Ce--eeEEEEEEEEEeccc-----CCCCCceecCCCceEEccCCcEEEEEEEEee-cC-C
Q psy16852 67 INPTKEDIGVYTCKATNI--GG--VATCSANLIVLEKEE-----SGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT-P 135 (579)
Q Consensus 67 ~~~~~~d~G~Y~C~~~~~--~g--~~~~~~~~~v~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~ 135 (579)
.+++.+|+|.|.|.+.+. .. .....+.|.|..... .+..+.+.. +....+.+|+.++|.|.+.++ |. +
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~-p~~~~v~~g~~~~L~C~~~g~~P~~~ 162 (230)
T 1ypz_F 84 YSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFL-PSVAETNLHKTGTYLCLLEAFFPDVI 162 (230)
T ss_dssp CSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEEC-CCHHHHHHHSCEEEEEEEEEESSCCC
T ss_pred CcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEEC-CCchhhccCCcceEEEEEeeecCCCe
Confidence 999999999999999874 11 112345677762110 001122221 333345578999999999887 65 6
Q ss_pred eEEEEE-CCEEccCCCC-ceEEEcCC-CCeEEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852 136 SICWYR-GKEEILPDNG-HTMEFNPT-TGECVLSISEATPQDEAVYSVKAVNTFGR 188 (579)
Q Consensus 136 ~i~W~~-~~~~~~~~~~-~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 188 (579)
.|.|++ ++..+..... .....+.. ...+.|.|..... + |.|+|.+.|..+.
T Consensus 163 ~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~ 216 (230)
T 1ypz_F 163 RVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNK 216 (230)
T ss_dssp EEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCT
T ss_pred EEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCC
Confidence 999999 7665543211 11111100 0124688888776 4 9999999998654
No 377
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=99.66 E-value=8.7e-16 Score=116.28 Aligned_cols=94 Identities=24% Similarity=0.494 Sum_probs=81.5
Q ss_pred CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCC-EEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEH-YLITTVESVSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
.||.|...|.+..+.+|+.++|.|.+.+.|.+.+.|+++|..+..... +.........+|.|.+++.+|+|.|+|.|.|
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N 83 (99)
T 1u2h_A 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVN 83 (99)
T ss_dssp EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEE
Confidence 588999999999999999999999999999999999999999876544 3333344556899999999999999999999
Q ss_pred CCeeeEEEEEEEEEe
Q psy16852 84 IGGVATCSANLIVLE 98 (579)
Q Consensus 84 ~~g~~~~~~~~~v~~ 98 (579)
..|.....+.|.|.+
T Consensus 84 ~~g~~~~~~~l~V~~ 98 (99)
T 1u2h_A 84 EYGARQCEARLEVRG 98 (99)
T ss_dssp TTEEEEEEEEEEEEC
T ss_pred CCCceeEEEEEEEEC
Confidence 999988888888863
No 378
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=99.66 E-value=9.8e-16 Score=135.50 Aligned_cols=168 Identities=14% Similarity=0.219 Sum_probs=111.8
Q ss_pred CceEEccCCcEEEEEEEEeec--CCeEEEEECCE--E---c---c-------------CCCCceEEEcCCCCeEEEEECc
Q psy16852 113 KPVIAEAQSPATLKATVTGRP--TPSICWYRGKE--E---I---L-------------PDNGHTMEFNPTTGECVLSISE 169 (579)
Q Consensus 113 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~~--~---~---~-------------~~~~~~~~~~~~~~~~~l~i~~ 169 (579)
..+.+.+|++++|.|.+.+.+ .+.+.||+... . + . ...+..+..+...+..+|.|.+
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 87 (221)
T 3m8o_H 8 GGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNS 87 (221)
T ss_dssp SCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECS
T ss_pred CCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECC
Confidence 346788999999999998643 57999998421 0 1 0 1133444444445677899999
Q ss_pred CCCCCCeEEEEEEEcCCc--eeEEEEEEEEeeccccCCCCccCCCeEe-ccCCceeeCCCCeEEEEEEEEc-cCC-C-eE
Q psy16852 170 ATPQDEAVYSVKAVNTFG--RAECRANLVLRKATTIDKPRVLEAPTIV-RPLQALLVPKDSTVTLEAEYTG-TPT-P-EV 243 (579)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~-~p~-~-~v 243 (579)
++.+|+|.|+|.+.+... .......+.+... ...+|.+. ..+... .+|+.++|.|.+.+ .|. + .+
T Consensus 88 v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~-------~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v 158 (221)
T 3m8o_H 88 LKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSA-------SPTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSV 158 (221)
T ss_dssp CCGGGCEEEEEEEESCTTCCCBBCCEEEEECSC-------CCBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEE
T ss_pred CCHHHCEEEEEEEECCChhheECCCEEEEEecC-------CCCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEE
Confidence 999999999999988631 1122234444311 11344444 222222 68999999999998 676 4 89
Q ss_pred EEEECCEEeccCc---e-----EEeCCeEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852 244 KWFKNGKEIVSKD---I-----ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGE 289 (579)
Q Consensus 244 ~W~~~~~~i~~~~---~-----~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~ 289 (579)
.|+++|..+.... . ......+.|.|.....+|.|.|+|.|.|..+.
T Consensus 159 ~W~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~ 212 (221)
T 3m8o_H 159 TWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNP 212 (221)
T ss_dssp EESCCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSC
T ss_pred EEEECCEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCC
Confidence 9999987653111 0 01112346899999999999999999998764
No 379
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=99.65 E-value=2.8e-15 Score=137.67 Aligned_cols=200 Identities=18% Similarity=0.263 Sum_probs=117.9
Q ss_pred EEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECC-E-Ecc---CCCeEEEEECCCCeEEEEEccc
Q psy16852 297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDG-T-PMK---EGKEVTIYQDTDGLCKLAISEV 371 (579)
Q Consensus 297 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~-~-~~~---~~~~~~~~~~~~~~~~l~i~~~ 371 (579)
.+.+..|..+.|.|.+...+...+.|+... .+.....+.....+ . ... ...++.+..+..+..+|.|.++
T Consensus 33 ~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v 107 (279)
T 2wbj_D 33 WVISKSGTSVKIECRSLDFQATTMFWYRQF-----PKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSA 107 (279)
T ss_dssp EEEEETTSCEEEEEEESSSCEEEEEEEEEC-----SSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSC
T ss_pred eEEecCCCeEEEEEEeCCCCCCeEEEEEeC-----CCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccC
Confidence 456778889999988644333344443211 00000011111110 0 000 1345666555556779999999
Q ss_pred CCCCCEEEEEEEEcCce------eEEEEEEEEEEecccCCCCCeeec-CCCceeeecCCCeEEEEEEEee-CC-CeEEEe
Q psy16852 372 FPENAGLYSCTAVNPVG------EAVAAATLAVEEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGR-PT-PSICWY 442 (579)
Q Consensus 372 ~~~d~G~Y~C~a~n~~g------~~~~~~~l~v~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~-p~-~~v~W~ 442 (579)
+.+|+|.|+|.+.|..+ .....+.|.|........+|.+.. .+....+..|+.++|.|.+.|. |. +.|.|+
T Consensus 108 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~ 187 (279)
T 2wbj_D 108 HPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW 187 (279)
T ss_dssp CGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEEEEE
T ss_pred CccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEEEEE
Confidence 99999999999998421 112335677765332234666653 2333445679999999999987 43 699999
Q ss_pred eCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeeccccc-ceeEEEEEEeCC
Q psy16852 443 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQ-IGDVTCRAENVA 521 (579)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~ 521 (579)
++|..+..+..... ..+........|.|... +.|.|.....+| .|.|+|.|.|..
T Consensus 188 k~g~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~--------------s~L~i~~~~~~d~~~~YtC~v~n~~ 243 (279)
T 2wbj_D 188 VNGKEVHSGVSTDP----------QPLKEQPALNDSRYSLS--------------SRLRVSATFWQNPRNHFRCQVQFYG 243 (279)
T ss_dssp ETTEECCTTEEECS----------SCEESSTTSTTCCEEEE--------------EEEECCSTTTTCTTCEEEEEEEECC
T ss_pred ECCEECCCCccccc----------ccccccccCCCCcEEEE--------------EEEEEChHHhccCCCEEEEEEEeCC
Confidence 99998854321000 00111222344555443 338888887764 678999999987
Q ss_pred eeEE
Q psy16852 522 GSVT 525 (579)
Q Consensus 522 g~~~ 525 (579)
....
T Consensus 244 ~~~~ 247 (279)
T 2wbj_D 244 LSEN 247 (279)
T ss_dssp BCTT
T ss_pred CCCC
Confidence 6543
No 380
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.65 E-value=3.9e-16 Score=114.56 Aligned_cols=79 Identities=16% Similarity=0.357 Sum_probs=69.5
Q ss_pred CCCccccccCceee--eCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 5 LAPRFIEKIQPVVS--HQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 5 ~~p~~~~~p~~~~v--~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
+||.|+.+++++.+ .+|+.++|.|.+.+ |.+.++|+|||+.+..+.++.+...+...+|.|.+++.+|+|.|+|.|.
T Consensus 3 ~P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 81 (91)
T 2lvc_A 3 MPVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAG 81 (91)
T ss_dssp CCCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECS
T ss_pred CCcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEc
Confidence 68888887777544 68999999999965 7789999999999999889988888888999999999999999999996
Q ss_pred cC
Q psy16852 83 NI 84 (579)
Q Consensus 83 ~~ 84 (579)
|.
T Consensus 82 n~ 83 (91)
T 2lvc_A 82 DE 83 (91)
T ss_dssp SC
T ss_pred ce
Confidence 53
No 381
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=99.65 E-value=9.6e-16 Score=138.56 Aligned_cols=170 Identities=15% Similarity=0.188 Sum_probs=111.7
Q ss_pred CCceEEccCCcEEEEEEEEeec--CCeEEEEECC--EE---c---c-----------CCCCceEEEcCCCCeEEEEECcC
Q psy16852 112 LKPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EE---I---L-----------PDNGHTMEFNPTTGECVLSISEA 170 (579)
Q Consensus 112 ~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~---~---~-----------~~~~~~~~~~~~~~~~~l~i~~~ 170 (579)
+..+.+.+|++++|.|.+.+.+ .+.+.||++. .. + . ...+..+..+...+..+|.|.++
T Consensus 13 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 92 (261)
T 2xqy_G 13 PGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSL 92 (261)
T ss_dssp CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred CCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCC
Confidence 4567789999999999998766 5899999863 11 1 0 01233333333345679999999
Q ss_pred CCCCCeEEEEEEEcCCcee-E--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCC-eEEE
Q psy16852 171 TPQDEAVYSVKAVNTFGRA-E--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTP-EVKW 245 (579)
Q Consensus 171 ~~~d~G~Y~C~~~~~~~~~-~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W 245 (579)
+.+|+|.|+|.+.+..+.. . ....+.|... ...+|.+........+..|+.++|.|.+.+. |.+ .+.|
T Consensus 93 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~-------~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W 165 (261)
T 2xqy_G 93 TSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSA-------KTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTW 165 (261)
T ss_dssp CGGGCEEEEEEEECTTSSEEEECCCEEEEECSS-------CCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEE
T ss_pred CcccCeEEEEEEecCCCcceEECCCEEEEEccC-------CCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEE
Confidence 9999999999999864311 1 1234444321 1124444432222235679999999999874 776 9999
Q ss_pred EECCEEeccC---ce---EEeCCeEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852 246 FKNGKEIVSK---DI---ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGE 289 (579)
Q Consensus 246 ~~~~~~i~~~---~~---~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~ 289 (579)
++++..+... .. ......+.|.|.....+| |.|+|.|.|....
T Consensus 166 ~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~ 214 (261)
T 2xqy_G 166 NSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS 214 (261)
T ss_dssp GGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred ecCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCC
Confidence 9988754211 11 111224678998888878 9999999997654
No 382
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.65 E-value=2.2e-15 Score=135.10 Aligned_cols=184 Identities=17% Similarity=0.217 Sum_probs=113.9
Q ss_pred eecCCCceEEccCCcEEEEEEEEee--cCCeEEEEECC--E---Ecc--------------CCCCceEEEcCCCCeEEEE
Q psy16852 108 FTKPLKPVIAEAQSPATLKATVTGR--PTPSICWYRGK--E---EIL--------------PDNGHTMEFNPTTGECVLS 166 (579)
Q Consensus 108 ~~~~~~~~~~~~g~~~~l~C~~~~~--p~~~i~W~~~~--~---~~~--------------~~~~~~~~~~~~~~~~~l~ 166 (579)
+...+..+.+.+|++++|.|.+.+. +.+.+.||+.. . .+. ...++.+..+...+..+|.
T Consensus 4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 83 (242)
T 1hxm_B 4 LEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLT 83 (242)
T ss_dssp EECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEE
T ss_pred cCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEE
Confidence 3445567788999999999999875 56899999843 1 111 1233333333333678999
Q ss_pred ECcCCCCCCeEEEEEEEcCCc-----eeE--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-
Q psy16852 167 ISEATPQDEAVYSVKAVNTFG-----RAE--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT- 238 (579)
Q Consensus 167 i~~~~~~d~G~Y~C~~~~~~~-----~~~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~- 238 (579)
|.+++.+|+|.|+|.+.+... ... ....+.|...... ......+.+.. +....+..|+.++|.|.+.+.
T Consensus 84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~--~~~~p~~~v~~-p~~~~~~~g~~v~L~C~~~g~~ 160 (242)
T 1hxm_B 84 IHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLD--ADVSPKPTIFL-PSIAETKLQKAGTYLCLLEKFF 160 (242)
T ss_dssp ECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCC--SCCSCBCCCCC-CCGGGGGSSSCEEEEEEEEEES
T ss_pred ECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccC--CCcCCCceEEC-CChhhcccCCCceEEEEEeeEE
Confidence 999999999999999987531 111 1234444321000 00001111211 222345679999999999985
Q ss_pred CC-CeEEEEECCE-EeccCc---eEEe----CCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEE
Q psy16852 239 PT-PEVKWFKNGK-EIVSKD---IETK----DNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSV 296 (579)
Q Consensus 239 p~-~~v~W~~~~~-~i~~~~---~~~~----~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~ 296 (579)
|. +.+.|++++. .+.... .... ...+.|.|..... + |.|+|.|.|..+.......+
T Consensus 161 P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~ 225 (242)
T 1hxm_B 161 PDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEI 225 (242)
T ss_dssp SCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEE
T ss_pred CCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEe
Confidence 65 6999999987 553221 1111 1235788887765 4 99999999988765444333
No 383
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Probab=99.65 E-value=1.9e-16 Score=141.16 Aligned_cols=166 Identities=15% Similarity=0.159 Sum_probs=107.0
Q ss_pred EccCCcEEEEEEEEee---cCC-eEEEEECCEEccCCCCc-eEEEcCC--CCeEEEEECcCCCCCCeEEEEEEEcCCcee
Q psy16852 117 AEAQSPATLKATVTGR---PTP-SICWYRGKEEILPDNGH-TMEFNPT--TGECVLSISEATPQDEAVYSVKAVNTFGRA 189 (579)
Q Consensus 117 ~~~g~~~~l~C~~~~~---p~~-~i~W~~~~~~~~~~~~~-~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (579)
+.+|+.++|.|.+.+. |.+ .|.||+++..+...... ....... ...+.|.|.+++.+|+|.|+|.+.+..+..
T Consensus 29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 108 (239)
T 1i1c_A 29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA 108 (239)
T ss_dssp TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence 6789999999999887 665 99999998765432110 0010000 123579999999999999999999987754
Q ss_pred EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCC-CeEEEEECCEEeccCce---EEe-CC-
Q psy16852 190 ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPT-PEVKWFKNGKEIVSKDI---ETK-DN- 262 (579)
Q Consensus 190 ~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-~~v~W~~~~~~i~~~~~---~~~-~~- 262 (579)
.....+.+. ..+..+|.+...+.......|+.+.|.|.+.| +|. ..+.|++||..+..... ... ++
T Consensus 109 ~~~~~v~~~-------~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~dgt 181 (239)
T 1i1c_A 109 PIEKSISKP-------EGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGS 181 (239)
T ss_dssp CEEEEECCC-------SSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSC
T ss_pred CcEEEEecC-------CCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceECCCCC
Confidence 222222110 11234565544333222334789999999998 555 38999999998754221 111 11
Q ss_pred ---eEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852 263 ---VTKLVIKQTTKKTTGKYEIRVVNEAGE 289 (579)
Q Consensus 263 ---~~~l~i~~~~~~d~G~y~C~a~n~~g~ 289 (579)
.+.|.|.....+|.|.|+|.|.|....
T Consensus 182 ~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~ 211 (239)
T 1i1c_A 182 YFLYSKLNVKKETWQQGNTFTCSVLHEGLE 211 (239)
T ss_dssp EEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred EEEEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence 133555555556799999999997743
No 384
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.65 E-value=1.8e-15 Score=114.90 Aligned_cols=94 Identities=22% Similarity=0.432 Sum_probs=84.2
Q ss_pred CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEec--CCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELH--ATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (579)
.+||.|...|..+.+.+|+.++|.|.+.+.|.+.+.|+++|..+. ...++.+.......+|.|.+++.+|+|.|+|.|
T Consensus 3 ~~pP~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 82 (100)
T 3irg_A 3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSL 82 (100)
T ss_dssp CEEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCCeeecCCCcEEEcCCCcEEEEEEEEEcCCCceEEEECCEEeecCCCCEEEEEecCCEEEEEEeecCcccCEEEEEEE
Confidence 468999999999999999999999999999999999999999986 345777777677789999999999999999999
Q ss_pred EcCCeeeEEEEEEEEE
Q psy16852 82 TNIGGVATCSANLIVL 97 (579)
Q Consensus 82 ~~~~g~~~~~~~~~v~ 97 (579)
.|..|.....+.|.|.
T Consensus 83 ~n~~g~~~~~~~l~V~ 98 (100)
T 3irg_A 83 GNEFGSDSATVNIHIR 98 (100)
T ss_dssp EETTEEEEEEEEEEEE
T ss_pred EeCCCcEEEEEEEEEE
Confidence 9999998888888774
No 385
>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*
Probab=99.65 E-value=1.8e-15 Score=135.64 Aligned_cols=181 Identities=14% Similarity=0.195 Sum_probs=113.2
Q ss_pred ccccCceeeeCCCCEEEEEEEEee--CCCeeEEEECC--E---Ee--------------cCCCCEEEEEe--CCEEEEEE
Q psy16852 10 IEKIQPVVSHQEQPALFTCKVEGH--PLPTMTWQKDG--T---EL--------------HATEHYLITTV--ESVSTLEI 66 (579)
Q Consensus 10 ~~~p~~~~v~~G~~~~l~C~~~~~--~~~~v~W~~~g--~---~~--------------~~~~~~~~~~~--~~~~~L~i 66 (579)
+..|.++.+.+|++|+|.|.+.+. +...+.|||.. . .+ ....++..... ....+|+|
T Consensus 3 l~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 82 (248)
T 3u2s_H 3 LVESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQM 82 (248)
T ss_dssp EEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred eecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEE
Confidence 456888999999999999999752 34579999832 1 11 01245555443 35678999
Q ss_pred cCCCCCCCEEEEEEEEcCC----------------------eeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEE
Q psy16852 67 INPTKEDIGVYTCKATNIG----------------------GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPAT 124 (579)
Q Consensus 67 ~~~~~~d~G~Y~C~~~~~~----------------------g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 124 (579)
.+++.+|+|.|.|.+.+.. ......+.+.|... ...+|.+........+..|+.++
T Consensus 83 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~--~~~~P~v~~~~~~~~~~~g~~~~ 160 (248)
T 3u2s_H 83 NSLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSA--STKGPSVFPLAPSSKSTSGGTAA 160 (248)
T ss_dssp CSCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSC--CCBCCEEEEECCC------CEEE
T ss_pred CCCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEccc--CCCCCEEEEeCCCccccCCCcEE
Confidence 9999999999999998631 11122345666522 12344444333333445799999
Q ss_pred EEEEEEee-c-CCeEEEEECCEEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy16852 125 LKATVTGR-P-TPSICWYRGKEEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAECRANL 195 (579)
Q Consensus 125 l~C~~~~~-p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~ 195 (579)
|.|.+.+. | ...+.|++++..+........ .. .++ .+.|.|......| |.|+|.+.|..+.......+
T Consensus 161 L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~-~~-~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l 234 (248)
T 3u2s_H 161 LGCLVKDYFPEPVTVSWNSGALTSGVHTFPAV-LQ-SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV 234 (248)
T ss_dssp EEEEEEEEBSSCCEEEEGGGTBCTTEEECCCE-EC-TTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEEC
T ss_pred EEEEEeeEECCCeEEEEeECCccCceeecCce-EC-CCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEE
Confidence 99999874 4 368999998754221100001 11 111 2468888888888 99999999987765544433
No 386
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=99.65 E-value=9.2e-16 Score=138.56 Aligned_cols=177 Identities=14% Similarity=0.166 Sum_probs=113.9
Q ss_pred CceEEccCCcEEEEEEEEee--cCCeEEEEECCE-----Ec--------------cCCCCceEEEcCCCCeEEEEECcCC
Q psy16852 113 KPVIAEAQSPATLKATVTGR--PTPSICWYRGKE-----EI--------------LPDNGHTMEFNPTTGECVLSISEAT 171 (579)
Q Consensus 113 ~~~~~~~g~~~~l~C~~~~~--p~~~i~W~~~~~-----~~--------------~~~~~~~~~~~~~~~~~~l~i~~~~ 171 (579)
..+.+.+|++++|.|.+.+. +...+.||+... .+ ....++.+..+...+..+|.|.+++
T Consensus 8 ~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 87 (253)
T 3liz_H 8 GGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLK 87 (253)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCC
T ss_pred CCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCC
Confidence 45678899999999999763 357899998421 11 0113444444444567889999999
Q ss_pred CCCCeEEEEEEEcCC----ceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCC-eEEE
Q psy16852 172 PQDEAVYSVKAVNTF----GRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTP-EVKW 245 (579)
Q Consensus 172 ~~d~G~Y~C~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W 245 (579)
.+|+|.|+|.+.+.. ........+.|... ...+|.+........+..|+.++|.|.+.+ .|.+ .+.|
T Consensus 88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~-------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W 160 (253)
T 3liz_H 88 SEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAA-------KTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTW 160 (253)
T ss_dssp GGGCEEEEEEECCBTTTBCCEECCCEEEEECSS-------CCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEE
T ss_pred hhhCEEEEEEEecCCcceeeEECCCEEEEEecc-------CCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEE
Confidence 999999999998752 11122234444311 123555543333334567999999999998 6766 8999
Q ss_pred EECCEEeccCc---e---EEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEE
Q psy16852 246 FKNGKEIVSKD---I---ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVT 297 (579)
Q Consensus 246 ~~~~~~i~~~~---~---~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~ 297 (579)
++++..+.... . ......+.|.|.....+| |.|+|.|.|..+.......+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~ 217 (253)
T 3liz_H 161 NSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV 217 (253)
T ss_dssp GGGTBCTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECC
T ss_pred EeCCeecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEec
Confidence 99886321100 0 112223679999999999 999999999887665554443
No 387
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=99.65 E-value=1.1e-15 Score=114.08 Aligned_cols=90 Identities=16% Similarity=0.335 Sum_probs=74.5
Q ss_pred CCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCC--EEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGK--EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 484 (579)
Q Consensus 407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~--~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~ 484 (579)
+|.+..++....+.+|+.+.|.|.+.|.|.|.+.|++++ ..+.... .+.
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~--~~~--------------------------- 52 (93)
T 1wit_A 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPEL--LVD--------------------------- 52 (93)
T ss_dssp CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTS--EEE---------------------------
T ss_pred CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcE--EEE---------------------------
Confidence 677777778888999999999999999999999999998 7764331 111
Q ss_pred ecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 485 SSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 485 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.....+.|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus 53 --------~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 93 (93)
T 1wit_A 53 --------AKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93 (93)
T ss_dssp --------EETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred --------ecCCEEEEEECCCChhcCEEEEEEEEcCCCeEEEEEEEEEC
Confidence 12344669999999999999999999999999999988863
No 388
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=99.65 E-value=3.7e-15 Score=112.82 Aligned_cols=93 Identities=25% Similarity=0.381 Sum_probs=79.5
Q ss_pred CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS 485 (579)
Q Consensus 406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 485 (579)
.+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+..
T Consensus 5 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~--------------------------- 57 (99)
T 3puc_A 5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSE--------------------------- 57 (99)
T ss_dssp EEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEE---------------------------
T ss_pred CCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEE---------------------------
Confidence 36777777788899999999999999999999999999999987666554432
Q ss_pred cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
++..+.|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus 58 --------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 97 (99)
T 3puc_A 58 --------DKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97 (99)
T ss_dssp --------ETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred --------eCCEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEEEE
Confidence 3345569999999999999999999999999999999885
No 389
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.65 E-value=4.2e-16 Score=159.60 Aligned_cols=168 Identities=17% Similarity=0.311 Sum_probs=118.6
Q ss_pred cCceeeeCCCCEEEEEEE-EeeCCCeeEEEECCEEecC------------CCCEEEEEeCCEEEEEEcCCCCCCCEEEEE
Q psy16852 13 IQPVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHA------------TEHYLITTVESVSTLEIINPTKEDIGVYTC 79 (579)
Q Consensus 13 p~~~~v~~G~~~~l~C~~-~~~~~~~v~W~~~g~~~~~------------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 79 (579)
...+.+.+|++++|.|.+ .+.|.+.++||+++..+.. ..+..+ . ...+|.|.+++.+|+|.|+|
T Consensus 373 ~~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~--~-~~~~L~i~~v~~~D~G~Y~C 449 (581)
T 3o3u_N 373 AQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARV--L-PNGSLFLPAVGIQDEGIFRC 449 (581)
T ss_dssp CEEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEE--C-TTSCEEESSCCGGGCEEEEE
T ss_pred hcccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEE--c-CCceEEEeccccccCeEEEE
Confidence 345789999999999999 7778889999998753210 112111 1 22479999999999999999
Q ss_pred EEEcCCeee-EEEEEEEEEecccCCCCCceecCCCceEEccCCc-EEEEEEEEe-ecCCeEEEEECCEEccCCCCceEE-
Q psy16852 80 KATNIGGVA-TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP-ATLKATVTG-RPTPSICWYRGKEEILPDNGHTME- 155 (579)
Q Consensus 80 ~~~~~~g~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~-~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~- 155 (579)
.+.+..+.. ...+.|.|...+. .|.+..... . +.+|+. +.|.|.+.+ +|.+.|+|++++..+.........
T Consensus 450 ~~~n~~~~~~~~~~~l~V~~~~~---~p~i~~~~~-~-~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~ 524 (581)
T 3o3u_N 450 QAMNRNGKETKSNYRVRVYQIPG---KPEIVDSAS-E-LTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVK 524 (581)
T ss_dssp EEECTTSCEEEEEEEEEEEBCCC---CCEEESCCS-E-ECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEE
T ss_pred EEEcCCCceeEEEEEEEEEcCCC---CCEEEcCCc-c-cccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEE
Confidence 999988876 6678888876532 334433222 2 445554 467999987 599999999999988754332211
Q ss_pred ----EcCCCC----eEEEEECcCC-CCCCeEEEEEEEcCCce
Q psy16852 156 ----FNPTTG----ECVLSISEAT-PQDEAVYSVKAVNTFGR 188 (579)
Q Consensus 156 ----~~~~~~----~~~l~i~~~~-~~d~G~Y~C~~~~~~~~ 188 (579)
.+...| .++|.|..++ .++.|.|+|.++|....
T Consensus 525 ~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~ 566 (581)
T 3o3u_N 525 EQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR 566 (581)
T ss_dssp EEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred eeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence 111222 3579999998 55588999999998643
No 390
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.64 E-value=3.7e-15 Score=136.75 Aligned_cols=175 Identities=13% Similarity=0.154 Sum_probs=112.5
Q ss_pred CCceEEccCCcEEEEEEEEee--cCCeEEEEECCEE--cc-----------------CCCCceEEEcCCCCeEEEEECcC
Q psy16852 112 LKPVIAEAQSPATLKATVTGR--PTPSICWYRGKEE--IL-----------------PDNGHTMEFNPTTGECVLSISEA 170 (579)
Q Consensus 112 ~~~~~~~~g~~~~l~C~~~~~--p~~~i~W~~~~~~--~~-----------------~~~~~~~~~~~~~~~~~l~i~~~ 170 (579)
+..+.+.+|++++|.|.+.+. +.+.+.||+.... .. ...++.+..+...+..+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (280)
T 3fku_X 7 SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSL 86 (280)
T ss_dssp CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSC
T ss_pred CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence 566788899999999999764 5589999984211 00 01244444445566789999999
Q ss_pred CCCCCeEEEEEEEcCC---------ceeEEEEEEEEee-ccc---cCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc
Q psy16852 171 TPQDEAVYSVKAVNTF---------GRAECRANLVLRK-ATT---IDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG 237 (579)
Q Consensus 171 ~~~d~G~Y~C~~~~~~---------~~~~~~~~~~v~~-~~~---~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~ 237 (579)
+.+|+|.|+|.+.+.. ........+.+.. ... ........++.+...+. ..+.+|++++|.|.+.+
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C~~~~ 165 (280)
T 3fku_X 87 RSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTCTGNS 165 (280)
T ss_dssp CSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEEECCC
T ss_pred ChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEEEecC
Confidence 9999999999998861 1111223344432 000 00000112344444444 67899999999999987
Q ss_pred -cC-CCeEEEEEC--CEEec-------------cCc--eEEeCCeEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852 238 -TP-TPEVKWFKN--GKEIV-------------SKD--IETKDNVTKLVIKQTTKKTTGKYEIRVVNEA 287 (579)
Q Consensus 238 -~p-~~~v~W~~~--~~~i~-------------~~~--~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~ 287 (579)
.+ .+.+.|++. +..+. ... .........|.|.+++.+|+|.|.|.+.+..
T Consensus 166 ~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 234 (280)
T 3fku_X 166 NNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSS 234 (280)
T ss_dssp CCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred CCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence 44 368999983 22111 011 1223455679999999999999999998865
No 391
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}
Probab=99.64 E-value=1.8e-15 Score=134.47 Aligned_cols=169 Identities=18% Similarity=0.175 Sum_probs=103.3
Q ss_pred eEEEeee-CC-C-eEEEEECCEEc-cCCCeEEEEECCCC----eEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEE
Q psy16852 328 PVVVTGK-PT-P-LVTWSHDGTPM-KEGKEVTIYQDTDG----LCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVE 399 (579)
Q Consensus 328 ~~~~~g~-p~-~-~i~W~~~~~~~-~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 399 (579)
.|.+.|. |. + .++|+++|..+ ....... ....++ .+.|.|.++..+|+|.|+|.|.|..+.. ...+.|.
T Consensus 34 ~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~-~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~--~~~~~v~ 110 (231)
T 2w59_A 34 RCLVVNLPSDSSLSVTWTREKSGNLRPDPMVL-QEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEELPL--PLSKSVY 110 (231)
T ss_dssp EEEEEEESCCTTCEEEEECSSSSCCCCCCCEE-EECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTCSS--CEEEEEC
T ss_pred EEEEeCccCCCCeEEEEEcCCeeccccccccc-eECCCCcEEEEEEEEecchhccCCCEEEEEEEcCCCCC--ceEEEEe
Confidence 4667775 53 4 99999999877 3322221 122222 2479999999999999999999987642 3334443
Q ss_pred ecccCCCCCeeec-CCCceeeecCCCeEEEEEEEee-C-CCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccC--
Q psy16852 400 EKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGR-P-TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATP-- 474 (579)
Q Consensus 400 ~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~-p-~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~-- 474 (579)
.......+|.+.. .+....+ .|+.++|.|.+.|+ | .+.|.|+++|..+..+...... +.......
T Consensus 111 ~~~~~~~~P~v~v~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~---------~~~~~~~~~~ 180 (231)
T 2w59_A 111 RNTGPTTPPLIYPFAPHPEEL-SLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTA---------VLPEERTANG 180 (231)
T ss_dssp CCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECC---------CEECCTTSCC
T ss_pred cCCCCCcCCEEEEeCCCHHHh-ccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCc---------cccCcccccc
Confidence 2111113555543 2222223 35579999999996 4 3699999999988544211000 00000000
Q ss_pred --CCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCee
Q psy16852 475 --QDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523 (579)
Q Consensus 475 --~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 523 (579)
.|.|.|... +.|.|.....+|.|.|+|.|.|....
T Consensus 181 ~~~d~gt~~~~--------------s~L~i~~~~~~~~g~YtC~v~n~~l~ 217 (231)
T 2w59_A 181 AGGDGDTFFVY--------------SKMSVETAKWNGGTVFACMAVHEALP 217 (231)
T ss_dssp ---CCCCEEEE--------------EEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred cCCCCCeEEEE--------------EEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence 122445333 44999999999999999999998764
No 392
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Probab=99.64 E-value=2.7e-16 Score=139.53 Aligned_cols=199 Identities=17% Similarity=0.165 Sum_probs=108.1
Q ss_pred EEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceE-EccCCcEEEEEEEEeec----CCeEEEEECCEEccCC
Q psy16852 75 GVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVI-AEAQSPATLKATVTGRP----TPSICWYRGKEEILPD 149 (579)
Q Consensus 75 G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~g~~~~l~C~~~~~p----~~~i~W~~~~~~~~~~ 149 (579)
|.|.|.+.+..+.... ...+ ..|..+...+.... +..|+.++|.|.+.+++ ...|+|++++..+...
T Consensus 1 ~~~~~~~~~~~~~c~~--~~~~------~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~ 72 (240)
T 4acp_A 1 GTKSCDKTHTCPPCPA--PELL------GGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNA 72 (240)
T ss_dssp ------------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCC
T ss_pred CceeeeeeecCCCCCc--cccC------CCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCc
Confidence 7899999886553111 1001 01223333444444 55699999999999864 3489999999987543
Q ss_pred CCceEEEcCC---CCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCC
Q psy16852 150 NGHTMEFNPT---TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKD 226 (579)
Q Consensus 150 ~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 226 (579)
.......... ...+.|.|.....+|.|.|+|.+.+..+.......+.+.. .+..+|.+...+.......|
T Consensus 73 ~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~-------~~~~~P~V~v~~~~~~~~~g 145 (240)
T 4acp_A 73 KTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAK-------GQPREPQVYTLPPSRDELTK 145 (240)
T ss_dssp EECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCC-------SCCBCCEEEEECCCGGGGGS
T ss_pred eeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccC-------CCCCCCEEEEECCChHHhcC
Confidence 1111111100 1124688887777889999999999876433332222110 12345655544333223348
Q ss_pred CeEEEEEEEEc-cCCC-eEEEEECCEEeccCc---eE-----EeCCeEEEEEcccCCCCCeEEEEEEEcCCe
Q psy16852 227 STVTLEAEYTG-TPTP-EVKWFKNGKEIVSKD---IE-----TKDNVTKLVIKQTTKKTTGKYEIRVVNEAG 288 (579)
Q Consensus 227 ~~~~l~C~~~~-~p~~-~v~W~~~~~~i~~~~---~~-----~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g 288 (579)
+.++|.|.+.+ +|.+ .+.|+++|..+.... .. .....+.|.+.....++.|.|+|+|.+..-
T Consensus 146 ~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l 217 (240)
T 4acp_A 146 NQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL 217 (240)
T ss_dssp SEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred CceEEEEEEeEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCC
Confidence 99999999998 5654 899999999875321 00 111234566766666688999999998764
No 393
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3.3e-15 Score=117.07 Aligned_cols=94 Identities=19% Similarity=0.282 Sum_probs=81.4
Q ss_pred CCCcccc---ccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852 5 LAPRFIE---KIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81 (579)
Q Consensus 5 ~~p~~~~---~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (579)
.+|.|.. .+..+.+.+|+.++|.|.+.|.|.+.+.|+++|..+. ..++.+........|.|.+++.+|+|.|+|.|
T Consensus 20 ~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 98 (118)
T 2e7c_A 20 EPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYELSV 98 (118)
T ss_dssp EEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEECSSEEEEEESSCCTTTCEEEEEEE
T ss_pred cCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEECCCeEEEEECCCChhcCEEEEEEE
Confidence 4777765 3577999999999999999999999999999999997 45556666667788999999999999999999
Q ss_pred EcCCeeeEEEEEEEEEec
Q psy16852 82 TNIGGVATCSANLIVLEK 99 (579)
Q Consensus 82 ~~~~g~~~~~~~~~v~~~ 99 (579)
.|..|.....+.|.|.++
T Consensus 99 ~N~~G~~~~~~~l~V~~~ 116 (118)
T 2e7c_A 99 QIENMKDTATIRIRVVEK 116 (118)
T ss_dssp ECSSCEECCEEEEEEECC
T ss_pred EeCCCeEEEEEEEEEEcC
Confidence 999998888888888754
No 394
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=118.06 Aligned_cols=97 Identities=32% Similarity=0.560 Sum_probs=84.7
Q ss_pred CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecC-CCCEEEEEe-CCEEEEEEcCCCCCCCEEEEEEE
Q psy16852 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA-TEHYLITTV-ESVSTLEIINPTKEDIGVYTCKA 81 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~-~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~ 81 (579)
..||.|...|.++.+.+|+.++|.|.+.+.|.+.+.|+++|..+.. ..++.+... .+...|.|.+++.+|+|.|+|.|
T Consensus 6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 85 (110)
T 2dm2_A 6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMA 85 (110)
T ss_dssp SCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEE
T ss_pred CCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEE
Confidence 4689999999999999999999999999999999999999999875 456665554 34568999999999999999999
Q ss_pred EcCCeeeEEEEEEEEEecc
Q psy16852 82 TNIGGVATCSANLIVLEKE 100 (579)
Q Consensus 82 ~~~~g~~~~~~~~~v~~~~ 100 (579)
.|..|.....+.|.|...+
T Consensus 86 ~N~~g~~~~~~~l~V~~~~ 104 (110)
T 2dm2_A 86 ANPQGRISCTGRLMVQAVN 104 (110)
T ss_dssp ECTTCCEEECCCEEEECCS
T ss_pred EECCCeEEEEEEEEEECCC
Confidence 9999998888888887654
No 395
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=99.64 E-value=4.3e-15 Score=112.40 Aligned_cols=93 Identities=26% Similarity=0.447 Sum_probs=77.2
Q ss_pred CCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS 486 (579)
Q Consensus 407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 486 (579)
+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+....+...
T Consensus 5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~------------------------------ 54 (99)
T 1u2h_A 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFA------------------------------ 54 (99)
T ss_dssp EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEE------------------------------
T ss_pred CCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEE------------------------------
Confidence 67777777788899999999999999999999999999998865443221
Q ss_pred ceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 487 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
+..++..+.|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 55 ----~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~~~~~l~V~ 97 (99)
T 1u2h_A 55 ----EEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVR 97 (99)
T ss_dssp ----EECGGGEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ----EECCCCEEEEEEccCCcCCCEEEEEEEEECCCceeEEEEEEEE
Confidence 1123334569999999999999999999999999999999875
No 396
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=99.64 E-value=3.5e-16 Score=119.63 Aligned_cols=95 Identities=28% Similarity=0.481 Sum_probs=86.3
Q ss_pred cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
...+|.|+..|.++.+.+|++++|.|.+.|.|.+.+.|+++|..+....++.........+|.|.+++.+|+|.|+|.|.
T Consensus 11 ~~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 90 (106)
T 1nct_A 11 TTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVE 90 (106)
T ss_dssp SSCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCB
T ss_pred CCCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEE
Confidence 45788999999999999999999999999999999999999999988888887777778899999999999999999999
Q ss_pred cCCeeeEEEEEEEEE
Q psy16852 83 NIGGVATCSANLIVL 97 (579)
Q Consensus 83 ~~~g~~~~~~~~~v~ 97 (579)
|..|.....+.|.|.
T Consensus 91 N~~G~~~~~~~l~V~ 105 (106)
T 1nct_A 91 NSEGKQEAEFTLTIQ 105 (106)
T ss_dssp CSSCBCCEEEEEEEC
T ss_pred eCCCeEEEEEEEEEE
Confidence 999988888877773
No 397
>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...
Probab=99.64 E-value=4.3e-15 Score=132.04 Aligned_cols=181 Identities=13% Similarity=0.183 Sum_probs=114.7
Q ss_pred cccCceeeeCCCCEEEEEEEEee--CCCeeEEEECC--E---Ee--------------cCCCCEEEEEeC--CEEEEEEc
Q psy16852 11 EKIQPVVSHQEQPALFTCKVEGH--PLPTMTWQKDG--T---EL--------------HATEHYLITTVE--SVSTLEII 67 (579)
Q Consensus 11 ~~p~~~~v~~G~~~~l~C~~~~~--~~~~v~W~~~g--~---~~--------------~~~~~~~~~~~~--~~~~L~i~ 67 (579)
..|..+.+.+|++++|.|.+.+. ....+.|||.. . .+ ....++.+.... ...+|+|.
T Consensus 5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 84 (230)
T 3n9g_H 5 VQSGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELS 84 (230)
T ss_dssp EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred EecCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEEC
Confidence 34667999999999999999752 34579999832 1 11 012456555443 46789999
Q ss_pred CCCCCCCEEEEEEEEcCC-----e---eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-c-CCeE
Q psy16852 68 NPTKEDIGVYTCKATNIG-----G---VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-P-TPSI 137 (579)
Q Consensus 68 ~~~~~d~G~Y~C~~~~~~-----g---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~i 137 (579)
+++.+|+|.|+|.+.+.. + .....+.+.|...+ ..+|.+........+.+|+.++|.|.+.+. | .+.+
T Consensus 85 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v 162 (230)
T 3n9g_H 85 SLRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSAS--TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV 162 (230)
T ss_dssp SCCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSC--CBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEE
T ss_pred CCChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecC--CCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEE
Confidence 999999999999998753 1 11133456665322 233444432223334589999999999875 4 3579
Q ss_pred EEEECCEEccCCCCc-eEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEE
Q psy16852 138 CWYRGKEEILPDNGH-TMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVL 197 (579)
Q Consensus 138 ~W~~~~~~~~~~~~~-~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v 197 (579)
.| ++..+...... ..... .++ .+.|.|.....+| |.|+|.+.|..+.......+.+
T Consensus 163 ~W--~~~~~~~~~~~~~~~~~-~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v 223 (230)
T 3n9g_H 163 SW--NSGALTSGVHTFPAVLQ-SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP 223 (230)
T ss_dssp EE--GGGTBCTTEEECCCEEC-TTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred EE--CCcccCCCeEeCCceEC-CCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccC
Confidence 99 44433211000 00011 111 2478999999999 9999999998776555444433
No 398
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.64 E-value=4.3e-15 Score=129.32 Aligned_cols=167 Identities=14% Similarity=0.166 Sum_probs=107.7
Q ss_pred cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC--E---Eec-------CCCCEEEEEe---CCEEEEEEcCCCCCC
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG--T---ELH-------ATEHYLITTV---ESVSTLEIINPTKED 73 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g--~---~~~-------~~~~~~~~~~---~~~~~L~i~~~~~~d 73 (579)
+...|..+.+.+|++++|.|.+.+.. +.+.|||.. . .+. ...++..... .+...|+|.+++.+|
T Consensus 4 v~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D 82 (207)
T 1ypz_E 4 VEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLED 82 (207)
T ss_dssp EEESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGG
T ss_pred cEECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHH
Confidence 55678889999999999999997654 489999843 1 111 2355665544 456899999999999
Q ss_pred CEEEEEEEEcCCe---------e--eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC-CeEEEE
Q psy16852 74 IGVYTCKATNIGG---------V--ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT-PSICWY 140 (579)
Q Consensus 74 ~G~Y~C~~~~~~g---------~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~ 140 (579)
+|.|+|.+.+..+ . ....+.|.|........+|.+ .+..+ .++|.|.+.++ |. +.|.|+
T Consensus 83 ~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P~v-------~~~~~-~~~l~C~~~g~~P~~~~v~W~ 154 (207)
T 1ypz_E 83 SGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSV-------FIMKN-GTNVACLVKDFYPKEVTISLR 154 (207)
T ss_dssp CEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCCEE-------EEEEE-TTEEEEEEEEESSSCCEEEEE
T ss_pred CEEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCCCCeE-------EEeCC-CCeEEEEEeeEeCCCeEEEEe
Confidence 9999999987532 1 113456777643211122222 22222 37999999876 43 799999
Q ss_pred ECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852 141 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGR 188 (579)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 188 (579)
++ ..+..... ..... .++...+. .....+|.|.|+|.+.|..+.
T Consensus 155 ~~-~~l~~~~~-~~~~~-~~g~y~~~-~~~~~~~~~~ytC~v~~~~~~ 198 (207)
T 1ypz_E 155 SS-KKIVEFDP-AIVIS-PSGKYSAV-KLGQYGDSNSVTCSVQHNSET 198 (207)
T ss_dssp CS-SEEEECCC-EEEEC-TTSSEEEE-ECEEESSTTTCEEEEEETTEE
T ss_pred cC-CcccCCcc-ceEEc-CCCcEEEE-EeecccCCCcEEEEEEECCcc
Confidence 99 66543221 12222 23333333 223336789999999998654
No 399
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Probab=99.63 E-value=3.6e-16 Score=138.66 Aligned_cols=180 Identities=16% Similarity=0.168 Sum_probs=108.6
Q ss_pred CCccccccCcee-eeCCCCEEEEEEEEeeC----CCeeEEEECCEEecCCCCEEEEE--eC---CEEEEEEcCCCCCCCE
Q psy16852 6 APRFIEKIQPVV-SHQEQPALFTCKVEGHP----LPTMTWQKDGTELHATEHYLITT--VE---SVSTLEIINPTKEDIG 75 (579)
Q Consensus 6 ~p~~~~~p~~~~-v~~G~~~~l~C~~~~~~----~~~v~W~~~g~~~~~~~~~~~~~--~~---~~~~L~i~~~~~~d~G 75 (579)
|+.++..|.... +..|+.++|.|.+.|.. ...|+|+|||..+.......... ++ ..+.|.|.....+|+|
T Consensus 23 P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~ 102 (240)
T 4acp_A 23 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGK 102 (240)
T ss_dssp CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHTC
T ss_pred CEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccCCC
Confidence 344455566666 66799999999999864 33799999999885321000000 01 1257888877788899
Q ss_pred EEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC-CeEEEEECCEEccCCCCce
Q psy16852 76 VYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT-PSICWYRGKEEILPDNGHT 153 (579)
Q Consensus 76 ~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~ 153 (579)
.|+|+|.+..+.......+... .....+|.+..........+|+.++|.|.+.++ |. ..+.|++++..+.......
T Consensus 103 ~YtC~v~h~~~~~~~~~~i~~~--~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~ 180 (240)
T 4acp_A 103 EYKCKVSNKALPAPIEKTISKA--KGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATP 180 (240)
T ss_dssp CEEEEEECC----CEEEEECCC--CSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECC
T ss_pred EEEEEEEcCCCCcccccccccc--CCCCCCCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCccC
Confidence 9999999977633222222210 011234444433322222358999999999885 54 4899999998864221111
Q ss_pred EEEcCCCC---eEEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852 154 MEFNPTTG---ECVLSISEATPQDEAVYSVKAVNTFG 187 (579)
Q Consensus 154 ~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~~~~~~~ 187 (579)
...+..+. .+.|.+......+.|.|+|.+.+...
T Consensus 181 ~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l 217 (240)
T 4acp_A 181 PVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL 217 (240)
T ss_dssp CEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred ceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCC
Confidence 11111111 24567766666788999999998754
No 400
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.63 E-value=2.5e-15 Score=137.18 Aligned_cols=177 Identities=13% Similarity=0.147 Sum_probs=110.9
Q ss_pred CceecCCCceEEccCCcEEEEEEEEeec-----CCeEEEEECC--E---Ecc---------CCCCceEEEcCCCCeEEEE
Q psy16852 106 PKFTKPLKPVIAEAQSPATLKATVTGRP-----TPSICWYRGK--E---EIL---------PDNGHTMEFNPTTGECVLS 166 (579)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p-----~~~i~W~~~~--~---~~~---------~~~~~~~~~~~~~~~~~l~ 166 (579)
+.+...+..+.+.+|++++|.|.+.+.+ .+.+.||++. . .+. ...++.. ....+..+|.
T Consensus 16 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~--~~~~~~~~L~ 93 (268)
T 1x9q_A 16 VVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSG--SGSGTDFTLK 93 (268)
T ss_dssp CCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEE--EEETTEEEEE
T ss_pred ceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEE--EcCCCEEEEE
Confidence 3445556677889999999999998776 4799999853 1 111 0122222 2234567899
Q ss_pred ECcCCCCCCeEEEEEEEcCCceeE-EEEEEEEeeccccCCCCccCCC--------------eEeccCCceeeCCCCeEEE
Q psy16852 167 ISEATPQDEAVYSVKAVNTFGRAE-CRANLVLRKATTIDKPRVLEAP--------------TIVRPLQALLVPKDSTVTL 231 (579)
Q Consensus 167 i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~p--------------~~~~~~~~~~~~~g~~~~l 231 (579)
|.+++.+|+|.|+|.+.+..+... ....+.|........ .+ .+| .....+....+.+|+.++|
T Consensus 94 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~-p~-~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L 171 (268)
T 1x9q_A 94 INRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAK-KD-AAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKL 171 (268)
T ss_dssp ESSCCGGGCEEEEEEECSSSSCEECCCEEEC--------------------------CGGGCEEEEECCEEECTTCCEEE
T ss_pred ECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCC-cc-ccccccccccccccccceEEECCCceEecCCCcEEE
Confidence 999999999999999988754211 122333332110000 00 011 1222234567889999999
Q ss_pred EEEEEccCC--CeEEEEEC--CEEec--------------------cCceEEe----CCeEEEEEcccCCCCCeEEEEEE
Q psy16852 232 EAEYTGTPT--PEVKWFKN--GKEIV--------------------SKDIETK----DNVTKLVIKQTTKKTTGKYEIRV 283 (579)
Q Consensus 232 ~C~~~~~p~--~~v~W~~~--~~~i~--------------------~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~a 283 (579)
.|.+.+.+. +.+.|+++ +..+. ....... .....|.|.+++.+|+|.|+|.|
T Consensus 172 ~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a 251 (268)
T 1x9q_A 172 SCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTG 251 (268)
T ss_dssp EEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEE
Confidence 999998653 68999984 22210 0111111 23468999999999999999999
Q ss_pred EcC
Q psy16852 284 VNE 286 (579)
Q Consensus 284 ~n~ 286 (579)
.+.
T Consensus 252 ~~~ 254 (268)
T 1x9q_A 252 ASY 254 (268)
T ss_dssp EET
T ss_pred ccC
Confidence 874
No 401
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=99.63 E-value=1.1e-15 Score=134.27 Aligned_cols=173 Identities=17% Similarity=0.254 Sum_probs=108.2
Q ss_pred CceEEccCCcEEEEEEEEeec--CCeEEEEECC--EEc---c-------------CCCCceEEEcCCCCeEEEEECcCCC
Q psy16852 113 KPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EEI---L-------------PDNGHTMEFNPTTGECVLSISEATP 172 (579)
Q Consensus 113 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~~---~-------------~~~~~~~~~~~~~~~~~l~i~~~~~ 172 (579)
..+.+.+|++++|.|.+.+.+ .+.+.||++. ..+ . ...+..+..+...+..+|.|.+++.
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 87 (215)
T 1c5d_H 8 GPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQT 87 (215)
T ss_dssp CCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCG
T ss_pred CCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCc
Confidence 456788999999999998754 4789999853 111 0 0122333333344568999999999
Q ss_pred CCCeEEEEEEEcCCce---eEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCC-eEEEEE
Q psy16852 173 QDEAVYSVKAVNTFGR---AECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTP-EVKWFK 247 (579)
Q Consensus 173 ~d~G~Y~C~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~ 247 (579)
+|+|.|+|.+.+..+. ......+.|... ...+|.+........+..|+.++|.|.+.+. |.+ .+.|++
T Consensus 88 ~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~-------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~ 160 (215)
T 1c5d_H 88 EDTAIYFCTREDGWNYFDYWGPGTMVTVSSA-------QTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNS 160 (215)
T ss_dssp GGCEEEEEEECCSSSCSCCBCCCEEEEECSS-------CCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGG
T ss_pred ccCEEEEEEEecCCcccceEcCCEEEEecCC-------CCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEcc
Confidence 9999999999886421 112234444321 1123444332222235689999999999986 877 999999
Q ss_pred CCEEeccCc--eEEeCCeEEE--EEcccCCCCCeEEEEEEEcCCeeeEEE
Q psy16852 248 NGKEIVSKD--IETKDNVTKL--VIKQTTKKTTGKYEIRVVNEAGEARTS 293 (579)
Q Consensus 248 ~~~~i~~~~--~~~~~~~~~l--~i~~~~~~d~G~y~C~a~n~~g~~~~~ 293 (579)
++..+.... .....+...+ .+.....+| |.|+|.|.|..+.....
T Consensus 161 ~g~~~~~~~~~~~~~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~~ 209 (215)
T 1c5d_H 161 GALSSDVHTFPAVLQSGLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKVD 209 (215)
T ss_dssp GTTCCSCCBCCCEEETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEEE
T ss_pred CCccCceEecCcccCCCCEEEEEEEecccCCC-CeEEEEEEeCCCCccEE
Confidence 886543111 1111122111 123444456 99999999988765443
No 402
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.63 E-value=4.2e-15 Score=112.72 Aligned_cols=93 Identities=24% Similarity=0.457 Sum_probs=77.3
Q ss_pred CCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS 486 (579)
Q Consensus 407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 486 (579)
+|.+...+....+.+|+.++|.|.+.|.|.|.+.|+++|..+....+..+..
T Consensus 5 ~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~---------------------------- 56 (100)
T 2kdg_A 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIV---------------------------- 56 (100)
T ss_dssp EEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEE----------------------------
T ss_pred CCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEE----------------------------
Confidence 6777777778889999999999999999999999999999887655433221
Q ss_pred ceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 487 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.....+.|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 57 ------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 97 (100)
T 2kdg_A 57 ------SEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVL 97 (100)
T ss_dssp ------ETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ------cCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEEE
Confidence 11223469999999999999999999999999999999986
No 403
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=99.63 E-value=6.4e-15 Score=110.86 Aligned_cols=91 Identities=29% Similarity=0.377 Sum_probs=81.8
Q ss_pred ccccccCceeeeCCCCEEEEEEEEee-CCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852 8 RFIEKIQPVVSHQEQPALFTCKVEGH-PLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGG 86 (579)
Q Consensus 8 ~~~~~p~~~~v~~G~~~~l~C~~~~~-~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g 86 (579)
.+..+|.++.+.+|+.++|.|.+.+. |.+.+.||+++..+....++.+....+...|.|.+++.+|+|.|+|.+.|..|
T Consensus 3 ~v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g 82 (97)
T 2bk8_A 3 MVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYG 82 (97)
T ss_dssp CEECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSC
T ss_pred ceeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCC
Confidence 35567889999999999999999997 88899999999999888888887777788999999999999999999999999
Q ss_pred eeEEEEEEEEEe
Q psy16852 87 VATCSANLIVLE 98 (579)
Q Consensus 87 ~~~~~~~~~v~~ 98 (579)
.....+.|.|.+
T Consensus 83 ~~~~~~~l~V~~ 94 (97)
T 2bk8_A 83 EDSSYAELFVKG 94 (97)
T ss_dssp EEEEEEEEEETT
T ss_pred eEeEEEEEEEEe
Confidence 988888888753
No 404
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=99.63 E-value=6.6e-16 Score=138.94 Aligned_cols=170 Identities=14% Similarity=0.168 Sum_probs=98.3
Q ss_pred CceEEccCCcEEEEEEEEeec--CCeEEEEECC--E--E-cc--------------CCCCceEEEcCCCCeEEEEECcCC
Q psy16852 113 KPVIAEAQSPATLKATVTGRP--TPSICWYRGK--E--E-IL--------------PDNGHTMEFNPTTGECVLSISEAT 171 (579)
Q Consensus 113 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~--~-~~--------------~~~~~~~~~~~~~~~~~l~i~~~~ 171 (579)
..+.+.+|++++|.|.+.+.+ .+.+.||+.. . . +. ...++.+..+...+...|.|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 87 (257)
T 3bn9_D 8 GGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLR 87 (257)
T ss_dssp CCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCC
T ss_pred CCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCC
Confidence 356788999999999998765 5789999853 1 1 10 123344444444567899999999
Q ss_pred CCCCeEEEEEEEcCCce---------e--E--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc
Q psy16852 172 PQDEAVYSVKAVNTFGR---------A--E--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT 238 (579)
Q Consensus 172 ~~d~G~Y~C~~~~~~~~---------~--~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~ 238 (579)
.+|+|.|.|.+.+..+. . . ....+.|... ...+|.+........+..|+.++|.|.+.+.
T Consensus 88 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~-------~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~ 160 (257)
T 3bn9_D 88 AEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSA-------STKGPSVFPLAPSSKSTSGGTAALGCLVKDY 160 (257)
T ss_dssp GGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSS-------CCBCCEECCCCC-----------CCCEEEEE
T ss_pred hhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCC-------CCcCCcEEEecCcccccCCCcEEEEEEEeeE
Confidence 99999999999987541 1 1 1234444320 1124444332222235679999999999985
Q ss_pred -CCC-eEEEEECCEEeccCc---eE----EeCCeEEEEEcccCCCCCeEEEEEEEcCCeee
Q psy16852 239 -PTP-EVKWFKNGKEIVSKD---IE----TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEA 290 (579)
Q Consensus 239 -p~~-~v~W~~~~~~i~~~~---~~----~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~ 290 (579)
|.+ .+.|++++..+.... .. .....+.|.|.+...+| |.|+|.|.|.....
T Consensus 161 ~P~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~ 220 (257)
T 3bn9_D 161 FPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 220 (257)
T ss_dssp BSSCCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGTE
T ss_pred ECCCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCc
Confidence 777 999999987632110 10 01123467888887777 99999999976543
No 405
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}
Probab=99.63 E-value=1.4e-13 Score=117.68 Aligned_cols=196 Identities=16% Similarity=0.256 Sum_probs=125.5
Q ss_pred CCceeeCCCCeEEEEEEEEc-cC---CCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEE
Q psy16852 218 LQALLVPKDSTVTLEAEYTG-TP---TPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTS 293 (579)
Q Consensus 218 ~~~~~~~~g~~~~l~C~~~~-~p---~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~ 293 (579)
|....+..|+.++|+|.+.+ .| +-.++|+|||.++... ...|.+..+...++|.|+|.+.+..|....+
T Consensus 9 P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGa-------T~tLti~s~t~sdSG~YqCvVTDa~Gcs~tS 81 (304)
T 3shs_A 9 SNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN-------TATLTVADATSENAGSYKVTVQDTDTMTSVE 81 (304)
T ss_dssp ESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCC-------SSEEEESSCCGGGCEEEEEEEEETTTCCEEE
T ss_pred CCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCC-------cceEEeeeccccCCeEEEEEEEECCCCeeee
Confidence 44456888999999999875 45 3389999999887542 2478999999999999999999988876655
Q ss_pred EEEEEEeccceeeeeeee--eeccccCceeeeecCeeEEE--e-eeC-----CCeEEEEECCEEccCCCeEEEEECCCCe
Q psy16852 294 GSVTITVAEAETVMMDVR--VESHPTASFQWFIHSEPVVV--T-GKP-----TPLVTWSHDGTPMKEGKEVTIYQDTDGL 363 (579)
Q Consensus 294 ~~~~v~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~--~-g~p-----~~~i~W~~~~~~~~~~~~~~~~~~~~~~ 363 (579)
..+.|.......+.+.-. +.......+. +.+.+ . |.| ...++|++++..+....
T Consensus 82 s~VtVT~~a~l~i~it~P~s~~vssg~sVt-----L~aTVt~SGGtppA~~~~yTYQWyKngt~IsgAq----------- 145 (304)
T 3shs_A 82 SEVFLMEEAELIVNITEPQHFYVSSQTDVE-----LHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQ----------- 145 (304)
T ss_dssp CCCEEECBCCEEEEESSCSEEEECSSCCEE-----EEEEEEETTSCCSSTTCCCEEEEEETTEEEESSS-----------
T ss_pred eeEEEeccCceeEEecCCCceeccCCCeEE-----EEEEEeccCCCCcccCCCceeEEeeCCeEccCcc-----------
Confidence 555554332222111100 0000001111 12233 3 344 46999999998775433
Q ss_pred EEEEEcccCCCCCEEEEEEEEcCcee--EEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEE--------e
Q psy16852 364 CKLAISEVFPENAGLYSCTAVNPVGE--AVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT--------G 433 (579)
Q Consensus 364 ~~l~i~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~--------g 433 (579)
.|++......++|.|+|.+.|..+. .+.++.+.+.. .+.-........+..|+.+.|.-.+. |
T Consensus 146 -~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (304)
T 3shs_A 146 -DITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLAT------MNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSG 218 (304)
T ss_dssp -EEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECE------EEEEECCCSEEEEETTSCEEECCEEEEECCSCCTT
T ss_pred -ccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEEc------cccchhheEeehhhcCcEEEEEEEEeeccccCCCC
Confidence 5777788889999999999998763 33444444433 22222223445688899999987654 2
Q ss_pred eCCC--eEEEee
Q psy16852 434 RPTP--SICWYR 443 (579)
Q Consensus 434 ~p~~--~v~W~~ 443 (579)
.|.. ++.|+.
T Consensus 219 ~~~~~~~~~~~~ 230 (304)
T 3shs_A 219 MPNLTIKYNWYL 230 (304)
T ss_dssp CCEEEEEEEEEE
T ss_pred CCceEEEEEEEE
Confidence 3332 577875
No 406
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.63 E-value=5.8e-15 Score=141.40 Aligned_cols=177 Identities=16% Similarity=0.178 Sum_probs=114.0
Q ss_pred cccccCcee-eeCCCCEEEEEEEEee---CC-CeeEEEECCEEecCCCC-----EEEEEeCCEEEEEEcCCCCCCCEEEE
Q psy16852 9 FIEKIQPVV-SHQEQPALFTCKVEGH---PL-PTMTWQKDGTELHATEH-----YLITTVESVSTLEIINPTKEDIGVYT 78 (579)
Q Consensus 9 ~~~~p~~~~-v~~G~~~~l~C~~~~~---~~-~~v~W~~~g~~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~ 78 (579)
++..|.... +.+|+.++|.|.+.+. |. ..|+|||++..+..... +..........|.|..++.+|+|.|+
T Consensus 170 ~~~~p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~ 249 (376)
T 2aty_A 170 FIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFK 249 (376)
T ss_pred EEeCcCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEE
Confidence 344555555 8999999999999887 32 37999999866532110 00000112357999999999999999
Q ss_pred EEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-c-CCeEEEEECCEEccCCCCceEEE
Q psy16852 79 CKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-P-TPSICWYRGKEEILPDNGHTMEF 156 (579)
Q Consensus 79 C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~~~~~~ 156 (579)
|.+.+..+.......+.+ ......+|.+...+......+|+.++|.|.+.++ | .+.|+|++++..+..........
T Consensus 250 C~~~~~~~~~~~~~~v~~--~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~ 327 (376)
T 2aty_A 250 CRVNSAAFPAPIEKTISK--TKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIM 327 (376)
T ss_pred EEEecCCCCCceEEEEcC--CCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceE
Confidence 999987654333223322 1111234555544444444468999999999885 3 46999999998874322221111
Q ss_pred cCCC---CeEEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852 157 NPTT---GECVLSISEATPQDEAVYSVKAVNTFG 187 (579)
Q Consensus 157 ~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 187 (579)
.... -...|.|.....+|.|.|+|.|.|...
T Consensus 328 ~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l 361 (376)
T 2aty_A 328 NTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGL 361 (376)
T ss_pred CCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCC
Confidence 1111 124678888888889999999998754
No 407
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.62 E-value=3.6e-15 Score=131.23 Aligned_cols=191 Identities=18% Similarity=0.172 Sum_probs=107.7
Q ss_pred EEeccceeeeeeeeeecc--ccCceeeeecCeeEEEeeeCCCeEEEEECC-EE---ccCCCeEEEEECCCCeEEEEEccc
Q psy16852 298 ITVAEAETVMMDVRVESH--PTASFQWFIHSEPVVVTGKPTPLVTWSHDG-TP---MKEGKEVTIYQDTDGLCKLAISEV 371 (579)
Q Consensus 298 v~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~-~~---~~~~~~~~~~~~~~~~~~l~i~~~ 371 (579)
+.+.+|+.+.|.|.+... ....+.|+... .+.....+.++..+ .. -....++.+.. ..+.+.|.|.++
T Consensus 9 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v 82 (215)
T 3nl4_H 9 RLVTPGTPLTLACTVSGFSLNTYSMFWVRQA-----PGKGLQWIGIISNFGVIYYATWAKGRFTISK-TSTTVDLKITSP 82 (215)
T ss_dssp CEECTTCCEEEEEEEESSCTTTCCEEEEEEC-----TTSCEEEEEEECTTCCEEECGGGTTTEEEEE-CSSEEEEEESSC
T ss_pred EEEcCCCcEEEEEEecCcccCCCeEEEEEEC-----CCCCeEEEEEEecCCccccCCcccCCEEEEe-eCCEEEEEECCC
Confidence 557789999999987542 23445554311 01100111111111 10 01224555544 556778999999
Q ss_pred CCCCCEEEEEEEEcCcee----EEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCC--eEEEeeCC
Q psy16852 372 FPENAGLYSCTAVNPVGE----AVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGK 445 (579)
Q Consensus 372 ~~~d~G~Y~C~a~n~~g~----~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~ 445 (579)
+.+|+|.|.|.+.+..+. ......|.|.. ....+|.+........+..|+.++|.|.+.|.+++ .+.|+++|
T Consensus 83 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~--~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g 160 (215)
T 3nl4_H 83 TTEDTATYFCVRKYGSEWGGDLWGPGTLVTVSS--GQPKAPSVFPLAPCCGDTPSSTVTLGCLVKGYLPEPVTVTWNSGT 160 (215)
T ss_dssp CGGGCEEEEEEEECSSSSCEEEECCCEEEEECS--SCCBCCEEEEECCCTTCCC--CEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred CcccCEEEEEEEecCCCccceEEcCCEEEEEeC--CCcCCCEEEEecCCccccCCCcEEEEEEEeeeeCCCeEEEEeeCC
Confidence 999999999999987552 23344666653 22235666533333356689999999999986543 67899988
Q ss_pred EEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEE
Q psy16852 446 EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525 (579)
Q Consensus 446 ~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 525 (579)
..+........ ....|.|.. .....+...| |.|+|.|.|..|...
T Consensus 161 ~~~~~~~~~~~-----------------~~~~g~~~~-----------------~s~l~v~~~d-g~ytC~v~~~~~~~~ 205 (215)
T 3nl4_H 161 LTNGVRTFPSV-----------------RQSSGLYSL-----------------SSVVSVTSSS-QPVTCNVAHPATNTK 205 (215)
T ss_dssp BCTTEEECCCE-----------------ECTTSCEEE-----------------EEEEEECC----CCEEEEEEGGGTEE
T ss_pred EECCeEecCce-----------------ECCCCCEEE-----------------EEEEEEeccC-CEEEEEEEeCCCCcc
Confidence 65421111000 111222221 1223455667 999999999999877
Q ss_pred EEEEEE
Q psy16852 526 CTATLS 531 (579)
Q Consensus 526 ~~~~l~ 531 (579)
....|.
T Consensus 206 ~~~~l~ 211 (215)
T 3nl4_H 206 VDKTVA 211 (215)
T ss_dssp EEEECC
T ss_pred eEEecC
Confidence 666665
No 408
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=99.62 E-value=5.5e-15 Score=113.69 Aligned_cols=93 Identities=28% Similarity=0.517 Sum_probs=79.2
Q ss_pred CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS 485 (579)
Q Consensus 406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 485 (579)
.+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+..+.++.+.
T Consensus 12 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~---------------------------- 63 (107)
T 3irg_B 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFP---------------------------- 63 (107)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECC----------------------------
T ss_pred CCCeeEcCCccEEEeCCCeEEEEEEEeecCCCEEEEEECCeECCCCCcEEEE----------------------------
Confidence 3777877778889999999999999999999999999999988765554332
Q ss_pred cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.++..+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus 64 -------~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 104 (107)
T 3irg_B 64 -------ADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVL 104 (107)
T ss_dssp -------EETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred -------eCCCEEEEEEccCCHHhCEEEEEEEEcCCCcEEEEEEEEEE
Confidence 23445579999999999999999999999999999999875
No 409
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Probab=99.62 E-value=1.3e-14 Score=129.71 Aligned_cols=193 Identities=16% Similarity=0.224 Sum_probs=111.4
Q ss_pred EEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEE-ECCEEc--cCCCeEEEEECCCCeEEEEEcccCC
Q psy16852 297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWS-HDGTPM--KEGKEVTIYQDTDGLCKLAISEVFP 373 (579)
Q Consensus 297 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~-~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~ 373 (579)
.+.+..|..+.|.|.+. .+...+.|+.... |.....+... .+.... ....++.+..+..+.+.|.|.+++.
T Consensus 8 ~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~-----~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~ 81 (238)
T 1bec_A 8 NKVAVTGGKVTLSCQQT-NNHNNMYWYRQDT-----GHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATP 81 (238)
T ss_dssp EEEEETTCCEEEEEEES-SCCSEEEEEEECT-----TSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCG
T ss_pred eeEEeCCCcEEEEEEeC-CCCceEEEEEECC-----CCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCc
Confidence 35577899999999863 2334444432210 0000001010 110000 0123444433334567999999999
Q ss_pred CCCEEEEEEEEcCce-----eEEEEEEEEEEecccCCCCCeeec-CCCceeeecCCCeEEEEEEEee-CCC-eEEEeeCC
Q psy16852 374 ENAGLYSCTAVNPVG-----EAVAAATLAVEEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGR-PTP-SICWYRGK 445 (579)
Q Consensus 374 ~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~-p~~-~v~W~~~~ 445 (579)
+|+|.|.|.+.+..+ .......|.|........+|.+.. .+....+..|+.++|.|.+.|. |.+ .+.|+++|
T Consensus 82 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g 161 (238)
T 1bec_A 82 SQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNG 161 (238)
T ss_dssp GGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETT
T ss_pred ccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECC
Confidence 999999999998741 112334677765332233566653 3344456689999999999986 655 99999999
Q ss_pred EEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeeccccc-ceeEEEEEEeCCee
Q psy16852 446 EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQ-IGDVTCRAENVAGS 523 (579)
Q Consensus 446 ~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~ 523 (579)
..+..+.+.. ........|.|... +.|.|.....+| .|.|+|.|.|....
T Consensus 162 ~~~~~~~~~~--------------~~~~~~~~g~~~~~--------------s~L~i~~~~~~d~~~~ytC~v~~~~l~ 212 (238)
T 1bec_A 162 KEVHSGVSTD--------------PQAYKESNYSYCLS--------------SRLRVSATFWHNPRNHFRCQVQFHGLS 212 (238)
T ss_dssp EEECTTEEEC--------------SSCEEEETTEEEEE--------------EEECCCHHHHTCTTCEEEEEEEECCCC
T ss_pred EECCCceecc--------------cceEeCCCCCEEEE--------------EEEEEcHHHhccCCCeEEEEEEcCCCC
Confidence 9885432100 00011122344322 337777666655 67899999997443
No 410
>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B
Probab=99.62 E-value=2.9e-15 Score=135.54 Aligned_cols=175 Identities=13% Similarity=0.205 Sum_probs=106.8
Q ss_pred ccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--E---Ee-------------cCCCCEEEEEe--CCEEEEEEcCC
Q psy16852 12 KIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--T---EL-------------HATEHYLITTV--ESVSTLEIINP 69 (579)
Q Consensus 12 ~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~---~~-------------~~~~~~~~~~~--~~~~~L~i~~~ 69 (579)
.|..+.+.+|++|+|.|.+.+.. ...+.|||.. . .+ ....++.+... ....+|+|.++
T Consensus 6 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 85 (263)
T 3iu4_H 6 ESGPGLVAPSQSLSITCTVSGFSLSRYSVHWVRQPPGKGLEWLGMIWGGGSTDYNSALKSRLSISKDNSKSQVFLKMNSL 85 (263)
T ss_dssp EECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCEEECGGGTTCEEEEEEGGGTEEEEEECSC
T ss_pred CCCCEEEcCCCCEEEEEEeccccCCceEEEEEEECCCCCcEEEEEEeCCCcEeeCcccCCCEEEEecCCCCEEEEEECCC
Confidence 45678999999999999997533 4579999832 1 11 01245555433 35678999999
Q ss_pred CCCCCEEEEEEEEcCC-----e---eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecC--CeEEE
Q psy16852 70 TKEDIGVYTCKATNIG-----G---VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT--PSICW 139 (579)
Q Consensus 70 ~~~d~G~Y~C~~~~~~-----g---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W 139 (579)
+.+|+|.|+|.+.+.. + .....+.+.|...+ ..+|.+........+.+|+.++|.|.+.++++ +.++|
T Consensus 86 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~t~l~V~~~~--~~~P~v~~~~~~~~~~~g~~~~L~C~~~~~~P~~~~v~W 163 (263)
T 3iu4_H 86 QTDDTAMYYCARSGVREGRAQAWFAYWGQGTLVTVSAAS--TKGPSVFPLAPSSKGSTSGTAALGCLVKDYFPEPVTVSW 163 (263)
T ss_dssp CGGGCEEEEEEEEECC---CEEEEEEECCCEEEEECSSC--CBCCEEEEECCCCCC----EEEEEEEEEEEBSSCCEEEE
T ss_pred CHHHCEEEEEEEEeCCCCccccccceeCCceEEEEeccc--CCCCEEEEccCccccccCCcEEEEEEEEeEeCCceEEEE
Confidence 9999999999998753 1 11123456664321 23444442222223457999999999977543 68999
Q ss_pred EECCEEccCCCC-ceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEEE
Q psy16852 140 YRGKEEILPDNG-HTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAECR 192 (579)
Q Consensus 140 ~~~~~~~~~~~~-~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 192 (579)
++..+..... ...... .++ .+.|.|.....+| |.|+|.+.|..+.....
T Consensus 164 --~~~~~~~~~~~~~~~~~-~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~ 217 (263)
T 3iu4_H 164 --NSGALTSGVHTFPAVLQ-SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD 217 (263)
T ss_dssp --GGGTBCTTEEECCCEEC-TTSCEEEEEEEEEETTHHHH-CCCEEEEEEGGGTEEEE
T ss_pred --CCcccCCceeecCceEC-CCCCEEEEEEEEECHhHcCC-CEEEEEEEECCCCccee
Confidence 4333221100 000011 111 2468888888888 99999999987754443
No 411
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Probab=99.62 E-value=1.4e-15 Score=132.80 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=99.6
Q ss_pred ccCCcEEEEEEEEeec----CCeEEEEECCEEccCCCCceEEEcCCCCe----EEEEECcCCCCCCeEEEEEEEcCCcee
Q psy16852 118 EAQSPATLKATVTGRP----TPSICWYRGKEEILPDNGHTMEFNPTTGE----CVLSISEATPQDEAVYSVKAVNTFGRA 189 (579)
Q Consensus 118 ~~g~~~~l~C~~~~~p----~~~i~W~~~~~~~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (579)
.+|+.++|.|.+.+.+ .+.|.|++++..+.......... ..++. ..|.|.....+|+|.|+|.+.|..+..
T Consensus 16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~-~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~ 94 (207)
T 1l6x_A 16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREE-QYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 94 (207)
T ss_dssp CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEE-CTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSS
T ss_pred ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCcee-ccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCc
Confidence 6899999999998875 25999999998765432111111 11221 223444444455999999999987754
Q ss_pred EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCC-eEEEEECCEEeccCc---eEEe-CC-
Q psy16852 190 ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTP-EVKWFKNGKEIVSKD---IETK-DN- 262 (579)
Q Consensus 190 ~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~i~~~~---~~~~-~~- 262 (579)
.....+.+. ..+..+|.+...........|..+.|.|.+.|. |++ .+.|+++|..+.... .... ++
T Consensus 95 ~~~~~v~~~-------~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt 167 (207)
T 1l6x_A 95 PIEKTISKA-------KGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGS 167 (207)
T ss_dssp CEEEEECCC-------CSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSC
T ss_pred ceEEEeccC-------CCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCCCC
Confidence 222222110 012245554433222222345669999999984 543 999999999876321 1111 11
Q ss_pred ---eEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852 263 ---VTKLVIKQTTKKTTGKYEIRVVNEAGE 289 (579)
Q Consensus 263 ---~~~l~i~~~~~~d~G~y~C~a~n~~g~ 289 (579)
.+.|.+.....+|.|.|+|.|.|....
T Consensus 168 ~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~ 197 (207)
T 1l6x_A 168 FFLYSKLTVDKSRWQQGNVFSCSVMHEALH 197 (207)
T ss_dssp EEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred EEEEEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence 134556555556899999999997643
No 412
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=99.62 E-value=7.3e-15 Score=121.08 Aligned_cols=98 Identities=35% Similarity=0.530 Sum_probs=86.6
Q ss_pred cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEe-CCEEEEEEcCCCCCCCEEEEEEE
Q psy16852 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTV-ESVSTLEIINPTKEDIGVYTCKA 81 (579)
Q Consensus 3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~ 81 (579)
...||.|...|.++.+.+|+.++|.|.+.|.|.+.+.|||+|..+....++.+... .+...|.|.+++.+|+|.|+|.|
T Consensus 38 v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 117 (154)
T 1fhg_A 38 PHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKA 117 (154)
T ss_dssp CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEE
Confidence 34689999999999999999999999999999999999999999988777776654 34679999999999999999999
Q ss_pred EcCCeeeEEEEEEEEEecc
Q psy16852 82 TNIGGVATCSANLIVLEKE 100 (579)
Q Consensus 82 ~~~~g~~~~~~~~~v~~~~ 100 (579)
.|..|.....+.|.|...+
T Consensus 118 ~N~~G~~~~~~~l~V~~~p 136 (154)
T 1fhg_A 118 VNSLGEATCTAELLVETMG 136 (154)
T ss_dssp EETTEEEEEEEEEEEECC-
T ss_pred EECCCeEEEEEEEEEeCcC
Confidence 9999998888889887543
No 413
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=7.4e-16 Score=119.23 Aligned_cols=98 Identities=31% Similarity=0.517 Sum_probs=85.7
Q ss_pred cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEe-CCEEEEEEcCCCCCCCEEEEEEE
Q psy16852 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTV-ESVSTLEIINPTKEDIGVYTCKA 81 (579)
Q Consensus 3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~ 81 (579)
..++|.|...|.++.+.+|+.++|.|.+.+.|.+.+.|+++|..+........... .+..+|.|.+++.+|+|.|+|.|
T Consensus 6 ~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 85 (110)
T 2dm3_A 6 SGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIA 85 (110)
T ss_dssp CCCCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEE
T ss_pred CCCCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEE
Confidence 35799999999999999999999999999999999999999998877665554433 33578999999999999999999
Q ss_pred EcCCeeeEEEEEEEEEecc
Q psy16852 82 TNIGGVATCSANLIVLEKE 100 (579)
Q Consensus 82 ~~~~g~~~~~~~~~v~~~~ 100 (579)
.|..|.....+.|.|..++
T Consensus 86 ~n~~g~~~~~~~l~V~~~p 104 (110)
T 2dm3_A 86 TNRAGQNSFSLELVVAAKE 104 (110)
T ss_dssp ECSSCEEEECCEEEEECCC
T ss_pred ECCCCEEEEEEEEEEeCCC
Confidence 9999998888999998764
No 414
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=110.09 Aligned_cols=81 Identities=20% Similarity=0.295 Sum_probs=70.1
Q ss_pred ccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEE
Q psy16852 12 KIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCS 91 (579)
Q Consensus 12 ~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~ 91 (579)
++.++.+.+|+++.|.|.+.+ |.+.++|||||..+..+.++.+...+....|.|.+++.+|+|.|+|.|.| ...+
T Consensus 2 ~lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~ 76 (84)
T 2lu7_A 2 HMTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ----DSRI 76 (84)
T ss_dssp -CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTT----TCEE
T ss_pred CCeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECC----EEEE
Confidence 467899999999999999965 77899999999999999999888888888999999999999999999855 3455
Q ss_pred EEEEEE
Q psy16852 92 ANLIVL 97 (579)
Q Consensus 92 ~~~~v~ 97 (579)
+.|.|.
T Consensus 77 a~l~V~ 82 (84)
T 2lu7_A 77 FLVSVE 82 (84)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 667764
No 415
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=119.15 Aligned_cols=96 Identities=26% Similarity=0.366 Sum_probs=82.5
Q ss_pred CcCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecC-CCCEEEEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy16852 2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA-TEHYLITTVESVSTLEIINPTKEDIGVYTCK 80 (579)
Q Consensus 2 ~~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 80 (579)
....||.|...|.++.+.+|+.++|.|.+.|.|.+.+.|+|+|..+.. ..++.... . .+|.|.+++.+|+|.|+|.
T Consensus 4 ~~~~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~-~--~~L~i~~v~~~D~G~Y~C~ 80 (118)
T 2eo9_A 4 GSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLE-N--GVLQIRYAKLGDTGRYTCI 80 (118)
T ss_dssp SCCCSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEE-T--TEEEEESCCGGGCCCEEEE
T ss_pred CCCCCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEcc-C--CEEEEccCCcCCCEEEEEE
Confidence 346799999999999999999999999999999999999999998864 44444432 2 3799999999999999999
Q ss_pred EEcCCeeeEEEEEEEEEecc
Q psy16852 81 ATNIGGVATCSANLIVLEKE 100 (579)
Q Consensus 81 ~~~~~g~~~~~~~~~v~~~~ 100 (579)
|.|..|.....+.|.|.+.+
T Consensus 81 a~n~~g~~~~~~~l~V~~~~ 100 (118)
T 2eo9_A 81 ASTPSGEATWSAYIEVQEFG 100 (118)
T ss_dssp EECSSCEEEEECCEEEECCS
T ss_pred EEcCCCcEEEEEEEEEEeCC
Confidence 99999998888888888654
No 416
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.2e-15 Score=118.13 Aligned_cols=111 Identities=18% Similarity=0.251 Sum_probs=85.8
Q ss_pred CCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCC-CCeeEEEcCCCCeEEEEEccccCCCceeEEEE
Q psy16852 405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPD-NGHTMEFNPTTGECVLSISEATPQDEAVYSVK 483 (579)
Q Consensus 405 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 483 (579)
..+|.+...+....+.+|+.++|.|.+.|.|.+.+.|++++..+... .++.+..
T Consensus 6 ~~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~------------------------- 60 (118)
T 2eo9_A 6 SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLE------------------------- 60 (118)
T ss_dssp CCSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEE-------------------------
T ss_pred CCCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEcc-------------------------
Confidence 35788888888889999999999999999999999999999887542 2222110
Q ss_pred eecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEeeCCcccccccCCccccCCCceEEecCC
Q psy16852 484 ASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQ 560 (579)
Q Consensus 484 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~v~~~p~~~~~~~~~~~~~g~ 560 (579)
.+.|.|.+++.+|+|.|+|.|.|..|....++.|.|.. ...|.+...+.+.++..|.
T Consensus 61 -------------~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~-------~~~p~~~~~~~~~~~~~G~ 117 (118)
T 2eo9_A 61 -------------NGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQE-------FGVPVQPPRPTDPNLIPSA 117 (118)
T ss_dssp -------------TTEEEEESCCGGGCCCEEEEEECSSCEEEEECCEEEEC-------CSCCCCCCCCCCCCCCCCC
T ss_pred -------------CCEEEEccCCcCCCEEEEEEEEcCCCcEEEEEEEEEEe-------CCCCccCCCCCCCccCCCC
Confidence 12599999999999999999999999999999999862 2334444555555555553
No 417
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=99.61 E-value=1.5e-14 Score=108.76 Aligned_cols=89 Identities=15% Similarity=0.302 Sum_probs=74.7
Q ss_pred eecCCCceeeecCCCeEEEEEEEee-CCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecce
Q psy16852 410 FTKPLKPVIAEAQSPATLKATVTGR-PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTE 488 (579)
Q Consensus 410 ~~~~~~~~~~~~g~~~~l~C~~~g~-p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 488 (579)
+..++.+..+.+|+.++|.|.+.|. |.|.+.|++++..+..+.++.+..
T Consensus 4 v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~------------------------------ 53 (97)
T 2bk8_A 4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITY------------------------------ 53 (97)
T ss_dssp EECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEE------------------------------
T ss_pred eeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEE------------------------------
Confidence 3445667889999999999999997 999999999999887666655432
Q ss_pred eeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 489 TKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 489 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.+..+.|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 54 -----~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 93 (97)
T 2bk8_A 54 -----EDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVK 93 (97)
T ss_dssp -----ETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEET
T ss_pred -----cCCeEEEEEecCChhhCeEEEEEEECCCCeEeEEEEEEEE
Confidence 2334569999999999999999999999999999999885
No 418
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.2e-15 Score=112.52 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=74.9
Q ss_pred CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS 485 (579)
Q Consensus 406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 485 (579)
.+|.|..++....+.+|+.+.|.|.+ .|.|.+.|+|+|..+..+.++.+..
T Consensus 6 ~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~--------------------------- 56 (100)
T 2yuz_A 6 SGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQ--------------------------- 56 (100)
T ss_dssp CCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEE---------------------------
T ss_pred CCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEE---------------------------
Confidence 47888888899999999999999999 8999999999999998777666543
Q ss_pred cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
++..+.|.|.++..+|+|.|+|.|.|. ....++.|.|.
T Consensus 57 --------~~~~~~L~I~~v~~~D~G~Y~C~a~N~--~~~~~a~L~V~ 94 (100)
T 2yuz_A 57 --------KGRIHKLVIANALTEDEGDYVFAPDAY--NVTLPAKVHVI 94 (100)
T ss_dssp --------CSSEEEEEESSCCGGGCSEEEEEESSS--CCCEEEEEEEE
T ss_pred --------eCCEEEEEECCCChhhCEEEEEEEcCC--CeeEEEEEEEe
Confidence 344566999999999999999999998 55667777765
No 419
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.2e-15 Score=113.04 Aligned_cols=91 Identities=32% Similarity=0.551 Sum_probs=79.3
Q ss_pred cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
...||.|...|.+..+.+|+.++|.|.+.+.|.+.+.|+++|..+..... ........|.|.+++.+|+|.|+|.|.
T Consensus 8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~---~~~~~~~~L~i~~v~~~D~G~Y~C~a~ 84 (99)
T 2yr3_A 8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS---TCEAGVAELHIQDALPEDHGTYTCLAE 84 (99)
T ss_dssp CCEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCC---EEETTEEEEEECSCCTTCCBCEEEEEE
T ss_pred cccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccce---EeeCCeEEEEECCCChhhCEEEEEEEE
Confidence 34689999999999999999999999999999999999999998875543 234566899999999999999999999
Q ss_pred cCCeeeEEEEEEEE
Q psy16852 83 NIGGVATCSANLIV 96 (579)
Q Consensus 83 ~~~g~~~~~~~~~v 96 (579)
|..|.....+.|.|
T Consensus 85 N~~g~~~~~~~l~V 98 (99)
T 2yr3_A 85 NALGQVSCSAWVTV 98 (99)
T ss_dssp CSSCEEEEECCEEE
T ss_pred ECCCeEEEEEEEEE
Confidence 99998877777765
No 420
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=99.61 E-value=3.4e-15 Score=111.69 Aligned_cols=89 Identities=18% Similarity=0.368 Sum_probs=77.7
Q ss_pred cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
+.-||.|...|.++.+.+|+.++|.|.+.+.| +.+.|+|+|..+....++... ...|.|.+++.+|+|.|+|.|.
T Consensus 6 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~ 80 (95)
T 2ckn_A 6 QAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT----GEEVEVRDSIPADSGLYACVTS 80 (95)
T ss_dssp SSCSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC----SSEEEESSCCGGGSEEEEEEEE
T ss_pred CCCCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe----CCEEEECCCChHHCEEEEEEec
Confidence 45678899999999999999999999999887 799999999998876665443 3589999999999999999999
Q ss_pred cCCeeeEEEEEEEE
Q psy16852 83 NIGGVATCSANLIV 96 (579)
Q Consensus 83 ~~~g~~~~~~~~~v 96 (579)
|..|.....+.|.|
T Consensus 81 n~~g~~~~~~~l~V 94 (95)
T 2ckn_A 81 SPSGSDTTYFSVNV 94 (95)
T ss_dssp ETTEEEEEEEEEEE
T ss_pred cCCCcEEEEEEEEE
Confidence 99998888777766
No 421
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=99.61 E-value=8.7e-15 Score=108.24 Aligned_cols=88 Identities=18% Similarity=0.256 Sum_probs=72.4
Q ss_pred CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS 485 (579)
Q Consensus 406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 485 (579)
.+|.|..++.+..+.+|+.++|.|.+.+ |.+.+.|+|+|..+..+.++.+..
T Consensus 4 ~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~--------------------------- 55 (93)
T 1waa_A 4 ALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIE--------------------------- 55 (93)
T ss_dssp CCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEE---------------------------
T ss_pred CCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEE---------------------------
Confidence 5788888899999999999999999985 567899999999998776665432
Q ss_pred cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
++..+.|.|.+++.+|+|.|+|.|.|. ..++.|.|.
T Consensus 56 --------~g~~~~L~I~~v~~~D~G~Y~C~a~n~----~~sa~L~V~ 91 (93)
T 1waa_A 56 --------DGKKHILILHNCQLGMTGEVSFQAANT----KSAANLKVK 91 (93)
T ss_dssp --------ETTEEEEEECSCCGGGCEEEEEEETTE----EEEEEEEEE
T ss_pred --------ECCEEEEEECCCChhhCEEEEEEECCC----cEEEEEEEE
Confidence 445567999999999999999999874 456777765
No 422
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Probab=99.61 E-value=7.2e-15 Score=132.81 Aligned_cols=195 Identities=14% Similarity=0.119 Sum_probs=117.2
Q ss_pred EEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEcc---CCC-eEEEEECCCCeEEEEEcccC
Q psy16852 297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMK---EGK-EVTIYQDTDGLCKLAISEVF 372 (579)
Q Consensus 297 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~---~~~-~~~~~~~~~~~~~l~i~~~~ 372 (579)
.+.+..|..+.|.|.....+...+.|+.. ..+.+...+.+..++.... ... ++....+.... |.|.+++
T Consensus 10 ~v~v~~G~~v~L~C~~~~~~~~~v~W~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~--L~I~~v~ 82 (253)
T 3to4_D 10 WRLVPRGQAVNLRCILKNSQYPWMSWYQQ-----DLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE--LRLQVAN 82 (253)
T ss_dssp EEEEESSCCEEEEEECSCTTCCCEEEEEE-----ETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC--CEEEEES
T ss_pred eEEEeCCCcEEEEEEeCCCCcceEEEEEE-----CCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe--EEEccCC
Confidence 35577899999999876666666666542 1122222233332221100 011 44444333322 9999999
Q ss_pred CCCCEEEEEEEEcCce------eEEEEEEEEEEecccCCCCCeeec-CCCceeeecCCCeEEEEEEEe-eCCC-eEEEee
Q psy16852 373 PENAGLYSCTAVNPVG------EAVAAATLAVEEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTG-RPTP-SICWYR 443 (579)
Q Consensus 373 ~~d~G~Y~C~a~n~~g------~~~~~~~l~v~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g-~p~~-~v~W~~ 443 (579)
.+|+|.|.|.+.+..+ .......|.|........+|.+.. .+....+..|+.++|.|.+.| .|.+ .+.|++
T Consensus 83 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k 162 (253)
T 3to4_D 83 MSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV 162 (253)
T ss_dssp CSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred hhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEE
Confidence 9999999999987643 222344677765333334565543 233334456789999999998 6666 899999
Q ss_pred CCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeeccccc-ceeEEEEEEeCCe
Q psy16852 444 GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQ-IGDVTCRAENVAG 522 (579)
Q Consensus 444 ~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g 522 (579)
+|..+........ .......+...|.|... +.|.|.....+| .|.|+|.|.|..-
T Consensus 163 ~g~~l~~~~~~~~----------~~~~~~~~~~~g~~~~~--------------s~l~i~~~~~~d~~~~ytC~v~h~~l 218 (253)
T 3to4_D 163 NGKEVHSGVSTDP----------QPLKEQPALNDSRYALS--------------SRLRVSATFWQNPRNHFRCQVQFYGL 218 (253)
T ss_dssp TTEEECTTEEECS----------SCEESSTTCTTCCEEEE--------------EEEEEEHHHHTCTTCEEEEEEEECCB
T ss_pred CCEECCCceeccc----------ccccccccCCCCCEEEE--------------EEEEECHHHhccCCCEEEEEEEeCCC
Confidence 9998854321100 00111112244555443 348899888888 7799999999743
No 423
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=99.60 E-value=8.5e-15 Score=112.88 Aligned_cols=95 Identities=21% Similarity=0.282 Sum_probs=77.9
Q ss_pred CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeC-------CEEEEEEcCCCCCCCEE
Q psy16852 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVE-------SVSTLEIINPTKEDIGV 76 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~-------~~~~L~i~~~~~~d~G~ 76 (579)
.+||+|.+ .. ...+..+.|.|.+.|.|.|.|+|+|||..+..+.+....... ....|.|.+++.+|+|.
T Consensus 2 ~~pP~I~l-~~---~~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 77 (126)
T 1he7_A 2 HMPASVQL-HT---AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGN 77 (126)
T ss_dssp CCCCCCCC-CC---CCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEE
T ss_pred CCCCEEEc-cC---CccCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEE
Confidence 47888722 22 337789999999999999999999999999887776544332 24789999999999999
Q ss_pred EEEEEEcCCeeeEEEEEEEEEecccC
Q psy16852 77 YTCKATNIGGVATCSANLIVLEKEES 102 (579)
Q Consensus 77 Y~C~~~~~~g~~~~~~~~~v~~~~~~ 102 (579)
|+|.|.|..|....++.+.|...|..
T Consensus 78 YtC~A~N~~G~~~~t~~l~v~~~P~~ 103 (126)
T 1he7_A 78 YTLLAANPFGQASASIMAAFMDNPFE 103 (126)
T ss_dssp EEEEEEETTEEEEEEEEECCCSCTTS
T ss_pred EEEEEEECCCeEEEEEEEEEEcCCCC
Confidence 99999999999999999988876543
No 424
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=99.60 E-value=1.4e-14 Score=119.34 Aligned_cols=94 Identities=27% Similarity=0.502 Sum_probs=79.3
Q ss_pred CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS 485 (579)
Q Consensus 406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 485 (579)
.+|.+...+....+..|+.++|.|.+.|.|.|.+.|++++..+....++.+..+
T Consensus 40 ~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~-------------------------- 93 (154)
T 1fhg_A 40 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYD-------------------------- 93 (154)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEC--------------------------
T ss_pred CCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEEC--------------------------
Confidence 477888777888999999999999999999999999999999877666554331
Q ss_pred cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
....+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 94 --------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 133 (154)
T 1fhg_A 94 --------EEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133 (154)
T ss_dssp --------TTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred --------CCCeEEEEECCCChhcCEEEEEEEEECCCeEEEEEEEEEe
Confidence 1123469999999999999999999999999999999875
No 425
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.60 E-value=1.1e-14 Score=110.44 Aligned_cols=95 Identities=21% Similarity=0.319 Sum_probs=77.2
Q ss_pred CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS 485 (579)
Q Consensus 406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 485 (579)
.+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.......+
T Consensus 4 ~pP~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~----------------------------- 54 (100)
T 3irg_A 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRF----------------------------- 54 (100)
T ss_dssp EEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTE-----------------------------
T ss_pred CCCeeecCCCcEEEcCCCcEEEEEEEEEcCCCceEEEECCEEeecCCCCEE-----------------------------
Confidence 367777777778899999999999999999999999999988853321111
Q ss_pred cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.+..++..+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|+
T Consensus 55 ----~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 98 (100)
T 3irg_A 55 ----HIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIR 98 (100)
T ss_dssp ----EEEECSSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ----EEEecCCEEEEEEeecCcccCEEEEEEEEeCCCcEEEEEEEEEE
Confidence 12223445679999999999999999999999999999999875
No 426
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.60 E-value=1.7e-15 Score=116.93 Aligned_cols=94 Identities=28% Similarity=0.352 Sum_probs=76.0
Q ss_pred CCCccccccCceeeeCCCCEEEEEEEEee---CCCeeEEEECCEE-ec--CCCCEEEEEe--C----CEEEEEEcCCCCC
Q psy16852 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGH---PLPTMTWQKDGTE-LH--ATEHYLITTV--E----SVSTLEIINPTKE 72 (579)
Q Consensus 5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~---~~~~v~W~~~g~~-~~--~~~~~~~~~~--~----~~~~L~i~~~~~~ 72 (579)
.-|.|+..|.++.|.+|++++|.|.+.+. |.|.|.|||+... +. ...++.+... . ...+|+|.+++.+
T Consensus 6 ~~~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~ 85 (126)
T 2dav_A 6 SGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDN 85 (126)
T ss_dssp SSCSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTT
T ss_pred cccEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcc
Confidence 34779999999999999999999999875 7889999997421 11 1344444321 1 2588999999999
Q ss_pred CCEEEEEEEEcCCeeeEEEEEEEEEe
Q psy16852 73 DIGVYTCKATNIGGVATCSANLIVLE 98 (579)
Q Consensus 73 d~G~Y~C~~~~~~g~~~~~~~~~v~~ 98 (579)
|+|.|+|+|.|..|..+..+.|+|.+
T Consensus 86 DaG~Y~Cevsn~~g~~~~~~~L~V~~ 111 (126)
T 2dav_A 86 FAGNYRCEVTYKDKFDSCSFDLEVHE 111 (126)
T ss_dssp SCEEEEEEEECSSCEEEECCEEEEEC
T ss_pred cCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence 99999999999999999999999987
No 427
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.59 E-value=5.7e-15 Score=112.46 Aligned_cols=91 Identities=22% Similarity=0.264 Sum_probs=78.3
Q ss_pred CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCC--CEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE--HYLITTVESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
.|+.|...|.++.+.+|++++|.|.+.+ +.+.+.|||+|..+.... ++.+...+....|.|.+++.+|+|.|+|.|.
T Consensus 6 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 84 (103)
T 1x44_A 6 SGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTT 84 (103)
T ss_dssp SSCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEET
T ss_pred CCceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEEC
Confidence 3555888999999999999999999977 668999999999998777 6788877788999999999999999999997
Q ss_pred cCCeeeEEEEEEEEEecc
Q psy16852 83 NIGGVATCSANLIVLEKE 100 (579)
Q Consensus 83 ~~~g~~~~~~~~~v~~~~ 100 (579)
| ....+.|.|...+
T Consensus 85 n----~~~~~~l~V~~~p 98 (103)
T 1x44_A 85 G----GQSSAKLSVDLKS 98 (103)
T ss_dssp T----EEEEEEEEEECCC
T ss_pred C----CcEEEEEEEeCCC
Confidence 6 4666778887653
No 428
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.9e-15 Score=113.86 Aligned_cols=93 Identities=15% Similarity=0.238 Sum_probs=80.4
Q ss_pred CCCCccccccCceeeeCCCCEEEEEEEEeeCC-CeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPL-PTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~-~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
..||.|+..|.++.+.+|+.++|.|.+.+.+. +.+.|||||..+..+.++.+...+...+|.|.+++.+|+|.|+|.+.
T Consensus 6 ~~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 85 (104)
T 2eny_A 6 SGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVR 85 (104)
T ss_dssp CCCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEET
T ss_pred cCCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEEC
Confidence 35778999999999999999999999987764 47999999999988888888888888899999999999999999984
Q ss_pred cCCeeeEEEEEEEEEecc
Q psy16852 83 NIGGVATCSANLIVLEKE 100 (579)
Q Consensus 83 ~~~g~~~~~~~~~v~~~~ 100 (579)
+ ...++.|.|.++|
T Consensus 86 ~----~~~~a~L~V~~~p 99 (104)
T 2eny_A 86 G----LTSKASLIVRERS 99 (104)
T ss_dssp T----EEEEECEEEECCC
T ss_pred C----eeEEEEEEEeCCC
Confidence 3 5667888887643
No 429
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...
Probab=99.59 E-value=2.7e-14 Score=128.86 Aligned_cols=150 Identities=15% Similarity=0.210 Sum_probs=94.8
Q ss_pred CeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCc---eeEEEEEEEEEEecccCCCCCeeec-CCCceeeecCCCeEE
Q psy16852 352 KEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPV---GEAVAAATLAVEEKEESGEAPKFTK-PLKPVIAEAQSPATL 427 (579)
Q Consensus 352 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~---g~~~~~~~l~v~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l 427 (579)
.++.......+...|.|.+++.+|+|.|.|.+.+.. ........|.|........+|.+.. .+....+..|+.++|
T Consensus 64 ~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L 143 (252)
T 1oga_E 64 EGYSVSREKKESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATL 143 (252)
T ss_dssp TTEEECCSSTTBCCEEECSCCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEE
T ss_pred CcEEEEecCCCEEEEEECcCChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEE
Confidence 344443333445689999999999999999999861 1222334577765322234666653 233344567999999
Q ss_pred EEEEEee-CCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeec
Q psy16852 428 KATVTGR-PTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKI 505 (579)
Q Consensus 428 ~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~ 505 (579)
.|.+.|. |.+ .|.|+++|..+..+..... ...........|.|... +.|.|...
T Consensus 144 ~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~----------~~~~~~~~~~~gt~~~~--------------s~L~i~~~ 199 (252)
T 1oga_E 144 VCLATGFYPDHVELSWWVNGKEVHSGVSTDP----------QPLKEQPALNDSRYSLS--------------SRLRVSAT 199 (252)
T ss_dssp EEEEEEEBSSCEEEEEEETTEEECSSEEECS----------SCEESCTTSTTCCEEEE--------------EEEEEEHH
T ss_pred EEEEeeEcCCCcEEEEEECCEECCCCccccc----------ccccccccCCCCCEEEE--------------EEEEECHH
Confidence 9999986 654 9999999988754311000 00001122344555433 34888887
Q ss_pred ccc-cceeEEEEEEeCCeeEE
Q psy16852 506 TRD-QIGDVTCRAENVAGSVT 525 (579)
Q Consensus 506 ~~~-d~G~Y~C~a~n~~g~~~ 525 (579)
..+ |.|.|+|.|.|..+...
T Consensus 200 ~~~d~~~~ytC~v~~~~l~~~ 220 (252)
T 1oga_E 200 FWQNPRNHFRCQVQFYGLSEN 220 (252)
T ss_dssp HHTCTTCEEEEEEEECCBCTT
T ss_pred HhccCCCEEEEEEEcCCCCCC
Confidence 764 57889999999866543
No 430
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.3e-15 Score=113.21 Aligned_cols=92 Identities=20% Similarity=0.341 Sum_probs=81.2
Q ss_pred CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
..||.|...|.++.+.+|+.++|.|.+.+ +.+.+.|+|+|..+....++.+...+....|.|.+++.+|+|.|+|.+.|
T Consensus 6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 84 (103)
T 2edf_A 6 SGPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA 84 (103)
T ss_dssp CCCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS
T ss_pred CCCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc
Confidence 46899999999999999999999999987 77799999999999888888888888788999999999999999999988
Q ss_pred CCeeeEEEEEEEEEecc
Q psy16852 84 IGGVATCSANLIVLEKE 100 (579)
Q Consensus 84 ~~g~~~~~~~~~v~~~~ 100 (579)
....+.|.|..++
T Consensus 85 ----~~~~~~l~V~~~p 97 (103)
T 2edf_A 85 ----SKSTASLHVEEKA 97 (103)
T ss_dssp ----CEEEEEEEECCCS
T ss_pred ----CCcEEEEEEeCCC
Confidence 3566778887553
No 431
>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*
Probab=99.59 E-value=1.1e-14 Score=131.62 Aligned_cols=179 Identities=11% Similarity=0.189 Sum_probs=110.3
Q ss_pred cccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--E---Ee--------------cCCCCEEEEEe--CCEEEEEEc
Q psy16852 11 EKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--T---EL--------------HATEHYLITTV--ESVSTLEII 67 (579)
Q Consensus 11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~---~~--------------~~~~~~~~~~~--~~~~~L~i~ 67 (579)
..|..+.+.+|++|+|.|.+.+.. ...+.|||.. . .+ ....++..... .+..+|+|.
T Consensus 28 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 107 (256)
T 3sob_H 28 VESGGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMN 107 (256)
T ss_dssp EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred EecCcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEEC
Confidence 345678899999999999997532 3579999832 1 11 01245555433 356789999
Q ss_pred CCCCCCCEEEEEEEEcCCe-----------eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-c-C
Q psy16852 68 NPTKEDIGVYTCKATNIGG-----------VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-P-T 134 (579)
Q Consensus 68 ~~~~~d~G~Y~C~~~~~~g-----------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~ 134 (579)
+++.+|+|.|+|.+.+..+ .....+.+.|...+ ..+|.+........+.+|+.++|.|.+.+. | +
T Consensus 108 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~ 185 (256)
T 3sob_H 108 SLRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSAS--TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP 185 (256)
T ss_dssp SCCGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSC--CBCCEEEEECCC-----TTEEEEEEEEEEEBSSC
T ss_pred CCCcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCC--CCCCEEEEECCCcccccCCcEEEEEEEEEEECCC
Confidence 9999999999999986431 12233456665322 234444432233345689999999999774 4 3
Q ss_pred CeEEEEECCEEccCCCCc-eEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy16852 135 PSICWYRGKEEILPDNGH-TMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAECRANL 195 (579)
Q Consensus 135 ~~i~W~~~~~~~~~~~~~-~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~ 195 (579)
..+.| ++..+...... ..... .++ .+.|.|.....+| |.|+|.+.|..+.......+
T Consensus 186 ~~v~W--~~~~~~~~~~~~~~~~~-~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~ 247 (256)
T 3sob_H 186 VTVSW--NSGALTSGVHTFPAVLQ-SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV 247 (256)
T ss_dssp CEEEE--GGGTBCTTEEECCCEEC-TTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEEC
T ss_pred eEEEE--CCcccCCCeEeCCceeC-CCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEe
Confidence 58999 44333211000 00011 111 2468899999999 99999999987665544444
No 432
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.8e-15 Score=113.65 Aligned_cols=95 Identities=32% Similarity=0.476 Sum_probs=80.3
Q ss_pred CcCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecC-CCCEEEEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy16852 2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA-TEHYLITTVESVSTLEIINPTKEDIGVYTCK 80 (579)
Q Consensus 2 ~~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 80 (579)
....||.|...|.++.+.+|+.++|.|.+.+.|.+.+.|+++|..+.. ..++.. ....+|.|.+++.+|+|.|+|.
T Consensus 4 ~~~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~ 80 (100)
T 2edj_A 4 GSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATI---QEQGTLQIKNLRISDTGTYTCV 80 (100)
T ss_dssp SCCSSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEE---CTTCCEEEESCCTTTCCEEEEE
T ss_pred CCCCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEE---cCCCEEEEccCCcccCEEEEEE
Confidence 345789999999999999999999999999999999999999998873 333322 2235799999999999999999
Q ss_pred EEcCCeeeEEEEEEEEEec
Q psy16852 81 ATNIGGVATCSANLIVLEK 99 (579)
Q Consensus 81 ~~~~~g~~~~~~~~~v~~~ 99 (579)
|.|..|.....+.|.|.++
T Consensus 81 a~n~~g~~~~~~~l~V~~~ 99 (100)
T 2edj_A 81 ATSSSGETSWSAVLDVTES 99 (100)
T ss_dssp EECSSCCCBCCEEEEEESC
T ss_pred EEcCCCCEEEEEEEEEecC
Confidence 9999998888888888753
No 433
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=99.59 E-value=1.2e-14 Score=108.79 Aligned_cols=89 Identities=13% Similarity=0.216 Sum_probs=75.1
Q ss_pred CCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEE
Q psy16852 404 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 483 (579)
Q Consensus 404 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 483 (579)
...+|.+...+....+.+|+.+.|.|.+.|.| |.+.|+++|..+..+.++.+ .
T Consensus 6 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~----~---------------------- 58 (95)
T 2ckn_A 6 QAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRI----T---------------------- 58 (95)
T ss_dssp SSCSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEE----C----------------------
T ss_pred CCCCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEE----e----------------------
Confidence 34578888888888999999999999999998 79999999988865554332 0
Q ss_pred eecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 484 ASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 484 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
.+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 59 -------------~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V 94 (95)
T 2ckn_A 59 -------------GEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94 (95)
T ss_dssp -------------SSEEEESSCCGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred -------------CCEEEECCCChHHCEEEEEEeccCCCcEEEEEEEEE
Confidence 234999999999999999999999999988888876
No 434
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*
Probab=99.59 E-value=1.5e-16 Score=139.74 Aligned_cols=177 Identities=17% Similarity=0.149 Sum_probs=109.2
Q ss_pred CCccc-cccCceeeeCCCCEEEEEEEEeeCC---CeeEEEECCEEecCCC-CEEE-EEe---CCEEEEEEcCCCCCCCEE
Q psy16852 6 APRFI-EKIQPVVSHQEQPALFTCKVEGHPL---PTMTWQKDGTELHATE-HYLI-TTV---ESVSTLEIINPTKEDIGV 76 (579)
Q Consensus 6 ~p~~~-~~p~~~~v~~G~~~~l~C~~~~~~~---~~v~W~~~g~~~~~~~-~~~~-~~~---~~~~~L~i~~~~~~d~G~ 76 (579)
+|.+. ..|....+.+|+.++|.|.+.+.++ +.|.| ++..+.... .... ... .....|+|.+++.+|+|.
T Consensus 3 ~p~v~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~ 80 (214)
T 1ow0_A 3 HPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKT 80 (214)
T ss_dssp CCCCEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB--SSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCE
T ss_pred CCEEEEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE--cCCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCe
Confidence 45554 4588888999999999999988654 68999 443332110 0000 000 124678888889999999
Q ss_pred EEEEEEcCCeeeEEEEEEEEEecccCCCCCceec-CCCceEEccCCcEEEEEEEEee-cC-CeEEEEECCEEccCCCCce
Q psy16852 77 YTCKATNIGGVATCSANLIVLEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGR-PT-PSICWYRGKEEILPDNGHT 153 (579)
Q Consensus 77 Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~ 153 (579)
|+|.+.+..+.......+.+ .....+|.+.. .+....+.+|+.++|.|.+.|+ |+ +.|.|++++..+.......
T Consensus 81 Y~C~~~~~~~~~~~~~~i~~---~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~ 157 (214)
T 1ow0_A 81 FTCTAAYPESKTPLTATLSK---SGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLT 157 (214)
T ss_dssp EEEEECCSSCSSCEEEEEEC---CSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEE
T ss_pred EEEEEecCCCCCceeEeecc---CCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceee
Confidence 99999987654332233321 11123444432 2222335679999999999886 43 5999999998876542111
Q ss_pred --EEEcC--CCCe----EEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852 154 --MEFNP--TTGE----CVLSISEATPQDEAVYSVKAVNTFG 187 (579)
Q Consensus 154 --~~~~~--~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~ 187 (579)
..... .++. ..|.+.....++.|.|+|.|.|...
T Consensus 158 ~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l 199 (214)
T 1ow0_A 158 WASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL 199 (214)
T ss_dssp CCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred cCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCC
Confidence 11110 2222 2344554444568999999999754
No 435
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A
Probab=99.59 E-value=3.5e-14 Score=118.24 Aligned_cols=159 Identities=16% Similarity=0.184 Sum_probs=108.3
Q ss_pred cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE--CCEEe-cCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK--DGTEL-HATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG 85 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~--~g~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 85 (579)
+...|.+..|.+|+++.|+|.+....+..+.|.- ++..+ ..+ .....|.|.+++. | |.|.|.+....
T Consensus 2 v~v~P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~~~--------~~~~~l~l~~vs~-~-g~y~C~~~c~~ 71 (185)
T 1iam_A 2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPG--------NNRKVYELSNVQE-D-SQPMCYSNCPD 71 (185)
T ss_dssp EEEESSEEEEETTEEEEEEEEECSSSCSEEEEECSSCEEEECSSS--------SSEEEEEEEEECS-C-BCCEEEEECSS
T ss_pred eEEECCCcEEeCCCCEEEEEEccCCCCccceEEeeCCCccEeccC--------CceeEEEEEecCc-C-CEEEEEEECCC
Confidence 3456788899999999999999643333477753 11122 111 2336789999983 4 99999997665
Q ss_pred eeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEe-ecCC--eEEEEECCEEccCCCCceEEEcCCCCe
Q psy16852 86 GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTP--SICWYRGKEEILPDNGHTMEFNPTTGE 162 (579)
Q Consensus 86 g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~ 162 (579)
......+.|.|+..| ......+.+..+.+|+.++|.|.+.+ .|.. .|+||+++..+.... .......
T Consensus 72 ~~~~~~~~l~V~~~P-----~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~-----~~~~~~~ 141 (185)
T 1iam_A 72 GQSTAKTFLTVYWTP-----ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREP-----AVGEPAE 141 (185)
T ss_dssp CEEEEECEEEEEBCC-----SEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE-----CCTTTEE
T ss_pred CceEEEEEEEEeCCC-----CCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEccccc-----CCCcccc
Confidence 567778888888643 22333334445789999999999987 4543 589999998875421 1112233
Q ss_pred EEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852 163 CVLSISEATPQDEAVYSVKAVNTFG 187 (579)
Q Consensus 163 ~~l~i~~~~~~d~G~Y~C~~~~~~~ 187 (579)
.+|.+...+.+|...|+|+|.+..+
T Consensus 142 ~tl~~~~~reD~g~~~sC~A~~~l~ 166 (185)
T 1iam_A 142 VTTTVLVRRDHHGAQFSCRTELDLR 166 (185)
T ss_dssp EEEEEECCSSCSSCEEEEEEEEECG
T ss_pred EEEEEeceeccCCCeEEEEEEecCc
Confidence 4677776666666699999998765
No 436
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=99.59 E-value=2.1e-15 Score=116.27 Aligned_cols=97 Identities=26% Similarity=0.457 Sum_probs=72.9
Q ss_pred CcCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852 2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81 (579)
Q Consensus 2 ~~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (579)
.+..+|.|...|.+..+.+|+.++|.|.+.|.|.+.+.|+++|..+.....+.. ......|.|.+++.+|+|.|+|.|
T Consensus 6 ~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a 83 (108)
T 3kvq_A 6 LERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL--KDGNRNLTIRRVRKEDEGLYTCQA 83 (108)
T ss_dssp -----CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEE--ETTTTEEEECSCCGGGCEEEEEEE
T ss_pred CccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEE--eCCCcEEEEeecCcccCEEEEEEE
Confidence 355789999999999999999999999999999999999999998876666543 334468999999999999999999
Q ss_pred EcCCeeeEEEEEEEEEecc
Q psy16852 82 TNIGGVATCSANLIVLEKE 100 (579)
Q Consensus 82 ~~~~g~~~~~~~~~v~~~~ 100 (579)
.|..|.....+.|.|...+
T Consensus 84 ~n~~g~~~~~~~l~V~~~~ 102 (108)
T 3kvq_A 84 CSVLGCAKVEAFFIIEGAQ 102 (108)
T ss_dssp C----CEEEEEEEEEEC--
T ss_pred EeCCCceEEEEEEEEeCCC
Confidence 9999999988999887653
No 437
>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H
Probab=99.59 E-value=1.6e-14 Score=127.84 Aligned_cols=174 Identities=13% Similarity=0.177 Sum_probs=108.0
Q ss_pred ccCceeeeCCCCEEEEEEEEee--CCCeeEEEECC--E---Ee---c-----------CCCCEEEEEe--CCEEEEEEcC
Q psy16852 12 KIQPVVSHQEQPALFTCKVEGH--PLPTMTWQKDG--T---EL---H-----------ATEHYLITTV--ESVSTLEIIN 68 (579)
Q Consensus 12 ~p~~~~v~~G~~~~l~C~~~~~--~~~~v~W~~~g--~---~~---~-----------~~~~~~~~~~--~~~~~L~i~~ 68 (579)
.|..+.+.+|++|+|.|.+.+. +...+.|||.. . .+ . ...++.+... ....+|+|.+
T Consensus 6 q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (226)
T 3mlr_H 6 ESGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTT 85 (226)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESS
T ss_pred cCCCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECC
Confidence 4557999999999999999753 24579999832 1 11 0 1134544433 2567899999
Q ss_pred CCCCCCEEEEEEEEcCCe-------ee--EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-c-CCeE
Q psy16852 69 PTKEDIGVYTCKATNIGG-------VA--TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-P-TPSI 137 (579)
Q Consensus 69 ~~~~d~G~Y~C~~~~~~g-------~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~i 137 (579)
++.+|+|.|+|.+.+..+ .. ...+.+.|...+ ..+|.+........+.+|+.++|.|.+.+. | .+.+
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~--~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v 163 (226)
T 3mlr_H 86 LQASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGT--TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV 163 (226)
T ss_dssp CCGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCC--CBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEE
T ss_pred CCcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCC--CCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEE
Confidence 999999999999976421 01 122355554321 233444322222334579999999999775 4 3689
Q ss_pred EEEECCEEccCCCC-ceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEE
Q psy16852 138 CWYRGKEEILPDNG-HTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAEC 191 (579)
Q Consensus 138 ~W~~~~~~~~~~~~-~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 191 (579)
.| ++..+..... ...... .++ .+.|.|.....+| |.|+|.+.|..+....
T Consensus 164 ~W--~~~~~~~~~~~~~~~~~-~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~ 218 (226)
T 3mlr_H 164 SW--NSGALTSGVHTFPAVLQ-SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKV 218 (226)
T ss_dssp EE--GGGTCCTTEEECCCEEC-TTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEE
T ss_pred EE--CCccccCCeEeCCcEEC-CCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCe
Confidence 99 3332221100 000011 111 2478899998889 9999999998765443
No 438
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=99.58 E-value=3.6e-15 Score=114.92 Aligned_cols=91 Identities=24% Similarity=0.471 Sum_probs=69.0
Q ss_pred CCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS 486 (579)
Q Consensus 407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 486 (579)
+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+....++.+.
T Consensus 10 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~----------------------------- 60 (108)
T 3kvq_A 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK----------------------------- 60 (108)
T ss_dssp -CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEE-----------------------------
T ss_pred CCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEe-----------------------------
Confidence 788887888889999999999999999999999999999887655443321
Q ss_pred ceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEee
Q psy16852 487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLP 534 (579)
Q Consensus 487 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 534 (579)
...+.|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus 61 --------~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 100 (108)
T 3kvq_A 61 --------DGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 100 (108)
T ss_dssp --------TTTTEEEECSCCGGGCEEEEEEEC----CEEEEEEEEEEC
T ss_pred --------CCCcEEEEeecCcccCEEEEEEEEeCCCceEEEEEEEEeC
Confidence 1234599999999999999999999999999999999873
No 439
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=99.58 E-value=2.9e-15 Score=114.49 Aligned_cols=94 Identities=18% Similarity=0.312 Sum_probs=79.6
Q ss_pred CCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852 405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 484 (579)
Q Consensus 405 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~ 484 (579)
..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+..+.++.+..
T Consensus 12 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~-------------------------- 65 (106)
T 1nct_A 12 TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT-------------------------- 65 (106)
T ss_dssp SCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEE--------------------------
T ss_pred CCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEE--------------------------
Confidence 357888888888999999999999999999999999999998887665554432
Q ss_pred ecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 485 SSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 485 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
....+.|.|.+++.+|+|.|+|.|.|..|....++.|.|+
T Consensus 66 ---------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 105 (106)
T 1nct_A 66 ---------TKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105 (106)
T ss_dssp ---------CSSEEEEEECCCCSSCCSEEEECCBCSSCBCCEEEEEEEC
T ss_pred ---------CCCEEEEEECcCCchhCEEEEEEEEeCCCeEEEEEEEEEE
Confidence 2334569999999999999999999999999999999874
No 440
>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...
Probab=99.58 E-value=6.9e-15 Score=131.45 Aligned_cols=176 Identities=14% Similarity=0.187 Sum_probs=110.1
Q ss_pred CceEEccCCcEEEEEEEEeec----CCeEEEEECCE-----Ec---c------C----------CCCceEEEcCCCCeEE
Q psy16852 113 KPVIAEAQSPATLKATVTGRP----TPSICWYRGKE-----EI---L------P----------DNGHTMEFNPTTGECV 164 (579)
Q Consensus 113 ~~~~~~~g~~~~l~C~~~~~p----~~~i~W~~~~~-----~~---~------~----------~~~~~~~~~~~~~~~~ 164 (579)
..+.+.+|++++|.|.+.+.+ ...+.||+... .+ . . ..++.+..+...+..+
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~ 87 (239)
T 3tv3_H 8 GPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVF 87 (239)
T ss_dssp SCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEE
T ss_pred CCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEE
Confidence 456788999999999998655 34899998421 11 0 0 1223333333456688
Q ss_pred EEECcCCCCCCeEEEEEEEcCCc-----------ee--EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEE
Q psy16852 165 LSISEATPQDEAVYSVKAVNTFG-----------RA--ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTL 231 (579)
Q Consensus 165 l~i~~~~~~d~G~Y~C~~~~~~~-----------~~--~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l 231 (579)
|.|.+++.+|+|.|.|.+.+..+ .. .....+.+.. ....+|.+........+..|+.++|
T Consensus 88 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~-------~~~~~P~v~~~~~~~~~~~g~~v~l 160 (239)
T 3tv3_H 88 LKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSS-------ASTKGPSVFPLAPSSKSTSGGTAAL 160 (239)
T ss_dssp EEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECC-------CCCBCCEEEEECCCCCC--TTEEEE
T ss_pred EEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeecc-------CCCcCCEEEEECCChhhccCCcEEE
Confidence 99999999999999999976421 00 1112333321 1123455553333334557999999
Q ss_pred EEEEEc-cCCC-eEEEEECCEEeccCc---e----EEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEE
Q psy16852 232 EAEYTG-TPTP-EVKWFKNGKEIVSKD---I----ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSV 296 (579)
Q Consensus 232 ~C~~~~-~p~~-~v~W~~~~~~i~~~~---~----~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~ 296 (579)
.|.+.+ .|.+ .+.|++++..+.... . ......+.|.|......| |.|+|.|.|..+.......+
T Consensus 161 ~C~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l 233 (239)
T 3tv3_H 161 GCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRV 233 (239)
T ss_dssp EEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEEC
T ss_pred EEEEeeEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEe
Confidence 999988 5544 689999886332111 0 111123578899888888 99999999988665544433
No 441
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=7.5e-15 Score=111.00 Aligned_cols=89 Identities=28% Similarity=0.458 Sum_probs=74.0
Q ss_pred CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS 485 (579)
Q Consensus 406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 485 (579)
.+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+.......
T Consensus 10 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~------------------------------ 59 (99)
T 2yr3_A 10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC------------------------------ 59 (99)
T ss_dssp EEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEE------------------------------
T ss_pred cCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEe------------------------------
Confidence 36777777788889999999999999999999999999998775432211
Q ss_pred cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
....+.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 60 --------~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V 98 (99)
T 2yr3_A 60 --------EAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98 (99)
T ss_dssp --------ETTEEEEEECSCCTTCCBCEEEEEECSSCEEEEECCEEE
T ss_pred --------eCCeEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEE
Confidence 123456999999999999999999999999988888876
No 442
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.4e-14 Score=112.13 Aligned_cols=91 Identities=16% Similarity=0.302 Sum_probs=74.0
Q ss_pred CCeeec---CCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEE
Q psy16852 407 APKFTK---PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 483 (579)
Q Consensus 407 ~p~~~~---~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 483 (579)
+|.+.. ......+.+|+.+.|.|.+.|.|.|.+.|++++..+. ..++.+.
T Consensus 21 ~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~-------------------------- 73 (118)
T 2e7c_A 21 PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVR-------------------------- 73 (118)
T ss_dssp EEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEE--------------------------
T ss_pred CCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEE--------------------------
Confidence 566654 2456789999999999999999999999999999885 3333322
Q ss_pred eecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 484 ASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 484 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.....+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 74 ---------~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 114 (118)
T 2e7c_A 74 ---------TSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVV 114 (118)
T ss_dssp ---------ECSSEEEEEESSCCTTTCEEEEEEEECSSCEECCEEEEEEE
T ss_pred ---------ECCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEEEEEEEE
Confidence 23345569999999999999999999999999999999875
No 443
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=99.58 E-value=2.8e-14 Score=109.53 Aligned_cols=92 Identities=20% Similarity=0.257 Sum_probs=74.2
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCC---CeeEEEECCEEecC---CCCEEEEE--eC----CEEEEEEcCCCCCC
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPL---PTMTWQKDGTELHA---TEHYLITT--VE----SVSTLEIINPTKED 73 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~---~~v~W~~~g~~~~~---~~~~~~~~--~~----~~~~L~i~~~~~~d 73 (579)
.|.|+..|.++.+.+|++++|.|.+.|.|. +.|.|||++..... ..++.+.. .. ....|.|.+++.+|
T Consensus 4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 83 (108)
T 3cx2_A 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF 83 (108)
T ss_dssp CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence 588999999999999999999999999887 89999998732211 23444321 11 25789999999999
Q ss_pred CEEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 74 IGVYTCKATNIGGVATCSANLIVL 97 (579)
Q Consensus 74 ~G~Y~C~~~~~~g~~~~~~~~~v~ 97 (579)
+|.|+|.|.|..|.....+.|.|.
T Consensus 84 ~G~Y~C~a~N~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 84 TGSYRCEVSTKDKFDCSNFNLTVH 107 (108)
T ss_dssp CEEEEEEEECSSCEEEEEEEEEEE
T ss_pred CEEEEEEEecCCCceEEEEEEEEe
Confidence 999999999999999988888885
No 444
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.57 E-value=1.6e-14 Score=109.54 Aligned_cols=91 Identities=22% Similarity=0.424 Sum_probs=76.8
Q ss_pred CcCCCCccccccCc-eeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCC-CCEEEEEeCCEEEEEEcCCCCCCCEEEEE
Q psy16852 2 AEVLAPRFIEKIQP-VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHAT-EHYLITTVESVSTLEIINPTKEDIGVYTC 79 (579)
Q Consensus 2 ~~~~~p~~~~~p~~-~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 79 (579)
....+|.|+..+.+ +.+.+|++++|.|.+ +.|.+.+.|+|+|..+..+ .++.+...+....|.|.+++.+|+|.|+|
T Consensus 11 ~~~~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 89 (104)
T 1pd6_A 11 DEKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQC 89 (104)
T ss_dssp CCSTTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEE
T ss_pred CccCCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEE
Confidence 45678999998887 899999999999999 6788899999999999877 67777777778899999999999999999
Q ss_pred EEEcCCeeeEEEEEEEEE
Q psy16852 80 KATNIGGVATCSANLIVL 97 (579)
Q Consensus 80 ~~~~~~g~~~~~~~~~v~ 97 (579)
.+.+ ...++.+.|.
T Consensus 90 ~a~~----~~~~~~l~V~ 103 (104)
T 1pd6_A 90 VVGG----EKCSTELFVK 103 (104)
T ss_dssp EETT----EEECCEEEEE
T ss_pred EECC----CcEEEEEEEe
Confidence 9933 4455566653
No 445
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=9.2e-15 Score=111.60 Aligned_cols=92 Identities=18% Similarity=0.361 Sum_probs=79.1
Q ss_pred CCCCccccccCc---eeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy16852 4 VLAPRFIEKIQP---VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCK 80 (579)
Q Consensus 4 ~~~p~~~~~p~~---~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 80 (579)
..||.++..|.. +.+.+|+.++|.|.+.+.+.+ +.|||+|..+....++.+...+....|.|.+++.+|+|.|+|.
T Consensus 5 ~~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 83 (104)
T 2e6p_A 5 SSGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECR 83 (104)
T ss_dssp CSSSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEE
T ss_pred CCCCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEE
Confidence 357888888888 899999999999999988888 9999999999888888887777889999999999999999999
Q ss_pred EEcCCeeeEEEEEEEEEecc
Q psy16852 81 ATNIGGVATCSANLIVLEKE 100 (579)
Q Consensus 81 ~~~~~g~~~~~~~~~v~~~~ 100 (579)
+.|..+ .+.|.|.+++
T Consensus 84 a~n~~~----~~~l~V~~~P 99 (104)
T 2e6p_A 84 TEGVSA----FFGVTVQDPS 99 (104)
T ss_dssp CSSCCC----CEEEEEECCC
T ss_pred ECCceE----EEEEEEcCCC
Confidence 988633 5667776553
No 446
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...
Probab=99.57 E-value=6.8e-14 Score=124.57 Aligned_cols=196 Identities=15% Similarity=0.212 Sum_probs=115.1
Q ss_pred EEeccceeeeeeeeeeccc--cCce--eeeecCeeEEEeeeCCCeE-EEEECCE---E---ccCCCeEEEEEC-CCCeEE
Q psy16852 298 ITVAEAETVMMDVRVESHP--TASF--QWFIHSEPVVVTGKPTPLV-TWSHDGT---P---MKEGKEVTIYQD-TDGLCK 365 (579)
Q Consensus 298 v~~~~~~~~~l~~~~~~~~--~~~~--~~~~~~~~~~~~g~p~~~i-~W~~~~~---~---~~~~~~~~~~~~-~~~~~~ 365 (579)
+.+..|+.+.|.|...... ...+ .|+... .+.....+ .+...+. . -....++....+ ..+.+.
T Consensus 10 ~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s 84 (232)
T 3qhz_H 10 ALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQP-----PGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVV 84 (232)
T ss_dssp SEECTTSCEEEEEEEESCGGGCTTCEEEEEEEC-----TTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEE
T ss_pred EEECCCCcEEEEEEEeCcccccceeEeEEEEEC-----CCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEE
Confidence 4477899999999876432 2334 665421 11111111 1211211 1 111245555443 356788
Q ss_pred EEEcccCCCCCEEEEEEEEcCc--------eeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCC
Q psy16852 366 LAISEVFPENAGLYSCTAVNPV--------GEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP 437 (579)
Q Consensus 366 l~i~~~~~~d~G~Y~C~a~n~~--------g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~ 437 (579)
|.|.+++.+|+|.|.|.+.+.. ........|.|.. ....+|.+........+..|+.++|.|.+.+.+++
T Consensus 85 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~--~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~ 162 (232)
T 3qhz_H 85 LTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSS--ASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE 162 (232)
T ss_dssp EEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECS--SCCBCCEEEEECC-------CEEEEEEEEEEEBSS
T ss_pred EEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEec--CCCCCCEEEEecccccccCCCcEEEEEEEeeEeCC
Confidence 9999999999999999999763 1222334566653 22245666533333345679999999999986543
Q ss_pred --eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEE
Q psy16852 438 --SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTC 515 (579)
Q Consensus 438 --~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 515 (579)
.+.|++++..+.... ........|.|... +.|+|.....+| |.|+|
T Consensus 163 ~~~v~W~~~g~~~~~~~-----------------~~~~~~~~g~~~~~--------------s~L~i~~~~~~~-g~ytC 210 (232)
T 3qhz_H 163 PVTVSWNSGALTSGVHT-----------------FPAVLQSSGLYSLS--------------SVVTVPSSSLGT-QTYIC 210 (232)
T ss_dssp CCEEEEGGGTBCTTEEE-----------------CCCEECTTSCEEEE--------------EEEEEEGGGGGT-CCCEE
T ss_pred CeEEEEEECCEecceee-----------------ccceeCCCCCEEEE--------------EEEEEchhhcCC-CEEEE
Confidence 688999885431100 00011223444332 449999999999 99999
Q ss_pred EEEeCCeeEEEEEEEEE
Q psy16852 516 RAENVAGSVTCTATLSL 532 (579)
Q Consensus 516 ~a~n~~g~~~~~~~l~v 532 (579)
.|.|..+.......|.+
T Consensus 211 ~v~~~~~~~~~~~~l~~ 227 (232)
T 3qhz_H 211 NVNHKPSNTKVDKRVEP 227 (232)
T ss_dssp EEEEGGGTEEEEEECCC
T ss_pred EEEeCCCCccEEEEeCC
Confidence 99999988877777664
No 447
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=9.9e-15 Score=112.84 Aligned_cols=94 Identities=24% Similarity=0.421 Sum_probs=78.9
Q ss_pred CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS 485 (579)
Q Consensus 406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 485 (579)
.+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+....+..+..
T Consensus 8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~--------------------------- 60 (110)
T 2dm3_A 8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLV--------------------------- 60 (110)
T ss_dssp CCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEE---------------------------
T ss_pred CCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEE---------------------------
Confidence 58888888888999999999999999999999999999998886655433321
Q ss_pred cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.....+.|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 61 -------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 101 (110)
T 2dm3_A 61 -------RENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVA 101 (110)
T ss_dssp -------CTTSCEEEEESSCCGGGCSBBCEEEECSSCEEEECCEEEEE
T ss_pred -------ecCCeEEEEEeeCCcccCEEEEEEEECCCCEEEEEEEEEEe
Confidence 11224569999999999999999999999999999999986
No 448
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=9.2e-15 Score=110.75 Aligned_cols=92 Identities=23% Similarity=0.352 Sum_probs=76.0
Q ss_pred CCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCC-CeeEEEcCCCCeEEEEEccccCCCceeEEE
Q psy16852 404 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN-GHTMEFNPTTGECVLSISEATPQDEAVYSV 482 (579)
Q Consensus 404 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 482 (579)
...+|.+...+....+..|+.++|.|.+.|.|.|.+.|++++..+.... ++.+
T Consensus 5 ~~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~-------------------------- 58 (100)
T 2edj_A 5 SSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATI-------------------------- 58 (100)
T ss_dssp CCSSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEE--------------------------
T ss_pred CCCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEE--------------------------
Confidence 3458888888888899999999999999999999999999998875322 2211
Q ss_pred EeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 483 KASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 483 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
...+.|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 59 ------------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 97 (100)
T 2edj_A 59 ------------QEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97 (100)
T ss_dssp ------------CTTCCEEEESCCTTTCCEEEEEEECSSCCCBCCEEEEEE
T ss_pred ------------cCCCEEEEccCCcccCEEEEEEEEcCCCCEEEEEEEEEe
Confidence 012249999999999999999999999999999999875
No 449
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI, thick filament, immunoglobulin domain; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.57 E-value=7.8e-15 Score=117.06 Aligned_cols=85 Identities=25% Similarity=0.348 Sum_probs=74.5
Q ss_pred cCceeeeCCCCEEEEEEEEeeCCCeeEEEECC----------------------------EEe-cCCCCEEEEEeCCEEE
Q psy16852 13 IQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG----------------------------TEL-HATEHYLITTVESVST 63 (579)
Q Consensus 13 p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g----------------------------~~~-~~~~~~~~~~~~~~~~ 63 (579)
|.++.+.+|+.++|.|.+.|.|.|.|+|+|+| ..+ ....++.+...+....
T Consensus 25 p~~~~v~~G~~v~L~C~~~G~P~P~i~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~i~~~~~~s~ 104 (139)
T 1gxe_A 25 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSI 104 (139)
T ss_dssp CCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEEE
T ss_pred CCCEEEeCCCeEEEEEEEEEcCCCeEEEEECCcccccccccccccccccccccccccccceeecCCCCeEEEEeCCCEEE
Confidence 78899999999999999999999999999999 444 2445666666677789
Q ss_pred EEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEE
Q psy16852 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIVL 97 (579)
Q Consensus 64 L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~ 97 (579)
|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 105 L~I~~v~~~DsG~Y~C~A~N~~G~~~~~~~L~V~ 138 (139)
T 1gxe_A 105 FTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 138 (139)
T ss_dssp EECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred EEECCCCcccCEEEEEEEEeCCceEEEEEEEEEE
Confidence 9999999999999999999999998888888874
No 450
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=99.57 E-value=2e-14 Score=107.42 Aligned_cols=87 Identities=24% Similarity=0.401 Sum_probs=76.3
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG 85 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 85 (579)
.|.|...|.++.+.+|++++|.|.+ +.|.+.+.|||+|..+..+.++.+...+....|.|.+++.+|+|.|+|.+
T Consensus 8 ~~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a---- 82 (95)
T 2k1m_A 8 VSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA---- 82 (95)
T ss_dssp CCCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE----
T ss_pred CCeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE----
Confidence 4788999999999999999999999 77888999999999998888888887777889999999999999999999
Q ss_pred eeeEEEEEEEEE
Q psy16852 86 GVATCSANLIVL 97 (579)
Q Consensus 86 g~~~~~~~~~v~ 97 (579)
|....++.|.|.
T Consensus 83 g~~~~~~~l~V~ 94 (95)
T 2k1m_A 83 GSSKVKFDLKVI 94 (95)
T ss_dssp TTEEEEEEEEEE
T ss_pred CCceEEEEEEEe
Confidence 445556677664
No 451
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.57 E-value=1.5e-14 Score=128.42 Aligned_cols=177 Identities=18% Similarity=0.179 Sum_probs=108.7
Q ss_pred cCCCceEEccCCcEEEEEEEEee--cCCeEEEEECC--E---Ecc-------------CCCCceEEEcCCCCeEEEEECc
Q psy16852 110 KPLKPVIAEAQSPATLKATVTGR--PTPSICWYRGK--E---EIL-------------PDNGHTMEFNPTTGECVLSISE 169 (579)
Q Consensus 110 ~~~~~~~~~~g~~~~l~C~~~~~--p~~~i~W~~~~--~---~~~-------------~~~~~~~~~~~~~~~~~l~i~~ 169 (579)
..+..+.+.+|++++|.|.+.+. +...+.||+.. . .+. ...++.+..+...+..+|.|.+
T Consensus 6 q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (230)
T 1ypz_F 6 QPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYS 85 (230)
T ss_dssp CSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECS
T ss_pred ccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECc
Confidence 34566788999999999999764 56789999853 1 110 1122333333334678999999
Q ss_pred CCCCCCeEEEEEEEcC--Cc--eeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CC-CeE
Q psy16852 170 ATPQDEAVYSVKAVNT--FG--RAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PT-PEV 243 (579)
Q Consensus 170 ~~~~d~G~Y~C~~~~~--~~--~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v 243 (579)
++.+|+|.|.|.+.+. .. .......+.|..............|.+.. +....+..|+.++|.|.+.+. |. +.+
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~-p~~~~v~~g~~~~L~C~~~g~~P~~~~v 164 (230)
T 1ypz_F 86 LEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFL-PSVAETNLHKTGTYLCLLEAFFPDVIRV 164 (230)
T ss_dssp CCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEEC-CCHHHHHHHSCEEEEEEEEEESSCCCEE
T ss_pred CChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEEC-CCchhhccCCcceEEEEEeeecCCCeEE
Confidence 9999999999999874 11 11112344443100000000011222222 222334568899999999985 75 599
Q ss_pred EEEE-CCEEeccCc---eEEe----CCeEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852 244 KWFK-NGKEIVSKD---IETK----DNVTKLVIKQTTKKTTGKYEIRVVNEAGE 289 (579)
Q Consensus 244 ~W~~-~~~~i~~~~---~~~~----~~~~~l~i~~~~~~d~G~y~C~a~n~~g~ 289 (579)
.|++ +|..+.... .... ...+.|.|..... + |.|+|.|.|..+.
T Consensus 165 ~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~ 216 (230)
T 1ypz_F 165 YWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNK 216 (230)
T ss_dssp EEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCT
T ss_pred EEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCC
Confidence 9999 887664321 1111 1235688888775 4 9999999998754
No 452
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Probab=99.56 E-value=1.4e-14 Score=109.64 Aligned_cols=90 Identities=22% Similarity=0.358 Sum_probs=79.3
Q ss_pred CCCccccccCc-eeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 5 LAPRFIEKIQP-VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 5 ~~p~~~~~p~~-~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
-+|.|...+.+ +.+.+|+.++|.|.+. .|.+.+.|||+|..+..+.++.+...+....|.|.+++.+|+|.|+|.|
T Consensus 6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-- 82 (100)
T 2yuv_A 6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA-- 82 (100)
T ss_dssp SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE--
T ss_pred CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE--
Confidence 58899988887 7899999999999998 6888999999999998888888888888889999999999999999999
Q ss_pred CCeeeEEEEEEEEEec
Q psy16852 84 IGGVATCSANLIVLEK 99 (579)
Q Consensus 84 ~~g~~~~~~~~~v~~~ 99 (579)
|....++.|.|.++
T Consensus 83 --g~~~~~~~l~V~~~ 96 (100)
T 2yuv_A 83 --GDEKCSTELFVRSG 96 (100)
T ss_dssp --TTEEEEEEEEECCS
T ss_pred --CCceEEEEEEEecC
Confidence 55667778888653
No 453
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=99.56 E-value=4.1e-14 Score=109.05 Aligned_cols=85 Identities=18% Similarity=0.221 Sum_probs=67.0
Q ss_pred cCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEE
Q psy16852 421 AQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL 500 (579)
Q Consensus 421 ~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l 500 (579)
.+..+.|.|.+.|+|.|+|+|+|+|.+|..+.++.+.+... ..+ .....+.|
T Consensus 14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~------------~~~----------------~~~~~~~L 65 (126)
T 1he7_A 14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEP------------AAN----------------ETVRHGCL 65 (126)
T ss_dssp CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECC------------CSS----------------CCCEEEEE
T ss_pred cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeec------------ccc----------------ccccceEE
Confidence 56789999999999999999999999998776655432100 000 01123569
Q ss_pred EEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 501 LISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 501 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.|.++..+|+|.|+|.|.|.+|....++.|.|.
T Consensus 66 ~i~~~~~~D~G~YtC~A~N~~G~~~~t~~l~v~ 98 (126)
T 1he7_A 66 RLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 98 (126)
T ss_dssp EEESCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred EECcCCCCCCEEEEEEEEECCCeEEEEEEEEEE
Confidence 999999999999999999999999999999865
No 454
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=6.4e-15 Score=112.37 Aligned_cols=94 Identities=22% Similarity=0.296 Sum_probs=75.1
Q ss_pred CCCccccccCceeeeCCCCEEEEEEEEee---CCCeeEEEECCE-EecC--CCCEEEEEe-C-----CEEEEEEcCCCCC
Q psy16852 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGH---PLPTMTWQKDGT-ELHA--TEHYLITTV-E-----SVSTLEIINPTKE 72 (579)
Q Consensus 5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~---~~~~v~W~~~g~-~~~~--~~~~~~~~~-~-----~~~~L~i~~~~~~ 72 (579)
.++.|+..|.++.|.+|++++|.|.+.+. |.|.|.|||+.. .+.. ..++.+... . ...+|+|.+++.+
T Consensus 11 ~~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~ 90 (118)
T 2edn_A 11 PTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLG 90 (118)
T ss_dssp CSSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTT
T ss_pred CcceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChh
Confidence 46778999999999999999999999874 678999999752 2221 233333221 1 1589999999999
Q ss_pred CCEEEEEEEEcCCeeeEEEEEEEEEe
Q psy16852 73 DIGVYTCKATNIGGVATCSANLIVLE 98 (579)
Q Consensus 73 d~G~Y~C~~~~~~g~~~~~~~~~v~~ 98 (579)
|+|.|+|+|.|..|..+..+.|.|.+
T Consensus 91 D~G~Y~Cevsn~~g~~s~~~~L~V~~ 116 (118)
T 2edn_A 91 DRGYYRLEVKAKDTCDSCGFNIDVEA 116 (118)
T ss_dssp TCSCEEEEEECSSCEEEEEECCEEEC
T ss_pred hCEEEEEEEEEcCCcEEEEEEEEEEc
Confidence 99999999999999998899998864
No 455
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.55 E-value=5.9e-14 Score=109.17 Aligned_cols=94 Identities=23% Similarity=0.388 Sum_probs=78.0
Q ss_pred CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCC-CCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPD-NGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 484 (579)
Q Consensus 406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~ 484 (579)
.+|.|+..+....+.+|+.++|.|.+.|.|.|.+.|++++..+... .++.+..+
T Consensus 14 ~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~------------------------- 68 (116)
T 2kkq_A 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQD------------------------- 68 (116)
T ss_dssp BCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEEC-------------------------
T ss_pred CCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeC-------------------------
Confidence 4788888888999999999999999999999999999999988643 33333210
Q ss_pred ecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 485 SSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 485 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
....+.|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 69 ---------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 108 (116)
T 2kkq_A 69 ---------NTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVT 108 (116)
T ss_dssp ---------TTCEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ---------CCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEEe
Confidence 1123469999999999999999999999999999999986
No 456
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.55 E-value=8.4e-15 Score=105.56 Aligned_cols=80 Identities=20% Similarity=0.355 Sum_probs=63.4
Q ss_pred CCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852 414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT 493 (579)
Q Consensus 414 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 493 (579)
+..+.+.+|+.+.|.|.+.+ |.|.|.|+|+|..|..+.++.+..
T Consensus 3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~----------------------------------- 46 (84)
T 2lu7_A 3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQ----------------------------------- 46 (84)
T ss_dssp CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEE-----------------------------------
T ss_pred CeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEee-----------------------------------
Confidence 45677899999999999965 999999999999998877766544
Q ss_pred eCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 494 DGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
++..+.|+|.+++.+|+|.|+|.|.| ...++.|.|.
T Consensus 47 ~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~a~l~V~ 82 (84)
T 2lu7_A 47 AGARQVLRVQGARSGDAGEYLCDAPQ----DSRIFLVSVE 82 (84)
T ss_dssp CSSCEEEEESSCSSTTCEEEEEECTT----TCEEEEEEEC
T ss_pred cCCeEEEEecCCCCcccEEEEEEECC----EEEEEEEEEE
Confidence 34455688888888889999999855 4556677764
No 457
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=105.74 Aligned_cols=86 Identities=17% Similarity=0.276 Sum_probs=65.3
Q ss_pred CCCeeecCCCce--eeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEE
Q psy16852 406 EAPKFTKPLKPV--IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 483 (579)
Q Consensus 406 ~~p~~~~~~~~~--~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 483 (579)
.||.+..++... .+.+|+.+.|.|.+.+ |.|.+.|+|+|..|..+.++.+..
T Consensus 3 ~P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~------------------------- 56 (91)
T 2lvc_A 3 MPVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLEN------------------------- 56 (91)
T ss_dssp CCCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEE-------------------------
T ss_pred CCcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEe-------------------------
Confidence 366666666654 4568999999999965 889999999999998877766543
Q ss_pred eecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEE
Q psy16852 484 ASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531 (579)
Q Consensus 484 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 531 (579)
++....|.|.++..+|+|.|+|.|.|. ..++.|+
T Consensus 57 ----------~~~~~~L~I~~v~~~D~G~Y~C~a~n~----~~~~~lt 90 (91)
T 2lvc_A 57 ----------EGPHRRLVLPATQPSDGGEFQCVAGDE----CAYFTVT 90 (91)
T ss_dssp ----------ETTEEEEEESSCCGGGCSEEEEECSSC----EEEEEEE
T ss_pred ----------cCCeEEEEeCCCChhhcEEEEEEEcce----EEEEEEE
Confidence 445566888888888899999998664 4455554
No 458
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X
Probab=99.55 E-value=3.3e-14 Score=107.83 Aligned_cols=93 Identities=20% Similarity=0.247 Sum_probs=74.7
Q ss_pred CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEE--eC---CEEEEEEcCCCCCCCEEEE
Q psy16852 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITT--VE---SVSTLEIINPTKEDIGVYT 78 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~--~~---~~~~L~i~~~~~~d~G~Y~ 78 (579)
.+||++..... ...|+.+.|.|.+.|.|.|.++|+++|..+..+....... .. ..+.|.|.+++.+|+|.|+
T Consensus 2 ~~pP~i~~~~~---~~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 78 (103)
T 1wwb_X 2 HFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT 78 (103)
T ss_dssp CCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred CCCCEEEeccC---ceECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEE
Confidence 47888754322 3468899999999999999999999999998776543321 11 2456999999999999999
Q ss_pred EEEEcCCeeeEEEEEEEEEec
Q psy16852 79 CKATNIGGVATCSANLIVLEK 99 (579)
Q Consensus 79 C~~~~~~g~~~~~~~~~v~~~ 99 (579)
|.|.|..|....++.|.|.+.
T Consensus 79 C~A~N~~G~~~~~~~l~V~~~ 99 (103)
T 1wwb_X 79 LIAKNEYGKDEKQISAHFMGW 99 (103)
T ss_dssp EEEECSSCEEEEEEEECCSCC
T ss_pred EEEEeCCCcEeEEEEEEECCC
Confidence 999999999999988888754
No 459
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X
Probab=99.55 E-value=7e-14 Score=105.98 Aligned_cols=95 Identities=18% Similarity=0.182 Sum_probs=70.7
Q ss_pred CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS 485 (579)
Q Consensus 406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 485 (579)
.||.+..... ...|+.+.|.|.+.|.|.|+++|+++|..+..+.+..+.+. .
T Consensus 3 ~pP~i~~~~~---~~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~-----------~-------------- 54 (103)
T 1wwb_X 3 FAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIH-----------V-------------- 54 (103)
T ss_dssp CCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEE-----------E--------------
T ss_pred CCCEEEeccC---ceECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEE-----------e--------------
Confidence 3566542222 34578899999999999999999999999876654322210 0
Q ss_pred cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.......+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 55 -----~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 97 (103)
T 1wwb_X 55 -----TNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFM 97 (103)
T ss_dssp -----ECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECCS
T ss_pred -----cCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEEEC
Confidence 0001124569999999999999999999999999999999865
No 460
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI, thick filament, immunoglobulin domain; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.55 E-value=1.3e-14 Score=115.75 Aligned_cols=114 Identities=12% Similarity=0.203 Sum_probs=70.1
Q ss_pred CCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852 414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT 493 (579)
Q Consensus 414 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 493 (579)
+....+.+|+.++|.|.+.|.|.|.|.|+|++............. ...+.. .......|.-.......+..+..
T Consensus 25 p~~~~v~~G~~v~L~C~~~G~P~P~i~W~k~g~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~l~~~~~r~~i~~ 98 (139)
T 1gxe_A 25 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPD-APEDTG-----DSDEWVFDKKLLCETEGRVRVET 98 (139)
T ss_dssp CCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCC-CCCCCC-----CSSCCCCSCCCCCSCSSSCEEEE
T ss_pred CCCEEEeCCCeEEEEEEEEEcCCCeEEEEECCccccccccccccc-cccccc-----ccccccccceeecCCCCeEEEEe
Confidence 456789999999999999999999999999882110000000000 000000 00000000000000011223444
Q ss_pred eCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 494 DGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
++..+.|+|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 99 ~~~~s~L~I~~v~~~DsG~Y~C~A~N~~G~~~~~~~L~V~ 138 (139)
T 1gxe_A 99 TKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 138 (139)
T ss_dssp ETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred CCCEEEEEECCCCcccCEEEEEEEEeCCceEEEEEEEEEE
Confidence 5667889999999999999999999999999999999874
No 461
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Probab=99.55 E-value=6.7e-15 Score=111.54 Aligned_cols=92 Identities=25% Similarity=0.377 Sum_probs=74.4
Q ss_pred CCCcccccc----CceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEE-EEEeCCEEEEEEcCCCCCCCEEEEE
Q psy16852 5 LAPRFIEKI----QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYL-ITTVESVSTLEIINPTKEDIGVYTC 79 (579)
Q Consensus 5 ~~p~~~~~p----~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C 79 (579)
.||.|...| ..+.+.+|+.++|.|.+.|.|.+.+.|+++|..+....... .........|.|.+++.+|+|.|+|
T Consensus 3 ~~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 82 (100)
T 3caf_A 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 82 (100)
T ss_dssp EEEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred CCCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEE
Confidence 477787655 46889999999999999999999999999999886543211 1222334589999999999999999
Q ss_pred EEEcCCeeeEEEEEEEE
Q psy16852 80 KATNIGGVATCSANLIV 96 (579)
Q Consensus 80 ~~~~~~g~~~~~~~~~v 96 (579)
.|.|..|.....+.|.|
T Consensus 83 ~a~N~~g~~~~~~~l~V 99 (100)
T 3caf_A 83 VVENEYGSINHTYHLDV 99 (100)
T ss_dssp EEEETTEEEEEEEEEEE
T ss_pred EEEeCCCEEEEEEEEEE
Confidence 99999998888777776
No 462
>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*
Probab=99.55 E-value=1.4e-14 Score=129.80 Aligned_cols=177 Identities=11% Similarity=0.098 Sum_probs=108.3
Q ss_pred CCceEEccCCcEEEEEEEEe--ecCCeEEEEECC--E---Ec---c-----------CCCCceEEEcCCCCeEEEEECcC
Q psy16852 112 LKPVIAEAQSPATLKATVTG--RPTPSICWYRGK--E---EI---L-----------PDNGHTMEFNPTTGECVLSISEA 170 (579)
Q Consensus 112 ~~~~~~~~g~~~~l~C~~~~--~p~~~i~W~~~~--~---~~---~-----------~~~~~~~~~~~~~~~~~l~i~~~ 170 (579)
+.++.+.+|++++|.|.+.+ .+...+.||+.. . .+ . ...++.+..+...+..+|.|.++
T Consensus 6 ~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 85 (248)
T 3u2s_H 6 SGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSL 85 (248)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred CCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCC
Confidence 35677889999999999975 234789999842 1 11 0 01233344444456788999999
Q ss_pred CCCCCeEEEEEEEcCCc--------------------e--eEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCe
Q psy16852 171 TPQDEAVYSVKAVNTFG--------------------R--AECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDST 228 (579)
Q Consensus 171 ~~~d~G~Y~C~~~~~~~--------------------~--~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~ 228 (579)
+.+|+|.|.|.+.+..+ . ......+.|.. ....+|.+........+..|+.
T Consensus 86 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~-------~~~~~P~v~~~~~~~~~~~g~~ 158 (248)
T 3u2s_H 86 RVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSS-------ASTKGPSVFPLAPSSKSTSGGT 158 (248)
T ss_dssp CGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECS-------CCCBCCEEEEECCC------CE
T ss_pred CHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcc-------cCCCCCEEEEeCCCccccCCCc
Confidence 99999999999986310 0 11112333321 1123455543333334556999
Q ss_pred EEEEEEEEc-cC-CCeEEEEECCEEeccCc---e----EEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEE
Q psy16852 229 VTLEAEYTG-TP-TPEVKWFKNGKEIVSKD---I----ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSV 296 (579)
Q Consensus 229 ~~l~C~~~~-~p-~~~v~W~~~~~~i~~~~---~----~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~ 296 (579)
++|.|.+.+ .| ...+.|++++..+.... . ......+.|.|......| |.|+|.|.|..+.......+
T Consensus 159 ~~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l 234 (248)
T 3u2s_H 159 AALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV 234 (248)
T ss_dssp EEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEEC
T ss_pred EEEEEEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEE
Confidence 999999987 45 34899999885321110 0 111223578888888888 99999999987665544433
No 463
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.8e-15 Score=113.69 Aligned_cols=90 Identities=20% Similarity=0.293 Sum_probs=76.8
Q ss_pred CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCC----CEEEEEeCCEEEEEEcCCCCCCCEEEEE
Q psy16852 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE----HYLITTVESVSTLEIINPTKEDIGVYTC 79 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 79 (579)
-.||.|...|.++.+.+|+.++|.|.+.+.+ +.+.|||+|..+.... ++.+...+....|.|.+++.+|+|.|+|
T Consensus 6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 84 (101)
T 2edk_A 6 SGPVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQV 84 (101)
T ss_dssp CCCCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEE
T ss_pred cCCCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEE
Confidence 4678999999999999999999999998888 8999999999987765 5677777777899999999999999999
Q ss_pred EEEcCCeeeEEEEEEEEEe
Q psy16852 80 KATNIGGVATCSANLIVLE 98 (579)
Q Consensus 80 ~~~~~~g~~~~~~~~~v~~ 98 (579)
.|.| ....+.+.|.+
T Consensus 85 ~a~n----~~~~~~l~V~~ 99 (101)
T 2edk_A 85 ITNG----GQCEAELIVEE 99 (101)
T ss_dssp ECSS----CEECCBEEEEC
T ss_pred EEcC----CcEEEEEEEeC
Confidence 9976 34455666654
No 464
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=8.6e-15 Score=112.13 Aligned_cols=92 Identities=24% Similarity=0.356 Sum_probs=79.9
Q ss_pred cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
+-.||.|...|.++.+.+|++++|.|.+.+.+.+ +.|||+|..+....++.+...+....|.|.+++.+|+|.|+|.|.
T Consensus 5 ~~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 83 (106)
T 2dlt_A 5 SSGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPD 83 (106)
T ss_dssp SCCCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEE
T ss_pred CCCCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEc
Confidence 4568999999999999999999999999988876 999999999988888888777778899999999999999999999
Q ss_pred cCCeeeEEEEEEEEE
Q psy16852 83 NIGGVATCSANLIVL 97 (579)
Q Consensus 83 ~~~g~~~~~~~~~v~ 97 (579)
|. .....+.+.|.
T Consensus 84 n~--~~~~~~~l~V~ 96 (106)
T 2dlt_A 84 GY--ALSLSAKLNFL 96 (106)
T ss_dssp TS--CCCCCBCEEEE
T ss_pred cC--CceEEEEEEEE
Confidence 87 33445566665
No 465
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.55 E-value=2.9e-14 Score=110.04 Aligned_cols=112 Identities=15% Similarity=0.197 Sum_probs=78.1
Q ss_pred CCeeecCCCceeeecCCCeEEEEEEEee---CCCeEEEeeCCEE-cC--CCCCeeEEEcCCCCeEEEEEccccCCCceeE
Q psy16852 407 APKFTKPLKPVIAEAQSPATLKATVTGR---PTPSICWYRGKEE-IL--PDNGHTMEFNPTTGECVLSISEATPQDEAVY 480 (579)
Q Consensus 407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~---p~~~v~W~~~~~~-l~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 480 (579)
.|.|...+....+.+|+.++|.|.+.|. |.|.|.|||++.. +. ...++.+.. ......
T Consensus 7 ~~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~-----------~~~~~~----- 70 (126)
T 2dav_A 7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKE-----------TFERHS----- 70 (126)
T ss_dssp SCSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEE-----------EEETTT-----
T ss_pred ccEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEcc-----------cccccc-----
Confidence 4567777888899999999999999874 8999999997421 11 122222210 000000
Q ss_pred EEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEeeCCcccccccCCccccCCC
Q psy16852 481 SVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPE 552 (579)
Q Consensus 481 ~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~v~~~p~~~~~~~ 552 (579)
....+.|.|.++..+|+|.|+|.|.|..|..++++.|.|+.. -...|.+.+.|.
T Consensus 71 -------------~~~~~~L~I~~v~~~DaG~Y~Cevsn~~g~~~~~~~L~V~~~-----~~~~p~~~i~~~ 124 (126)
T 2dav_A 71 -------------RVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHES-----TGTTPNIDSGPS 124 (126)
T ss_dssp -------------TEEEEEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEECC-----CCSCCCCCCSCC
T ss_pred -------------ccceEEEEEccCCcccCEEEEEEEEeCCCcEEEEEEEEEEec-----CCCCCeEEeccC
Confidence 012356999999999999999999999999999999999731 134555555553
No 466
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.8e-14 Score=108.24 Aligned_cols=90 Identities=21% Similarity=0.255 Sum_probs=75.7
Q ss_pred CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCC----------CEEEEEeCCEEEEEEcCCCCCCC
Q psy16852 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE----------HYLITTVESVSTLEIINPTKEDI 74 (579)
Q Consensus 5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~----------~~~~~~~~~~~~L~i~~~~~~d~ 74 (579)
.+|.|...|.++.+.+|+.++|.|.+.+ .+.+.|+|||..|..+. ++.+...+..++|.|.+++.+|+
T Consensus 7 p~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~ 84 (112)
T 2e6q_A 7 GTARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDS 84 (112)
T ss_dssp SCCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTC
T ss_pred CCcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHC
Confidence 3578999999999999999999999986 66899999999998776 67766666678999999999999
Q ss_pred EEEEEEEEcCCeeeEEEEEEEEEec
Q psy16852 75 GVYTCKATNIGGVATCSANLIVLEK 99 (579)
Q Consensus 75 G~Y~C~~~~~~g~~~~~~~~~v~~~ 99 (579)
|.|+|..-+ ....++.|.|...
T Consensus 85 G~Y~~~~~~---~~~ssA~L~V~~~ 106 (112)
T 2e6q_A 85 GALVGFSCP---GVQDSAALTIQES 106 (112)
T ss_dssp SEEEEEEET---TEEEEEEEEEECS
T ss_pred ccEEEEEEC---CeeEEEEEEEeCC
Confidence 999774433 3456788998764
No 467
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}
Probab=99.54 E-value=7.1e-14 Score=108.47 Aligned_cols=89 Identities=22% Similarity=0.347 Sum_probs=78.5
Q ss_pred CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI 84 (579)
Q Consensus 5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 84 (579)
.||.|...|.+..+.+|++++|.|.+.+. +.+.|||+|..+..+.++.+...+....|.|.+++.+|+|.|+|.|
T Consensus 18 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a--- 92 (113)
T 2edh_A 18 LPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC--- 92 (113)
T ss_dssp SCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTTCEEEEEEE---
T ss_pred CCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhhCEEEEEEe---
Confidence 56789899999999999999999999764 6899999999998888888888888889999999999999999999
Q ss_pred CeeeEEEEEEEEEec
Q psy16852 85 GGVATCSANLIVLEK 99 (579)
Q Consensus 85 ~g~~~~~~~~~v~~~ 99 (579)
+.....+.|.|...
T Consensus 93 -~~~~~~~~l~V~~~ 106 (113)
T 2edh_A 93 -GKERTSAMLTVRAM 106 (113)
T ss_dssp -TTEEEEEEEEECCC
T ss_pred -CCCCEEEEEEEeCC
Confidence 55677788888654
No 468
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.54 E-value=5.4e-14 Score=134.64 Aligned_cols=165 Identities=12% Similarity=0.086 Sum_probs=110.1
Q ss_pred EccCCcEEEEEEEEee---cC-CeEEEEECCEEccCCCCce---EEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCcee
Q psy16852 117 AEAQSPATLKATVTGR---PT-PSICWYRGKEEILPDNGHT---MEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRA 189 (579)
Q Consensus 117 ~~~g~~~~l~C~~~~~---p~-~~i~W~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (579)
+.+|+.++|.|.+.+. |. ..|.||+++..+....... ...........|.|..++.+|+|.|+|.+.+..+..
T Consensus 180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 259 (376)
T 2aty_A 180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA 259 (376)
T ss_pred eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence 6789999999999887 32 4799999987654221110 110111123579999999999999999999886643
Q ss_pred EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-C-CCeEEEEECCEEeccCce---E-----E
Q psy16852 190 ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-P-TPEVKWFKNGKEIVSKDI---E-----T 259 (579)
Q Consensus 190 ~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~v~W~~~~~~i~~~~~---~-----~ 259 (579)
.....+.+. ..+..+|.+...+.......|+.++|.|.+.+. | ...|+|++||..+..... . .
T Consensus 260 ~~~~~v~~~-------~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt 332 (376)
T 2aty_A 260 PIEKTISKT-------KGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNES 332 (376)
T ss_pred ceEEEEcCC-------CCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCC
Confidence 332222211 012346666555554445568999999999985 4 448999999988743221 0 1
Q ss_pred eCCeEEEEEcccCCCCCeEEEEEEEcCCe
Q psy16852 260 KDNVTKLVIKQTTKKTTGKYEIRVVNEAG 288 (579)
Q Consensus 260 ~~~~~~l~i~~~~~~d~G~y~C~a~n~~g 288 (579)
....+.|.|.....+|.|.|+|+|.|...
T Consensus 333 y~~~s~L~i~~~~~~~~~~YtC~v~h~~l 361 (376)
T 2aty_A 333 YFVYSKLNVQKSNWEAGNTFTCSVLHEGL 361 (376)
T ss_pred EEEEEEEEEcHHHhCCCCcEEEEEEeCCC
Confidence 11235677777777889999999998764
No 469
>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...
Probab=99.54 E-value=3.4e-13 Score=119.76 Aligned_cols=197 Identities=13% Similarity=0.168 Sum_probs=118.6
Q ss_pred EEeccceeeeeeeeeec--cccCceeeeecCeeEEEeee-CCCeEEEEECCE----EccCCCeEEEEEC-CCCeEEEEEc
Q psy16852 298 ITVAEAETVMMDVRVES--HPTASFQWFIHSEPVVVTGK-PTPLVTWSHDGT----PMKEGKEVTIYQD-TDGLCKLAIS 369 (579)
Q Consensus 298 v~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~g~-p~~~i~W~~~~~----~~~~~~~~~~~~~-~~~~~~l~i~ 369 (579)
+.+.+|..+.|.|.... .....+.|+... .+. +...+.+..++. .-....++.+..+ ..+.+.|.|.
T Consensus 10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~-----~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 84 (230)
T 3n9g_H 10 EVRKPGASTKVSCKASGYTFTHYYMHWVRQA-----PGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELS 84 (230)
T ss_dssp EEECTTCCEEEEEEEESSCGGGSCEEEEEEC-----TTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred EEEcCCCCEEEEEEeecceecCcEEEEEEEC-----CCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEEC
Confidence 55788999999998764 233456665321 000 000111111110 0112245555443 3467789999
Q ss_pred ccCCCCCEEEEEEEEcCc-----e---eEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCC--CeE
Q psy16852 370 EVFPENAGLYSCTAVNPV-----G---EAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT--PSI 439 (579)
Q Consensus 370 ~~~~~d~G~Y~C~a~n~~-----g---~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~v 439 (579)
+++.+|+|.|.|.+.+.. + .......|.|.. ....+|.+........+..|+.++|.|.+.+.++ +.+
T Consensus 85 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~--~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v 162 (230)
T 3n9g_H 85 SLRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSS--ASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV 162 (230)
T ss_dssp SCCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECS--SCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEE
T ss_pred CCChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEe--cCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEE
Confidence 999999999999998754 1 112334566653 2224566653333334568999999999998543 378
Q ss_pred EEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEe
Q psy16852 440 CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAEN 519 (579)
Q Consensus 440 ~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 519 (579)
.| ++..+.... .-........|.|... +.|+|.....+| |.|+|.|.|
T Consensus 163 ~W--~~~~~~~~~---------------~~~~~~~~~~g~~~~~--------------s~L~i~~~~~~~-~~ytC~v~h 210 (230)
T 3n9g_H 163 SW--NSGALTSGV---------------HTFPAVLQSSGLYSLS--------------SVVTVPSSSLGT-QTYICNVNH 210 (230)
T ss_dssp EE--GGGTBCTTE---------------EECCCEECTTSCEEEE--------------EEEEEESTTBTT-BCCEEEEEE
T ss_pred EE--CCcccCCCe---------------EeCCceECCCCCEEEE--------------EEEEECHHHcCC-CeEEEEEEE
Confidence 99 554442210 0001112233555433 459999999999 999999999
Q ss_pred CCeeEEEEEEEEEe
Q psy16852 520 VAGSVTCTATLSLL 533 (579)
Q Consensus 520 ~~g~~~~~~~l~v~ 533 (579)
..+.......+.|.
T Consensus 211 ~~~~~~~~~~~~v~ 224 (230)
T 3n9g_H 211 KPSNTKVDKRVEPK 224 (230)
T ss_dssp GGGTEEEEEECCCC
T ss_pred CCCCcceEEEccCC
Confidence 99888777777653
No 470
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=5.2e-14 Score=108.65 Aligned_cols=95 Identities=28% Similarity=0.442 Sum_probs=77.6
Q ss_pred CCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCC-CCCeeEEEcCCCCeEEEEEccccCCCceeEEEE
Q psy16852 405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILP-DNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 483 (579)
Q Consensus 405 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 483 (579)
..+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+.. ..++.+..+
T Consensus 6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~------------------------ 61 (110)
T 2dm2_A 6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRD------------------------ 61 (110)
T ss_dssp SCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEEC------------------------
T ss_pred CCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEEC------------------------
Confidence 3588888888888999999999999999999999999999988865 333333220
Q ss_pred eecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 484 ASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 484 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
....+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus 62 ----------~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~ 101 (110)
T 2dm2_A 62 ----------LDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQ 101 (110)
T ss_dssp ----------TTCEEEEEESSCCTTTCSCCEEEEECTTCCEEECCCEEEE
T ss_pred ----------CCcEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEEE
Confidence 0122458999999999999999999999999999999986
No 471
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Probab=99.53 E-value=3.9e-14 Score=108.95 Aligned_cols=91 Identities=20% Similarity=0.348 Sum_probs=78.6
Q ss_pred cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
.-.||.|...|.++.+.+|+.++|.|.+.+. +.+.|+|++..+..+.++.+...+....|.|.+++.+|+|.|+|.+.
T Consensus 5 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 82 (108)
T 2dm7_A 5 SSGPARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCG 82 (108)
T ss_dssp SCCCCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEET
T ss_pred cCCCCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCCCCEEEEecCCEEEEEECCCCcccCEEEEEEEc
Confidence 3578999999999999999999999999764 68999999999988888888877788899999999999999999994
Q ss_pred cCCeeeEEEEEEEEEec
Q psy16852 83 NIGGVATCSANLIVLEK 99 (579)
Q Consensus 83 ~~~g~~~~~~~~~v~~~ 99 (579)
| ....+.+.|...
T Consensus 83 n----~~~~~~l~V~~~ 95 (108)
T 2dm7_A 83 Q----ERTSATLTVRAL 95 (108)
T ss_dssp T----EEEEEECEEECC
T ss_pred C----CEEEEEEEEecC
Confidence 3 466677777753
No 472
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=5.8e-14 Score=106.92 Aligned_cols=93 Identities=31% Similarity=0.423 Sum_probs=81.4
Q ss_pred cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82 (579)
Q Consensus 3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (579)
.-.||.|...|.++.+.+|+.++|.|.+ +.|.+.+.|+|++..+....++.+...+....|.|.+++.+|+|.|+|.
T Consensus 5 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~-- 81 (103)
T 2dku_A 5 SSGANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD-- 81 (103)
T ss_dssp SCCCCCCSSCCCCEEEETTSEEEEEEEC-SSCCSCCEEEESSCBCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEE--
T ss_pred CCCCCEeEecCCcEEEeCCCcEEEEEEe-CCCCCeEEEEeCCEECCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEE--
Confidence 3468999999999999999999999995 7788899999999999888888887777788999999999999999998
Q ss_pred cCCeeeEEEEEEEEEecc
Q psy16852 83 NIGGVATCSANLIVLEKE 100 (579)
Q Consensus 83 ~~~g~~~~~~~~~v~~~~ 100 (579)
.|.....+.|.|...+
T Consensus 82 --~g~~~~~~~l~V~~~p 97 (103)
T 2dku_A 82 --IGQAQSRAQLLVQGRR 97 (103)
T ss_dssp --CSSCBCCEEEEEECSC
T ss_pred --eCCceEEEEEEEeCcc
Confidence 4666667888887654
No 473
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=99.53 E-value=4.2e-14 Score=104.77 Aligned_cols=83 Identities=16% Similarity=0.235 Sum_probs=71.5
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG 85 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 85 (579)
++.|...|.+..+.+|+.++|.|.+.|.|.+.+.|+|+|..+..... ..|.|.+++.+|+|.|+|.+.|..
T Consensus 3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~---------~~L~i~~v~~~d~G~Y~C~a~n~~ 73 (91)
T 3bfo_A 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------KLYMVPYVDLEHQGTYWCHVYNDR 73 (91)
T ss_dssp CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCCS---------SEEEESSCCGGGCEEEEEEEECSS
T ss_pred ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCC---------CeEEECCCCHHhCEEEEEEEEcCC
Confidence 57788899999999999999999999999999999999998875532 579999999999999999999998
Q ss_pred eeeE-EEEEEEEE
Q psy16852 86 GVAT-CSANLIVL 97 (579)
Q Consensus 86 g~~~-~~~~~~v~ 97 (579)
|... ..+.+.|.
T Consensus 74 g~~~s~~~~l~V~ 86 (91)
T 3bfo_A 74 DSQDSKKVEIIID 86 (91)
T ss_dssp CEEECCCEEEEEC
T ss_pred CCEEeeeEEEEEe
Confidence 8654 34566663
No 474
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A
Probab=99.53 E-value=2.7e-14 Score=108.77 Aligned_cols=91 Identities=23% Similarity=0.341 Sum_probs=80.0
Q ss_pred CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
-.||.|...|.++.+.+|++++|.|.+.+.|.+ +.|++++..+..+.++.+...+....|.|.+++.+|+|.|+|.
T Consensus 6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~--- 81 (103)
T 2e7b_A 6 SGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS--- 81 (103)
T ss_dssp CCCCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEE---
T ss_pred CCCCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEE---
Confidence 468999999999999999999999999998888 9999999999878888888777788999999999999999998
Q ss_pred CCeeeEEEEEEEEEec
Q psy16852 84 IGGVATCSANLIVLEK 99 (579)
Q Consensus 84 ~~g~~~~~~~~~v~~~ 99 (579)
.|.....+.|.|...
T Consensus 82 -~g~~~~~~~l~V~~~ 96 (103)
T 2e7b_A 82 -FGDQTTSATLTVTAL 96 (103)
T ss_dssp -CSSCBCCBCEEEECC
T ss_pred -ECCcEEEEEEEEEec
Confidence 355666677777654
No 475
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.53 E-value=8.7e-14 Score=122.54 Aligned_cols=167 Identities=14% Similarity=0.226 Sum_probs=105.8
Q ss_pred cccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--E---Eec---------CCCCEEEEEe--CCEEEEEEcCCC
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--T---ELH---------ATEHYLITTV--ESVSTLEIINPT 70 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~---~~~---------~~~~~~~~~~--~~~~~L~i~~~~ 70 (579)
+...|..+.+.+|++++|.|.+.+.+ ...+.|||.. . .+. ...++..... .....|+|.+++
T Consensus 4 v~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 83 (229)
T 1hxm_A 4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS 83 (229)
T ss_dssp EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred cEeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCC
Confidence 55678889999999999999997543 3579999842 1 121 1356665543 457899999999
Q ss_pred CCCCEEEEEEEEcCC------ee--eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC-CeEEEE
Q psy16852 71 KEDIGVYTCKATNIG------GV--ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT-PSICWY 140 (579)
Q Consensus 71 ~~d~G~Y~C~~~~~~------g~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~ 140 (579)
.+|+|.|+|.+.+.. +. ....+.|.|........+|.+. +.. ..++|.|.+.++ |. ..|.|+
T Consensus 84 ~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~v~-------~~~-~~~~L~C~~~g~~P~~i~v~W~ 155 (229)
T 1hxm_A 84 ERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSVF-------VMK-NGTNVACLVKEFYPKDIRINLV 155 (229)
T ss_dssp GGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCEEE-------EEE-ETTEEEEEEESCBSSCCEEEEE
T ss_pred HhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCCcEE-------EcC-CCCeEEEEEEEEeCCCEEEEEe
Confidence 999999999998753 11 1123567776422111222222 111 224999999875 44 399999
Q ss_pred ECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852 141 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFG 187 (579)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 187 (579)
++ ..+..... .... ..++...+. .....++.|.|+|.+.|..+
T Consensus 156 ~~-~~~~~~~~-~~~~-~~dg~y~~~-~~~~~~~~~~ytC~V~h~~~ 198 (229)
T 1hxm_A 156 SS-KKITEFDP-AIVI-SPSGKYNAV-KLGKYEDSNSVTCSVQHDNK 198 (229)
T ss_dssp CS-SEEEECCC-EEEE-CTTSSEEEE-EEEEETTTTTCEEEEEETTE
T ss_pred cC-CEEecCcc-ceEE-CCCCcEEEE-ECcccCCCCcEEEEEEeCCC
Confidence 99 66543322 1222 223333333 22233688999999998764
No 476
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Probab=99.52 E-value=4.7e-14 Score=106.83 Aligned_cols=92 Identities=21% Similarity=0.373 Sum_probs=71.4
Q ss_pred CCeeecCC----CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEE
Q psy16852 407 APKFTKPL----KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 482 (579)
Q Consensus 407 ~p~~~~~~----~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 482 (579)
+|.+...+ ....+.+|+.+.|.|.+.|.|.|.+.|++++..+....+...
T Consensus 4 ~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~-------------------------- 57 (100)
T 3caf_A 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG-------------------------- 57 (100)
T ss_dssp EEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTC--------------------------
T ss_pred CCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCEEccccccccc--------------------------
Confidence 55555433 346788999999999999999999999999988865432110
Q ss_pred EeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852 483 KASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532 (579)
Q Consensus 483 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 532 (579)
.......+.|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 58 --------~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V 99 (100)
T 3caf_A 58 --------YKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99 (100)
T ss_dssp --------CEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred --------EEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEEEEEEEEE
Confidence 011123356999999999999999999999999998888876
No 477
>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B
Probab=99.51 E-value=2.9e-13 Score=122.38 Aligned_cols=195 Identities=14% Similarity=0.210 Sum_probs=111.7
Q ss_pred EEeccceeeeeeeeeeccc--cCceeeeecCeeEEEeeeCCCeEEEEECC-EE---ccCCCeEEEEEC-CCCeEEEEEcc
Q psy16852 298 ITVAEAETVMMDVRVESHP--TASFQWFIHSEPVVVTGKPTPLVTWSHDG-TP---MKEGKEVTIYQD-TDGLCKLAISE 370 (579)
Q Consensus 298 v~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~g~p~~~i~W~~~~-~~---~~~~~~~~~~~~-~~~~~~l~i~~ 370 (579)
+.+.+|+.+.|.|.+.... ...+.|+... .+.....+.....+ .. -....++.+..+ ..+.+.|.|.+
T Consensus 10 v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~-----~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 84 (263)
T 3iu4_H 10 GLVAPSQSLSITCTVSGFSLSRYSVHWVRQP-----PGKGLEWLGMIWGGGSTDYNSALKSRLSISKDNSKSQVFLKMNS 84 (263)
T ss_dssp SEECTTSCEEEEEEEESSCGGGSCEEEEEEC-----TTSCCEEEEEECTTSCEEECGGGTTCEEEEEEGGGTEEEEEECS
T ss_pred EEEcCCCCEEEEEEeccccCCceEEEEEEEC-----CCCCcEEEEEEeCCCcEeeCcccCCCEEEEecCCCCEEEEEECC
Confidence 4578899999999876422 3456665321 11111111111111 10 011245555433 34667899999
Q ss_pred cCCCCCEEEEEEEEcCc-----e---eEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCC--CeEE
Q psy16852 371 VFPENAGLYSCTAVNPV-----G---EAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT--PSIC 440 (579)
Q Consensus 371 ~~~~d~G~Y~C~a~n~~-----g---~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~v~ 440 (579)
++.+|+|.|.|.+.+.. + .......|.|.. ....+|.+........+..|+.++|.|.+.+.++ +.+.
T Consensus 85 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~t~l~V~~--~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~~~~P~~~~v~ 162 (263)
T 3iu4_H 85 LQTDDTAMYYCARSGVREGRAQAWFAYWGQGTLVTVSA--ASTKGPSVFPLAPSSKGSTSGTAALGCLVKDYFPEPVTVS 162 (263)
T ss_dssp CCGGGCEEEEEEEEECC---CEEEEEEECCCEEEEECS--SCCBCCEEEEECCCCCC----EEEEEEEEEEEBSSCCEEE
T ss_pred CCHHHCEEEEEEEEeCCCCccccccceeCCceEEEEec--ccCCCCEEEEccCccccccCCcEEEEEEEEeEeCCceEEE
Confidence 99999999999998763 1 111234566643 2224566653233334558999999999988543 5899
Q ss_pred EeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeC
Q psy16852 441 WYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENV 520 (579)
Q Consensus 441 W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 520 (579)
| ++..+.... ..........|.|... +.|+|.....+| |.|+|.|.|.
T Consensus 163 W--~~~~~~~~~---------------~~~~~~~~~~g~~~~~--------------s~L~i~~~~~~~-~~ytC~v~h~ 210 (263)
T 3iu4_H 163 W--NSGALTSGV---------------HTFPAVLQSSGLYSLS--------------SVVTVPSSSLGT-QTYICNVNHK 210 (263)
T ss_dssp E--GGGTBCTTE---------------EECCCEECTTSCEEEE--------------EEEEEETTHHHH-CCCEEEEEEG
T ss_pred E--CCcccCCce---------------eecCceECCCCCEEEE--------------EEEEECHhHcCC-CEEEEEEEEC
Confidence 9 443332110 0011112334555433 349999999999 9999999999
Q ss_pred CeeEEEEEEEE
Q psy16852 521 AGSVTCTATLS 531 (579)
Q Consensus 521 ~g~~~~~~~l~ 531 (579)
.+.......+.
T Consensus 211 ~~~~~~~~~~~ 221 (263)
T 3iu4_H 211 PSNTKVDKKVE 221 (263)
T ss_dssp GGTEEEEEECC
T ss_pred CCCcceeEEEc
Confidence 88766655554
No 478
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=99.51 E-value=2.5e-13 Score=104.20 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=71.7
Q ss_pred CCeeecCCCceeeecCCCeEEEEEEEeeCC---CeEEEeeCCEEcCC---CCCeeEEEcCCCCeEEEEEccccCCCceeE
Q psy16852 407 APKFTKPLKPVIAEAQSPATLKATVTGRPT---PSICWYRGKEEILP---DNGHTMEFNPTTGECVLSISEATPQDEAVY 480 (579)
Q Consensus 407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~---~~v~W~~~~~~l~~---~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 480 (579)
.|.|...+....+.+|+.++|.|.+.|.|. |.|.|+|++..... ..++.+.. .....
T Consensus 4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~-------------~~~~~---- 66 (108)
T 3cx2_A 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHD-------------SYDRA---- 66 (108)
T ss_dssp CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEE-------------EEETT----
T ss_pred ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEee-------------EEecc----
Confidence 577777788889999999999999999998 99999997622111 11111100 00000
Q ss_pred EEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 481 SVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 481 ~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.....+.|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 67 ------------~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 67 ------------SKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107 (108)
T ss_dssp ------------TTEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred ------------cccceEEEEEecCCCccCEEEEEEEecCCCceEEEEEEEEe
Confidence 01124569999999999999999999999999999999875
No 479
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=2.1e-13 Score=105.82 Aligned_cols=90 Identities=23% Similarity=0.401 Sum_probs=75.7
Q ss_pred CCCccccccCc---eeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852 5 LAPRFIEKIQP---VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81 (579)
Q Consensus 5 ~~p~~~~~p~~---~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (579)
-||.++..|.. +.+.+|+.+.|.|.+. .|.+.+.|||+|..+..+.++.+...+....|.|.+++.+|+|.|+|.+
T Consensus 9 ~pp~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 87 (113)
T 2cpc_A 9 DVSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEI 87 (113)
T ss_dssp SCSCSEEESCSCEEEEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEEEES
T ss_pred cCCcEEEccCCceeEEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEEEEE
Confidence 36667676766 7889999999999995 7778999999999998877877777677789999999999999999999
Q ss_pred EcCCeeeEEEEEEEEEec
Q psy16852 82 TNIGGVATCSANLIVLEK 99 (579)
Q Consensus 82 ~~~~g~~~~~~~~~v~~~ 99 (579)
.| ....+.|.|..+
T Consensus 88 ~n----~~~~~~l~V~~~ 101 (113)
T 2cpc_A 88 DD----ESASFTVTVTEP 101 (113)
T ss_dssp SS----CEEEEEEEEECC
T ss_pred ec----CcEEEEEEEecC
Confidence 87 455677888754
No 480
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*
Probab=99.50 E-value=2e-15 Score=132.56 Aligned_cols=170 Identities=15% Similarity=0.097 Sum_probs=105.9
Q ss_pred ecCCCceEEccCCcEEEEEEEEeecC---CeEEEEECCEEccCCCCce-E-EEc-CCCCeEEEEECcCCCCCCeEEEEEE
Q psy16852 109 TKPLKPVIAEAQSPATLKATVTGRPT---PSICWYRGKEEILPDNGHT-M-EFN-PTTGECVLSISEATPQDEAVYSVKA 182 (579)
Q Consensus 109 ~~~~~~~~~~~g~~~~l~C~~~~~p~---~~i~W~~~~~~~~~~~~~~-~-~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~ 182 (579)
...+....+.+|+.++|.|.+.++++ +.|.| ++..+....... . ... .......|.|.++..+|+|.|+|.+
T Consensus 8 ~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y~C~~ 85 (214)
T 1ow0_A 8 LHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTA 85 (214)
T ss_dssp EECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB--SSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEE
T ss_pred EECcChHHhccCCCcEEEEEEeeeECCCCeEEEE--cCCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCeEEEEE
Confidence 34456666789999999999988754 68999 433332110000 0 000 0013457888889999999999999
Q ss_pred EcCCceeEEEEEEEEeeccccCCCCccCCCeEecc-CCceeeCCCCeEEEEEEEEcc-CC-CeEEEEECCEEeccCc---
Q psy16852 183 VNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRP-LQALLVPKDSTVTLEAEYTGT-PT-PEVKWFKNGKEIVSKD--- 256 (579)
Q Consensus 183 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~i~~~~--- 256 (579)
.+..+.......+.+ ..+..+|.+... +....+..|+.++|.|.+.|. |. +.+.|++||..+....
T Consensus 86 ~~~~~~~~~~~~i~~--------~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~ 157 (214)
T 1ow0_A 86 AYPESKTPLTATLSK--------SGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLT 157 (214)
T ss_dssp CCSSCSSCEEEEEEC--------CSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEE
T ss_pred ecCCCCCceeEeecc--------CCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceee
Confidence 987664333333321 012345655332 222336679999999999984 54 4999999999886542
Q ss_pred --eEEe---CC-----eEEEEEcccCCCCCeEEEEEEEcCCe
Q psy16852 257 --IETK---DN-----VTKLVIKQTTKKTTGKYEIRVVNEAG 288 (579)
Q Consensus 257 --~~~~---~~-----~~~l~i~~~~~~d~G~y~C~a~n~~g 288 (579)
.... .. .+.|.+.....++.|.|+|+|.|...
T Consensus 158 ~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l 199 (214)
T 1ow0_A 158 WASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL 199 (214)
T ss_dssp CCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred cCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCC
Confidence 1111 11 12344554444568999999999764
No 481
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.2e-14 Score=111.64 Aligned_cols=92 Identities=27% Similarity=0.331 Sum_probs=76.9
Q ss_pred CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEE-eCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITT-VESVSTLEIINPTKEDIGVYTCKATN 83 (579)
Q Consensus 5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (579)
.|+.|...|.++.+.+|+.++|.|.+.+.|.+.+.|||+|..+..+.++.+.. .+....|.|.+++.+|+|.|+|.+
T Consensus 12 ~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-- 89 (115)
T 2cr6_A 12 RRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA-- 89 (115)
T ss_dssp SCCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEEE--
T ss_pred CCCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEEE--
Confidence 34578888999999999999999999998988999999999998776655442 245678999999999999999995
Q ss_pred CCeeeEEEEEEEEEecc
Q psy16852 84 IGGVATCSANLIVLEKE 100 (579)
Q Consensus 84 ~~g~~~~~~~~~v~~~~ 100 (579)
|.....+.|.|..++
T Consensus 90 --g~~~~~~~L~V~~~p 104 (115)
T 2cr6_A 90 --GDQRASAALRVTEKP 104 (115)
T ss_dssp --TTEECCEEEEEECCS
T ss_pred --CCeeEEEEEEEECCC
Confidence 566777888887643
No 482
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Probab=99.49 E-value=3.2e-15 Score=117.88 Aligned_cols=95 Identities=24% Similarity=0.260 Sum_probs=74.4
Q ss_pred CCeeecCCCceeeecCCCeEEEEEEEeeCCCe-EEEeeCCEEcCC--CCCeeEEEcCCCCeEEEEEccccCCCceeEEEE
Q psy16852 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPS-ICWYRGKEEILP--DNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 483 (579)
Q Consensus 407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~-v~W~~~~~~l~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 483 (579)
+|.+.. +....+.+|+.+.|.|.+.|.|.|. +.|++++..+.. ..++.+...
T Consensus 14 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~------------------------ 68 (122)
T 2cry_A 14 PPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETI------------------------ 68 (122)
T ss_dssp SCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEE------------------------
T ss_pred CCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEe------------------------
Confidence 777776 6777899999999999999999996 999999988754 233332110
Q ss_pred eecceeeeeeeCCeeEEEEeecccccc-eeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 484 ASSTETKIMTDGNRSVLLISKITRDQI-GDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 484 ~~~~~~~~~~~~~~~~l~i~~~~~~d~-G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
...++..+.|.|.+++.+|+ |.|+|.|.|.+|.....+.|.|+
T Consensus 69 -------~~~~~~~~~L~I~~v~~~D~~G~Y~C~a~N~~G~~~~~~~l~V~ 112 (122)
T 2cry_A 69 -------STEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ 112 (122)
T ss_dssp -------EETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEEEEEECCCCS
T ss_pred -------cCCCceEEEEEEcCCChhhCCceEEEEEECCCCeEEEEEEEEEC
Confidence 00012256799999999999 99999999999999988888875
No 483
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=99.49 E-value=2.3e-13 Score=100.78 Aligned_cols=83 Identities=12% Similarity=0.220 Sum_probs=68.0
Q ss_pred CCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS 486 (579)
Q Consensus 407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 486 (579)
++.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....+
T Consensus 3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~--------------------------------- 49 (91)
T 3bfo_A 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK--------------------------------- 49 (91)
T ss_dssp CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCCS---------------------------------
T ss_pred ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCC---------------------------------
Confidence 45566666777899999999999999999999999999988754321
Q ss_pred ceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEE-EEEEEEEe
Q psy16852 487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT-CTATLSLL 533 (579)
Q Consensus 487 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~ 533 (579)
+.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|.
T Consensus 50 -----------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~ 86 (91)
T 3bfo_A 50 -----------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID 86 (91)
T ss_dssp -----------SEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEEC
T ss_pred -----------CeEEECCCCHHhCEEEEEEEEcCCCCEEeeeEEEEEe
Confidence 2489999999999999999999999755 45666653
No 484
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}
Probab=99.49 E-value=2.6e-13 Score=104.42 Aligned_cols=92 Identities=21% Similarity=0.291 Sum_probs=74.1
Q ss_pred CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCE-Eec-------CCCCEEEEEe-CCEEEEEEcCCCCCCCEE
Q psy16852 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGT-ELH-------ATEHYLITTV-ESVSTLEIINPTKEDIGV 76 (579)
Q Consensus 6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~-~~~-------~~~~~~~~~~-~~~~~L~i~~~~~~d~G~ 76 (579)
+|.|...|.++.+.+|++++|.|.+.+.+.+.+.|++++. .+. ...++..... ....+|.|.+++.+|+|.
T Consensus 6 ~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~ 85 (108)
T 3m45_A 6 SQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQ 85 (108)
T ss_dssp --CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGCEE
T ss_pred CCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHCeE
Confidence 5778889999999999999999999988888999999875 221 2235554332 347899999999999999
Q ss_pred EEEEEEcCCeeeEEEEEEEEEe
Q psy16852 77 YTCKATNIGGVATCSANLIVLE 98 (579)
Q Consensus 77 Y~C~~~~~~g~~~~~~~~~v~~ 98 (579)
|+|.+.| .+.....+.|.|.+
T Consensus 86 Y~C~~~n-~~~~~~~~~L~V~~ 106 (108)
T 3m45_A 86 YTCSLFT-MPVKTSKAYLTVLG 106 (108)
T ss_dssp EEEEECS-SSCEEEEEEEEEEC
T ss_pred EEEEEEc-CCCcEEEEEEEEEc
Confidence 9999999 78788888888864
No 485
>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H
Probab=99.49 E-value=1.8e-13 Score=121.09 Aligned_cols=170 Identities=13% Similarity=0.168 Sum_probs=107.1
Q ss_pred ceEEccCCcEEEEEEEEee--cCCeEEEEECC--E---Ec---c-----------CCCCceEEEcCCCCeEEEEECcCCC
Q psy16852 114 PVIAEAQSPATLKATVTGR--PTPSICWYRGK--E---EI---L-----------PDNGHTMEFNPTTGECVLSISEATP 172 (579)
Q Consensus 114 ~~~~~~g~~~~l~C~~~~~--p~~~i~W~~~~--~---~~---~-----------~~~~~~~~~~~~~~~~~l~i~~~~~ 172 (579)
.+.+.+|++++|.|.+.+. +...+.||+.. . .+ . ...++.+..+...+..+|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (226)
T 3mlr_H 9 GEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQA 88 (226)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCG
T ss_pred CEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCc
Confidence 5678899999999999753 34789999842 1 11 0 1123444444445678899999999
Q ss_pred CCCeEEEEEEEcCCc-------eeE--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cC-CC
Q psy16852 173 QDEAVYSVKAVNTFG-------RAE--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TP-TP 241 (579)
Q Consensus 173 ~d~G~Y~C~~~~~~~-------~~~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~~ 241 (579)
+|+|.|.|.+.+..+ ... ....+.+.. ....+|.+........+..|..+.|.|.+.+ .| .+
T Consensus 89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~-------~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~ 161 (226)
T 3mlr_H 89 SDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSS-------GTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV 161 (226)
T ss_dssp GGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECC-------CCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCC
T ss_pred ccCEEEEEeEccCCCcccccchhhhhCCccEEeecc-------CCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCe
Confidence 999999999976421 000 112333321 1123455543333333568999999999987 44 34
Q ss_pred eEEEEECCEEeccCc-----e----EEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEE
Q psy16852 242 EVKWFKNGKEIVSKD-----I----ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTS 293 (579)
Q Consensus 242 ~v~W~~~~~~i~~~~-----~----~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~ 293 (579)
.+.| ++..+.... . ......+.|.|.....+| |.|+|.|.|..+.....
T Consensus 162 ~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~ 219 (226)
T 3mlr_H 162 TVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD 219 (226)
T ss_dssp EEEE--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEE
T ss_pred EEEE--CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCeE
Confidence 8999 443322111 0 111123578899998889 99999999987654433
No 486
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.3e-13 Score=105.17 Aligned_cols=98 Identities=19% Similarity=0.272 Sum_probs=71.5
Q ss_pred CCeeecCCCceeeecCCCeEEEEEEEee---CCCeEEEeeCCE-EcCCC--CCeeEEEcCCCCeEEEEEccccCCCceeE
Q psy16852 407 APKFTKPLKPVIAEAQSPATLKATVTGR---PTPSICWYRGKE-EILPD--NGHTMEFNPTTGECVLSISEATPQDEAVY 480 (579)
Q Consensus 407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~---p~~~v~W~~~~~-~l~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 480 (579)
.+.|+..+..+.+.+|+.++|.|.+.|. |.|.|.|||++. .+... .++.+.. .....
T Consensus 12 ~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~-------------~~~~~---- 74 (118)
T 2edn_A 12 TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKE-------------SHNSA---- 74 (118)
T ss_dssp SSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEE-------------EECSS----
T ss_pred cceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEecc-------------ccccc----
Confidence 4566677788899999999999999875 789999999752 22211 1222210 00000
Q ss_pred EEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 481 SVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 481 ~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.....+.|+|.++..+|+|.|+|.|.|..|..++.+.|.|+
T Consensus 75 ------------~~~~~~~L~I~~v~~~D~G~Y~Cevsn~~g~~s~~~~L~V~ 115 (118)
T 2edn_A 75 ------------SNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVE 115 (118)
T ss_dssp ------------SCEEEEEEEESSCCTTTCSCEEEEEECSSCEEEEEECCEEE
T ss_pred ------------cccceEEEEEeeCChhhCEEEEEEEEEcCCcEEEEEEEEEE
Confidence 01124569999999999999999999999999999999986
No 487
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}
Probab=99.48 E-value=1.7e-12 Score=120.87 Aligned_cols=168 Identities=17% Similarity=0.174 Sum_probs=105.1
Q ss_pred ccCceeeeCCCCEEEEEEEEeeC--------------CCeeEEEEC--CE--E-e-c-CC----------CCEEEE----
Q psy16852 12 KIQPVVSHQEQPALFTCKVEGHP--------------LPTMTWQKD--GT--E-L-H-AT----------EHYLIT---- 56 (579)
Q Consensus 12 ~p~~~~v~~G~~~~l~C~~~~~~--------------~~~v~W~~~--g~--~-~-~-~~----------~~~~~~---- 56 (579)
++..+.+.+|++++|.|.....+ ...+.||+. |. . + . .+ ....+.
T Consensus 164 q~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~ 243 (401)
T 3f8u_B 164 HTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDD 243 (401)
T ss_dssp SCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESC
T ss_pred CCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeecc
Confidence 56779999999999999986443 236999872 32 1 1 0 10 111111
Q ss_pred -----EeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceE-EccCC-cEEEEEEE
Q psy16852 57 -----TVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVI-AEAQS-PATLKATV 129 (579)
Q Consensus 57 -----~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~g~-~~~l~C~~ 129 (579)
...++.+|+|.+++.+|+|.|+|.+.+..+.....+.+.|.. +|.+...+.... +..|+ .++|.|.+
T Consensus 244 ~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~------pP~V~v~p~~~~~~~~G~~~vtL~C~a 317 (401)
T 3f8u_B 244 DEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYK------PPKVSLMPATLARAAPGEAPPELLCLV 317 (401)
T ss_dssp CCSSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEB------CCEEEEESSSCCCCCTTCCCCCEEEEE
T ss_pred cccccccCCcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeecc------CCeEeeccCcceeecCCCccEEEEEEe
Confidence 122468999999999999999999999888777777777764 334433333322 34676 79999999
Q ss_pred Eee-cC--CeEEEE-ECCE---EccCCCC---ceEEEcCCCC----eEEEEECcCCC-CCCeEEEEEEEcCC
Q psy16852 130 TGR-PT--PSICWY-RGKE---EILPDNG---HTMEFNPTTG----ECVLSISEATP-QDEAVYSVKAVNTF 186 (579)
Q Consensus 130 ~~~-p~--~~i~W~-~~~~---~~~~~~~---~~~~~~~~~~----~~~l~i~~~~~-~d~G~Y~C~~~~~~ 186 (579)
.++ |. +.|+|+ +++. .+..... .....+ .++ .+.|.+...+. ++.+.|+|.+.|..
T Consensus 318 ~GfyP~~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~-~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~s 388 (401)
T 3f8u_B 318 SHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHH-SDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS 388 (401)
T ss_dssp EEEBSSTTCEEEEEEESSSSCSCEECCSEEEECCCEEC-TTSCEEEEEEEECCCCCGGGTTCEEEEEEECTT
T ss_pred cCCcCCCCcEEEEEecCCCCCceecccccccccccccC-CCceEEEEEEEEEccCccccCCCEEEEEEEcCC
Confidence 875 55 699995 7651 1111100 000111 122 13466665543 34459999999875
No 488
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.48 E-value=2.3e-13 Score=103.47 Aligned_cols=87 Identities=21% Similarity=0.362 Sum_probs=69.7
Q ss_pred CCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCC--CeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN--GHTMEFNPTTGECVLSISEATPQDEAVYSVKA 484 (579)
Q Consensus 407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~ 484 (579)
++.+...+....+.+|+.++|.|.+.+ |.+.+.|+|++..+..+. ++.+.
T Consensus 7 p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~--------------------------- 58 (103)
T 1x44_A 7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIR--------------------------- 58 (103)
T ss_dssp SCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEE---------------------------
T ss_pred CceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEE---------------------------
Confidence 444777788889999999999999987 779999999999987665 33432
Q ss_pred ecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 485 SSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 485 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.++....|.|.+++.+|+|.|+|.|.| ...++.|.|.
T Consensus 59 --------~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~~~l~V~ 95 (103)
T 1x44_A 59 --------VEGKKHILIIEGATKADAAEYSVMTTG----GQSSAKLSVD 95 (103)
T ss_dssp --------EETTEEEEEEEEECTTTCSEEEEEETT----EEEEEEEEEE
T ss_pred --------EcCCEEEEEECCCCcccCEEEEEEECC----CcEEEEEEEe
Confidence 244556799999999999999999988 4666777765
No 489
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=99.48 E-value=2.5e-13 Score=106.21 Aligned_cols=97 Identities=25% Similarity=0.330 Sum_probs=77.1
Q ss_pred CCcCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeC----CEEEEEEcCCCCCCCEE
Q psy16852 1 MAEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVE----SVSTLEIINPTKEDIGV 76 (579)
Q Consensus 1 ~~~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~----~~~~L~i~~~~~~d~G~ 76 (579)
|....||.+...+... + .+...|.|.+.|.|.+.+.|+|+|..+..+......... ....|.|.+++.+|+|.
T Consensus 3 L~V~~pP~i~~~~~~~-~--~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 79 (118)
T 1wwc_A 3 LTVYYPPRVVSLEEPE-L--RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGN 79 (118)
T ss_dssp -CCCCCCCCCCCCCCC-C--CCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred EEEecCCceeccCCCe-e--ccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEE
Confidence 3456788877764433 2 366789999999999999999999999877766554332 35789999999999999
Q ss_pred EEEEEEcCCeeeEEEEEEEEEecc
Q psy16852 77 YTCKATNIGGVATCSANLIVLEKE 100 (579)
Q Consensus 77 Y~C~~~~~~g~~~~~~~~~v~~~~ 100 (579)
|+|.|.|..|....++.+.|...|
T Consensus 80 Y~C~a~N~~G~~~~~~~l~v~~~P 103 (118)
T 1wwc_A 80 YTLIAKNPLGTANQTINGHFLKEP 103 (118)
T ss_dssp EEEEEEETTEEEEEEEEECCSCCC
T ss_pred EEEEEECCCCeEeeEEEEEEccCC
Confidence 999999999999988888776543
No 490
>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*
Probab=99.47 E-value=1.9e-12 Score=116.97 Aligned_cols=196 Identities=14% Similarity=0.190 Sum_probs=113.7
Q ss_pred EEeccceeeeeeeeeecc--ccCceeeeecCeeEEEeeeCCCeE-EEEECC-EE---ccCCCeEEEEEC-CCCeEEEEEc
Q psy16852 298 ITVAEAETVMMDVRVESH--PTASFQWFIHSEPVVVTGKPTPLV-TWSHDG-TP---MKEGKEVTIYQD-TDGLCKLAIS 369 (579)
Q Consensus 298 v~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~g~p~~~i-~W~~~~-~~---~~~~~~~~~~~~-~~~~~~l~i~ 369 (579)
+.+.+|+.+.|.|..... ....+.|+... .+.....+ ....++ .. -....++....+ ..+.++|.|.
T Consensus 33 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 107 (256)
T 3sob_H 33 GLVQPGGSLRLSCAASGFTFTNSYIHWVRQA-----PGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMN 107 (256)
T ss_dssp CEECTTCCEEEEEEEESSCGGGSCEEEEEEC-----TTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred EEEcCCCCEEEEEEeeccccCCCEEEEEEEC-----CCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEEC
Confidence 457889999999987642 23456664321 11111111 111111 10 011245555433 3466789999
Q ss_pred ccCCCCCEEEEEEEEcCce-----------eEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEee-C-C
Q psy16852 370 EVFPENAGLYSCTAVNPVG-----------EAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-P-T 436 (579)
Q Consensus 370 ~~~~~d~G~Y~C~a~n~~g-----------~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p-~ 436 (579)
+++.+|+|.|.|.+.+..+ .......|.|.. ....+|.+........+..|+.++|.|.+.+. | .
T Consensus 108 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~--~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~ 185 (256)
T 3sob_H 108 SLRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSS--ASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP 185 (256)
T ss_dssp SCCGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECS--SCCBCCEEEEECCC-----TTEEEEEEEEEEEBSSC
T ss_pred CCCcccCEEEEEEEecCCCccccccccceeEECCCEEEEEec--CCCCCCEEEEECCCcccccCCcEEEEEEEEEEECCC
Confidence 9999999999999987531 122334566653 22345666533333345689999999999874 4 3
Q ss_pred CeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEE
Q psy16852 437 PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCR 516 (579)
Q Consensus 437 ~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 516 (579)
+.+.| ++..+.... .-........|.|... +.|+|.....+| |.|+|.
T Consensus 186 ~~v~W--~~~~~~~~~---------------~~~~~~~~~~g~~~~~--------------s~L~i~~~~~~d-~~ytC~ 233 (256)
T 3sob_H 186 VTVSW--NSGALTSGV---------------HTFPAVLQSSGLYSLS--------------SVVTVPSSSLGT-QTYICN 233 (256)
T ss_dssp CEEEE--GGGTBCTTE---------------EECCCEECTTSCEEEE--------------EEEEEEGGGTTT-CCCEEE
T ss_pred eEEEE--CCcccCCCe---------------EeCCceeCCCCCEEEE--------------EEEEECHHHcCC-ceEEEE
Confidence 47999 444332110 0001112233555432 449999999999 999999
Q ss_pred EEeCCeeEEEEEEEEE
Q psy16852 517 AENVAGSVTCTATLSL 532 (579)
Q Consensus 517 a~n~~g~~~~~~~l~v 532 (579)
|.|..+.......+.+
T Consensus 234 v~~~~~~~~~~~~~~~ 249 (256)
T 3sob_H 234 VNHKPSNTKVDKKVEP 249 (256)
T ss_dssp EEEGGGTEEEEEECCC
T ss_pred EEeCCCCcceEEEecc
Confidence 9999988777777664
No 491
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.47 E-value=5.8e-13 Score=115.78 Aligned_cols=167 Identities=13% Similarity=0.158 Sum_probs=102.0
Q ss_pred ecCCCceEEccCCcEEEEEEEEeecCCeEEEEECC--E---Ecc-------CCCCceEEEc-CCCCeEEEEECcCCCCCC
Q psy16852 109 TKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGK--E---EIL-------PDNGHTMEFN-PTTGECVLSISEATPQDE 175 (579)
Q Consensus 109 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~---~~~-------~~~~~~~~~~-~~~~~~~l~i~~~~~~d~ 175 (579)
...+..+.+.+|+.++|.|.+.+.+ ..+.||+.. . .+. ...+..+..+ ...+..+|.|.+++.+|+
T Consensus 5 ~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~ 83 (207)
T 1ypz_E 5 EQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDS 83 (207)
T ss_dssp EESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGC
T ss_pred EECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHC
Confidence 3345667889999999999997543 489999853 1 111 1234444443 336678999999999999
Q ss_pred eEEEEEEEcCCc---------ee--EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CC-Ce
Q psy16852 176 AVYSVKAVNTFG---------RA--ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PT-PE 242 (579)
Q Consensus 176 G~Y~C~~~~~~~---------~~--~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~ 242 (579)
|.|.|.+.+..+ .. .....+.|.... ....+|.+.. ..+ .+.|.|.+.+. |. +.
T Consensus 84 G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~-----~~~~~P~v~~-------~~~-~~~l~C~~~g~~P~~~~ 150 (207)
T 1ypz_E 84 GTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKS-----QPPAKPSVFI-------MKN-GTNVACLVKDFYPKEVT 150 (207)
T ss_dssp EEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCC-----CCCCCCEEEE-------EEE-TTEEEEEEEEESSSCCE
T ss_pred EEEEEEEecCCcccccccccceeeecCccEEEEccCC-----CCCCCCeEEE-------eCC-CCeEEEEEeeEeCCCeE
Confidence 999999987632 11 112344443210 0112333321 111 26999999874 54 69
Q ss_pred EEEEECCEEeccCceE-EeCCeEEEEEcccCC-CCCeEEEEEEEcCCeee
Q psy16852 243 VKWFKNGKEIVSKDIE-TKDNVTKLVIKQTTK-KTTGKYEIRVVNEAGEA 290 (579)
Q Consensus 243 v~W~~~~~~i~~~~~~-~~~~~~~l~i~~~~~-~d~G~y~C~a~n~~g~~ 290 (579)
+.|+++ ..+...... .......+.+..... ++.|.|+|.|.|..+..
T Consensus 151 v~W~~~-~~l~~~~~~~~~~~~g~y~~~~~~~~~~~~~ytC~v~~~~~~~ 199 (207)
T 1ypz_E 151 ISLRSS-KKIVEFDPAIVISPSGKYSAVKLGQYGDSNSVTCSVQHNSETV 199 (207)
T ss_dssp EEEECS-SEEEECCCEEEECTTSSEEEEECEEESSTTTCEEEEEETTEEE
T ss_pred EEEecC-CcccCCccceEEcCCCcEEEEEeecccCCCcEEEEEEECCccE
Confidence 999999 666543211 111112233333333 67899999999987653
No 492
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=107.10 Aligned_cols=100 Identities=24% Similarity=0.426 Sum_probs=78.3
Q ss_pred eeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEE
Q psy16852 388 GEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467 (579)
Q Consensus 388 g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l 467 (579)
|....++.|.|.. .+|.+...+....+.+|+.+.|.|.+.+. |.+.|+|++..+..+.++.+..
T Consensus 5 g~~~~~~~l~V~~-----~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~--------- 68 (113)
T 2edh_A 5 SSGRTSAMLTVRA-----LPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQ--------- 68 (113)
T ss_dssp CCCCCCCCCCCCC-----SCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEE---------
T ss_pred CCCcEEEEEEEEc-----CCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEE---------
Confidence 4444555666665 35788777888899999999999999764 6899999999887666655432
Q ss_pred EEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 468 ~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
++..+.|.|.+++.+|+|.|+|.| |....++.|.|.
T Consensus 69 --------------------------~~~~~~L~I~~v~~~D~G~Y~C~a----~~~~~~~~l~V~ 104 (113)
T 2edh_A 69 --------------------------DGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVR 104 (113)
T ss_dssp --------------------------ETTEEEEEECSCCSTTCEEEEEEE----TTEEEEEEEEEC
T ss_pred --------------------------CCCEEEEEECCCChhhCEEEEEEe----CCCCEEEEEEEe
Confidence 444566999999999999999999 777888888875
No 493
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=99.47 E-value=3.4e-13 Score=105.43 Aligned_cols=93 Identities=19% Similarity=0.272 Sum_probs=69.3
Q ss_pred CCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS 486 (579)
Q Consensus 407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 486 (579)
+|.+..... .. ..+...|.|.+.|.|.|.+.|+|+|..+..+.+..+.....
T Consensus 8 pP~i~~~~~-~~--~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~------------------------- 59 (118)
T 1wwc_A 8 PPRVVSLEE-PE--LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQE------------------------- 59 (118)
T ss_dssp CCCCCCCCC-CC--CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEEC-------------------------
T ss_pred CCceeccCC-Ce--eccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEecc-------------------------
Confidence 666554322 12 23667899999999999999999999997765544322000
Q ss_pred ceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 487 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.....+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 60 ------~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~ 100 (118)
T 1wwc_A 60 ------GEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFL 100 (118)
T ss_dssp ------SSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCS
T ss_pred ------CccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEEEEc
Confidence 01134569999999999999999999999999999998864
No 494
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=9.3e-14 Score=104.66 Aligned_cols=86 Identities=19% Similarity=0.386 Sum_probs=72.4
Q ss_pred cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeee
Q psy16852 9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA 88 (579)
Q Consensus 9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~ 88 (579)
...+|..+.+.+|+.++|.|.+.+.| +.+.|+|++..+....++.+. ...|.|.+++.+|+|.|+|.|.|..|..
T Consensus 6 ~~~~p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~n~~g~~ 80 (99)
T 2cr3_A 6 SGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRIT----GEEVEVQDSVPADSGLYACVTSSPSGSD 80 (99)
T ss_dssp CSCCEEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEEC----SSEEEETTCCTTTCEEEEEEEEETTEEE
T ss_pred CCCCCcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEE----CCEEEEccCCHHHCEEEEEEEEeCCceE
Confidence 34567889999999999999998876 699999999988766665443 3589999999999999999999999988
Q ss_pred EEEEEEEEEec
Q psy16852 89 TCSANLIVLEK 99 (579)
Q Consensus 89 ~~~~~~~v~~~ 99 (579)
...+.|.|...
T Consensus 81 ~~~~~l~V~~~ 91 (99)
T 2cr3_A 81 TTYFSVNVSDA 91 (99)
T ss_dssp EEEEEECBCSC
T ss_pred EEEEEEEEecC
Confidence 77777777653
No 495
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.8e-13 Score=103.85 Aligned_cols=89 Identities=15% Similarity=0.259 Sum_probs=72.3
Q ss_pred CCCeeecCCCceeeecCCCeEEEEEEEeeCCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 484 (579)
Q Consensus 406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~ 484 (579)
.++.|..++.+..+.+|+.++|.|.+.+.|.+ .+.|+|+|..+..+.++.+..
T Consensus 7 ~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~-------------------------- 60 (104)
T 2eny_A 7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATR-------------------------- 60 (104)
T ss_dssp CCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEE--------------------------
T ss_pred CCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEE--------------------------
Confidence 36778888888999999999999999988754 899999999987766655433
Q ss_pred ecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 485 SSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 485 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
++..+.|.|.+++.+|+|.|+|.|.| ...++.|.|.
T Consensus 61 ---------~~~~~~L~I~~v~~~D~G~Y~C~a~~----~~~~a~L~V~ 96 (104)
T 2eny_A 61 ---------QGRKYILVVREAAPSDAGEVVFSVRG----LTSKASLIVR 96 (104)
T ss_dssp ---------ETTEEEEEECSCCTTTCSCEEEEETT----EEEEECEEEE
T ss_pred ---------cCCEEEEEECCCCHHHCEEEEEEECC----eeEEEEEEEe
Confidence 44556799999999999999999844 5678888875
No 496
>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}
Probab=99.46 E-value=1.8e-13 Score=124.32 Aligned_cols=177 Identities=14% Similarity=0.182 Sum_probs=106.9
Q ss_pred cccCceeeeCCCCEEEEEEEEee--CCCeeEEEECC--E---Ee---c-----------CCCCEEEEEeC--CEEEEEEc
Q psy16852 11 EKIQPVVSHQEQPALFTCKVEGH--PLPTMTWQKDG--T---EL---H-----------ATEHYLITTVE--SVSTLEII 67 (579)
Q Consensus 11 ~~p~~~~v~~G~~~~l~C~~~~~--~~~~v~W~~~g--~---~~---~-----------~~~~~~~~~~~--~~~~L~i~ 67 (579)
..|..+.+.+|++++|.|.+.+. ....+.|||.. . .+ . ...++...... ...+|+|.
T Consensus 28 ~q~~~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 107 (267)
T 3u1s_H 28 VQSGAEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELR 107 (267)
T ss_dssp EECCCEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEEC
T ss_pred EeeCCEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEEC
Confidence 34567889999999999999652 34589999832 1 11 0 12455554432 45789999
Q ss_pred CCCCCCCEEEEEEEEcC------Ce------------e-------eEEEEEEEEEecccCCCCCceecCCCceEEccCCc
Q psy16852 68 NPTKEDIGVYTCKATNI------GG------------V-------ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122 (579)
Q Consensus 68 ~~~~~d~G~Y~C~~~~~------~g------------~-------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~ 122 (579)
+++.+|+|.|+|.+.+. .+ . ....+.+.|... ...+|.+..........+|+.
T Consensus 108 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~--~~~~P~v~~~~~~~~~~~g~~ 185 (267)
T 3u1s_H 108 GLTADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSA--STKGPSVFPLAPSSKSTSGGT 185 (267)
T ss_dssp SCCGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCC--CCBCCEEEEECCCGGGEETTE
T ss_pred CCChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCC--CCCCCEEEEecCCcccCCCCc
Confidence 99999999999999621 01 0 111345566422 123444442122222347999
Q ss_pred EEEEEEEEee-c-CCeEEEEECCEEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEEE
Q psy16852 123 ATLKATVTGR-P-TPSICWYRGKEEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAECR 192 (579)
Q Consensus 123 ~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 192 (579)
++|.|.+.++ | ++.+.| ++..+.............++ .+.|.|.....+| +.|+|.+.|..+.....
T Consensus 186 ~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~ 258 (267)
T 3u1s_H 186 AALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD 258 (267)
T ss_dssp EEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEE
T ss_pred EEEEEEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCcceE
Confidence 9999999774 4 468999 44433221100000001111 2468888888888 99999999987654433
No 497
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.5e-13 Score=104.60 Aligned_cols=88 Identities=18% Similarity=0.356 Sum_probs=72.2
Q ss_pred CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS 485 (579)
Q Consensus 406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 485 (579)
.+|.+..++....+.+|+.++|.|.+.+ |.+.+.|++++..+..+.++.+.
T Consensus 7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~---------------------------- 57 (103)
T 2edf_A 7 GPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVV---------------------------- 57 (103)
T ss_dssp CCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEE----------------------------
T ss_pred CCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEE----------------------------
Confidence 4788888888899999999999999997 88899999999888766555443
Q ss_pred cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
.++..+.|.|.+++.+|+|.|+|.|.| ...++.|.|.
T Consensus 58 -------~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~~~l~V~ 94 (103)
T 2edf_A 58 -------CEGTMAMLVIRGASLKDAGEYTCEVEA----SKSTASLHVE 94 (103)
T ss_dssp -------EETTEEEEEESSCCTTTCSEEEEECSS----CEEEEEEEEC
T ss_pred -------ECCCEEEEEECCCCcccCEEEEEEEcc----CCcEEEEEEe
Confidence 244566799999999999999999999 3667777765
No 498
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=99.46 E-value=4.5e-13 Score=100.02 Aligned_cols=88 Identities=25% Similarity=0.395 Sum_probs=71.0
Q ss_pred CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS 485 (579)
Q Consensus 406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 485 (579)
..|.|...+....+.+|+.+.|.|.+ +.|.+.+.|++++..+..+.++.+..
T Consensus 7 ~~~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~--------------------------- 58 (95)
T 2k1m_A 7 PVSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLAT--------------------------- 58 (95)
T ss_dssp CCCCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEE---------------------------
T ss_pred CCCeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEE---------------------------
Confidence 35677777888899999999999999 78999999999999887666655432
Q ss_pred cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
++....|.|.+++.+|+|.|+|.| |....++.|.|.
T Consensus 59 --------~~~~~~L~I~~v~~~D~G~Y~C~a----g~~~~~~~l~V~ 94 (95)
T 2k1m_A 59 --------EGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKVI 94 (95)
T ss_dssp --------ETTEEEEEESSCCTTCCSEEEEEE----TTEEEEEEEEEE
T ss_pred --------cCCEEEEEEcCCCcccCEEEEEEE----CCceEEEEEEEe
Confidence 344556899999999999999999 666677777764
No 499
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Probab=99.46 E-value=3.7e-13 Score=104.41 Aligned_cols=94 Identities=19% Similarity=0.300 Sum_probs=73.1
Q ss_pred cCCCCccccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECCEEecCCCCEEEEEe-C-------CEEEEEEcCCCCC
Q psy16852 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDGTELHATEHYLITTV-E-------SVSTLEIINPTKE 72 (579)
Q Consensus 3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g~~~~~~~~~~~~~~-~-------~~~~L~i~~~~~~ 72 (579)
...+|.|...|.+..+.+|++++|.|.+.+.+ .+.+.|++++..+........... . ....|.|.+++.+
T Consensus 7 ~~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~ 86 (112)
T 3so5_A 7 DFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFT 86 (112)
T ss_dssp -CCSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGG
T ss_pred CCCCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccc
Confidence 45689999999999999999999999998653 579999999998865432111111 0 1478999999999
Q ss_pred CCEEEEEEEEcCCeee-EEEEEEEE
Q psy16852 73 DIGVYTCKATNIGGVA-TCSANLIV 96 (579)
Q Consensus 73 d~G~Y~C~~~~~~g~~-~~~~~~~v 96 (579)
|+|.|+|.|.|..|.. +..+.|.|
T Consensus 87 D~G~Y~C~a~n~~g~~~s~~~~l~V 111 (112)
T 3so5_A 87 SEGXYQCVISNHFGSSYSVXAXLTI 111 (112)
T ss_dssp GCEEEEEEEEETTEEEECCCEEEEE
T ss_pred cCCeEEEEEEeCCCcEEEeEEEEEe
Confidence 9999999999999873 45666665
No 500
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=1.1e-13 Score=105.96 Aligned_cols=91 Identities=20% Similarity=0.331 Sum_probs=73.3
Q ss_pred CCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852 405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 484 (579)
Q Consensus 405 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~ 484 (579)
..+|.+..++....+.+|+.+.|.|.+.+.|.+ +.|++++..+..+.++.+..
T Consensus 6 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~-------------------------- 58 (106)
T 2dlt_A 6 SGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISH-------------------------- 58 (106)
T ss_dssp CCCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEE--------------------------
T ss_pred CCCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEE--------------------------
Confidence 357888888889999999999999999988887 99999999887766655432
Q ss_pred ecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852 485 SSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533 (579)
Q Consensus 485 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 533 (579)
++....|.|.++..+|+|.|+|.|.|. ....++.|.|.
T Consensus 59 ---------~~~~~~L~I~~v~~~D~G~Y~C~a~n~--~~~~~~~l~V~ 96 (106)
T 2dlt_A 59 ---------VGRFHKLVIDDVRPEDEGDYTFVPDGY--ALSLSAKLNFL 96 (106)
T ss_dssp ---------ETTEEEEEESSCCTTTCSCEEEEEETS--CCCCCBCEEEE
T ss_pred ---------eCCEEEEEECCCCcCCCEEEEEEEccC--CceEEEEEEEE
Confidence 344566999999999999999999998 44455566654
Done!