RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16852
(579 letters)
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 380 bits (978), Expect = e-126
Identities = 121/574 (21%), Positives = 206/574 (35%), Gaps = 72/574 (12%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
P FIE ++ V + +P CKV+G P + W K+ T+L + Y + +V++L
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATL 125
I D+G YTCKA N G SA L++ +E P F + LK V P
Sbjct: 65 INKVDHSDVGEYTCKAENSVGAVASSAVLVI---KERKLPPSFARKLKDVHETLGFPVAF 121
Query: 126 KATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNT 185
+ + G + WY+ E + D F L I + Y+ A N
Sbjct: 122 ECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVA--TLQILQTDQSHVGQYNCSASNP 179
Query: 186 FGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKW 245
G A A L L + P ++ + + T + TGT ++ W
Sbjct: 180 LGTASSSAKLTLSEHEV--------PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITW 231
Query: 246 FKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
K+ +EI + +N L + + TK G+Y N AG+ S + +
Sbjct: 232 AKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP 291
Query: 303 AETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDG 362
++ ++ + G P V W D T ++E + + +
Sbjct: 292 RFIKKLEPSRIVKQDEHTRY-----ECKIGGSPEIKVLWYKDETEIQESSKFRMSFV-ES 345
Query: 363 LCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQ 422
+ L + + E++G Y+C A N G A ++ +L V+ E P F K PV
Sbjct: 346 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK------EPPVFRKKPHPVETLKG 399
Query: 423 SPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 482
+ L+ + G P + W++ K E+ + + + I D Y
Sbjct: 400 ADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSE--NFLTSIHILNVDSADIGEY-- 455
Query: 483 KASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVM 542
C+A N GS TC +++ +
Sbjct: 456 -------------------------------QCKASNDVGSDTCVGSIT---------LK 475
Query: 543 ESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEI 576
PRF+K + G+ V A + +E + +
Sbjct: 476 APPRFVKKLSDISTVVGEEVQLQATIEGAEPISV 509
Score = 350 bits (899), Expect = e-114
Identities = 126/535 (23%), Positives = 201/535 (37%), Gaps = 69/535 (12%)
Query: 2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESV 61
L P F K++ V P F C++ G ++W KDG L + + + +V
Sbjct: 97 ERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNV 156
Query: 62 STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQS 121
+TL+I+ + +G Y C A+N G A+ SA L + E E P F V
Sbjct: 157 ATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHE---VPPFFDLKPVSVDLALGE 213
Query: 122 PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
T K VTG I W + EI P + M T L++ + T D Y+
Sbjct: 214 SGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA--TLTVLKVTKGDAGQYTCY 271
Query: 182 AVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ-ALLVPKDSTVTLEAEYTGTPT 240
A N G+ C A L V E P ++ L+ + +V +D E + G+P
Sbjct: 272 ASNVAGKDSCSAQL-----------GVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPE 320
Query: 241 PEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVT 297
+V W+K+ EI + ++V L + + + +G Y N AG A +S S+
Sbjct: 321 IKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLK 380
Query: 298 ITVAEA-ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTI 356
+ V + G P V+W D ++ GK+ I
Sbjct: 381 VKEPPVFRKKPHPVETLKGADVHL-------ECELQGTPPFQVSWHKDKRELRSGKKYKI 433
Query: 357 YQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKP 416
+ + L + I V + G Y C A N VG ++ ++ P+F K L
Sbjct: 434 MSE-NFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK------APPRFVKKLSD 486
Query: 417 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 476
+ L+AT+ G S+ W++ K EI+ ++ +
Sbjct: 487 ISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDN---------------------- 524
Query: 477 EAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
I N + L S+ G TC+ +N AG+ C ATLS
Sbjct: 525 ------------IWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLS 567
Score = 293 bits (752), Expect = 3e-92
Identities = 105/400 (26%), Positives = 161/400 (40%), Gaps = 31/400 (7%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
P F K V + F C V G +TW KD E+ +Y +T VE+ +TL
Sbjct: 197 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 256
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPV-IAEAQSPAT 124
++ TK D G YTC A+N+ G +CSA L V E P+F K L+P I +
Sbjct: 257 VLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE------PPRFIKKLEPSRIVKQDEHTR 310
Query: 125 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
+ + G P + WY+ + EI + M F VL + + +D Y+ +A N
Sbjct: 311 YECKIGGSPEIKVLWYKDETEIQESSKFRMSF--VESVAVLEMYNLSVEDSGDYTCEAHN 368
Query: 185 TFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVK 244
G A +L +V E P + + K + V LE E GTP +V
Sbjct: 369 AAGSASSSTSL-----------KVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVS 417
Query: 245 WFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA 301
W K+ +E+ S I +++ +T + I G+Y+ + N+ G GS+T+
Sbjct: 418 WHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAP 477
Query: 302 -EAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDT 360
+ D+ Q + G V W D + + +
Sbjct: 478 PRFVKKLSDISTVVGEEVQLQ-------ATIEGAEPISVAWFKDKGEIVRESDNIWISYS 530
Query: 361 DGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400
+ + L S P NAG Y+C N G ATL+V E
Sbjct: 531 ENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE 570
Score = 282 bits (724), Expect = 3e-88
Identities = 109/473 (23%), Positives = 177/473 (37%), Gaps = 76/473 (16%)
Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
E P F +PL+ V A P TL+ V G P I WY+ ++ + M+F
Sbjct: 4 EPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVA-- 61
Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLV 223
L I++ D Y+ KA N+ G A LV+++ P+ R L+ +
Sbjct: 62 SLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKER--------KLPPSFARKLKDVHE 113
Query: 224 PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYE 280
V E G+ +V W+K+G+ + NV L I QT + G+Y
Sbjct: 114 TLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYN 173
Query: 281 IRVVNEAGEARTSGSVTITVAEA----ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPT 336
N G A +S +T++ E + + V + + +F+ VTG
Sbjct: 174 CSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFK-------CHVTGTAP 226
Query: 337 PLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATL 396
+TW+ D ++ G + + L + +V +AG Y+C A N G+ +A L
Sbjct: 227 IKITWAKDNREIRPGGNYKMTLVENT-ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL 285
Query: 397 AVEEKEESGEAPKFTKPLKPV-IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHT 455
V+ E P+F K L+P I + + + G P + WY+ + EI +
Sbjct: 286 GVQ------EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFR 339
Query: 456 MEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTC 515
M F VL + + +D Y TC
Sbjct: 340 MSF--VESVAVLEMYNLSVEDSGDY---------------------------------TC 364
Query: 516 RAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
A N AGS + + +L V E P F K P + + G V ++
Sbjct: 365 EAHNAAGSASSSTSL---------KVKEPPVFRKKPHPVETLKGADVHLECEL 408
Score = 214 bits (547), Expect = 2e-62
Identities = 85/368 (23%), Positives = 134/368 (36%), Gaps = 63/368 (17%)
Query: 209 LEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTK 265
+E P + PL+ + +TL+ + GTP + W+K ++ S ++ K+NV
Sbjct: 3 MEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVAS 62
Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA----ETVMMDVRVESHPTASFQ 321
LVI + G+Y + N G +S + I + + DV +F+
Sbjct: 63 LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFE 122
Query: 322 WFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSC 381
+ G V+W DG +K+ + + L I + + G Y+C
Sbjct: 123 -------CRINGSEPLQVSWYKDGELLKDDANLQTSFIHNV-ATLQILQTDQSHVGQYNC 174
Query: 382 TAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICW 441
+A NP+G A ++A L + E E P F V T K VTG I W
Sbjct: 175 SASNPLGTASSSAKLTLSEHE---VPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITW 231
Query: 442 YRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL 501
+ EI P + M T L++ + T D Y
Sbjct: 232 AKDNREIRPGGNYKMTLVENTA--TLTVLKVTKGDAGQY--------------------- 268
Query: 502 ISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPE-TAKVMDGQ 560
TC A NVAG +C+A L V E PRFIK E + V +
Sbjct: 269 ------------TCYASNVAGKDSCSAQLG---------VQEPPRFIKKLEPSRIVKQDE 307
Query: 561 SVLFTAQV 568
+ ++
Sbjct: 308 HTRYECKI 315
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 309 bits (794), Expect = 5e-96
Identities = 109/589 (18%), Positives = 172/589 (29%), Gaps = 102/589 (17%)
Query: 4 VLAPRFIE--KIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITT--VE 59
P+ + K C +G+P+P W K + ++ +
Sbjct: 244 SAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQ 303
Query: 60 SVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEA 119
TL I + ED G Y C N G + L V +
Sbjct: 304 VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA------PLSAKIDPPTQTVDF 357
Query: 120 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYS 179
PA TG P ++ W + + I VL I +D+ +Y
Sbjct: 358 GRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES------------VLRIESVKKEDKGMYQ 405
Query: 180 VKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTP 239
N AE A L L + P I + Q + +V L+ G P
Sbjct: 406 CFVRNDRESAEASAELKLG--------GRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNP 457
Query: 240 TPEVKWFKNGKEIVSKD--------IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEAR 291
TPE+ W +GK+I + D D V+ L I G Y+ ++ G A
Sbjct: 458 TPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAE 517
Query: 292 TSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEG 351
S + + M + + T V G P + W D +
Sbjct: 518 HSAKLNVYGLPYIRQMEKKAIVAGETLIVT-------CPVAGYPIDSIVWERDNRALPIN 570
Query: 352 KEVTIYQDTDGLCKLAISEV-FPENAGLYSCTAVNPVGEAV-AAATLAVEEKEESGEAPK 409
++ ++ + L I V + Y+C A N G + + + V P+
Sbjct: 571 RKQKVFPNGT----LIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVL------PR 620
Query: 410 F-TKPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVL 467
+ A+ TL +V G P +I W + I D G T G VL
Sbjct: 621 IIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRG-SVL 679
Query: 468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCT 527
+I + TC A N+AG T
Sbjct: 680 TIEAVEASHAGNF---------------------------------TCHARNLAGHQQFT 706
Query: 528 ATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEI 576
L +V PR+I P G + + ++
Sbjct: 707 TPL---------NVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQV 746
Score = 303 bits (776), Expect = 2e-93
Identities = 103/536 (19%), Positives = 175/536 (32%), Gaps = 84/536 (15%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
+PA+FTC+ G+P+ T++W KDG + +E L
Sbjct: 343 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES----------VLR 392
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATL 125
I + KED G+Y C N A SA L + + + P + + E L
Sbjct: 393 IESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFD---PPVIRQAFQEETMEPGPSVFL 449
Query: 126 KATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT---TGECVLSISEATPQDEAVYSVKA 182
K G PTP I W ++I ++ + + T L+I+ D +Y A
Sbjct: 450 KCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIA 509
Query: 183 VNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPE 242
+ G AE A L V P I R ++ + T+ + G P
Sbjct: 510 KSKVGVAEHSAKLN-----------VYGLPYI-RQMEKKAIVAGETLIVTCPVAGYPIDS 557
Query: 243 VKWFKNGKEI-VSKDIETKDNVTKLVIKQTTKKT-TGKYEIRVVNEAGEARTSGSVTITV 300
+ W ++ + + +++ + N T L+I+ + + Y N+ G + GS+ + V
Sbjct: 558 IVWERDNRALPINRKQKVFPNGT-LIIENVERNSDQATYTCVAKNQEGYS-ARGSLEVQV 615
Query: 301 AEAETV----MMDVRVESHPTASFQWFIHSEPVVVTGKPTPL-VTWSHDGTPMKEGKEVT 355
+ + + + V G PL + W+ DG + E +T
Sbjct: 616 MVLPRIIPFAFEEGPAQVGQYLTLHC-------SVPGGDLPLNIDWTLDGQAISEDLGIT 668
Query: 356 IYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLK 415
+ L I V +AG ++C A N G L V P++
Sbjct: 669 TSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY------VPPRWILEPT 722
Query: 416 PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEF-NPTTGECVLSISEATP 474
S A ++ G P P + W + + + + N E L +
Sbjct: 723 DKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQK 782
Query: 475 QDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATL 530
+E Y C A N GS +
Sbjct: 783 TNEGYY---------------------------------LCEAINGIGSGLSAVIM 805
Score = 296 bits (760), Expect = 5e-91
Identities = 115/587 (19%), Positives = 171/587 (29%), Gaps = 101/587 (17%)
Query: 4 VLAPRFIEKIQPVVSHQEQPALFTCKVE---GHPLPTMTWQKDGTELHATEHYLIT--TV 58
V+A + + + A+ C + + ++W D E + V
Sbjct: 136 VVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV 195
Query: 59 ESVSTLEIINPTKED-IGVYTCKATNIGGVATC---SANLIVLEKEESGEAPKFTKPLKP 114
L I ED Y C+ + T + +V+ + S PK K
Sbjct: 196 LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKF 255
Query: 115 --VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATP 172
S L G P P WY+ E + L I +A
Sbjct: 256 DMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVV 315
Query: 173 QDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLE 232
+D Y N+ G L V + V
Sbjct: 316 EDSGKYLCVVNNSVGGESVETVLT-----------VTAPLSAKIDPPTQTVDFGRPAVFT 364
Query: 233 AEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART 292
+YTG P V W K+GK I + + L I+ K+ G Y+ V N+ A
Sbjct: 365 CQYTGNPIKTVSWMKDGKAIGHSE-------SVLRIESVKKEDKGMYQCFVRNDRESAEA 417
Query: 293 SGSVTITVAEA----ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPM 348
S + + + +E P+ + V G PTP ++W DG +
Sbjct: 418 SAELKLGGRFDPPVIRQAFQEETMEPGPSVFLK-------CVAGGNPTPEISWELDGKKI 470
Query: 349 KEGKEVTIYQDT----DGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEES 404
+ Q D + L I+ V + GLY C A + VG A +A L V
Sbjct: 471 ANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGL--- 527
Query: 405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 464
P + K I + + V G P SI W R + + + N T
Sbjct: 528 ---PYIRQMEKKAIVAGE-TLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGT--- 580
Query: 465 CVLSISEAT-PQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAG- 522
L I D+A Y TC A+N G
Sbjct: 581 --LIIENVERNSDQATY---------------------------------TCVAKNQEGY 605
Query: 523 SVTCTATLSLLPESEVTDVMESPRFIK-TPETAKVMDGQSVLFTAQV 568
S + + VM PR I E GQ + V
Sbjct: 606 SARGSLEVQ---------VMVLPRIIPFAFEEGPAQVGQYLTLHCSV 643
Score = 286 bits (733), Expect = 4e-87
Identities = 108/595 (18%), Positives = 181/595 (30%), Gaps = 90/595 (15%)
Query: 2 AEVLAPRFIEKIQPVVSHQE-QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES 60
A+ P F+++ + A CK G+P+P + W + + + + S
Sbjct: 34 ADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTA-VGDVPGLRQISS 92
Query: 61 VSTLEIINPTKEDI------GVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKP 114
L ED VY C A N G + + A + +
Sbjct: 93 DGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVR-----AVVAQYYEADVNK 147
Query: 115 VIAEAQSPATLKATV---TGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEAT 171
+ A +K + + W+ +EE L I E
Sbjct: 148 EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVG 207
Query: 172 PQD-EAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVT 230
P+D Y + + + R T + + ST+
Sbjct: 208 PEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMA 267
Query: 231 LEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK-----LVIKQTTKKTTGKYEIRVVN 285
L G P P +W+K + K ++ K L+IK + +GKY V N
Sbjct: 268 LLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNN 327
Query: 286 EAGEARTSGSVTITVA-EAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHD 344
G +T+T A+ V+ A F TG P V+W D
Sbjct: 328 SVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVF-------TCQYTGNPIKTVSWMKD 380
Query: 345 GTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEES 404
G + + V L I V E+ G+Y C N A A+A L + +
Sbjct: 381 GKAIGHSESV-----------LRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRF-- 427
Query: 405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT--- 461
+ P + + E LK G PTP I W ++I ++ + + T
Sbjct: 428 -DPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNG 486
Query: 462 TGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVA 521
L+I+ D +Y C A++
Sbjct: 487 DVVSYLNITSVHANDGGLY---------------------------------KCIAKSKV 513
Query: 522 GSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEI 576
G +A L +V P +I+ E ++ G++++ T V I
Sbjct: 514 GVAEHSAKL---------NVYGLP-YIRQMEKKAIVAGETLIVTCPVAGYPIDSI 558
Score = 249 bits (637), Expect = 2e-73
Identities = 83/528 (15%), Positives = 145/528 (27%), Gaps = 98/528 (18%)
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTK-PLKPVIAEAQSP 122
+ + N + + ++ A G T +AN ++ + P F K P + +
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQ----KGPVFLKEPTNRIDFSNSTG 56
Query: 123 ATLKATVTGRPTPSICWYR-GKEEILPDNGHTMEFNPTTGECVLSISEATPQD------E 175
A ++ +G P P I W R + G + L +D
Sbjct: 57 AEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK----LVFPPFRAEDYRQEVHA 112
Query: 176 AVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAE- 234
VY+ A N FG R V R + A + V + ++ ++
Sbjct: 113 QVYACLARNQFGSIISRDVHV----------RAVVAQYYEADVNKEHVIRGNSAVIKCLI 162
Query: 235 --YTGTPTPEVKWFKNGKEIVSKDIETKDNVT-----KLVIKQTTKK-TTGKYEIRVVNE 286
+ V W + +E E +L I++ + Y+ R +
Sbjct: 163 PSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHR 222
Query: 287 AG-EARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPV----VVTGKPTPLVTW 341
E R S + V +V S + + S + G P P+ W
Sbjct: 223 LTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRW 282
Query: 342 SHDGTPMKEGKEVTIYQDTDGL-CKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400
+ V + + L I + E++G Y C N VG L V
Sbjct: 283 YKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT- 341
Query: 401 KEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP 460
+ PA TG P ++ W + + I
Sbjct: 342 -----APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES------- 389
Query: 461 TTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENV 520
VL I +D+ +Y C N
Sbjct: 390 -----VLRIESVKKEDKGMY---------------------------------QCFVRND 411
Query: 521 AGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
S +A L ++ + P + + + G SV
Sbjct: 412 RESAEASAEL------KLGGRFDPPVIRQAFQEETMEPGPSVFLKCVA 453
Score = 236 bits (604), Expect = 1e-68
Identities = 83/410 (20%), Positives = 131/410 (31%), Gaps = 44/410 (10%)
Query: 2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTV--- 58
P + Q C G+P P ++W+ DG ++ + Y +
Sbjct: 425 GRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTV 484
Query: 59 --ESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVI 116
+ VS L I + D G+Y C A + GVA SA L V P + K I
Sbjct: 485 NGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGL------PYIRQMEKKAI 538
Query: 117 AEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEAT-PQDE 175
+ + V G P SI W R + + + N T L I D+
Sbjct: 539 VAGE-TLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGT-----LIIENVERNSDQ 592
Query: 176 AVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIV-RPLQALLVPKDSTVTLEAE 234
A Y+ A N G + R +L + +V+ P I+ + +TL
Sbjct: 593 ATYTCVAKNQEGYSA-RGSLEV---------QVMVLPRIIPFAFEEGPAQVGQYLTLHCS 642
Query: 235 YTGTPTP-EVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGE 289
G P + W +G+ I + L I+ G + N AG
Sbjct: 643 VPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGH 702
Query: 290 ARTSGSVTITVA-EAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPM 348
+ + + + V D A G P P VTW
Sbjct: 703 QQFTTPLNVYVPPRWILEPTDKAFAQGSDAKV-------ECKADGFPKPQVTWKKAVGDT 755
Query: 349 KEGKEVTIYQDTDGL--CKLAISEVFPENAGLYSCTAVNPVGEAVAAATL 396
+ D + L + + N G Y C A+N +G ++A +
Sbjct: 756 PGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIM 805
Score = 188 bits (478), Expect = 2e-51
Identities = 67/308 (21%), Positives = 108/308 (35%), Gaps = 32/308 (10%)
Query: 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
V +I +++ + + TC V G+P+ ++ W++D L +
Sbjct: 523 NVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVF---PNG 579
Query: 63 TLEIINPTK-EDIGVYTCKATN-IGGVATCSANLIVLEKEESGEAPKF-TKPLKPVIAEA 119
TL I N + D YTC A N G A S + V+ P+ + A+
Sbjct: 580 TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVL------PRIIPFAFEEGPAQV 633
Query: 120 QSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVY 178
TL +V G P +I W + I D G T G VL+I +
Sbjct: 634 GQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRG-SVLTIEAVEASHAGNF 692
Query: 179 SVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT 238
+ A N G + L V P + + S +E + G
Sbjct: 693 TCHARNLAGHQQFTTPLN-----------VYVPPRWILEPTDKAFAQGSDAKVECKADGF 741
Query: 239 PTPEVKWFKNGKEIVS--KDIETKDNVTK----LVIKQTTKKTTGKYEIRVVNEAGEART 292
P P+V W K + KD++ DN+ L + K G Y +N G +
Sbjct: 742 PKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLS 801
Query: 293 SGSVTITV 300
+ + I+V
Sbjct: 802 A-VIMISV 808
Score = 81.9 bits (202), Expect = 2e-16
Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 3/100 (3%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITT---VESVS 62
PR+I + Q A CK +G P P +TW+K + L +
Sbjct: 714 PPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEG 773
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEES 102
TL + N K + G Y C+A N G + +I ++
Sbjct: 774 TLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHHH 813
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 267 bits (683), Expect = 3e-80
Identities = 86/608 (14%), Positives = 170/608 (27%), Gaps = 86/608 (14%)
Query: 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVST 63
+ + + + ++ + + C L + + + I+ +S
Sbjct: 126 IASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRIS-WDSKKG 184
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPA 123
I + G+ C+A ++V+ P +
Sbjct: 185 FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRI--YDVVLSPSHGIELSVGEKL 242
Query: 124 TLKATVTGRPTPSICWY--------RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDE 175
L T I + + K+ + D L+I T D+
Sbjct: 243 VLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQ 302
Query: 176 AVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIV---RPLQALLVPKDSTVTLE 232
+Y+ A + + + RV E P + + V +
Sbjct: 303 GLYTCAASSGLMTKKNSTFV-----------RVHEKPFVAFGSGMESLVEATVGERVRIP 351
Query: 233 AEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART 292
A+Y G P PE+KW+KNG + S +V L I + +++ TG Y + + N + +
Sbjct: 352 AKYLGYPPPEIKWYKNGIPLESNHTIKAGHV--LTIMEVSERDTGNYTVILTNPISKEKQ 409
Query: 293 SGSVTITVAEA------------------ETVMMDVRVESHPT-ASFQWFIHSEPVV--- 330
S V++ V T + V + P W+ E
Sbjct: 410 SHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANE 469
Query: 331 ----------VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYS 380
+ V G ++ K + + + LY
Sbjct: 470 PSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYK 529
Query: 381 CTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSIC 440
C AVN VG + V P+ T E Q +L T ++
Sbjct: 530 CEAVNKVGRGERVISFHVTRG------PEITLQPDMQPTE-QESVSLWCTADRSTFENLT 582
Query: 441 WYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL 500
WY+ + LP + + TP + + ++ + + + ++
Sbjct: 583 WYKLGPQPLPIHVGELP---------------TPVCKNLDTLWKLNATMFSNSTNDILIM 627
Query: 501 LISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQ 560
+ + GD C A++ L +P E G+
Sbjct: 628 ELKNASLQDQGDYVCLAQDRKTKKRHCVVRQL-----TVLERVAPTITGNLENQTTSIGE 682
Query: 561 SVLFTAQV 568
S+ +
Sbjct: 683 SIEVSCTA 690
Score = 258 bits (659), Expect = 6e-77
Identities = 77/588 (13%), Positives = 151/588 (25%), Gaps = 62/588 (10%)
Query: 2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES- 60
+ PR + + TC+ + + W + + + +T
Sbjct: 27 VSLDLPRLSIQKDILTIKANTTLQITCRGQ----RDLDWLWPNNQSGSEQRVEVTECSDG 82
Query: 61 --VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAE 118
TL I D G Y C + + + + +
Sbjct: 83 LFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFI-ASVSDQHGVVYITEN 141
Query: 119 AQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVY 178
+ + R E+ +G+ + ++ G +I +
Sbjct: 142 KNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKG---FTIPSYMISYAGMV 198
Query: 179 SVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT 238
+A + +V+ I ++ P + + + L
Sbjct: 199 FCEAKINDESYQSIMYIVVVVGYRI-------YDVVLSPSHGIELSVGEKLVLNCTARTE 251
Query: 239 PTPEV--KWFKNGKEIVSKDIETKDNVTK-----------LVIKQTTKKTTGKYEIRVVN 285
+ W + K + +D T+ L I T+ G Y +
Sbjct: 252 LNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASS 311
Query: 286 EAGEARTSGSVTI----TVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTW 341
+ S V + VA + V G P P + W
Sbjct: 312 GLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIP-------AKYLGYPPPEIKW 364
Query: 342 SHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEK 401
+G P++ + L I EV + G Y+ NP+ + + +++
Sbjct: 365 YKNGIPLESNHTIKAGH------VLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVY 418
Query: 402 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNP 460
K + TL TV P P I WY EE +
Sbjct: 419 VPPQIGEKSLISPVDSYQYGTT-QTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVT 477
Query: 461 TTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENV 520
C S Q ++ + + ++ N++V + + C A N
Sbjct: 478 NPYPCEEWRSVEDFQGG--NKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNK 535
Query: 521 AGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
G + V P P+ + + +SV
Sbjct: 536 VGRGERVISFH---------VTRGPEITLQPDM-QPTEQESVSLWCTA 573
Score = 254 bits (650), Expect = 1e-75
Identities = 89/608 (14%), Positives = 168/608 (27%), Gaps = 123/608 (20%)
Query: 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLI--------- 55
+ + + + + C + + + L+
Sbjct: 223 IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 282
Query: 56 -TTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKP 114
+ +STL I T+ D G+YTC A++ S + V EK +
Sbjct: 283 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK---PFVAFGSGMESL 339
Query: 115 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 174
V A + A G P P I WY+ + ++ HT++ L+I E + +D
Sbjct: 340 VEATVGERVRIPAKYLGYPPPEIKWYKNGIPL--ESNHTIKAGHV-----LTIMEVSERD 392
Query: 175 EAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAE 234
Y+V N + + + L P++ E I +T TL
Sbjct: 393 TGNYTVILTNPISKEKQSHVVSL---VVYVPPQIGEKSLISPVDS---YQYGTTQTLTCT 446
Query: 235 YTGTPTPE-VKWFKNGKEIVSKD------------------------------------I 257
P P + W+ +E + + +
Sbjct: 447 VYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFAL 506
Query: 258 ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI------------TVAEAET 305
N T + + Y+ VN+ G S + E E+
Sbjct: 507 IEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQES 566
Query: 306 VMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCK 365
V + + + W+ + + + + T+ +
Sbjct: 567 VSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILI 626
Query: 366 LAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPA 425
+ + ++ G Y C A + + + E AP T L+
Sbjct: 627 MELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLER--VAPTITGNLENQTTSIGESI 684
Query: 426 TLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS 485
+ T +G P P I W++ E ++ D+G + G L+I +DE +Y
Sbjct: 685 EVSCTASGNPPPQIMWFKDNETLVEDSGIVL----KDGNRNLTIRRVRKEDEGLY----- 735
Query: 486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESP 545
TC+A +V G A + +
Sbjct: 736 ----------------------------TCQACSVLGCAKVEAFFI---------IEGAQ 758
Query: 546 RFIKTPET 553
T
Sbjct: 759 EKTNLERT 766
Score = 206 bits (526), Expect = 4e-58
Identities = 64/515 (12%), Positives = 135/515 (26%), Gaps = 94/515 (18%)
Query: 73 DIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR 132
+ ++ C T V S +L + P+ + + +A + + T G+
Sbjct: 8 AVALWLCVETRAASVGLPSVSL---------DLPRLSIQKDILTIKANTTLQI--TCRGQ 56
Query: 133 PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECR 192
W + E + L+I + D Y T +
Sbjct: 57 RDLDWLWP-NNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIY 115
Query: 193 ANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEI 252
+ P + + + + + K+ TV + + + + ++
Sbjct: 116 VYV-----QDYRSPFI-ASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKR 169
Query: 253 VSKDIE--TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMM-- 308
D + D+ I G ++ + + V ++
Sbjct: 170 FVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLS 229
Query: 309 ---DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQD------ 359
+ + + + ++ + K + + +D
Sbjct: 230 PSHGIELSVGEKLVLN-------CTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 282
Query: 360 ---TDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKP 416
L L I V + GLY+C A + + + + V EK +
Sbjct: 283 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK---PFVAFGSGMESL 339
Query: 417 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 476
V A + A G P P I WY+ + ++ HT++ L+I E + +D
Sbjct: 340 VEATVGERVRIPAKYLGYPPPEIKWYKNGIPL--ESNHTIKAGHV-----LTIMEVSERD 392
Query: 477 EAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPES 536
Y T N + +SL
Sbjct: 393 TGNY---------------------------------TVILTNPISKEKQSHVVSL---- 415
Query: 537 EVTDVMESPRFIKTPETAK---VMDGQSVLFTAQV 568
V P+ + + G + T V
Sbjct: 416 ---VVYVPPQIGEKSLISPVDSYQYGTTQTLTCTV 447
Score = 205 bits (522), Expect = 1e-57
Identities = 85/474 (17%), Positives = 147/474 (31%), Gaps = 96/474 (20%)
Query: 3 EVLAPRFIEKIQPVVSHQE----QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTV 58
V F+ + S E + K G+P P + W K+G L + T+
Sbjct: 323 RVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNH-----TI 377
Query: 59 ESVSTLEIINPTKEDIGVYTCKATNIGGVATCS--ANLIVLEKEESGEAPKFTKPLKPVI 116
++ L I+ ++ D G YT TN S +L+V + GE P+
Sbjct: 378 KAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKS-LISPVDSYQ 436
Query: 117 AEAQSPATLKATVTGRPTP-SICWYRGKEEILPD-------------------------- 149
+ TL TV P P I WY EE +
Sbjct: 437 YG--TTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGG 494
Query: 150 -----NGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTID 204
N + + V ++ A+Y +AVN GR E +
Sbjct: 495 NKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISF--------- 545
Query: 205 KPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDI------- 257
V P I + + +V+L + + W+K G + + +
Sbjct: 546 --HVTRGPEITLQPD-MQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPV 602
Query: 258 ----------------ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA 301
+ +++ + +K + + G Y + + R +TV
Sbjct: 603 CKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVL 662
Query: 302 EAE-----TVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTI 356
E + + + +G P P + W D + E + +
Sbjct: 663 ERVAPTITGNLENQTTSIGESIEVS-------CTASGNPPPQIMWFKDNETLVEDSGIVL 715
Query: 357 YQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKF 410
DG L I V E+ GLY+C A + +G A A +E +E +
Sbjct: 716 ---KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLERT 766
Score = 171 bits (435), Expect = 8e-46
Identities = 67/365 (18%), Positives = 113/365 (30%), Gaps = 70/365 (19%)
Query: 7 PRFIEK--IQPVVSHQE-QPALFTCKVEGHPLP-TMTWQKDGTEL--------------- 47
P+ EK I PV S+Q TC V P P + W E
Sbjct: 421 PQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPY 480
Query: 48 ------------------HATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVAT 89
+ + ++ + ++ +Y C+A N G
Sbjct: 481 PCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGE 540
Query: 90 CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPD 149
+ V P+ T E Q +L T ++ WY+ + LP
Sbjct: 541 RVISFHVTRG------PEITLQPDMQPTE-QESVSLWCTADRSTFENLTWYKLGPQPLPI 593
Query: 150 NG------------------HTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAEC 191
+ TM N T ++ + A+ QD+ Y A + +
Sbjct: 594 HVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRH 653
Query: 192 RANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKE 251
L APTI L+ ++ + +G P P++ WFK+ +
Sbjct: 654 CVVRQLTV-------LERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNET 706
Query: 252 IV-SKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDV 310
+V I KD L I++ K+ G Y + + G A+ I A+ +T +
Sbjct: 707 LVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLERT 766
Query: 311 RVESH 315
H
Sbjct: 767 HHHHH 771
Score = 143 bits (361), Expect = 3e-36
Identities = 46/425 (10%), Positives = 93/425 (21%), Gaps = 94/425 (22%)
Query: 167 ISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKD 226
+ A++ + L+ P + L + +
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVS--------------LDLPRLSIQKDILTIKAN 46
Query: 227 STVTLEAEYTGTPTPEVKWFKNGKEIVSK----DIETKDNVTKLVIKQTTKKTTGKYEIR 282
+T+ + G + W N + + L I + TG Y+
Sbjct: 47 TTLQITCR--GQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCF 104
Query: 283 VVNEAGEARTSGSVT------ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPT 336
+ V I + ++ + + T P + +
Sbjct: 105 YRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVI-------PCLGSISNL 157
Query: 337 P--LVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAA 394
L + + +G ++ D I AG+ C A +
Sbjct: 158 NVSLCARYPEKRFVPDGNRISW----DSKKGFTIPSYMISYAGMVFCEAKINDESYQSIM 213
Query: 395 TLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWY--------RGKE 446
+ V P + L T I + + K+
Sbjct: 214 YIVVVVGYRI--YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKK 271
Query: 447 EILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKIT 506
+ D L+I T D+ +Y
Sbjct: 272 LVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLY-------------------------- 305
Query: 507 RDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPR---FIKTPETAKVMDGQSVL 563
TC A + + + + V E P + G+ V
Sbjct: 306 -------TCAASSGLMTKKNSTFV---------RVHEKPFVAFGSGMESLVEATVGERVR 349
Query: 564 FTAQV 568
A+
Sbjct: 350 IPAKY 354
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 245 bits (627), Expect = 3e-77
Identities = 84/297 (28%), Positives = 129/297 (43%), Gaps = 23/297 (7%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
P F K V + F C V G +TW KD E+ +Y +T VE+ +TL
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 64
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ-SPAT 124
++ TK D G YTC A+N+ G +CSA L V E P+F K L+P Q
Sbjct: 65 VLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP------PRFIKKLEPSRIVKQDEHTR 118
Query: 125 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
+ + G P + WY+ + EI + M F VL + + +D Y+ +A N
Sbjct: 119 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVE--SVAVLEMYNLSVEDSGDYTCEAHN 176
Query: 185 TFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVK 244
G A +L +V E P + + K + V LE E GTP +V
Sbjct: 177 AAGSASSSTSL-----------KVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVS 225
Query: 245 WFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
W K+ +E+ S I +++ +T + I G+Y+ + N+ G GS+T+
Sbjct: 226 WHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
Score = 214 bits (548), Expect = 1e-65
Identities = 61/328 (18%), Positives = 110/328 (33%), Gaps = 54/328 (16%)
Query: 209 LEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTK 265
+ P ++ + + T + TGT ++ W K+ +EI + +N
Sbjct: 3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA-EAETVMMDVR-VESHPTASFQWF 323
L + + TK G+Y N AG+ S + + + R V+ +
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRY--- 119
Query: 324 IHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTA 383
+ G P V W D T ++E + + L + + E++G Y+C A
Sbjct: 120 ----ECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESV-AVLEMYNLSVEDSGDYTCEA 174
Query: 384 VNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYR 443
N G A ++ +L V+ E P F K PV + L+ + G P + W++
Sbjct: 175 HNAAGSASSSTSLKVK------EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHK 228
Query: 444 GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS 503
K E+ + + + I D Y
Sbjct: 229 DKRELRSGKKYKIMSE--NFLTSIHILNVDSADIGEY----------------------- 263
Query: 504 KITRDQIGDVTCRAENVAGSVTCTATLS 531
C+A N GS TC +++
Sbjct: 264 ----------QCKASNDVGSYTCVGSIT 281
Score = 211 bits (538), Expect = 3e-64
Identities = 68/301 (22%), Positives = 109/301 (36%), Gaps = 26/301 (8%)
Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
P F V T K VTG I W + EI P + M T
Sbjct: 4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA-- 61
Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQAL-L 222
L++ + T D Y+ A N G+ C A L V E P ++ L+ +
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL-----------GVQEPPRFIKKLEPSRI 110
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKY 279
V +D E + G+P +V W+K+ EI + ++V L + + + +G Y
Sbjct: 111 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 170
Query: 280 EIRVVNEAGEARTSGSVTITVA-EAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPL 338
N AG A +S S+ + V + + G P
Sbjct: 171 TCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLE-------CELQGTPPFQ 223
Query: 339 VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398
V+W D ++ GK+ I + + L + I V + G Y C A N VG ++ +
Sbjct: 224 VSWHKDKRELRSGKKYKIMSE-NFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
Query: 399 E 399
+
Sbjct: 283 K 283
Score = 155 bits (394), Expect = 2e-43
Identities = 56/263 (21%), Positives = 92/263 (34%), Gaps = 59/263 (22%)
Query: 307 MMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKL 366
+ V + + +F+ VTG +TW+ D ++ G + + L
Sbjct: 12 PVSVDLALGESGTFK-------CHVTGTAPIKITWAKDNREIRPGGNYKMTLV-ENTATL 63
Query: 367 AISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQ-SPA 425
+ +V +AG Y+C A N G+ +A L V+E P+F K L+P Q
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP------PRFIKKLEPSRIVKQDEHT 117
Query: 426 TLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS 485
+ + G P + WY+ + EI + M F VL + + +D Y
Sbjct: 118 RYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVE--SVAVLEMYNLSVEDSGDY----- 170
Query: 486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESP 545
TC A N AGS + + +L V E P
Sbjct: 171 ----------------------------TCEAHNAAGSASSSTSLK---------VKEPP 193
Query: 546 RFIKTPETAKVMDGQSVLFTAQV 568
F K P + + G V ++
Sbjct: 194 VFRKKPHPVETLKGADVHLECEL 216
Score = 89.8 bits (223), Expect = 5e-20
Identities = 38/164 (23%), Positives = 51/164 (31%), Gaps = 45/164 (27%)
Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
P F V T K VTG I W + EI P + M T
Sbjct: 4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA-- 61
Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
L++ + T D Y TC A NVAG +
Sbjct: 62 TLTVLKVTKGDAGQY---------------------------------TCYASNVAGKDS 88
Query: 526 CTATLSLLPESEVTDVMESPRFIKTPETAK-VMDGQSVLFTAQV 568
C+A L V E PRFIK E ++ V + + ++
Sbjct: 89 CSAQLG---------VQEPPRFIKKLEPSRIVKQDEHTRYECKI 123
Score = 30.5 bits (69), Expect = 1.6
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 542 MESPRFIKTPETAKVMDGQSVLFTAQV 568
M P F P + + G+S F V
Sbjct: 3 MAPPFFDLKPVSVDLALGESGTFKCHV 29
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 239 bits (611), Expect = 2e-73
Identities = 84/405 (20%), Positives = 145/405 (35%), Gaps = 34/405 (8%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVES---- 60
+ F+ + V+ + L C E +P + W+KDG L + +
Sbjct: 21 SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLL 80
Query: 61 VSTLEIINPTKEDIGVYTCKATN--IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAE 118
+ + K D G+Y C+A+ G + + +A ++V +F + + A
Sbjct: 81 IQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGP------LRFLSQTESITAF 134
Query: 119 AQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVY 178
LK V G P P+I W + ++++ P G + +G L IS P D VY
Sbjct: 135 MGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG--ALQISRLQPGDSGVY 192
Query: 179 SVKAVNTFG-RAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG 237
A N R A + + P + ++ ++ + LE +G
Sbjct: 193 RCSARNPASTRTGNEAEVRIL-----SDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSG 247
Query: 238 TPTPEVKWFKNGKEI-VSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSV 296
P P W + + I + + + L+I T +G Y V + S +
Sbjct: 248 YPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAEL 307
Query: 297 TITVA-EAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVT 355
T+ V ++ F V+GKP P V W +G +
Sbjct: 308 TVLVPPWFLNHPSNLYAYESMDIEF-------ECAVSGKPVPTVNWMKNGDVVIPSDYFQ 360
Query: 356 IYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400
I ++ L I V + G Y C A N G A ++A L V +
Sbjct: 361 IVGGSN----LRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401
Score = 212 bits (541), Expect = 3e-63
Identities = 76/463 (16%), Positives = 139/463 (30%), Gaps = 77/463 (16%)
Query: 80 KATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTPSIC 138
+ + + + + F + L + R P I
Sbjct: 2 RWGSELESSHHHHHHGGRR------SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIK 55
Query: 139 WYRGKEEILPDNGHTMEFNPTTGECVLSI--SEATPQDEAVYSVKAVNTFGRAECRANLV 196
W + + + P + +I S DE +Y +A +
Sbjct: 56 WKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAK 115
Query: 197 LRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD 256
+ V + +++ TV L+ E G P P + W KN +++
Sbjct: 116 VM---------VAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIP 166
Query: 257 IETKDNVTK---LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVE 313
+++ V L I + +G Y N A RT + + + +
Sbjct: 167 GDSRVVVLPSGALQISRLQPGDSGVYRCSARNPAST-RTGNEAEVRILSDPGLHRQLYFL 225
Query: 314 SHPTASFQWFIHSEPVV----VTGKPTPLVTWSHDGTPMK-EGKEVTIYQDTDGLCKLAI 368
P+ I + V V+G P P TW ++ K+ ++ ++ L I
Sbjct: 226 QRPSN--VIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSN----LLI 279
Query: 369 SEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLK 428
S V +++G Y+C A+A L V P F + A +
Sbjct: 280 SNVTDDDSGTYTCVVTYKNENISASAELTVL------VPPWFLNHPSNLYAYESMDIEFE 333
Query: 429 ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTE 488
V+G+P P++ W + + ++P + + L I DE Y
Sbjct: 334 CAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSN-----LRILGVVKSDEGFY-------- 380
Query: 489 TKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
C AEN AG+ +A L
Sbjct: 381 -------------------------QCVAENEAGNAQSSAQLI 398
Score = 178 bits (454), Expect = 9e-51
Identities = 65/401 (16%), Positives = 112/401 (27%), Gaps = 79/401 (19%)
Query: 181 KAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-P 239
+ + + + + V + + V L
Sbjct: 2 RWGSELESSHHHHHH-----------GGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRG 50
Query: 240 TPEVKWFKNGKEIVSKDIETK-------DNVTKLVIKQTTKKTTGKYEIRVVNEAGEART 292
P +KW K+G + + K + ++ + K G Y+ +
Sbjct: 51 VPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSII 110
Query: 293 SGSVTITVAEA---ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMK 349
S + + VA + + T V G P P + W + +
Sbjct: 111 SRTAKVMVAGPLRFLSQTESITAFMGDTVLL-------KCEVIGDPMPTIHWQKNQQDLN 163
Query: 350 EGKEVTIYQ-DTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAA-ATLAVEEKEESGEA 407
+ G L IS + P ++G+Y C+A NP A + +
Sbjct: 164 PIPGDSRVVVLPSG--ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQ 221
Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467
F + VIA A L+ V+G P PS W RG+E I + + L
Sbjct: 222 LYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSN----L 277
Query: 468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCT 527
IS T D Y TC +++ +
Sbjct: 278 LISNVTDDDSGTY---------------------------------TCVVTYKNENISAS 304
Query: 528 ATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
A L+ V+ P F+ P + + F V
Sbjct: 305 AELT---------VLVPPWFLNHPSNLYAYESMDIEFECAV 336
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 236 bits (603), Expect = 2e-72
Identities = 84/410 (20%), Positives = 132/410 (32%), Gaps = 38/410 (9%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTM-TWQKDGTELHATEHYLITTVESVSTL 64
P ++ V+ + P + C +EG+ +W+KDG + EH + +L
Sbjct: 6 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDE-GSL 64
Query: 65 EIINPTKEDIGVYTCKATNIGGVATC-SANLIVLEKEESGEAPKFTKPLKPVIAEAQSPA 123
+ P D G Y C A GVA+ + P
Sbjct: 65 VFLRPQASDEGHYQCFAETPAGVASSRVISFRK------TYLIASPAKTHEKTPIEGRPF 118
Query: 124 TLKATV-TGRPTPSICWYRGKEEILPDNGHT-----MEFNPTTGECVLSISEATPQDEAV 177
L + P P I W + P+ T + P +++ D
Sbjct: 119 QLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYK 178
Query: 178 YSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG 237
Y A N E K T D P + ++ + Y
Sbjct: 179 YVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGS 238
Query: 238 TPTPEVKWFKNGKEIVSKD-----IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART 292
P +FKNGK++ + + +L+ K T + G Y V N G+ +
Sbjct: 239 NPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK 298
Query: 293 SGSVTITVAEA----ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPM 348
S+ +TV A + + V+ + P VTG P P V WSH+ P+
Sbjct: 299 H-SLKLTVVSAPKYEQKPEKVIVVKQGQDVTI-------PCKVTGLPAPNVVWSHNAKPL 350
Query: 349 KEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398
G+ TD L I V + G Y C A N G+ + V
Sbjct: 351 SGGR----ATVTDS--GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 187 bits (476), Expect = 5e-54
Identities = 71/449 (15%), Positives = 112/449 (24%), Gaps = 81/449 (18%)
Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTP-SICWYR-GKEEILPDNGHTMEFNPTTG 161
+ P V+ +P L+ + G W + GK ++ + + +
Sbjct: 5 KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS- 63
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQAL 221
L DE Y A G A R R
Sbjct: 64 ---LVFLRPQASDEGHYQCFAETPAGVASSRVISF----------RKTYLIASPAKTHEK 110
Query: 222 LVPKDSTVTLEAEY-TGTPTPEVKWFKNGKEIVSKDIETKDNVT-------KLVIKQTTK 273
+ L+ P P + W K T + L TK
Sbjct: 111 TPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTK 170
Query: 274 KT---TGKYEIRVVNEAGEA-RTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPV 329
+ KY N A + I + + +
Sbjct: 171 EDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVT 230
Query: 330 ----VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCK-LAISEVFPENAGLYSCTAV 384
+ P + +G + E I + K L PE+ G+Y+C
Sbjct: 231 MIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVD 290
Query: 385 NPVGEAVAA-ATLAVEEKEESGEAPKFT-KPLKPVIAEAQSPATLKATVTGRPTPSICWY 442
N VG+ L V APK+ KP K ++ + T+ VTG P P++ W
Sbjct: 291 NGVGKPQKHSLKLTVV------SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWS 344
Query: 443 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLI 502
+ L T+ + L I D+ Y
Sbjct: 345 HN-AKPLSGGRATVTDS------GLVIKGVKNGDKGYY---------------------- 375
Query: 503 SKITRDQIGDVTCRAENVAGSVTCTATLS 531
CRA N G +
Sbjct: 376 -----------GCRATNEHGDKYFETLVQ 393
Score = 166 bits (422), Expect = 3e-46
Identities = 61/380 (16%), Positives = 114/380 (30%), Gaps = 68/380 (17%)
Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP-EVKWFKNGKEIVSKD--IETKDNVT 264
V + P + +L +++ LE G + W K+GK ++ + +
Sbjct: 3 VDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG 62
Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA---ETVMMDVRVESHPTASFQ 321
LV + G Y+ AG A +S ++ +
Sbjct: 63 SLVFLRPQASDEGHYQCFAETPAGVA-SSRVISFRKTYLIASPAKTHEKTPIEGRPFQL- 120
Query: 322 WFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVT-----IYQDTDG-LCKLAISEVFPEN 375
+ V+ P PL+TW + +VT I DG L +++ +
Sbjct: 121 -----DCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSD 175
Query: 376 AGLYSCTAVNPVGE-----AVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKAT 430
Y CTA N + ++ P K ++A+A +
Sbjct: 176 IYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCM 235
Query: 431 VTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK 490
P +++ +++ + + + T L P+DE VY
Sbjct: 236 YGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVY---------- 285
Query: 491 IMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV-TCTATLSLLPESEVTDVMESPRFIK 549
TC +N G + L+ V+ +P++ +
Sbjct: 286 -----------------------TCEVDNGVGKPQKHSLKLT---------VVSAPKYEQ 313
Query: 550 TPETA-KVMDGQSVLFTAQV 568
PE V GQ V +V
Sbjct: 314 KPEKVIVVKQGQDVTIPCKV 333
Score = 105 bits (264), Expect = 8e-25
Identities = 36/255 (14%), Positives = 59/255 (23%), Gaps = 51/255 (20%)
Query: 327 EPVV----VTGKPTPL-VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSC 381
P V + G + +W DG + + +G L + G Y C
Sbjct: 22 NPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG--SLVFLRPQASDEGHYQC 79
Query: 382 TAVNPVGEAV-AAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSI 439
A P G A + P L + P P I
Sbjct: 80 FAETPAGVASSRVISFRKTY------LIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLI 133
Query: 440 CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSV 499
W + P+ T DGN
Sbjct: 134 TWKKRLSGADPNADVTDF----------------------------DRRITAGPDGN--- 162
Query: 500 LLISKITRDQIGDV---TCRAENVAGSVTCT-ATLSLLPESEVTD-VMESPRFIKTPETA 554
L + +T++ + D+ C A+N A + ++ P +
Sbjct: 163 LYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDM 222
Query: 555 KVMDGQSVLFTAQVG 569
G + G
Sbjct: 223 MAKAGDVTMIYCMYG 237
Score = 28.3 bits (63), Expect = 7.5
Identities = 3/29 (10%), Positives = 7/29 (24%)
Query: 540 DVMESPRFIKTPETAKVMDGQSVLFTAQV 568
V + P P + + +
Sbjct: 2 PVDKYPVLKDQPAEVLFRENNPTVLECII 30
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 235 bits (602), Expect = 4e-72
Identities = 83/408 (20%), Positives = 152/408 (37%), Gaps = 33/408 (8%)
Query: 6 APRFIEK-IQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
P ++ + + L C+ +G+P P+ W ++ + + ++ TL
Sbjct: 16 PPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTL 75
Query: 65 EIINPT----KEDIGVYTCKATNIGGVATC-SANLIVLEKEESGEAPKFTK-PLKPVIAE 118
I + +E G Y C A N G A L V ++P + K L PV+ +
Sbjct: 76 VIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQV------SKSPLWPKENLDPVVVQ 129
Query: 119 AQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD-EA 176
+P TL+ G P+P I W E + + + + G L S QD +
Sbjct: 130 EGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGH--NG--DLYFSNVMLQDMQT 185
Query: 177 VYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRP---LQALLVPKDSTVTLEA 233
YS A F + N K T + P+ + P + +V + + LE
Sbjct: 186 DYSCNARFHFTHTIQQKNPFTLKVLT-TRGVAERTPSFMYPQGTASSQMVLRGMDLLLEC 244
Query: 234 EYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTS 293
+G PTP++ W+K G ++ S + ++ L I +++ +G+Y N+ G R +
Sbjct: 245 IASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHT 304
Query: 294 GSVTITVA-EAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGK 352
SV + A ++ + G P P V W +G P++
Sbjct: 305 ISVRVKAAPYWLDEPKNLILAPGEDGRL-------VCRANGNPKPTVQWMVNGEPLQSAP 357
Query: 353 EVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400
+ + + + +Y C N G +A A ++V +
Sbjct: 358 PNPNREVAGD--TIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403
Score = 192 bits (488), Expect = 1e-55
Identities = 78/448 (17%), Positives = 134/448 (29%), Gaps = 82/448 (18%)
Query: 104 EAPKFTK-PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 162
+ P TK K I + + ++ G P PS W R + +G
Sbjct: 15 QPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGT 74
Query: 163 CVLS--ISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIV-RPLQ 219
V+ + E Y A N FG A + +V ++P L
Sbjct: 75 LVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRL----------QVSKSPLWPKENLD 124
Query: 220 ALLVPKDSTVTLEAEYT-GTPTPEVKWFKNGKEIVSKD--IETKDNVTKLVIKQTTKK-T 275
++V + + +TL+ G P+P + W + E +++D + N L +
Sbjct: 125 PVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGD-LYFSNVMLQDM 183
Query: 276 TGKYEIRVVNEAG-EARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVV---- 330
Y + T+ V V E P+ + S +V
Sbjct: 184 QTDYSCNARFHFTHTIQQKNPFTLKVLTTRGV-----AERTPSFMYPQGTASSQMVLRGM 238
Query: 331 -------VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTA 383
+G PTP + W G + K +++ + L I+ V E++G Y C A
Sbjct: 239 DLLLECIASGVPTPDIAWYKKGGDLPSDK--AKFENFNKA--LRITNVSEEDSGEYFCLA 294
Query: 384 VNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYR 443
N +G ++ V+ AP + K +I L G P P++ W
Sbjct: 295 SNKMGSIRHTISVRVK------AAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMV 348
Query: 444 GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS 503
E + + + + AVY
Sbjct: 349 NGEPLQSAPPNPNR---EVAGDTIIFRDTQISSRAVY----------------------- 382
Query: 504 KITRDQIGDVTCRAENVAGSVTCTATLS 531
C N G + A +S
Sbjct: 383 ----------QCNTSNEHGYLLANAFVS 400
Score = 159 bits (403), Expect = 1e-43
Identities = 70/382 (18%), Positives = 123/382 (32%), Gaps = 79/382 (20%)
Query: 208 VLEAPTIVR-PLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNV 263
+ + PTI + + +V + +E E G P P W +N + + +
Sbjct: 13 LTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRS 72
Query: 264 TKLVIKQTTKKT----TGKYEIRVVNEAGEARTSGSVTITVAEAET----VMMDVRVESH 315
LVI + G+Y+ N+ G A S + + V+++ + V V+
Sbjct: 73 GTLVIDFRSGGRPEEYEGEYQCFARNKFGTAL-SNRIRLQVSKSPLWPKENLDPVVVQEG 131
Query: 316 PTASFQWFIHSEPVVVTGKPTPLVTWSHDG-TPMKEGKEVTIYQDTDGLCKLAISEVFPE 374
+ + G P+P++ W P+ + K V+ + D L S V +
Sbjct: 132 APLTL------QCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGD----LYFSNVMLQ 181
Query: 375 NA-GLYSCTAVNPVGEAV---AAATLAVEEKEESGE-APKFTKP---LKPVIAEAQSPAT 426
+ YSC A + TL V E P F P +
Sbjct: 182 DMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLL 241
Query: 427 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS 486
L+ +G PTP I WY+ ++ D FN L I+ + +D Y
Sbjct: 242 LECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKA-----LRITNVSEEDSGEY------ 290
Query: 487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPR 546
C A N GS+ T ++ V +P
Sbjct: 291 ---------------------------FCLASNKMGSIRHTISVR---------VKAAPY 314
Query: 547 FIKTPETAKVMDGQSVLFTAQV 568
++ P+ + G+ +
Sbjct: 315 WLDEPKNLILAPGEDGRLVCRA 336
Score = 91.1 bits (226), Expect = 7e-20
Identities = 48/291 (16%), Positives = 79/291 (27%), Gaps = 67/291 (23%)
Query: 295 SVTITVAEA----ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKE 350
S+ + + + D V+ G P P W+ +
Sbjct: 8 SIQNELTQPPTITKQSAKDHIVDPRDNILI-------ECEAKGNPAPSFHWTRNSRFFNI 60
Query: 351 GKEVTIYQDTDGLCKLAISEVFP----ENAGLYSCTAVNPVGEAV-AAATLAVEEKEESG 405
K+ + L I E G Y C A N G A+ L V
Sbjct: 61 AKDPRVSMRRRS-GTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQV------S 113
Query: 406 EAPKFTK-PLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
++P + K L PV+ + +P TL+ G P+P I W E + +
Sbjct: 114 KSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRV-------- 165
Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITR-DQIGDVTCRAENVAG 522
+G+ L S + D D +C A
Sbjct: 166 --------------------------SQGHNGD---LYFSNVMLQDMQTDYSCNARFHFT 196
Query: 523 SVTCT-ATLSLLPESEVTDVMESPRFI---KTPETAKVMDGQSVLFTAQVG 569
+L + +P F+ T + V+ G +L
Sbjct: 197 HTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIAS 247
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 239 bits (610), Expect = 8e-71
Identities = 87/573 (15%), Positives = 141/573 (24%), Gaps = 104/573 (18%)
Query: 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
L I + FTC+ E T W + L + +
Sbjct: 108 PELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQL--SNGNR 164
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVAT-CSANLIVLEKEESGEAPKFTKPLKPVIAEAQS 121
TL + N T+ D Y C+ N S L VL T +
Sbjct: 165 TLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLY-----GPDAPTISPLNTSYRSGE 219
Query: 122 PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
L P W+ L I T + Y+ +
Sbjct: 220 NLNLSCHAASNPPAQYSWFVN-GTFQQSTQE------------LFIPNITVNNSGSYTCQ 266
Query: 182 AVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP 241
A N+ + KP + + V + V L E T
Sbjct: 267 AHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNP-------VEDEDAVALTCEPEIQNTT 319
Query: 242 EVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA 301
+ W N VS ++ ++ L + T+ G YE + NE S V + V
Sbjct: 320 YLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDH-SDPVILNVL 378
Query: 302 EAETVMM----DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIY 357
S P +W DG + +E
Sbjct: 379 YGPDDPTISPSYTYYRPGVNLSLS-------CHAASNPPAQYSWLIDGNIQQHTQE---- 427
Query: 358 QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPV 417
L IS + +N+GLY+C A N + E
Sbjct: 428 --------LFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAEL--PKPSISSNNSK 477
Query: 418 IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDE 477
E + + T W+ + + + + G L++ T D
Sbjct: 478 PVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLPVSPRLQL----SNGNRTLTLFNVTRNDA 532
Query: 478 AVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV-TCTATLSLLPES 536
Y C +N + + TL
Sbjct: 533 RAY---------------------------------VCGIQNSVSANRSDPVTL------ 553
Query: 537 EVTDVMESP-RFIKTPETAKVMDGQSVLFTAQV 568
DV+ P I +P + + G ++ +
Sbjct: 554 ---DVLYGPDTPIISPPDSSYLSGANLNLSCHS 583
Score = 225 bits (574), Expect = 1e-65
Identities = 84/580 (14%), Positives = 139/580 (23%), Gaps = 114/580 (19%)
Query: 14 QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTEL--HATEHYLITT-------------- 57
P + + L L +W K Y+I T
Sbjct: 7 TPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREI 66
Query: 58 VESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIA 117
+ ++L I N + D G YT V + + E
Sbjct: 67 IYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELP---KPSISSNNSKPV 123
Query: 118 EAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAV 177
E + + + W+ + + + + G L++ T D A
Sbjct: 124 EDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQL----SNGNRTLTLFNVTRNDTAS 178
Query: 178 YSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG 237
Y + N +++L D P + T R + L
Sbjct: 179 YKCETQNPVSARRSD-SVILNVLYGPDAPTISPLNTSYRS--------GENLNLSCHAAS 229
Query: 238 TPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVT 297
P + WF NG + +L I T +G Y + N + T
Sbjct: 230 NPPAQYSWFVNGTFQ--------QSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTT 281
Query: 298 ITVAEAE-----TVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGK 352
ITV T VE + + T W + +
Sbjct: 282 ITVYAEPPKPFITSNNSNPVEDEDAVALT-------CEPEIQNTT-YLWWVNNQSLPVSP 333
Query: 353 EVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAV-AAATLAVEEKEESGEAPKFT 411
+ + D L + V + G Y C N + L V T
Sbjct: 334 RLQLSNDN---RTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGP-----DDPT 385
Query: 412 KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISE 471
+L P W I L IS
Sbjct: 386 ISPSYTYYRPGVNLSLSCHAASNPPAQYSWLID-GNIQQHTQE------------LFISN 432
Query: 472 ATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
T ++ +Y TC+A N A + T +
Sbjct: 433 ITEKNSGLY---------------------------------TCQANNSASGHSRTTVKT 459
Query: 532 LLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYS 571
+ +E+ I + + V D +V FT +
Sbjct: 460 ITVSAELP-----KPSISSNNSKPVEDKDAVAFTCEPEAQ 494
Score = 222 bits (568), Expect = 8e-65
Identities = 77/536 (14%), Positives = 127/536 (23%), Gaps = 105/536 (19%)
Query: 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVST 63
+ +C +P +W +GT +T
Sbjct: 201 YGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQST-----------QE 249
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPA 123
L I N T + G YTC+A N + + E F E +
Sbjct: 250 LFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAE--PPKPFITSNNSNPVEDEDAV 307
Query: 124 TLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAV 183
L + T W+ + + + + L++ T D Y
Sbjct: 308 ALTCEPEIQNTT-YLWWVNNQSLPVSPRLQLSND----NRTLTLLSVTRNDVGPYECGIQ 362
Query: 184 NTFGRAECRANLVLRKATTIDKPRVLEAPTIVR-PLQALLVPKDSTVTLEAEYTGTPTPE 242
N ++ VL P ++L P +
Sbjct: 363 NELSVDHSDPVIL----------NVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQ 412
Query: 243 VKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
W +G +L I T+K +G Y + N A + TITV+
Sbjct: 413 YSWLIDGNIQQHTQ--------ELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSA 464
Query: 303 AETVMM-----DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIY 357
VE +F + T W +G + + +
Sbjct: 465 ELPKPSISSNNSKPVEDKDAVAFT-------CEPEAQNTT-YLWWVNGQSLPVSPRLQLS 516
Query: 358 QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAA-ATLAVEEKEESGEAPKFTKPLKP 416
L + V +A Y C N V + TL V
Sbjct: 517 NGN---RTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYG-----PDTPIISPPD 568
Query: 417 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 476
+ + L P+P W NG + L I++ TP +
Sbjct: 569 SSYLSGANLNLSCHSASNPSPQYSWRI--------NGIPQQHTQV-----LFIAKITPNN 615
Query: 477 EAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532
Y C N+A + S+
Sbjct: 616 NGTY---------------------------------ACFVSNLATGRNNSIVKSI 638
Score = 168 bits (426), Expect = 5e-45
Identities = 62/482 (12%), Positives = 111/482 (23%), Gaps = 97/482 (20%)
Query: 107 KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEIL--------PDNGHTMEFNP 158
K T P L + WY+G+
Sbjct: 1 KLTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPA 60
Query: 159 TTG------ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAP 212
+G L I D Y++ + + E +AT +
Sbjct: 61 YSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNE--------EATGQFRVYPELPK 112
Query: 213 TIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEI-VSKDIETKDNVTKLVIKQT 271
+ + V V E W+ N + + VS ++ + L +
Sbjct: 113 PSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNV 171
Query: 272 TKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMM----DVRVESHPTASFQWFIHSE 327
T+ T Y+ N R S SV + V + S +
Sbjct: 172 TRNDTASYKCETQNPVSARR-SDSVILNVLYGPDAPTISPLNTSYRSGENLNL------- 223
Query: 328 PVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPV 387
P +W +GT + +E L I + N+G Y+C A N
Sbjct: 224 SCHAASNPPAQYSWFVNGTFQQSTQE------------LFIPNITVNNSGSYTCQAHNSD 271
Query: 388 GEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEE 447
+ E F E + L + T W+ +
Sbjct: 272 TGLNRTTVTTITVYAE--PPKPFITSNNSNPVEDEDAVALTCEPEIQNTT-YLWWVNNQS 328
Query: 448 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITR 507
+ + + L++ T D Y
Sbjct: 329 LPVSPRLQLSND----NRTLTLLSVTRNDVGPY--------------------------- 357
Query: 508 DQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIK-TPETAKVMDGQSVLFTA 566
C +N + +V+ P +P G ++ +
Sbjct: 358 ------ECGIQNELSVDHSDPVI--------LNVLYGPDDPTISPSYTYYRPGVNLSLSC 403
Query: 567 QV 568
Sbjct: 404 HA 405
Score = 156 bits (396), Expect = 5e-41
Identities = 46/296 (15%), Positives = 78/296 (26%), Gaps = 37/296 (12%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
+C +P +W DG + L I
Sbjct: 382 DDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGN-----------IQQHTQELFI 430
Query: 67 INPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLK 126
N T+++ G+YTC+A N + + + E E +
Sbjct: 431 SNITEKNSGLYTCQANNSASGHSRTTVKTITVSAEL--PKPSISSNNSKPVEDKDAVAFT 488
Query: 127 ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF 186
+ T W+ + + + + G L++ T D Y N+
Sbjct: 489 CEPEAQNTT-YLWWVNGQSLPVSPRLQL----SNGNRTLTLFNVTRNDARAYVCGIQNSV 543
Query: 187 GRAECRANLVLRKATTIDKPRVLEAPT-IVRPLQALLVPKDSTVTLEAEYTGTPTPEVKW 245
+ VL P + + + L P+P+ W
Sbjct: 544 SANRSDPVTL----------DVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSW 593
Query: 246 FKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA 301
NG + L I + T G Y V N A S +ITV+
Sbjct: 594 RINGIPQ--------QHTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSITVS 641
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 230 bits (589), Expect = 2e-70
Identities = 88/404 (21%), Positives = 148/404 (36%), Gaps = 32/404 (7%)
Query: 6 APRFIEKIQPVV---SHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
P F+++ V+ +E+ +C+V+G+P P + W+ +GT++ + + V+
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG-- 62
Query: 63 TLEIINPTK-EDIGVYTCKATN-IGGVATCSANLIVLEKEESGEAPKF-TKPLKPVIAEA 119
+L I NP K +D G Y C ATN G + + A L F T+ V
Sbjct: 63 SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQF------AYLENFKTRTRSTVSVRR 116
Query: 120 QSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVY 178
L S W + DN + TG L I++ D Y
Sbjct: 117 GQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQE--TG--NLYIAKVEKSDVGNY 172
Query: 179 SVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT 238
+ NT + E V+ + + K +TV LE G
Sbjct: 173 TCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGN 232
Query: 239 PTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
P P + W + + +++ + L I ++ G YE N G+ G +T
Sbjct: 233 PVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTF 292
Query: 299 TVA-EAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIY 357
++ D+ V + + G+P P W +G P+ + I
Sbjct: 293 YAQPNWVQIINDIHVAMEESVFW-------ECKANGRPKPTYRWLKNGDPLLTRDRIQIE 345
Query: 358 QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEK 401
Q T L I+ V +AG+Y C A N G ++A L+V +
Sbjct: 346 QGT-----LNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384
Score = 181 bits (460), Expect = 1e-51
Identities = 83/453 (18%), Positives = 128/453 (28%), Gaps = 91/453 (20%)
Query: 103 GEAPKFTKPLKPVIAEAQS---PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 159
G P F + V+ S L V G P P I W ++
Sbjct: 3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG 62
Query: 160 TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTI-VRPL 218
+ +L + QD Y A N+FG V R+A + R
Sbjct: 63 S---LLINNPNKTQDAGTYQCIATNSFGTI------VSREAKL----QFAYLENFKTRTR 109
Query: 219 QALLVPKDSTVTLEAEYT-GTPTPEVKWFKNGKEIVSKD--IETKDNVTKLVIKQTTKKT 275
+ V + + L + W N + +++ L I + K
Sbjct: 110 STVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQET-GNLYIAKVEKSD 168
Query: 276 TGKYEIRVVNEAGEARTSGSVTITVAEAETVMM------------DVRVESHPTASFQWF 323
G Y V N + G T + + VM V E T
Sbjct: 169 VGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKL--- 225
Query: 324 IHSEPVVVTGKPTPLVTWSH-DGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCT 382
G P P + W DG P+ L I E+AG Y C
Sbjct: 226 ----ECFALGNPVPTILWRRADGKPIARKARRHKSNGI-----LEIPNFQQEDAGSYECV 276
Query: 383 AVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWY 442
A N G+ VA L P + + + + + + GRP P+ W
Sbjct: 277 AENSRGKNVAKGQLTFYA------QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWL 330
Query: 443 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLI 502
+ + +L + +E L+I+ D +Y
Sbjct: 331 KNGDPLLTRDRIQIEQG------TLNITIVNLSDAGMY---------------------- 362
Query: 503 SKITRDQIGDVTCRAENVAGSVTCTATLSLLPE 535
C AEN G + +A LS++ E
Sbjct: 363 -----------QCVAENKHGVIFSSAELSVIAE 384
Score = 177 bits (451), Expect = 2e-50
Identities = 58/304 (19%), Positives = 96/304 (31%), Gaps = 27/304 (8%)
Query: 2 AEVLAPRFIEKIQPVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLITTVES 60
L V + Q + C + W + + +
Sbjct: 98 FAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRF--VSQE 155
Query: 61 VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESG-----EAPKFTKPLKPV 115
L I K D+G YTC TN L G E + + V
Sbjct: 156 TGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETV 215
Query: 116 IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDE 175
AE + L+ G P P+I W R + + + N L I +D
Sbjct: 216 PAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI-----LEIPNFQQEDA 270
Query: 176 AVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEY 235
Y A N+ G+ + L P V+ + + V + +V E +
Sbjct: 271 GSYECVAENSRGKNVAKGQL-----------TFYAQPNWVQIINDIHVAMEESVFWECKA 319
Query: 236 TGTPTPEVKWFKNGKEIVSKD-IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSG 294
G P P +W KNG ++++D I+ + L I G Y+ N+ G +S
Sbjct: 320 NGRPKPTYRWLKNGDPLLTRDRIQIEQGT--LNITIVNLSDAGMYQCVAENKHGVIFSSA 377
Query: 295 SVTI 298
+++
Sbjct: 378 ELSV 381
Score = 158 bits (401), Expect = 2e-43
Identities = 66/373 (17%), Positives = 100/373 (26%), Gaps = 71/373 (19%)
Query: 210 EAPTIVRPLQALLVPKDS---TVTLEAEYTGTPTPEVKWFKNGKEI-VSKDIETKDNVTK 265
P V+ ++ P DS V L E G P P ++W NG ++ + D
Sbjct: 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGS 63
Query: 266 LVIKQTTKKT-TGKYEIRVVNEAGEARTSGSVTITVAEAETVMM----DVRVESHPTASF 320
L+I K G Y+ N G S + A E V V
Sbjct: 64 LLINNPNKTQDAGTYQCIATNSFGTIV-SREAKLQFAYLENFKTRTRSTVSVRRGQGMVL 122
Query: 321 QWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYS 380
W + P + G L I++V + G Y+
Sbjct: 123 ------LCGPPPHSGELSYAWIFNEYPSYQDNRR-FVSQETG--NLYIAKVEKSDVGNYT 173
Query: 381 CTAVNPVGEA---VAAATLAVEEKEESGEA--PKFTKPLKPVIAEAQSPATLKATVTGRP 435
C N V L + GE + + V AE + L+ G P
Sbjct: 174 CVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNP 233
Query: 436 TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDG 495
P+I W R + + + N L I +D Y
Sbjct: 234 VPTILWRRADGKPIARKARRHKSNGI-----LEIPNFQQEDAGSY--------------- 273
Query: 496 NRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAK 555
C AEN G L+ P +++
Sbjct: 274 ------------------ECVAENSRGKNVAKGQLT---------FYAQPNWVQIINDIH 306
Query: 556 VMDGQSVLFTAQV 568
V +SV + +
Sbjct: 307 VAMEESVFWECKA 319
Score = 128 bits (322), Expect = 2e-32
Identities = 41/196 (20%), Positives = 69/196 (35%), Gaps = 17/196 (8%)
Query: 1 MAEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK-DGTELHATEHYLITTVE 59
M E ++ + V + + C G+P+PT+ W++ DG + +
Sbjct: 200 MGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSN-- 257
Query: 60 SVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEA 119
LEI N +ED G Y C A N G L P + + + +
Sbjct: 258 --GILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFY------AQPNWVQIINDIHVAM 309
Query: 120 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYS 179
+ + GRP P+ W + + +L + +E L+I+ D +Y
Sbjct: 310 EESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQG------TLNITIVNLSDAGMYQ 363
Query: 180 VKAVNTFGRAECRANL 195
A N G A L
Sbjct: 364 CVAENKHGVIFSSAEL 379
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 219 bits (559), Expect = 5e-66
Identities = 94/404 (23%), Positives = 139/404 (34%), Gaps = 36/404 (8%)
Query: 6 APRFIEKIQPVV---SHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
P F E+ + E+ TC+ +P T W+ +GTEL V
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVA--G 61
Query: 63 TLEIINPTK-EDIGVYTCKATNIGGVATC-SANLIVLEKEESGEAPKFTK-PLKPVIAEA 119
L I NP K +D G Y C ATN G A+L G +F+ PV
Sbjct: 62 DLVISNPVKAKDAGSYQCVATNARGTVVSREASLRF------GFLQEFSAEERDPVKITE 115
Query: 120 QSPATLKATVT-GRPTPSICWYR-GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAV 177
+ P S W +P +G T L I++ D
Sbjct: 116 GWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG---NLYIAKTEASDLGN 172
Query: 178 YSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTI-VRPLQALLVPKDSTVTLEAEYT 236
YS A + + + + AP+I + VTLE
Sbjct: 173 YSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAF 232
Query: 237 GTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSV 296
G P P++KW K SK + + + L I+ + G YE N G G +
Sbjct: 233 GNPVPQIKWRKLDGSQTSK-WLSSEPL--LHIQNVDFEDEGTYECEAENIKGRDTYQGRI 289
Query: 297 TITVA-EAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVT 355
I + V+ D + + V +GKP P V W DG P+ +
Sbjct: 290 IIHAQPDWLDVITDTEADIGSDLRW-------SCVASGKPRPAVRWLRDGQPLASQNRIE 342
Query: 356 IYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVE 399
+ L S++ E++G+Y C A N G A+A L V+
Sbjct: 343 VSGGE-----LRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
Score = 173 bits (441), Expect = 5e-49
Identities = 59/303 (19%), Positives = 102/303 (33%), Gaps = 29/303 (9%)
Query: 4 VLAPRFIEKIQPVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
L E+ PV + +FTC +P + W + ++
Sbjct: 99 FLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG 158
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVATCS-----ANLIVLEKEESGEAPKF-TKPLKPVI 116
L I D+G Y+C AT+ T S + L + ++ AP K
Sbjct: 159 NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTY 218
Query: 117 AEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEA 176
A TL+ G P P I W + + + E +L I +DE
Sbjct: 219 ALTGQMVTLECFAFGNPVPQIKWRK--------LDGSQTSKWLSSEPLLHIQNVDFEDEG 270
Query: 177 VYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYT 236
Y +A N GR + + + P + + S + +
Sbjct: 271 TYECEAENIKGRDTYQGRI-----------IIHAQPDWLDVITDTEADIGSDLRWSCVAS 319
Query: 237 GTPTPEVKWFKNGKEIVSKD-IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGS 295
G P P V+W ++G+ + S++ IE L + + +G Y+ N+ G S
Sbjct: 320 GKPRPAVRWLRDGQPLASQNRIEVSGGE--LRFSKLVLEDSGMYQCVAENKHGTVYASAE 377
Query: 296 VTI 298
+T+
Sbjct: 378 LTV 380
Score = 171 bits (435), Expect = 3e-48
Identities = 65/441 (14%), Positives = 110/441 (24%), Gaps = 79/441 (17%)
Query: 105 APKFTKPLKPVIAEAQS---PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
P F + + S TL P + W E+
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGD- 62
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTI-VRPLQA 220
++ + +D Y A N G R + R
Sbjct: 63 --LVISNPVKAKDAGSYQCVATNARGTVVSREASL----------RFGFLQEFSAEERDP 110
Query: 221 LLVPKDSTVTLEAEYT-GTPTPEVKWFKNGKEIV---SKDIETKDNVTKLVIKQTTKKTT 276
+ + + V P +W N L I +T
Sbjct: 111 VKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDL 170
Query: 277 GKYEIRVVNEAGEARTS--GSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPV----V 330
G Y + S + AE + + + + V
Sbjct: 171 GNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECF 230
Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEA 390
G P P + W G + + + ++ L L I V E+ G Y C A N G
Sbjct: 231 AFGNPVPQIKWRKLD-----GSQTSKWLSSEPL--LHIQNVDFEDEGTYECEAENIKGRD 283
Query: 391 VAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILP 450
+ + P + + A+ S +G+P P++ W R + +
Sbjct: 284 TYQGRIIIH------AQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLAS 337
Query: 451 DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQI 510
N + L S+ +D +Y
Sbjct: 338 QNRIEVSGG------ELRFSKLVLEDSGMY------------------------------ 361
Query: 511 GDVTCRAENVAGSVTCTATLS 531
C AEN G+V +A L+
Sbjct: 362 ---QCVAENKHGTVYASAELT 379
Score = 146 bits (370), Expect = 4e-39
Identities = 58/374 (15%), Positives = 97/374 (25%), Gaps = 75/374 (20%)
Query: 211 APTIVRPLQALLVPKDS---TVTLEAEYTGTPTPEVKWFKNGKEI--VSKDIETKDNVTK 265
P L P+ S VTL P +W NG E+
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63
Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMM----DVRVESHPTASFQ 321
++ K G Y+ N G S ++ + V++ F
Sbjct: 64 VISNPVKAKDAGSYQCVATNARGTVV-SREASLRFGFLQEFSAEERDPVKITEGWGVMF- 121
Query: 322 WFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIY-QDTDGLCKLAISEVFPENAGLYS 380
P W + P + + T G L I++ + G YS
Sbjct: 122 -----TCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG--NLYIAKTEASDLGNYS 174
Query: 381 CTAVNPVGEA-----VAAATLAVEEKEESGEAPKF-TKPLKPVIAEAQSPATLKATVTGR 434
C A + + + L++ ++ AP K A TL+ G
Sbjct: 175 CFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGN 234
Query: 435 PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD 494
P P I W + + + E +L I +DE Y
Sbjct: 235 PVPQIKWRK--------LDGSQTSKWLSSEPLLHIQNVDFEDEGTY-------------- 272
Query: 495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETA 554
C AEN+ G T + + P ++
Sbjct: 273 -------------------ECEAENIKGRDTYQGRII---------IHAQPDWLDVITDT 304
Query: 555 KVMDGQSVLFTAQV 568
+ G + ++
Sbjct: 305 EADIGSDLRWSCVA 318
Score = 128 bits (324), Expect = 9e-33
Identities = 40/193 (20%), Positives = 64/193 (33%), Gaps = 18/193 (9%)
Query: 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
+ + + Q C G+P+P + W+K + S
Sbjct: 204 QYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQ------TSKWLSSEP 257
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
L I N ED G Y C+A NI G T +I+ P + + A+ S
Sbjct: 258 LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH------AQPDWLDVITDTEADIGSD 311
Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182
+G+P P++ W R + + N + L S+ +D +Y A
Sbjct: 312 LRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGG------ELRFSKLVLEDSGMYQCVA 365
Query: 183 VNTFGRAECRANL 195
N G A L
Sbjct: 366 ENKHGTVYASAEL 378
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 214 bits (547), Expect = 3e-65
Identities = 59/322 (18%), Positives = 106/322 (32%), Gaps = 36/322 (11%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
P F+E + V+ E L CKV + W KD E+ E + + + TL
Sbjct: 7 GPHFVEYLSWEVT-GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--DGICTL 63
Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPAT 124
I +K+D G+Y + G L+ + + IA + +
Sbjct: 64 LITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAF------KELMMEVCKKIALSATDLK 117
Query: 125 LKATVTGR----------PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 174
+++T G + W I + + L I+E TP D
Sbjct: 118 IQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTG--EQIWLQINEPTPND 175
Query: 175 EAVYSVKAVNTFGRAECRANLV----------LRKATTIDKPRVLEAPTIVRPLQALLVP 224
+ Y ++ + + +L ++ A + + +
Sbjct: 176 KGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQ 235
Query: 225 KDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGKYE 280
+ + L G P PEV W KN K + S D I + +GKY
Sbjct: 236 EGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYG 295
Query: 281 IRVVNEAGEARTSGSVTITVAE 302
+ V N+ G + +V++ + E
Sbjct: 296 LVVKNKYGSETSDFTVSVFIPE 317
Score = 200 bits (511), Expect = 6e-60
Identities = 56/332 (16%), Positives = 104/332 (31%), Gaps = 45/332 (13%)
Query: 100 EESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNP 158
+ P F + L + LK V + I WY+ + EI D H +
Sbjct: 2 IDPFTGPHFVEYLSWEVTGEC-NVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--- 57
Query: 159 TTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPL 218
G C L I+E + +D +Y V + G+ + R LV ++ +
Sbjct: 58 -DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV-----------DEAFKELMMEV 105
Query: 219 QALLVPKDSTVTLEAEYTG----------TPTPEVKWFKNGKEIVSKD---IETKDNVTK 265
+ + + +++ G +V W NG I D
Sbjct: 106 CKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIW 165
Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV-AEAETVMMDVRVESHPTASFQWFI 324
L I + T GKY + + + + + ++ EA ++ + + +
Sbjct: 166 LQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVL 225
Query: 325 HSEP--------------VVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISE 370
P V G P P V+W + + + + I+
Sbjct: 226 GGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTING 285
Query: 371 VFPENAGLYSCTAVNPVGEAVAAATLAVEEKE 402
V ++G Y N G + T++V E
Sbjct: 286 VSTADSGKYGLVVKNKYGSETSDFTVSVFIPE 317
Score = 200 bits (511), Expect = 8e-60
Identities = 58/350 (16%), Positives = 108/350 (30%), Gaps = 58/350 (16%)
Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTPEVKWFKNGKEIVSKD-IETKDNVTK 265
P V L V + V L+ + + W+K+ +EI + + KD +
Sbjct: 4 PFTGPHFVEYLSWE-VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICT 62
Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMM-DVRVESHPTASFQWFI 324
L+I + +KK G YE+ + ++ G+ ++ + + + + S Q
Sbjct: 63 LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTA 122
Query: 325 HSEPV---VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSC 381
+ V V WSH+G+ ++ V L I+E P + G Y
Sbjct: 123 EGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVT-GEQIWLQINEPTPNDKGKYVM 181
Query: 382 TAVNPVGEAVAAATLAVEEKE---------------ESGEAPKFTKPLKPVIAEAQSPAT 426
+ L+ + + E A V +
Sbjct: 182 ELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALN 241
Query: 427 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS 486
L V G P P + W + ++ + D+ ++F +I+ + D Y
Sbjct: 242 LTCNVWGDPPPEVSWLKNEKALASDDHCNLKFE-AGRTAYFTINGVSTADSGKY------ 294
Query: 487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS-LLPE 535
+N GS T T+S +PE
Sbjct: 295 ---------------------------GLVVKNKYGSETSDFTVSVFIPE 317
Score = 126 bits (317), Expect = 2e-32
Identities = 38/292 (13%), Positives = 78/292 (26%), Gaps = 84/292 (28%)
Query: 299 TVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQ 358
V V++ +V + + W D + ++
Sbjct: 17 EVTGECNVLLKCKVANIK------------------KETHIVWYKDEREISVDEKHDF-- 56
Query: 359 DTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVI 418
DG+C L I+E ++AG+Y + G+ + L E + + I
Sbjct: 57 -KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAF------KELMMEVCKKI 109
Query: 419 AEAQSPATLKATVTGR----------PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLS 468
A + + +++T G + W I + + L
Sbjct: 110 ALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTG--EQIWLQ 167
Query: 469 ISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTA 528
I+E TP D+ Y + T
Sbjct: 168 INEPTPNDKGKY---------------------------------VMELFDGKTGHQKTV 194
Query: 529 TLS------------LLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
LS L ++ + + + P+ + +G+++ T V
Sbjct: 195 DLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV 246
Score = 76.1 bits (187), Expect = 3e-15
Identities = 28/177 (15%), Positives = 49/177 (27%), Gaps = 40/177 (22%)
Query: 402 EESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNP 460
+ P F + L + LK V + I WY+ + EI D H +
Sbjct: 2 IDPFTGPHFVEYLSWEVTGEC-NVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--- 57
Query: 461 TTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENV 520
G C L I+E + +D +Y ++
Sbjct: 58 -DGICTLLITEFSKKDAGIY---------------------------------EVILKDD 83
Query: 521 AGSVTCTATLSLLPESEVTDVMESPRFIK-TPETAKVMDGQSVLFTAQVGYSERLEI 576
G L E+ + + T + L++ Y E L++
Sbjct: 84 RGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKV 140
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 219 bits (560), Expect = 1e-64
Identities = 69/567 (12%), Positives = 133/567 (23%), Gaps = 105/567 (18%)
Query: 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
+ + + V V+ + W + L+ H+ + V
Sbjct: 45 RPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQN-RGVV 103
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
++ I+ T+ G Y + T + + +T +P + ++
Sbjct: 104 SMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNT------LLYTLR-RPYFRKMENQ 156
Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182
L P P + W + + A
Sbjct: 157 DALVCISESVPEPIVEWVLCDSQGESCK------EESPAVVKKEEKVLHELFGTDIRCCA 210
Query: 183 VNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTP 241
N GR R + + + P L L + + + +
Sbjct: 211 RNELGRECTRLFTI----------DLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGF 258
Query: 242 EVKWFKNGKEIVSKDI---------ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART 292
+ W K + + T + + + TG Y +
Sbjct: 259 GLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ--- 315
Query: 293 SGSVTITVAEAETVMM-----DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTP 347
S +T+ E + D ++ + F V P TW+
Sbjct: 316 --SALVTIVEKGFINATNSSEDYEIDQYEEFCFS-------VRFKAYPQIRCTWTFSRKS 366
Query: 348 MKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEA 407
+ + D ++ G Y A N + TL +
Sbjct: 367 FPCEQ-----KGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRR------- 414
Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467
KP + S + G P PS W + ++ E
Sbjct: 415 -------KPQVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNR----- 462
Query: 468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCT 527
+ +SST ++ + V C A N G+ T
Sbjct: 463 -----KANRKVFGQWVSSST--------------LNMSEAIKGFLVKCCAYNSLGTSCET 503
Query: 528 ATLSLLPESEVTDVMESPRFIKTPETA 554
L + FI+ T
Sbjct: 504 ILL---------NSPGPFPFIQDGGTK 521
Score = 189 bits (480), Expect = 2e-53
Identities = 61/501 (12%), Positives = 116/501 (23%), Gaps = 94/501 (18%)
Query: 72 EDIGVYTC----KATNIGGVATCSANLIVLEKEE------SGEAPKFTKPLKPVIAEAQS 121
+D+ V C N V S+ +V E E ++ V + +
Sbjct: 5 QDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSA 64
Query: 122 PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
TL+ V S W + ++ G + I + T Y +
Sbjct: 65 SITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNR---GVVSMVILKMTETQAGEYLLF 121
Query: 182 AVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP 241
+ + + ++ L P P
Sbjct: 122 IQSEATNYTILFTVS-----------IRNTLLYTLRRPYFRKMENQD-ALVCISESVPEP 169
Query: 242 EVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA 301
V+W + S E V K K + NE G T TI +
Sbjct: 170 IVEWVLCDSQGESCK-EESPAVVKKEEKVLHELFGTDIRCCARNELGRECTR-LFTIDLN 227
Query: 302 EAETVMM-DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDT 360
+ + + ++ V +TW + ++EG + +
Sbjct: 228 QTPQTTLPQLFLKVGEPLWI------RCKAVHVNHGFGLTWELENKALEEGNYFEMSTYS 281
Query: 361 DGL-----CKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLK 415
+S V + G Y+C++ + +A + + EK T +
Sbjct: 282 TNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKGF----INATNSSE 334
Query: 416 PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQ 475
+ P W ++ E +S
Sbjct: 335 DYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSF------PCEQKGLDNGYSISKFCNHKH 388
Query: 476 DEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPE 535
Y AEN T TL
Sbjct: 389 QPGEY---------------------------------IFHAENDDAQFTKMFTL----- 410
Query: 536 SEVTDVMESPRFIKTPETAKV 556
++ P+ + ++
Sbjct: 411 ----NIRRKPQVLAEASASQA 427
Score = 135 bits (342), Expect = 2e-34
Identities = 49/415 (11%), Positives = 105/415 (25%), Gaps = 80/415 (19%)
Query: 169 EATPQDEAVYS----VKAVNTFGRAECRANL-VLRKATTIDKPRVLEAPTIVRPLQALLV 223
E QD V N + + V + ++ V A+ V
Sbjct: 1 ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEV 60
Query: 224 PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDN--VTKLVIKQTTKKTTGKYEI 281
+++TL+ W + + N V +VI + T+ G+Y +
Sbjct: 61 DVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLL 120
Query: 282 RVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTW 341
+ +EA +V+I T+ + + + P P+V W
Sbjct: 121 FIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALV-------CISESVPEPIVEW 173
Query: 342 SHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVA-AATLAVEE 400
+ + + +++ + K + C A N +G T+ +
Sbjct: 174 VLCDSQGE-----SCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDL-- 226
Query: 401 KEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFN 459
L + + P ++ + W + + N M
Sbjct: 227 ------NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTY 280
Query: 460 PTT----GECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTC 515
T +S D Y TC
Sbjct: 281 STNRTMIRILFAFVSSVARNDTGYY---------------------------------TC 307
Query: 516 RAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPE--TAKVMDGQSVLFTAQV 568
+ +A ++ ++E T ++ + F+ +
Sbjct: 308 SSSKHPSQ---SALVT---------IVEKGFINATNSSEDYEIDQYEEFCFSVRF 350
Score = 28.1 bits (62), Expect = 8.2
Identities = 6/67 (8%), Positives = 16/67 (23%), Gaps = 3/67 (4%)
Query: 513 VTCRAENVAGSVTCTATLSLLPESEVTDVM---ESPRFIKTPETAKVMDGQSVLFTAQVG 569
+ N + ++ + E +S + +V S+ V
Sbjct: 14 LINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVD 73
Query: 570 YSERLEI 576
+
Sbjct: 74 APGNISC 80
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 212 bits (542), Expect = 2e-64
Identities = 53/311 (17%), Positives = 107/311 (34%), Gaps = 19/311 (6%)
Query: 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
+ P E + V F C P +W KD + + + + + +
Sbjct: 2 IDPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKM 60
Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSAN-------LIVLEKEESGEAPKFTKPLKPVIA 117
+ +D+G+Y+C T+ G+A+ L+ L E L I
Sbjct: 61 TFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEIL 120
Query: 118 EAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAV 177
E + + ++EI + M + TG + + + +DE
Sbjct: 121 EKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGT 180
Query: 178 YSVKAVNTFGRAECRANLVLRKATTIDK--------PRVLEAPTIVRPLQALLVPKDSTV 229
Y+ + + LV + K + P V L V + V
Sbjct: 181 YTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS-WEVTGECNV 239
Query: 230 TLEAEYTGTPTP-EVKWFKNGKEIV-SKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEA 287
L+ + + W+K+ +EI + + KD + L+I + +KK G YE+ + ++
Sbjct: 240 LLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDR 299
Query: 288 GEARTSGSVTI 298
G+ ++ +
Sbjct: 300 GKDKSRLKLVD 310
Score = 185 bits (471), Expect = 4e-54
Identities = 43/317 (13%), Positives = 95/317 (29%), Gaps = 26/317 (8%)
Query: 103 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 162
G P + + V + + P W + +E +
Sbjct: 1 GIDPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESK--GNK 57
Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTI--VRPLQA 220
++ + D +YS +T G A + + PT+ L
Sbjct: 58 TKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAV 117
Query: 221 LLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVTKLVIKQTTKKT 275
++ K + +V + N KEI I+ + ++ +++ +
Sbjct: 118 EILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDED 177
Query: 276 TGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVT--- 332
G Y ++ + ++ + V + + + + F+ VT
Sbjct: 178 EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGEC 237
Query: 333 ----------GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCT 382
K + W D + ++ + DG+C L I+E ++AG+Y
Sbjct: 238 NVLLKCKVANIKKETHIVWYKDEREISVDEK---HDFKDGICTLLITEFSKKDAGIYEVI 294
Query: 383 AVNPVGEAVAAATLAVE 399
+ G+ + L E
Sbjct: 295 LKDDRGKDKSRLKLVDE 311
Score = 177 bits (451), Expect = 2e-51
Identities = 55/350 (15%), Positives = 105/350 (30%), Gaps = 70/350 (20%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKL 266
P + + ++ E + TP E W K+ +E+K N TK+
Sbjct: 2 IDPFTKEVVVNVDDDGVISLNFECD-KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKM 60
Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHS 326
K G Y V + G A S I E + ++ PT + +
Sbjct: 61 TFKDLGMDDLGIYSCDVTDTDGIAS---SYLIDEEELKRLLALSHEHKFPTVPVKSELAV 117
Query: 327 EPV----------VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTD-GLCKLAISEVFPEN 375
E + V + + + EG + ++ D + G+ ++ + ++ E+
Sbjct: 118 EILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDED 177
Query: 376 AGLYSCTAVNPVGEAVAAATLAVEEKEE-------------SGEAPKFTKPLKPVIAEAQ 422
G Y+ + + L + ++ + P F + L +
Sbjct: 178 EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGEC 237
Query: 423 SPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYS 481
+ LK V + I WY+ + EI D H + G C L I+E + +D +Y
Sbjct: 238 N-VLLKCKVANIKKETHIVWYKDEREISVDEKHDFK----DGICTLLITEFSKKDAGIY- 291
Query: 482 VKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
++ G L
Sbjct: 292 --------------------------------EVILKDDRGKDKSRLKLV 309
Score = 126 bits (318), Expect = 1e-32
Identities = 36/277 (12%), Positives = 77/277 (27%), Gaps = 60/277 (21%)
Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAI 368
+V + + +F+ P +WS D ++ + + K+
Sbjct: 12 NVDDDGVISLNFE--------CDKMTPKSEFSWSKDYVSTEDSPRLEVESK-GNKTKMTF 62
Query: 369 SEVFPENAGLYSCTAVNPVGEAVAAATLAVEEK-------EESGEAPKFTKPLKPVIAEA 421
++ ++ G+YSC + G A + E K E L I E
Sbjct: 63 KDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEK 122
Query: 422 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYS 481
+ + ++EI + M + TG + + + +DE Y
Sbjct: 123 GQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTY- 181
Query: 482 VKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATL----------S 531
T + ++ + T L
Sbjct: 182 --------------------------------TFQLQDGKATNHSTVVLVGDVFKKLQKE 209
Query: 532 LLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
+ + + P F++ + +V +VL +V
Sbjct: 210 AEFQRQEWIRKQGPHFVE-YLSWEVTGECNVLLKCKV 245
Score = 69.2 bits (169), Expect = 5e-13
Identities = 15/167 (8%), Positives = 37/167 (22%), Gaps = 39/167 (23%)
Query: 405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 464
G P + + V + + P W + +E +
Sbjct: 1 GIDPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESK--GNK 57
Query: 465 CVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV 524
++ + D +Y +C + G
Sbjct: 58 TKMTFKDLGMDDLGIY---------------------------------SCDVTDTDGIA 84
Query: 525 TCTATLSLLPESEVTDVMES---PRFIKTPETAKVMDGQSVLFTAQV 568
+ + + E +K+ ++++ V F Q
Sbjct: 85 SSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQA 131
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 206 bits (525), Expect = 5e-62
Identities = 68/300 (22%), Positives = 114/300 (38%), Gaps = 17/300 (5%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE-HYLITTVESVSTL 64
PRFI++ + + A F C+ G P P +TW K G ++++ + + + L
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65
Query: 65 EIIN-PTKEDIGVYTCKATNIGGVATCSANLIVLEKEES-GEAPKFTKPLKPVIAEAQSP 122
I T D VY C A N G T A L VL +++ P + + E
Sbjct: 66 RIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRT 125
Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182
AT+ +G P P I W++ + P + +G L I + D+ Y A
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG--ALQIESSEETDQGKYECVA 183
Query: 183 VNTFGRAE-CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP 241
N+ G ANL +R AP + + V + G+P P
Sbjct: 184 TNSAGVRYSSPANLYVRVQN--------VAPRFSILPMSHEIMPGGNVNITCVAVGSPMP 235
Query: 242 EVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA 301
VKW + +++ +D V + V++ T K + Y ++ G +T+
Sbjct: 236 YVKWMQGAEDLTPEDDMP---VGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSL 292
Score = 183 bits (466), Expect = 2e-53
Identities = 64/359 (17%), Positives = 103/359 (28%), Gaps = 75/359 (20%)
Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIET----KDNV 263
E P ++ + + + + TG P P V W K GK++ S+ ET +
Sbjct: 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 264 TKLVIKQTTKKT-TGKYEIRVVNEAGEARTSGSVTITVAEAETVMM--------DVRVES 314
L I+ YE N GE +T+ + VE
Sbjct: 63 AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVER 122
Query: 315 HPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPE 374
TA+ +G P P +TW D P+ + L I
Sbjct: 123 TRTATML-------CAASGNPDPEITWFKDFLPVDPSASNGRIKQLRS-GALQIESSEET 174
Query: 375 NAGLYSCTAVNPVGEAV-AAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG 433
+ G Y C A N G + A L V + AP+F+ + G
Sbjct: 175 DQGKYECVATNSAGVRYSSPANLYVRVQNV---APRFSILPMSHEIMPGGNVNITCVAVG 231
Query: 434 RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT 493
P P + W +G E++ P++ + + +D A Y
Sbjct: 232 SPMPYVKWMQGAEDLTPEDDMPVG--------RNVLELTDVKDSANY------------- 270
Query: 494 DGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPE 552
TC A + G + A ++ V P+
Sbjct: 271 --------------------TCVAMSSLGVIEAVAQIT---------VKSLPKAGTKHH 300
Score = 181 bits (460), Expect = 1e-52
Identities = 77/325 (23%), Positives = 122/325 (37%), Gaps = 39/325 (12%)
Query: 101 ESGE-APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 159
E+GE P+F K K I + A+ TG P P + W + +++ T+EF+ +
Sbjct: 1 ETGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES 60
Query: 160 TGECVLSISEA-TPQDEAVYSVKAVNTFGRAECRANL-VLRKATTIDKPRVLEAPTIVRP 217
G VL I TP+DE VY A N+ G A L VLR+ P I
Sbjct: 61 AG-AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGF-----PNIDMG 114
Query: 218 LQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEI---VSKDIETKDNVTKLVIKQTTKK 274
Q +V + T T+ +G P PE+ WFK+ + S + L I+ + +
Sbjct: 115 PQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEET 174
Query: 275 TTGKYEIRVVNEAGEARTSGSVTITVAEAET------VMMDVRVESHPTASFQWFIHSEP 328
GKYE N AG R S + V + M + +
Sbjct: 175 DQGKYECVATNSAGV-RYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNIT------- 226
Query: 329 VVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
V G P P V W + ++ + + + +++ Y+C A++ +G
Sbjct: 227 CVAVGSPMPYVKWMQGAEDLTPEDDMPVGR-------NVLELTDVKDSANYTCVAMSSLG 279
Query: 389 EAVAAATLAVEEKEESGEAPKFTKP 413
A A + V+ PK
Sbjct: 280 VIEAVAQITVKSL------PKAGTK 298
Score = 146 bits (371), Expect = 6e-40
Identities = 44/202 (21%), Positives = 74/202 (36%), Gaps = 12/202 (5%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
P Q V + + A C G+P P +TW KD + + L+
Sbjct: 108 FPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQ 167
Query: 66 IINPTKEDIGVYTCKATNIGGVA-TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPAT 124
I + + D G Y C ATN GV + ANL V + AP+F+
Sbjct: 168 IESSEETDQGKYECVATNSAGVRYSSPANLYVRVQN---VAPRFSILPMSHEIMPGGNVN 224
Query: 125 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
+ G P P + W +G E++ P++ + + +D A Y+ A++
Sbjct: 225 ITCVAVGSPMPYVKWMQGAEDLTPEDDMPVG--------RNVLELTDVKDSANYTCVAMS 276
Query: 185 TFGRAECRANLVLRKATTIDKP 206
+ G E A + ++
Sbjct: 277 SLGVIEAVAQITVKSLPKAGTK 298
Score = 139 bits (352), Expect = 3e-37
Identities = 60/263 (22%), Positives = 86/263 (32%), Gaps = 51/263 (19%)
Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAI 368
D S ASF TG P P VTW+ G + + TI D L I
Sbjct: 15 DQIGVSGGVASF-------VCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRI 67
Query: 369 SEVF-PENAGLYSCTAVNPVGEAVAAATLAVEEKEES-GEAPKFTKPLKPVIAEAQSPAT 426
+ P + +Y C A N VGE A L V +++ P + + E AT
Sbjct: 68 QPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTAT 127
Query: 427 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS 486
+ +G P P I W++ + P + +G L I + D+ Y
Sbjct: 128 MLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG--ALQIESSEETDQGKY------ 179
Query: 487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS-VTCTATLSLLPESEVTDVMESP 545
C A N AG + A L V +P
Sbjct: 180 ---------------------------ECVATNSAGVRYSSPANL------YVRVQNVAP 206
Query: 546 RFIKTPETAKVMDGQSVLFTAQV 568
RF P + ++M G +V T
Sbjct: 207 RFSILPMSHEIMPGGNVNITCVA 229
Score = 81.4 bits (201), Expect = 3e-17
Identities = 39/168 (23%), Positives = 61/168 (36%), Gaps = 38/168 (22%)
Query: 403 ESGE-APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 461
E+GE P+F K K I + A+ TG P P + W + +++ T+EF+ +
Sbjct: 1 ETGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES 60
Query: 462 TGECVLSISEA-TPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENV 520
G VL I TP+DE VY C A+N
Sbjct: 61 AG-AVLRIQPLRTPRDENVY---------------------------------ECVAQNS 86
Query: 521 AGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
G +T A L++L E ++ P P+ V ++
Sbjct: 87 VGEITVHAKLTVLREDQLPSGF--PNIDMGPQLKVVERTRTATMLCAA 132
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 209 bits (534), Expect = 5e-62
Identities = 59/494 (11%), Positives = 115/494 (23%), Gaps = 92/494 (18%)
Query: 71 KEDIGVYTC----KATNIGGVATCSANLIVLEKEE------SGEAPKFTKPLKPVIAEAQ 120
+D+ V C N V S+ +V E E ++ V +
Sbjct: 4 NQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVS 63
Query: 121 SPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 180
+ TL+ V S W + ++ + I + T Y +
Sbjct: 64 ASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVV---SMVILKMTETQAGEYLL 120
Query: 181 KAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPT 240
+ + + ++ L P
Sbjct: 121 FIQSEATNYTILFTVS-----------IRNTLLYTLRRPYFRKMENQD-ALVCISESVPE 168
Query: 241 PEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
P V+W + S E V K K + NE G T
Sbjct: 169 PIVEWVLCDSQGESCK-EESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLN 227
Query: 301 AEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDT 360
+T + + ++ V +TW + ++EG + +
Sbjct: 228 QTPQTTLPQLFLKVGEPLWI------RCKAVHVNHGFGLTWELENKALEEGNYFEMSTYS 281
Query: 361 DG-----LCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLK 415
+ +S V + G Y+C++ ++ A + + EK T +
Sbjct: 282 TNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS---ALVTIVEKGF----INATNSSE 334
Query: 416 PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQ 475
+ P W ++ P ++
Sbjct: 335 DYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKS-FPCEQKGLD------------------ 375
Query: 476 DEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPE 535
N + + Q G+ AEN T TL+
Sbjct: 376 --------------------NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLN---- 411
Query: 536 SEVTDVMESPRFIK 549
+ +
Sbjct: 412 -----IRSGTKHHH 420
Score = 194 bits (495), Expect = 2e-56
Identities = 48/414 (11%), Positives = 96/414 (23%), Gaps = 58/414 (14%)
Query: 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
+ + + V V+ + W + L+ H+ + V
Sbjct: 45 RPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQN-RGVV 103
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
++ I+ T+ G Y + T + + +P + ++
Sbjct: 104 SMVILKMTETQAGEYLLFIQSEATNYTILFTVSI-------RNTLLYTLRRPYFRKMENQ 156
Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182
L P P + W + + + E D A
Sbjct: 157 DALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEE---KVLHELFGTD---IRCCA 210
Query: 183 VNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAE-YTGTPTP 241
N GR R + T L L + + + +
Sbjct: 211 RNELGRECTRLFT------------IDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGF 258
Query: 242 EVKWFKNGKEI---------VSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART 292
+ W K + T + + + TG Y +
Sbjct: 259 GLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ--- 315
Query: 293 SGSVTITVAEAETVMM-----DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTP 347
S +T+ E + D ++ + F V P TW+
Sbjct: 316 --SALVTIVEKGFINATNSSEDYEIDQYEEFCFS-------VRFKAYPQIRCTWTFSRKS 366
Query: 348 MKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEK 401
++ D ++ G Y A N + TL +
Sbjct: 367 FPCEQKG-----LDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415
Score = 145 bits (367), Expect = 2e-38
Identities = 52/414 (12%), Positives = 106/414 (25%), Gaps = 78/414 (18%)
Query: 169 EATPQDEAVYS----VKAVNTFGRAECRANL-VLRKATTIDKPRVLEAPTIVRPLQALLV 223
E QD V N + + V + ++ V A+ V
Sbjct: 1 ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEV 60
Query: 224 PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIE--TKDNVTKLVIKQTTKKTTGKYEI 281
+++TL+ W + + V +VI + T+ G+Y +
Sbjct: 61 DVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLL 120
Query: 282 RVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTW 341
+ +EA +V+I T+ + + + P P+V W
Sbjct: 121 FIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDAL-------VCISESVPEPIVEW 173
Query: 342 SHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEK 401
+ + KE + + + E+F + C A N +G
Sbjct: 174 VLCDSQGESCKEESPAVVKKE--EKVLHELFGTD---IRCCARNELGRECTRLFTIDL-- 226
Query: 402 EESGEAPKFTKPLKPVIAEAQSPATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNP 460
L + + P ++ V + W + + N M
Sbjct: 227 -----NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYS 281
Query: 461 TTGECV----LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCR 516
T + +S D Y TC
Sbjct: 282 TNRTMIRILFAFVSSVARNDTGYY---------------------------------TCS 308
Query: 517 AENVAGSVTCTATLSLLPESEVTDVMESPRFIKTP--ETAKVMDGQSVLFTAQV 568
+ +A ++ ++E T E ++ + F+ +
Sbjct: 309 SSKHPSQ---SALVT---------IVEKGFINATNSSEDYEIDQYEEFCFSVRF 350
Score = 115 bits (290), Expect = 4e-28
Identities = 29/205 (14%), Positives = 60/205 (29%), Gaps = 20/205 (9%)
Query: 4 VLAPRFIEKIQPVVSHQEQPALFTCK-VEGHPLPTMTWQKDGTELHATEHYLIT------ 56
L + + +P CK V + +TW+ + L ++ ++
Sbjct: 225 DLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNR 284
Query: 57 TVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVI 116
T+ + + + + D G YTC ++ SA + ++EK T +
Sbjct: 285 TMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALVTIVEKGF----INATNSSEDYE 337
Query: 117 AEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEA 176
+ P W ++ P ++ + +S
Sbjct: 338 IDQYEEFCFSVRFKAYPQIRCTWTFSRKS-FPCEQKGLDNGYS-----ISKFCNHKHQPG 391
Query: 177 VYSVKAVNTFGRAECRANLVLRKAT 201
Y A N + L +R T
Sbjct: 392 EYIFHAENDDAQFTKMFTLNIRSGT 416
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 200 bits (509), Expect = 7e-60
Identities = 64/300 (21%), Positives = 110/300 (36%), Gaps = 24/300 (8%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
+ + V + FTC G P + G ++ +T+ ++ S L
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 63
Query: 66 IINPTKEDIGVYTCKATNIGGVA-TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPAT 124
I N ED G+Y C+AT+ G + L + +K F + + P + A
Sbjct: 64 IYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQK------LTFREVVSPQEFKQGEDAE 117
Query: 125 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
+ V+ P P++ W EE+ + + L I DE +Y +
Sbjct: 118 VVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM---LANNNLQILNINKSDEGIYRCEGRV 174
Query: 185 T-FGRAECRANLVLRKATTIDKPRVLEAPTIVRP--LQALLVPKDSTVTLEAEYTGTPTP 241
G + R +V+ V P I P + +T +G+P P
Sbjct: 175 EARGEIDFRDIIVI----------VNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEP 224
Query: 242 EVKWFKNGKEIV-SKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
+ WF+NGK I ++ K + T+L ++ G Y R N+AGE + + V
Sbjct: 225 AISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 284
Score = 173 bits (440), Expect = 5e-50
Identities = 55/311 (17%), Positives = 95/311 (30%), Gaps = 33/311 (10%)
Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
S + T L V T G P I WY + E + +
Sbjct: 1 SMALLQVTISLSKVELSVGESKFFTCTAIGEPES-IDWYNPQGEKIISTQR-VVVQKEGV 58
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRA-ECRANLVLRKATTIDKPRVLEAPTIVRPLQA 220
L+I A +D +Y +A + G+ E L + + T +
Sbjct: 59 RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLE-----------IYQKLTFREVVSP 107
Query: 221 LLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTG 277
+ + + +P P V W + +E+ + N L I K G
Sbjct: 108 QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEG 166
Query: 278 KYEIRVVNEAGEARTSGSVTITVAEAETVMM-----DVRVESHPTASFQWFIHSEPVVVT 332
Y EA + + V + M + E +F +
Sbjct: 167 IYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFS-------CRAS 219
Query: 333 GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVA 392
G P P ++W +G ++E ++ + +L + + + G Y C A N GE
Sbjct: 220 GSPEPAISWFRNGKLIEENEKYILKGSN---TELTVRNIINSDGGPYVCRATNKAGEDEK 276
Query: 393 AATLAVEEKEE 403
A L V +
Sbjct: 277 QAFLQVFVQHH 287
Score = 171 bits (435), Expect = 3e-49
Identities = 51/347 (14%), Positives = 101/347 (29%), Gaps = 68/347 (19%)
Query: 209 LEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTK 265
+ + L + + + G P + G++I+S ++ + ++
Sbjct: 2 MALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSR 61
Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA---ETVMMDVRVESHPTASFQW 322
L I + G Y + + G+ + + +V + + + V+ + A
Sbjct: 62 LTIYNANIEDAGIYRCQATDAKGQTQEA-TVVLEIYQKLTFREVVSPQEFKQGEDAEV-- 118
Query: 323 FIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCT 382
V+ P P V+W + + + + L I + + G+Y C
Sbjct: 119 -----VCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN--NLQILNINKSDEGIYRCE 171
Query: 383 AVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQ--SPATLKATVTGRPTPSIC 440
+ + V P + P K A A+ T +G P P+I
Sbjct: 172 GRVEARGEIDFRDIIVIVNV----PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAIS 227
Query: 441 WYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL 500
W+R + I + + ++ + T L++ D Y
Sbjct: 228 WFRNGKLIEENEKYILKGSNTE----LTVRNIINSDGGPY-------------------- 263
Query: 501 LISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRF 547
CRA N AG A L V
Sbjct: 264 -------------VCRATNKAGEDEKQAFLQ---------VFVQHHH 288
Score = 119 bits (301), Expect = 2e-30
Identities = 38/261 (14%), Positives = 77/261 (29%), Gaps = 56/261 (21%)
Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAI 368
V + + F G+P + ++ G + + V + ++ +L I
Sbjct: 13 KVELSVGESKFFT-------CTAIGEPESIDWYNPQGEKIISTQRVVVQKE-GVRSRLTI 64
Query: 369 SEVFPENAGLYSCTAVNPVGEAV-AAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATL 427
E+AG+Y C A + G+ A L + +K F + + P + A +
Sbjct: 65 YNANIEDAGIYRCQATDAKGQTQEATVVLEIYQK------LTFREVVSPQEFKQGEDAEV 118
Query: 428 KATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASST 487
V+ P P++ W EE+ + + L I DE +Y
Sbjct: 119 VCRVSSSPAPAVSWLYHNEEVTTISDNRFAM---LANNNLQILNINKSDEGIY------- 168
Query: 488 ETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRF 547
C A + + + +V +
Sbjct: 169 --------------------------RCEGRVEARGEIDFRDIIV-----IVNVPPAISM 197
Query: 548 IKTPETAKVMDGQSVLFTAQV 568
+ A G+ + F+ +
Sbjct: 198 PQKSFNATAERGEEMTFSCRA 218
Score = 93.3 bits (232), Expect = 3e-21
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
A +K + + + F+C+ G P P ++W ++G + E Y++ S + L
Sbjct: 194 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK--GSNTELT 251
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEE 101
+ N D G Y C+ATN G A L V +
Sbjct: 252 VRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHH 287
Score = 69.5 bits (170), Expect = 3e-13
Identities = 24/166 (14%), Positives = 39/166 (23%), Gaps = 45/166 (27%)
Query: 404 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
S + T L V T G P I WY + E + +
Sbjct: 1 SMALLQVTISLSKVELSVGESKFFTCTAIGEPES-IDWYNPQGEKIISTQR-VVVQKEGV 58
Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
L+I A +D +Y C+A + G
Sbjct: 59 RSRLTIYNANIEDAGIY---------------------------------RCQATDAKGQ 85
Query: 524 V-TCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
T L + + F + + G+ +V
Sbjct: 86 TQEATVVLE---------IYQKLTFREVVSPQEFKQGEDAEVVCRV 122
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 198 bits (504), Expect = 9e-57
Identities = 62/566 (10%), Positives = 128/566 (22%), Gaps = 101/566 (17%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
P ++ C G W + + T +
Sbjct: 36 PPSIHPGKSDLIVRVGDEIRLLCTDPGFV----KWTFEILDE--------TNENKQNEWI 83
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATL 125
+ G YTC + S + V + K + + + + +
Sbjct: 84 TEKAEATNTGKYTCTNKHGLSN---SIYVFVRD------PAKLFLVDRSLYGKEDNDTLV 134
Query: 126 KATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEA-VYSVKAVN 184
+ +T P + +G + +P G + I
Sbjct: 135 RCPLTD-PEVTNYSLKGCQGKPLPKDLRFIPDPKAG---IMIKSVKRAYHRLCLHCSVDQ 190
Query: 185 TFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP-EV 243
G++ +L+ P + + L+ + T+ +
Sbjct: 191 E-GKSVLSEKFILKVRPAFKAV-----PVVSVSKASYLLREGEEFTVTCTIKDVSSSVYS 244
Query: 244 KWFKNGKEIVSKDIETKDNVTK--------LVIKQTTKKTTGKYEIRVVNEAGEARTSGS 295
W + + ++ + L I +G + N G A + +
Sbjct: 245 TWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTT 304
Query: 296 VTITVA----EAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTP-LVTWSHDGTPMKE 350
+ + + V V V P P W + +
Sbjct: 305 LEVVDKGFINIFPMINTTVFVNDGENVDL-------IVEYEAFPKPEHQQWIYMNRTFTD 357
Query: 351 GKEVTIYQDTDGLCK----LAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGE 406
E + + + L ++ + G Y+ N A A + V K
Sbjct: 358 KWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTK----- 412
Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466
P+ + L+ G P P+I WY + + + T
Sbjct: 413 -PEIL------TYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLN-- 463
Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC 526
+ I G V C+A N G +
Sbjct: 464 ---------------------SSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSA 502
Query: 527 TATLSLLPESEVTDVMESPRFIKTPE 552
+ + + P
Sbjct: 503 YFNFA---------FKGNNKEQIHPH 519
Score = 155 bits (393), Expect = 3e-41
Identities = 69/497 (13%), Positives = 125/497 (25%), Gaps = 87/497 (17%)
Query: 72 EDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG 131
+ C + V T S+ V E P +I L T G
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSVSPGEP--SPPSIHPGKSDLIVRVGDEIRLLCTDPG 62
Query: 132 RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAEC 191
+ W T E +A + Y+ C
Sbjct: 63 ----FVKWTF------EILDETNENKQNE----WITEKAEATNTGKYT-----------C 97
Query: 192 RANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKE 251
L + + V + + ++L +D+ + T +
Sbjct: 98 TNKHGLSNSIYVF---VRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGK 154
Query: 252 IVSKDIE-TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDV 310
+ KD+ D ++IK + V++ G++ S + V A + V
Sbjct: 155 PLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVV 214
Query: 311 RVESHPTASFQWFIHSEPVV----VTGKPTPL-VTWSHDGTPMKEGKEVTIYQDTDGLCK 365
V + E + + + TW + + K ++ + D +
Sbjct: 215 SVSKASYLLRE----GEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYE 270
Query: 366 ----LAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEA 421
L IS ++G++ C A N G A TL V +K G F V
Sbjct: 271 RQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDK---GFINIFPMINTTVFVND 327
Query: 422 QSPATLKATVTGRPTPS-ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVY 480
L P P W P+ E
Sbjct: 328 GENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDY------------------PKSENES 369
Query: 481 SVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTD 540
+++ S L ++++ + G T N + +
Sbjct: 370 NIRYVSE------------LHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVY--------- 408
Query: 541 VMESPRFIKTPETAKVM 557
V P + M
Sbjct: 409 VNTKPEILTYDRLVNGM 425
Score = 33.1 bits (75), Expect = 0.23
Identities = 8/55 (14%), Positives = 13/55 (23%), Gaps = 5/55 (9%)
Query: 511 GDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFT 565
D C + T ++ S+ P P V G +
Sbjct: 8 WDFLCVLLLLLRVQTGSSQPSVSPG-----EPSPPSIHPGKSDLIVRVGDEIRLL 57
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 192 bits (489), Expect = 6e-56
Identities = 79/410 (19%), Positives = 125/410 (30%), Gaps = 42/410 (10%)
Query: 6 APRFIEKIQPVVSHQE-QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
P F+++ + A CK G+P+P + W + L L
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSD-GKL 61
Query: 65 EIINPTKEDI------GVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAE 118
ED VY C A N G + A + +
Sbjct: 62 VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRA-----VVAQYYEADVNKEHVI 116
Query: 119 AQSPATLKATV---TGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD- 174
+ A +K + + W+ +EE L I E P+D
Sbjct: 117 RGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDG 176
Query: 175 EAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAE 234
Y + + E R + + + T + L + T++L
Sbjct: 177 YKSYQCRTKHRLTG-ETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCP 235
Query: 235 YTGTPTPEVKWFKNGKEIVSKDIETKDNVTK-----LVIKQTTKKTTGKYEIRVVNEAGE 289
G P P +W+K + K ++ K L+IK + +GKY V N G
Sbjct: 236 AQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG 295
Query: 290 ARTSGSVTITVA-EAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPM 348
+T+T A+ V+ A F TG P V+W DG +
Sbjct: 296 ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVF-------TCQYTGNPIKTVSWMKDGKAI 348
Query: 349 KEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398
+ V L I V E+ G+Y C N A A+A L +
Sbjct: 349 GHSESV-----------LRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 184 bits (468), Expect = 7e-53
Identities = 72/451 (15%), Positives = 117/451 (25%), Gaps = 87/451 (19%)
Query: 104 EAPKFTK-PLKPVIAEAQSPATLKATVTGRPTPSICWYR-GKEEILPDNGHTMEFNPTTG 161
+ P F K P + + A ++ +G P P I W R + G +
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK- 60
Query: 162 ECVLSISEATPQD------EAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIV 215
L +D VY+ A N FG R V R + A
Sbjct: 61 ---LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHV----------RAVVAQYYE 107
Query: 216 RPLQALLVPKDSTVTLE---AEYTGTPTPEVKWFKNGKEIVSKDIETKDNVT-----KLV 267
+ V + ++ ++ + V W + +E E +L
Sbjct: 108 ADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELH 167
Query: 268 IKQTTKK-TTGKYEIRVVNEAG-EARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIH 325
I++ + Y+ R + E R S + V R + + +
Sbjct: 168 IREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVA 227
Query: 326 SE---PVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCK-LAISEVFPENAGLYSC 381
G P P W + V + + L I + E++G Y C
Sbjct: 228 HTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLC 287
Query: 382 TAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICW 441
N VG L V + PA TG P ++ W
Sbjct: 288 VVNNSVGGESVETVLTVTA------PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSW 341
Query: 442 YRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL 501
+ + I VL I +D+ +Y
Sbjct: 342 MKDGKAIGHSES------------VLRIESVKKEDKGMY--------------------- 368
Query: 502 ISKITRDQIGDVTCRAENVAGSVTCTATLSL 532
C N S +A L L
Sbjct: 369 ------------QCFVRNDRESAEASAELKL 387
Score = 168 bits (426), Expect = 6e-47
Identities = 57/305 (18%), Positives = 94/305 (30%), Gaps = 28/305 (9%)
Query: 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGH---PLPTMTWQKDGTELHATEHYLITTVES 60
V+A + + + A+ C + + ++W D E +
Sbjct: 101 VVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV 160
Query: 61 VS--TLEIINPTKED-IGVYTCKATNIGGVATC---SANLIVLEKEESGEAPKFTKPL-K 113
+ L I ED Y C+ + T + +V+ + S AP+ + K
Sbjct: 161 LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQK 220
Query: 114 PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQ 173
P+ +L G P PS WY+ E + L I +A +
Sbjct: 221 PLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE 280
Query: 174 DEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEA 233
D Y N+ G L V + V
Sbjct: 281 DSGKYLCVVNNSVGGESVETVLT-----------VTAPLSAKIDPPTQTVDFGRPAVFTC 329
Query: 234 EYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTS 293
+YTG P V W K+GK I + + L I+ K+ G Y+ V N+ A S
Sbjct: 330 QYTGNPIKTVSWMKDGKAIGHSE-------SVLRIESVKKEDKGMYQCFVRNDRESAEAS 382
Query: 294 GSVTI 298
+ +
Sbjct: 383 AELKL 387
Score = 148 bits (374), Expect = 1e-39
Identities = 65/379 (17%), Positives = 101/379 (26%), Gaps = 69/379 (18%)
Query: 210 EAPTIVR-PLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVT--KL 266
+ P ++ P + + +E + +G P PE+ W ++ V + + KL
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61
Query: 267 VIKQTT------KKTTGKYEIRVVNEAGEARTSGSVTITVAEA---ETVMMDVRVESHPT 317
V + Y N+ G S V + A E + V +
Sbjct: 62 VFPPFRAEDYRQEVHAQVYACLARNQFGSII-SRDVHVRAVVAQYYEADVNKEHVIRGNS 120
Query: 318 ASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVT---IYQDTDGLCKLAISEVFPE 374
A + I S +V+W D G +L I EV PE
Sbjct: 121 AVIKCLIPSFV----ADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG--ELHIREVGPE 174
Query: 375 NA-GLYSCTAVNPVGEAV----AAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKA 429
+ Y C + + L + E S KP+ +L
Sbjct: 175 DGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLC 234
Query: 430 TVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTET 489
G P PS WY+ E + L I +A +D Y
Sbjct: 235 PAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKY--------- 285
Query: 490 KIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIK 549
C N G + L+ V
Sbjct: 286 ------------------------LCVVNNSVGGESVETVLT---------VTAPLSAKI 312
Query: 550 TPETAKVMDGQSVLFTAQV 568
P T V G+ +FT Q
Sbjct: 313 DPPTQTVDFGRPAVFTCQY 331
Score = 55.3 bits (133), Expect = 3e-08
Identities = 22/177 (12%), Positives = 43/177 (24%), Gaps = 43/177 (24%)
Query: 406 EAPKFTK-PLKPVIAEAQSPATLKATVTGRPTPSICWYR-GKEEILPDNGHTMEFNPTTG 463
+ P F K P + + A ++ +G P P I W R + G +
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK- 60
Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
L +D C A N GS
Sbjct: 61 ---LVFPPFRAEDYR---------------------------QEVHAQVYACLARNQFGS 90
Query: 524 V-TCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEIPLI 579
+ + + + + + V+ G S + + + ++
Sbjct: 91 IISRDVHVR---------AVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVV 138
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 182 bits (463), Expect = 2e-54
Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 4/194 (2%)
Query: 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE-HYLITTVES-VS 62
+AP F E+++ + + A CKV GHP P + W + G E+ A Y I +
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
L I + T +D VY +ATN GG + +A+L V + PK + + V A
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI-HLPKTLEGMGAVHALRGEV 121
Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182
++K +G+P P I W +G++ I + + + + ++ + +D Y V A
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR-SFTSLVFPNGVERKDAGFYVVCA 180
Query: 183 VNTFGRAECRANLV 196
N FG + L
Sbjct: 181 KNRFGIDQKTVELD 194
Score = 168 bits (428), Expect = 2e-49
Identities = 50/201 (24%), Positives = 82/201 (40%), Gaps = 10/201 (4%)
Query: 103 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 162
AP F + L+ + QS ATL VTG P P + WYR +EI+ D G
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALL 222
L I+ T D VY V+A N G A+L ++ P + P + + A+
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASL------EVEVPAKIHLPKTLEGMGAVH 115
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGK 278
+ V+++ ++G P P + W K I + I T+ + + +K G
Sbjct: 116 ALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175
Query: 279 YEIRVVNEAGEARTSGSVTIT 299
Y + N G + + + +
Sbjct: 176 YVVCAKNRFGIDQKTVELDVA 196
Score = 152 bits (386), Expect = 2e-43
Identities = 48/202 (23%), Positives = 75/202 (37%), Gaps = 18/202 (8%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVT 264
AP L+ L V S TL + TG P P VKW++ GKEI++ E K
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV------MMDVRVESHPTA 318
+L+I T Y++R N+ G + S+ + V + M V
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122
Query: 319 SFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGL 378
S + + +GKP P++TW + + + + V ++AG
Sbjct: 123 SIK-------IPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175
Query: 379 YSCTAVNPVGEAVAAATLAVEE 400
Y A N G L V +
Sbjct: 176 YVVCAKNRFGIDQKTVELDVAD 197
Score = 149 bits (378), Expect = 3e-42
Identities = 44/224 (19%), Positives = 77/224 (34%), Gaps = 43/224 (19%)
Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMK-EGKEVTIYQDTDGLCKLA 367
++ V A+ VTG P P+V W G + +G + I + G +L
Sbjct: 13 NLNVRYQSNATLV-------CKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI 65
Query: 368 ISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATL 427
I+ V ++A +Y A N G A+L VE + PK + + V A ++
Sbjct: 66 IASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI-HLPKTLEGMGAVHALRGEVVSI 124
Query: 428 KATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASST 487
K +G+P P I W +G++ I + + + + ++ + +D Y
Sbjct: 125 KIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR-SFTSLVFPNGVERKDAGFY------- 176
Query: 488 ETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
A+N G T L
Sbjct: 177 --------------------------VVCAKNRFGIDQKTVELD 194
Score = 108 bits (271), Expect = 2e-27
Identities = 41/164 (25%), Positives = 57/164 (34%), Gaps = 37/164 (22%)
Query: 405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 464
AP F + L+ + QS ATL VTG P P + WYR +EI+ D G
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 465 CVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV 524
L I+ T D VY RA N GSV
Sbjct: 62 HQLIIASVTDDDATVY---------------------------------QVRATNQGGSV 88
Query: 525 TCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
+ TA+L + EV + P+ ++ + G+ V
Sbjct: 89 SGTASLEV----EVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF 128
Score = 107 bits (270), Expect = 4e-27
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Query: 2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESV 61
A++ P+ +E + V + + + G P P +TWQK + HY + S
Sbjct: 100 AKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSF 159
Query: 62 STLEIINP-TKEDIGVYTCKATNIGGVATCSANLIVLE 98
++L N ++D G Y A N G+ + L V +
Sbjct: 160 TSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD 197
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 177 bits (450), Expect = 2e-52
Identities = 62/193 (32%), Positives = 91/193 (47%), Gaps = 7/193 (3%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE--HYLITTVESVST 63
AP F + +Q VV + A F + G P+P ++W +DG + + I+ + +
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPA 123
L I TK + G Y+ KATN G AT +A L+V + P F + L+ + S
Sbjct: 65 LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAET---APPNFVQRLQSMTVRQGSQV 121
Query: 124 TLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAV 183
L+ VTG PTP + +YR EI + L I+EA P+D YSV A
Sbjct: 122 RLQVRVTGIPTPVVKFYRDGAEIQSSLDFQIS--QEGDLYSLLIAEAYPEDSGTYSVNAT 179
Query: 184 NTFGRAECRANLV 196
N+ GRA A L+
Sbjct: 180 NSVGRATSTAELL 192
Score = 167 bits (426), Expect = 4e-49
Identities = 58/200 (29%), Positives = 101/200 (50%), Gaps = 11/200 (5%)
Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
+ +AP FT+PL+ V+ S AT +A ++G P P + W+R + I ++ + + G
Sbjct: 2 TTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG 61
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQAL 221
L+I T + YS+KA N G+A A L+++ T P V+ LQ++
Sbjct: 62 RAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAET--------APPNFVQRLQSM 113
Query: 222 LVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGK 278
V + S V L+ TG PTP VK++++G EI S I + ++ L+I + + +G
Sbjct: 114 TVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGT 173
Query: 279 YEIRVVNEAGEARTSGSVTI 298
Y + N G A ++ + +
Sbjct: 174 YSVNATNSVGRATSTAELLV 193
Score = 157 bits (398), Expect = 5e-45
Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 17/201 (8%)
Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDN 262
+APT +PLQ+++V + ST T EA +G P PEV WF++G+ I + I D
Sbjct: 2 TTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG 61
Query: 263 VTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA----ETVMMDVRVESHPTA 318
KL I TK +G+Y ++ N +G+A ++ + + A + + V
Sbjct: 62 RAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQV 121
Query: 319 SFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGL 378
V VTG PTP+V + DG ++ + I Q+ L L I+E +PE++G
Sbjct: 122 RL-------QVRVTGIPTPVVKFYRDGAEIQSSLDFQISQE-GDLYSLLIAEAYPEDSGT 173
Query: 379 YSCTAVNPVGEAVAAATLAVE 399
YS A N VG A + A L V+
Sbjct: 174 YSVNATNSVGRATSTAELLVQ 194
Score = 149 bits (378), Expect = 3e-42
Identities = 58/224 (25%), Positives = 81/224 (36%), Gaps = 46/224 (20%)
Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTI-YQDTDGLCKLA 367
V V TA+F+ ++G P P V+W DG + + +DG KL
Sbjct: 14 SVVVLEGSTATFE-------AHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLT 66
Query: 368 ISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATL 427
I V N+G YS A N G+A + A L V+ + P F + L+ + S L
Sbjct: 67 IPAVTKANSGRYSLKATNGSGQATSTAELLVKAET---APPNFVQRLQSMTVRQGSQVRL 123
Query: 428 KATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASST 487
+ VTG PTP + +YR EI + L I+EA P+D Y
Sbjct: 124 QVRVTGIPTPVVKFYRDGAEIQSSLDFQIS--QEGDLYSLLIAEAYPEDSGTY------- 174
Query: 488 ETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
+ A N G T TA L
Sbjct: 175 --------------------------SVNATNSVGRATSTAELL 192
Score = 110 bits (276), Expect = 5e-28
Identities = 36/165 (21%), Positives = 61/165 (36%), Gaps = 39/165 (23%)
Query: 404 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
+ +AP FT+PL+ V+ S AT +A ++G P P + W+R + I ++ + + G
Sbjct: 2 TTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG 61
Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
L+I T + Y + +A N +G
Sbjct: 62 RAKLTIPAVTKANSGRY---------------------------------SLKATNGSGQ 88
Query: 524 VTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
T TA L V P F++ ++ V G V +V
Sbjct: 89 ATSTAEL------LVKAETAPPNFVQRLQSMTVRQGSQVRLQVRV 127
Score = 103 bits (259), Expect = 1e-25
Identities = 29/95 (30%), Positives = 48/95 (50%)
Query: 2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESV 61
AE P F++++Q + Q +V G P P + + +DG E+ ++ + I+ +
Sbjct: 99 AETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDL 158
Query: 62 STLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
+L I ED G Y+ ATN G AT +A L+V
Sbjct: 159 YSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 173 bits (441), Expect = 3e-51
Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 12/195 (6%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
AP ++++ V + + A +C++ G PLP + W + G EL + Y +++ TL
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPL---KPVIAEAQSP 122
++ +ED GVYTC ATN G S+ L++ P+F + S
Sbjct: 67 VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQAT------PQFHPGYPLKEKYYGAVGST 120
Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQ-DEAVYSVK 181
L GRP P++ W+ G++ + T+E L + + Y V+
Sbjct: 121 LRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTE--HYTHLVMKNVQRKTHAGKYKVQ 178
Query: 182 AVNTFGRAECRANLV 196
N FG + ++
Sbjct: 179 LSNVFGTVDAILDVE 193
Score = 164 bits (416), Expect = 1e-47
Identities = 56/205 (27%), Positives = 84/205 (40%), Gaps = 20/205 (9%)
Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
SGEAP K +K V + A L + GRP P I WYR +E++ + M +
Sbjct: 4 SGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDG--R 61
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPL--- 218
L++ +DE VY+ A N G E + L + P
Sbjct: 62 THTLTVMTEEQEDEGVYTCIATNEVGEVETSSKL-----------LLQATPQFHPGYPLK 110
Query: 219 QALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKT 275
+ ST+ L Y G P P + WF K + + + IE ++ T LV+K +KT
Sbjct: 111 EKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKT 170
Query: 276 -TGKYEIRVVNEAGEARTSGSVTIT 299
GKY++++ N G V I
Sbjct: 171 HAGKYKVQLSNVFGTVDAILDVEIQ 195
Score = 147 bits (374), Expect = 1e-41
Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 16/200 (8%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKL 266
EAP I + ++ + L + G P P++KW++ GKE++ + + L
Sbjct: 6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTL 65
Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA----EAETVMMDVRVESHPTASFQW 322
+ ++ G Y NE GE TS + + + T
Sbjct: 66 TVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLH- 124
Query: 323 FIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPEN-AGLYSC 381
V+ G+P P +TW H ++ + +TI + L + V + AG Y
Sbjct: 125 ------VMYIGRPVPAMTWFHGQKLLQNSENITIENT-EHYTHLVMKNVQRKTHAGKYKV 177
Query: 382 TAVNPVGEAVAAATLAVEEK 401
N G A + +++K
Sbjct: 178 QLSNVFGTVDAILDVEIQDK 197
Score = 139 bits (352), Expect = 2e-38
Identities = 39/229 (17%), Positives = 70/229 (30%), Gaps = 53/229 (23%)
Query: 307 MMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKL 366
M DV + A + G+P P + W G + + ++ + D L
Sbjct: 14 MKDVTTKLGEAAQLS-------CQIVGRPLPDIKWYRFGKELIQSRKYKMSSD-GRTHTL 65
Query: 367 AISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPL---KPVIAEAQS 423
+ E+ G+Y+C A N VGE ++ L ++ P+F + S
Sbjct: 66 TVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQAT------PQFHPGYPLKEKYYGAVGS 119
Query: 424 PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQ-DEAVYSV 482
L GRP P++ W+ G++ + T+E L + + Y
Sbjct: 120 TLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTE--HYTHLVMKNVQRKTHAGKY-- 175
Query: 483 KASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
+ NV G+V +
Sbjct: 176 -------------------------------KVQLSNVFGTVDAILDVE 193
Score = 99.4 bits (248), Expect = 3e-24
Identities = 36/168 (21%), Positives = 54/168 (32%), Gaps = 47/168 (27%)
Query: 404 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
SGEAP K +K V + A L + GRP P I WYR +E++ + M +
Sbjct: 4 SGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDG--R 61
Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
L++ +DE VY TC A N G
Sbjct: 62 THTLTVMTEEQEDEGVY---------------------------------TCIATNEVGE 88
Query: 524 VTCTATLSLLPESEVTDVMESPRFIK---TPETAKVMDGQSVLFTAQV 568
V ++ L + +P+F E G ++
Sbjct: 89 VETSSKLL---------LQATPQFHPGYPLKEKYYGAVGSTLRLHVMY 127
Score = 97.1 bits (242), Expect = 2e-23
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 4/98 (4%)
Query: 6 APRFIEKI---QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
P+F + G P+P MTW L +E+ I E +
Sbjct: 100 TPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYT 159
Query: 63 TLEIINPTKE-DIGVYTCKATNIGGVATCSANLIVLEK 99
L + N ++ G Y + +N+ G ++ + +K
Sbjct: 160 HLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK 197
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 174 bits (442), Expect = 4e-50
Identities = 56/306 (18%), Positives = 99/306 (32%), Gaps = 30/306 (9%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPL-PTMTWQKDGTELHATEHYLITTV---ESVS 62
+ + F C+V G ++W E + I+ V + S
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVA-TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQS 121
TL I N +D G+Y C T G + N+ + +K F P +
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK------LMFKNAPTPQEFKEGE 116
Query: 122 PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
A + V P+I W +++ L I DE Y +
Sbjct: 117 DAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN---YLQIRGIKKTDEGTYRCE 173
Query: 182 AVNTFGRAECRANLVLRKATTIDKPRVLEAPTIV--RPLQALLVPKDSTVTLEAEYTGTP 239
++ + V PT+ + + +VTL + G P
Sbjct: 174 GRILARGEINFKDIQV---------IVNVPPTVQARQSIVNATANLGQSVTLVCDADGFP 224
Query: 240 TPEVKWFKNGKEIVSKD-----IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSG 294
P + W K+G+ I +++ D+ ++L I+ K +Y N+AGE S
Sbjct: 225 EPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASI 284
Query: 295 SVTITV 300
+ +
Sbjct: 285 HLKVFA 290
Score = 153 bits (389), Expect = 1e-42
Identities = 49/307 (15%), Positives = 90/307 (29%), Gaps = 29/307 (9%)
Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPT-PSICWYR-GKEEILPDNGHTMEFNPTTGEC 163
+ V G I W+ E++ P+
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 164 VLSISEATPQDEAVYSVKAVNTFG-RAECRANLVLRKATTIDKPRVLEAPTIVRPLQALL 222
L+I A D +Y G ++E N+ + +
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVK-----------IFQKLMFKNAPTPQE 111
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIE--TKDNVTKLVIKQTTKKTTGKYE 280
+ + + + P + W G++++ K + L I+ K G Y
Sbjct: 112 FKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYR 171
Query: 281 IRVVNEAGEARTSGSVTITVAEAETV-----MMDVRVESHPTASFQWFIHSEPVVVTGKP 335
A + + V TV +++ + + G P
Sbjct: 172 CEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLV-------CDADGFP 224
Query: 336 TPLVTWSHDGTPMKEGKEVTI-YQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAA 394
P ++W+ DG P++ +E + +D +L I V + Y C A N GE A+
Sbjct: 225 EPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASI 284
Query: 395 TLAVEEK 401
L V K
Sbjct: 285 HLKVFAK 291
Score = 149 bits (378), Expect = 4e-41
Identities = 53/332 (15%), Positives = 90/332 (27%), Gaps = 59/332 (17%)
Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPT-PEVKWFK-NGKEIVSKD-----IETKDNVT 264
+ + + + G ++ WF NG+++ + D+ +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVM---MDVRVESHPTASFQ 321
L I G Y+ V E G ++ +V + + + + A
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGT-QSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVI- 120
Query: 322 WFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSC 381
V P + W H G + K+V ++ L I + + G Y C
Sbjct: 121 ------VCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN--YLQIRGIKKTDEGTYRC 172
Query: 382 TAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQ--SPATLKATVTGRPTPSI 439
+ + V P V A A TL G P P++
Sbjct: 173 EGRILARGEINFKDIQVIVNV----PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTM 228
Query: 440 CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSV 499
W + E I + + + L+I DEA Y
Sbjct: 229 SWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEY------------------- 269
Query: 500 LLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
C AEN AG + L
Sbjct: 270 --------------VCIAENKAGEQDASIHLK 287
Score = 135 bits (342), Expect = 5e-36
Identities = 41/197 (20%), Positives = 67/197 (34%), Gaps = 8/197 (4%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
F P + + A+ C V PT+ W+ G ++ + + + + L+
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQ 158
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ--SPA 123
I K D G Y C+ + ++ V+ P V A A
Sbjct: 159 IRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNV----PPTVQARQSIVNATANLGQSV 214
Query: 124 TLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAV 183
TL G P P++ W + E I + + + L+I DEA Y A
Sbjct: 215 TLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAE 274
Query: 184 NTFGRAECRANL-VLRK 199
N G + +L V K
Sbjct: 275 NKAGEQDASIHLKVFAK 291
Score = 104 bits (261), Expect = 4e-25
Identities = 34/274 (12%), Positives = 60/274 (21%), Gaps = 72/274 (26%)
Query: 297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKE--V 354
++ E+ +V ++W + +
Sbjct: 11 QGEISVGESKFFLCQVAGDA------------------KDKDISWFSPNGEKLSPNQQRI 52
Query: 355 TIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAV-AAATLAVEEKEESGEAPKFTKP 413
++ + D L I ++AG+Y C G A + + +K F
Sbjct: 53 SVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK------LMFKNA 106
Query: 414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEAT 473
P + A + V P+I W +++ L I
Sbjct: 107 PTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN---YLQIRGIK 163
Query: 474 PQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533
DE Y C +A + +
Sbjct: 164 KTDEGTY---------------------------------RCEGRILARGEINFKDIQV- 189
Query: 534 PESEVTDVMESPRFIKTPET--AKVMDGQSVLFT 565
V P A GQSV
Sbjct: 190 ------IVNVPPTVQARQSIVNATANLGQSVTLV 217
Score = 56.8 bits (137), Expect = 5e-09
Identities = 17/161 (10%), Positives = 32/161 (19%), Gaps = 45/161 (27%)
Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPT-PSICWYR-GKEEILPDNGHTMEFNPTTGEC 465
+ V G I W+ E++ P+
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS-V 524
L+I A D +Y C G+
Sbjct: 63 TLTIYNANIDDAGIY---------------------------------KCVVTAEDGTQS 89
Query: 525 TCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFT 565
T + + + F P + +G+ +
Sbjct: 90 EATVNVK---------IFQKLMFKNAPTPQEFKEGEDAVIV 121
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 172 bits (438), Expect = 3e-49
Identities = 66/342 (19%), Positives = 109/342 (31%), Gaps = 49/342 (14%)
Query: 2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLITTVES 60
A + + + +V +C G P+ W KDGT L +E L+
Sbjct: 4 AAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGP--- 60
Query: 61 VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGE---------------- 104
L+++N + ED G Y+C+ V C ++ V + SG+
Sbjct: 61 -QRLQVLNASHEDSGAYSCRQRLTQRV-LCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTG 118
Query: 105 APKFTKP----LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160
AP +T+P K + A + + G PTPSI W + E ++
Sbjct: 119 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG-IKLRH 177
Query: 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQA 220
+ L + P D Y+ N FG L + +
Sbjct: 178 QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTL------DVLERSPHRPILQAGLPAN 231
Query: 221 LLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIE----------------TKDNVT 264
S V + P ++W K+ + SK T +
Sbjct: 232 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELE 291
Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV 306
L + T + G+Y N G + S + + AE E V
Sbjct: 292 VLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEELV 333
Score = 162 bits (410), Expect = 3e-45
Identities = 67/368 (18%), Positives = 105/368 (28%), Gaps = 64/368 (17%)
Query: 207 RVLEAPTI-VRPLQALLVPKDSTVTLEAEYT-GTPTPEVKWFKNGKEIVSKDIETKDNVT 264
R E P + L+ V L G P W K+G +V +
Sbjct: 3 RAAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSE-RVLVGPQ 61
Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQ--- 321
+L + + + +G Y R SV +T A + D E+ T
Sbjct: 62 RLQVLNASHEDSGAYSCRQRLTQRVLC-HFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAP 120
Query: 322 WFIHSEPV-----------------VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLC 364
++ E + G PTP ++W +G + + +
Sbjct: 121 YWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQW 180
Query: 365 KLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSP 424
L + V P + G Y+C N G TL V E+ A S
Sbjct: 181 SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERS-PHRPILQAGLPANQTAVLGSD 239
Query: 425 ATLKATVTGRPTPSICWYRGKE----EILPDNGHTMEFNPTTGECVLSISEATPQDEAVY 480
V P I W + E ++ PD + T G
Sbjct: 240 VEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGA---------------- 283
Query: 481 SVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTD 540
TD VL + +T + G+ TC A N G +A L
Sbjct: 284 ----------NTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV--------- 324
Query: 541 VMESPRFI 548
V+ + +
Sbjct: 325 VLPAEEEL 332
Score = 154 bits (391), Expect = 2e-42
Identities = 73/341 (21%), Positives = 111/341 (32%), Gaps = 53/341 (15%)
Query: 102 SGEAPKFTK-PLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPT 159
+ E P + ++ + L G P W + ++P +
Sbjct: 4 AAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV----- 58
Query: 160 TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPR----------VL 209
G L + A+ +D YS + T + V ++ D
Sbjct: 59 -GPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDT 117
Query: 210 EAPTIVRP----LQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVS----KDIETKD 261
AP RP + L VP +TV G PTP + W KNG+E I+ +
Sbjct: 118 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRH 177
Query: 262 NVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI------------------TVAEA 303
LV++ G Y V N+ G R + ++ + T
Sbjct: 178 QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLG 237
Query: 304 ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTP-MKEGKEVTIYQDTDG 362
V +V S QW H E P DGTP + K
Sbjct: 238 SDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGP--------DGTPYVTVLKTAGANTTDKE 289
Query: 363 LCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEE 403
L L++ V E+AG Y+C A N +G + +A L V EE
Sbjct: 290 LEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEE 330
Score = 117 bits (293), Expect = 5e-29
Identities = 47/259 (18%), Positives = 70/259 (27%), Gaps = 62/259 (23%)
Query: 329 VVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
G P W DGT + + V + +L + E++G YSC
Sbjct: 31 PPPGGGPMGPTVWVKDGTGLVPSERVLVGP-----QRLQVLNASHEDSGAYSCRQRLTQR 85
Query: 389 EAVAAATLAVEEKEESG---------------EAPKFTKP----LKPVIAEAQSPATLKA 429
+ + AP +T+P K + A + +
Sbjct: 86 VLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRC 145
Query: 430 TVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTET 489
G PTPSI W + E ++ + L + P D Y
Sbjct: 146 PAAGNPTPSISWLKNGREFRGEHRIGG-IKLRHQQWSLVMESVVPSDRGNY--------- 195
Query: 490 KIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIK 549
TC EN GS+ T TL +L S
Sbjct: 196 ------------------------TCVVENKFGSIRQTYTLDVLERSPH----RPILQAG 227
Query: 550 TPETAKVMDGQSVLFTAQV 568
P + G V F +V
Sbjct: 228 LPANQTAVLGSDVEFHCKV 246
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 164 bits (418), Expect = 1e-47
Identities = 49/198 (24%), Positives = 77/198 (38%), Gaps = 5/198 (2%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVE-SVSTL 64
PRF A F C+ G P P + W K G ++ +I + S S L
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVL 65
Query: 65 EIIN-PTKEDIGVYTCKATNIGGVATCSANLIVLEKEES-GEAPKFTKPLKPVIAEAQSP 122
I T D +Y C A+N G + S L VL +++ P + + E
Sbjct: 66 RIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRT 125
Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGH-TMEFNPTTGECVLSISEATPQDEAVYSVK 181
AT+ +G P P I W++ + N + ++ + L I ++ D+ Y
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECV 185
Query: 182 AVNTFGRAE-CRANLVLR 198
A N+ G ANL +R
Sbjct: 186 ATNSAGTRYSAPANLYVR 203
Score = 145 bits (367), Expect = 2e-40
Identities = 53/212 (25%), Positives = 88/212 (41%), Gaps = 13/212 (6%)
Query: 100 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 159
E P+FT+ + A+ TG P P I W + +++ +EF+
Sbjct: 1 ETGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDG 60
Query: 160 TGECVLSISEA-TPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPL 218
+G VL I TP+DEA+Y A N G L + + I + PTI
Sbjct: 61 SG-SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPR----GFPTIDMGP 115
Query: 219 QALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD------IETKDNVTKLVIKQTT 272
Q +V + T T+ +G P PE+ WFK+ + + + +++ L I+Q+
Sbjct: 116 QLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSE 175
Query: 273 KKTTGKYEIRVVNEAGEARTSGSVTITVAEAE 304
+ GKYE N AG ++ + V +
Sbjct: 176 ESDQGKYECVATNSAGTRYSA-PANLYVRGTK 206
Score = 135 bits (341), Expect = 7e-37
Identities = 47/240 (19%), Positives = 75/240 (31%), Gaps = 47/240 (19%)
Query: 299 TVAEA---ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVT 355
T +D S ASF TG P P + W+ G + +
Sbjct: 2 TGETPPRFTRTPVDQTGVSGGVASF-------ICQATGDPRPKIVWNKKGKKVSNQRFEV 54
Query: 356 IYQDTDGLCKLAISEV-FPENAGLYSCTAVNPVGEAVAAATLAVEEKEES-GEAPKFTKP 413
I D L I + P + +Y C A N VGE + L V +++ P
Sbjct: 55 IEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMG 114
Query: 414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGH-TMEFNPTTGECVLSISEA 472
+ + E AT+ +G P P I W++ + N + ++ + L I ++
Sbjct: 115 PQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQS 174
Query: 473 TPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS-VTCTATLS 531
D+ Y C A N AG+ + A L
Sbjct: 175 EESDQGKY---------------------------------ECVATNSAGTRYSAPANLY 201
Score = 130 bits (329), Expect = 3e-35
Identities = 42/212 (19%), Positives = 67/212 (31%), Gaps = 23/212 (10%)
Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNV 263
P R + + TG P P++ W K GK++ ++ +
Sbjct: 3 GETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62
Query: 264 TKLVIKQTTKKT-TGKYEIRVVNEAGEARTSGSVTITVAEAET--------VMMDVRVES 314
+ L I+ YE N GE S +T+ + VE
Sbjct: 63 SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVER 122
Query: 315 HPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQ--DTDGLCKLAISEVF 372
TA+ +G P P +TW D P+ + ++ + L I +
Sbjct: 123 TRTATML-------CAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSE 175
Query: 373 PENAGLYSCTAVNPVGEAV-AAATLAVEEKEE 403
+ G Y C A N G A A L V +
Sbjct: 176 ESDQGKYECVATNSAGTRYSAPANLYVRGTKH 207
Score = 96.0 bits (239), Expect = 7e-23
Identities = 33/168 (19%), Positives = 56/168 (33%), Gaps = 37/168 (22%)
Query: 402 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 461
E P+FT+ + A+ TG P P I W + +++ +EF+
Sbjct: 1 ETGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDG 60
Query: 462 TGECVLSISEA-TPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENV 520
+G VL I TP+DEA+Y C A N
Sbjct: 61 SG-SVLRIQPLRTPRDEAIY---------------------------------ECVASNN 86
Query: 521 AGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
G ++ + L++L E ++ P P+ V ++
Sbjct: 87 VGEISVSTRLTVLREDQIPRGF--PTIDMGPQLKVVERTRTATMLCAA 132
Score = 91.8 bits (228), Expect = 2e-21
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 4/100 (4%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE---HYLITTVESVS 62
P Q V + + A C G+P P +TW KD + + ES+
Sbjct: 108 FPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIG 167
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVA-TCSANLIVLEKEE 101
L+I + D G Y C ATN G + ANL V +
Sbjct: 168 ALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKH 207
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 161 bits (409), Expect = 5e-45
Identities = 47/323 (14%), Positives = 82/323 (25%), Gaps = 41/323 (12%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCK-------VEGHPLPTMTWQKDGTELHATEHYLITTV 58
+ + +P C P +TW K+ +
Sbjct: 18 CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMW 77
Query: 59 ESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAE 118
L ++ +ED G Y C N S L V E + P I
Sbjct: 78 AQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTD----AFLPFISYPQILT 133
Query: 119 AQSPATL-----KATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQ 173
+ L + I WY+ + DN + G L + + +
Sbjct: 134 LSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVR---GTTHLLVHDVALE 190
Query: 174 DEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLE- 232
D Y + + I K + P I+ PL+ + S +T+
Sbjct: 191 DAGYYRCVLTFAHEGQQYNITRSIE--LRIKKKKEETIPVIISPLKTISASLGSRLTIPC 248
Query: 233 --AEYTGTPTPEVKWFKNGKEIVSKDI----------------ETKDNVTKLVIKQTTKK 274
TGTP + W+ + L+ T++
Sbjct: 249 KVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTRE 308
Query: 275 TTG-KYEIRVVNEAGEARTSGSV 296
++ V N +V
Sbjct: 309 DLHMDFKCVVHNTLSFQTLRTTV 331
Score = 137 bits (346), Expect = 3e-36
Identities = 52/352 (14%), Positives = 92/352 (26%), Gaps = 68/352 (19%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEY-------TGTPTPEVKWFKNGKEI-VSKDIETKD 261
R + + V L + +P + W KN V + ET+
Sbjct: 17 SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRM 76
Query: 262 NVTK--LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV---AEAETVMMDVRVESHP 316
L + ++ +G Y N + + S + + A + +
Sbjct: 77 WAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLST 136
Query: 317 TASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENA 376
+ K + W D + + E + L + +V E+A
Sbjct: 137 SGVLV--CPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTT--HLLVHDVALEDA 192
Query: 377 GLYSCTAVNPVGEAVAAATLAVE---EKEESGEAPKFTKPLKPVIAEAQSPATLKATV-- 431
G Y C T ++E +K++ P PLK + A S T+ V
Sbjct: 193 GYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFL 252
Query: 432 -TGRPTPSICWYRGKEEILPD-----------NGHTMEFNPTTGECVLSISEATPQDE-A 478
TG P ++ W+ + + E N E L T +D
Sbjct: 253 GTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHM 312
Query: 479 VYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATL 530
+ C N T T+
Sbjct: 313 DF---------------------------------KCVVHNTLSFQTLRTTV 331
Score = 134 bits (339), Expect = 3e-35
Identities = 39/334 (11%), Positives = 89/334 (26%), Gaps = 42/334 (12%)
Query: 95 IVLEKEESGEAPKFTKPLKPVIAEAQSPATLK-------ATVTGRPTPSICWYRGKEEIL 147
+ + K P L+ + P ++ W++
Sbjct: 8 PAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSART 67
Query: 148 PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPR 207
G L + A +D Y N + L + + T P
Sbjct: 68 VPGEEETRMWAQDG--ALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPF 125
Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD--IETKDNVTK 265
+ + +LV D L +++W+K+ + + + T
Sbjct: 126 ISYPQILTLSTSGVLVCPD----LSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTH 181
Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMM----------DVRVESH 315
L++ + G Y + + + + +I + + +
Sbjct: 182 LLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLG 241
Query: 316 PTASFQWFIHSEPVVVTGKPTPLVTW----------SHDGTPMKEG--KEVTIYQDTDGL 363
+ + + TG P + W ++ G + EG +E + +
Sbjct: 242 SRLTI----PCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIE 297
Query: 364 CKLAISEVFPENAGL-YSCTAVNPVGEAVAAATL 396
L V E+ + + C N + T+
Sbjct: 298 VPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
Score = 122 bits (308), Expect = 5e-31
Identities = 34/277 (12%), Positives = 61/277 (22%), Gaps = 46/277 (16%)
Query: 308 MDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLA 367
+ + + + P +TW + + E L
Sbjct: 26 KREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQD-GALW 84
Query: 368 ISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATL 427
+ E++G Y CT N + L V E + P I + L
Sbjct: 85 LLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTD----AFLPFISYPQILTLSTSGVL 140
Query: 428 -----KATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 482
+ I WY+ + DN + G L + + +D Y
Sbjct: 141 VCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVR---GTTHLLVHDVALEDAGYY-- 195
Query: 483 KASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVM 542
C T S+ +
Sbjct: 196 -------------------------------RCVLTFAHEGQQYNITRSIELRIKKKKEE 224
Query: 543 ESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEIPLI 579
P I +T G + +V + +
Sbjct: 225 TIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTM 261
Score = 56.6 bits (136), Expect = 8e-09
Identities = 20/109 (18%), Positives = 31/109 (28%), Gaps = 17/109 (15%)
Query: 3 EVLAPRFIEKIQPVVSHQEQPALFTCKV---EGHPLPTMTWQKDGTELHATEHYLITTVE 59
E P I ++ + + CKV G PL TM W + + E
Sbjct: 223 EETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTE 282
Query: 60 S-------------VSTLEIINPTKEDIGV-YTCKATNIGGVATCSANL 94
L T+ED+ + + C N T +
Sbjct: 283 GPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
Score = 54.7 bits (131), Expect = 4e-08
Identities = 18/173 (10%), Positives = 35/173 (20%), Gaps = 48/173 (27%)
Query: 392 AAATLAVEEKEESGE-APKFTKPLKPVIAEAQSPATLK-------ATVTGRPTPSICWYR 443
TL + + K P L+ + P ++ W++
Sbjct: 2 DPFTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHK 61
Query: 444 GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS 503
G L + A +D Y
Sbjct: 62 NDSARTVPGEEETRMWAQDG--ALWLLPALQEDSGTY----------------------- 96
Query: 504 KITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKV 556
C N + + L + ++ FI P+ +
Sbjct: 97 ----------VCTTRNASYCDKMSIELRVFENTDAF-----LPFISYPQILTL 134
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 157 bits (399), Expect = 6e-44
Identities = 74/328 (22%), Positives = 126/328 (38%), Gaps = 45/328 (13%)
Query: 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA-TEHYLITTVES-VS 62
+AP F E+++ + + A CKV GHP P + W + G E+ A Y I +
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
L I + T +D VY +ATN GG + +A+L V + PK + + V A
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI-HLPKTLEGMGAVHALRGEV 121
Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182
++K +G+P P I W +G++ I + + + + ++ + +D Y V A
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR-SFTSLVFPNGVERKDAGFYVVCA 180
Query: 183 VNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPE 242
N FG + L + D P + P V+ +V L
Sbjct: 181 KNRFGIDQKTVELDVA-----DVP---DPPRGVKVSDV----SRDSVNLT---------- 218
Query: 243 VKW----FKNGKEIVSKDIETKDNVTKLVIKQTTKKTTG----------KYEIRV--VNE 286
W G +I + +E + ++ + T Y+ RV N+
Sbjct: 219 --WTEPASDGGSKITNYIVEKCATTAERWLRVGQARETRYTVINLFGKTSYQFRVIAENK 276
Query: 287 AGEARTSG-SVTITVAEAETVMMDVRVE 313
G ++ S S E +T M+ E
Sbjct: 277 FGLSKPSEPSEPTITKEDKTRAMNYDEE 304
Score = 154 bits (390), Expect = 1e-42
Identities = 52/201 (25%), Positives = 80/201 (39%), Gaps = 10/201 (4%)
Query: 103 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 162
AP F + L+ + QS ATL VTG P P + WYR +EI+ D G
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALL 222
L I+ T D VY V+A N G A+L + I P+ LE V
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVH------ 115
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGK 278
+ V+++ ++G P P + W K I + I T+ + + +K G
Sbjct: 116 ALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175
Query: 279 YEIRVVNEAGEARTSGSVTIT 299
Y + N G + + + +
Sbjct: 176 YVVCAKNRFGIDQKTVELDVA 196
Score = 134 bits (340), Expect = 1e-35
Identities = 49/225 (21%), Positives = 80/225 (35%), Gaps = 26/225 (11%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVT 264
AP L+ L V S TL + TG P P VKW++ GKEI++ E K
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV------MMDVRVESHPTA 318
+L+I T Y++R N+ G + S+ + V + M V
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122
Query: 319 SFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGL 378
S + + +GKP P++TW + + + + V ++AG
Sbjct: 123 SIK-------IPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175
Query: 379 YSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQS 423
Y A N G L V + + P +++
Sbjct: 176 YVVCAKNRFGIDQKTVELDVADVPDP--------PRGVKVSDVSR 212
Score = 124 bits (314), Expect = 4e-32
Identities = 53/242 (21%), Positives = 89/242 (36%), Gaps = 49/242 (20%)
Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMK-EGKEVTIYQDTDGLCKLA 367
++ V A+ VTG P P+V W G + +G + I + G +L
Sbjct: 13 NLNVRYQSNATLV-------CKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI 65
Query: 368 ISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATL 427
I+ V ++A +Y A N G A+L VE + PK + + V A ++
Sbjct: 66 IASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI-HLPKTLEGMGAVHALRGEVVSI 124
Query: 428 KATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASST 487
K +G+P P I W +G++ I + + +
Sbjct: 125 KIPFSGKPDPVITWQKGQDLIDNNGHYQV------------------------------- 153
Query: 488 ETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRF 547
I+T S++ + + R G A+N G T L +V DV + PR
Sbjct: 154 ---IVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL------DVADVPDPPRG 204
Query: 548 IK 549
+K
Sbjct: 205 VK 206
Score = 89.0 bits (221), Expect = 1e-19
Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 9/121 (7%)
Query: 2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESV 61
A++ P+ +E + V + + + G P P +TWQK + HY + S
Sbjct: 100 AKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSF 159
Query: 62 STLEIINPT-KEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ 120
++L N ++D G Y A N G+ + L V + + P +++
Sbjct: 160 TSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDP--------PRGVKVSDVS 211
Query: 121 S 121
Sbjct: 212 R 212
Score = 89.0 bits (221), Expect = 1e-19
Identities = 41/164 (25%), Positives = 57/164 (34%), Gaps = 37/164 (22%)
Query: 405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 464
AP F + L+ + QS ATL VTG P P + WYR +EI+ D G
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 465 CVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV 524
L I+ T D VY RA N GSV
Sbjct: 62 HQLIIASVTDDDATVY---------------------------------QVRATNQGGSV 88
Query: 525 TCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
+ TA+L + EV + P+ ++ + G+ V
Sbjct: 89 SGTASLEV----EVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF 128
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 158 bits (401), Expect = 3e-43
Identities = 64/311 (20%), Positives = 109/311 (35%), Gaps = 33/311 (10%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE-------HYLITTVE 59
P I+ + +++ C EG P+P +TW++ TE +
Sbjct: 2 PHIIQL-KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 60 SVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEA 119
S+L I + D G Y C+A + G S L + APKF +
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEY------APKFISNQTIYYSWE 114
Query: 120 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYS 179
+P + V P SI W R K + N ++ T + +L I+ + D Y+
Sbjct: 115 GNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYN 174
Query: 180 VKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDS-TVTLEAEYTGT 238
A N G L + + P+ ++ + + + + V+ +
Sbjct: 175 CTATNHIGTRFQEYIL-----------ALADVPSSPYGVKIIELSQTTAKVSFNKPDSHG 223
Query: 239 PTPEVKWFKNGKEIVS---KDIETKDNVTKLVIKQTTKKTTGKYEIRV--VNEAGEARTS 293
P + + KE+ S K + + T +V+ TT YEIRV VN G+ S
Sbjct: 224 GVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTT--YEIRVAAVNGKGQGDYS 281
Query: 294 GSVTITVAEAE 304
Sbjct: 282 KIEIFQTLPVR 292
Score = 134 bits (339), Expect = 9e-35
Identities = 48/322 (14%), Positives = 87/322 (27%), Gaps = 46/322 (14%)
Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTM-----EFNPTT 160
P + K TL G P P I W R + G E
Sbjct: 2 PHIIQL-KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQA 220
G L I + D Y +A + G + L + AP +
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD-----------IEYAPKFISNQTI 109
Query: 221 LLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVTKLVIKQTTKKT 275
+ + + + + P + W ++ + +K+ + L I T+
Sbjct: 110 YYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDND 169
Query: 276 TGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVE--SHPTASFQW----FIHSEPV 329
G+Y N G + +A+ + V++ S TA + P+
Sbjct: 170 FGRYNCTATNHIGTR--FQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPI 227
Query: 330 ---VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNP 386
V K W I + + ++ + P AVN
Sbjct: 228 HHYQVDVKEVASEIW-------------KIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNG 274
Query: 387 VGEAVAAATLAVEEKEESGEAP 408
G+ + + +P
Sbjct: 275 KGQGDYSKIEIFQTLPVREPSP 296
Score = 115 bits (289), Expect = 5e-28
Identities = 37/212 (17%), Positives = 69/212 (32%), Gaps = 20/212 (9%)
Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----------IETKD 261
P I++ + ++ VTL + G P PE+ W + + ++ +
Sbjct: 2 PHIIQL-KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 262 NVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA-EAETVMMDVRVESHPTASF 320
+ L IK +G+Y+ + G + S + I A + + +
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINI 120
Query: 321 QWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDG-LCKLAISEVFPENAGLY 379
V P + W D + + + G L I+ + G Y
Sbjct: 121 S-------CDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRY 173
Query: 380 SCTAVNPVGEAVAAATLAVEEKEESGEAPKFT 411
+CTA N +G LA+ + S K
Sbjct: 174 NCTATNHIGTRFQEYILALADVPSSPYGVKII 205
Score = 114 bits (288), Expect = 6e-28
Identities = 45/255 (17%), Positives = 74/255 (29%), Gaps = 58/255 (22%)
Query: 307 MMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQD------T 360
+ + + + G+P P +TW +
Sbjct: 7 LKNETTYENGQVTLV-------CDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 361 DGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAE 420
G L I +V ++G Y C A + +G + L +E APKF +
Sbjct: 60 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEY------APKFISNQTIYYSW 113
Query: 421 AQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVY 480
+P + V P SI W R K + N ++ T + +L I+ + D Y
Sbjct: 114 EGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRY 173
Query: 481 SVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTD 540
C A N G+ L + D
Sbjct: 174 ---------------------------------NCTATNHIGTRFQEYIL------ALAD 194
Query: 541 VMESPRFIKTPETAK 555
V SP +K E ++
Sbjct: 195 VPSSPYGVKIIELSQ 209
Score = 100 bits (251), Expect = 5e-23
Identities = 56/303 (18%), Positives = 102/303 (33%), Gaps = 47/303 (15%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA--TEHYLITTVESVST 63
AP+FI S + P +C V+ +P ++ W++D L A T + +
Sbjct: 100 APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI 159
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEA-QSP 122
LEI + D G Y C ATN G L + + S P I E Q+
Sbjct: 160 LEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSS--------PYGVKIIELSQTT 211
Query: 123 ATL--KATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 180
A + + P + +E+ + + + V ++ P V
Sbjct: 212 AKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVV--LNNLEPNTTYEIRV 269
Query: 181 KAVNTFGRAECRANLVLRKATTIDKPRVLEAPTI-VRPLQALLVPKDSTVTLEAEYTGTP 239
AVN G+ + + + T + P+I +P + L +
Sbjct: 270 AAVNGKGQGD--YSKIEIFQTLPVREP--SPPSIHGQPSS------GKSFKL------SI 313
Query: 240 TPE-----------VKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRV--VNE 286
T + VK+ KE + + + N ++++ YE+++ N
Sbjct: 314 TKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMG--YEVQITAANR 371
Query: 287 AGE 289
G
Sbjct: 372 LGY 374
Score = 78.3 bits (193), Expect = 1e-15
Identities = 26/169 (15%), Positives = 41/169 (24%), Gaps = 38/169 (22%)
Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467
P + K TL G P P I W R + G
Sbjct: 2 PHIIQL-KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGD------------- 47
Query: 468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCT 527
K+ ++ S L I + G C A + G +
Sbjct: 48 ---------------KSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKS 92
Query: 528 ATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEI 576
L + +P+FI +G + + V + I
Sbjct: 93 MYLD---------IEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASI 132
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 151 bits (383), Expect = 8e-43
Identities = 45/219 (20%), Positives = 79/219 (36%), Gaps = 20/219 (9%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE-HYLITTVESVSTL 64
P I K Q A F C G P P++ W+K+G ++ T+ Y + ++
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISI 65
Query: 65 EIINPTK--EDIGVYTCKATN-IGGVATCSANLIVLEKEES-GEAPKFTKPLKPVIAEAQ 120
I P + D Y C A N +G + A L + E +++ P T+ + E
Sbjct: 66 LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVG 125
Query: 121 SPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 180
+ G PTP+I W + + ++ N + + L I + +D+ Y
Sbjct: 126 HTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRY-----SLKDGFLQIENSREEDQGKYEC 180
Query: 181 KAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ 219
A N+ G +A + V +
Sbjct: 181 VAENSMGTEHSKATNL----------YVKVRRVGTKHHH 209
Score = 124 bits (312), Expect = 9e-33
Identities = 48/223 (21%), Positives = 71/223 (31%), Gaps = 35/223 (15%)
Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDN 262
P I+R Q V + G P P + W KNGK++ +E
Sbjct: 3 GAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG 62
Query: 263 VTKLVIKQTTKKT-TGKYEIRVVNEAGEARTSGSVTITVAEAETV----------MMDVR 311
++ L I+ YE N G+A S T+T+ E +
Sbjct: 63 ISILRIEPVRAGRDDAPYECVAENGVGDAV-SADATLTIYEGDKTPAGFPVITQGPGTRV 121
Query: 312 VESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEV 371
+E T G PTP + W + T + +D L I
Sbjct: 122 IEVGHTVLMT-------CKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGF----LQIENS 170
Query: 372 FPENAGLYSCTAVNPVGEAVA-AATLAVEEKEESGEAPKFTKP 413
E+ G Y C A N +G + A L V+ + TK
Sbjct: 171 REEDQGKYECVAENSMGTEHSKATNLYVKVR------RVGTKH 207
Score = 122 bits (308), Expect = 4e-32
Identities = 42/209 (20%), Positives = 72/209 (34%), Gaps = 9/209 (4%)
Query: 100 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 159
E P+ + + A+ G P PSI W + +++
Sbjct: 1 ETGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQP 60
Query: 160 TGECVLSISEAT-PQDEAVYSVKAVNTFGRA-ECRANLVLRKATTIDKPRVLEAPTIVRP 217
G +L I +D+A Y A N G A A L + P I +
Sbjct: 61 GGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTI----YEGDKTPAGFPVITQG 116
Query: 218 LQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEI-VSKDIETKDNVTKLVIKQTTKKTT 276
++ TV + + G PTP + W KN ++ +S + + L I+ + ++
Sbjct: 117 PGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKD-GFLQIENSREEDQ 175
Query: 277 GKYEIRVVNEAGEARTSGSVTITVAEAET 305
GKYE N G + + + V
Sbjct: 176 GKYECVAENSMGTEHSK-ATNLYVKVRRV 203
Score = 120 bits (302), Expect = 2e-31
Identities = 52/262 (19%), Positives = 81/262 (30%), Gaps = 60/262 (22%)
Query: 299 TVAEA---ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKE-GKEV 354
T A + V ASF G P P + W +G +
Sbjct: 2 TGAHPPEIIRKPQNQGVRVGGVASFY-------CAARGDPPPSIVWRKNGKKVSGTQSRY 54
Query: 355 TIYQDTDGLCKLAISEVF-PENAGLYSCTAVNPVGEAVAA-ATLAVEEKEES-GEAPKFT 411
T+ + G+ L I V + Y C A N VG+AV+A ATL + E +++ P T
Sbjct: 55 TVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVIT 114
Query: 412 KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISE 471
+ + E + G PTP+I W + + ++ N + + L I
Sbjct: 115 QGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRY-----SLKDGFLQIEN 169
Query: 472 ATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
+ +D+ Y C AEN G+ AT
Sbjct: 170 SREEDQGKY---------------------------------ECVAENSMGTEHSKAT-- 194
Query: 532 LLPESEVTDVMESPRFIKTPET 553
+ V K
Sbjct: 195 -----NLY-VKVRRVGTKHHHH 210
Score = 80.2 bits (198), Expect = 2e-17
Identities = 31/169 (18%), Positives = 51/169 (30%), Gaps = 37/169 (21%)
Query: 402 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 461
E P+ + + A+ G P PSI W + +++
Sbjct: 1 ETGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQP 60
Query: 462 TGECVLSISEAT-PQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENV 520
G +L I +D+A Y C AEN
Sbjct: 61 GGISILRIEPVRAGRDDAPY---------------------------------ECVAENG 87
Query: 521 AG-SVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
G +V+ ATL++ + P + P T + G +VL T +
Sbjct: 88 VGDAVSADATLTIYEGDK--TPAGFPVITQGPGTRVIEVGHTVLMTCKA 134
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 149 bits (378), Expect = 3e-42
Identities = 44/197 (22%), Positives = 66/197 (33%), Gaps = 16/197 (8%)
Query: 6 APRFIEKIQP--VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVST 63
P + + + + F+C+ G P P ++W ++G + E Y++ S +
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL--KGSNTE 59
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPA 123
L + N D G Y C+ATN G A L V P + E
Sbjct: 60 LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF------VQPHIIQLKNETTYENGQ-V 112
Query: 124 TLKATVTGRPTPSICWYRGKEEILPDNGHTM-----EFNPTTGECVLSISEATPQDEAVY 178
TL G P P I W R + G E G L I + D Y
Sbjct: 113 TLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRY 172
Query: 179 SVKAVNTFGRAECRANL 195
+A + G + L
Sbjct: 173 DCEAASRIGGHQKSMYL 189
Score = 124 bits (314), Expect = 3e-33
Identities = 41/206 (19%), Positives = 75/206 (36%), Gaps = 28/206 (13%)
Query: 105 APKFTKPLKP--VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 162
P + P K AE T +G P P+I W+R + I + + ++ +
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGS----N 57
Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALL 222
L++ D Y +A N G E +A L +V P I++ +
Sbjct: 58 TELTVRNIINSDGGPYVCRATNKAGEDEKQAFL-----------QVFVQPHIIQL-KNET 105
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----------IETKDNVTKLVIKQTT 272
++ VTL + G P PE+ W + + ++ + + L IK
Sbjct: 106 TYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVK 165
Query: 273 KKTTGKYEIRVVNEAGEARTSGSVTI 298
+G+Y+ + G + S + I
Sbjct: 166 LSDSGRYDCEAASRIGGHQKSMYLDI 191
Score = 120 bits (302), Expect = 1e-31
Identities = 40/228 (17%), Positives = 60/228 (26%), Gaps = 55/228 (24%)
Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAI 368
+ E +F +G P P ++W +G ++E ++ + +L +
Sbjct: 13 NATAERGEEMTFS-------CRASGSPEPAISWFRNGKLIEENEKYILKGSN---TELTV 62
Query: 369 SEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLK 428
+ + G Y C A N GE A L V P + E TL
Sbjct: 63 RNIINSDGGPYVCRATNKAGEDEKQAFLQVF------VQPHIIQLKNETTYENGQ-VTLV 115
Query: 429 ATVTGRPTPSICWYRGKEEILPDNGHTM-----EFNPTTGECVLSISEATPQDEAVYSVK 483
G P P I W R + G E G L I + D Y
Sbjct: 116 CDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRY--- 172
Query: 484 ASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
C A + G + L
Sbjct: 173 ------------------------------DCEAASRIGGHQKSMYLD 190
Score = 115 bits (290), Expect = 5e-30
Identities = 44/198 (22%), Positives = 77/198 (38%), Gaps = 16/198 (8%)
Query: 211 APTIVRPLQA--LLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEI-VSKDIETKDNVTKLV 267
P I P ++ + +T +G+P P + WF+NGK I ++ K + T+L
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELT 61
Query: 268 IKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSE 327
++ G Y R N+AGE + + V + + + +
Sbjct: 62 VRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTL------- 114
Query: 328 PVVVTGKPTPLVTW--SHDGTPMKEGKEVTIYQ----DTDGLCKLAISEVFPENAGLYSC 381
G+P P +TW + DG EG + + G L I +V ++G Y C
Sbjct: 115 VCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDC 174
Query: 382 TAVNPVGEAVAAATLAVE 399
A + +G + L +E
Sbjct: 175 EAASRIGGHQKSMYLDIE 192
Score = 89.1 bits (221), Expect = 1e-20
Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
Query: 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE-------HYLIT 56
V I +++ +++ C EG P+P +TW++ TE +
Sbjct: 92 VFVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVK 151
Query: 57 TVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
S+L I + D G Y C+A + G S L +
Sbjct: 152 GQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191
Score = 81.0 bits (200), Expect = 8e-18
Identities = 28/164 (17%), Positives = 43/164 (26%), Gaps = 49/164 (29%)
Query: 407 APKFTKPLKP--VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 464
P + P K AE T +G P P+I W+R + I + + ++ +
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGS----N 57
Query: 465 CVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV 524
L++ D Y CRA N AG
Sbjct: 58 TELTVRNIINSDGGPY---------------------------------VCRATNKAGED 84
Query: 525 TCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
A L V P I+ + + V
Sbjct: 85 EKQAFL---------QVFVQPHIIQ-LKNETTYENGQVTLVCDA 118
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 152 bits (385), Expect = 7e-42
Identities = 52/323 (16%), Positives = 92/323 (28%), Gaps = 35/323 (10%)
Query: 4 VLAPRFIEKIQP--VVSHQEQPALFTCKVEGHP-LPTMTWQKDGTELHATEHYLITTVES 60
+ A + E+ + +VS + + C + + T+TW KD ++ + +
Sbjct: 1 LEADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH 60
Query: 61 VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ 120
L + ED G Y C N + +E E + + +
Sbjct: 61 KEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPN--LCYNAQAIFKQKLPVA 118
Query: 121 SPATLK------ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 174
L P + WY+ + +L DN H L + +
Sbjct: 119 GDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDR-----LIVMNVAEKH 173
Query: 175 EAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPL-QALLVPKDSTVTLEA 233
Y+ A T+ + V+ + P IV P + + V S + L
Sbjct: 174 RGNYTCHASYTYLGKQYPITRVIE--FITLEENKPTRPVIVSPANETMEVDLGSQIQLIC 231
Query: 234 EYTGTPTPEVKWFKNGKEIVSKD---------------IETKDNVTKLVIKQTTKK-TTG 277
TG + W NG I D +T L I + +
Sbjct: 232 NVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKH 291
Query: 278 KYEIRVVNEAGEARTSGSVTITV 300
+ N G + V
Sbjct: 292 PFTCFAKNTHGIDAAYIQLIYPV 314
Score = 129 bits (326), Expect = 1e-33
Identities = 52/338 (15%), Positives = 85/338 (25%), Gaps = 44/338 (13%)
Query: 209 LEAPTIV--RPLQALLVPKDSTVTLEAEYTGTPTP-EVKWFKNGKEI---VSKDIETKDN 262
LEA L+ + + W+K+ + + +
Sbjct: 1 LEADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH 60
Query: 263 VTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA-----ETVMMDVRVESHPT 317
KL + +G Y V N + R S E + ++
Sbjct: 61 KEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGD 120
Query: 318 ASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAG 377
+ E P + W D P+ +L + V ++ G
Sbjct: 121 GGLVCP-YMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD----RLIVMNVAEKHRG 175
Query: 378 LYSCTAVNPVGEAVAAATLAVE---EKEESGEAPKFTKPLKPVI-AEAQSPATLKATVTG 433
Y+C A T +E +E P P + + S L VTG
Sbjct: 176 NYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTG 235
Query: 434 RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT 493
+ + W I D+ E +
Sbjct: 236 QLSDIAYWKWNGSVIDEDDPVLGEDYYSV-----------------------ENPANKRR 272
Query: 494 DGNRSVLLISKIT-RDQIGDVTCRAENVAGSVTCTATL 530
+VL IS+I R TC A+N G L
Sbjct: 273 STLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 310
Score = 126 bits (318), Expect = 1e-32
Identities = 44/315 (13%), Positives = 92/315 (29%), Gaps = 28/315 (8%)
Query: 104 EAPKFTKPLKP--VIAEAQSPATLKATVTGRPTP-SICWYR--GKEEILPDNGHTMEFNP 158
EA K + + +++ A + +I WY+ K + + + +
Sbjct: 2 EADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH- 60
Query: 159 TTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANL-VLRKATTIDKPRVLEAPTIVRP 217
+ L A +D Y N+ + + + + +
Sbjct: 61 ---KEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPV 117
Query: 218 LQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTG 277
+ + E P+++W+K+ K ++ +I +L++ +K G
Sbjct: 118 AGDGGLVCPYMEFFKNE--NNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRG 175
Query: 278 KYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVV----VTG 333
Y + + I E V P + VTG
Sbjct: 176 NYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTG 235
Query: 334 KPTPLVTWSHDGTPMKEGKEVTIYQ-----------DTDGLCKLAISEVFPEN-AGLYSC 381
+ + + W +G+ + E V + + L ISE+ ++C
Sbjct: 236 QLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTC 295
Query: 382 TAVNPVGEAVAAATL 396
A N G A L
Sbjct: 296 FAKNTHGIDAAYIQL 310
Score = 96.3 bits (239), Expect = 4e-22
Identities = 34/248 (13%), Positives = 60/248 (24%), Gaps = 52/248 (20%)
Query: 330 VVTGKPTPLVTWSHDGT--PMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPV 387
+ + +TW D + P+ + I+Q + L E++G Y C N
Sbjct: 29 LNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLW---FVPAKVEDSGHYYCVVRNSS 85
Query: 388 GEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLK------ATVTGRPTPSICW 441
+ E E + + + L P + W
Sbjct: 86 YCLRIKISAKFVENEPN--LCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQW 143
Query: 442 YRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL 501
Y+ + +L DN H L + + Y
Sbjct: 144 YKDCKPLLLDNIHFSGVKDR-----LIVMNVAEKHRGNY--------------------- 177
Query: 502 ISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIK-TPETAKVMDGQ 560
TC A T + + + P + ET +V G
Sbjct: 178 ------------TCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGS 225
Query: 561 SVLFTAQV 568
+ V
Sbjct: 226 QIQLICNV 233
Score = 46.3 bits (109), Expect = 1e-05
Identities = 15/165 (9%), Positives = 35/165 (21%), Gaps = 47/165 (28%)
Query: 406 EAPKFTKPLKP--VIAEAQSPATLKATVTGRPTP-SICWYR--GKEEILPDNGHTMEFNP 460
EA K + + +++ A + +I WY+ K + + + +
Sbjct: 2 EADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH- 60
Query: 461 TTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENV 520
+ L A +D Y C N
Sbjct: 61 ---KEKLWFVPAKVEDSGHY---------------------------------YCVVRNS 84
Query: 521 AGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFT 565
+ + + + F + +
Sbjct: 85 SYCLRIKISAKFVENEPNLCYNAQAIFKQK-----LPVAGDGGLV 124
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 148 bits (374), Expect = 8e-42
Identities = 44/193 (22%), Positives = 75/193 (38%), Gaps = 11/193 (5%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
F E + P Q + A C+V P P ++W E+ + + + L+
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQ 60
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ--SPA 123
I+N K D G+Y C+ ++IV+ P + P K A A+
Sbjct: 61 ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN----VPPAISMPQKSFNATAERGEEM 116
Query: 124 TLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAV 183
T +G P P+I W+R + I + + ++ + T L++ D Y +A
Sbjct: 117 TFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE----LTVRNIINSDGGPYVCRAT 172
Query: 184 NTFGRAECRANLV 196
N G E +A L
Sbjct: 173 NKAGEDEKQAFLQ 185
Score = 121 bits (304), Expect = 6e-32
Identities = 37/197 (18%), Positives = 71/197 (36%), Gaps = 11/197 (5%)
Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 164
F + + P + A + V+ P P++ W EE+ + +
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN---N 58
Query: 165 LSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVP 224
L I DE +Y + ++++ V A ++ +
Sbjct: 59 LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN-------VPPAISMPQKSFNATAE 111
Query: 225 KDSTVTLEAEYTGTPTPEVKWFKNGKEIV-SKDIETKDNVTKLVIKQTTKKTTGKYEIRV 283
+ +T +G+P P + WF+NGK I ++ K + T+L ++ G Y R
Sbjct: 112 RGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRA 171
Query: 284 VNEAGEARTSGSVTITV 300
N+AGE + + V
Sbjct: 172 TNKAGEDEKQAFLQVFV 188
Score = 119 bits (301), Expect = 2e-31
Identities = 35/198 (17%), Positives = 64/198 (32%), Gaps = 17/198 (8%)
Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEI--VSKDIETKDNVTKLVI 268
T + + + + +P P V W + +E+ +S + L I
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI 61
Query: 269 KQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMM-----DVRVESHPTASFQWF 323
K G Y EA + + V + M + E +F
Sbjct: 62 LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTF--- 118
Query: 324 IHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTA 383
+G P P ++W +G ++E ++ + +L + + + G Y C A
Sbjct: 119 ----SCRASGSPEPAISWFRNGKLIEENEKYILKGSN---TELTVRNIINSDGGPYVCRA 171
Query: 384 VNPVGEAVAAATLAVEEK 401
N GE A L V +
Sbjct: 172 TNKAGEDEKQAFLQVFVQ 189
Score = 114 bits (286), Expect = 2e-29
Identities = 36/204 (17%), Positives = 60/204 (29%), Gaps = 45/204 (22%)
Query: 330 VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
V+ P P V+W + + + + L I + + G+Y C
Sbjct: 25 RVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN--NLQILNINKSDEGIYRCEGRVEARG 82
Query: 390 AVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQ--SPATLKATVTGRPTPSICWYRGKEE 447
+ + V P + P K A A+ T +G P P+I W+R +
Sbjct: 83 EIDFRDIIVIVNV----PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKL 138
Query: 448 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITR 507
I + + ++ + T L++ D Y
Sbjct: 139 IEENEKYILKGSNTE----LTVRNIINSDGGPY--------------------------- 167
Query: 508 DQIGDVTCRAENVAGSVTCTATLS 531
CRA N AG A L
Sbjct: 168 ------VCRATNKAGEDEKQAFLQ 185
Score = 92.2 bits (229), Expect = 9e-22
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
A +K + + + F+C+ G P P ++W ++G + E Y++ S + L
Sbjct: 98 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK--GSNTELT 155
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
+ N D G Y C+ATN G A L V +
Sbjct: 156 VRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 189
Score = 72.9 bits (179), Expect = 4e-15
Identities = 20/162 (12%), Positives = 41/162 (25%), Gaps = 41/162 (25%)
Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466
F + + P + A + V+ P P++ W EE+ + +
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN---N 58
Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC 526
L I DE +Y C A
Sbjct: 59 LQILNINKSDEGIY---------------------------------RCEGRVEARGEID 85
Query: 527 TATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
+ + + +V + + A G+ + F+ +
Sbjct: 86 FRDIIV-----IVNVPPAISMPQKSFNATAERGEEMTFSCRA 122
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 147 bits (373), Expect = 1e-41
Identities = 36/193 (18%), Positives = 68/193 (35%), Gaps = 10/193 (5%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
+ + V + FTC G P + G ++ +T+ ++ S L
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 61
Query: 66 IINPTKEDIGVYTCKATN-IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPAT 124
I N ED G+Y C+AT+ G + L + +K F + + P + A
Sbjct: 62 IYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQK------LTFREVVSPQEFKQGEDAE 115
Query: 125 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
+ V+ P P++ W EE+ + + L I DE +Y +
Sbjct: 116 VVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN---LQILNINKSDEGIYRCEGRV 172
Query: 185 TFGRAECRANLVL 197
++++
Sbjct: 173 EARGEIDFRDIIV 185
Score = 126 bits (319), Expect = 5e-34
Identities = 30/199 (15%), Positives = 58/199 (29%), Gaps = 16/199 (8%)
Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 164
+ T L V T G P + E+I+ ++
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEG--VRSR 59
Query: 165 LSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVP 224
L+I A +D +Y +A + G+ + ++ + + T +
Sbjct: 60 LTIYNANIEDAGIYRCQATDAKGQTQEATVVL----------EIYQKLTFREVVSPQEFK 109
Query: 225 KDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEI 281
+ + + +P P V W + +E+ + N L I K G Y
Sbjct: 110 QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN-LQILNINKSDEGIYRC 168
Query: 282 RVVNEAGEARTSGSVTITV 300
EA + + V
Sbjct: 169 EGRVEARGEIDFRDIIVIV 187
Score = 120 bits (302), Expect = 9e-32
Identities = 34/226 (15%), Positives = 66/226 (29%), Gaps = 51/226 (22%)
Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAI 368
V + + F G+P + ++ G + + V + ++ +L I
Sbjct: 11 KVELSVGESKFF-------TCTAIGEPESIDWYNPQGEKIISTQRVVVQKE-GVRSRLTI 62
Query: 369 SEVFPENAGLYSCTAVNPVGEAV-AAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATL 427
E+AG+Y C A + G+ A L + +K F + + P + A +
Sbjct: 63 YNANIEDAGIYRCQATDAKGQTQEATVVLEIYQK------LTFREVVSPQEFKQGEDAEV 116
Query: 428 KATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASST 487
V+ P P++ W EE+ + + L I DE +Y
Sbjct: 117 VCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN---LQILNINKSDEGIY------- 166
Query: 488 ETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533
C A + ++
Sbjct: 167 --------------------------RCEGRVEARGEIDFRDIIVI 186
Score = 119 bits (300), Expect = 2e-31
Identities = 25/195 (12%), Positives = 61/195 (31%), Gaps = 16/195 (8%)
Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLV 267
+ L + + + G P + G++I+S ++ + ++L
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 61
Query: 268 IKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA---ETVMMDVRVESHPTASFQWFI 324
I + G Y + + G+ + + +V + + + V+ + A
Sbjct: 62 IYNANIEDAGIYRCQATDAKGQTQEA-TVVLEIYQKLTFREVVSPQEFKQGEDAEV---- 116
Query: 325 HSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAV 384
V+ P P V+W + + + + L I + + G+Y C
Sbjct: 117 ---VCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN--NLQILNINKSDEGIYRCEGR 171
Query: 385 NPVGEAVAAATLAVE 399
+ + V
Sbjct: 172 VEARGEIDFRDIIVI 186
Score = 88.7 bits (220), Expect = 2e-20
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
F E + P Q + A C+V P P ++W E+ + + + L+
Sbjct: 96 KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQ 154
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVL 97
I+N K D G+Y C+ ++IV+
Sbjct: 155 ILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 186
Score = 81.8 bits (202), Expect = 4e-18
Identities = 21/163 (12%), Positives = 38/163 (23%), Gaps = 45/163 (27%)
Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466
+ T L V T G P + E+I+ ++
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEG--VRSR 59
Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV-T 525
L+I A +D +Y C+A + G
Sbjct: 60 LTIYNANIEDAGIY---------------------------------RCQATDAKGQTQE 86
Query: 526 CTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
T L + + F + + G+ +V
Sbjct: 87 ATVVLE---------IYQKLTFREVVSPQEFKQGEDAEVVCRV 120
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 147 bits (373), Expect = 2e-41
Identities = 26/196 (13%), Positives = 55/196 (28%), Gaps = 17/196 (8%)
Query: 16 VVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDI 74
+ + V + W +G+ + ++ L+I PT D
Sbjct: 12 KIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDK 71
Query: 75 GVYTCKATNIGGVATCSANLIVLEKE---------------ESGEAPKFTKPLKPVIAEA 119
G Y + + + +L + E A V +
Sbjct: 72 GKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQE 131
Query: 120 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYS 179
L V G P P + W + ++ + + ++F +I+ + D Y
Sbjct: 132 GKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEA-GRTAYFTINGVSTADSGKYG 190
Query: 180 VKAVNTFGRAECRANL 195
+ N +G +
Sbjct: 191 LVVKNKYGSETSDFTV 206
Score = 137 bits (346), Expect = 2e-37
Identities = 38/254 (14%), Positives = 65/254 (25%), Gaps = 60/254 (23%)
Query: 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIY 357
A + + E S V V WSH+G+ ++ V
Sbjct: 3 SIALSATDLKIQSTAEGIQLYS---------FVTYYVEDLKVNWSHNGSAIRYSDRVKTG 53
Query: 358 QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKE--------------- 402
L I+E P + G Y + L+ + +
Sbjct: 54 VT-GEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIA 112
Query: 403 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 462
E A V + L V G P P + W + ++ + + ++F
Sbjct: 113 EKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEA-G 171
Query: 463 GECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAG 522
+I+ + D Y +N G
Sbjct: 172 RTAYFTINGVSTADSGKY---------------------------------GLVVKNKYG 198
Query: 523 SVTCTATLS-LLPE 535
S T T+S +PE
Sbjct: 199 SETSDFTVSVFIPE 212
Score = 134 bits (339), Expect = 1e-36
Identities = 30/185 (16%), Positives = 55/185 (29%), Gaps = 18/185 (9%)
Query: 236 TGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART 292
+V W NG I D L I + T GKY + + + +
Sbjct: 28 YYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQK 87
Query: 293 SGSVTITV-----AEAETVMMDVRVESHPTASFQWFIHSEPVV----------VTGKPTP 337
+ ++ AE + + E + + V G P P
Sbjct: 88 TVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPP 147
Query: 338 LVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLA 397
V+W + + + + + I+ V ++G Y N G + T++
Sbjct: 148 EVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 207
Query: 398 VEEKE 402
V E
Sbjct: 208 VFIPE 212
Score = 126 bits (318), Expect = 1e-33
Identities = 31/188 (16%), Positives = 58/188 (30%), Gaps = 16/188 (8%)
Query: 129 VTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGR 188
+ W I + + L I+E TP D+ Y ++ +
Sbjct: 27 TYYVEDLKVNWSHNGSAIRYSDRVKTGVTG--EQIWLQINEPTPNDKGKYVMELFDGKTG 84
Query: 189 AECRANLV----------LRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT 238
+ +L ++ A + + + + + L G
Sbjct: 85 HQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGD 144
Query: 239 PTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSG 294
P PEV W KN K + D I + +GKY + V N+ G +
Sbjct: 145 PPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDF 204
Query: 295 SVTITVAE 302
+V++ + E
Sbjct: 205 TVSVFIPE 212
Score = 95.7 bits (238), Expect = 9e-23
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 2/102 (1%)
Query: 1 MAEVLAPRFIEKIQPVVSHQE-QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVE 59
+AE R + + VV+ QE + TC V G P P ++W K+ L T+H +
Sbjct: 111 IAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEA 170
Query: 60 S-VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKE 100
+ I + D G Y N G T + V E
Sbjct: 171 GRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIPE 212
Score = 63.7 bits (155), Expect = 9e-12
Identities = 17/150 (11%), Positives = 34/150 (22%), Gaps = 47/150 (31%)
Query: 431 VTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK 490
+ W I + + L I+E TP D+ Y
Sbjct: 27 TYYVEDLKVNWSHNGSAIRYSDRVKTGVTG--EQIWLQINEPTPNDKGKY---------- 74
Query: 491 IMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS------------LLPESEV 538
+ T LS L ++ +
Sbjct: 75 -----------------------VMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAI 111
Query: 539 TDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
+ + P+ + +G+++ T V
Sbjct: 112 AEKNRARVLGGLPDVVTIQEGKALNLTCNV 141
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 146 bits (369), Expect = 6e-41
Identities = 37/207 (17%), Positives = 70/207 (33%), Gaps = 22/207 (10%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLITTVES--VST 63
F + V ++ F + E + + + E+ Y + + +
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKE-------------ESGEAPKFTK 110
+ + ED G YT + + + L+ + + P F +
Sbjct: 63 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 122
Query: 111 PLKPVIAEAQSPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISE 169
L + + LK V + I WY+ + EI D H + G C L I+E
Sbjct: 123 YLSWEVTG-ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK----DGICTLLITE 177
Query: 170 ATPQDEAVYSVKAVNTFGRAECRANLV 196
+ +D +Y V + G+ + R LV
Sbjct: 178 FSKKDAGIYEVILKDDRGKDKSRLKLV 204
Score = 136 bits (343), Expect = 3e-37
Identities = 35/204 (17%), Positives = 72/204 (35%), Gaps = 12/204 (5%)
Query: 106 PKFTKPLKPVIAEAQSPATLKA-TVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 164
FTK V + + + ++EI + M + TG
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62
Query: 165 LSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPR--------VLEAPTIVR 216
+ + + +DE Y+ + + LV + K + P V
Sbjct: 63 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 122
Query: 217 PLQALLVPKDSTVTLEAEYTGTPTP-EVKWFKNGKEIVSKD-IETKDNVTKLVIKQTTKK 274
L V + V L+ + + W+K+ +EI + + KD + L+I + +KK
Sbjct: 123 YLSW-EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKK 181
Query: 275 TTGKYEIRVVNEAGEARTSGSVTI 298
G YE+ + ++ G+ ++ +
Sbjct: 182 DAGIYEVILKDDRGKDKSRLKLVD 205
Score = 121 bits (306), Expect = 5e-32
Identities = 30/217 (13%), Positives = 61/217 (28%), Gaps = 53/217 (24%)
Query: 330 VVTGKPTPLVTWSHDGTPMKEGKEVTI-YQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
V + + + EG + + G+ ++ + ++ E+ G Y+ +
Sbjct: 26 AEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKA 85
Query: 389 EAVAAATLAVEEKE-------------ESGEAPKFTKPLKPVIAEAQSPATLKATVTG-R 434
+ L + + + P F + L + + LK V +
Sbjct: 86 TNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTG-ECNVLLKCKVANIK 144
Query: 435 PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD 494
I WY+ + EI D H + G C L I+E + +D +Y
Sbjct: 145 KETHIVWYKDEREISVDEKHDFK----DGICTLLITEFSKKDAGIY-------------- 186
Query: 495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
++ G L
Sbjct: 187 -------------------EVILKDDRGKDKSRLKLV 204
Score = 119 bits (299), Expect = 4e-31
Identities = 29/207 (14%), Positives = 69/207 (33%), Gaps = 22/207 (10%)
Query: 212 PTIVRPLQALLVPKDSTVTLEAE-YTGTPTPEVKWFKNGKEIVSKD-----IETKDNVTK 265
+ A+ + + V + + +V + N KEI I+ + +
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62
Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIH 325
+ +++ + G Y ++ + ++ + V + + + + F+
Sbjct: 63 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 122
Query: 326 SEPVVVT-------------GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVF 372
VT K + W D + ++ + DG+C L I+E
Sbjct: 123 YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEK---HDFKDGICTLLITEFS 179
Query: 373 PENAGLYSCTAVNPVGEAVAAATLAVE 399
++AG+Y + G+ + L E
Sbjct: 180 KKDAGIYEVILKDDRGKDKSRLKLVDE 206
Score = 86.5 bits (214), Expect = 1e-19
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 4/92 (4%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTM-TWQKDGTELHATEHYLITTVESVSTL 64
P F+E + V+ E L CKV T W KD E+ E + + TL
Sbjct: 117 GPHFVEYLSWEVT-GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD--GICTL 173
Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
I +K+D G+Y + G L+
Sbjct: 174 LITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205
Score = 72.7 bits (178), Expect = 8e-15
Identities = 24/172 (13%), Positives = 47/172 (27%), Gaps = 45/172 (26%)
Query: 408 PKFTKPLKPVIAEAQSPATLKA-TVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466
FTK V + + + ++EI + M + TG
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62
Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC 526
+ + + +DE Y T + ++ +
Sbjct: 63 MFMEKLQDEDEGTY---------------------------------TFQLQDGKATNHS 89
Query: 527 TATL------SLLPESEVTD----VMESPRFIKTPETAKVMDGQSVLFTAQV 568
T L L E+E + P F++ + +V +VL +V
Sbjct: 90 TVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE-YLSWEVTGECNVLLKCKV 140
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 145 bits (367), Expect = 9e-41
Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 13/189 (6%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
AP ++ V + E+ A F C VE +P P ++W ++ + + + E+ L
Sbjct: 7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTR-YSIRENGQLLT 65
Query: 66 IINPTKEDIGVYTCKATN-IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPAT 124
I++ D G+Y C A N +GG L V K PK T+P V A
Sbjct: 66 ILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMK------PKITRPPINVKIIEGLKAV 119
Query: 125 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
L T G P PS+ W +G + ++ + + + L I +D Y A N
Sbjct: 120 LPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGS-----LRIHNVQKEDAGQYRCVAKN 174
Query: 185 TFGRAECRA 193
+ G A +
Sbjct: 175 SLGTAYSKL 183
Score = 131 bits (332), Expect = 9e-36
Identities = 46/200 (23%), Positives = 71/200 (35%), Gaps = 18/200 (9%)
Query: 206 PRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD--IETKDNV 263
++ +AP I PL+ + + T P PE+ W +N I D ++N
Sbjct: 2 EKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG 61
Query: 264 TKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA---ETVMMDVRVESHPTASF 320
L I G Y N G A S + V ++V++ A
Sbjct: 62 QLLTILSVEDSDDGIYCCTANNGVGGAVES-CGALQVKMKPKITRPPINVKIIEGLKAVL 120
Query: 321 QWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYS 380
G P P V+W + ++E + + + L I V E+AG Y
Sbjct: 121 P-------CTTMGNPKPSVSWIKGDSALRENSRIAVLESGS----LRIHNVQKEDAGQYR 169
Query: 381 CTAVNPVGEAVAA-ATLAVE 399
C A N +G A + L VE
Sbjct: 170 CVAKNSLGTAYSKLVKLEVE 189
Score = 119 bits (300), Expect = 2e-31
Identities = 49/202 (24%), Positives = 71/202 (35%), Gaps = 16/202 (7%)
Query: 100 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 159
E+ +AP T PL+ V A + AT V P P I W R K I +
Sbjct: 2 EKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTR-YSIREN 60
Query: 160 TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ 219
+L+I D+ +Y A N G A + +V P I RP
Sbjct: 61 GQ--LLTILSVEDSDDGIYCCTANNGVGGAVESCGAL----------QVKMKPKITRPPI 108
Query: 220 ALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-IETKDNVTKLVIKQTTKKTTGK 278
+ + + L G P P V W K + I ++ + L I K+ G+
Sbjct: 109 NVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGS-LRIHNVQKEDAGQ 167
Query: 279 YEIRVVNEAGEARTSGSVTITV 300
Y N G A + V + V
Sbjct: 168 YRCVAKNSLGTAYSK-LVKLEV 188
Score = 111 bits (279), Expect = 2e-28
Identities = 44/201 (21%), Positives = 67/201 (33%), Gaps = 47/201 (23%)
Query: 330 VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
V P P ++W+ + +K ++ L L I V + G+Y CTA N VG
Sbjct: 30 AVESYPQPEISWTRNKILIKLFDTRYSIRENGQL--LTILSVEDSDDGIYCCTANNGVGG 87
Query: 390 AV-AAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEI 448
AV + L V+ K PK T+P V A L T G P PS+ W +G +
Sbjct: 88 AVESCGALQVKMK------PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSAL 141
Query: 449 LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRD 508
++ + + + L I +D Y
Sbjct: 142 RENSRIAVLESGS-----LRIHNVQKEDAGQY---------------------------- 168
Query: 509 QIGDVTCRAENVAGSVTCTAT 529
C A+N G+
Sbjct: 169 -----RCVAKNSLGTAYSKLV 184
Score = 77.1 bits (190), Expect = 2e-16
Identities = 33/168 (19%), Positives = 49/168 (29%), Gaps = 46/168 (27%)
Query: 402 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 461
E+ +AP T PL+ V A + AT V P P I W R K I +
Sbjct: 2 EKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTR-YSIREN 60
Query: 462 TGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVA 521
+L+I D+ +Y C A N
Sbjct: 61 GQ--LLTILSVEDSDDGIY---------------------------------CCTANNGV 85
Query: 522 G-SVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
G +V L V P+ + P K+++G +
Sbjct: 86 GGAVESCGALQ---------VKMKPKITRPPINVKIIEGLKAVLPCTT 124
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 142 bits (360), Expect = 4e-39
Identities = 46/245 (18%), Positives = 75/245 (30%), Gaps = 31/245 (12%)
Query: 3 EVLAPRFI--EKIQP--VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTV 58
+ AP + E++ + F C G+P P+++W K+G E +
Sbjct: 8 DTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKL 67
Query: 59 E-SVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIA 117
+L + + D G YTC N G + L VLE+ A
Sbjct: 68 RHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPH-RPILQAGLPANQTA 126
Query: 118 EAQSPATLKATVTGRPTPSICWYRGKE----EILPDNGHTMEFNPT------TGECVLSI 167
S V P I W + E ++ PD + + + L +
Sbjct: 127 VLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRL 186
Query: 168 SEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDS 227
+ + +D Y +A N G AE L V LV D
Sbjct: 187 ANVSERDGGEYLCRATNFIGVAEKAFWL-----------SVHGPRAAEEE----LVEADE 231
Query: 228 TVTLE 232
++
Sbjct: 232 AGSVH 236
Score = 121 bits (306), Expect = 1e-31
Identities = 54/234 (23%), Positives = 78/234 (33%), Gaps = 40/234 (17%)
Query: 210 EAPTIVRPL----QALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVS----KDIETKD 261
AP RP + L VP +TV G PTP + W KNG+E I+ +
Sbjct: 10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRH 69
Query: 262 NVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI------------------TVAEA 303
LV++ G Y V N+ G R + ++ + T
Sbjct: 70 QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLG 129
Query: 304 ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGL 363
V +V S QW H E P DGTP + I + +
Sbjct: 130 SDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGP--------DGTPYVTVLKSWISESVEAD 181
Query: 364 CKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPV 417
+L ++ V + G Y C A N +G A A L+V + L
Sbjct: 182 VRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVH------GPRAAEEELVEA 229
Score = 118 bits (296), Expect = 2e-30
Identities = 43/265 (16%), Positives = 68/265 (25%), Gaps = 62/265 (23%)
Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAI 368
+ V + T F+ G PTP ++W +G + + + L +
Sbjct: 24 LLAVPAANTVRFR-------CPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVM 76
Query: 369 SEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLK 428
V P + G Y+C N G TL V E+ A S
Sbjct: 77 ESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPH-RPILQAGLPANQTAVLGSDVEFH 135
Query: 429 ATVTGRPTPSICWYRGKE----EILPDNGHTMEFNPT------TGECVLSISEATPQDEA 478
V P I W + E ++ PD + + + L ++ + +D
Sbjct: 136 CKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGG 195
Query: 479 VYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEV 538
Y CRA N G L
Sbjct: 196 EY---------------------------------LCRATNFIGVAEKAFWL-------- 214
Query: 539 TDVMESPRFIKTPETAKVMDGQSVL 563
V E + + SV
Sbjct: 215 -SVHGPRAA--EEELVEADEAGSVH 236
Score = 110 bits (275), Expect = 2e-27
Identities = 40/230 (17%), Positives = 72/230 (31%), Gaps = 26/230 (11%)
Query: 104 EAPKFTKPL----KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 159
AP +T+P K + A + + G PTPSI W + E ++
Sbjct: 10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRH 69
Query: 160 TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ 219
L + P D Y+ N FG L + + +P
Sbjct: 70 QQ-WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV-LERSPHRP-----ILQAGLPA 122
Query: 220 ALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSK---------------DIETKDNVT 264
S V + P ++W K+ + SK E+ +
Sbjct: 123 NQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADV 182
Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVES 314
+L + +++ G+Y R N G A + +++ A + E+
Sbjct: 183 RLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEADEA 232
Score = 78.1 bits (192), Expect = 2e-16
Identities = 34/167 (20%), Positives = 47/167 (28%), Gaps = 42/167 (25%)
Query: 406 EAPKFTKPL----KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 461
AP +T+P K + A + + G PTPSI W + E ++
Sbjct: 10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRH 69
Query: 462 TGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVA 521
L + P D Y TC EN
Sbjct: 70 QQ-WSLVMESVVPSDRGNY---------------------------------TCVVENKF 95
Query: 522 GSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
GS+ T TL +L S P + G V F +V
Sbjct: 96 GSIRQTYTLDVLERSPHR----PILQAGLPANQTAVLGSDVEFHCKV 138
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 142 bits (359), Expect = 4e-39
Identities = 45/204 (22%), Positives = 68/204 (33%), Gaps = 15/204 (7%)
Query: 6 APRFI--EKIQP--VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES- 60
AP + EK++ F C G+P+PTM W K+G E V +
Sbjct: 15 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 74
Query: 61 VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ 120
+L + + D G YTC N G + +L V+E+
Sbjct: 75 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRH-RPILQAGLPANASTVVG 133
Query: 121 SPATLKATVTGRPTPSICWYRGKEE----ILPDNGHTMEFNP-----TTGECVLSISEAT 171
V P I W + E+ PD ++ ++ VL++ T
Sbjct: 134 GDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVT 193
Query: 172 PQDEAVYSVKAVNTFGRAECRANL 195
D Y K N G+A A L
Sbjct: 194 EADAGEYICKVSNYIGQANQSAWL 217
Score = 122 bits (307), Expect = 6e-32
Identities = 40/265 (15%), Positives = 67/265 (25%), Gaps = 38/265 (14%)
Query: 285 NEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHD 344
+ E + + V + T F+ G P P + W +
Sbjct: 4 DFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFR-------CPAGGNPMPTMRWLKN 56
Query: 345 GTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEES 404
G K+ + Y+ + L + V P + G Y+C N G L V E+
Sbjct: 57 GKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRH 116
Query: 405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 464
V P I W + E+
Sbjct: 117 -RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKN---------------- 159
Query: 465 CVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV 524
+ + + N VL + +T G+ C+ N G
Sbjct: 160 --------GSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQA 211
Query: 525 TCTATLSLLPESEVTDVMESPRFIK 549
+A L V ++P K
Sbjct: 212 NQSAWL------TVLPKQQAPGREK 230
Score = 119 bits (300), Expect = 5e-31
Identities = 48/229 (20%), Positives = 76/229 (33%), Gaps = 35/229 (15%)
Query: 207 RVLEAPTIVRPL----QALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVS----KDIE 258
AP + VP +TV G P P ++W KNGKE +
Sbjct: 11 NNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYK 70
Query: 259 TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI------------------TV 300
++ L+++ G Y V NE G + + + +
Sbjct: 71 VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANAST 130
Query: 301 AEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDT 360
V +V S QW H E P DG P + + + +
Sbjct: 131 VVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGP--------DGLPYLKVLKHSGINSS 182
Query: 361 DGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPK 409
+ LA+ V +AG Y C N +G+A +A L V K+++ K
Sbjct: 183 NA-EVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREK 230
Score = 115 bits (289), Expect = 2e-29
Identities = 37/229 (16%), Positives = 69/229 (30%), Gaps = 25/229 (10%)
Query: 92 ANLIVLEKEESGEAPKFTKPLKP----VIAEAQSPATLKATVTGRPTPSICWYRGKEEIL 147
A V E + AP +T K A + + G P P++ W + +E
Sbjct: 2 AEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK 61
Query: 148 PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPR 207
++ + L + P D+ Y+ N +G +L + +
Sbjct: 62 QEHRIGG-YKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL------DVVERS 114
Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSK------------ 255
V + P ++W K+ ++ SK
Sbjct: 115 RHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVL 174
Query: 256 --DIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
N L + T+ G+Y +V N G+A S +T+ +
Sbjct: 175 KHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQ 223
Score = 83.8 bits (207), Expect = 2e-18
Identities = 32/179 (17%), Positives = 50/179 (27%), Gaps = 42/179 (23%)
Query: 394 ATLAVEEKEESGEAPKFTKPLKP----VIAEAQSPATLKATVTGRPTPSICWYRGKEEIL 449
A V E + AP +T K A + + G P P++ W + +E
Sbjct: 2 AEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK 61
Query: 450 PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQ 509
++ + L + P D+ Y
Sbjct: 62 QEHRIGG-YKVRNQHWSLIMESVVPSDKGNY----------------------------- 91
Query: 510 IGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
TC EN GS+ T L ++ S P A + G V F +V
Sbjct: 92 ----TCVVENEYGSINHTYHLDVVERSRHR----PILQAGLPANASTVVGGDVEFVCKV 142
Score = 83.0 bits (205), Expect = 3e-18
Identities = 27/112 (24%), Positives = 37/112 (33%), Gaps = 11/112 (9%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK-----------DGTELHATEHYLI 55
+ F CKV P + W K DG +
Sbjct: 119 ILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSG 178
Query: 56 TTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPK 107
+ L + N T+ D G Y CK +N G A SA L VL K+++ K
Sbjct: 179 INSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREK 230
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 142 bits (358), Expect = 3e-38
Identities = 43/303 (14%), Positives = 77/303 (25%), Gaps = 31/303 (10%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
AP +V + C G ++ W + + STL
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDP-----ESPGSTLT 54
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATL 125
N T ++ G Y C + + +L V + A + + V A L
Sbjct: 55 TRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDP-----AHSWNLLAQEVTVVEGQEAVL 109
Query: 126 KATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
+T S+ R + I +A D Y K +
Sbjct: 110 PCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG----FIIRKAKVLDSNTYVCKTMV 165
Query: 185 TFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVK 244
GR + L+ E P I L+ + + T
Sbjct: 166 N-GRESTSTGIWLK-----VNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNV 219
Query: 245 WFKNGKEIVSKDIETKDNVTK------LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
K G + + + L + + G Y N+ G + + +
Sbjct: 220 ILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279
Query: 299 TVA 301
+
Sbjct: 280 VES 282
Score = 120 bits (303), Expect = 8e-31
Identities = 60/342 (17%), Positives = 96/342 (28%), Gaps = 69/342 (20%)
Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQ 270
AP I L+V TVTL G+ V+W + D E+ + L +
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPISPYWTLDPESPGST--LTTRN 57
Query: 271 TTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV----MMDVRVESHPTASFQWFIHS 326
T K TG Y + + T+ + + V + +V V A
Sbjct: 58 ATFKNTGTYRCTELEDPMAGSTT--IHLYVKDPAHSWNLLAQEVTVVEGQEAVL------ 109
Query: 327 EPVVVTGK-PTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTA-V 384
P ++T V+ +G K V + G I + ++ Y C V
Sbjct: 110 -PCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGF---IIRKAKVLDSNTYVCKTMV 165
Query: 385 NPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWY-R 443
N L V E P+ ++ A + + T R
Sbjct: 166 NGRESTSTGIWLKVNRVH--PEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKR 223
Query: 444 GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS 503
G ++ + N LS++ QD +Y
Sbjct: 224 GDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIY----------------------- 260
Query: 504 KITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESP 545
+C A N G+ T T V+ES
Sbjct: 261 ----------SCVASNDVGTRTATMNFQ---------VVESH 283
Score = 114 bits (286), Expect = 2e-28
Identities = 49/306 (16%), Positives = 87/306 (28%), Gaps = 36/306 (11%)
Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 164
AP ++ E TL+ G S+ W +P +
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDG-------PISPYWTLDPESPGST 52
Query: 165 LSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTI-VRPLQALLV 223
L+ AT ++ Y + +L V + Q + V
Sbjct: 53 LTTRNATFKNTGTYRCTELEDPMAGSTTIHL-----------YVKDPAHSWNLLAQEVTV 101
Query: 224 PKDSTVTLEAEYTG-TPTPEVKWFKNGKEIVSKD-IETKDNVTKLVIKQTTKKTTGKYEI 281
+ L T V + G V + + +I++ + Y
Sbjct: 102 VEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVC 161
Query: 282 RVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVV----VTGKPTP 337
+ + E TS + + V +++E + E T
Sbjct: 162 KTMVNGRE-STSTGIWLKVNRVHPEPPQIKLEPSKLVRIR----GEAAQIVCSATNAEVG 216
Query: 338 LVTWSHDGTPMKEGKEVTIYQD--TDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAAT 395
G E + +QD + L+++ V ++AG+YSC A N VG A
Sbjct: 217 FNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMN 276
Query: 396 LAVEEK 401
V E
Sbjct: 277 FQVVES 282
Score = 80.0 bits (197), Expect = 1e-16
Identities = 36/252 (14%), Positives = 58/252 (23%), Gaps = 62/252 (24%)
Query: 326 SEPVVVTGKPTPL-------VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGL 378
E VV G+ L V W +P T+ ++ G L +N G
Sbjct: 12 PELVVEPGETVTLRCVSNGSVEWDGPISPY-----WTLDPESPG-STLTTRNATFKNTGT 65
Query: 379 YSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTP 437
Y CT + L V++ A + + V A L +T
Sbjct: 66 YRCTELEDPMAGSTTIHLYVKDP-----AHSWNLLAQEVTVVEGQEAVLPCLITDPALKD 120
Query: 438 SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR 497
S+ R + I +A D Y
Sbjct: 121 SVSLMREGGRQVLRKTVYFFSPWRG----FIIRKAKVLDSNTY----------------- 159
Query: 498 SVLLISKITRDQIGDVTCRAEN-VAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKV 556
C+ S + L + E P+ P
Sbjct: 160 ----------------VCKTMVNGRESTSTGIWLKVNRV-----HPEPPQIKLEPSKLVR 198
Query: 557 MDGQSVLFTAQV 568
+ G++
Sbjct: 199 IRGEAAQIVCSA 210
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 134 bits (339), Expect = 1e-36
Identities = 51/225 (22%), Positives = 80/225 (35%), Gaps = 31/225 (13%)
Query: 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS-- 62
PR +E ++ + +PA CK EG P PT+ W K G + + + +
Sbjct: 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67
Query: 63 TLEIIN-----PTKEDIGVYTCKATN-IGGVATCSANLIVLEKEESGEAPKFTKPLKPVI 116
+L + ++ D GVY C A N +G + A+L V + F + V+
Sbjct: 68 SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV-----AILRDDFRQNPSDVM 122
Query: 117 AEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDE 175
PA ++ G P P+I W + + + T L I+ D
Sbjct: 123 VAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERI-----TIRGGKLMITYTRKSDA 177
Query: 176 AVYSVKAVNTFGRAECR-ANLVLRKATTIDKPRVLEAPTIVRPLQ 219
Y N G E A L VLE P+ V+
Sbjct: 178 GKYVCVGTNMVGERESEVAELT-----------VLERPSFVKAAA 211
Score = 103 bits (258), Expect = 2e-25
Identities = 55/218 (25%), Positives = 83/218 (38%), Gaps = 32/218 (14%)
Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDN-------- 262
P IV L+V K TL + G PTP ++W+K G+ + + + + +
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 263 --VTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA----ETVMMDVRVESHP 316
++V + ++ G Y N GEA S ++ VA DV V
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAV-SHDASLEVAILRDDFRQNPSDVMVAVGE 127
Query: 317 TASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENA 376
A E G P P ++W DG+P+ + E + L I+ +A
Sbjct: 128 PAVM------ECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGK----LMITYTRKSDA 177
Query: 377 GLYSCTAVNPVGEAVAA-ATLAVEEKEESGEAPKFTKP 413
G Y C N VGE + A L V E+ P F K
Sbjct: 178 GKYVCVGTNMVGERESEVAELTVLER------PSFVKA 209
Score = 102 bits (256), Expect = 4e-25
Identities = 44/231 (19%), Positives = 71/231 (30%), Gaps = 61/231 (26%)
Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVT---IYQDTDG---LCKLAISEVFPENAGLYSCTAV 384
G+PTP + W G ++ K+ G ++ + G+Y C A
Sbjct: 33 AEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVAR 92
Query: 385 NPVGEAVAA-ATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT-GRPTPSICWY 442
N +GEAV+ A+L V + F + V+ PA ++ G P P+I W
Sbjct: 93 NYLGEAVSHDASLEV-----AILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWK 147
Query: 443 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLI 502
+ + + T L I+ D Y
Sbjct: 148 KDGSPLDDKDERI-----TIRGGKLMITYTRKSDAGKY---------------------- 180
Query: 503 SKITRDQIGDVTCRAENVAGSV-TCTATLSLLPESEVTDVMESPRFIKTPE 552
C N+ G + A L+ V+E P F+K
Sbjct: 181 -----------VCVGTNMVGERESEVAELT---------VLERPSFVKAAA 211
Score = 99.9 bits (249), Expect = 3e-24
Identities = 54/205 (26%), Positives = 72/205 (35%), Gaps = 16/205 (7%)
Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 164
P+ + +I PATL GRPTP+I WY+G E + D
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 165 LSIS-----EATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ 219
L + DE VY A N G A + L A +
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSH-DASLEVAI--------LRDDFRQNPS 119
Query: 220 ALLVPKDSTVTLEAEYT-GTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGK 278
++V +E + G P P + W K+G + KD KL+I T K GK
Sbjct: 120 DVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGK 179
Query: 279 YEIRVVNEAGEARTSGSVTITVAEA 303
Y N GE R S +TV E
Sbjct: 180 YVCVGTNMVGE-RESEVAELTVLER 203
Score = 85.6 bits (212), Expect = 3e-19
Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 11/110 (10%)
Query: 4 VLAPRFIEKIQPVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
+L F + V+ +PA+ C+ GHP PT++W+KDG+ L + +
Sbjct: 109 ILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITI---RGG 165
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVA-TCSANLIVLEKEESGEAPKFTKP 111
L I K D G Y C TN+ G + A L VLE+ P F K
Sbjct: 166 KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLER------PSFVKA 209
Score = 64.1 bits (156), Expect = 6e-12
Identities = 34/176 (19%), Positives = 54/176 (30%), Gaps = 42/176 (23%)
Query: 394 ATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNG 453
+L E+ P+ + +I PATL GRPTP+I WY+G E + D
Sbjct: 1 GSLRQED-----FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKD 55
Query: 454 HTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDV 513
L ++ + +R G
Sbjct: 56 DPRSHRMLLPSGSLFFLR----------------------------IVHGRKSRPDEGVY 87
Query: 514 TCRAENVAG-SVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
C A N G +V+ A+L + + F + P V G+ + Q
Sbjct: 88 VCVARNYLGEAVSHDASLEVA--------ILRDDFRQNPSDVMVAVGEPAVMECQP 135
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 133 bits (337), Expect = 2e-36
Identities = 39/196 (19%), Positives = 59/196 (30%), Gaps = 18/196 (9%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMT--WQKDGTELHATEHYLITTVESVST 63
PR + + ++ P C + M W K+G EL AT S
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-----SNME 57
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPA 123
I P ED G Y C + +A + V AP T + A
Sbjct: 58 YRINKPRAEDSGEYHCVYHFVSA-PKANATIEVKA------APDITGHKRSENKNEGQDA 110
Query: 124 TLKATVTGRPTPSICWYRGKEEILPDNGHT---MEFNPTTGECVLSISE-ATPQDEAVYS 179
+ G P P W + + + + ++ L+I +D Y
Sbjct: 111 MMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYE 170
Query: 180 VKAVNTFGRAECRANL 195
A N+ G A L
Sbjct: 171 CNATNSIGSASVSTVL 186
Score = 109 bits (273), Expect = 9e-28
Identities = 35/196 (17%), Positives = 65/196 (33%), Gaps = 18/196 (9%)
Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEV--KWFKNGKEIVSKDIETKDNVTKLVI 268
P IV + ++ VTL+ T + + W KNG E+ + + I
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVEL--TATRKNASNMEYRI 60
Query: 269 KQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA-EAETVMMDVRVESHPTASFQWFIHSE 327
+ + +G+Y V + + + ++ + A + A
Sbjct: 61 NKPRAEDSGEYHC-VYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMM------- 112
Query: 328 PVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQ----DTDGLCKLAISEV-FPENAGLYSCT 382
G P P W + E + + + + +L I + E+ G Y C
Sbjct: 113 YCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECN 172
Query: 383 AVNPVGEAVAAATLAV 398
A N +G A + L V
Sbjct: 173 ATNSIGSASVSTVLRV 188
Score = 106 bits (266), Expect = 8e-27
Identities = 36/207 (17%), Positives = 64/207 (30%), Gaps = 30/207 (14%)
Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGE 162
P+ + +I ++ P TL+ +T W + E+ +
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-------SN 55
Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALL 222
I++ +D Y + + A + V AP I ++
Sbjct: 56 MEYRINKPRAEDSGEYHCVY-HFVSAPKANATIE-----------VKAAPDITGHKRSEN 103
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD--------IETKDNVTKLVIKQTTKK 274
+ + + G P PE W K + + I K+N T+L I
Sbjct: 104 KNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQIT 163
Query: 275 T-TGKYEIRVVNEAGEARTSGSVTITV 300
G+YE N G A S + + V
Sbjct: 164 EDPGEYECNATNSIGSASVSTVLRVRV 190
Score = 103 bits (257), Expect = 1e-25
Identities = 37/226 (16%), Positives = 69/226 (30%), Gaps = 53/226 (23%)
Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVT--WSHDGTPMKEGKEVTIYQDTDGLCKL 366
+ +S + Q +T L+ W+ +G + ++ +
Sbjct: 12 VIIRDSLLPVTLQ-------CNLTSSSHTLMYSYWTKNGVELTATRKN------ASNMEY 58
Query: 367 AISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPAT 426
I++ E++G Y C + V A AT+ V+ AP T + A
Sbjct: 59 RINKPRAEDSGEYHCVY-HFVSAPKANATIEVKA------APDITGHKRSENKNEGQDAM 111
Query: 427 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS 486
+ G P P W + + + + + SS
Sbjct: 112 MYCKSVGYPHPEWMWRKKENGVFEEISN------------------------------SS 141
Query: 487 TETKIMTDGNRSVLLISKITRDQ-IGDVTCRAENVAGSVTCTATLS 531
I+ N + L I + + G+ C A N GS + + L
Sbjct: 142 GRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLR 187
Score = 86.8 bits (215), Expect = 6e-20
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTEL-----HATEHYLITTVES 60
AP + ++ Q A+ CK G+P P W+K + +++ + I E+
Sbjct: 92 APDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKEN 151
Query: 61 VSTLEIINP-TKEDIGVYTCKATNIGGVATCSANLIV 96
+ L I+N ED G Y C ATN G A+ S L V
Sbjct: 152 YTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 65.3 bits (159), Expect = 2e-12
Identities = 18/164 (10%), Positives = 39/164 (23%), Gaps = 52/164 (31%)
Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGE 464
P+ + +I ++ P TL+ +T W + E+ +
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKN-------ASN 55
Query: 465 CVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV 524
I++ +D Y C + +
Sbjct: 56 MEYRINKPRAEDSGEY---------------------------------HCVY-HFVSAP 81
Query: 525 TCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
AT+ V +P + +GQ + +
Sbjct: 82 KANATIE---------VKAAPDITGHKRSENKNEGQDAMMYCKS 116
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 131 bits (331), Expect = 8e-36
Identities = 40/195 (20%), Positives = 66/195 (33%), Gaps = 21/195 (10%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE--HYLITTVESVST 63
+ + + Q QP C VEG P + W KDG + + + ++ +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Query: 64 LEIINPTKEDIGVYTCKATN-IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
L + + + D G Y C+ + + L V P FT K + +P
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE------GVPFFTVEPKDLAVPPNAP 115
Query: 123 ATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
L G P P +I W+RG +I ++ ++S +
Sbjct: 116 FQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSP-----------SVLNVTGVTQSTMFSCE 164
Query: 182 AVNTFGRAECRANLV 196
A N G A R V
Sbjct: 165 AHNLKGLASSRTATV 179
Score = 109 bits (275), Expect = 5e-28
Identities = 32/198 (16%), Positives = 57/198 (28%), Gaps = 20/198 (10%)
Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 164
K + P L +V G P I W + + + + +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Query: 165 LSISEATPQDEAVYSVKAVNTFGRAECR-ANLVLRKATTIDKPRVLEAPTIVRPLQALLV 223
LS+ D Y + + + L V P + L V
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETEISQPVWLT-----------VEGVPFFTVEPKDLAV 110
Query: 224 PKDSTVTLEAEYTGTPTP-EVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIR 282
P ++ L E G P P + W++ +I V+ T + +
Sbjct: 111 PPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSP------SVLNVTGVTQSTMFSCE 164
Query: 283 VVNEAGEARTSGSVTITV 300
N G A +S + T+ +
Sbjct: 165 AHNLKGLA-SSRTATVHL 181
Score = 100 bits (250), Expect = 1e-24
Identities = 34/199 (17%), Positives = 66/199 (33%), Gaps = 28/199 (14%)
Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVTK 265
++ L V + V L G P+++W K+G + + D + + +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA---ETVMMDVRVESHPTASFQW 322
L +K + G+Y +V + S V +TV D+ V +
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETE-ISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLS- 119
Query: 323 FIHSEPVVVTGKPTPL-VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSC 381
G P P+ + W T + ++ + ++SC
Sbjct: 120 ------CEAVGPPEPVTIVWWRGTTKI----------GGPAPSPSVLNVTGVTQSTMFSC 163
Query: 382 TAVNPVGEAVA-AATLAVE 399
A N G A + AT+ ++
Sbjct: 164 EAHNLKGLASSRTATVHLQ 182
Score = 94.1 bits (234), Expect = 1e-22
Identities = 33/182 (18%), Positives = 57/182 (31%), Gaps = 27/182 (14%)
Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTI-YQDTDGLCKLA 367
+ V V G P + W DG ++ ++ I + + L+
Sbjct: 11 KLTVSQGQPVKL-------NCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLS 63
Query: 368 ISEVFPENAGLYSCTAVNPVGEAV-AAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPAT 426
+ V +AG Y C + + L VE P FT K + +P
Sbjct: 64 LKSVERSDAGRYWCQVEDGGETEISQPVWLTVE------GVPFFTVEPKDLAVPPNAPFQ 117
Query: 427 LKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS 485
L G P P +I W+RG +I ++ ++S +A
Sbjct: 118 LSCEAVGPPEPVTIVWWRGTTKIGGPAPSP-----------SVLNVTGVTQSTMFSCEAH 166
Query: 486 ST 487
+
Sbjct: 167 NL 168
Score = 76.0 bits (187), Expect = 4e-16
Identities = 20/163 (12%), Positives = 37/163 (22%), Gaps = 43/163 (26%)
Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466
K + P L +V G P I W + + + + +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS-VT 525
LS+ D Y C+ E+ + ++
Sbjct: 62 LSLKSVERSDAGRY---------------------------------WCQVEDGGETEIS 88
Query: 526 CTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
L+ V P F P+ V + +
Sbjct: 89 QPVWLT---------VEGVPFFTVEPKDLAVPPNAPFQLSCEA 122
Score = 70.6 bits (173), Expect = 3e-14
Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLP-TMTWQKDGTELHATEHYLITTVESVSTL 64
P F + + + P +C+ G P P T+ W + T++ S S L
Sbjct: 98 VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA-------PSPSVL 150
Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
+ +++C+A N+ G+A+ + L+
Sbjct: 151 NVTGV--TQSTMFSCEAHNLKGLASSRTATVHLQ 182
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 131 bits (331), Expect = 2e-35
Identities = 49/208 (23%), Positives = 74/208 (35%), Gaps = 15/208 (7%)
Query: 1 MAEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA----TEHYLIT 56
+ +PR IE +V + +PA CKVEG P PT+ W KDG + +
Sbjct: 4 AGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFK 63
Query: 57 TVESVSTLEIINPTKEDIGVYTCKATN-IGGVATCSANLIVLEKEESGEAPKFTKPLKPV 115
+ ++D G Y C A N +G + A+L + F K
Sbjct: 64 DGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAV-----LRDDFRVEPKDT 118
Query: 116 IAEAQSPATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNP---TTGECVLSISEAT 171
A L+ G P P++ W + + + + L IS
Sbjct: 119 RVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVE 178
Query: 172 PQDEAVYSVKAVNTFGRAE-CRANLVLR 198
P DE Y A N G E A L+++
Sbjct: 179 PIDEGNYKCIAQNLVGTRESSYAKLIVQ 206
Score = 108 bits (272), Expect = 3e-27
Identities = 52/218 (23%), Positives = 87/218 (39%), Gaps = 27/218 (12%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVT----- 264
++P I+ L+V K+ TL + G P P ++WFK+G+ + + + ++
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 265 --KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA----ETVMMDVRVESHPTA 318
++ ++ G+Y N G+A S ++ +A D RV TA
Sbjct: 68 FFYRTMQGKKEQDGGEYWCVAKNRVGQAV-SRHASLQIAVLRDDFRVEPKDTRVAKGETA 126
Query: 319 SFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDT------DGLCKLAISEVF 372
E G P P + W DG P+ + K ++ + G L IS V
Sbjct: 127 LL------ECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGG--NLLISNVE 178
Query: 373 PENAGLYSCTAVNPVGEAVAA-ATLAVEEKEESGEAPK 409
P + G Y C A N VG ++ A L V+ K +
Sbjct: 179 PIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHHH 216
Score = 101 bits (252), Expect = 1e-24
Identities = 46/252 (18%), Positives = 73/252 (28%), Gaps = 63/252 (25%)
Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEG---KEVTIYQDTDGLCK 365
D+ V+ + A+ V GKP P + W DG P+ ++D
Sbjct: 18 DLVVKKNEPATL-------NCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFY 70
Query: 366 LAISEVFPENAGLYSCTAVNPVGEAVAA-ATLAVEEKEESGEAPKFTKPLKPVIAEAQSP 424
+ ++ G Y C A N VG+AV+ A+L + + F K
Sbjct: 71 RTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI-----AVLRDDFRVEPKDTRVAKGET 125
Query: 425 ATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNP---TTGECVLSISEATPQDEAVY 480
A L+ G P P++ W + + + + L IS P DE Y
Sbjct: 126 ALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNY 185
Query: 481 SVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV-TCTATLSLLPESEVT 539
C A+N+ G+ + A L
Sbjct: 186 ---------------------------------KCIAQNLVGTRESSYAKLI-------- 204
Query: 540 DVMESPRFIKTP 551
V
Sbjct: 205 -VQVKAAAHHHH 215
Score = 71.0 bits (174), Expect = 3e-14
Identities = 31/175 (17%), Positives = 55/175 (31%), Gaps = 49/175 (28%)
Query: 394 ATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNG 453
A LA + ++P+ + ++ + PATL V G+P P+I W++ E + +
Sbjct: 1 APLAGQY-----QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEK 55
Query: 454 HTMEFNPTTGECVLS--ISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIG 511
+ G + QD Y
Sbjct: 56 KSHRVQFKDGALFFYRTMQGKKEQDGGEY------------------------------- 84
Query: 512 DVTCRAENVAGS-VTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFT 565
C A+N G V+ A+L + F P+ +V G++ L
Sbjct: 85 --WCVAKNRVGQAVSRHASLQIAV--------LRDDFRVEPKDTRVAKGETALLE 129
Score = 29.4 bits (66), Expect = 2.7
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 536 SEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
+ + +SPR I+ P V + +V
Sbjct: 1 APLAGQYQSPRIIEHPTDLVVKKNEPATLNCKV 33
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 129 bits (326), Expect = 1e-34
Identities = 30/219 (13%), Positives = 58/219 (26%), Gaps = 31/219 (14%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
+ + Q C+ GHP W K E+ S L
Sbjct: 18 GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNT---------SELI 68
Query: 66 IINPTKEDIGVYTCKATN-IGGVATCSANLIVLEKEESGE---------APKFTKPLKPV 115
+D G Y C+ N + + L V + ES + +
Sbjct: 69 FNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQ 128
Query: 116 IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDE 175
S L+ G P P W++ + + + + + + +
Sbjct: 129 KLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK-----------LYMVPYVDLEHQ 177
Query: 176 AVYSVKAVNTFGRAECRA-NLVLRKATTIDKPRVLEAPT 213
Y N + + +++ + + P E T
Sbjct: 178 GTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQTT 216
Score = 113 bits (283), Expect = 8e-29
Identities = 36/208 (17%), Positives = 61/208 (29%), Gaps = 23/208 (11%)
Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
K T + A L TG P W++ +EI N
Sbjct: 17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSE---------- 66
Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECR-ANL----VLRKATTIDKPRVLEAPTIVRPL 218
L + +D Y + N F + + L + I
Sbjct: 67 -LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEP 125
Query: 219 QALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGK 278
+ + ST+ L+ G+P P +WFKN + T + ++ + G
Sbjct: 126 TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL------THETKKLYMVPYVDLEHQGT 179
Query: 279 YEIRVVNEAGEARTSGSVTITVAEAETV 306
Y V N+ + V I + E +
Sbjct: 180 YWCHVYNDRDSQDSK-KVEIIIDELNNL 206
Score = 109 bits (274), Expect = 1e-27
Identities = 44/217 (20%), Positives = 65/217 (29%), Gaps = 33/217 (15%)
Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLV 267
V I ++ V V L TG P + +WFK KEI + N ++L+
Sbjct: 15 VPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPN------GNTSELI 68
Query: 268 IKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA-ETVMMDVRVESHPTASFQWFIHS 326
K G Y RV N S + V + E+ V S S
Sbjct: 69 FNAVHVKDAGFYVCRVNNNFTFE-FSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTS 127
Query: 327 EPV----------VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENA 376
+ + V G P P W + P + +T L + V E+
Sbjct: 128 QKLMPGSTLVLQCVAVGSPIPHYQWFKNELP--------LTHETKKL--YMVPYVDLEHQ 177
Query: 377 GLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKP 413
G Y C N + + + E P
Sbjct: 178 GTYWCHVYNDRDSQDSKKVEIIID-----ELNNLGHP 209
Score = 105 bits (263), Expect = 4e-26
Identities = 29/262 (11%), Positives = 55/262 (20%), Gaps = 80/262 (30%)
Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAI 368
V + TG P W + G +L
Sbjct: 27 SKAVLAGQFVKLC-------CRATGHPFVQYQWFKMNKEIPNGNT----------SELIF 69
Query: 369 SEVFPENAGLYSCTAVNPVGEAV-AAATLAVEEKEESGE---------APKFTKPLKPVI 418
+ V ++AG Y C N + L V + ES + +
Sbjct: 70 NAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQK 129
Query: 419 AEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEA 478
S L+ G P P W++ + + + + + + +
Sbjct: 130 LMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK-----------LYMVPYVDLEHQG 178
Query: 479 VYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEV 538
Y C N S
Sbjct: 179 TY---------------------------------WCHVYNDRDSQDSKKVEI------- 198
Query: 539 TDVMESPRFIKTPETAKVMDGQ 560
+++ + P+ + Q
Sbjct: 199 --IIDELNNLGHPDNKEQTTDQ 218
Score = 68.8 bits (168), Expect = 2e-13
Identities = 23/170 (13%), Positives = 38/170 (22%), Gaps = 51/170 (30%)
Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
K T + A L TG P W++ +EI N
Sbjct: 17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSE---------- 66
Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS-V 524
L + +D Y CR N
Sbjct: 67 -LIFNAVHVKDAGFY---------------------------------VCRVNNNFTFEF 92
Query: 525 TCTATLSLLPESEVTDVMES------PRFIKTPETAKVMDGQSVLFTAQV 568
+ + L + E + P + K+M G +++
Sbjct: 93 SQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVA 142
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 128 bits (323), Expect = 2e-34
Identities = 39/198 (19%), Positives = 64/198 (32%), Gaps = 12/198 (6%)
Query: 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQKDGTELHATEHYLITTVESV 61
L P E+ V + + + C H + W + + T ++
Sbjct: 6 YLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTN 65
Query: 62 STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVL----EKEESGEAPKFTKPLKPVIA 117
L I N D G Y+C ++ + + I L E+ K V A
Sbjct: 66 GNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYA 125
Query: 118 EAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAV 177
TL+ G P P I W + E +P L I +DE +
Sbjct: 126 LMGQNVTLECFALGNPVPDIRWRKVLEP-MPSTAEISTSGAV-----LKIFNIQLEDEGI 179
Query: 178 YSVKAVNTFGRAECRANL 195
Y +A N G+ + +A +
Sbjct: 180 YECEAENIRGKDKHQARI 197
Score = 109 bits (273), Expect = 2e-27
Identities = 31/195 (15%), Positives = 56/195 (28%), Gaps = 6/195 (3%)
Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGEC 163
P + V + L S W + + + T G
Sbjct: 9 PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG-- 66
Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLV 223
L I+ D+ YS + + + ++ IV + +
Sbjct: 67 NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIP-ERTTKPYPADIVVQFKDVYA 125
Query: 224 PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRV 283
VTLE G P P+++W K + + S + L I + G YE
Sbjct: 126 LMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAV-LKIFNIQLEDEGIYECEA 184
Query: 284 VNEAGEARTSGSVTI 298
N G+ + + +
Sbjct: 185 ENIRGKDKHQARIYV 199
Score = 98.8 bits (246), Expect = 6e-24
Identities = 31/197 (15%), Positives = 54/197 (27%), Gaps = 14/197 (7%)
Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPE--VKWFKNGKEIV---SKDIETKDNVTKL 266
P + V + + L + + +W N + K L
Sbjct: 9 PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNL 68
Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHS 326
I G Y V + + + E + + +
Sbjct: 69 YIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMG 128
Query: 327 EPV----VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCT 382
+ V G P P + W PM E++ L I + E+ G+Y C
Sbjct: 129 QNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAV-----LKIFNIQLEDEGIYECE 183
Query: 383 AVNPVGEAVAAATLAVE 399
A N G+ A + V+
Sbjct: 184 AENIRGKDKHQARIYVQ 200
Score = 96.9 bits (241), Expect = 2e-23
Identities = 39/240 (16%), Positives = 61/240 (25%), Gaps = 63/240 (26%)
Query: 297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTI 356
+ V E + +++ H W + P+ +
Sbjct: 17 EVRVKEGKGMVLLCDPPYHFP-----------------DDLSYRWLLNEFPVFITMDKRR 59
Query: 357 Y-QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAV----EEKEESGEAPKFT 411
+ T+G L I+ V + G YSC +P + E+
Sbjct: 60 FVSQTNG--NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIV 117
Query: 412 KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISE 471
K V A TL+ G P P I W + E +P L I
Sbjct: 118 VQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEP-MPSTAEISTSGAV-----LKIFN 171
Query: 472 ATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
+DE +Y C AEN+ G A +
Sbjct: 172 IQLEDEGIY---------------------------------ECEAENIRGKDKHQARIY 198
Score = 85.3 bits (211), Expect = 3e-19
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
+ + + V + Q C G+P+P + W+K + +T S + L+
Sbjct: 113 PADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIST----SGAVLK 168
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIV 96
I N ED G+Y C+A NI G A + V
Sbjct: 169 IFNIQLEDEGIYECEAENIRGKDKHQARIYV 199
Score = 54.9 bits (132), Expect = 8e-09
Identities = 19/165 (11%), Positives = 38/165 (23%), Gaps = 38/165 (23%)
Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGEC 465
P + V + L S W + + + T G
Sbjct: 9 PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG-- 66
Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
L I+ D+ Y +C + + + +
Sbjct: 67 NLYIANVEASDKGNY---------------------------------SCFVSSPSITKS 93
Query: 526 CTAT-LSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVG 569
+ + L+P E T + + + GQ+V
Sbjct: 94 VFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFAL 138
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 130 bits (327), Expect = 5e-34
Identities = 48/301 (15%), Positives = 88/301 (29%), Gaps = 31/301 (10%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
P + +V C G ++ W + H+ + + S S L
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPPSP-----HWTLYSDGSSSILST 55
Query: 67 INPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLK 126
N T ++ G Y C + + +L V + A + + V+ A L
Sbjct: 56 NNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDP-----ARPWNVLAQEVVVFEDQDALLP 110
Query: 127 ATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNT 185
+T + R + L + + F+P G +I A Y A+
Sbjct: 111 CLLTDPVLEAGVSLVRVRGRPLMRHTN-YSFSPWHG---FTIHRAKFIQSQDYQCSALMG 166
Query: 186 FGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP-EVK 244
GR ++ L+ I P P + L+ + + + +V
Sbjct: 167 -GRKVMSISIRLKVQKVIPGP-----PALTLVPAELVRIRGEAAQIVCSASSVDVNFDVF 220
Query: 245 WFKNGKEIVSKD-----IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
N ++ V L + Q + G Y N G+ TS +
Sbjct: 221 LQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVV 280
Query: 300 V 300
Sbjct: 281 E 281
Score = 113 bits (283), Expect = 5e-28
Identities = 44/346 (12%), Positives = 93/346 (26%), Gaps = 65/346 (18%)
Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQT 271
P I + L+V +TVTL G+ V+W + + ++ L
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSPHWTLYSDGSSSI--LSTNNA 58
Query: 272 TKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMM--DVRVESHPTASFQWFIHSEPV 329
T + TG Y + + + + ++ +V V A P
Sbjct: 59 TFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALL-------PC 111
Query: 330 VVTG-KPTPLVTWSH-DGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPV 387
++T V+ G P+ + I + Y C+A+
Sbjct: 112 LLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG----FTIHRAKFIQSQDYQCSALMGG 167
Query: 388 GEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYR-GKE 446
+ V + ++ ++ ++ P T ++ A + + + + +
Sbjct: 168 RK-VMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNT 226
Query: 447 EILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKIT 506
++ N L++ + Q Y
Sbjct: 227 KLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNY-------------------------- 260
Query: 507 RDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPE 552
+C A NV G + + V+ES
Sbjct: 261 -------SCVASNVQGKHSTSMFF---------RVVESAGNSHHHH 290
Score = 110 bits (277), Expect = 3e-27
Identities = 45/309 (14%), Positives = 94/309 (30%), Gaps = 36/309 (11%)
Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
+G P + ++ + + TL+ G S+ W P + H ++ +
Sbjct: 1 AGSIPVIEPSVPELVVKPGATVTLRCVGNG----SVEWDG------PPSPHWTLYSDGSS 50
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTI-VRPLQA 220
+LS + AT Q+ Y +L V + Q
Sbjct: 51 -SILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLY-----------VKDPARPWNVLAQE 98
Query: 221 LLVPKDSTVTLEAEYTGT-PTPEVKWFK-NGKEIVSKDIETKDNVTKLVIKQTTKKTTGK 278
++V +D L T V + G+ ++ + I + +
Sbjct: 99 VVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQD 158
Query: 279 YEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVV----VTGK 334
Y+ + + S S+ + V + + + + E +
Sbjct: 159 YQCSALMGGRK-VMSISIRLKVQKVIPGPPALTLVPAELVRIR----GEAAQIVCSASSV 213
Query: 335 PTPL-VTWSHDGTPMKEGKEVTIYQDTDGLCK-LAISEVFPENAGLYSCTAVNPVGEAVA 392
V H+ T + ++ + + L + +V ++AG YSC A N G+
Sbjct: 214 DVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHST 273
Query: 393 AATLAVEEK 401
+ V E
Sbjct: 274 SMFFRVVES 282
Score = 79.6 bits (196), Expect = 1e-16
Identities = 41/249 (16%), Positives = 65/249 (26%), Gaps = 62/249 (24%)
Query: 326 SEPVVVTGKPTPL-------VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGL 378
E VV G L V W +P T+Y D L+ + +N G
Sbjct: 12 PELVVKPGATVTLRCVGNGSVEWDGPPSP-----HWTLYSDGSS-SILSTNNATFQNTGT 65
Query: 379 YSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTP 437
Y CT AA L V++ A + + V+ A L +T
Sbjct: 66 YRCTEPGDPLGGSAAIHLYVKDP-----ARPWNVLAQEVVVFEDQDALLPCLLTDPVLEA 120
Query: 438 SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR 497
+ R + L + + F+P G +I A Y
Sbjct: 121 GVSLVRVRGRPLMRHTN-YSFSPWHG---FTIHRAKFIQSQDY----------------- 159
Query: 498 SVLLISKITRDQIGDVTCRAENVAGSV-TCTATLSLLPESEVTDVMESPRFIKTPETAKV 556
C A V + + L + + P P
Sbjct: 160 ----------------QCSALMGGRKVMSISIRLKVQKV-----IPGPPALTLVPAELVR 198
Query: 557 MDGQSVLFT 565
+ G++
Sbjct: 199 IRGEAAQIV 207
Score = 79.2 bits (195), Expect = 2e-16
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 3/96 (3%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPT-MTWQKDGTELHATEHY--LITTVESVST 63
P +V + + A C + + Q + T+L + + V T
Sbjct: 187 PALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLT 246
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
L + + G Y+C A+N+ G + S V+E
Sbjct: 247 LNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVES 282
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 129 bits (326), Expect = 9e-33
Identities = 65/521 (12%), Positives = 123/521 (23%), Gaps = 100/521 (19%)
Query: 22 QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81
L TC + E + L+ + E+ N ++ C +
Sbjct: 15 GSVLVTCSTSCDQPMLLGI-----ETPLPKKELLLPGNNRKVYELSNVQED--SQPMCYS 67
Query: 82 TNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG---RPTPSIC 138
G +T L V E P TL+ V G R ++
Sbjct: 68 NCPDGQSTAKTFLTVYWTPER-----VELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVV 122
Query: 139 WYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198
RG++E+ E ++ A +S + L
Sbjct: 123 LLRGEKEL-----KREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQG--LELFEN 175
Query: 199 KATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG---TPTPEVKWFKNGKEIVSK 255
+ + T + + ++ D+ T+ G +V + +
Sbjct: 176 TSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT 235
Query: 256 DIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA---ETVMMDVRV 312
D+ + T + G + G T+T+ ++ V
Sbjct: 236 VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEV 295
Query: 313 ESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVF 372
+ + + + + L +
Sbjct: 296 SEGTEVTVK-------CEAHPRAKVTLNGVPAQPLGPRAQ-------------LLLKATP 335
Query: 373 PENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKP--VIAEAQSPATLKAT 430
+N +SC+A V + E + P+ + P S T
Sbjct: 336 EDNGRSFSCSATLEVAGQLIHKNQTRELRVLY--GPRLDERDCPGNWTWPENSQQTPMCQ 393
Query: 431 VTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK 490
G P P + + LP
Sbjct: 394 AWGNPLPELKCLKDGTFPLP---------------------------------------- 413
Query: 491 IMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
+ +TRD G CRA + G VT T++
Sbjct: 414 --------IGESVTVTRDLEGTYLCRARSTQGEVTREVTVN 446
Score = 114 bits (287), Expect = 1e-27
Identities = 51/412 (12%), Positives = 98/412 (23%), Gaps = 64/412 (15%)
Query: 6 APRFIE-KIQPVVSHQEQPALFTCKVEG-HPLP--TMTWQKDGTELHATEHYLITTVESV 61
P +E P + C+VEG P T+ + EL +
Sbjct: 85 TPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA---VGEPAE 141
Query: 62 STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPV---IAE 118
T ++ ++C+ + P + V + E
Sbjct: 142 VTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLE 201
Query: 119 AQSPATLKATVTG---RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDE 175
+ T+ ++ G + G + + P + + T +DE
Sbjct: 202 VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKA-----SVSVTAEDE 256
Query: 176 AVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEY 235
+ G + + P L V + + VT++ E
Sbjct: 257 GTQRLTCAVILGNQSQETLQTVT---------IYSFPAPNVILTKPEVSEGTEVTVKCEA 307
Query: 236 TGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGS 295
+ +L++K T + + E +
Sbjct: 308 HPRAKVTLNGVPAQPLGPR---------AQLLLKATPEDNGRSFSCSATLEVAGQLIHKN 358
Query: 296 VTITVA-------EAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPM 348
T + + + + + G P P + DGT
Sbjct: 359 QTRELRVLYGPRLDERDCPGNWTWPENSQQTPM-------CQAWGNPLPELKCLKDGTFP 411
Query: 349 KEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400
E V + G Y C A + GE T+ V
Sbjct: 412 LPIGESVT--------------VTRDLEGTYLCRARSTQGEVTREVTVNVLS 449
Score = 86.8 bits (214), Expect = 2e-18
Identities = 46/470 (9%), Positives = 97/470 (20%), Gaps = 100/470 (21%)
Query: 115 VIAEAQSPATLKATVTGRPTPSICW--YRGKEEILPDNGHTMEFNPTTGECVLSISEATP 172
VI + + + + K+E+L + + +
Sbjct: 9 VILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNV----------- 57
Query: 173 QDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVR-PLQALLVPKDSTVTL 231
Q+++ + G++ + L V P V P +TL
Sbjct: 58 QEDSQPMCYSNCPDGQSTAKTFL-----------TVYWTPERVELAPLPSWQPVGKNLTL 106
Query: 232 EAEYTG---TPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAG 288
+ G V + KE+ + + + + R +
Sbjct: 107 RCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLR 166
Query: 289 EARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSE---PVVVTGK---PTPLVTWS 342
+ + + + ++ + G V +
Sbjct: 167 PQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLA 226
Query: 343 HDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLY--SCTAVNPVGEAVAAATLAVEE 400
+ T+ D A V E+ G +C + T+ +
Sbjct: 227 LGDQRLNP----TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS 282
Query: 401 KEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP 460
P L + T+K R ++ +
Sbjct: 283 ------FPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPL------------- 323
Query: 461 TTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENV 520
G R+ LL+ D +C A
Sbjct: 324 ----------------------------------GPRAQLLLKATPEDNGRSFSCSATLE 349
Query: 521 AGSVTCTATLSLLPESEVTDVMESPRFI--KTPETAKVMDGQSVLFTAQV 568
+ V+ PR P + Q
Sbjct: 350 VAGQLIHKNQTR-----ELRVLYGPRLDERDCPGNWTWPENSQQTPMCQA 394
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 121 bits (306), Expect = 3e-32
Identities = 33/194 (17%), Positives = 57/194 (29%), Gaps = 14/194 (7%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPL-PTMTWQKDGTELHATEHYLITTV---ESVS 62
+ + F C+V G ++W E + I+ V + S
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 63 TLEIINPTKEDIGVYTCKATN-IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQS 121
TL I N +D G+Y C T G + + N+ + +K F P +
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK------LMFKNAPTPQEFKEGE 116
Query: 122 PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
A + V P+I W +++ L I DE Y +
Sbjct: 117 DAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN---YLQIRGIKKTDEGTYRCE 173
Query: 182 AVNTFGRAECRANL 195
++
Sbjct: 174 GRILARGEINFKDI 187
Score = 109 bits (274), Expect = 7e-28
Identities = 26/201 (12%), Positives = 50/201 (24%), Gaps = 18/201 (8%)
Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRP-TPSICWYR-GKEEILPDNGHTMEFNPTTGEC 163
+ V G I W+ E++ P+
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 164 VLSISEATPQDEAVYSVKAVNTFG-RAECRANLVLRKATTIDKPRVLEAPTIVRPLQALL 222
L+I A D +Y G ++E N+ + +
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVK-----------IFQKLMFKNAPTPQE 111
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKY 279
+ + + + P + W G++++ K N L I+ K G Y
Sbjct: 112 FKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY-LQIRGIKKTDEGTY 170
Query: 280 EIRVVNEAGEARTSGSVTITV 300
A + + V
Sbjct: 171 RCEGRILARGEINFKDIQVIV 191
Score = 104 bits (261), Expect = 5e-26
Identities = 33/200 (16%), Positives = 61/200 (30%), Gaps = 26/200 (13%)
Query: 216 RPLQALLVPKDSTV------TLEAEYTGTP-TPEVKWFKNGKEIVSKD------IETKDN 262
R LQ +VP + + G ++ WF E +S + + D+
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 263 VTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA---ETVMMDVRVESHPTAS 319
+ L I G Y+ V E G ++ +V + + + + + A
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGT-QSEATVNVKIFQKLMFKNAPTPQEFKEGEDAV 119
Query: 320 FQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLY 379
V P + W H G + K+V ++ L I + + G Y
Sbjct: 120 IV-------CDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY--LQIRGIKKTDEGTY 170
Query: 380 SCTAVNPVGEAVAAATLAVE 399
C + + V
Sbjct: 171 RCEGRILARGEINFKDIQVI 190
Score = 103 bits (258), Expect = 1e-25
Identities = 28/239 (11%), Positives = 58/239 (24%), Gaps = 63/239 (26%)
Query: 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSH-DGTPMKEGKE-VT 355
++ E+ +V ++W +G + ++ ++
Sbjct: 12 GEISVGESKFFLCQVAGDA------------------KDKDISWFSPNGEKLSPNQQRIS 53
Query: 356 IYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAV-AAATLAVEEKEESGEAPKFTKPL 414
+ + D L I ++AG+Y C G A + + +K F
Sbjct: 54 VVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK------LMFKNAP 107
Query: 415 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATP 474
P + A + V P+I W +++ L I
Sbjct: 108 TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN---YLQIRGIKK 164
Query: 475 QDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533
DE Y C +A + ++
Sbjct: 165 TDEGTY---------------------------------RCEGRILARGEINFKDIQVI 190
Score = 88.0 bits (218), Expect = 3e-20
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
F P + + A+ C V PT+ W+ G ++ + + + + L+
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQ 158
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVL 97
I K D G Y C+ + ++ V+
Sbjct: 159 IRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
Score = 67.9 bits (166), Expect = 2e-13
Identities = 18/164 (10%), Positives = 33/164 (20%), Gaps = 45/164 (27%)
Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRP-TPSICWYR-GKEEILPDNGHTMEFNPTTGEC 465
+ V G I W+ E++ P+
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS-V 524
L+I A D +Y C G+
Sbjct: 63 TLTIYNANIDDAGIY---------------------------------KCVVTAEDGTQS 89
Query: 525 TCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
T + + + F P + +G+ + V
Sbjct: 90 EATVNVK---------IFQKLMFKNAPTPQEFKEGEDAVIVCDV 124
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 125 bits (314), Expect = 1e-30
Identities = 61/490 (12%), Positives = 126/490 (25%), Gaps = 65/490 (13%)
Query: 1 MAEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMT--WQKDG----TELHATEHYL 54
+ P + + + C + +++ G + ++ +
Sbjct: 107 LEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVN 166
Query: 55 ITTVESVS-----------TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESG 103
+ ++ I D G Y C+A + +A+L VL+ E
Sbjct: 167 PNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPEL 226
Query: 104 EAPKFTKPLK---PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNG-HTMEFNPT 159
+ + E + A + + + G +
Sbjct: 227 VYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDK 286
Query: 160 TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ 219
G + I+ +D Y A + E + V E TI R
Sbjct: 287 DGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQA-------WQLFVNEESTIPRSPT 339
Query: 220 ALLVPKDSTVTLEAEYTGTPTPEVKWFKNGK----EIVSKDIETKDNVTK---------- 265
+ S+V + Y + +K++ + ++++ V
Sbjct: 340 VVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLE 399
Query: 266 --------LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPT 317
+++ Q T + G Y + T I V +V T
Sbjct: 400 EPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGET 459
Query: 318 ASFQWFIHSEPVVVTGKPTPLVTWSHDG------TPMKEGKEVTIYQDTDGLCKLAISEV 371
+ + W++ G K + L L ++ V
Sbjct: 460 LKVPCHFPCKF---SSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLV 516
Query: 372 FPENAGLYSCTAVN-PVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQ---SPATL 427
+ G Y C AA +AVEE++ +G + K A +
Sbjct: 517 TRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAG--SRDVSLAKADAAPDEKVLDSGFR 574
Query: 428 KATVTGRPTP 437
+ P
Sbjct: 575 EIENKAIQDP 584
Score = 121 bits (304), Expect = 2e-29
Identities = 60/518 (11%), Positives = 127/518 (24%), Gaps = 58/518 (11%)
Query: 15 PVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEH-YLIT--TVESVSTLEIINPTK 71
P S + C+ +G +T + I ++
Sbjct: 25 PPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ 84
Query: 72 EDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG 131
+D G Y C + + E + P K + T+
Sbjct: 85 DDSGRYKCGLGINSRGLSFDVS------LEVSQGPGLLNDTKVYTVDLGRTVTINCPFKT 138
Query: 132 RPTPS-ICWYRGKEEILPDNGHTMEF--------------NPTTGECVLSISEATPQDEA 176
Y+ + + + I++ D
Sbjct: 139 ENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAG 198
Query: 177 VYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYT 236
Y +A + + A+L + K L AL + +
Sbjct: 199 QYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHC--ALGPEVANVAKFLCRQS 256
Query: 237 GTPTPEVKWFKNGKEI------VSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEA 290
+V GK + + + KD +VI K+ G+Y ++
Sbjct: 257 SGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQ 316
Query: 291 RTSGSV-----------------TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTG 333
S + +V + + S +++ E G
Sbjct: 317 EGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEG-AQNG 375
Query: 334 KPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAA 393
+ LV EG+ + + +G + ++++ +AG Y C
Sbjct: 376 RCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTL---WR 432
Query: 394 ATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILP--- 450
T+ ++ E + + P + W + LP
Sbjct: 433 TTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQD 492
Query: 451 --DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS 486
+ + + + L+++ T DE Y
Sbjct: 493 EGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQ 530
Score = 91.6 bits (226), Expect = 1e-19
Identities = 53/463 (11%), Positives = 118/463 (25%), Gaps = 81/463 (17%)
Query: 113 KPVIAEAQSPATLK---ATVTGRPTPSICWYRGKEEILPD--------------NGHTME 155
+ V + + ++ + W R +
Sbjct: 8 EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLT 67
Query: 156 FNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIV 215
P G V++I++ + D Y +C + R + V + P ++
Sbjct: 68 NFPENGTFVVNIAQLSQDDSGRY-----------KCGLGINSRGLSFDVSLEVSQGPGLL 116
Query: 216 RPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDI------------------ 257
+ V TVT+ + + K + +
Sbjct: 117 NDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLD 176
Query: 258 --ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI--------TVAEAETVM 307
T + +VI Q G+Y + +++ + + + + +V
Sbjct: 177 IQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVT 236
Query: 308 MDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKE-VTIYQD-TDGLCK 365
+ ++ + V + G + + + DG
Sbjct: 237 FHCALGPEVANVAKFLCR-----QSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFS 291
Query: 366 LAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPA 425
+ I+ + E+AG Y C A + + A + E + V A S
Sbjct: 292 VVITGLRKEDAGRYLCGAHSDGQLQEGSPIQA--WQLFVNEESTIPRSPTVVKGVAGSSV 349
Query: 426 TLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS 485
+ + + SI ++ E + V S Q E S+
Sbjct: 350 AVLCPYNRKESKSIKYWCLWEGAQNGRCPLL---------VDSEGWVKAQYEGRLSLLEE 400
Query: 486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTA 528
++++++T G C T
Sbjct: 401 -------PGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVE 436
Score = 78.5 bits (192), Expect = 2e-15
Identities = 43/379 (11%), Positives = 92/379 (24%), Gaps = 74/379 (19%)
Query: 223 VPKDSTVTLE---AEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK-------------- 265
+ ++V++ + W + G + + +
Sbjct: 12 SVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPE 71
Query: 266 -----LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA-EAETVMMDVRVESHPTAS 319
+ I Q ++ +G+Y+ + + S+ ++ V+ T +
Sbjct: 72 NGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVT 131
Query: 320 FQWFIHSEPVVV-------TGKPTPLVTWSHDGTPMKEGKEVTIYQDTDG--LCKLAISE 370
+E G LV S + + G L + I++
Sbjct: 132 INCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQ 191
Query: 371 VFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLK---PVIAEAQSPATL 427
+ +AG Y C A + A L V + E + + E + A
Sbjct: 192 LRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKF 251
Query: 428 KATVTGRPTPSICWYRGKEEILPDNG-HTMEFNPTTGECVLSISEATPQDEAVYSVKASS 486
+ + + G + G + I+ +D Y
Sbjct: 252 LCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRY------ 305
Query: 487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPR 546
C A + + + V E
Sbjct: 306 ---------------------------LCGAHSDGQLQEGSPIQ-----AWQLFVNEEST 333
Query: 547 FIKTPETAKVMDGQSVLFT 565
++P K + G SV
Sbjct: 334 IPRSPTVVKGVAGSSVAVL 352
Score = 59.6 bits (143), Expect = 2e-09
Identities = 31/289 (10%), Positives = 71/289 (24%), Gaps = 35/289 (12%)
Query: 293 SGSVTITVAEAETVMMDVRVES---HPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMK 349
G + E +V + + W G L++ +
Sbjct: 5 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGAR----GGCITLISSEGYVSSKY 60
Query: 350 EGKEVTIYQD-TDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAP 408
G+ + +G + I+++ +++G Y C +L V + P
Sbjct: 61 AGR-ANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQG------P 113
Query: 409 KFTKPLKPVIAEAQSPATLKATVTGRPTPS-ICWYRGKEEILPDNGHTMEFNPTTGECVL 467
K + T+ Y+ +
Sbjct: 114 GLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVL-------------VID 160
Query: 468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCT 527
S P + T + + ++I+++ G C+A + + S
Sbjct: 161 SSGYVNPNYTGRIRLDIQGTGQLLFS------VVINQLRLSDAGQYLCQAGDDSNSNKKN 214
Query: 528 ATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEI 576
A L +L + + F + E ++
Sbjct: 215 ADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDV 263
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 116 bits (292), Expect = 4e-30
Identities = 35/204 (17%), Positives = 63/204 (30%), Gaps = 18/204 (8%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESV---- 61
+ V + P +C G P + W+ D + Y S
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 62 ----STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIA 117
+ + + T+ED G YTC + GG + + ++ P P A
Sbjct: 64 TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL----VPPSKPTVNIPSSA 119
Query: 118 EAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTT-----GECVLSISEAT 171
+ A L + G P W++ + + T F+ ++ L +
Sbjct: 120 TIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLS 179
Query: 172 PQDEAVYSVKAVNTFGRAECRANL 195
D YS +A N +G +
Sbjct: 180 ASDTGEYSCEARNGYGTPMTSNAV 203
Score = 111 bits (278), Expect = 3e-28
Identities = 41/212 (19%), Positives = 67/212 (31%), Gaps = 26/212 (12%)
Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK----- 265
+ T+ + +P+++ V L Y+G +P V+W + +
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 266 ------LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA---ETVMMDVRVESHP 316
+ K T++ TG Y V E G + V + V TV +
Sbjct: 64 TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGN 123
Query: 317 TASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTI------YQDTDGLCKLAISE 370
A G P TW DG M + T Y +L
Sbjct: 124 RAVL------TCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDP 177
Query: 371 VFPENAGLYSCTAVNPVGEAVAAATLAVEEKE 402
+ + G YSC A N G + + + +E E
Sbjct: 178 LSASDTGEYSCEARNGYGTPMTSNAVRMEAVE 209
Score = 107 bits (268), Expect = 7e-27
Identities = 34/215 (15%), Positives = 63/215 (29%), Gaps = 26/215 (12%)
Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE-- 162
+ V +P L +G +P + W + + + + + +
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 163 ----CVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPL 218
++ T +D Y+ G + + L VL P+
Sbjct: 64 TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL---------IVLVPPSKPTVN 114
Query: 219 QALLVPKDSTVTLE-AEYTGTPTPEVKWFKNGKEIVS----------KDIETKDNVTKLV 267
+ L +E G+P E WFK+G + + +LV
Sbjct: 115 IPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELV 174
Query: 268 IKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
+ TG+Y N G TS +V + E
Sbjct: 175 FDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVE 209
Score = 97.3 bits (242), Expect = 2e-23
Identities = 34/247 (13%), Positives = 67/247 (27%), Gaps = 52/247 (21%)
Query: 293 SGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGK 352
GSVT+ +E +VR+ + +G +P V W D
Sbjct: 2 MGSVTVHSSEP-----EVRIPENNPVKL-------SCAYSGFSSPRVEWKFDQGDTTRLV 49
Query: 353 EVTIYQDTDGLCK-------LAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESG 405
+ + V E+ G Y+C G + + +
Sbjct: 50 CYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLV--- 106
Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 464
P P A + A L + G P W++ + + T F+ ++
Sbjct: 107 -PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSS-- 163
Query: 465 CVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV 524
+ + L+ ++ G+ +C A N G+
Sbjct: 164 --------------------------YVLNPTTGELVFDPLSASDTGEYSCEARNGYGTP 197
Query: 525 TCTATLS 531
+ +
Sbjct: 198 MTSNAVR 204
Score = 79.2 bits (195), Expect = 5e-17
Identities = 22/99 (22%), Positives = 31/99 (31%), Gaps = 8/99 (8%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLITTVESV--- 61
P P + A+ TC +G P TW KDG + S
Sbjct: 107 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 166
Query: 62 ----STLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
L + D G Y+C+A N G S + +
Sbjct: 167 NPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205
Score = 64.6 bits (157), Expect = 5e-12
Identities = 19/159 (11%), Positives = 39/159 (24%), Gaps = 34/159 (21%)
Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466
+ V +P L +G +P + W + + + +
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITA------ 57
Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC 526
S E ++ + +TR+ G TC G+
Sbjct: 58 -------------------SYEDRVTFLPT--GITFKSVTREDTGTYTCMVSEEGGNSYG 96
Query: 527 TATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFT 565
+ L+ V+ P + G + T
Sbjct: 97 EVKVKLI-------VLVPPSKPTVNIPSSATIGNRAVLT 128
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 120 bits (301), Expect = 4e-30
Identities = 52/318 (16%), Positives = 79/318 (24%), Gaps = 38/318 (11%)
Query: 14 QPVV---SHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESV-----STLE 65
+P E F T+ W + E E+ L
Sbjct: 23 EPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLW 82
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP--- 122
D G YTC N + + L V++K+ +P K I
Sbjct: 83 FRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITC 142
Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182
+ P+I WY G +I N E LS A + Y+
Sbjct: 143 PNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGM------NLSFLIALISNNGNYTCVV 196
Query: 183 VNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ--ALLVPKDSTVTLE----AEYT 236
L + P+ P I P + + +
Sbjct: 197 TYPENGRTFHLTRTLT-VKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFL 255
Query: 237 GTPTPEVKWFKNGKEI-------------VSKDIETKDNVTKLVIKQTTKK-TTGKYEIR 282
EV W +GK+ E + L IK+ T + Y
Sbjct: 256 MDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCH 315
Query: 283 VVNEAGEARTSGSVTITV 300
+ GE + V V
Sbjct: 316 ARSAKGEVAKAAKVKQKV 333
Score = 114 bits (287), Expect = 3e-28
Identities = 48/319 (15%), Positives = 97/319 (30%), Gaps = 33/319 (10%)
Query: 120 QSPATLKATVTGRPTPSICWYR---GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEA 176
+ + ++ WY ++ P N E + + VL D
Sbjct: 33 EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTG 92
Query: 177 VYSVKAVNTFGRAECRANL-VLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEY 235
Y+ NT ++ L V++K + + P L + + ++ +
Sbjct: 93 NYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRIT---CPNVDGYF 149
Query: 236 TGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAG--EARTS 293
+ P + W+ +I + + + L G Y V +
Sbjct: 150 PSSVKPTITWYMGCYKIQNFNNVIPEG-MNLSFLIALISNNGNYTCVVTYPENGRTFHLT 208
Query: 294 GSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVT--------GKPTPLVTWSHDG 345
++T+ V + + + S E +++ V W+ DG
Sbjct: 209 RTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDG 268
Query: 346 TP---------MKEGKEVTIYQDTDGLCKLAISEVFPEN-AGLYSCTAVNPVGEAVAAAT 395
+ E + +D L+I +V E+ Y C A + GE AA
Sbjct: 269 KKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAK 328
Query: 396 LAVEEKEESGEAPKFTKPL 414
+ + AP++T L
Sbjct: 329 VKQKV-----PAPRYTVEL 342
Score = 106 bits (265), Expect = 2e-25
Identities = 37/333 (11%), Positives = 80/333 (24%), Gaps = 56/333 (16%)
Query: 224 PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNV--------TKLVIKQTTKKT 275
+ + + + W+ ++ ++ L + T
Sbjct: 31 LFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLND 90
Query: 276 TGKYEIRVVNEAGEARTSGSVTITV-----AEAETVMMDVRVESHPTASFQWFIHSEPVV 330
TG Y + N ++ + + + + + +
Sbjct: 91 TGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDG--Y 148
Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPV--- 387
P +TW ++ V L+ N G Y+C P
Sbjct: 149 FPSSVKPTITWYMGCYKIQNFNNVIPEGMN-----LSFLIALISNNGNYTCVVTYPENGR 203
Query: 388 -GEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQ--SPATLKATVT----GRPTPSIC 440
T+ V ++ P P V+ E + + TV +
Sbjct: 204 TFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVW 263
Query: 441 WYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL 500
W ++ ++ S + ++ + +L
Sbjct: 264 WTIDGKKPDDITID-------------------------VTINESISHSRTEDETRTQIL 298
Query: 501 LISKITR-DQIGDVTCRAENVAGSVTCTATLSL 532
I K+T D C A + G V A +
Sbjct: 299 SIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331
Score = 80.3 bits (197), Expect = 1e-16
Identities = 35/216 (16%), Positives = 55/216 (25%), Gaps = 27/216 (12%)
Query: 297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPM-------K 349
I V E E + + H + W
Sbjct: 16 QIQVFEDEPARIKCPLFEHFL--------KFNYSTAHSAGLTLIWYWTRQDRDLEEPINF 67
Query: 350 EGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPK 409
E I ++ D L + G Y+C N + A L V +K+ +P
Sbjct: 68 RLPENRISKEKD---VLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPM 124
Query: 410 FTKPLKPVIAEAQSP---ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466
K I + P+I WY G +I N E
Sbjct: 125 KLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGM------N 178
Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLI 502
LS A + Y+ + E R++ +
Sbjct: 179 LSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVK 214
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 112 bits (281), Expect = 8e-30
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES-VSTL 64
PRFI+ + + + + KV G P P ++W +G + + + + + E + +L
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64
Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKE 100
D G Y C A N G AT + L VL KE
Sbjct: 65 IFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100
Score = 95.9 bits (239), Expect = 4e-24
Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 2/99 (2%)
Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
+ P+F + + + + + V+G P P + WY + D+ H M + G
Sbjct: 2 AMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSE-KG 60
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANL-VLRK 199
L D Y+ A N G A L VL K
Sbjct: 61 LHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
Score = 94.3 bits (235), Expect = 2e-23
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAI 368
++ ++ V+G P P V+W +G ++ + GL L
Sbjct: 14 NMSIDEGRFCRMD-------FKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIF 66
Query: 369 SEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKE 402
V +AG Y+C A N GEA L V KE
Sbjct: 67 EVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100
Score = 88.2 bits (219), Expect = 2e-21
Identities = 24/132 (18%), Positives = 39/132 (29%), Gaps = 34/132 (25%)
Query: 404 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
+ P+F + + + + + V+G P P + WY + D+ H M + G
Sbjct: 2 AMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSE-KG 60
Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
L D Y C A+N AG
Sbjct: 61 LHSLIFEVVRASDAGAY---------------------------------ACVAKNRAGE 87
Query: 524 VTCTATLSLLPE 535
T T L +L +
Sbjct: 88 ATFTVQLDVLAK 99
Score = 82.8 bits (205), Expect = 1e-19
Identities = 20/98 (20%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 209 LEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVT 264
+ P ++ + + + + ++ + +G P P+V W+ NG+ + S D I ++ +
Sbjct: 3 MGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLH 62
Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
L+ + G Y N AGEA + + + E
Sbjct: 63 SLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 111 bits (280), Expect = 1e-29
Identities = 27/95 (28%), Positives = 39/95 (41%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
APR +++ Q F V+ P + W +G EL + T V TLE
Sbjct: 8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLE 67
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKE 100
I++ +D G Y TN G A+ A L V +
Sbjct: 68 ILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGGD 102
Score = 96.6 bits (241), Expect = 2e-24
Identities = 19/97 (19%), Positives = 28/97 (28%), Gaps = 2/97 (2%)
Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
AP+ T ++ V +PT + WY E+ + G
Sbjct: 7 HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTS--GVL 64
Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKA 200
L I + D Y N G A A L +
Sbjct: 65 TLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
Score = 89.7 bits (223), Expect = 8e-22
Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 11/108 (10%)
Query: 298 ITVAEA---ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEV 354
T+ A M RV F + V KPT V W H+G ++E ++
Sbjct: 3 FTLDHAPRITLRMRSHRVPCGQNTRFI-------LNVQSKPTAEVKWYHNGVELQESSKI 55
Query: 355 TIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKE 402
G+ L I + +++G Y N GEA ATL V +
Sbjct: 56 HYTNT-SGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGGD 102
Score = 88.9 bits (221), Expect = 1e-21
Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 3/98 (3%)
Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVT 264
+ AP I +++ VP PT EVKW+ NG E+ V
Sbjct: 5 LDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVL 64
Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
L I +G Y N GEA ++ +T +
Sbjct: 65 TLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGGD 102
Score = 85.4 bits (212), Expect = 2e-20
Identities = 19/125 (15%), Positives = 28/125 (22%), Gaps = 35/125 (28%)
Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
AP+ T ++ V +PT + WY E+ + G
Sbjct: 7 HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTS--GVL 64
Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
L I + D Y N G +
Sbjct: 65 TLEILDCHTDDSGTY---------------------------------RAVCTNYKGEAS 91
Query: 526 CTATL 530
ATL
Sbjct: 92 DYATL 96
Score = 32.3 bits (74), Expect = 0.097
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 540 DVMESPRFIKTPETAKVMDGQSVLFTAQV 568
+ +PR + +V GQ+ F V
Sbjct: 4 TLDHAPRITLRMRSHRVPCGQNTRFILNV 32
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 110 bits (276), Expect = 4e-29
Identities = 27/94 (28%), Positives = 46/94 (48%)
Query: 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
LA R + K + + ++ + A F+C +G P+PT+TW + G L + + +TT + ST
Sbjct: 13 LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTF 72
Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
EI + D G Y+ N G L + +
Sbjct: 73 EISSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 106
Score = 92.0 bits (229), Expect = 1e-22
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 2/99 (2%)
Query: 101 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160
++ A + + + A G P P++ W R + + H +
Sbjct: 10 KTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTK-- 67
Query: 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRK 199
+ IS DE YSV N+ G+ E L ++K
Sbjct: 68 YKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 106
Score = 85.9 bits (213), Expect = 2e-20
Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 8/96 (8%)
Query: 305 TVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLC 364
T + V +A F G+P P VTW G + +
Sbjct: 19 TKPRSMTVYEGESARFS-------CDTDGEPVPTVTWLRKGQVLSTSARHQVTTT-KYKS 70
Query: 365 KLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400
IS V + G YS N G+ A TL +++
Sbjct: 71 TFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 106
Score = 83.9 bits (208), Expect = 8e-20
Identities = 18/132 (13%), Positives = 30/132 (22%), Gaps = 35/132 (26%)
Query: 399 EEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEF 458
++ A + + + A G P P++ W R + + H +
Sbjct: 6 HHSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT 65
Query: 459 NPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAE 518
+ IS DE Y + E
Sbjct: 66 TK--YKSTFEISSVQASDEGNY---------------------------------SVVVE 90
Query: 519 NVAGSVTCTATL 530
N G TL
Sbjct: 91 NSEGKQEAEFTL 102
Score = 82.0 bits (203), Expect = 4e-19
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
Query: 207 RVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNV 263
+ A I+ +++ V + + + G P P V W + G+ + + + T
Sbjct: 10 KTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYK 69
Query: 264 TKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
+ I G Y + V N G+ ++TI
Sbjct: 70 STFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 31.2 bits (71), Expect = 0.22
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 535 ESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
+ + R + P + V +G+S F+
Sbjct: 5 HHHSSKTTLAARILTKPRSMTVYEGESARFSCDT 38
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 113 bits (283), Expect = 5e-29
Identities = 32/202 (15%), Positives = 56/202 (27%), Gaps = 27/202 (13%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLI---------T 56
F+ + + C+++ P + W +DG L +
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 57 TVESVSTLEIINPTKEDIGVYTCKATNIGGVATC-SANLIVLEKEESGEAPKFTKPLKPV 115
VS L I + D G Y C + + P F + +
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLE------GLPYFLEEPEDR 116
Query: 116 IAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 174
A +P L G P P + W + + GH + S+
Sbjct: 117 TVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQ---------RSLHVPGLNK 167
Query: 175 EAVYSVKAVNTFGRAECRANLV 196
+ +S +A N G R +
Sbjct: 168 TSSFSCEAHNAKGVTTSRTATI 189
Score = 90.3 bits (224), Expect = 5e-21
Identities = 31/207 (14%), Positives = 55/207 (26%), Gaps = 24/207 (11%)
Query: 104 EAPKFTKPLKPVIAEAQSPATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 162
E F + TL+ P + W R + + + + E
Sbjct: 1 EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDE 60
Query: 163 -------CVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIV 215
L I+ D Y + V + P +
Sbjct: 61 QDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYV----------GLEGLPYFL 110
Query: 216 RPLQALLVPKDSTVTLEAEYTGTPTP-EVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKK 274
+ V ++ L + G P P ++ W ++ + + L + K
Sbjct: 111 EEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRS--LHVPGLNK- 167
Query: 275 TTGKYEIRVVNEAGEARTSGSVTITVA 301
T + N G TS + TITV
Sbjct: 168 -TSSFSCEAHNAKGVT-TSRTATITVL 192
Score = 90.0 bits (223), Expect = 6e-21
Identities = 35/211 (16%), Positives = 61/211 (28%), Gaps = 34/211 (16%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLE-AEYTGTPTPEVKWFKNGKEIVSKD------------ 256
E V + + T TL PEV W ++G+ + D
Sbjct: 1 EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDE 60
Query: 257 IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA---ETVMMDVRVE 313
+ V++L I TG+Y+ V S + + D V
Sbjct: 61 QDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQT-FVSQPGYVGLEGLPYFLEEPEDRTVA 119
Query: 314 SHPTASFQWFIHSEPVVVTGKPTPL-VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVF 372
++ + G P P+ + W D P + + ++
Sbjct: 120 ANTPFNLS-------CQAQGPPEPVDLLWLQDAVP--------LATAPGHGPQRSLHVPG 164
Query: 373 PENAGLYSCTAVNPVGEAV-AAATLAVEEKE 402
+SC A N G AT+ V ++
Sbjct: 165 LNKTSSFSCEAHNAKGVTTSRTATITVLPQQ 195
Score = 89.2 bits (221), Expect = 1e-20
Identities = 36/238 (15%), Positives = 65/238 (27%), Gaps = 65/238 (27%)
Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIY--------QDT 360
++ T + + P V W DG ++ D
Sbjct: 11 NITGARGLTGTL------RCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDW 64
Query: 361 DGLCKLAISEVFPENAGLYSCTAVNPVGEAVAA-ATLAVEEKEESGEAPKFTKPLKPVIA 419
+ +L I+ + + G Y C V+ + +E P F + +
Sbjct: 65 IVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLE------GLPYFLEEPEDRTV 118
Query: 420 EAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEA 478
A +P L G P P + W + + GH + S+ +
Sbjct: 119 AANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQ---------RSLHVPGLNKTS 169
Query: 479 VYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC-TATLSLLPE 535
+ +C A N G T TAT+++LP+
Sbjct: 170 SF---------------------------------SCEAHNAKGVTTSRTATITVLPQ 194
Score = 72.6 bits (178), Expect = 6e-15
Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 8/92 (8%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTM-TWQKDGTELHATEHYLITTVESVSTL 64
P F+E+ + P +C+ +G P P W +D L + +L
Sbjct: 106 LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQ-----RSL 160
Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
+ ++C+A N GV T I
Sbjct: 161 HVPGL--NKTSSFSCEAHNAKGVTTSRTATIT 190
Score = 59.9 bits (145), Expect = 1e-10
Identities = 21/165 (12%), Positives = 37/165 (22%), Gaps = 37/165 (22%)
Query: 406 EAPKFTKPLKPVIAEAQSPATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 464
E F + TL+ P + W R + + + + E
Sbjct: 1 EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDE 60
Query: 465 CVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS- 523
I S L I+ + G C +
Sbjct: 61 QDDWIV--------------------------VSQLRITSLQLSDTGQYQCLVFLGHQTF 94
Query: 524 VTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
V+ + + P F++ PE V + Q
Sbjct: 95 VSQPGYVG---------LEGLPYFLEEPEDRTVAANTPFNLSCQA 130
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 109 bits (274), Expect = 6e-29
Identities = 26/91 (28%), Positives = 36/91 (39%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
P + +Q + A F K G P PT W KDG + Y ++ + LE
Sbjct: 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLE 65
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIV 96
I D G+YTC N G + S L +
Sbjct: 66 IHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 93.9 bits (234), Expect = 2e-23
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 2/95 (2%)
Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
P L+ + S A TG P P+ W + + I + + + G
Sbjct: 5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDK--GGF 62
Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198
L I + D +Y+ N+ G L ++
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97
Score = 86.6 bits (215), Expect = 7e-21
Identities = 23/126 (18%), Positives = 37/126 (29%), Gaps = 35/126 (27%)
Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
P L+ + S A TG P P+ W + + I + + + G
Sbjct: 5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDK--GGF 62
Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
L I + D +Y TC +N AGSV+
Sbjct: 63 FLEIHKTDTSDSGLY---------------------------------TCTVKNSAGSVS 89
Query: 526 CTATLS 531
+ L+
Sbjct: 90 SSCKLT 95
Score = 86.6 bits (215), Expect = 8e-21
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 305 TVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLC 364
T + D V S A F V TG+P P W+ DG + +G + + +D G
Sbjct: 11 TGLQDTTVSSDSVAKFA-------VKATGEPRPTAIWTKDGKAITQGGKYKLSED-KGGF 62
Query: 365 KLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVE 399
L I + ++GLY+CT N G ++ L ++
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97
Score = 84.3 bits (209), Expect = 4e-20
Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVT 264
+ P IV LQ V DS + TG P P W K+GK I +
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF 62
Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
L I +T +G Y V N AG +S +TI
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 29.9 bits (68), Expect = 0.63
Identities = 3/28 (10%), Positives = 7/28 (25%)
Query: 541 VMESPRFIKTPETAKVMDGQSVLFTAQV 568
+ P + + V F +
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVKA 30
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 110 bits (277), Expect = 1e-28
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 1/127 (0%)
Query: 70 TKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV 129
++ G N V A L + +E+ P FTK + + S A V
Sbjct: 6 GRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKV 65
Query: 130 TGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRA 189
G P P + W++ + ++++ G C L+ISE D+A Y+ KAVN+ G A
Sbjct: 66 EGYPDPEVMWFKDDNPVKESRHFQIDYDE-EGNCSLTISEVCGDDDAKYTCKAVNSLGEA 124
Query: 190 ECRANLV 196
C A L+
Sbjct: 125 TCTAELL 131
Score = 106 bits (266), Expect = 3e-27
Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES-VSTL 64
P F + I + + A F CKVEG+P P + W KD + + H+ I E +L
Sbjct: 41 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 100
Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPK 107
I +D YTCKA N G ATC+A L+V + GE
Sbjct: 101 TISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEG 143
Score = 100 bits (251), Expect = 4e-25
Identities = 42/146 (28%), Positives = 58/146 (39%), Gaps = 14/146 (9%)
Query: 271 TTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV-------MMDVRVESHPTASFQWF 323
+ +K +G +N + E V ++D+ V A F
Sbjct: 5 SGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFD-- 62
Query: 324 IHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTA 383
V G P P V W D P+KE + I D +G C L ISEV ++ Y+C A
Sbjct: 63 -----CKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKA 117
Query: 384 VNPVGEAVAAATLAVEEKEESGEAPK 409
VN +GEA A L VE + GE
Sbjct: 118 VNSLGEATCTAELLVETMGKEGEGEG 143
Score = 98.8 bits (246), Expect = 2e-24
Identities = 35/155 (22%), Positives = 53/155 (34%), Gaps = 34/155 (21%)
Query: 376 AGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP 435
+G + +N A L +E+ P FTK + + S A V G P
Sbjct: 10 SGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYP 69
Query: 436 TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDG 495
P + W++ + ++++ G C L+ISE D+A Y
Sbjct: 70 DPEVMWFKDDNPVKESRHFQIDYDE-EGNCSLTISEVCGDDDAKY--------------- 113
Query: 496 NRSVLLISKITRDQIGDVTCRAENVAGSVTCTATL 530
TC+A N G TCTA L
Sbjct: 114 ------------------TCKAVNSLGEATCTAEL 130
Score = 81.4 bits (201), Expect = 2e-18
Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 11/145 (7%)
Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLV 223
+ +S + S N + + + + P + + + V
Sbjct: 1 ISGMSGRKASGSSPTSPINANKVENEDA-------FLEEVAEEKPHVKPYFTKTILDMEV 53
Query: 224 PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGKY 279
+ S + + G P PEV WFK+ + ++ L I + KY
Sbjct: 54 VEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKY 113
Query: 280 EIRVVNEAGEARTSGSVTITVAEAE 304
+ VN GEA + + + E
Sbjct: 114 TCKAVNSLGEATCTAELLVETMGKE 138
Score = 40.6 bits (95), Expect = 3e-04
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 3/63 (4%)
Query: 506 TRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFT 565
R G N A L + E P F KT +V++G + F
Sbjct: 6 GRKASGSSPTSPINANKVENEDAFLEEVAE---EKPHVKPYFTKTILDMEVVEGSAARFD 62
Query: 566 AQV 568
+V
Sbjct: 63 CKV 65
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 115 bits (289), Expect = 1e-28
Identities = 46/321 (14%), Positives = 82/321 (25%), Gaps = 44/321 (13%)
Query: 4 VLAPRFI-EKIQPVVSHQEQPALFTCKVEGHPL---------PTMTWQKDGTELHATEHY 53
L P + ++ +P C L + W+K G
Sbjct: 26 WLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR 85
Query: 54 LITTVESVSTLEIINPTKEDIG-VYTCKATNIGG-VATCSANLIVLEKEESGEAPKFTKP 111
+ L I N T D Y C T G + + P
Sbjct: 86 VKN-----GDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKP------PSCIPE 134
Query: 112 LKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEA 170
+ + L + + +I WY+ +E++ D + L I
Sbjct: 135 TYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQN-----LIIHNP 189
Query: 171 TPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVT 230
+D Y R + + K T+ + I+ P V
Sbjct: 190 ELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKIN--VTIGEPAN 247
Query: 231 LEAEYTGTPTPE----VKWFKNGKEIVSKDIETKDNVTK--------LVIKQTTKKTTGK 278
+ T + W I+ D +T L + T++ G
Sbjct: 248 ITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGN 307
Query: 279 -YEIRVVNEAGEARTSGSVTI 298
Y R N + + +V +
Sbjct: 308 TYTCRGHNYYFDKTLTTTVVL 328
Score = 104 bits (260), Expect = 8e-25
Identities = 40/318 (12%), Positives = 79/318 (24%), Gaps = 56/318 (17%)
Query: 113 KPVIAEAQSPATLK---------ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
+A P + K + + W + + P N +
Sbjct: 37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGD------ 90
Query: 164 VLSISEATPQD-EAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALL 222
L I+ T D Y G + + P+ + L
Sbjct: 91 -LWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRS----------HIRKPPSCIPETYELG 139
Query: 223 VPKDSTVTLEAEYT-GTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEI 281
+ L + W+KN +E++ + + L+I + +G+Y+
Sbjct: 140 THDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDC 199
Query: 282 RVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVV----------- 330
V + + V+ + V F+ + + V
Sbjct: 200 YVHYDDVRIKNDIVVSRCK--------ILTVIPSQDHRFKLILDPKINVTIGEPANITCT 251
Query: 331 VTGKPTP----LVTWSHDGTPMKEGKEVTIYQDTDGLC----KLAISEVFPENAG-LYSC 381
L+ W + + T L V E G Y+C
Sbjct: 252 AVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTC 311
Query: 382 TAVNPVGEAVAAATLAVE 399
N + T+ +E
Sbjct: 312 RGHNYYFDKTLTTTVVLE 329
Score = 101 bits (252), Expect = 1e-23
Identities = 43/345 (12%), Positives = 83/345 (24%), Gaps = 64/345 (18%)
Query: 207 RVLEAPTIVRPLQALLVPKDSTVTLE---------AEYTGTPTPEVKWFKNGKEIVSKDI 257
+ L + + + + + V W K GK +
Sbjct: 25 KWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNR 84
Query: 258 ETKDNVTKLVIKQTTKKTTG-KYEIRVVNEAGEARTSGSVTITVAEAETVM---MDVRVE 313
K+ L I T + +Y V + G+ G V + + + + ++
Sbjct: 85 RVKNGD--LWIANYTSNDSHRRYLCTVTTKNGDC-VQGIVRSHIRKPPSCIPETYELGTH 141
Query: 314 SHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFP 373
++ K +TW + + L I
Sbjct: 142 DKYGIDLYC------GILYAKHYNNITWYKNNQELIIDGTKYSQSGQ----NLIIHNPEL 191
Query: 374 ENAGLYSCTAVNPVGEAVAAATLAVEEK---EESGEAPKFTKPLKPVIAEAQSPATLKAT 430
E++G Y C ++ + S + + PA + T
Sbjct: 192 EDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCT 251
Query: 431 VTGRPTP----SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS 486
I W I+ + ++G
Sbjct: 252 AVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGI--------------------- 290
Query: 487 TETKIMTDGNRSVLLISKITRDQIGDV-TCRAENVAGSVTCTATL 530
+ L +T + IG+ TCR N T T T+
Sbjct: 291 ---------TEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTV 326
Score = 79.9 bits (196), Expect = 2e-16
Identities = 35/290 (12%), Positives = 67/290 (23%), Gaps = 64/290 (22%)
Query: 294 GSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKE 353
G++ A E S ++ +V W G +
Sbjct: 35 GTMNDMAALGEPFSAKCPPIEDSLLSHRY----------NDKDNVVNWEKIGKTRRPLN- 83
Query: 354 VTIYQDTDGLCKLAISEVFPENAG-LYSCTAVNPVGEAV-AAATLAVEEKEESGEAPKFT 411
+ +G L I+ ++ Y CT G+ V + + P
Sbjct: 84 ---RRVKNG--DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKP------PSCI 132
Query: 412 KPLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSIS 470
+ + L + + +I WY+ +E++ D + L I
Sbjct: 133 PETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQN-----LIIH 187
Query: 471 EATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATL 530
+D Y C + +
Sbjct: 188 NPELEDSGRY---------------------------------DCYVHYDDVRIKNDIVV 214
Query: 531 SLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV-GYSERLEIPLI 579
S V + + V G+ T S ++ LI
Sbjct: 215 SRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLI 264
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 108 bits (271), Expect = 2e-28
Identities = 30/94 (31%), Positives = 41/94 (43%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
P F+ +PV A C V G P P + W+K G +L A+E + L
Sbjct: 13 PPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLL 72
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
+ D GVY C+A N G A +A + VLE
Sbjct: 73 LTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEP 106
Score = 95.5 bits (238), Expect = 7e-24
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Query: 98 EKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFN 157
+ G P F + +PV + + A LK V G P P + W +G +++ + +
Sbjct: 6 SSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPAD 65
Query: 158 PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
E L ++ A P D VY +A N G A A +
Sbjct: 66 G--AEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVT 102
Score = 90.1 bits (224), Expect = 5e-22
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 307 MMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKL 366
VRV S A + VV G+P P+V W G + + ++ D L
Sbjct: 20 PRPVRVVSGAEAELK-------CVVLGEPPPVVVWEKGGQQLAASERLSFPAD-GAEHGL 71
Query: 367 AISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEK 401
++ P +AG+Y C A N GEA AAA + V E
Sbjct: 72 LLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEP 106
Score = 87.8 bits (218), Expect = 4e-21
Identities = 28/131 (21%), Positives = 43/131 (32%), Gaps = 35/131 (26%)
Query: 400 EKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFN 459
+ G P F + +PV + + A LK V G P P + W +G +++ + +
Sbjct: 6 SSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPAD 65
Query: 460 PTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAEN 519
E L ++ A P D VY CRA N
Sbjct: 66 G--AEHGLLLTAALPTDAGVY---------------------------------VCRARN 90
Query: 520 VAGSVTCTATL 530
AG A +
Sbjct: 91 AAGEAYAAAAV 101
Score = 77.8 bits (192), Expect = 1e-17
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 6/106 (5%)
Query: 198 RKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD- 256
KA++ D+ P +R + + V + L+ G P P V W K G+++ + +
Sbjct: 3 MKASSGDQG---SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASER 59
Query: 257 --IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
L++ G Y R N AGEA + +VT+
Sbjct: 60 LSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLE 105
Score = 33.5 bits (77), Expect = 0.037
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 534 PESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
++ D P F++ P +V+ G V
Sbjct: 3 MKASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVV 37
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 108 bits (271), Expect = 2e-28
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES-VSTL 64
P F++ + + + CKV G P P ++WQ DG + + + E+ V +L
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSL 68
Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEES 102
I T D G+YTC ATN G + S L+V KE
Sbjct: 69 IIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106
Score = 97.1 bits (242), Expect = 2e-24
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 1/96 (1%)
Query: 101 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160
SG P F + + + + V+G PTP + W + + PD+ H M
Sbjct: 5 SSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRE-N 63
Query: 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
G L I T +D +Y+ A N G+ LV
Sbjct: 64 GVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELV 99
Score = 90.9 bits (226), Expect = 3e-22
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAI 368
D+ V+ V+G PTP ++W DG P++ + +G+ L I
Sbjct: 18 DLTVQEGKLCRMD-------CKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLII 70
Query: 369 SEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEES 404
V +AG+Y+C A N G+ + L V KE
Sbjct: 71 EPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106
Score = 89.7 bits (223), Expect = 9e-22
Identities = 27/128 (21%), Positives = 40/128 (31%), Gaps = 34/128 (26%)
Query: 403 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 462
SG P F + + + + V+G PTP + W + + PD+ H M
Sbjct: 5 SSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRE-N 63
Query: 463 GECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAG 522
G L I T +D +Y TC A N AG
Sbjct: 64 GVHSLIIEPVTSRDAGIY---------------------------------TCIATNRAG 90
Query: 523 SVTCTATL 530
+ + L
Sbjct: 91 QNSFSLEL 98
Score = 78.9 bits (195), Expect = 4e-18
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVS----KDIETKDNVTKL 266
P ++ L V + ++ + +G PTP++ W +GK + K + ++ V L
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSL 68
Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA 303
+I+ T + G Y N AG+ S + + E+
Sbjct: 69 IIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKES 105
Score = 29.6 bits (67), Expect = 0.92
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 545 PRFIKTPETAKVMDGQSVLFTAQV 568
P F++ P V +G+ +V
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKV 33
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 114 bits (286), Expect = 4e-28
Identities = 41/212 (19%), Positives = 67/212 (31%), Gaps = 29/212 (13%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
P ++ L C+VEG L W E AT + + L +
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSAT--VMKSGGLPSLGLTL 216
Query: 67 INPTKE-DIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATL 125
N T + + TC A N G A S + V F ++ A +
Sbjct: 217 ANVTSDLNRKNVTCWAENDVGRAEVSVQVNV----------SFPASVQLHTAVEMHHWCI 266
Query: 126 KATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV-----LSISEATPQDEAVYSV 180
+V G+P PS+ W + + EF L +++ T + Y++
Sbjct: 267 PFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTL 326
Query: 181 KAVNTFGRAECRANLVLRKATTIDKPRVLEAP 212
A N FG+A ++ P
Sbjct: 327 LAANPFGQASASIMA-----------AFMDNP 347
Score = 104 bits (259), Expect = 2e-24
Identities = 38/200 (19%), Positives = 69/200 (34%), Gaps = 18/200 (9%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKD--NVTKLV 267
PT+ + V V L + G + W E + +++ ++ +
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL 216
Query: 268 IKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSE 327
T+ N+ G A S V + V+ +V + VE H
Sbjct: 217 ANVTSDLNRKNVTCWAENDVGRAEVS--VQVNVSFPASVQLHTAVEMHHW--------CI 266
Query: 328 PVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCK------LAISEVFPENAGLYSC 381
P V G+P P + W +G+ + E + + L +++ N G Y+
Sbjct: 267 PFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTL 326
Query: 382 TAVNPVGEAVAAATLAVEEK 401
A NP G+A A+ A +
Sbjct: 327 LAANPFGQASASIMAAFMDN 346
Score = 84.4 bits (208), Expect = 6e-18
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESV--- 61
+ F +Q + + V+G P P++ W +G+ L+ T +E
Sbjct: 245 VNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANE 304
Query: 62 ----STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
L + PT + G YT A N G A+ S ++
Sbjct: 305 TVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 346
Score = 83.6 bits (206), Expect = 1e-17
Identities = 32/220 (14%), Positives = 56/220 (25%), Gaps = 59/220 (26%)
Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEA 390
V G+ W + + GL + N +C A N VG A
Sbjct: 182 VEGRGLEQAGWILTELEQSATVMKSGGLPSLGL--TLANVTSDLNRKNVTCWAENDVGRA 239
Query: 391 VAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILP 450
+ + V F ++ A + +V G+P PS+ W +
Sbjct: 240 EVSVQVNV----------SFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNE 289
Query: 451 DNGHTMEFNPTTGECV-----LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKI 505
+ EF L +++ T + Y
Sbjct: 290 TSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNY------------------------- 324
Query: 506 TRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESP 545
T A N G + + + M++P
Sbjct: 325 --------TLLAANPFGQASASIMAA---------FMDNP 347
Score = 80.9 bits (199), Expect = 9e-17
Identities = 30/208 (14%), Positives = 54/208 (25%), Gaps = 28/208 (13%)
Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
P + + L+ V GR W + E + M+
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQ---SATVMKSGGLPSLG 213
Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLV 223
+ + + + + A N GRAE + + +Q
Sbjct: 214 LTLANVTSDLNRKNVTCWAENDVGRAEVSVQV---------------NVSFPASVQLHTA 258
Query: 224 PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK----------LVIKQTTK 273
+ + G P P ++W NG + + + L + Q T
Sbjct: 259 VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH 318
Query: 274 KTTGKYEIRVVNEAGEARTSGSVTITVA 301
G Y + N G+A S
Sbjct: 319 VNNGNYTLLAANPFGQASASIMAAFMDN 346
Score = 42.8 bits (100), Expect = 2e-04
Identities = 18/148 (12%), Positives = 32/148 (21%), Gaps = 38/148 (25%)
Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
P + + L+ V GR W + E +
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLG--- 213
Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQ-IGDVTCRAENVAGSV 524
L ++ +T D +VTC AEN G
Sbjct: 214 ----------------------------------LTLANVTSDLNRKNVTCWAENDVGRA 239
Query: 525 TCTATLSLLPESEVTDVMESPRFIKTPE 552
+ +++ + V
Sbjct: 240 EVSVQVNVSFPASVQLHTAVEMHHWCIP 267
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 110 bits (276), Expect = 6e-28
Identities = 35/208 (16%), Positives = 57/208 (27%), Gaps = 23/208 (11%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS---- 62
V + + TC G P + W+ A Y +
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 63 ----TLEIINPTKEDIGVYTCKATNIGGVATCSA--NLIVLEKEESGEAPKFTKPLKPVI 116
+ + T++D G YTC + GG +L VL P P
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVP------PSKPTISVPSS 115
Query: 117 AEAQSPATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV------LSISE 169
+ A L + G P W++ +L + + + L
Sbjct: 116 VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDP 175
Query: 170 ATPQDEAVYSVKAVNTFGRAECRANLVL 197
T D Y +A N +G A +
Sbjct: 176 VTAFDSGEYYCQAQNGYGTAMRSEAAHM 203
Score = 102 bits (256), Expect = 3e-25
Identities = 37/212 (17%), Positives = 64/212 (30%), Gaps = 27/212 (12%)
Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK------ 265
++ + VP++ ++ L Y+G +P V+W +
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 266 -----LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA---ETVMMDVRVESHPT 317
+ T+K G+Y V E G+ S+ +TV T+ + V
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNR 121
Query: 318 ASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLC-------KLAISE 370
A G P +W DG M + L
Sbjct: 122 AVLTCS------EHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDP 175
Query: 371 VFPENAGLYSCTAVNPVGEAVAAATLAVEEKE 402
V ++G Y C A N G A+ + ++ E
Sbjct: 176 VTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207
Score = 86.6 bits (214), Expect = 1e-19
Identities = 30/237 (12%), Positives = 59/237 (24%), Gaps = 46/237 (19%)
Query: 304 ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGL 363
T DV+V + + +G +P V W
Sbjct: 5 YTAQSDVQVPENESIKL-------TCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYA 57
Query: 364 CK-------LAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKP 416
+ + S V ++ G Y+C G+ ++ + P P
Sbjct: 58 DRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLV----PPSKPTISVP 113
Query: 417 VIAEAQSPATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQ 475
+ A L + G P W++ +L +
Sbjct: 114 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRA----------------- 156
Query: 476 DEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532
+ D L+ +T G+ C+A+N G+ + +
Sbjct: 157 ----------FMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 203
Score = 74.2 bits (182), Expect = 2e-15
Identities = 24/104 (23%), Positives = 31/104 (29%), Gaps = 9/104 (8%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLI--------T 56
P P A+ TC +G P +W KDG + + T
Sbjct: 104 PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 163
Query: 57 TVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKE 100
L T D G Y C+A N G A S + E
Sbjct: 164 IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207
Score = 67.3 bits (164), Expect = 6e-13
Identities = 20/158 (12%), Positives = 36/158 (22%), Gaps = 34/158 (21%)
Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467
V L T +G +P + W + + + + V
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV- 60
Query: 468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCT 527
+ + S +TR G+ TC G
Sbjct: 61 -----------------------TFSSSG---ITFSSVTRKDNGEYTCMVSEEGGQNYGE 94
Query: 528 ATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFT 565
++ L V+ P + V G + T
Sbjct: 95 VSIHLT-------VLVPPSKPTISVPSSVTIGNRAVLT 125
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 106 bits (267), Expect = 7e-28
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES-VSTL 64
AP+ E+IQ Q A F +V G P P W K+G ++ ++ E V L
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 64
Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
I + T ED KA NI G + A L+V K
Sbjct: 65 VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
Score = 103 bits (258), Expect = 1e-26
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
EAPK + ++ S A + V G+P P WY+ +I + + C
Sbjct: 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPE-DNVC 62
Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
L I + T +D A VKA+N G A L+
Sbjct: 63 ELVIRDVTGEDSASIMVKAINIAGETSSHAFLL 95
Score = 94.3 bits (235), Expect = 1e-23
Identities = 23/73 (31%), Positives = 35/73 (47%)
Query: 329 VVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
V V GKP P W +G ++ + Y D +C+L I +V E++ A+N G
Sbjct: 27 VRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAG 86
Query: 389 EAVAAATLAVEEK 401
E + A L V+ K
Sbjct: 87 ETSSHAFLLVQAK 99
Score = 92.7 bits (231), Expect = 5e-23
Identities = 25/125 (20%), Positives = 39/125 (31%), Gaps = 34/125 (27%)
Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
EAPK + ++ S A + V G+P P WY+ +I + + C
Sbjct: 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPE-DNVC 62
Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
L I + T +D A +A N+AG +
Sbjct: 63 ELVIRDVTGEDSASI---------------------------------MVKAINIAGETS 89
Query: 526 CTATL 530
A L
Sbjct: 90 SHAFL 94
Score = 85.0 bits (211), Expect = 3e-20
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 209 LEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVT 264
+EAP I +Q+ V + S G P PE +W+KNG +I D +DNV
Sbjct: 3 MEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVC 62
Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
+LVI+ T + + ++ +N AGE + + +
Sbjct: 63 ELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96
Score = 31.9 bits (73), Expect = 0.13
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 542 MESPRFIKTPETAKVMDGQSVLFTAQV 568
ME+P+ + ++ V G F +V
Sbjct: 3 MEAPKIFERIQSQTVGQGSDAHFRVRV 29
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 105 bits (265), Expect = 1e-27
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES-VSTL 64
P F + + Q + + +V+G P P ++W ++ + + E + L
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRL 64
Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
I+ + D G YTCKA N G C A L V +
Sbjct: 65 RILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
Score = 98.1 bits (245), Expect = 6e-25
Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
S P F L + V G P P + W R ++ + PD E G
Sbjct: 2 SKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEA-EGG 60
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
C L I A D Y+ KAVN +G +C A L
Sbjct: 61 LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLE 95
Score = 89.6 bits (223), Expect = 6e-22
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 19/104 (18%)
Query: 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIY 357
+V E + V+M +RV G+P P+V+W + P++ +
Sbjct: 15 QSVREGQDVIMSIRV-------------------QGEPKPVVSWLRNRQPVRPDQRRFAE 55
Query: 358 QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEK 401
+ GLC+L I +AG Y+C AVN G A L V +
Sbjct: 56 EAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
Score = 88.9 bits (221), Expect = 1e-21
Identities = 28/128 (21%), Positives = 35/128 (27%), Gaps = 34/128 (26%)
Query: 404 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
S P F L + V G P P + W R ++ + PD E G
Sbjct: 2 SKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEA-EGG 60
Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
C L I A D Y TC+A N G+
Sbjct: 61 LCRLRILAAERGDAGFY---------------------------------TCKAVNEYGA 87
Query: 524 VTCTATLS 531
C A L
Sbjct: 88 RQCEARLE 95
Score = 80.4 bits (199), Expect = 9e-19
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 4/93 (4%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTK 265
PT L V + V + G P P V W +N + + E + + +
Sbjct: 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
L I + G Y + VNE G + + +
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 27.6 bits (62), Expect = 4.0
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 545 PRFIKTPETAKVMDGQSVLFTAQV 568
P F + V +GQ V+ + +V
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRV 29
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 105 bits (263), Expect = 2e-27
Identities = 29/96 (30%), Positives = 40/96 (41%)
Query: 101 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160
S AP F LK P T V G P P I W++ ++I P + H
Sbjct: 4 GSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLD 63
Query: 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
G C L + +T D+ Y++ A N GR C L+
Sbjct: 64 GTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLM 99
Score = 103 bits (259), Expect = 1e-26
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA-TEHYLITTVES-VST 63
AP F K++ + P FTC+V G+P P + W KDG ++ ++HY I +
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 67
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEES 102
L T +D G YT A N G +C+ L+V
Sbjct: 68 LHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106
Score = 94.3 bits (235), Expect = 2e-23
Identities = 30/128 (23%), Positives = 40/128 (31%), Gaps = 33/128 (25%)
Query: 403 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 462
S AP F LK P T V G P P I W++ ++I P + H
Sbjct: 4 GSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLD 63
Query: 463 GECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAG 522
G C L + +T D+ Y T A N G
Sbjct: 64 GTCSLHTTASTLDDDGNY---------------------------------TIMAANPQG 90
Query: 523 SVTCTATL 530
++CT L
Sbjct: 91 RISCTGRL 98
Score = 86.6 bits (215), Expect = 1e-20
Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 8/97 (8%)
Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKE-GKEVTIYQDTDGLCKLA 367
++ +F V G P P + W DG + TI +D DG C L
Sbjct: 17 HYKIFEGMPVTFT-------CRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLH 69
Query: 368 ISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEES 404
+ ++ G Y+ A NP G L V+
Sbjct: 70 TTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106
Score = 83.9 bits (208), Expect = 7e-20
Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 5/100 (5%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVT 264
AP L+ + + VT G P P++ WFK+GK+I K D
Sbjct: 7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTC 66
Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAE 304
L +T G Y I N G +G + + +
Sbjct: 67 SLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106
Score = 29.6 bits (67), Expect = 0.92
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 543 ESPRFIKTPETAKVMDGQSVLFTAQV 568
+P F + K+ +G V FT +V
Sbjct: 7 GAPFFEMKLKHYKIFEGMPVTFTCRV 32
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 110 bits (277), Expect = 3e-27
Identities = 47/318 (14%), Positives = 88/318 (27%), Gaps = 46/318 (14%)
Query: 9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTM-----TWQKDGTE-----LHATEHYLITTV 58
++ V C ++ + TW + G H T+ +
Sbjct: 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62
Query: 59 ESVS-------------TLEIINPTKEDIGVYTCKA-TNIGGVATCSANLIVLEKEESGE 104
+ + +L + ED G YTC T G + L VL K
Sbjct: 63 KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK----- 117
Query: 105 APKFTKPLKPVIAEAQSPATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT-TGE 162
P+ T ++ V + + + GRP I W+ + + + T T
Sbjct: 118 -PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVT 176
Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTI-VRPLQAL 221
+ + ++ D + K + + L V P + +
Sbjct: 177 SLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNL---------TVYYPPEVSISGYDNN 227
Query: 222 LVPKDSTVTLEAEYTGTPTP-EVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYE 280
+ TL + P P W + + L+I+ K
Sbjct: 228 WYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQ---LLIRPVDKPINTTLI 284
Query: 281 IRVVNEAGEARTSGSVTI 298
V N G + +V +
Sbjct: 285 CNVTNALGARQAELTVQV 302
Score = 101 bits (253), Expect = 5e-24
Identities = 46/325 (14%), Positives = 77/325 (23%), Gaps = 59/325 (18%)
Query: 108 FTKPLKPVIAEAQSPATLKATVTGRPTP-----SICWYRGKEEILPDNGH---------- 152
+ V TL + + W R E H
Sbjct: 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62
Query: 153 ------TMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF-GRAECRANLVLRKATTIDK 205
L + +DE Y+ V G L
Sbjct: 63 KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWL---------- 112
Query: 206 PRVLEAPTIVRPLQALLVPKDSTVTLE-AEYTGTPTPEVKWFKNGKEI------VSKDIE 258
RVL P +Q + + + G P ++ W + +
Sbjct: 113 -RVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSG 171
Query: 259 TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTA 318
T + ++ +++ +V +E+ E +V +TV V +
Sbjct: 172 TVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSI-------SGY 224
Query: 319 SFQWFIHSEPVV----VTGKPTPL-VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFP 373
W++ P P WS P+ Q L I V
Sbjct: 225 DNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQ-------LLIRPVDK 277
Query: 374 ENAGLYSCTAVNPVGEAVAAATLAV 398
C N +G A T+ V
Sbjct: 278 PINTTLICNVTNALGARQAELTVQV 302
Score = 85.5 bits (211), Expect = 1e-18
Identities = 36/201 (17%), Positives = 52/201 (25%), Gaps = 21/201 (10%)
Query: 3 EVLA-PRFIEKIQPVVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLIT---T 57
VLA P+ ++Q V E + C G P +TW D + T T
Sbjct: 113 RVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGT 172
Query: 58 VESVSTLEIINPTKEDIGVYTCKATNIGGVATCSA--NLIVLEKEESGEAPKFTKPLKPV 115
V S ++ ++ D TCK + NL V
Sbjct: 173 VTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPP-----EVSISGYDNN 227
Query: 116 IAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 174
Q+ ATL P P W + P + L I
Sbjct: 228 WYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPP---FAVAQGAQ-----LLIRPVDKPI 279
Query: 175 EAVYSVKAVNTFGRAECRANL 195
N G + +
Sbjct: 280 NTTLICNVTNALGARQAELTV 300
Score = 84.4 bits (208), Expect = 4e-18
Identities = 43/352 (12%), Positives = 81/352 (23%), Gaps = 87/352 (24%)
Query: 214 IVRPLQALLVPKDSTVTLEAEYTGTPTP-----EVKWFKNGK------------------ 250
+V+ + +VTL ++ W ++G+
Sbjct: 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62
Query: 251 ---EIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA---EAE 304
E V+ + + L + + G Y V +R S + + V +
Sbjct: 63 KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSR-SVDIWLRVLAKPQNT 121
Query: 305 TVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQD--TDG 362
+ V++ P V G+P +TW D M +V +
Sbjct: 122 AEVQKVQLTGEPVPMA------RCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTV 175
Query: 363 LCKLAISEVFPENAGLYSCTAVNPVGEA--VAAATLAVEEKEESGEAPKFTKPLKPVIAE 420
+ + +C + E + L V
Sbjct: 176 TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPP-----EVSISGYDNNWYL 230
Query: 421 AQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAV 479
Q+ ATL P P W +
Sbjct: 231 GQNEATLTCDARSNPEPTGYNWSTTMGPL------------------------------- 259
Query: 480 YSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
+ LLI + + + C N G+ T+
Sbjct: 260 -------PPFAVAQGAQ---LLIRPVDKPINTTLICNVTNALGARQAELTVQ 301
Score = 69.0 bits (168), Expect = 6e-13
Identities = 37/278 (13%), Positives = 75/278 (26%), Gaps = 57/278 (20%)
Query: 297 TITVAEAETVMMDVRVESHPT-----ASFQWFIHSEPV-VVTGKPTPLVTWSHDGTPMKE 350
+ ++V + ++ + W H E + T ++S
Sbjct: 9 QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFV 68
Query: 351 GKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN-PVGEAVAAATLAVEEKEESGEAPK 409
+ L + + E+ G Y+C V P G L V K P+
Sbjct: 69 AARLG---AELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK------PQ 119
Query: 410 FTKPLKPVIAEAQSPATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLS 468
T ++ V + + + GRP I W+ + + + T
Sbjct: 120 NTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTV---- 175
Query: 469 ISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTA 528
S+ ++ ++ +VTC+ E+ +
Sbjct: 176 ----------------------------TSLWILVPSSQVDGKNVTCKVEHESFEKPQLL 207
Query: 529 TLSLLPESEVTDVMESPRF-IKTPETAKVMDGQSVLFT 565
T++L V P I + + T
Sbjct: 208 TVNL-------TVYYPPEVSISGYDNNWYLGQNEATLT 238
Score = 60.5 bits (146), Expect = 3e-10
Identities = 20/97 (20%), Positives = 24/97 (24%), Gaps = 9/97 (9%)
Query: 3 EVLAPR--FIEKIQPVVSHQEQPALFTCKVEGHPLPT-MTWQKDGTELHATEHYLITTVE 59
V P I + A TC +P PT W L V
Sbjct: 212 TVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPF------AVA 265
Query: 60 SVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
+ L I K C TN G + V
Sbjct: 266 QGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 105 bits (263), Expect = 4e-27
Identities = 25/101 (24%), Positives = 39/101 (38%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
P+ I+ + + KV G T TW K ++ +EH + E+ S L
Sbjct: 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLT 66
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAP 106
I+ +E G YT N G NL V++K +
Sbjct: 67 ILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGT 107
Score = 90.1 bits (224), Expect = 6e-22
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 7/104 (6%)
Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
P+ + + A L VTG + W + +++I +E +
Sbjct: 6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSE--NGS 63
Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPR 207
L+I A + Y++ N G + + NL T +DKP
Sbjct: 64 KLTILAARQEHCGCYTLLVENKLGSRQAQVNL-----TVVDKPD 102
Score = 89.7 bits (223), Expect = 8e-22
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKL 266
P I++ + V +V L + TGT W K K+I + +E +N +KL
Sbjct: 6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKL 65
Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
I ++ G Y + V N+ G + ++T+
Sbjct: 66 TILAARQEHCGCYTLLVENKLGSRQAQVNLTVV 98
Score = 82.4 bits (204), Expect = 4e-19
Identities = 23/150 (15%), Positives = 38/150 (25%), Gaps = 42/150 (28%)
Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
P+ + + A L VTG + W + +++I +E +
Sbjct: 6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSE--NGS 63
Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
L+I A + Y T EN GS
Sbjct: 64 KLTILAARQEHCGCY---------------------------------TLLVENKLGSRQ 90
Query: 526 CTATLSLLPESEVTDVMESPRFI-KTPETA 554
L+ V D + P P +
Sbjct: 91 AQVNLT------VVDKPDPPAGTPSGPSSG 114
Score = 80.1 bits (198), Expect = 2e-18
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 329 VVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
VTG TW ++E + + + ++++ KL I E+ G Y+ N +G
Sbjct: 29 GKVTGTQPITCTWMKFRKQIQESEHMKV-ENSENGSKLTILAARQEHCGCYTLLVENKLG 87
Query: 389 EAVAAATLAVEEKEESGEAP 408
A L V +K +
Sbjct: 88 SRQAQVNLTVVDKPDPPAGT 107
Score = 28.4 bits (64), Expect = 2.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 543 ESPRFIKTPETAKVMDGQSVLFTAQV 568
P+ I+ PE KV G+SV +V
Sbjct: 6 SGPQIIQFPEDQKVRAGESVELFGKV 31
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 104 bits (261), Expect = 6e-27
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 8/108 (7%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA-TEHYLITTVES-VST 63
AP FI K Q + C++ P P + W+++ + T+ + + T
Sbjct: 15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVT 74
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKP 111
L I + K+D G YT A N GV TC+ L V + P T P
Sbjct: 75 LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR------PNQTLP 116
Score = 101 bits (254), Expect = 6e-26
Identities = 26/118 (22%), Positives = 37/118 (31%), Gaps = 11/118 (9%)
Query: 100 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 159
E AP F + L+ ++ P P + W R E + + +
Sbjct: 10 HEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDN 69
Query: 160 TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRP 217
TG L I + +D Y+V AVN G C L V P P
Sbjct: 70 TGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD-----------VTARPNQTLP 116
Score = 91.7 bits (228), Expect = 2e-22
Identities = 28/163 (17%), Positives = 40/163 (24%), Gaps = 48/163 (29%)
Query: 387 VGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE 446
+G + E AP F + L+ ++ P P + W R E
Sbjct: 1 MGHHHHHHS------HEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNE 54
Query: 447 EILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKIT 506
+ + + TG L I + +D Y
Sbjct: 55 MVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWY-------------------------- 88
Query: 507 RDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIK 549
T A N AG TC L DV P
Sbjct: 89 -------TVSAVNEAGVTTCNTRL---------DVTARPNQTL 115
Score = 88.2 bits (219), Expect = 3e-21
Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 17/125 (13%)
Query: 293 SGSVTITVAEA---ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMK 349
+ A +V + + ++ P P + W + ++
Sbjct: 5 HHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLE-------CQISAIPPPKLFWKRNNEMVQ 57
Query: 350 E-GKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAP 408
+++YQD G L I +V ++AG Y+ +AVN G L V + P
Sbjct: 58 FNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR------P 111
Query: 409 KFTKP 413
T P
Sbjct: 112 NQTLP 116
Score = 80.9 bits (200), Expect = 1e-18
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Query: 207 RVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKD 261
AP + Q+ V + +V LE + + P P++ W +N + + +
Sbjct: 11 EHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNT 70
Query: 262 NVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV 306
L+IK KK G Y + VNEAG + + +T +T+
Sbjct: 71 GRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTL 115
Score = 32.0 bits (73), Expect = 0.14
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 534 PESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
+ +P FI P++ KV++G SV Q+
Sbjct: 5 HHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQI 39
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 102 bits (257), Expect = 2e-26
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
AP ++ + + +C G+P P + W KD L ++ + L
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK--DGNRNLT 67
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEE 101
I KED G+YTC+A ++ G A A I+ +E
Sbjct: 68 IRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQE 103
Score = 88.5 bits (220), Expect = 2e-21
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 94 LIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHT 153
L VLE+ AP T L+ + T +G P P I W++ E ++ D+G
Sbjct: 3 LTVLERV----APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIV 58
Query: 154 MEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
++ G L+I +DE +Y+ +A + G A+ A +
Sbjct: 59 LK----DGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 97
Score = 85.9 bits (213), Expect = 1e-20
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 207 RVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIV-SKDIETKDNVTK 265
APTI L+ ++ + +G P P++ WFK+ + +V I KD
Sbjct: 6 LERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRN 65
Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAET 305
L I++ K+ G Y + + G A+ I A+ +T
Sbjct: 66 LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKT 105
Score = 83.5 bits (207), Expect = 1e-19
Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 37/136 (27%)
Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
AP T L+ + T +G P P I W++ E ++ D+G ++ G
Sbjct: 9 VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK----DGNR 64
Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
L+I +DE +Y TC+A +V G
Sbjct: 65 NLTIRRVRKEDEGLY---------------------------------TCQACSVLGCAK 91
Query: 526 CTATLSLLPESEVTDV 541
A + E T++
Sbjct: 92 VEAFFIIEGAQEKTNL 107
Score = 80.5 bits (199), Expect = 1e-18
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEA 390
+G P P + W D + E + + DG L I V E+ GLY+C A + +G A
Sbjct: 34 ASGNPPPQIMWFKDNETLVEDSGIVL---KDGNRNLTIRRVRKEDEGLYTCQACSVLGCA 90
Query: 391 VAAATLAVEEKEE 403
A +E +E
Sbjct: 91 KVEAFFIIEGAQE 103
Score = 28.8 bits (65), Expect = 1.7
Identities = 4/28 (14%), Positives = 8/28 (28%)
Query: 541 VMESPRFIKTPETAKVMDGQSVLFTAQV 568
+P E G+S+ +
Sbjct: 7 ERVAPTITGNLENQTTSIGESIEVSCTA 34
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 107 bits (267), Expect = 5e-26
Identities = 46/290 (15%), Positives = 81/290 (27%), Gaps = 34/290 (11%)
Query: 22 QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81
+ TC + W++ E E S L + N T D G Y C
Sbjct: 16 STFVLTCSGSA----PVVWERMSQEPP-QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTH 70
Query: 82 TNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ-SPATLKATVTGRPTPSICWY 140
+ G+ T + + + + I + + T+ VT P + +
Sbjct: 71 NDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLH 129
Query: 141 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKA 200
K ++ + + ++ Y K + A V R
Sbjct: 130 EKKGDVALPVPYD-----------HQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQ 178
Query: 201 TTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKE----IVSKD 256
+ V T+VR + +TL G +W KE +
Sbjct: 179 VSSINVSVNAVQTVVR--------QGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVT 230
Query: 257 IETKDNVTK----LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
D L I + +G Y V + + ++ ITV E
Sbjct: 231 DFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVE 280
Score = 90.1 bits (223), Expect = 4e-20
Identities = 46/326 (14%), Positives = 83/326 (25%), Gaps = 59/326 (18%)
Query: 214 IVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDN--VTKLVIKQT 271
+ P L++ ST L T + + V W + +E + + +D + L +
Sbjct: 3 VTPPGPELVLNVSSTFVL----TCSGSAPVVWERMSQEPPQEMAKAQDGTFSSVLTLTNL 58
Query: 272 TKKTTGKYEIRVVNEAGEAR-TSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVV 330
T TG+Y + G + I V + + + F + +
Sbjct: 59 TGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGF----LPNDAEELFIFLTEITEIT 114
Query: 331 ----VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNP 386
VT P +VT + + D Y C
Sbjct: 115 IPCRVTD-PQLVVTLHEKKGD----VALPVPYDHQ------RGFSGIFEDRSYICKTTIG 163
Query: 387 VGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE 446
E + A + S + + TL V G + W
Sbjct: 164 DREVDSDAYYVYRLQVSS---INVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTY--- 217
Query: 447 EILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKIT 506
P+ E+ V+ + M RS+L I
Sbjct: 218 ---------------------------PRKESGRLVEPVTDFLLDMPYHIRSILHIPSAE 250
Query: 507 RDQIGDVTCRAENVAGSVTCTATLSL 532
+ G TC +++
Sbjct: 251 LEDSGTYTCNVTESVNDHQDEKAINI 276
Score = 79.7 bits (196), Expect = 1e-16
Identities = 34/298 (11%), Positives = 75/298 (25%), Gaps = 33/298 (11%)
Query: 109 TKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSIS 168
T P ++ S L T + + W R +E + + ++ VL+++
Sbjct: 4 TPPGPELVLNVSSTFVL----TCSGSAPVVWERMSQEPPQEMAKAQDGTFSS---VLTLT 56
Query: 169 EATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDST 228
T D Y ++ G + + + + + +
Sbjct: 57 NLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDA----EELFIFLTEITE 112
Query: 229 VTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAG 288
+T+ T P V + ++ + Y +
Sbjct: 113 ITIPCRVTD-PQLVVTLHEKKGDVALPVPYDHQ------RGFSGIFEDRSYICKTTIGDR 165
Query: 289 EARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVV----VTGKPTPLVTWSHD 344
E + + + + V + E + V G W++
Sbjct: 166 EVDSDAYYVYRLQVSS-----INVSVNAVQ--TVVRQGENITLMCIVIGNEVVNFEWTYP 218
Query: 345 GTPMKEGKEVTIYQDTDGLCK----LAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398
E D L I E++G Y+C V + + +
Sbjct: 219 RKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276
Score = 68.2 bits (166), Expect = 8e-13
Identities = 23/104 (22%), Positives = 32/104 (30%), Gaps = 7/104 (6%)
Query: 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTEL-----HATEHYLITT 57
+V + V Q + C V G+ + W E T+ L
Sbjct: 178 QVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMP 237
Query: 58 VESVSTLEIINPTKEDIGVYTCKATNIGGVATCSA--NLIVLEK 99
S L I + ED G YTC T N+ V+E
Sbjct: 238 YHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVES 281
Score = 55.9 bits (134), Expect = 1e-08
Identities = 28/251 (11%), Positives = 58/251 (23%), Gaps = 54/251 (21%)
Query: 327 EPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNP 386
V+T + V W + E+ QD L ++ + + G Y CT +
Sbjct: 16 STFVLTCSGSAPVVWERMSQEPPQ--EMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDS 73
Query: 387 VGEAVA-AATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGK 445
G L + + + + + T+ VT P + + K
Sbjct: 74 RGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHEKK 132
Query: 446 EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKI 505
++ + + ++ Y
Sbjct: 133 GDVALPVPYD-----------HQRGFSGIFEDRSY------------------------- 156
Query: 506 TRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFT 565
C+ V A + S V G+++
Sbjct: 157 --------ICKTTIGDREVDSDAYY------VYRLQVSSINVSVNAVQTVVRQGENITLM 202
Query: 566 AQVGYSERLEI 576
V +E +
Sbjct: 203 CIVIGNEVVNF 213
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 100 bits (252), Expect = 6e-26
Identities = 18/92 (19%), Positives = 30/92 (32%)
Query: 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
L P+ + + + G P PT TW + L+ S +++
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSI 60
Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
+ + D G Y K N G +IV
Sbjct: 61 FFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 88.1 bits (219), Expect = 2e-21
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLV 267
P I+ + + + T LE ++ G P P W ++ K + T +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 268 IKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
+ +G Y+++V NE GE V +
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 83.1 bits (206), Expect = 1e-19
Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 2/92 (2%)
Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 164
PK + + +A L+ G P P+ W G ++
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKS--STTS 59
Query: 165 LSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
+ A D Y +K N G E ++
Sbjct: 60 IFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
Score = 77.7 bits (192), Expect = 7e-18
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Query: 329 VVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
V G P P TW+ + E+ + + ++G Y N +G
Sbjct: 24 VDFIGAPDPTATWTVGDSGAALAPELLV-DAKSSTTSIFFPSAKRADSGNYKLKVKNELG 82
Query: 389 EAVAAATLAVE 399
E A + V+
Sbjct: 83 EDEAIFEVIVQ 93
Score = 73.5 bits (181), Expect = 2e-16
Identities = 14/124 (11%), Positives = 25/124 (20%), Gaps = 35/124 (28%)
Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466
PK + + +A L+ G P P+ W G ++
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKS--STTS 59
Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC 526
+ A D Y + +N G
Sbjct: 60 IFFPSAKRADSGNY---------------------------------KLKVKNELGEDEA 86
Query: 527 TATL 530
+
Sbjct: 87 IFEV 90
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 100 bits (251), Expect = 9e-26
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
AP F ++ + Q + C V G P+P +TW +G + V+ L
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCE---AGVAELH 67
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIV 96
I + ED G YTC A N G +CSA + V
Sbjct: 68 IQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 89.3 bits (222), Expect = 8e-22
Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 5/92 (5%)
Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
AP F+ LK L+ +V G P P I W + I G
Sbjct: 10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC-----EAGVA 64
Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANL 195
L I +A P+D Y+ A N G+ C A +
Sbjct: 65 ELHIQDALPEDHGTYTCLAENALGQVSCSAWV 96
Score = 83.1 bits (206), Expect = 1e-19
Identities = 23/91 (25%), Positives = 36/91 (39%)
Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLV 267
+ AP+ L+ V + L+ GTP P + W NG+ I + V +L
Sbjct: 8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELH 67
Query: 268 IKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
I+ + G Y N G+ S VT+
Sbjct: 68 IQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 83.1 bits (206), Expect = 1e-19
Identities = 30/140 (21%), Positives = 44/140 (31%), Gaps = 44/140 (31%)
Query: 392 AAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPD 451
++ + +E AP F+ LK L+ +V G P P I W + I
Sbjct: 2 SSGSSGMEV------APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA 55
Query: 452 NGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIG 511
G L I +A P+D Y
Sbjct: 56 RSTC-----EAGVAELHIQDALPEDHGTY------------------------------- 79
Query: 512 DVTCRAENVAGSVTCTATLS 531
TC AEN G V+C+A ++
Sbjct: 80 --TCLAENALGQVSCSAWVT 97
Score = 78.9 bits (195), Expect = 4e-18
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEA 390
V G P P +TW +G P++ + G+ +L I + PE+ G Y+C A N +G+
Sbjct: 35 VRGTPVPRITWLLNGQPIQYAR----STCEAGVAELHIQDALPEDHGTYTCLAENALGQV 90
Query: 391 VAAATLAV 398
+A + V
Sbjct: 91 SCSAWVTV 98
Score = 31.5 bits (72), Expect = 0.18
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 536 SEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
S + + +P F + V++GQ + V
Sbjct: 3 SGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSV 35
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 99.7 bits (249), Expect = 2e-25
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEH--YLITTVESVS 62
+ P+ + + + C G P P +TW G ++H+ E + I + ++
Sbjct: 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLT 63
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
TL I++ K+D G+YT N G + + N+ +
Sbjct: 64 TLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 93.9 bits (234), Expect = 2e-23
Identities = 22/93 (23%), Positives = 32/93 (34%)
Query: 103 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 162
G PK + + T+ TG PTP + W G +I T
Sbjct: 3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 62
Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANL 195
L I + QD +Y++ N FG N+
Sbjct: 63 TTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNI 95
Score = 86.2 bits (214), Expect = 9e-21
Identities = 23/127 (18%), Positives = 32/127 (25%), Gaps = 33/127 (25%)
Query: 405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 464
G PK + + T+ TG PTP + W G +I T
Sbjct: 3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 62
Query: 465 CVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV 524
L I + QD +Y T N GS
Sbjct: 63 TTLIIMDVQKQDGGLY---------------------------------TLSLGNEFGSD 89
Query: 525 TCTATLS 531
+ T +
Sbjct: 90 SATVNIH 96
Score = 84.7 bits (210), Expect = 4e-20
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVTK 265
P I + + + +T+ +TG PTPEV W G++I S++ IE D++T
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 64
Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
L+I K+ G Y + + NE G + ++ I
Sbjct: 65 LIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIR 98
Score = 80.8 bits (200), Expect = 7e-19
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTI-YQDTDGLCKLA 367
D+ ++ + TG+PTP VTWS G + ++ ++TD L L
Sbjct: 14 DISIDEGKVLTVA-------CAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLI 66
Query: 368 ISEVFPENAGLYSCTAVNPVGEAVAAATLAVE 399
I +V ++ GLY+ + N G A + +
Sbjct: 67 IMDVQKQDGGLYTLSLGNEFGSDSATVNIHIR 98
Score = 28.0 bits (63), Expect = 3.1
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 545 PRFIKTPETAKVMDGQSVLFTAQV 568
P+ P + +G+ +
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAF 29
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 98.9 bits (247), Expect = 3e-25
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPT-MTWQKDGTELHATEHYLITTVESVSTL 64
+I V + + CK+E + T +TW +L +E Y IT + V+ L
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAIL 60
Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEE 101
+ + TK D G Y CK N G + A L V E
Sbjct: 61 YVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVRE 97
Score = 84.3 bits (209), Expect = 5e-20
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 3/93 (3%)
Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPS-ICWYRGKEEILPDNGHTMEFNPTTGEC 163
+ + + E + + + WY G ++ + + + G
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYED--GVA 58
Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
+L + + T D+ Y K VN +G A L
Sbjct: 59 ILYVKDITKLDDGTYRCKVVNDYGEDSSYAELF 91
Score = 80.4 bits (199), Expect = 9e-19
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 19/106 (17%)
Query: 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIY 357
E V ++E++ + VTW ++ ++ I
Sbjct: 11 AVGEEGGHVKYVCKIENYD------------------QSTQVTWYFGVRQLENSEKYEIT 52
Query: 358 QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEE 403
+ DG+ L + ++ + G Y C VN GE + A L V+ E
Sbjct: 53 YE-DGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVRE 97
Score = 73.1 bits (180), Expect = 3e-16
Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTP-EVKWFKNGKEIVSKD---IETKDNVTKL 266
+ + + + V + +V W+ +++ + + I +D V L
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAIL 60
Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
+K TK G Y +VVN+ GE + + +
Sbjct: 61 YVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 72.0 bits (177), Expect = 9e-16
Identities = 14/126 (11%), Positives = 31/126 (24%), Gaps = 36/126 (28%)
Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPS-ICWYRGKEEILPDNGHTMEFNPTTGEC 465
+ + + E + + + WY G ++ + + + G
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYED--GVA 58
Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
+L + + T D+ Y C+ N G +
Sbjct: 59 ILYVKDITKLDDGTY---------------------------------RCKVVNDYGEDS 85
Query: 526 CTATLS 531
A L
Sbjct: 86 SYAELF 91
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 104 bits (259), Expect = 2e-24
Identities = 49/417 (11%), Positives = 108/417 (25%), Gaps = 88/417 (21%)
Query: 14 QPVVSHQE-QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITT--------------- 57
+ VV ++ TC W+ T
Sbjct: 1 KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRS 60
Query: 58 --VESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPV 115
+ L I N ED Y C+ + L+V + +
Sbjct: 61 LWDQGNFPLIIKNLKIEDSDTYICEVED----QKEEVQLLVFGLTAN--------SDTHL 108
Query: 116 IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDE 175
+ TL +PS+ + + + LS+S+ QD
Sbjct: 109 LQG--QSLTLTLESPPGSSPSVQCRSPRGKNIQGGK------------TLSVSQLELQDS 154
Query: 176 AVYSVKAVNTFGRAECRANLV---LRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLE 232
++ + + E + ++V +KA++I + E PL + + L
Sbjct: 155 GTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELW 214
Query: 233 AEYTGTPTP-----------EVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEI 281
+ + EV + ++ + + L +G +
Sbjct: 215 WQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTL 274
Query: 282 RVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTW 341
+ + G+ ++ + A + V + P +++
Sbjct: 275 ALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTS-----------------PKLMLSL 317
Query: 342 SHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398
+ K K V AG++ C + G+ + + + V
Sbjct: 318 KLENKEAKVSKREKAVW------------VLNPEAGMWQCLLSDS-GQVLLESNIKV 361
Score = 85.2 bits (210), Expect = 4e-18
Identities = 47/382 (12%), Positives = 115/382 (30%), Gaps = 72/382 (18%)
Query: 227 STVTLEAEYTGTPTPEVKWFKNGKEIV--------------------SKDIETKDNVTKL 266
TV L + + + W + + + S+ L
Sbjct: 10 DTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 69
Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHS 326
+IK + + Y V ++ E + + + T D + + +
Sbjct: 70 IIKNLKIEDSDTYICEVEDQKEEVQL---LVFGL----TANSDTHLLQGQSLTLT----- 117
Query: 327 EPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNP 386
+ +P V +G + L++S++ +++G ++CT +
Sbjct: 118 --LESPPGSSPSVQCRSPRGKNIQGGKT-----------LSVSQLELQDSGTWTCTVLQN 164
Query: 387 VGEAVAAATLAVEEKEES--------GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPS 438
+ + V +++ GE +F+ PL + + L +
Sbjct: 165 QKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSK 224
Query: 439 IC----WYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQ--DEAVYSVKASSTETKIM 492
+ + L++ +A PQ ++ + K+
Sbjct: 225 SWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLH 284
Query: 493 TDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPE 552
+ N V+ +++ + ++TC V G + LSL E++ V + + +
Sbjct: 285 QEVNLVVMRATQLQK----NLTCE---VWGPTSPKLMLSLKLENKEAKVSKREKAVWVLN 337
Query: 553 TA------KVMDGQSVLFTAQV 568
+ D VL + +
Sbjct: 338 PEAGMWQCLLSDSGQVLLESNI 359
Score = 45.9 bits (108), Expect = 2e-05
Identities = 21/206 (10%), Positives = 44/206 (21%), Gaps = 69/206 (33%)
Query: 417 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTM---------------EFNPT 461
V+ + L T + + + W + + N +
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63
Query: 462 TGECVLSISEATPQDEAVYSVKASSTETKI------------------------------ 491
G L I +D Y + + ++
Sbjct: 64 QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPG 123
Query: 492 -------MTDGNR-----SVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVT 539
+ + L +S++ G TC V + +
Sbjct: 124 SSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV------- 176
Query: 540 DVMESPRFIKTPETAKVMDGQSVLFT 565
F K +G+ V F+
Sbjct: 177 -----LAFQKASSIVYKKEGEQVEFS 197
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 101 bits (253), Expect = 2e-24
Identities = 42/298 (14%), Positives = 85/298 (28%), Gaps = 49/298 (16%)
Query: 14 QPVVS--------HQEQPALFTCKVEGHPLP-TMTWQKDGTELHATEHYLITTVESVSTL 64
+ V++ QE+ C+V P + W +GT S +
Sbjct: 1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQ----------TSTPSY 50
Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPAT 124
I + + D G Y C+ G L + + V E +
Sbjct: 51 RITSASVNDSGEYRCQRGLSGRSD--PIQLEIHR------GWLLLQVSSRVFTEGEP-LA 101
Query: 125 LKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAV 183
L+ + ++ +YR NG +F L+I + Y +
Sbjct: 102 LRCHAWKDKLVYNVLYYR--------NGKAFKFFHWNSN--LTILKTNISHNGTYHCSGM 151
Query: 184 NTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEV 243
++ ++ L ++ + + + VTL E
Sbjct: 152 GKHRYTSAGISVTVK---------ELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPG 202
Query: 244 KWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART-SGSVTITV 300
+ SK + ++ ++ I ++ +G Y E G S + + V
Sbjct: 203 LQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQV 260
Score = 95.8 bits (238), Expect = 3e-22
Identities = 50/321 (15%), Positives = 86/321 (26%), Gaps = 79/321 (24%)
Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPE-VKWFKNGKEIVSKDIETKDNVTKLVIKQ 270
I + V ++ TVTL E P +WF NG + I
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST-------PSYRITS 54
Query: 271 TTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVV 330
+ +G+Y + S + + + + S + F EP+
Sbjct: 55 ASVNDSGEYRCQRGLSGR----SDPIQLEIHRGWLL---------LQVSSRVFTEGEPLA 101
Query: 331 VT-----GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
+ K V + +G K + + L I + + G Y C+ +
Sbjct: 102 LRCHAWKDKLVYNVLYYRNGKAFK-------FFHWNS--NLTILKTNISHNGTYHCSGMG 152
Query: 386 PVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP-TPSICWYRG 444
A ++ V+E AP + + E + TL P + Y
Sbjct: 153 KHRYTSAGISVTVKELF---PAPVLNASVTSPLLEG-NLVTLSCETKLLLQRPGLQLYFS 208
Query: 445 KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK 504
T+ T+ E I A +D +Y
Sbjct: 209 FY----MGSKTLRGRNTSSE--YQILTARREDSGLY------------------------ 238
Query: 505 ITRDQIGDVTCRAENVAGSVT 525
C A G+V
Sbjct: 239 ---------WCEAATEDGNVL 250
Score = 85.4 bits (211), Expect = 9e-19
Identities = 30/196 (15%), Positives = 56/196 (28%), Gaps = 20/196 (10%)
Query: 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGH-PLPTMTWQKDGTELHATEHYLITTVESV 61
E+ + ++ V + +P C + + + ++G
Sbjct: 79 EIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFK--------FFHWN 130
Query: 62 STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQS 121
S L I+ G Y C + ++ V E AP + + E +
Sbjct: 131 SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELF---PAPVLNASVTSPLLEG-N 186
Query: 122 PATLKATVTGRP-TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 180
TL P + Y T+ T+ E I A +D +Y
Sbjct: 187 LVTLSCETKLLLQRPGLQLYFSFY----MGSKTLRGRNTSSE--YQILTARREDSGLYWC 240
Query: 181 KAVNTFGRAECRANLV 196
+A G R+ +
Sbjct: 241 EAATEDGNVLKRSPEL 256
Score = 83.0 bits (205), Expect = 6e-18
Identities = 41/276 (14%), Positives = 78/276 (28%), Gaps = 55/276 (19%)
Query: 122 PATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 180
TL V P S W+ I+ A+ D Y
Sbjct: 18 TVTLHCEVLHLPGSSSTQWFLNGTATQTSTPS------------YRITSASVNDSGEY-- 63
Query: 181 KAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAE-YTGTP 239
C+ L R + + +++ + + + + L +
Sbjct: 64 ---------RCQRGLSGRSDPI--QLEIHRGWLLLQV-SSRVFTEGEPLALRCHAWKDKL 111
Query: 240 TPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
V +++NGK + + L I +T G Y + + TS +++T
Sbjct: 112 VYNVLYYRNGKAF-----KFFHWNSNLTILKTNISHNGTYHCSGMGKHRY--TSAGISVT 164
Query: 300 VAEAETVMMDVRVESHPTASFQWFIHSEPVVVT-------GKPTPLVTWSHDGTPMKEGK 352
V E + + P + V ++ +P + +S K
Sbjct: 165 VKELFPAPVLNASVTSPL------LEGNLVTLSCETKLLLQRPGLQLYFS----FYMGSK 214
Query: 353 EVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
+ + I E++GLY C A G
Sbjct: 215 TLRGRNTSSEYQ---ILTARREDSGLYWCEAATEDG 247
Score = 61.1 bits (148), Expect = 2e-10
Identities = 24/237 (10%), Positives = 52/237 (21%), Gaps = 72/237 (30%)
Query: 331 VTGKPTPL-VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
V P W +GT + I+ ++G Y C
Sbjct: 25 VLHLPGSSSTQWFLNGTATQTSTP-----------SYRITSASVNDSGEYRCQRGLSGRS 73
Query: 390 AVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEI 448
+ + V E + L+ + ++ +YR
Sbjct: 74 DPIQLEIH--------RGWLLLQVSSRVFTEGEP-LALRCHAWKDKLVYNVLYYR----- 119
Query: 449 LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRD 508
NG +F L+I + Y
Sbjct: 120 ---NGKAFKFFHWNSN--LTILKTNISHNGTY---------------------------- 146
Query: 509 QIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFT 565
C + ++++ + + T+ +++G V +
Sbjct: 147 -----HCSGMGKHRYTSAGISVTVK-------ELFPAPVLNASVTSPLLEGNLVTLS 191
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 102 bits (255), Expect = 5e-24
Identities = 47/334 (14%), Positives = 78/334 (23%), Gaps = 53/334 (15%)
Query: 6 APRFIEKIQPVVSHQE-QPALFTCKVEGHP----LPTMTWQKDGTELHAT---------- 50
P + ++ + + C + +TWQK
Sbjct: 13 DPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGV 72
Query: 51 --------EHYLITTVESVSTLEIINPTKEDIGVYTCKA-TNIGGVATCSANLIVLEKEE 101
+ + T+ + ED GVY C+ T G NL V+ K
Sbjct: 73 SVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAK-- 130
Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATV------TGRPTPSICWYRGKEEILPDNGHTME 155
P + A+ K V G+P + W +
Sbjct: 131 ----PTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNP 186
Query: 156 FNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTI- 214
T + + + + R + L V P +
Sbjct: 187 NGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTL-----------NVQYEPEVT 235
Query: 215 VRPLQALLVPKDSTVTLEAEYTGTPTP-EVKWFKNGKEIVSKDIETKDNVTKLVIKQTTK 273
+ + V L + P E W + N T
Sbjct: 236 IEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQ--NRTLFFKGPINY 293
Query: 274 KTTGKYEIRVVNEAGEARTSGSVTITVAEAETVM 307
G Y N G SG V + + EA +
Sbjct: 294 SLAGTYICEATNPIGT--RSGQVEVNITEAAALE 325
Score = 89.0 bits (220), Expect = 2e-19
Identities = 47/327 (14%), Positives = 83/327 (25%), Gaps = 51/327 (15%)
Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTP----SICWYR----------------GKEE 145
+ + + + L + + W + G
Sbjct: 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV 74
Query: 146 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF-GRAECRANLVLRKATTID 204
+ P P+ + + +S +DE VY + G E + NL +
Sbjct: 75 LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKP--- 131
Query: 205 KPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVT 264
+E V + K T + G P V W K N T
Sbjct: 132 -TNWIEGTQAVLRAKKGQDDKVLVATCTSA-NGKPPSVVSWETRLKGEAEYQEIRNPNGT 189
Query: 265 -----KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTAS 319
+ + + + V + S +T+ V V +E
Sbjct: 190 VTVISRYRLVPSREAHQQSLACIVNYHMDRFKES--LTLNVQYEPEV----TIEGFDG-- 241
Query: 320 FQWFIHSEPV----VVTGKPTPL-VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPE 374
W++ V P W+ + +G E L +
Sbjct: 242 -NWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQ----NRTL--FFKGPINYS 294
Query: 375 NAGLYSCTAVNPVGEAVAAATLAVEEK 401
AG Y C A NP+G + + E
Sbjct: 295 LAGTYICEATNPIGTRSGQVEVNITEA 321
Score = 83.6 bits (206), Expect = 1e-17
Identities = 43/375 (11%), Positives = 89/375 (23%), Gaps = 92/375 (24%)
Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPE----VKWFKNGKEI------------VSK 255
+V+ ++ + V L + V W K+ VS
Sbjct: 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV 74
Query: 256 DIETKDNVT---------KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV 306
++ V + + + + G Y R + +TV T
Sbjct: 75 LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNR-ESQLNLTVMAKPTN 133
Query: 307 MMDVRVESHPTASFQWFIHSEPVVVT-----GKPTPLVTWSHDGTPMKEGKEVTIYQDTD 361
+ + + + +V T GKP +V+W E +E+ T
Sbjct: 134 WI---EGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTV 190
Query: 362 GLC-KLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFT-KPLKPVIA 419
+ + + + +C + + TL V+ P+ T +
Sbjct: 191 TVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQY------EPEVTIEGFDGNWY 244
Query: 420 EAQSPATLKATVTGRPTPS-ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEA 478
+ L P + W +
Sbjct: 245 LQRMDVKLTCKADANPPATEYHWTTLNGSLPKG--------------------------- 277
Query: 479 VYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEV 538
+ NR++ I G C A N G+ + +
Sbjct: 278 -------------VEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEV-------- 316
Query: 539 TDVMESPRFIKTPET 553
++ E+
Sbjct: 317 -NITEAAALEHHHHH 330
Score = 81.7 bits (201), Expect = 4e-17
Identities = 29/225 (12%), Positives = 54/225 (24%), Gaps = 33/225 (14%)
Query: 4 VLAPRFIEKIQPVVSHQE----QPALFTCKV-EGHPLPTMTWQKDGTELHATEHYL--IT 56
+IE Q V+ ++ + + TC G P ++W+ +
Sbjct: 129 AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNG 188
Query: 57 TVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFT-KPLKPV 115
TV +S ++ + C S L V P+ T +
Sbjct: 189 TVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQ------YEPEVTIEGFDGN 242
Query: 116 IAEAQSPATLKATVTGRPTPS-ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 174
+ L P + W NG + +
Sbjct: 243 WYLQRMDVKLTCKADANPPATEYHWTT-------LNGSLPKGVEAQNRTLFFKGPINYSL 295
Query: 175 EAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ 219
Y +A N G + + + EA +
Sbjct: 296 AGTYICEATNPIGTRSGQVEV-----------NITEAAALEHHHH 329
Score = 62.5 bits (151), Expect = 1e-10
Identities = 32/284 (11%), Positives = 60/284 (21%), Gaps = 68/284 (23%)
Query: 297 TITVAEAETVMMDVRV----ESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGK 352
++ V++ S W + G + ++
Sbjct: 23 SMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTN-----GSKQNVAIYNPSMGVSVLAP 77
Query: 353 ---EVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN-PVGEAVAAATLAVEEKEESGEAP 408
V + + + +S + E+ G+Y C P G + L V K P
Sbjct: 78 YRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAK------P 131
Query: 409 KFTKPLKPVIAEAQSPATLKATV------TGRPTPSICWYRGKEEILPDNGHTMEFNPTT 462
+ A+ K V G+P + W + T
Sbjct: 132 TNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVT 191
Query: 463 GECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAG 522
S + + C
Sbjct: 192 V---------------------------------ISRYRLVPSREAHQQSLACIVNYHMD 218
Query: 523 SVTCTATLSLLPESEVTDVMESPRF-IKTPETAKVMDGQSVLFT 565
+ TL +V P I+ + + V T
Sbjct: 219 RFKESLTL---------NVQYEPEVTIEGFDGNWYLQRMDVKLT 253
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 94.4 bits (235), Expect = 1e-23
Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 5/97 (5%)
Query: 6 APRFIEKIQPVVSHQE----QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES- 60
AP + + F C G+P+PTM W K+G E V +
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 63
Query: 61 VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVL 97
+L + + D G YTC N G + +L V+
Sbjct: 64 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
Score = 79.4 bits (196), Expect = 2e-18
Identities = 17/68 (25%), Positives = 26/68 (38%)
Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEA 390
G P P + W +G K+ + Y+ + L + V P + G Y+C N G
Sbjct: 32 AGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI 91
Query: 391 VAAATLAV 398
L V
Sbjct: 92 NHTYHLDV 99
Score = 73.6 bits (181), Expect = 3e-16
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 5/98 (5%)
Query: 102 SGEAPKFTKPLKP----VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFN 157
+ AP +T K A + + G P P++ W + +E + +
Sbjct: 1 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE-HRIGGYK 59
Query: 158 PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANL 195
L + P D+ Y+ N +G +L
Sbjct: 60 VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 97
Score = 73.2 bits (180), Expect = 4e-16
Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 8/97 (8%)
Query: 210 EAPTIVRPLQALL----VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKD 261
AP + VP +TV G P P ++W KNGKE + + ++
Sbjct: 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62
Query: 262 NVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
L+++ G Y V NE G + + +
Sbjct: 63 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 70.2 bits (172), Expect = 4e-15
Identities = 22/134 (16%), Positives = 37/134 (27%), Gaps = 38/134 (28%)
Query: 404 SGEAPKFTKPLKP----VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFN 459
+ AP +T K A + + G P P++ W + +E + +
Sbjct: 1 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE-HRIGGYK 59
Query: 460 PTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAEN 519
L + P D+ Y TC EN
Sbjct: 60 VRNQHWSLIMESVVPSDKGNY---------------------------------TCVVEN 86
Query: 520 VAGSVTCTATLSLL 533
GS+ T L ++
Sbjct: 87 EYGSINHTYHLDVV 100
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 94.0 bits (234), Expect = 2e-23
Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 7/101 (6%)
Query: 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITT-----V 58
V I ++ S V+G+P P + W +G L+ +++
Sbjct: 1 VHFAPTITFLESPTSDHH--WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHT 58
Query: 59 ESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
E L++ NPT + G YT A N G + +
Sbjct: 59 EYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW 99
Score = 71.3 bits (175), Expect = 2e-15
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 4/78 (5%)
Query: 328 PVVVTGKPTPLVTWSHDGTPMKEGKEVTI----YQDTDGLCKLAISEVFPENAGLYSCTA 383
P V G P P + W ++G + E K + T+ L + N G Y+ A
Sbjct: 22 PFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIA 81
Query: 384 VNPVGEAVAAATLAVEEK 401
N G+ +
Sbjct: 82 KNEYGKDEKQISAHFMGW 99
Score = 70.9 bits (174), Expect = 3e-15
Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 6/103 (5%)
Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEF---NPTTG 161
AP T P + + TV G P P++ W+ + + N T
Sbjct: 4 APTITFLESPT---SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTID 204
L + T + Y++ A N +G+ E + + ID
Sbjct: 61 HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGID 103
Score = 68.2 bits (167), Expect = 2e-14
Identities = 21/99 (21%), Positives = 29/99 (29%), Gaps = 11/99 (11%)
Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVS--------KDIET 259
V APTI D + G P P ++WF NG +
Sbjct: 1 VHFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57
Query: 260 KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
+ L + T G Y + NE G+ S
Sbjct: 58 TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96
Score = 62.1 bits (151), Expect = 3e-12
Identities = 21/144 (14%), Positives = 32/144 (22%), Gaps = 48/144 (33%)
Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEF---NPTTG 463
AP T P + + TV G P P++ W+ + + N T
Sbjct: 4 APTITFLESPT---SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60
Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
L + T + Y T A+N G
Sbjct: 61 HGCLQLDNPTHMNNGDY---------------------------------TLIAKNEYGK 87
Query: 524 VTCTATLSLLPESEVTDVMESPRF 547
+ M P
Sbjct: 88 DEKQISA---------HFMGWPGI 102
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 94.5 bits (235), Expect = 2e-23
Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 7/112 (6%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESV---- 61
PR + +P + + V G+P PT+ W +G L ++ + +
Sbjct: 8 PPRVVSLEEPELRLEHC---IEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISE 64
Query: 62 STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLK 113
L PT + G YT A N G A + N L++ + T P+
Sbjct: 65 GCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTPPIT 116
Score = 75.6 bits (186), Expect = 8e-17
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 328 PVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGL---CKLAISEVFPENAGLYSCTAV 384
VV G P P + W H+G P++E K + + +G L ++ N G Y+ A
Sbjct: 26 EFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAK 85
Query: 385 NPVGEAVAAATLAVEEKEESGEAPKFTKPLK 415
NP+G A ++ + T P+
Sbjct: 86 NPLGTANQTINGHFLKEPFPVDEVSPTPPIT 116
Score = 71.0 bits (174), Expect = 4e-15
Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 5/114 (4%)
Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG-- 161
P+ +P + ++ V G P P++ W + + +E+
Sbjct: 7 YPPRVVSLEEPELRL---EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEIS 63
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIV 215
E L ++ T + Y++ A N G A N K P V
Sbjct: 64 EGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTPPITV 117
Score = 67.1 bits (164), Expect = 8e-14
Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 10/101 (9%)
Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEI-------VSKDIETK 260
V P +V + L +E G P P + W NG+ + V E +
Sbjct: 5 VYYPPRVVSLEEPELR---LEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGE 61
Query: 261 DNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA 301
+ L+ + T G Y + N G A + +
Sbjct: 62 ISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 102
Score = 61.4 bits (149), Expect = 8e-12
Identities = 18/130 (13%), Positives = 34/130 (26%), Gaps = 38/130 (29%)
Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG-- 463
P+ +P + ++ V G P P++ W + + +E+
Sbjct: 7 YPPRVVSLEEPELRL---EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEIS 63
Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
E L ++ T + Y T A+N G+
Sbjct: 64 EGCLLFNKPTHYNNGNY---------------------------------TLIAKNPLGT 90
Query: 524 VTCTATLSLL 533
T L
Sbjct: 91 ANQTINGHFL 100
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 93.3 bits (232), Expect = 6e-23
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
P + + + +C G P+PT+ W+KDG + + I +E+ L+
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSR-IKQLEN-GVLQ 65
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKP 111
I D G YTC A+ G AT SA + V E + P+ T P
Sbjct: 66 IRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDP 111
Score = 73.3 bits (180), Expect = 6e-16
Identities = 24/130 (18%), Positives = 35/130 (26%), Gaps = 21/130 (16%)
Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
S P + L TG P P+I W + + + +
Sbjct: 5 SSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV- 63
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQAL 221
L I A D Y+ A G A A + V E V+P
Sbjct: 64 ---LQIRYAKLGDTGRYTCIASTPSGEATWSAYI-----------EVQEFGVPVQP---- 105
Query: 222 LVPKDSTVTL 231
P+ + L
Sbjct: 106 --PRPTDPNL 113
Score = 70.6 bits (173), Expect = 5e-15
Identities = 23/149 (15%), Positives = 34/149 (22%), Gaps = 46/149 (30%)
Query: 404 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
S P + L TG P P+I W + + + +
Sbjct: 5 SSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV- 63
Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
L I A D Y TC A +G
Sbjct: 64 ---LQIRYAKLGDTGRY---------------------------------TCIASTPSGE 87
Query: 524 VTCTATLSLLPESEVTDVMESPRFIKTPE 552
T +A + V E ++ P
Sbjct: 88 ATWSAYIE---------VQEFGVPVQPPR 107
Score = 69.4 bits (170), Expect = 1e-14
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD--IETKDNVTKLV 267
P I + V D T L TG+P P + W K+G + ++D I+ +N L
Sbjct: 7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV-LQ 65
Query: 268 IKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
I+ TG+Y +GEA S + +
Sbjct: 66 IRYAKLGDTGRYTCIASTPSGEATWSAYIEVQE 98
Score = 67.1 bits (164), Expect = 8e-14
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 331 VTGKPTPLVTWSHDGTPMKEGKE-VTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
TG P P + W DG + + ++ L I + G Y+C A P GE
Sbjct: 32 ATGSPVPTILWRKDGVLVSTQDSRIKQLENGV----LQIRYAKLGDTGRYTCIASTPSGE 87
Query: 390 AVAAATLAVEEKEESGEAPKFTKP 413
A +A + V+E + P+ T P
Sbjct: 88 ATWSAYIEVQEFGVPVQPPRPTDP 111
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 92.5 bits (230), Expect = 7e-23
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 1 MAEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES 60
P ++ + AL CK G PLP ++W K+G + T++
Sbjct: 3 SGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRA--TIQE 60
Query: 61 VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
TL+I N D G YTC AT+ G + SA L V E
Sbjct: 61 QGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98
Score = 70.9 bits (174), Expect = 2e-15
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD--IETKDNVTKLV 267
P I++ + D T L+ + TG P P + W K G +D ++ T L
Sbjct: 7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGT-LQ 65
Query: 268 IKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA 301
IK TG Y + +GE S + +T +
Sbjct: 66 IKNLRISDTGTYTCVATSSSGETSWSAVLDVTES 99
Score = 65.9 bits (161), Expect = 1e-13
Identities = 19/94 (20%), Positives = 26/94 (27%), Gaps = 4/94 (4%)
Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
S P + A LK TG P P I W + +
Sbjct: 5 SSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQE---- 60
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANL 195
+ L I D Y+ A ++ G A L
Sbjct: 61 QGTLQIKNLRISDTGTYTCVATSSSGETSWSAVL 94
Score = 63.6 bits (155), Expect = 1e-12
Identities = 21/128 (16%), Positives = 29/128 (22%), Gaps = 37/128 (28%)
Query: 404 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
S P + A LK TG P P I W + +
Sbjct: 5 SSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQE---- 60
Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
+ L I D Y TC A + +G
Sbjct: 61 QGTLQIKNLRISDTGTY---------------------------------TCVATSSSGE 87
Query: 524 VTCTATLS 531
+ +A L
Sbjct: 88 TSWSAVLD 95
Score = 63.6 bits (155), Expect = 1e-12
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 331 VTGKPTPLVTWSHDGTP-MKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
TG P P+++W +G TI + L I + + G Y+C A + GE
Sbjct: 32 ATGDPLPVISWLKEGFTFPGRDPRATIQEQGT----LQIKNLRISDTGTYTCVATSSSGE 87
Query: 390 AVAAATLAVEE 400
+A L V E
Sbjct: 88 TSWSAVLDVTE 98
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 97.9 bits (243), Expect = 7e-23
Identities = 46/312 (14%), Positives = 76/312 (24%), Gaps = 42/312 (13%)
Query: 2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESV 61
E P ++ TC + W E+
Sbjct: 8 GEPSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNEMVEN-------KK 56
Query: 62 STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQS 121
+ G YTC +N T S + V + K P+ + S
Sbjct: 57 NEWIQEKAEATRTGTYTCSNSN---GLTSSIYVFVRDP------AKLFLVGLPLFGKEDS 107
Query: 122 PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
A ++ +T + LP + NP G + +
Sbjct: 108 DALVRCPLTDPQVSQYSLIECDGKSLPTDLT-FVPNPKAG--ITIKNVKRAYHRLCVRCA 164
Query: 182 AVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP 241
A G L+ I P + P + L+ K T T+ T
Sbjct: 165 AQRD-GTWLHSDKFTLKVREAIKAI-----PVVSVPETSHLLKKGDTFTVVCTIKDVSTS 218
Query: 242 -EVKWFKNGKEIVSKDIETKDNVTK----------LVIKQTTKKTTGKYEIRVVNEAGEA 290
W K + ++ + L I +G + N G A
Sbjct: 219 VNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSA 278
Query: 291 RTSGSVTITVAE 302
+ T+ V E
Sbjct: 279 NV--TTTLKVVE 288
Score = 96.0 bits (238), Expect = 4e-22
Identities = 45/313 (14%), Positives = 78/313 (24%), Gaps = 43/313 (13%)
Query: 101 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160
P +I EA +L + W
Sbjct: 8 GEPSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNEMVENKKN------ 57
Query: 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQA 220
+A Y+ C + L + + V + +
Sbjct: 58 ---EWIQEKAEATRTGTYT-----------CSNSNGLTSSIYVF---VRDPAKLFLVGLP 100
Query: 221 LLVPKDSTVTLEAEYTGTPTPEVKWFK-NGKEIVSKDIETKDNVTKLVIKQTTKKTTGKY 279
L +DS + T + + +GK + + + + IK +
Sbjct: 101 LFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLC 160
Query: 280 EIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVV----VTGKP 335
G S T+ V EA + V V + + +
Sbjct: 161 VRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKK----GDTFTVVCTIKDVS 216
Query: 336 TPL-VTWSHDGTPMKEGKEVTIYQDTDGLCK------LAISEVFPENAGLYSCTAVNPVG 388
T + W + +V G L IS +++G++ C A N G
Sbjct: 217 TSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFG 276
Query: 389 EAVAAATLAVEEK 401
A TL V EK
Sbjct: 277 SANVTTTLKVVEK 289
Score = 82.9 bits (204), Expect = 1e-17
Identities = 48/330 (14%), Positives = 89/330 (26%), Gaps = 57/330 (17%)
Query: 206 PRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK 265
P P+I L+V T++L V+W + + +
Sbjct: 7 PGEPSPPSIHPAQSELIVEAGDTLSLTCIDPDF----VRWTFKTYFNEMVE----NKKNE 58
Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV---MMDVRVESHPTASFQW 322
+ ++ TG Y N S+ + V + + + + + A
Sbjct: 59 WIQEKAEATRTGTYTCSNSNGLTS-----SIYVFVRDPAKLFLVGLPLFGKEDSDALV-- 111
Query: 323 FIHSEPVVVTGKPTPLVTWSH-DGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSC 381
+T + DG + + G+ + + C
Sbjct: 112 -----RCPLTDPQVSQYSLIECDGKSLPTDLTF-VPNPKAGI--TIKNVKRAYHRLCVRC 163
Query: 382 TAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP-SIC 440
A G + + ++ +E P + P + + T+ T+ T +
Sbjct: 164 AAQRD-GTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSM 222
Query: 441 WYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL 500
W + PQ + + VK +S + L
Sbjct: 223 WLKM----------------------------NPQPQHIAQVKHNSWHRGDFNYERQETL 254
Query: 501 LISKITRDQIGDVTCRAENVAGSVTCTATL 530
IS D G C A N GS T TL
Sbjct: 255 TISSARVDDSGVFMCYANNTFGSANVTTTL 284
Score = 69.0 bits (168), Expect = 4e-13
Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 8/101 (7%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLP-TMTWQKDGTEL-------HATEHYLITTV 58
P + + C ++ W K + H + H
Sbjct: 189 PVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNY 248
Query: 59 ESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
E TL I + +D GV+ C A N G A + L V+EK
Sbjct: 249 ERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEK 289
Score = 65.1 bits (158), Expect = 8e-12
Identities = 23/240 (9%), Positives = 61/240 (25%), Gaps = 59/240 (24%)
Query: 327 EPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNP 386
+ + +T V W+ + + + + G Y+C+ N
Sbjct: 28 DTLSLTCIDPDFVRWTFKTYFNEMVENKKN--------EWIQEKAEATRTGTYTCSNSNG 79
Query: 387 VGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE 446
+ ++ + V + K P+ + S A ++ +T
Sbjct: 80 LTSSI---YVFVRDP------AKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDG 130
Query: 447 EILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKIT 506
+ LP + + + + + +
Sbjct: 131 KSLPTDLT------------------------------------FVPNPKAGITIKNVKR 154
Query: 507 RDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMES-PRFIKTPETAKVMDGQSVLFT 565
V C A+ G+ + +L V + +++ P + + G +
Sbjct: 155 AYHRLCVRCAAQR-DGTWLHSDKFTLK----VREAIKAIPVVSVPETSHLLKKGDTFTVV 209
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 95.9 bits (238), Expect = 2e-22
Identities = 43/300 (14%), Positives = 79/300 (26%), Gaps = 43/300 (14%)
Query: 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGH---PLPTMTWQKDGTELHATEHYLITTVES 60
VL + + P V + C ++G + L+ T Y + +
Sbjct: 1 VLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSA 60
Query: 61 VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ 120
+++ + E TC + + P L
Sbjct: 61 KASV-SVTAEDEGTQRLTCAVILGNQSQETLQTVTIY------SFPAPNVILTKPEVSEG 113
Query: 121 SPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 180
+ T+ P + + L L + + +S
Sbjct: 114 TEVTV--KCEAHPRAKVTLNGVPAQPLGPRAQ------------LLLKATPEDNGRSFSC 159
Query: 181 KAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPL--QALLVPKDSTVTLEAEYTGT 238
A ++ K T + RVL P + P++S T + G
Sbjct: 160 SATLEVA------GQLIHKNQTR-ELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGN 212
Query: 239 PTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
P PE+K K+G + T+ G Y R + GE +V +
Sbjct: 213 PLPELKCLKDGTFPLPIG----------ESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 262
Score = 77.4 bits (190), Expect = 5e-16
Identities = 40/291 (13%), Positives = 82/291 (28%), Gaps = 44/291 (15%)
Query: 114 PVIAEAQSPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATP 172
P + E + T+ ++ G P + + + T + + + +S++ A
Sbjct: 12 PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVT-AED 70
Query: 173 QDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLE 232
+ + + E + + P L V + + VT++
Sbjct: 71 EGTQRLTCAVILGNQSQETLQTV-----------TIYSFPAPNVILTKPEVSEGTEVTVK 119
Query: 233 AEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART 292
E P +V + + + L++K T + + E
Sbjct: 120 CE--AHPRAKVTLNGVPAQPLGPRAQ-------LLLKATPEDNGRSFSCSATLEVAGQLI 170
Query: 293 SGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVV----VTGKPTPLVTWSHDGTPM 348
+ T + V+ R++ + + G P P + DGT
Sbjct: 171 HKNQTREL----RVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 226
Query: 349 KEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVE 399
L V + G Y C A + GE T+ V
Sbjct: 227 --------------LPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 263
Score = 67.4 bits (164), Expect = 1e-12
Identities = 51/327 (15%), Positives = 82/327 (25%), Gaps = 75/327 (22%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTPEVKWFKNGKEIVSKDIETKDNV--TKL 266
P +V P + L V TV + +V + + D+
Sbjct: 5 TPPQLVSP-RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKAS 63
Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHS 326
V + T + V+ T +VTI A V + + +
Sbjct: 64 VSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNV---ILTKPEVSEG------- 113
Query: 327 EPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNP 386
V V + P + +G P Q +L + +N +SC+A
Sbjct: 114 TEVTVKCEAHPRAKVTLNGVPA---------QPLGPRAQLLLKATPEDNGRSFSCSATLE 164
Query: 387 VGEAVAAATLAVEEKEESGEAPKFTKPLKP--VIAEAQSPATLKATVTGRPTPSICWYRG 444
V + E P+ + P S T G P P + +
Sbjct: 165 VAGQLIHKNQTREL--RVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKD 222
Query: 445 KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK 504
LP
Sbjct: 223 GTFPLPIG------------------------------------------------ESVT 234
Query: 505 ITRDQIGDVTCRAENVAGSVTCTATLS 531
+TRD G CRA + G VT T++
Sbjct: 235 VTRDLEGTYLCRARSTQGEVTREVTVN 261
Score = 62.0 bits (150), Expect = 8e-11
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 15/94 (15%)
Query: 6 APRFIEKIQP--VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVST 63
PR E+ P + C+ G+PLP + KDGT +
Sbjct: 183 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP-------------LPI 229
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIVL 97
E + T++ G Y C+A + G T + VL
Sbjct: 230 GESVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 263
Score = 47.4 bits (112), Expect = 6e-06
Identities = 23/234 (9%), Positives = 42/234 (17%), Gaps = 62/234 (26%)
Query: 334 KPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAA 393
V + + VT D+ E +C +
Sbjct: 33 VSEAQVHLALGDQRLNP--TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETL 90
Query: 394 ATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNG 453
T+ + P L + T+ P + + L
Sbjct: 91 QTVTIYS------FPAPNVILTKPEVSEGTEVTV--KCEAHPRAKVTLNGVPAQPL---- 138
Query: 454 HTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDV 513
G R+ LL+ D
Sbjct: 139 -----------------------------------------GPRAQLLLKATPEDNGRSF 157
Query: 514 TCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIK--TPETAKVMDGQSVLFT 565
+C A ++ V+ PR + P +
Sbjct: 158 SCSATLEVAGQLIHKN-----QTRELRVLYGPRLDERDCPGNWTWPENSQQTPM 206
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 90.9 bits (226), Expect = 2e-22
Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
+ +++ + H C++ ++ W +DG +L + IT +E
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITG----EEVE 57
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESG 103
+ + D G+Y C ++ G T ++ V + SG
Sbjct: 58 VQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSG 95
Score = 68.2 bits (167), Expect = 2e-14
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEA 390
+ + W DG + E I + + + + P ++GLY+C +P G
Sbjct: 27 LRDDV-QSINWLRDGVQLAESNRTRITGEE-----VEVQDSVPADSGLYACVTSSPSGSD 80
Query: 391 VAAATLAVEEKEESG 405
++ V + SG
Sbjct: 81 TTYFSVNVSDALPSG 95
Score = 60.1 bits (146), Expect = 1e-11
Identities = 11/93 (11%), Positives = 29/93 (31%), Gaps = 7/93 (7%)
Query: 103 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 162
G + ++ + L+ + SI W R ++ N +
Sbjct: 1 GSSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRI------TG 53
Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANL 195
+ + ++ P D +Y+ + G ++
Sbjct: 54 EEVEVQDSVPADSGLYACVTSSPSGSDTTYFSV 86
Score = 57.8 bits (140), Expect = 9e-11
Identities = 12/89 (13%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQ 270
+ + +++ LV + L + W ++G ++ + T+ ++ ++
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESN-RTRITGEEVEVQD 60
Query: 271 TTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
+ +G Y + +G T SV ++
Sbjct: 61 SVPADSGLYACVTSSPSGSDTTYFSVNVS 89
Score = 55.9 bits (135), Expect = 4e-10
Identities = 17/141 (12%), Positives = 38/141 (26%), Gaps = 46/141 (32%)
Query: 405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 464
G + ++ + L+ + SI W R ++ N +
Sbjct: 1 GSSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRI------TG 53
Query: 465 CVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV 524
+ + ++ P D +Y C + +GS
Sbjct: 54 EEVEVQDSVPADSGLY---------------------------------ACVTSSPSGSD 80
Query: 525 TCTATLSLLPESEVTDVMESP 545
T +++ V+D + S
Sbjct: 81 TTYFSVN------VSDALPSG 95
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 89.7 bits (223), Expect = 7e-22
Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 11/110 (10%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
RF + ++ + + A C++ + + W+K L Y + + L+
Sbjct: 8 PARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRCELQ 65
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPV 115
I + + D G Y+C SA L V +FT+ P
Sbjct: 66 IHDLSVADAGEYSCMCGQ----ERTSATLTVRALP-----ARFTEGSGPS 106
Score = 68.9 bits (169), Expect = 1e-14
Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 9/107 (8%)
Query: 101 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160
S +FT+ LK A + ATL+ ++ + W +G E + ++++ + T
Sbjct: 4 GSSGPARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTR 61
Query: 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANL-VLRKATTIDKP 206
C L I + + D YS G+ A L V +
Sbjct: 62 --CELQIHDLSVADAGEYSCMC----GQERTSATLTVRALPARFTEG 102
Score = 68.6 bits (168), Expect = 2e-14
Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 19/111 (17%)
Query: 307 MMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKL 366
+ TA+ Q ++ V W +++G ++ QD C+L
Sbjct: 15 LKTKEASEGATATLQ-------CELSKVAP--VEWKKGPETLRDGGRYSLKQD-GTRCEL 64
Query: 367 AISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPV 417
I ++ +AG YSC G+ +ATL V +FT+ P
Sbjct: 65 QIHDLSVADAGEYSCMC----GQERTSATLTVRALP-----ARFTEGSGPS 106
Score = 65.5 bits (160), Expect = 2e-13
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 9/98 (9%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKL 266
+ L+ + +T TL+ E + V+W K + + ++ +L
Sbjct: 7 GPARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRCEL 64
Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAE 304
I + G+Y G+ RTS ++T+ A
Sbjct: 65 QIHDLSVADAGEYSC----MCGQERTSATLTVRALPAR 98
Score = 64.3 bits (157), Expect = 6e-13
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 403 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 462
S +FT+ LK A + ATL+ ++ + W +G E + ++++ + T
Sbjct: 4 GSSGPARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTR 61
Query: 463 GECVLSISEATPQDEAVYSVKASSTETK 490
C L I + + D YS T
Sbjct: 62 --CELQIHDLSVADAGEYSCMCGQERTS 87
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 89.7 bits (223), Expect = 7e-22
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
A F E++ + ++ A+FTCK HP T+TW+K EL A+ + + L
Sbjct: 8 ANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLT 66
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKE 100
I K D YTC G A A L+V +
Sbjct: 67 ISALEKADSDTYTCDI----GQAQSRAQLLVQGRR 97
Score = 75.4 bits (186), Expect = 6e-17
Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 7/96 (7%)
Query: 101 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160
S A FT+ L + E + A P ++ W +G E+ H
Sbjct: 4 GSSGANCFTEELTNLQVEEKGTAVFTCKTE-HPAATVTWRKGLLELRASGKHQPSQE--G 60
Query: 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
L+IS D Y+ G+A+ RA L+
Sbjct: 61 LTLRLTISALEKADSDTYTCDI----GQAQSRAQLL 92
Score = 72.0 bits (177), Expect = 1e-15
Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 18/115 (15%)
Query: 288 GEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTP 347
G + +SG+ T + +++VE TA F T P VTW
Sbjct: 1 GSSGSSGANCFT-----EELTNLQVEEKGTAVFT--------CKTEHPAATVTWRKGLLE 47
Query: 348 MKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKE 402
++ + Q+ +L IS + ++ Y+C G+A + A L V+ +
Sbjct: 48 LRASGKHQPSQE-GLTLRLTISALEKADSDTYTCDI----GQAQSRAQLLVQGRR 97
Score = 71.2 bits (175), Expect = 2e-15
Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 3/88 (3%)
Query: 403 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 462
S A FT+ L + E + A P ++ W +G E+ H
Sbjct: 4 GSSGANCFTEELTNLQVEEKGTAVFTCKTE-HPAATVTWRKGLLELRASGKHQPSQE--G 60
Query: 463 GECVLSISEATPQDEAVYSVKASSTETK 490
L+IS D Y+ +++
Sbjct: 61 LTLRLTISALEKADSDTYTCDIGQAQSR 88
Score = 68.5 bits (168), Expect = 2e-14
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 8/92 (8%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKL 266
A L L V + T + T P V W K E+ + + +L
Sbjct: 7 GANCFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASGKHQPSQEGLTLRL 65
Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
I K + Y + G+A++ + +
Sbjct: 66 TISALEKADSDTYTC----DIGQAQSRAQLLV 93
Score = 27.7 bits (62), Expect = 4.3
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 545 PRFIKTPETAKVMDGQSVLFTAQVG 569
F + +V + + +FT +
Sbjct: 9 NCFTEELTNLQVEEKGTAVFTCKTE 33
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 94.5 bits (234), Expect = 1e-21
Identities = 54/321 (16%), Positives = 100/321 (31%), Gaps = 52/321 (16%)
Query: 5 LAPRFIEKIQPVVSHQEQPALFTCKVEG-HPLP---TMTWQKDGTELHATEHYLITTVES 60
+A + T V G PLP T TW KD +
Sbjct: 1 MAFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPH----------ENN 50
Query: 61 VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ 120
+TL + + T E+ G Y + + + + + ++E+ E + +Q
Sbjct: 51 TATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEE---AELIVNITEPQHFYVSSQ 107
Query: 121 SPATLKATV---TGRPTPSIC-----WYRGKEEILPDNGHTMEFNPTTGECVLSISEATP 172
+ L ATV G+ W +G++ ++I E T
Sbjct: 108 TDVELHATVKFSGGKTPADNYELHYSWSKGED-------------VIDTTQDITIQEFTA 154
Query: 173 QDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLE 232
VY+VK + A+ + AT V+E+ T V + + + +
Sbjct: 155 DKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKT-VALGNEISLNYVVSEDIV 213
Query: 233 AEYTGTPTPEVK--WFKNGK------EIVSKDIETKDNVT-----KLVIKQTTKKTTGKY 279
+ +G P +K W+ + I S+ E + + L + T T K+
Sbjct: 214 GDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKF 273
Query: 280 EIRVVNEAGEARTSGSVTITV 300
+ V +
Sbjct: 274 WCVAKLYQQIEDETVEVAAST 294
Score = 84.9 bits (209), Expect = 2e-18
Identities = 51/319 (15%), Positives = 96/319 (30%), Gaps = 53/319 (16%)
Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTP----SICWYRGKEEILPDNGHTMEFNPTT 160
A + A TL ATV G + W + + +
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTAT-------- 53
Query: 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQA 220
L++++AT ++ Y V +T + + L + + + Q
Sbjct: 54 ----LTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAEL--------IVNITEPQH 101
Query: 221 LLVPKDSTVTLEAE---YTGTPTPEV-----KWFKNGKEIVSKDIETKDNVTKLVIKQTT 272
V + V L A G + W K I D + I++ T
Sbjct: 102 FYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVI--------DTTQDITIQEFT 153
Query: 273 KKTTGKYEIRVVNEAGEARTSGSVTI---TVAEAETVMMDVRVESHPTASFQWFIHSEPV 329
G Y ++V E+ ++ S S I T+ + V+ V S + + + V
Sbjct: 154 ADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIV 213
Query: 330 VV-TGKPTPLVTWS----HDG--TPMKEGKEVTIYQDTDGLC---KLAISEVFPENAGLY 379
+G P + ++ +G +P G EV + + L ++ +
Sbjct: 214 GDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKF 273
Query: 380 SCTAVNPVGEAVAAATLAV 398
C A +A
Sbjct: 274 WCVAKLYQQIEDETVEVAA 292
Score = 77.6 bits (190), Expect = 8e-16
Identities = 49/305 (16%), Positives = 87/305 (28%), Gaps = 58/305 (19%)
Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPE----VKWFKNGKEIVSKDIETKDNVTKL 266
A T+ TL A G W K+ + ++N L
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPH-------ENNTATL 54
Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAE-----TVMMDVRVESHPTASFQ 321
+ T + G Y++ V + + S + EAE T V S
Sbjct: 55 TVADATSENAGSYKVTVQDTDTMT-SVESEVFLMEEAELIVNITEPQHFYVSSQTDVEL- 112
Query: 322 WFIHSEPVVVTGKPTPLV-----TWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENA 376
H+ GK +WS + +++TI E +
Sbjct: 113 ---HATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITI------------QEFTADKN 157
Query: 377 GLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG--- 433
G+Y+ ++ A+A+ + + + ++ + +L V+
Sbjct: 158 GVYTVKVWGESEDSAASASTKIMLATMNVDQD----VVESKTVALGNEISLNYVVSEDIV 213
Query: 434 -------RPTPSICWYRGKEEILP------DNGHTMEFNPTTGECVLSISEATPQDEAVY 480
T WY +E L + G +E T + L AT D A +
Sbjct: 214 GDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKF 273
Query: 481 SVKAS 485
A
Sbjct: 274 WCVAK 278
Score = 56.8 bits (136), Expect = 5e-09
Identities = 35/219 (15%), Positives = 67/219 (30%), Gaps = 38/219 (17%)
Query: 329 VVVTGKPTPL---VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
V +P P TW+ D P + L +++ ENAG Y T +
Sbjct: 25 TVAGDEPLPSNLTYTWTKDDQPH-----------ENNTATLTVADATSENAGSYKVTVQD 73
Query: 386 PVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATV---TGRPTPSIC-- 440
+ + + E+ E + +Q+ L ATV G+
Sbjct: 74 TDTMTSVESEVFLMEE---AELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYEL 130
Query: 441 ---WYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR 497
W +G++ ++I E T VY+VK +
Sbjct: 131 HYSWSKGED-------------VIDTTQDITIQEFTADKNGVYTVKVWGESEDSAASAST 177
Query: 498 SVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPES 536
++L + + + A S+ + ++ +S
Sbjct: 178 KIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDS 216
Score = 40.2 bits (93), Expect = 0.001
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 6/78 (7%)
Query: 494 DGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPET 553
+ N + L ++ T + G ++ + + + + + E I P+
Sbjct: 48 ENNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVF------LMEEAELIVNITEPQH 101
Query: 554 AKVMDGQSVLFTAQVGYS 571
V V A V +S
Sbjct: 102 FYVSSQTDVELHATVKFS 119
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 91.3 bits (226), Expect = 3e-21
Identities = 38/211 (18%), Positives = 60/211 (28%), Gaps = 39/211 (18%)
Query: 14 QPVVSHQEQPALFTCKVEGHPLPT----MTWQKDGTELHATEHYLIT------------- 56
Q + + + A CK P + W ++ + +I
Sbjct: 8 QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPD 67
Query: 57 -----------TVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEA 105
+++ + N DIG Y CK GVA L VL K
Sbjct: 68 LKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK------ 121
Query: 106 PKFTKPLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 164
P T+ E + LK G W + + T+ V
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWL--AEMTSP--V 177
Query: 165 LSISEATPQDEAVYSVKAVNTFGRAECRANL 195
+S+ A+ + YS N G +C L
Sbjct: 178 ISVKNASSEYSGTYSCTVQNRVGSDQCMLRL 208
Score = 80.9 bits (199), Expect = 1e-17
Identities = 29/219 (13%), Positives = 59/219 (26%), Gaps = 39/219 (17%)
Query: 109 TKPLKPVIAEAQSPATLKATVTGRPTP----SICWYRGKEEILPDNGHTMEFN------- 157
T P + + A L T P I W + + + ++
Sbjct: 4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDN 63
Query: 158 ---------------PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATT 202
+G+ ++++ D Y K G A + L
Sbjct: 64 YYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLT------ 117
Query: 203 IDKPRVLEAPTIVRPLQALLVPKDSTVTLE-AEYTGTPTPEVKWFKNGKEIVSKDIETKD 261
VL P+ R + L+ G+ + +W K +
Sbjct: 118 -----VLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAE 172
Query: 262 NVTK-LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
+ + +K + + +G Y V N G + + +
Sbjct: 173 MTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV 211
Score = 78.2 bits (192), Expect = 1e-16
Identities = 36/247 (14%), Positives = 61/247 (24%), Gaps = 52/247 (21%)
Query: 297 TITVAEAETVMMDVRVESHPTASFQWFIH--SEPVVVTGKPTPLVTWSHDGTPMKEGKE- 353
I A+ ET + + P I P ++ +S D +
Sbjct: 9 RIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDL 68
Query: 354 -----VTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAP 408
T G + ++ + + G Y C G A L V K P
Sbjct: 69 KGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK------P 122
Query: 409 KFTKPLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467
T+ E + LK G W + + T+
Sbjct: 123 SGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWL--AEMTSP---- 176
Query: 468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCT 527
V+ + + + G +C +N GS C
Sbjct: 177 -------------------------------VISVKNASSEYSGTYSCTVQNRVGSDQCM 205
Query: 528 ATLSLLP 534
L ++P
Sbjct: 206 LRLDVVP 212
Score = 77.8 bits (191), Expect = 2e-16
Identities = 32/223 (14%), Positives = 57/223 (25%), Gaps = 47/223 (21%)
Query: 213 TIVRPLQALLVPKDSTVTLEAEYTGTPTP----EVKWFKNGKEIVSKDIE---------- 258
+I P Q + K T L ++T +P +++W + + D
Sbjct: 2 SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61
Query: 259 ------------------TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
+ + + + G Y+ +V G A + +TV
Sbjct: 62 DNYYPDLKGRVHFTSNDVKSGDAS-INVTNLQLSDIGTYQCKVKKAPGVA--NKKFLLTV 118
Query: 301 AEA---ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIY 357
+D E + G W
Sbjct: 119 LVKPSGTRCFVDGSEEIGNDFKLKCE------PKEGSLPLQFEWQKLSDSQTMPTPWLAE 172
Query: 358 QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400
+ +++ E +G YSCT N VG L V
Sbjct: 173 MTSPV---ISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212
Score = 68.6 bits (167), Expect = 2e-13
Identities = 18/94 (19%), Positives = 25/94 (26%), Gaps = 3/94 (3%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
P C+ EG WQK +L +
Sbjct: 121 KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSP--VI 178
Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
+ N + E G Y+C N G C L V+
Sbjct: 179 SVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212
Score = 48.5 bits (115), Expect = 1e-06
Identities = 17/159 (10%), Positives = 38/159 (23%), Gaps = 24/159 (15%)
Query: 411 TKPLKPVIAEAQSPATLKATVTGRPTP----SICWYRGKEEILPDNGHTMEFNPTTGECV 466
T P + + A L T P I W + + + ++
Sbjct: 4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSG------ 57
Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC 526
+ + T + + + + ++ + IG C+ + G
Sbjct: 58 ---DKIYDNYYPDLKGRVHFTSNDVKSG--DASINVTNLQLSDIGTYQCKVKKAPGVANK 112
Query: 527 TATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFT 565
L+ V+ P + G
Sbjct: 113 KFLLT---------VLVKPSGTRCFVDGSEEIGNDFKLK 142
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 87.8 bits (218), Expect = 4e-21
Identities = 26/109 (23%), Positives = 38/109 (34%), Gaps = 10/109 (9%)
Query: 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVE-SV 61
+ IE ++ V + A F C++ + W D T LHA E I
Sbjct: 10 QGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGY 69
Query: 62 STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTK 110
L + +D G +A G SA L V EK F++
Sbjct: 70 HVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKP-----SVFSR 109
Score = 82.1 bits (203), Expect = 5e-19
Identities = 19/119 (15%), Positives = 44/119 (36%), Gaps = 11/119 (9%)
Query: 88 ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEIL 147
+ ++ +V + + L+ V + S AT + ++ + W+ K +
Sbjct: 1 GSSGSSGLVQGR-----RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLH 55
Query: 148 PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANL-VLRKATTIDK 205
+ + ++ P G VL++ + +D +A G A L V K + +
Sbjct: 56 ANELNEIDAQP-GGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSR 109
Score = 75.5 bits (186), Expect = 8e-17
Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 18/125 (14%)
Query: 290 ARTSGSVTITVAEAE--TVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTP 347
+ S + + DV V+ +A+F+ ++ V W D TP
Sbjct: 1 GSSGSSGLVQGRRVHIIEDLEDVDVQEGSSATFR-------CRISPANYEPVHWFLDKTP 53
Query: 348 MKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEA 407
+ + I G L + ++ +++G A G+ A+A L V EK
Sbjct: 54 LHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKP----- 104
Query: 408 PKFTK 412
F++
Sbjct: 105 SVFSR 109
Score = 73.6 bits (181), Expect = 4e-16
Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 6/101 (5%)
Query: 390 AVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEIL 449
+ ++ V+ + + L+ V + S AT + ++ + W+ K +
Sbjct: 1 GSSGSSGLVQGR-----RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLH 55
Query: 450 PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK 490
+ + ++ P G VL++ + +D +A
Sbjct: 56 ANELNEIDAQP-GGYHVLTLRQLALKDSGTIYFEAGDQRAS 95
Score = 72.8 bits (179), Expect = 8e-16
Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 8/99 (8%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDN-VTK 265
I+ L+ + V + S+ T + V WF + + + + I+ +
Sbjct: 12 RRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHV 71
Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAE 304
L ++Q K +G EAG+ R S ++ +T +
Sbjct: 72 LTLRQLALKDSGTIYF----EAGDQRASAALRVTEKPSV 106
Score = 28.5 bits (64), Expect = 2.1
Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 8/44 (18%)
Query: 525 TCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
+ ++ + I+ E V +G S F ++
Sbjct: 2 SSGSSGLVQGRR--------VHIIEDLEDVDVQEGSSATFRCRI 37
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 86.6 bits (215), Expect = 7e-21
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 5/92 (5%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
+ + V + A F ++ P W+ G L A+ I L +
Sbjct: 6 IEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILIL 64
Query: 67 INPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
N G + +A N +ANL V E
Sbjct: 65 HNCQLGMTGEVSFQAAN----TKSAANLKVKE 92
Score = 64.2 bits (157), Expect = 4e-13
Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 7/91 (7%)
Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 165
+ KPL V A + ++ P W + + + + +L
Sbjct: 6 IEVEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKK--HIL 62
Query: 166 SISEATPQDEAVYSVKAVNTFGRAECRANLV 196
+ S +A + ANL
Sbjct: 63 ILHNCQLGMTGEVSFQA----ANTKSAANLK 89
Score = 64.2 bits (157), Expect = 4e-13
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 4/83 (4%)
Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVI 268
+ +PL + V T E E + P +W G+ + + I L++
Sbjct: 6 IEVEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKKHILIL 64
Query: 269 KQTTKKTTGKYEIRVVNEAGEAR 291
TG+ + N A
Sbjct: 65 HNCQLGMTGEVSFQAANTKSAAN 87
Score = 64.2 bits (157), Expect = 5e-13
Identities = 18/103 (17%), Positives = 29/103 (28%), Gaps = 25/103 (24%)
Query: 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIY 357
+ V ET ++ + +P W G P+ + I
Sbjct: 15 VEVFVGETAHFEIEL--------------------SEPDVHGQWKLKGQPLAASPDCEII 54
Query: 358 QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400
+D L + G S A +AA L V+E
Sbjct: 55 ED-GKKHILILHNCQLGMTGEVSFQA----ANTKSAANLKVKE 92
Score = 62.3 bits (152), Expect = 2e-12
Identities = 11/83 (13%), Positives = 26/83 (31%), Gaps = 3/83 (3%)
Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467
+ KPL V A + ++ P W + + + + +L
Sbjct: 6 IEVEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKK--HIL 62
Query: 468 SISEATPQDEAVYSVKASSTETK 490
+ S +A++T++
Sbjct: 63 ILHNCQLGMTGEVSFQAANTKSA 85
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 87.1 bits (216), Expect = 8e-21
Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 4/97 (4%)
Query: 6 APRFI---EKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
P+ Q + + +G P P + W K G L T + T + +
Sbjct: 21 PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPL-DTSRVHVRTSDFDT 79
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
+ + D G Y T + + V+EK
Sbjct: 80 VFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEK 116
Score = 83.6 bits (207), Expect = 1e-19
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
Query: 208 VLEAPTIVRPL---QALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD--IETKDN 262
+ E P I P Q + + L + G P P+V W K G + + + T D
Sbjct: 18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDF 77
Query: 263 VTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
T ++Q + +G+YE+ V E + + ++ I V E
Sbjct: 78 DTVFFVRQAARSDSGEYELSVQIENMKD--TATIRIRVVE 115
Score = 71.3 bits (175), Expect = 3e-15
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 328 PVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPV 387
V GKP P V W+ G P+ + V + + +D + + ++G Y +
Sbjct: 45 VVPFQGKPRPQVVWTKGGAPL-DTSRVHV-RTSDFDTVFFVRQAARSDSGEYELSVQIEN 102
Query: 388 GEAVAAATLAVEEK 401
+ A + V EK
Sbjct: 103 MKDTATIRIRVVEK 116
Score = 70.9 bits (174), Expect = 4e-15
Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 14/125 (11%)
Query: 85 GGVATCSANLIVLEKEESGEAPKFTKPLK---PVIAEAQSPATLKATVTGRPTPSICWYR 141
G T + + + E E PK P I + L G+P P + W +
Sbjct: 4 GSSGTLAQPVTIREIAE---PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK 60
Query: 142 GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKAT 201
G + + + + V + +A D Y + + +
Sbjct: 61 GGAPLDTSR---VHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRI-----R 112
Query: 202 TIDKP 206
++K
Sbjct: 113 VVEKA 117
Score = 61.6 bits (150), Expect = 8e-12
Identities = 20/152 (13%), Positives = 36/152 (23%), Gaps = 44/152 (28%)
Query: 383 AVNPVGEAVAAATLAVEEKEESGEAPKFTKPLK---PVIAEAQSPATLKATVTGRPTPSI 439
+ G T+ E E PK P I + L G+P P +
Sbjct: 2 SSGSSGTLAQPVTI-----REIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQV 56
Query: 440 CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSV 499
W +G + ++ + T +V
Sbjct: 57 VWTKGGAPL------------------------------------DTSRVHVRTSDFDTV 80
Query: 500 LLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
+ + R G+ + T T +
Sbjct: 81 FFVRQAARSDSGEYELSVQIENMKDTATIRIR 112
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 85.5 bits (212), Expect = 2e-20
Identities = 22/99 (22%), Positives = 32/99 (32%), Gaps = 6/99 (6%)
Query: 6 APRFIEKIQPVVSHQE-QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
F + + P + F ++ P + W K+G E+ + Y+ L
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRIL 65
Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESG 103
I N D Y A G CS L V SG
Sbjct: 66 FINNCQMTDDSEYYVTA----GDEKCSTELFVRSGPSSG 100
Score = 67.0 bits (164), Expect = 5e-14
Identities = 24/96 (25%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 210 EAPTIVRPLQ-ALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTK 265
+ L A V K V E P EVKW+KNG+EI E K
Sbjct: 6 SGAAFAKILDPAYQVDKGGRVRFVVE-LADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRI 64
Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA 301
L I +Y + AG+ + S + +
Sbjct: 65 LFINNCQMTDDSEYYV----TAGDEKCSTELFVRSG 96
Score = 64.7 bits (158), Expect = 4e-13
Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 5/76 (6%)
Query: 330 VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
V P V W +G ++ + L I+ + Y TA G+
Sbjct: 30 VELADPKLEVKWYKNGQEIRPSTKYIFEHK-GCQRILFINNCQMTDDSEYYVTA----GD 84
Query: 390 AVAAATLAVEEKEESG 405
+ L V SG
Sbjct: 85 EKCSTELFVRSGPSSG 100
Score = 62.0 bits (151), Expect = 3e-12
Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 8/101 (7%)
Query: 101 ESGEAPKFTKPLKP-VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 159
F K L P + + P + WY+ +EI P + E
Sbjct: 3 SGSSGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGC 61
Query: 160 TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKA 200
+L I+ D++ Y V A G +C L +R
Sbjct: 62 Q--RILFINNCQMTDDSEYYVTA----GDEKCSTELFVRSG 96
Score = 58.2 bits (141), Expect = 7e-11
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 4/89 (4%)
Query: 403 ESGEAPKFTKPLKP-VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 461
F K L P + + P + WY+ +EI P + E
Sbjct: 3 SGSSGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGC 61
Query: 462 TGECVLSISEATPQDEAVYSVKASSTETK 490
+L I+ D++ Y V A +
Sbjct: 62 Q--RILFINNCQMTDDSEYYVTAGDEKCS 88
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 85.0 bits (211), Expect = 2e-20
Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
I+ ++ + C++ P + W KD + ++ Y + +++ L I
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67
Query: 67 INPTKEDIGVYTCKATNIGGVATCSANLIVLEKEE 101
+ +D G YTC+ + +A+L V EK
Sbjct: 68 RGASLKDAGEYTCEVEA----SKSTASLHVEEKAS 98
Score = 70.8 bits (174), Expect = 3e-15
Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 3/92 (3%)
Query: 99 KEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP 158
S KPL+ L+ ++ TP + W + ++ I + +
Sbjct: 2 SSGSSGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEG 60
Query: 159 TTGECVLSISEATPQDEAVYSVKAVNTFGRAE 190
+L I A+ +D Y+ + + A
Sbjct: 61 --TMAMLVIRGASLKDAGEYTCEVEASKSTAS 90
Score = 69.3 bits (170), Expect = 1e-14
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVI 268
I++PL+ V V L E + TP V W K+ K I + + + LVI
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67
Query: 269 KQTTKKTTGKYEIRVVNEAGEAR 291
+ + K G+Y V A
Sbjct: 68 RGASLKDAGEYTCEVEASKSTAS 90
Score = 68.1 bits (167), Expect = 2e-14
Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 401 KEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP 460
S KPL+ L+ ++ TP + W + ++ I + +
Sbjct: 2 SSGSSGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEG 60
Query: 461 TTGECVLSISEATPQDEAVYSVKASSTETK 490
+L I A+ +D Y+ + ++++
Sbjct: 61 --TMAMLVIRGASLKDAGEYTCEVEASKST 88
Score = 67.7 bits (166), Expect = 4e-14
Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 18/116 (15%)
Query: 288 GEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTP 347
G + +SG I + D V + ++ TP V W D
Sbjct: 1 GSSGSSGPAAII-----KPLEDQWVAPGEDVELR-------CELSRAGTP-VHWLKDRKA 47
Query: 348 MKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEE 403
+++ ++ + + + L I ++AG Y+C A+L VEEK
Sbjct: 48 IRKSQKYDVVCE-GTMAMLVIRGASLKDAGEYTCEVEASKST----ASLHVEEKAS 98
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 83.6 bits (207), Expect = 9e-20
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Query: 2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESV 61
+V+ + + V + A +C+V +TW KDG +L ++ + V
Sbjct: 7 GKVVFAKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCT 65
Query: 62 STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
L + + + G Y+C+A S L V +
Sbjct: 66 RRLVVQQAGQAEAGEYSCEAGG----QQLSFRLQVAGQ 99
Score = 72.4 bits (178), Expect = 8e-16
Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 15/114 (13%)
Query: 288 GEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTP 347
G + +SG V A+ + +V+ E+ +A+ + VTW DG
Sbjct: 1 GSSGSSGKVV--FAKEQPAHREVQAEAGASATLS--------CEVAQAQTEVTWYKDGKK 50
Query: 348 MKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEK 401
+ +V + +L + + AG YSC A G + L V +
Sbjct: 51 LSSSSKVRVEAV-GCTRRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQVAGQ 99
Score = 61.3 bits (149), Expect = 6e-12
Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 16/111 (14%)
Query: 86 GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEE 145
G + S ++ K + V AEA + ATL V + WY+ ++
Sbjct: 1 GSSGSSGKVVF---------AKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKK 50
Query: 146 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
+ + +E T L + +A + YS +A G + L
Sbjct: 51 LSSSSKVRVEAVGCT--RRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQ 95
Score = 60.1 bits (146), Expect = 2e-11
Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 12/103 (11%)
Query: 388 GEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEE 447
G + ++ + K + V AEA + ATL V + WY+ ++
Sbjct: 1 GSSGSSGKVVF---------AKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKK 50
Query: 448 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK 490
+ + +E T L + +A + YS +A +
Sbjct: 51 LSSSSKVRVEAVGCT--RRLVVQQAGQAEAGEYSCEAGGQQLS 91
Score = 59.0 bits (143), Expect = 3e-11
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 200 ATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD--- 256
+ + K + R +Q ++ TL E EV W+K+GK++ S
Sbjct: 3 SGSSGKVVFAKEQPAHREVQ---AEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVR 58
Query: 257 IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
+E +LV++Q + G+Y EAG + S + +
Sbjct: 59 VEAVGCTRRLVVQQAGQAEAGEYSC----EAGGQQLSFRLQVA 97
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 83.2 bits (206), Expect = 1e-19
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 4/98 (4%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
+ + + + + C++ + W K+G + ++ + + L
Sbjct: 7 GLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIHKLV 64
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESG 103
I N ED G Y T A + V+ SG
Sbjct: 65 IANALTEDEGDYVFAPDA--YNVTLPAKVHVISGPSSG 100
Score = 70.8 bits (174), Expect = 3e-15
Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 7/94 (7%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKL 266
I+ PL V + L+ E + KW KNG + D + K + KL
Sbjct: 6 SGLKILTPLTDQTVNLGKEICLKCEISENIP--GKWTKNGLPVQESDRLKVVQKGRIHKL 63
Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
VI + G Y +A V +
Sbjct: 64 VIANALTEDEGDY--VFAPDAYNVTLPAKVHVIS 95
Score = 63.5 bits (155), Expect = 9e-13
Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 12/99 (12%)
Query: 307 MMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKL 366
+ D V + ++ W+ +G P++E + + Q + KL
Sbjct: 14 LTDQTVNLGKEICLK-------CEISENIP--GKWTKNGLPVQESDRLKVVQK-GRIHKL 63
Query: 367 AISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESG 405
I+ E+ G Y A + V SG
Sbjct: 64 VIANALTEDEGDYVF--APDAYNVTLPAKVHVISGPSSG 100
Score = 63.1 bits (154), Expect = 1e-12
Identities = 15/95 (15%), Positives = 25/95 (26%), Gaps = 7/95 (7%)
Query: 102 SGEAP-KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160
SG + K PL LK ++ W + + + +
Sbjct: 3 SGSSGLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQK--G 58
Query: 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANL 195
L I+ A +DE Y A +
Sbjct: 59 RIHKLVIANALTEDEGDYVF--APDAYNVTLPAKV 91
Score = 58.5 bits (142), Expect = 5e-11
Identities = 14/88 (15%), Positives = 24/88 (27%), Gaps = 5/88 (5%)
Query: 404 SGEAP-KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 462
SG + K PL LK ++ W + + + +
Sbjct: 3 SGSSGLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQK--G 58
Query: 463 GECVLSISEATPQDEAVYSVKASSTETK 490
L I+ A +DE Y +
Sbjct: 59 RIHKLVIANALTEDEGDYVFAPDAYNVT 86
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 82.8 bits (205), Expect = 1e-19
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
F +K + V PA+F + E + WQ+ G+++ A+ Y + T + TL +
Sbjct: 9 SAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHTLTV 67
Query: 67 INPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
D G Y A G + +L V+E
Sbjct: 68 REVGPADQGSYAVIA----GSSKVKFDLKVIE 95
Score = 63.1 bits (154), Expect = 1e-12
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 165
F+K + V A SPA +A + W RG +I N + + T L
Sbjct: 9 SAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTR--HTL 65
Query: 166 SISEATPQDEAVYSVKAVNTFGRAECRANLV 196
++ E P D+ Y+V A G ++ + +L
Sbjct: 66 TVREVGPADQGSYAVIA----GSSKVKFDLK 92
Score = 62.4 bits (152), Expect = 2e-12
Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 205 KPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKD 261
+P + +++ V S EAE +V+W + G +I + + + T+
Sbjct: 2 EPGKKPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEG 60
Query: 262 NVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
L +++ G Y + AG ++ + +
Sbjct: 61 TRHTLTVREVGPADQGSYAV----IAGSSKVKFDLKVI 94
Score = 62.0 bits (151), Expect = 3e-12
Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 13/94 (13%)
Query: 307 MMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKL 366
V V + A F+ T + V W G+ + + + + L
Sbjct: 15 PRSVEVAAGSPAVFE--------AETERAGVKVRWQRGGSDISASNKYGLATE-GTRHTL 65
Query: 367 AISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400
+ EV P + G Y+ A G + L V E
Sbjct: 66 TVREVGPADQGSYAVIA----GSSKVKFDLKVIE 95
Score = 60.0 bits (146), Expect = 1e-11
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467
F+K + V A SPA +A + W RG +I N + + T L
Sbjct: 9 SAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTR--HTL 65
Query: 468 SISEATPQDEAVYSVKASSTETK 490
++ E P D+ Y+V A S++ K
Sbjct: 66 TVREVGPADQGSYAVIAGSSKVK 88
Score = 27.3 bits (61), Expect = 5.1
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 545 PRFIKTPETAKVMDGQSVLFTAQV 568
F K P + +V G +F A+
Sbjct: 9 SAFSKKPRSVEVAAGSPAVFEAET 32
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 83.1 bits (206), Expect = 1e-19
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 5/96 (5%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
RF E ++ + + A C + P W L + Y + ++ L
Sbjct: 8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAPV-KWCYGNNVLRPGDKYSLRQEGAMLELV 66
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEE 101
+ N +D G Y+C G T SA L V
Sbjct: 67 VRNLRPQDSGRYSCSF----GDQTTSATLTVTALPS 98
Score = 73.1 bits (180), Expect = 5e-16
Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 7/97 (7%)
Query: 100 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 159
S +F + LK + ATL+ ++ P + W G + P + +++
Sbjct: 3 SGSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQE-- 59
Query: 160 TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
L + PQD YS G A L
Sbjct: 60 GAMLELVVRNLRPQDSGRYSCSF----GDQTTSATLT 92
Score = 69.3 bits (170), Expect = 1e-14
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 3/89 (3%)
Query: 402 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 461
S +F + LK + ATL+ ++ P + W G + P + +++
Sbjct: 3 SGSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQE-- 59
Query: 462 TGECVLSISEATPQDEAVYSVKASSTETK 490
L + PQD YS T
Sbjct: 60 GAMLELVVRNLRPQDSGRYSCSFGDQTTS 88
Score = 68.5 bits (168), Expect = 2e-14
Identities = 20/97 (20%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 307 MMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKL 366
+ D+ V A+ + V++ P V W + ++ G + ++ Q+ + +L
Sbjct: 15 LKDLEVLEGGAATLR-------CVLSSVAAP-VKWCYGNNVLRPGDKYSLRQE-GAMLEL 65
Query: 367 AISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEE 403
+ + P+++G YSC+ G+ +ATL V
Sbjct: 66 VVRNLRPQDSGRYSCSF----GDQTTSATLTVTALPS 98
Score = 66.6 bits (163), Expect = 8e-14
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLV 267
L+ L V + TL + P VKW + D + + + +LV
Sbjct: 8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELV 66
Query: 268 IKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAE 304
++ + +G+Y G+ TS ++T+T +
Sbjct: 67 VRNLRPQDSGRYSC----SFGDQTTSATLTVTALPSG 99
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 83.8 bits (207), Expect = 2e-19
Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 10/107 (9%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESV----- 61
P ++ V H V+G P P++ W +G+ L+ T +E
Sbjct: 4 PASVQLHTAVEMHHW---CIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60
Query: 62 --STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAP 106
L + PT + G YT A N G A+ S ++
Sbjct: 61 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPE 107
Score = 65.3 bits (159), Expect = 4e-13
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 6/90 (6%)
Query: 325 HSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGL------CKLAISEVFPENAGL 378
P V G+P P + W +G+ + E + L +++ N G
Sbjct: 18 WCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGN 77
Query: 379 YSCTAVNPVGEAVAAATLAVEEKEESGEAP 408
Y+ A NP G+A A+ A +
Sbjct: 78 YTLLAANPFGQASASIMAAFMDNPFEFNPE 107
Score = 63.0 bits (153), Expect = 3e-12
Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 8/107 (7%)
Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEF-----NPTT 160
P + V + +V G+P PS+ W + + EF N T
Sbjct: 4 PASVQLHTAV---EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60
Query: 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPR 207
L +++ T + Y++ A N FG+A P
Sbjct: 61 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPE 107
Score = 57.3 bits (138), Expect = 3e-10
Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 13/118 (11%)
Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD------IETKDNVTK 265
P V+ A+ + + G P P ++W NG + +E N T
Sbjct: 4 PASVQLHTAV---EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60
Query: 266 ----LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTAS 319
L + Q T G Y + N G+A S E D +++ T+
Sbjct: 61 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTSG 118
Score = 53.4 bits (128), Expect = 7e-09
Identities = 19/131 (14%), Positives = 34/131 (25%), Gaps = 41/131 (31%)
Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEF-----NPTT 462
P + V + +V G+P PS+ W + + EF N T
Sbjct: 4 PASVQLHTAV---EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60
Query: 463 GECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAG 522
L +++ T + Y T A N G
Sbjct: 61 RHGCLRLNQPTHVNNGNY---------------------------------TLLAANPFG 87
Query: 523 SVTCTATLSLL 533
+ + + +
Sbjct: 88 QASASIMAAFM 98
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 82.0 bits (203), Expect = 3e-19
Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 10/106 (9%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
++ I + + A+F C+V T W K+G E+ ++ I+ V L
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLV 66
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKP 111
I + ED G YT + SA L LE K + P
Sbjct: 67 IDDVRPEDEGDYTFVPDG--YALSLSAKLNFLE-------IKVSGP 103
Score = 67.4 bits (165), Expect = 5e-14
Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 23/126 (18%)
Query: 288 GEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTP 347
G + +SG + + + D+ V++ A F+ V+ W +G
Sbjct: 1 GSSGSSGQLEVL-----QDIADLTVKAAEQAVFK-------CEVSD-EKVTGKWYKNGVE 47
Query: 348 MKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEA 407
++ K +TI KL I +V PE+ G Y+ +A L E
Sbjct: 48 VRPSKRITISHV-GRFHKLVIDDVRPEDEGDYTFVPDGYALS--LSAKLNFLE------- 97
Query: 408 PKFTKP 413
K + P
Sbjct: 98 IKVSGP 103
Score = 65.9 bits (161), Expect = 1e-13
Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 3/101 (2%)
Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
S + + + + +A A K V+ + WY+ E+ P T+
Sbjct: 5 SSGQLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHV--GR 61
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATT 202
L I + P+DE Y+ + N + K +
Sbjct: 62 FHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKVSG 102
Score = 65.5 bits (160), Expect = 2e-13
Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 8/99 (8%)
Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLV 267
+++ + L V + E + KW+KNG E+ I KLV
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVGRFHKLV 66
Query: 268 IKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV 306
I + G Y A S + E +
Sbjct: 67 IDDVRPEDEGDYTFVPDGYALSL----SAKLNFLEIKVS 101
Score = 60.9 bits (148), Expect = 9e-12
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 3/86 (3%)
Query: 404 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
S + + + + +A A K V+ + WY+ E+ P T+
Sbjct: 5 SSGQLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHV--GR 61
Query: 464 ECVLSISEATPQDEAVYSVKASSTET 489
L I + P+DE Y+
Sbjct: 62 FHKLVIDDVRPEDEGDYTFVPDGYAL 87
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 82.4 bits (203), Expect = 3e-19
Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 12/108 (11%)
Query: 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPL---PTMTWQKD---------GTELHAT 50
+ F+ + Q F+ +V G L P + W K G L
Sbjct: 1 DDPIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLH 60
Query: 51 EHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
+ Y + + L I + G Y C+ + + NL V E
Sbjct: 61 DSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108
Score = 60.4 bits (146), Expect = 1e-11
Identities = 17/101 (16%), Positives = 26/101 (25%), Gaps = 10/101 (9%)
Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRP---TPSICWYRGKEEILPDN-------GHTM 154
F + T A V G P + W++GK L +
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 155 EFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANL 195
+ L I++A P Y + NL
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNL 104
Score = 55.8 bits (134), Expect = 6e-10
Identities = 24/107 (22%), Positives = 33/107 (30%), Gaps = 17/107 (15%)
Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTP---TPEVKWFKNGKEIV------------SK 255
V Q V ++T A G P VKWFK + S
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 256 DIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
D +K + +L I TG Y V + + +TV E
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFD--CSNFNLTVHE 108
Score = 54.6 bits (131), Expect = 1e-09
Identities = 19/111 (17%), Positives = 30/111 (27%), Gaps = 24/111 (21%)
Query: 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGT---PMKEGKEV 354
V ++ RV P+V W K G+ +
Sbjct: 14 GEVTVGGSITFSARVAGASLL----------------KPPVVKWFKGKWVDLSSKVGQHL 57
Query: 355 TIYQDTD-----GLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400
++ D L +L I++ P G Y C + L V E
Sbjct: 58 QLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108
Score = 51.5 bits (123), Expect = 2e-08
Identities = 17/134 (12%), Positives = 25/134 (18%), Gaps = 43/134 (32%)
Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRP---TPSICWYRGKEEILPDN-------GHTM 456
F + T A V G P + W++GK L +
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 457 EFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCR 516
+ L I++A P Y C
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSY---------------------------------RCE 90
Query: 517 AENVAGSVTCTATL 530
L
Sbjct: 91 VSTKDKFDCSNFNL 104
Score = 30.7 bits (69), Expect = 0.35
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 544 SPRFIKTPETAKVMDGQSVLFTAQVGYSERLEIPLI 579
F+ P+ +V G S+ F+A+V + L+ P++
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVV 39
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 85.6 bits (212), Expect = 3e-19
Identities = 37/239 (15%), Positives = 66/239 (27%), Gaps = 45/239 (18%)
Query: 75 GVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT 134
Y ++ + + APK P V + + V P+
Sbjct: 1 ATYAAASSALVP------------RGSHMYAPKLQGP-VAVYTWEGNQVNITCEVFAYPS 47
Query: 135 PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRAN 194
+I W+R + + N ++ T L ++ + D Y+ AVN G+
Sbjct: 48 ATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFI 107
Query: 195 LVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEA-EYTGT-----------PTPE 242
L + P+ Q + V + E TG E
Sbjct: 108 L-----------VQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGE 156
Query: 243 VKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRV--VNEAGEARTSGSVTIT 299
W + +E + L K Y +R+ +N G S +
Sbjct: 157 EVWHSKWYDAKEASMEGIVTIVGL-------KPETTYAVRLAALNGKGLGEISAASEFK 208
Score = 82.6 bits (204), Expect = 3e-18
Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 2/108 (1%)
Query: 2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE--HYLITTVE 59
+ ++ V + + TC+V +P T++W +DG L ++ + I
Sbjct: 14 GSHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTP 73
Query: 60 SVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPK 107
S S LE+ ++ D G Y C A N G + L+ + S +
Sbjct: 74 SASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQ 121
Score = 67.9 bits (166), Expect = 3e-13
Identities = 23/155 (14%), Positives = 41/155 (26%), Gaps = 46/155 (29%)
Query: 377 GLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT 436
Y+ + V + APK P V + + V P+
Sbjct: 1 ATYAAASSALVP------------RGSHMYAPKLQGP-VAVYTWEGNQVNITCEVFAYPS 47
Query: 437 PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGN 496
+I W+R + + N + KI +
Sbjct: 48 ATISWFRDGQLLPSSNYSNI---------------------------------KIYNTPS 74
Query: 497 RSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
S L ++ + + G+ C A N G + L
Sbjct: 75 ASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILV 109
Score = 65.6 bits (160), Expect = 3e-12
Identities = 21/127 (16%), Positives = 38/127 (29%), Gaps = 8/127 (6%)
Query: 284 VNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSH 343
A + + A + V + V P+ ++W
Sbjct: 2 TYAAASSALVPRGSHMYAPKLQGPVAVYTWEGNQVNI-------TCEVFAYPSATISWFR 54
Query: 344 DGTPMKEGKEVTIY-QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKE 402
DG + I +T L ++ + G Y+CTAVN +G+ L +
Sbjct: 55 DGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTP 114
Query: 403 ESGEAPK 409
S +
Sbjct: 115 SSPSIDQ 121
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 84.3 bits (208), Expect = 4e-19
Identities = 27/185 (14%), Positives = 45/185 (24%), Gaps = 24/185 (12%)
Query: 22 QPALFTCKVEGHPLPTM--TWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTC 79
L TC + W K G L E + + G Y+C
Sbjct: 14 SKILLTCSLNDSATEVTGHRWLKGGVVLKEDA-------LPGQKTEFKVDSDDQWGEYSC 66
Query: 80 KATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP-TPSIC 138
+AN+ + P+ A L P
Sbjct: 67 VFLPE---PMGTANIQLHGP------PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWA 117
Query: 139 WYRGKEEILPDNGHT----MEFNPTTGECVLSISEATPQ-DEAVYSVKAVNTFGRAECRA 193
WY+ + + + + G L I + D Y ++ G +
Sbjct: 118 WYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAII 177
Query: 194 NLVLR 198
L +R
Sbjct: 178 TLRVR 182
Score = 74.3 bits (182), Expect = 1e-15
Identities = 33/194 (17%), Positives = 50/194 (25%), Gaps = 40/194 (20%)
Query: 223 VPKDSTVTLEAEYTGTPTPEV--KWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYE 280
S + L + T +W K G + E K K + G+Y
Sbjct: 10 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVL----KEDALPGQKTEFKVDSDDQWGEYS 65
Query: 281 IRVVNEAGEART----------SGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVV 330
+ E + + + E ET M+ + ES P
Sbjct: 66 CVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVP-------------- 111
Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVT-----IYQDTDGLCKLAISEVFPEN-AGLYSCTAV 384
P W + + G +L I + E G Y C
Sbjct: 112 ----PVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGT 167
Query: 385 NPVGEAVAAATLAV 398
+ G A TL V
Sbjct: 168 SSKGSDQAIITLRV 181
Score = 72.8 bits (178), Expect = 5e-15
Identities = 29/205 (14%), Positives = 47/205 (22%), Gaps = 50/205 (24%)
Query: 330 VVTGKPTPLV--TWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPV 387
+ T + W G +KE K + G YSC +
Sbjct: 21 SLNDSATEVTGHRWLKGGVVLKEDALPG--------QKTEFKVDSDDQWGEYSCVFLP-- 70
Query: 388 GEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP-TPSICWYRGKE 446
E + A + + P+ A L P WY+ +
Sbjct: 71 -EPMGTANIQLHGP------PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITD 123
Query: 447 EILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKIT 506
+ S + + + RS L I +
Sbjct: 124 SEDKALMNG-----------------------------SESRFFVSSSQGRSELHIENLN 154
Query: 507 RDQ-IGDVTCRAENVAGSVTCTATL 530
+ G C + GS TL
Sbjct: 155 MEADPGQYRCNGTSSKGSDQAIITL 179
Score = 65.8 bits (160), Expect = 1e-12
Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 8/98 (8%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTM-TWQKDGTELH------ATEHYLITTVE 59
PR ++ + A+ CK E P T W K + + +++ +
Sbjct: 84 PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 143
Query: 60 SVSTLEIINPT-KEDIGVYTCKATNIGGVATCSANLIV 96
S L I N + D G Y C T+ G L V
Sbjct: 144 GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
Score = 65.8 bits (160), Expect = 1e-12
Identities = 21/203 (10%), Positives = 52/203 (25%), Gaps = 36/203 (17%)
Query: 109 TKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLS 166
+ + + S L ++ T W +G + D
Sbjct: 2 AGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG---------QKTE 52
Query: 167 ISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKD 226
+ YS + AN+ ++ P + + + +
Sbjct: 53 FKVDSDDQWGEYSCVFLP---EPMGTANI-----------QLHGPPRVKAVKSSEHINEG 98
Query: 227 STVTLEAEYTGTP-TPEVKWFKNGKEIVSKD---------IETKDNVTKLVIKQTTKKT- 275
T L + P + W+K + + ++L I+ +
Sbjct: 99 ETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEAD 158
Query: 276 TGKYEIRVVNEAGEARTSGSVTI 298
G+Y + G + ++ +
Sbjct: 159 PGQYRCNGTSSKGSDQAIITLRV 181
Score = 41.2 bits (96), Expect = 2e-04
Identities = 15/157 (9%), Positives = 33/157 (21%), Gaps = 56/157 (35%)
Query: 411 TKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLS 468
+ + + S L ++ T W +G + D
Sbjct: 2 AGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG------------- 48
Query: 469 ISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTA 528
+ DQ G+ +C TA
Sbjct: 49 -----------------------------QKTEFKVDSDDQWGEYSCVFLP---EPMGTA 76
Query: 529 TLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFT 565
+ + PR + + +G++ +
Sbjct: 77 NIQ---------LHGPPRVKAVKSSEHINEGETAMLV 104
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 81.3 bits (201), Expect = 6e-19
Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 5/94 (5%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
++++ + + + F C + W G + ++ + T L
Sbjct: 9 VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILV 68
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
+ D G T A+LIV E+
Sbjct: 69 VREAAPSDAGEVVFSVRG----LTSKASLIVRER 98
Score = 68.6 bits (168), Expect = 2e-14
Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 16/114 (14%)
Query: 288 GEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTP 347
G + +SG V IT + + V + SF E V+ + W+ G
Sbjct: 1 GSSGSSGHVGIT-----KRLKTMEVLEGESCSF------ECVLSHESASDPAMWTVGGKT 49
Query: 348 MKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEK 401
+ + L + E P +AG + + A+L V E+
Sbjct: 50 VGSSSRFQATRQ-GRKYILVVREAAPSDAGEVVFSV----RGLTSKASLIVRER 98
Score = 67.0 bits (164), Expect = 6e-14
Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 7/96 (7%)
Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTT 160
S TK LK + + + ++ + W G + + +
Sbjct: 5 SSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQ--G 62
Query: 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
+ +L + EA P D +A+L+
Sbjct: 63 RKYILVVREAAPSDAGEVVFSV----RGLTSKASLI 94
Score = 64.7 bits (158), Expect = 4e-13
Identities = 13/88 (14%), Positives = 26/88 (29%), Gaps = 3/88 (3%)
Query: 404 SGEAPKFTKPLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTT 462
S TK LK + + + ++ + W G + + +
Sbjct: 5 SSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQ--G 62
Query: 463 GECVLSISEATPQDEAVYSVKASSTETK 490
+ +L + EA P D +K
Sbjct: 63 RKYILVVREAAPSDAGEVVFSVRGLTSK 90
Score = 63.9 bits (156), Expect = 7e-13
Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 212 PTIVRPLQALLVPKDSTVTLEAEYT-GTPTPEVKWFKNGKEIVSKD---IETKDNVTKLV 267
I + L+ + V + + + E + + + W GK + S + LV
Sbjct: 9 VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILV 68
Query: 268 IKQTTKKTTGKYEIRVVNEAGEAR 291
+++ G+ V +A
Sbjct: 69 VREAAPSDAGEVVFSVRGLTSKAS 92
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 81.6 bits (201), Expect = 8e-19
Identities = 27/109 (24%), Positives = 38/109 (34%), Gaps = 12/109 (11%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPL---PTMTWQKD---------GTELHATEHY 53
FIEK Q + F KV+ L PT+ W K G L E +
Sbjct: 7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF 66
Query: 54 LITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEES 102
+ ++II G Y C+ T +CS +L V E +
Sbjct: 67 ERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGT 115
Score = 66.6 bits (162), Expect = 2e-13
Identities = 19/122 (15%), Positives = 37/122 (30%), Gaps = 11/122 (9%)
Query: 101 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP---TPSICWYRGKE-EILPDNGHTMEF 156
F + + + T A V P+I W++GK ++ G ++
Sbjct: 3 SGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQL 62
Query: 157 NPT------TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLE 210
T + I +A Y + C +L + ++T P +
Sbjct: 63 KETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT-PNIDS 121
Query: 211 AP 212
P
Sbjct: 122 GP 123
Score = 60.4 bits (146), Expect = 2e-11
Identities = 19/153 (12%), Positives = 37/153 (24%), Gaps = 43/153 (28%)
Query: 403 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP---TPSICWYRGKE-EILPDNGHTMEF 458
F + + + T A V P+I W++GK ++ G ++
Sbjct: 3 SGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQL 62
Query: 459 NPT------TGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGD 512
T + I +A Y
Sbjct: 63 KETFERHSRVYTFEMQIIKAKDNFAGNY-------------------------------- 90
Query: 513 VTCRAENVAGSVTCTATLSLLPESEVTDVMESP 545
C +C+ L + + T ++S
Sbjct: 91 -RCEVTYKDKFDSCSFDLEVHESTGTTPNIDSG 122
Score = 59.6 bits (144), Expect = 4e-11
Identities = 17/115 (14%), Positives = 31/115 (26%), Gaps = 24/115 (20%)
Query: 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGT---PMKEGKEV 354
TV E + +V++ P + W K GK +
Sbjct: 17 GTVKVGEDITFIAKVKAEDL----------------LRKPTIKWFKGKWMDLASKAGKHL 60
Query: 355 TIYQDTD-----GLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEES 404
+ + + ++ I + AG Y C + L V E +
Sbjct: 61 QLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGT 115
Score = 59.2 bits (143), Expect = 6e-11
Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 15/110 (13%)
Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTP---TPEVKWFKNG-KEIVSK----------- 255
+ Q V +T A+ P +KWFK ++ SK
Sbjct: 7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF 66
Query: 256 DIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAET 305
+ ++ ++ I + G Y V + S + + + T
Sbjct: 67 ERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 116
Score = 30.7 bits (69), Expect = 0.42
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 544 SPRFIKTPETAKVMDGQSVLFTAQVG 569
FI+ P+ V G+ + F A+V
Sbjct: 7 GILFIEKPQGGTVKVGEDITFIAKVK 32
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 88.4 bits (219), Expect = 1e-18
Identities = 29/90 (32%), Positives = 37/90 (41%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
PRFI K + Q A F C+V P +TW KD EL + Y+ + L I
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 542
Query: 67 INPTKEDIGVYTCKATNIGGVATCSANLIV 96
+D G YT +A N G L V
Sbjct: 543 NRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 79.5 bits (196), Expect = 8e-16
Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 2/99 (2%)
Query: 98 EKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFN 157
+ S P+F A V P + W++ E+ + +N
Sbjct: 475 FWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYN 534
Query: 158 PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
+ L+I+ D+ Y+V+A N++G E L
Sbjct: 535 G--NDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571
Score = 72.6 bits (178), Expect = 1e-13
Identities = 27/165 (16%), Positives = 41/165 (24%), Gaps = 14/165 (8%)
Query: 244 KWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA 303
W G TK+ TK + + +
Sbjct: 412 PWLTPGNAPGRDSQIPSSRYTKIRDSIKTKYDAWPEPLPPLGRISNYSSLRKHRPQEYSI 471
Query: 304 ETVMMDVRVESHPTASFQWFIHSEPVV----------VTGKPTPLVTWSHDGTPMKEGKE 353
D S F + V V P+VTW D +K+ +
Sbjct: 472 RDAFWD---RSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVK 528
Query: 354 VTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398
+ L I+ V ++ G Y+ A N G L V
Sbjct: 529 YMKRYN-GNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 69.1 bits (169), Expect = 2e-12
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 3/91 (3%)
Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVI 268
P + V + + + P V W K+ +E+ N L I
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 542
Query: 269 KQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
+ G+Y +R N G + +T
Sbjct: 543 NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT 573
Score = 63.7 bits (155), Expect = 7e-11
Identities = 19/132 (14%), Positives = 33/132 (25%), Gaps = 35/132 (26%)
Query: 399 EEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEF 458
+ S P+F A V P + W++ E+ + +
Sbjct: 474 AFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRY 533
Query: 459 NPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAE 518
N + L+I+ D+ Y T RA+
Sbjct: 534 NG--NDYGLTINRVKGDDKGEY---------------------------------TVRAK 558
Query: 519 NVAGSVTCTATL 530
N G+ L
Sbjct: 559 NSYGTKEEIVFL 570
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 80.1 bits (198), Expect = 1e-18
Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 9/98 (9%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE----HYLITTVESVS 62
+ ++ +V + W K+G EL + Y
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKE 100
L + +ED G Y C A LIV EK+
Sbjct: 68 ILIFSDVVQEDRGRYQVITNG----GQCEAELIVEEKQ 101
Score = 64.7 bits (158), Expect = 4e-13
Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 7/97 (7%)
Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT- 160
S PL+ + V+ + W + E+ ++ +
Sbjct: 5 SSGPVLIVTPLEDQQVFVGDRVEMAVEVS-EEGAQVMWMKNGVELTREDSFKARYRFKKD 63
Query: 161 -GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
+L S+ +D Y V +C A L+
Sbjct: 64 GKRHILIFSDVVQEDRGRYQVIT----NGGQCEAELI 96
Score = 63.9 bits (156), Expect = 7e-13
Identities = 11/89 (12%), Positives = 26/89 (29%), Gaps = 3/89 (3%)
Query: 404 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT- 462
S PL+ + V+ + W + E+ ++ +
Sbjct: 5 SSGPVLIVTPLEDQQVFVGDRVEMAVEVS-EEGAQVMWMKNGVELTREDSFKARYRFKKD 63
Query: 463 -GECVLSISEATPQDEAVYSVKASSTETK 490
+L S+ +D Y V + + +
Sbjct: 64 GKRHILIFSDVVQEDRGRYQVITNGGQCE 92
Score = 63.1 bits (154), Expect = 1e-12
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 12/96 (12%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-------IETKDN 262
IV PL+ V V + E +V W KNG E+ +D +
Sbjct: 7 GPVLIVTPLEDQQVFVGDRVEMAVE-VSEEGAQVMWMKNGVELTREDSFKARYRFKKDGK 65
Query: 263 VTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
L+ ++ G+Y++ + + +
Sbjct: 66 RHILIFSDVVQEDRGRYQV----ITNGGQCEAELIV 97
Score = 58.9 bits (143), Expect = 4e-11
Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 29/109 (26%)
Query: 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKE---- 353
V + V M V V + V W +G +
Sbjct: 18 QQVFVGDRVEMAVEV--------------------SEEGAQVMWMKNGVELTREDSFKAR 57
Query: 354 VTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKE 402
+D L S+V E+ G Y A L VEEK+
Sbjct: 58 YRFKKD-GKRHILIFSDVVQEDRGRYQVIT----NGGQCEAELIVEEKQ 101
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 79.8 bits (197), Expect = 2e-18
Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 9/91 (9%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
+ + + + TC+V P P + W KDG L + L
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPL---------PLPPSPVLI 60
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIV 96
+ +D G Y+C AT+ S + +
Sbjct: 61 LPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
Score = 72.4 bits (178), Expect = 7e-16
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLV 267
LE +V + V TVTL E P+P++ W K+G + L+
Sbjct: 7 GLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPL------PPSPVLI 60
Query: 268 IKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
+ + + G Y + + + S +V+I++ E
Sbjct: 61 LPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIE 95
Score = 65.9 bits (161), Expect = 1e-13
Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 11/94 (11%)
Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
E + + TL V +P+P I W + +
Sbjct: 9 EEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPV---------- 58
Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVL 197
L + E PQD+ YS A ++ + + +
Sbjct: 59 -LILPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
Score = 62.0 bits (151), Expect = 3e-12
Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 20/108 (18%)
Query: 294 GSVTITVAEAETVMM---DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKE 350
GS + E +++ V T + V +P+P + W DG P+
Sbjct: 1 GSSGSSGLEEVQLVVEPEGGAVAPGGTVTLT-------CEVPAQPSPQIHWMKDGVPLPL 53
Query: 351 GKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398
L + E+ P++ G YSC A + + +++
Sbjct: 54 PPSPV----------LILPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
Score = 59.7 bits (145), Expect = 2e-11
Identities = 17/127 (13%), Positives = 31/127 (24%), Gaps = 44/127 (34%)
Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
E + + TL V +P+P I W + +
Sbjct: 9 EEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPV---------- 58
Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
L + E PQD+ Y +C A + +
Sbjct: 59 -LILPEIGPQDQGTY---------------------------------SCVATHSSHGPQ 84
Query: 526 CTATLSL 532
+ +S+
Sbjct: 85 ESRAVSI 91
Score = 29.7 bits (67), Expect = 0.70
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 536 SEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
S + +E + + PE V G +V T +V
Sbjct: 2 SSGSSGLEEVQLVVEPEGGAVAPGGTVTLTCEV 34
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 80.6 bits (199), Expect = 2e-18
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 14/116 (12%)
Query: 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
E PR +E ++ + +PA CK EG P PT+ W K G + + + +
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 63 --TLEIIN-----PTKEDIGVYTCKATN-IGGVATCSANLIVLEKEESGEAPKFTK 110
+L + ++ D GVY C A N +G + A+L V A
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA------AAAHHHH 115
Score = 58.3 bits (141), Expect = 9e-11
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 11/103 (10%)
Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKL---- 266
P IV L+V K TL + G PTP ++W+K G+ + + + + + L
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 267 ------VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA 303
V + ++ G Y N GEA S ++ VA A
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEA-VSHDASLEVAAA 110
Score = 55.2 bits (133), Expect = 1e-09
Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 164
P+ + +I PATL GRPTP+I WY+G E + D
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 165 LSI-----SEATPQDEAVYSVKAVNTFGRAECR 192
L + DE VY A N G A
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSH 101
Score = 54.4 bits (131), Expect = 2e-09
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 13/89 (14%)
Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVT---IYQDTDG---LCKLAISEVFPENAGLYSCTAV 384
G+PTP + W G ++ K+ G ++ + G+Y C A
Sbjct: 33 AEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVAR 92
Query: 385 NPVGEAVAA-ATLAVEEKEESGEAPKFTK 412
N +GEAV+ A+L V A
Sbjct: 93 NYLGEAVSHDASLEVA------AAAHHHH 115
Score = 52.5 bits (126), Expect = 1e-08
Identities = 32/160 (20%), Positives = 44/160 (27%), Gaps = 53/160 (33%)
Query: 394 ATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNG 453
+L E+ P+ + +I PATL GRPTP+I WY+G E + D
Sbjct: 1 GSLRQED-----FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKD 55
Query: 454 HTMEFNPTTGECVLSI-----SEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRD 508
L + DE VY
Sbjct: 56 DPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVY---------------------------- 87
Query: 509 QIGDVTCRAENVAGS-VTCTATLSLLPESEVTDVMESPRF 547
C A N G V+ A+L V +
Sbjct: 88 -----VCVARNYLGEAVSHDASLE---------VAAAAHH 113
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 79.7 bits (197), Expect = 2e-18
Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 7/95 (7%)
Query: 6 APRFIEKIQPVVSHQE-QPALFTCKVEGHPLPTMTWQKDGTELHAT-EHYLITTVESVST 63
+ F +K++P + T ++ + W K+G E+ + Y+ ++ + T
Sbjct: 15 STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRT 73
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
L I + D Y C CS L V E
Sbjct: 74 LTISQCSLADDAAYQCVVGG----EKCSTELFVKE 104
Score = 70.9 bits (174), Expect = 3e-15
Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 10/108 (9%)
Query: 197 LRKATTIDKPRVLEAPTIVRPLQALL-VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSK 255
+ ++ + L+ V K + L E EVKW KNG+EI
Sbjct: 1 MHHHHHHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMS 59
Query: 256 D----IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
E+ L I Q + Y+ G + S + +
Sbjct: 60 GSKYIFESIGAKRTLTISQCSLADDAAYQCV----VGGEKCSTELFVK 103
Score = 62.4 bits (152), Expect = 3e-12
Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 24/104 (23%)
Query: 297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTI 356
V++ + + V + V W +G ++ I
Sbjct: 25 AYQVSKGHKIRLTVEL--------------------ADHDAEVKWLKNGQEIQMSGSKYI 64
Query: 357 YQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400
++ L IS+ + Y C G + L V+E
Sbjct: 65 FESIGAKRTLTISQCSLADDAAYQCVV----GGEKCSTELFVKE 104
Score = 61.2 bits (149), Expect = 7e-12
Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 7/94 (7%)
Query: 104 EAPKFTKPLKPVI-AEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 162
++ F K L+P L + + W + +EI F +
Sbjct: 14 KSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSK-YIFESIGAK 71
Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
L+IS+ + D+A Y G +C L
Sbjct: 72 RTLTISQCSLADDAAYQCVV----GGEKCSTELF 101
Score = 60.1 bits (146), Expect = 2e-11
Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 392 AAATLAVEEKEESGEAPKFTKPLKPVI-AEAQSPATLKATVTGRPTPSICWYRGKEEILP 450
+++EK+ + F K L+P L + + W + +EI
Sbjct: 4 HHHHSSMDEKK----STAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQM 58
Query: 451 DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTET 489
F + L+IS+ + D+A Y +
Sbjct: 59 SGSK-YIFESIGAKRTLTISQCSLADDAAYQCVVGGEKC 96
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 82.2 bits (203), Expect = 2e-18
Identities = 25/193 (12%), Positives = 53/193 (27%), Gaps = 41/193 (21%)
Query: 225 KDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK------------LVIKQTT 272
+D + + + ++KW K + + K L IK
Sbjct: 15 QDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLK 74
Query: 273 KKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVV-- 330
Y++ + + G+ + + E + +
Sbjct: 75 TDDQDIYKVSIYDTKGKNVLEKIFDLKIQE-------------RVSKPKISWTCINTTLT 121
Query: 331 --VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
V P + DG +K + V ++ T + + CTA N V
Sbjct: 122 CEVMNGTDPELNLYQDGKHLKLSQRVITHKWT------------TSLSAKFKCTAGNKVS 169
Query: 389 EAVAAATLAVEEK 401
+ + ++ EK
Sbjct: 170 KESSVEPVSCPEK 182
Score = 75.7 bits (186), Expect = 4e-16
Identities = 25/196 (12%), Positives = 55/196 (28%), Gaps = 31/196 (15%)
Query: 113 KPVIAEAQSPATLK--ATVTGRPTPSICWYRGKEEI----LPDNGHTMEFNPT---TGEC 163
L + I W + ++ T + T
Sbjct: 7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG 66
Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLV 223
L I D+ +Y V +T G+ L ++ E + + +
Sbjct: 67 TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDL---------KIQERVS-----KPKIS 112
Query: 224 PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRV 283
TL E PE+ +++GK + +++ + T + K++
Sbjct: 113 WTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQ--------RVITHKWTTSLSAKFKCTA 164
Query: 284 VNEAGEARTSGSVTIT 299
N+ + + V+
Sbjct: 165 GNKVSKESSVEPVSCP 180
Score = 73.4 bits (180), Expect = 2e-15
Identities = 24/187 (12%), Positives = 48/187 (25%), Gaps = 37/187 (19%)
Query: 22 QPALFTCK--VEGHPLPTMTWQKDGTELHATEHYLIT---------TVESVSTLEIINPT 70
Q + + W+K + + + TL+I +
Sbjct: 15 QDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLK 74
Query: 71 KEDIGVYTCKATNIGG--VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKAT 128
+D +Y + G V +L + E + KP I+ TL
Sbjct: 75 TDDQDIYKVSIYDTKGKNVLEKIFDLKIQE-----------RVSKPKISWTCINTTLTCE 123
Query: 129 VTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGR 188
V P + Y+ + + + + T A + A N +
Sbjct: 124 VMNGTDPELNLYQDGKHLKLSQR-------------VITHKWTTSLSAKFKCTAGNKVSK 170
Query: 189 AECRANL 195
+
Sbjct: 171 ESSVEPV 177
Score = 64.5 bits (157), Expect = 3e-12
Identities = 26/212 (12%), Positives = 50/212 (23%), Gaps = 63/212 (29%)
Query: 328 PVVVTGKPTPLVTWSHDGTP-----MKEGKEVTIYQDT---DGLCKLAISEVFPENAGLY 379
P + W ++ KE +DT L I + ++ +Y
Sbjct: 22 PSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIY 81
Query: 380 SCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSI 439
+ + G+ V ++ +E + KP I+ TL V P +
Sbjct: 82 KVSIYDTKGKNVLEKIFDLKIQE---------RVSKPKISWTCINTTLTCEVMNGTDPEL 132
Query: 440 CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSV 499
Y+ + +
Sbjct: 133 NLYQDGKHLKLS----------------------------------------------QR 146
Query: 500 LLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
++ K T C A N + +S
Sbjct: 147 VITHKWTTSLSAKFKCTAGNKVSKESSVEPVS 178
Score = 56.8 bits (137), Expect = 1e-09
Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 11/86 (12%)
Query: 14 QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKED 73
+P +S TC+V P + +DG L + + T
Sbjct: 108 KPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLS-----------QRVITHKWTTSL 156
Query: 74 IGVYTCKATNIGGVATCSANLIVLEK 99
+ C A N + + EK
Sbjct: 157 SAKFKCTAGNKVSKESSVEPVSCPEK 182
Score = 38.7 bits (90), Expect = 0.002
Identities = 18/124 (14%), Positives = 37/124 (29%), Gaps = 14/124 (11%)
Query: 415 KPVIAEAQSPATLK--ATVTGRPTPSICWYRGKEEI----LPDNGHTMEFNPT---TGEC 465
L + I W + ++ T + T
Sbjct: 7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG 66
Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
L I D+ +Y V T+ K + + + + ++++ +I TC N ++T
Sbjct: 67 TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKI-SWTC--INT--TLT 121
Query: 526 CTAT 529
C
Sbjct: 122 CEVM 125
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 79.7 bits (197), Expect = 3e-18
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 6/97 (6%)
Query: 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
L +F E ++ + + A+ C++ + W K L + + + +
Sbjct: 16 RALPIKFTEGLRNEEATEGATAVLRCELSKMA--PVEWWKGHETLRDGDRHSLRQDGARC 73
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
L+I ED G Y C G SA L V
Sbjct: 74 ELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAM 106
Score = 74.7 bits (184), Expect = 1e-16
Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 13/114 (11%)
Query: 83 NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRG 142
+ G SA L V KFT+ L+ A + A L+ ++ + W++G
Sbjct: 2 SSGSSGRTSAMLTVRAL-----PIKFTEGLRNEEATEGATAVLRCELSKMAP--VEWWKG 54
Query: 143 KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
E + + H++ + C L I +D Y G+ A L
Sbjct: 55 HETLRDGDRHSLRQD--GARCELQIRGLVAEDAGEYLCMC----GKERTSAMLT 102
Score = 72.0 bits (177), Expect = 1e-15
Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 16/119 (13%)
Query: 285 NEAGEARTSGSVTITVAEAE--TVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWS 342
+ RTS +T+ + + + TA + ++ V W
Sbjct: 2 SSGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLR-------CELSKMAP--VEWW 52
Query: 343 HDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEK 401
+++G ++ QD C+L I + E+AG Y C G+ +A L V
Sbjct: 53 KGHETLRDGDRHSLRQD-GARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAM 106
Score = 67.0 bits (164), Expect = 8e-14
Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 19/124 (15%)
Query: 184 NTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEV 243
++ A L +R L+ + +T L E + V
Sbjct: 2 SSGSSGRTSAMLTVRAL----------PIKFTEGLRNEEATEGATAVLRCELSKMA--PV 49
Query: 244 KWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
+W+K + + D + +L I+ + G+Y G+ RTS +T+
Sbjct: 50 EWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLC----MCGKERTSAMLTVRA 105
Query: 301 AEAE 304
+
Sbjct: 106 MPSG 109
Score = 67.0 bits (164), Expect = 8e-14
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 9/103 (8%)
Query: 388 GEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEE 447
+A L V KFT+ L+ A + A L+ ++ + W++G E
Sbjct: 5 SSGRTSAMLTVRAL-----PIKFTEGLRNEEATEGATAVLRCELSKMAP--VEWWKGHET 57
Query: 448 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK 490
+ + H++ + C L I +D Y T
Sbjct: 58 LRDGDRHSLRQD--GARCELQIRGLVAEDAGEYLCMCGKERTS 98
Score = 31.6 bits (72), Expect = 0.19
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 10/51 (19%)
Query: 519 NVAGSVTCTATLSLLPESEVTDVMESP-RFIKTPETAKVMDGQSVLFTAQV 568
+ S +A L+ V P +F + + +G + + ++
Sbjct: 2 SSGSSGRTSAMLT---------VRALPIKFTEGLRNEEATEGATAVLRCEL 43
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 80.1 bits (197), Expect = 4e-18
Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 13/104 (12%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYL----------- 54
F++ C+ G P+P + W +G + L
Sbjct: 21 MAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHI 80
Query: 55 --ITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
+ ST+ I +ED G Y C+A+N + V
Sbjct: 81 HATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124
Score = 73.5 bits (180), Expect = 7e-16
Identities = 19/122 (15%), Positives = 27/122 (22%), Gaps = 11/122 (9%)
Query: 100 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILP----------- 148
F + L G P P I W+ +
Sbjct: 16 PRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARL 75
Query: 149 DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRV 208
D H +SI +D Y +A N R ++ V
Sbjct: 76 DRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQAVVLV 135
Query: 209 LE 210
LE
Sbjct: 136 LE 137
Score = 69.7 bits (170), Expect = 2e-14
Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 16/115 (13%)
Query: 206 PRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK 265
PR V+ + +V L E G+P PE++W+ G+ + D
Sbjct: 16 PRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARL 75
Query: 266 ----------------LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAE 304
+ I ++ TG YE R N+ + + + A+
Sbjct: 76 DRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQ 130
Score = 64.7 bits (157), Expect = 1e-12
Identities = 19/129 (14%), Positives = 27/129 (20%), Gaps = 22/129 (17%)
Query: 402 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 461
F + L G P P I W+ + +
Sbjct: 16 PRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWD---- 71
Query: 462 TGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVA 521
A Y A+ST + I + + G CRA N
Sbjct: 72 ------GARLDRVHIHATYHQHAAST------------ISIDTLVEEDTGTYECRASNDP 113
Query: 522 GSVTCTATL 530
T
Sbjct: 114 DRNHLTRAP 122
Score = 57.7 bits (139), Expect = 2e-10
Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 12/80 (15%)
Query: 331 VTGKPTPLVTWSHDGTPMKEGKE------------VTIYQDTDGLCKLAISEVFPENAGL 378
G P P + W +G + + ++I + E+ G
Sbjct: 45 AVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGT 104
Query: 379 YSCTAVNPVGEAVAAATLAV 398
Y C A N V
Sbjct: 105 YECRASNDPDRNHLTRAPRV 124
Score = 28.8 bits (64), Expect = 2.5
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 538 VTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
V F++ P + + G SV +
Sbjct: 15 VPRGSHMAGFVQAPLSQQRWVGGSVELHCEA 45
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 81.6 bits (201), Expect = 5e-18
Identities = 27/193 (13%), Positives = 47/193 (24%), Gaps = 32/193 (16%)
Query: 22 QPALFTC---KVEGHPLPTMTWQKDG-----------------TELHATEHYLITTVESV 61
+ T +V P ++W K G E + I +
Sbjct: 7 ERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANT 66
Query: 62 STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQS 121
L + G Y C+ T +L V++ + + S
Sbjct: 67 FFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKP------LTLSVHSERSQFPDFS 120
Query: 122 PATLKATVTGRPTPSICWYRGK----EEILPDNGHTMEFNPTTGECVLSISEATPQDEAV 177
T+ TV P P + W + + G E + + V
Sbjct: 121 VLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLS--VAVDLSLPKPWHLP 178
Query: 178 YSVKAVNTFGRAE 190
+ N A
Sbjct: 179 VTCVGKNDKEEAH 191
Score = 80.8 bits (199), Expect = 1e-17
Identities = 36/243 (14%), Positives = 62/243 (25%), Gaps = 47/243 (19%)
Query: 298 ITVAEAETVMMD---VRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEV 354
+T E V + RV P WF + G+ L+ H E
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWF-----KLGPGEEQVLIGRMHHDVIFIEWPFR 55
Query: 355 TIYQ--DTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTK 412
+ + L ++ + G Y C E L+V + +
Sbjct: 56 GFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKP------LTLSV 109
Query: 413 PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEA 472
+ S T+ TV P P + W
Sbjct: 110 HSERSQFPDFSVLTVTCTVNAFPHPHVQWLM----------------------------- 140
Query: 473 TPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532
+ + A++ DG+ SV + + + VTC +N
Sbjct: 141 --PEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGVYVSGY 198
Query: 533 LPE 535
L +
Sbjct: 199 LSQ 201
Score = 72.0 bits (176), Expect = 1e-14
Identities = 35/196 (17%), Positives = 52/196 (26%), Gaps = 40/196 (20%)
Query: 227 STVTLEAEY---TGTPTPEVKWFKNGKEIVSK--------------------DIETKDNV 263
VTL + + + P EV WFK G DI N
Sbjct: 7 ERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANT 66
Query: 264 TKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMM---DVRVESHPTASF 320
LV+ G Y R+ GE + ++V + T+ + + +
Sbjct: 67 FFLVVTAANISHDGNYLCRMKL--GETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTV 124
Query: 321 QWFIHSEPVVVTGKPTPLVTWSH----DGTPMKEGKEVTIYQDTDGLCKLAISEVFPENA 376
V P P V W + P V +D L +
Sbjct: 125 T-------CTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDG-SLSVAVDLSLPKPWH 176
Query: 377 GLYSCTAVNPVGEAVA 392
+C N EA
Sbjct: 177 LPVTCVGKNDKEEAHG 192
Score = 68.5 bits (167), Expect = 2e-13
Identities = 29/202 (14%), Positives = 50/202 (24%), Gaps = 36/202 (17%)
Query: 115 VIAEAQSPATLKAT---VTGRPTPSICWYRGKEEILPDNGHTMEFN-------------- 157
V A TL + V+ P + W++ M +
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60
Query: 158 -PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVR 216
+ L ++ A + Y + + +L V++ T+
Sbjct: 61 HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLS-----------VVKPLTLSV 109
Query: 217 PLQALLVPKDSTVTLEAEYTGTPTPEVKW-FKNGKEIVSKDIETKDNVTK------LVIK 269
+ P S +T+ P P V+W G E K V
Sbjct: 110 HSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDL 169
Query: 270 QTTKKTTGKYEIRVVNEAGEAR 291
K N+ EA
Sbjct: 170 SLPKPWHLPVTCVGKNDKEEAH 191
Score = 61.2 bits (148), Expect = 5e-11
Identities = 16/86 (18%), Positives = 22/86 (25%), Gaps = 4/86 (4%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQ-KDGTELHATEHYLITTVESVSTLE 65
+ TC V P P + W +G E T E +L
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLS 164
Query: 66 II---NPTKEDIGVYTCKATNIGGVA 88
+ + K TC N A
Sbjct: 165 VAVDLSLPKPWHLPVTCVGKNDKEEA 190
Score = 56.2 bits (135), Expect = 3e-09
Identities = 22/152 (14%), Positives = 39/152 (25%), Gaps = 30/152 (19%)
Query: 417 VIAEAQSPATLKAT---VTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEAT 473
V A TL + V+ P + W++ M + +
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHH-----DVIFIEWP-- 53
Query: 474 PQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533
I N L+++ G+ CR + VT LS
Sbjct: 54 -----------FRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLS-- 100
Query: 534 PESEVTDVMESPRFIKTPETAKVMDGQSVLFT 565
V++ E ++ D + T
Sbjct: 101 -------VVKPLTLSVHSERSQFPDFSVLTVT 125
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 81.2 bits (200), Expect = 6e-18
Identities = 26/202 (12%), Positives = 50/202 (24%), Gaps = 44/202 (21%)
Query: 13 IQPVVSHQE-QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITT-------------- 57
++ VV ++ TC W+ T
Sbjct: 1 MKKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRR 60
Query: 58 ---VESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKP 114
+ L I N ED Y C+ + L+V +
Sbjct: 61 SLWDQGNFPLIIKNLKIEDSDTYICEVED----QKEEVQLLVFGLTAN----------SD 106
Query: 115 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 174
TL +PS+ + + + LS+S+ QD
Sbjct: 107 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGK------------TLSVSQLELQD 154
Query: 175 EAVYSVKAVNTFGRAECRANLV 196
++ + + E + ++V
Sbjct: 155 SGTWTCTVLQNQKKVEFKIDIV 176
Score = 71.2 bits (174), Expect = 2e-14
Identities = 25/243 (10%), Positives = 56/243 (23%), Gaps = 62/243 (25%)
Query: 297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTI 356
+ + +TV + + F W ++ ++ + + + + +
Sbjct: 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILG---NQGSFLTKGPSKLNDRADSRR 60
Query: 357 YQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKP 416
G L I + E++ Y C + E V +
Sbjct: 61 SLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEE-VQLLVFGLTANS-------------D 106
Query: 417 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 476
TL +PS+ + + + LS+S+ QD
Sbjct: 107 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGK------------TLSVSQLELQD 154
Query: 477 EAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPES 536
+ TC V + +L
Sbjct: 155 SGTW---------------------------------TCTVLQNQKKVEFKIDIVVLAFQ 181
Query: 537 EVT 539
+ +
Sbjct: 182 KAS 184
Score = 69.6 bits (170), Expect = 6e-14
Identities = 22/192 (11%), Positives = 56/192 (29%), Gaps = 45/192 (23%)
Query: 227 STVTLEAEYTGTPTPEVKWFKNGKEIV--------------------SKDIETKDNVTKL 266
TV L + + + W + + + S+ L
Sbjct: 11 DTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 70
Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHS 326
+IK + + Y V ++ E + + + T D + + +
Sbjct: 71 IIKNLKIEDSDTYICEVEDQKEEVQL---LVFGL----TANSDTHLLQGQSLTLT----- 118
Query: 327 EPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNP 386
+ +P V +G + L++S++ +++G ++CT +
Sbjct: 119 --LESPPGSSPSVQCRSPRGKNIQGGKT-----------LSVSQLELQDSGTWTCTVLQN 165
Query: 387 VGEAVAAATLAV 398
+ + V
Sbjct: 166 QKKVEFKIDIVV 177
Score = 67.7 bits (165), Expect = 3e-13
Identities = 24/199 (12%), Positives = 52/199 (26%), Gaps = 41/199 (20%)
Query: 115 VIAEAQSPATLKATVTGRPTPSICWYRGKEE-ILPDNGHTMEFNPT-------------- 159
V+ + L T + + + W + IL + G + P+
Sbjct: 5 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64
Query: 160 TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ 219
G L I +D Y C + + + T +
Sbjct: 65 QGNFPLIIKNLKIEDSDTY-----------ICEVEDQKEEVQLLVFGLTANSDTHLLQ-- 111
Query: 220 ALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKY 279
++TL E +P V+ + + L + Q + +G +
Sbjct: 112 ------GQSLTLTLESPPGSSPSVQCRSPRGKNIQGG-------KTLSVSQLELQDSGTW 158
Query: 280 EIRVVNEAGEARTSGSVTI 298
V+ + + +
Sbjct: 159 TCTVLQNQKKVEFKIDIVV 177
Score = 65.8 bits (160), Expect = 1e-12
Identities = 11/81 (13%), Positives = 27/81 (33%), Gaps = 10/81 (12%)
Query: 22 QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81
Q T + P++ + + ++ TL + +D G +TC
Sbjct: 113 QSLTLTLESPPGSSPSVQCRSPRGKN----------IQGGKTLSVSQLELQDSGTWTCTV 162
Query: 82 TNIGGVATCSANLIVLEKEES 102
+++VL +++
Sbjct: 163 LQNQKKVEFKIDIVVLAFQKA 183
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 77.8 bits (192), Expect = 9e-18
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 7/97 (7%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELH--ATEHYLITTVESVST 63
++++ ++ + C+V + W K+G E+ Y I
Sbjct: 7 GIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI 65
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKE 100
L I TK D Y+ T SA L V K
Sbjct: 66 LIIEGATKADAAEYSVMTTG----GQSSAKLSVDLKS 98
Score = 67.0 bits (164), Expect = 5e-14
Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVTK 265
+ + L+ V LE E + VKWFKNG+EI+ I +
Sbjct: 7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI 65
Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA 303
L+I+ TK +Y + ++S +++ +
Sbjct: 66 LIIEGATKADAAEYSV----MTTGGQSSAKLSVDLKSG 99
Score = 66.6 bits (163), Expect = 9e-14
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Query: 102 SGEAP-KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160
SG + TK L+ A L+ V+ ++ W++ EEI+P
Sbjct: 3 SGSSGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEG 61
Query: 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
+ +L I AT D A YSV + A L
Sbjct: 62 KKHILIIEGATKADAAEYSVMT----TGGQSSAKLS 93
Score = 65.8 bits (161), Expect = 1e-13
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Query: 404 SGEAP-KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 462
SG + TK L+ A L+ V+ ++ W++ EEI+P
Sbjct: 3 SGSSGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEG 61
Query: 463 GECVLSISEATPQDEAVYSVKASSTETK 490
+ +L I AT D A YSV + ++
Sbjct: 62 KKHILIIEGATKADAAEYSVMTTGGQSS 89
Score = 58.1 bits (141), Expect = 8e-11
Identities = 18/107 (16%), Positives = 29/107 (27%), Gaps = 27/107 (25%)
Query: 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEG--KEVT 355
T E V ++ V + V W +G + G
Sbjct: 17 TTAYCGERVELECEV--------------------SEDDANVKWFKNGEEIIPGPKSRYR 56
Query: 356 IYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKE 402
I + L I +A YS ++A L+V+ K
Sbjct: 57 IRVE-GKKHILIIEGATKADAAEYSVMT----TGGQSSAKLSVDLKS 98
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 77.5 bits (191), Expect = 1e-17
Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
+++ ++ H C++ ++ W +DG +L + IT +E+
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITG----EEVEV 64
Query: 67 INPTKEDIGVYTCKATNIGGVATCSANLIV 96
+ D G+Y C ++ G T ++ V
Sbjct: 65 RDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 62.9 bits (153), Expect = 1e-12
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 335 PTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAA 394
+ W DG + E I + + + + P ++GLY+C +P G
Sbjct: 36 DVQSINWLRDGVQLVESNRTRITGEE-----VEVRDSIPADSGLYACVTSSPSGSDTTYF 90
Query: 395 TLAV 398
++ V
Sbjct: 91 SVNV 94
Score = 57.9 bits (140), Expect = 8e-11
Identities = 14/95 (14%), Positives = 35/95 (36%), Gaps = 2/95 (2%)
Query: 205 KPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVT 264
P + + +++LLV + L + W ++G ++V +
Sbjct: 3 LPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITGEE 61
Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
+ ++ + +G Y + +G T SV ++
Sbjct: 62 -VEVRDSIPADSGLYACVTSSPSGSDTTYFSVNVS 95
Score = 53.6 bits (129), Expect = 2e-09
Identities = 11/97 (11%), Positives = 31/97 (31%), Gaps = 7/97 (7%)
Query: 99 KEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP 158
E + ++ ++ L+ + SI W R +++ N +
Sbjct: 3 LPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITGE- 60
Query: 159 TTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANL 195
+ + ++ P D +Y+ + G ++
Sbjct: 61 -----EVEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92
Score = 47.5 bits (113), Expect = 4e-07
Identities = 14/131 (10%), Positives = 35/131 (26%), Gaps = 40/131 (30%)
Query: 401 KEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP 460
E + ++ ++ L+ + SI W R +++ N +
Sbjct: 3 LPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITGE- 60
Query: 461 TTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENV 520
+ + ++ P D +Y C +
Sbjct: 61 -----EVEVRDSIPADSGLY---------------------------------ACVTSSP 82
Query: 521 AGSVTCTATLS 531
+GS T +++
Sbjct: 83 SGSDTTYFSVN 93
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 77.5 bits (191), Expect = 2e-17
Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 10/107 (9%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
+ V + + + + TC++ P + W KDG E+ + L+ ++V L
Sbjct: 13 WIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLV 71
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPL 112
+ ED G Y C+ + + S + V E +
Sbjct: 72 LPAVQLEDSGEYLCEIDD----ESASFTVTVTEPP-----VRIIYSG 109
Score = 64.4 bits (157), Expect = 6e-13
Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Query: 208 VLEAPTIV---RPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKD 261
+ + + + + V L E P EV+W K+G+E+V ++ +D
Sbjct: 7 GTDVSSWIVYPSGKVYVAAVRLERVVLTCE-LCRPWAEVRWTKDGEEVVESPALLLQKED 65
Query: 262 NVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV 306
V +LV+ + +G+Y E + S +VT+T +
Sbjct: 66 TVRRLVLPAVQLEDSGEYLC----EIDDESASFTVTVTEPPVRII 106
Score = 63.6 bits (155), Expect = 1e-12
Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 30/124 (24%)
Query: 291 RTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKE 350
SG V + E V++ + +P V W+ DG + E
Sbjct: 16 YPSGKVYVAAVRLERVVLTCEL--------------------CRPWAEVRWTKDGEEVVE 55
Query: 351 GKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKF 410
+ + ++ D + +L + V E++G Y C + A+ T+ V E +
Sbjct: 56 SPALLLQKE-DTVRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVTEPP-----VRI 105
Query: 411 TKPL 414
Sbjct: 106 IYSG 109
Score = 60.2 bits (146), Expect = 2e-11
Identities = 16/117 (13%), Positives = 30/117 (25%), Gaps = 19/117 (16%)
Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 164
+ V A L + RP + W + EE++ ++ T
Sbjct: 13 WIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTV--RR 69
Query: 165 LSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAP-TIVRPLQA 220
L + +D Y + + V E P I+ +
Sbjct: 70 LVLPAVQLEDSGEYLCEI----DDESASFTVT-----------VTEPPVRIIYSGPS 111
Score = 56.3 bits (136), Expect = 5e-10
Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 3/84 (3%)
Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466
+ V A L + RP + W + EE++ ++ T
Sbjct: 13 WIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTV--RR 69
Query: 467 LSISEATPQDEAVYSVKASSTETK 490
L + +D Y +
Sbjct: 70 LVLPAVQLEDSGEYLCEIDDESAS 93
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 76.6 bits (188), Expect = 3e-16
Identities = 35/200 (17%), Positives = 66/200 (33%), Gaps = 36/200 (18%)
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDI-------------------ETKDNV 263
V +D+ V L W+K + K+I E +
Sbjct: 11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN 70
Query: 264 TKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMM----DVRVESHPTAS 319
L+ + T K G Y + + +E RT +V V + T + V+ + +
Sbjct: 71 GSLLFQMITMKDMGVYTLDMTDENYR-RTQATVRFHVHQPVTQPFLQVTNTTVKELDSVT 129
Query: 320 FQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLY 379
++ + W + ++ + +T+ Q+ L I + E+AG Y
Sbjct: 130 LTC--------LSNDIGANIQWLFNSQSLQLTERMTLSQNN---SILRIDPIKREDAGEY 178
Query: 380 SCTAVNPVGEAVAA-ATLAV 398
C NPV + L +
Sbjct: 179 QCEISNPVSVRRSNSIKLDI 198
Score = 73.5 bits (180), Expect = 4e-15
Identities = 25/188 (13%), Positives = 44/188 (23%), Gaps = 27/188 (14%)
Query: 22 QPALFTCKVEGHPLPTMTWQKDGTEL--HATEHYLIT--------------TVESVSTLE 65
L L W K T ++ + S +L
Sbjct: 15 NNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLL 74
Query: 66 IINPTKEDIGVYTCKATNI-GGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPAT 124
T +D+GVYT T+ + V + + + T
Sbjct: 75 FQMITMKDMGVYTLDMTDENYRRTQATVRFHV-----HQPVTQPFLQVTNTTVKELDSVT 129
Query: 125 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
L +I W + + T+ + +L I +D Y + N
Sbjct: 130 LTCLSNDIG-ANIQWLFNSQSLQLTERMTL----SQNNSILRIDPIKREDAGEYQCEISN 184
Query: 185 TFGRAECR 192
Sbjct: 185 PVSVRRSN 192
Score = 69.7 bits (170), Expect = 9e-14
Identities = 33/207 (15%), Positives = 71/207 (34%), Gaps = 31/207 (14%)
Query: 111 PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV------ 164
+ P +AE + L + WY+G + + F P +
Sbjct: 6 AVPPQVAEDNN-VLLLVHNLPLALGAFAWYKGNTTAI--DKEIARFVPNSNMNFTGQAYS 62
Query: 165 ----------LSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTI 214
L T +D VY++ + R +A + + +P + T
Sbjct: 63 GREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRT-QATVRFHVHQPVTQPFLQVTNTT 121
Query: 215 VRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEI-VSKDIETKDNVTKLVIKQTTK 273
V+ + +VTL + ++W N + + +++ + N + L I +
Sbjct: 122 VK--------ELDSVTLTCL-SNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKR 172
Query: 274 KTTGKYEIRVVNEAGEARTSGSVTITV 300
+ G+Y+ + N R S S+ + +
Sbjct: 173 EDAGEYQCEISNPVSVRR-SNSIKLDI 198
Score = 67.4 bits (164), Expect = 5e-13
Identities = 33/256 (12%), Positives = 65/256 (25%), Gaps = 56/256 (21%)
Query: 295 SVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKE- 353
+V VAE V++ V +F W+ + + V S+ +
Sbjct: 6 AVPPQVAEDNNVLLLVHNLPLALGAFAWY-KGNTTAIDKEIARFVPNSNMNFTGQAYSGR 64
Query: 354 VTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKP 413
IY + L + ++ G+Y+ + A + +
Sbjct: 65 EIIYSNG----SLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQ----PVTQPFLQ 116
Query: 414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEAT 473
+ + TL +I W + + T+
Sbjct: 117 VTNTTVKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTL----------------- 158
Query: 474 PQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533
N S+L I I R+ G+ C N + ++ L
Sbjct: 159 --------------------SQNNSILRIDPIKREDAGEYQCEISNPVSVRR-SNSIKL- 196
Query: 534 PESEVTDVMESPRFIK 549
D++ P
Sbjct: 197 ------DIIFDPHHHH 206
Score = 57.8 bits (139), Expect = 9e-10
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 4/93 (4%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
+ ++ + TC + W + L TE ++ ++ S L I
Sbjct: 111 TQPFLQVTNTTVKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLS--QNNSILRI 167
Query: 67 INPTKEDIGVYTCKATNIGGVATC-SANLIVLE 98
+ED G Y C+ +N V S L ++
Sbjct: 168 DPIKREDAGEYQCEISNPVSVRRSNSIKLDIIF 200
Score = 47.4 bits (112), Expect = 3e-06
Identities = 24/157 (15%), Positives = 41/157 (26%), Gaps = 27/157 (17%)
Query: 413 PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEA 472
+ P +AE + L + WY+G + I+
Sbjct: 6 AVPPQVAEDNN-VLLLVHNLPLALGAFAWYKGNTTAIDK----------------EIARF 48
Query: 473 TPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532
P ++ +A S I ++G+ LL IT +G T + T
Sbjct: 49 VPNSNMNFTGQAYSGREIIYSNGS---LLFQMITMKDMGVYTLDMTDENYRRTQATV--- 102
Query: 533 LPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVG 569
+ V + SV T
Sbjct: 103 ----RFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSN 135
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 77.6 bits (190), Expect = 4e-16
Identities = 34/252 (13%), Positives = 66/252 (26%), Gaps = 29/252 (11%)
Query: 297 TITVAEAETVMMDVRV---ESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKE 353
+ V TV + W + P T W +G E
Sbjct: 11 EVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDS 70
Query: 354 VT---------IYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG---EAVAAATLAVEEK 401
L ++ V P++ G Y C + A ++ ++
Sbjct: 71 YKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVT 130
Query: 402 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 461
+ + V + + T+ T ++ WY G +N T + P
Sbjct: 131 GHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFF--ENYETGTYQPL 188
Query: 462 TGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVA 521
+ I+ + + S + L+I G V C
Sbjct: 189 ANKNQFGITWFSSEIAGRASFSGARN------------LVIRAAKITDAGRVWCELATGQ 236
Query: 522 GSVTCTATLSLL 533
G + + ++L
Sbjct: 237 GELDADRSSTIL 248
Score = 73.8 bits (180), Expect = 7e-15
Identities = 26/237 (10%), Positives = 54/237 (22%), Gaps = 54/237 (22%)
Query: 14 QPVVSHQEQPALFTCKV---EGHPLPTMTWQKDGTELHATEHYLIT-------------- 56
V H C P ++W K + +T+ +
Sbjct: 10 TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESD 69
Query: 57 ---------------TVESVSTLEIINPTKEDIGVYTCKATNIGG---VATCSANLIVLE 98
+ TL + + +D G Y C+ + ++++
Sbjct: 70 SYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKV 129
Query: 99 KEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP 158
+ + V + + T+ T ++ WY G T +
Sbjct: 130 TGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLA 189
Query: 159 T-------------------TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
+G L I A D + G + +
Sbjct: 190 NKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSST 246
Score = 68.4 bits (166), Expect = 4e-13
Identities = 35/254 (13%), Positives = 56/254 (22%), Gaps = 72/254 (28%)
Query: 212 PTIVRPLQALLVPKDSTVTLEAEYT---GTPTPEVKWFKNGKEIVSKDIE---------- 258
T+ + V TV L Y T P + W K S +
Sbjct: 3 MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEG 62
Query: 259 ----------------------TKDNVTKLVIKQTTKKTTGKYEIRVVNEAG---EARTS 293
L + + G+Y +V + +
Sbjct: 63 LGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDA 122
Query: 294 GSVTITVAEA-------ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGT 346
SV + V + V+V+ + T VTW T
Sbjct: 123 KSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMT-------CPCTDCANANVTWYTGPT 175
Query: 347 PMKEGKEVTIYQDT--------------------DGLCKLAISEVFPENAGLYSCTAVNP 386
+ + T G L I +AG C
Sbjct: 176 FFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATG 235
Query: 387 VGEAVAAATLAVEE 400
GE A + + +
Sbjct: 236 QGELDADRSSTILK 249
Score = 65.7 bits (159), Expect = 3e-12
Identities = 14/113 (12%), Positives = 25/113 (22%), Gaps = 21/113 (18%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS---- 62
+ + V + TC +TW T E + + +
Sbjct: 137 NVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGI 196
Query: 63 -----------------TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
L I D G C+ G + +L+
Sbjct: 197 TWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILK 249
Score = 65.3 bits (158), Expect = 4e-12
Identities = 31/246 (12%), Positives = 50/246 (20%), Gaps = 56/246 (22%)
Query: 109 TKPLKPVIAEAQSPATLKATVT---GRPTPSICWYRGKEEILPDNGHTMEFN-------- 157
V A L + P I W +G +N
Sbjct: 6 RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGF 65
Query: 158 -------------------PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198
L ++ PQD Y + R E +
Sbjct: 66 VESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGL--DAK 123
Query: 199 KATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIE 258
V + + V + + +T+ T V W+ + +
Sbjct: 124 SVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETG 183
Query: 259 TK------------------------DNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSG 294
T LVI+ G+ + GE
Sbjct: 184 TYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADR 243
Query: 295 SVTITV 300
S TI
Sbjct: 244 SSTILK 249
Score = 50.3 bits (119), Expect = 4e-07
Identities = 19/161 (11%), Positives = 40/161 (24%), Gaps = 9/161 (5%)
Query: 411 TKPLKPVIAEAQSPATLKATVT---GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467
V A L + P I W +G +N
Sbjct: 6 RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGF 65
Query: 468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCT 527
S++ + + +AS + + L ++ + G C+ +
Sbjct: 66 VESDSYKESFGDFLGRAS------VANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFG 119
Query: 528 ATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
+ + + T E +V +G + T
Sbjct: 120 LDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPC 160
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 75.8 bits (186), Expect = 6e-16
Identities = 31/209 (14%), Positives = 66/209 (31%), Gaps = 32/209 (15%)
Query: 213 TIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLV----- 267
T+ P + V S+V+LE ++ E++ + + V D + L+
Sbjct: 4 TVTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLP 63
Query: 268 -------IKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASF 320
I + +G+Y V+ A +
Sbjct: 64 LGKALFHIPSVQVRDSGQYRCLVICGAA-----------WDYKYLTVKVKASYMRIDTRI 112
Query: 321 QWFIHSEPVVVT----GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAIS-EVFPEN 375
+ V +T G P V+W + P + + +GL ++ + P+
Sbjct: 113 LEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANT----SHIRTPEGLYQVTSVLRLKPQP 168
Query: 376 AGLYSCTAVNPVGEAVAAATLAVEEKEES 404
+ +SC N + + +A + + E
Sbjct: 169 SRNFSCMFWNAHMKELTSAIIDPLSRMEP 197
Score = 71.6 bits (175), Expect = 2e-14
Identities = 30/202 (14%), Positives = 59/202 (29%), Gaps = 24/202 (11%)
Query: 109 TKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHT-------MEFNPTTG 161
T P + + S +L+ R + R + + ++ +E G
Sbjct: 6 TAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLG 65
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQAL 221
+ + I +D Y + + ++ + R+LE
Sbjct: 66 KALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILE----------- 114
Query: 222 LVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKD---NVTKLVIKQTTKKTTGK 278
VP V L + G P EV W + I T + VT ++ + +
Sbjct: 115 -VPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQ--PSRN 171
Query: 279 YEIRVVNEAGEARTSGSVTITV 300
+ N + TS +
Sbjct: 172 FSCMFWNAHMKELTSAIIDPLS 193
Score = 63.1 bits (153), Expect = 1e-11
Identities = 22/203 (10%), Positives = 39/203 (19%), Gaps = 20/203 (9%)
Query: 14 QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA---------TEHYLITTVESVSTL 64
+ C + + + + +
Sbjct: 10 EVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALF 69
Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPAT 124
I + D G Y C + V +A + +
Sbjct: 70 HIPSVQVRDSGQYRCLVICGAAWDYKYLTVKV-------KASYMRIDTRILEVPGTGEVQ 122
Query: 125 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
L G P + W + P V S+ PQ +S N
Sbjct: 123 LTCQARGYPLAEVSWQNVSVPAN----TSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWN 178
Query: 185 TFGRAECRANLVLRKATTIDKPR 207
+ A + PR
Sbjct: 179 AHMKELTSAIIDPLSRMEPKVPR 201
Score = 55.4 bits (133), Expect = 6e-09
Identities = 28/243 (11%), Positives = 53/243 (21%), Gaps = 55/243 (22%)
Query: 295 SVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEV 354
TV +V ++ + + S V +D + E +
Sbjct: 9 KEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKV-----------ENDTSLQSERATL 57
Query: 355 TIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPL 414
Q G I V ++G Y C + T+ V+
Sbjct: 58 LEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKA-------SYMRIDT 110
Query: 415 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATP 474
+ + L G P + W
Sbjct: 111 RILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPA-------------------------- 144
Query: 475 QDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLP 534
+T +G V + ++ + +C N +A + L
Sbjct: 145 -----------NTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLS 193
Query: 535 ESE 537
E
Sbjct: 194 RME 196
Score = 51.6 bits (123), Expect = 1e-07
Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 2/90 (2%)
Query: 13 IQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKE 72
+ + TC+ G+PL ++WQ ++ T ++ +
Sbjct: 110 TRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPA--NTSHIRTPEGLYQVTSVLRLKPQ 167
Query: 73 DIGVYTCKATNIGGVATCSANLIVLEKEES 102
++C N SA + L + E
Sbjct: 168 PSRNFSCMFWNAHMKELTSAIIDPLSRMEP 197
Score = 38.1 bits (88), Expect = 0.003
Identities = 17/123 (13%), Positives = 35/123 (28%), Gaps = 15/123 (12%)
Query: 411 TKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHT-------MEFNPTTG 463
T P + + S +L+ R + R + + ++ +E G
Sbjct: 6 TAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLG 65
Query: 464 ECVLSISEATPQDEAVYS--------VKASSTETKIMTDGNRSVLLISKITRDQIGDVTC 515
+ + I +D Y K+ R I ++ +TC
Sbjct: 66 KALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTC 125
Query: 516 RAE 518
+A
Sbjct: 126 QAR 128
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 73.4 bits (180), Expect = 6e-16
Identities = 23/101 (22%), Positives = 31/101 (30%), Gaps = 8/101 (7%)
Query: 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLP-TMTWQKDGTELHATEHYLITTVES-- 60
V P I Q + + C + P P + W L + T
Sbjct: 11 VNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIST 70
Query: 61 ----VSTLEIINPTKEDIG-VYTCKATNIGGVATCSANLIV 96
+STL I N + D +Y C A N G T L
Sbjct: 71 EEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111
Score = 58.4 bits (141), Expect = 9e-11
Identities = 21/122 (17%), Positives = 34/122 (27%), Gaps = 13/122 (10%)
Query: 86 GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKE 144
G + S L V P + + A +K + P P I W +
Sbjct: 1 GSSGSSGTLTV------NGPPIISST-QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKEN 53
Query: 145 EILPDNGH----TMEFNPTTGECVLSISEATPQDEA-VYSVKAVNTFGRAECRANLVLRK 199
+ L+IS D +Y+ A N+FG L +
Sbjct: 54 VLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQG 113
Query: 200 AT 201
+
Sbjct: 114 SE 115
Score = 56.8 bits (137), Expect = 4e-10
Identities = 29/146 (19%), Positives = 41/146 (28%), Gaps = 38/146 (26%)
Query: 388 GEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKE 446
G + ++ TL V P + + A +K + P P I W +
Sbjct: 1 GSSGSSGTLTVNG------PPIISST-QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKEN 53
Query: 447 EILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKIT 506
+ Y+V ET +G S L IS I
Sbjct: 54 VLESGTSGR------------------------YTV-----ETISTEEGVISTLTISNIV 84
Query: 507 RDQIGDV-TCRAENVAGSVTCTATLS 531
R + C A N GS T L
Sbjct: 85 RADFQTIYNCTAWNSFGSDTEIIRLK 110
Score = 49.9 bits (119), Expect = 9e-08
Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 14/125 (11%)
Query: 288 GEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPL-VTWSHDGT 346
G + +SG++T+ + + + P P + WS
Sbjct: 1 GSSGSSGTLTVNGPPIISSTQTQHALHGEKGQIK-------CFIRSTPPPDRIAWSWKEN 53
Query: 347 PMKEGKE--VTIYQDTDG---LCKLAISEVFPE-NAGLYSCTAVNPVGEAVAAATLAVEE 400
++ G T+ + + L IS + +Y+CTA N G L +
Sbjct: 54 VLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQG 113
Query: 401 KEESG 405
E SG
Sbjct: 114 SEMSG 118
Score = 46.8 bits (111), Expect = 1e-06
Identities = 14/103 (13%), Positives = 26/103 (25%), Gaps = 11/103 (10%)
Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPE-VKWFKNGKEI---------VSKDIETK 260
P I+ Q ++ TP P+ + W + V +
Sbjct: 13 GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 72
Query: 261 DNVTKLVIKQTTKK-TTGKYEIRVVNEAGEARTSGSVTITVAE 302
++ L I + Y N G + +E
Sbjct: 73 GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 72.0 bits (177), Expect = 8e-16
Identities = 15/92 (16%), Positives = 25/92 (27%), Gaps = 9/92 (9%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
+ + + C G P+P W K+ L T E+ +
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL---------THETKKLYMV 54
Query: 67 INPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
E G Y C N I+++
Sbjct: 55 PYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID 86
Score = 67.0 bits (164), Expect = 4e-14
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQT 271
I + + ST+ L+ G+P P +WFKN + T + ++
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL------THETKKLYMVPYV 57
Query: 272 TKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
+ G Y V N+ S V I + E
Sbjct: 58 DLEHQGTYWCHVYNDRDSQ-DSKKVEIIIDE 87
Score = 60.0 bits (146), Expect = 1e-11
Identities = 9/94 (9%), Positives = 22/94 (23%), Gaps = 11/94 (11%)
Query: 103 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 162
G + S L+ G P P W++ + + +
Sbjct: 1 GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL--------- 51
Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
+ + + Y N + + +
Sbjct: 52 --YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEI 83
Score = 56.6 bits (137), Expect = 2e-10
Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 11/73 (15%)
Query: 329 VVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
V G P P W + P+ + + V E+ G Y C N
Sbjct: 25 CVAVGSPIPHYQWFKNELPLTHETKKL----------YMVPYVDLEHQGTYWCHVYNDRD 74
Query: 389 EAVA-AATLAVEE 400
+ + ++E
Sbjct: 75 SQDSKKVEIIIDE 87
Score = 51.6 bits (124), Expect = 1e-08
Identities = 8/82 (9%), Positives = 19/82 (23%), Gaps = 11/82 (13%)
Query: 405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 464
G + S L+ G P P W++ + + +
Sbjct: 1 GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL--------- 51
Query: 465 CVLSISEATPQDEAVYSVKASS 486
+ + + Y +
Sbjct: 52 --YMVPYVDLEHQGTYWCHVYN 71
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 75.2 bits (184), Expect = 1e-15
Identities = 26/182 (14%), Positives = 51/182 (28%), Gaps = 14/182 (7%)
Query: 14 QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKED 73
++ TC G P +W+ + + + +T + STL + + +
Sbjct: 9 SRYLAQIGDSVSLTCSTTGCESPFFSWRTQ---IDSPLNGKVTNEGTTSTLTMNPVSFGN 65
Query: 74 IGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-- 131
Y C AT + + PK + EA P T+K +V
Sbjct: 66 EHSYLCTATCESRKLEKGIQVEIYSF------PKDPEIHLSGPLEAGKPITVKCSVADVY 119
Query: 132 -RPTPSICWYRGKEEILPDN--GHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGR 188
I +G + + T ++ + V +A
Sbjct: 120 PFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE 179
Query: 189 AE 190
+
Sbjct: 180 MD 181
Score = 65.2 bits (158), Expect = 3e-12
Identities = 27/203 (13%), Positives = 59/203 (29%), Gaps = 11/203 (5%)
Query: 215 VRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKK 274
P L +V+L TG +P W ++ + + + L + +
Sbjct: 5 TTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFG 64
Query: 275 TTGKYEIRVVNEAGEARTSGSVTI-TVAEAETVMMDVRVESHPTASFQ-WFIHSEPVVVT 332
Y E+ + V I + + + + +E+ + + P
Sbjct: 65 NEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPF--- 121
Query: 333 GKPTPLVTWSHDGTPMKEG---KEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
+ MK ++ ++ + V + + C A + E
Sbjct: 122 --DRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE 179
Query: 390 AVAAATLAVEEKEES-GEAPKFT 411
+ T+ KE +PK T
Sbjct: 180 MDSVPTVRQAVKELQVYISPKNT 202
Score = 57.9 bits (139), Expect = 9e-10
Identities = 35/221 (15%), Positives = 61/221 (27%), Gaps = 46/221 (20%)
Query: 330 VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
TG +P +W GK + L ++ V N Y CTA +
Sbjct: 24 STTGCESPFFSWRTQIDSPLNGK----VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRK 79
Query: 390 AVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG---RPTPSICWYRGKE 446
+ + PK + EA P T+K +V I +G
Sbjct: 80 LEKGIQVEIYSF------PKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDH 133
Query: 447 EILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKIT 506
+ E + S ETK + + + +
Sbjct: 134 LM-------------------------KSQEFLEDADRKSLETKSLE------VTFTPVI 162
Query: 507 RDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRF 547
D + CRA+ + + ++ + V SP+
Sbjct: 163 EDIGKVLVCRAKLHIDEM--DSVPTVRQAVKELQVYISPKN 201
Score = 47.5 bits (112), Expect = 3e-06
Identities = 17/156 (10%), Positives = 40/156 (25%), Gaps = 47/156 (30%)
Query: 413 PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEA 472
P +A+ +L + TG +P W +
Sbjct: 7 PESRYLAQIGDSVSLTCSTTGCESPFFSWRTQID-------------------------- 40
Query: 473 TPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532
S K+ +G S L ++ ++ C A + + +
Sbjct: 41 ------------SPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV-- 86
Query: 533 LPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
++ P+ + + + G+ + V
Sbjct: 87 -------EIYSFPKDPEIHLSGPLEAGKPITVKCSV 115
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 70.9 bits (174), Expect = 2e-15
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 8/98 (8%)
Query: 6 APRFIEKIQPVVSHQE---QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
P I Q VS + + TC++ TW KDG ++ +E ++
Sbjct: 7 GPVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRKH 65
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKE 100
L + +D G + C+ + + V +
Sbjct: 66 RLILPEAKVQDSGEFECRTEG----VSAFFGVTVQDPS 99
Score = 60.5 bits (147), Expect = 1e-11
Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 16/115 (13%)
Query: 288 GEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTP 347
G + +SG V I + + + + + TW DG
Sbjct: 1 GSSGSSGPVHILSPQD---KVSLTFTTSERVVLT--------CELSRVDFPATWYKDGQK 49
Query: 348 MKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKE 402
++E + + + D +L + E +++G + C A + V++
Sbjct: 50 VEESELLVVKMD-GRKHRLILPEAKVQDSGEFECRT----EGVSAFFGVTVQDPS 99
Score = 58.2 bits (141), Expect = 8e-11
Identities = 15/99 (15%), Positives = 36/99 (36%), Gaps = 10/99 (10%)
Query: 212 PTIVRP--LQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKL 266
I+ P +L V L E + W+K+G+++ + ++ +L
Sbjct: 9 VHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDGRKHRL 67
Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAET 305
++ + + +G++E R VT+ +
Sbjct: 68 ILPEAKVQDSGEFECR----TEGVSAFFGVTVQDPSGPS 102
Score = 49.3 bits (118), Expect = 9e-08
Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 7/92 (7%)
Query: 403 ESGEAP--KFTKPLKPVIAEAQ--SPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEF 458
SG + P V L ++ WY+ +++ ++
Sbjct: 2 SSGSSGPVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKM 60
Query: 459 NPTTGECVLSISEATPQDEAVYSVKASSTETK 490
+ L + EA QD + +
Sbjct: 61 DGRK--HRLILPEAKVQDSGEFECRTEGVSAF 90
Score = 49.3 bits (118), Expect = 9e-08
Identities = 12/94 (12%), Positives = 25/94 (26%), Gaps = 7/94 (7%)
Query: 101 ESGEAP--KFTKPLKPVIAEAQ--SPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEF 156
SG + P V L ++ WY+ +++ ++
Sbjct: 2 SSGSSGPVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKM 60
Query: 157 NPTTGECVLSISEATPQDEAVYSVKAVNTFGRAE 190
+ L + EA QD + +
Sbjct: 61 DGRK--HRLILPEAKVQDSGEFECRTEGVSAFFG 92
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 72.7 bits (178), Expect = 3e-15
Identities = 27/178 (15%), Positives = 48/178 (26%), Gaps = 29/178 (16%)
Query: 130 TGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV-----LSISEATPQDEAVYSVKAVN 184
+ W RG + F + + L I T D Y+V +
Sbjct: 23 MTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYS 82
Query: 185 TFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVK 244
T G L LR + KP + + S TL E E+K
Sbjct: 83 TNGTRILNKALDLRILEMVSKPMI--------------YWECSNATLTCEVLEGTDVELK 128
Query: 245 WFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
++ + + S + + ++ + VN + + E
Sbjct: 129 LYQGKEHLRSLR--------QKTMSYQWTNLRAPFKCKAVNRVSQESE--MEVVNCPE 176
Score = 70.8 bits (173), Expect = 2e-14
Identities = 30/154 (19%), Positives = 55/154 (35%), Gaps = 22/154 (14%)
Query: 31 EGHPLPTMTWQKDGTELHATEHYLITTVESVS-------TLEIINPTKEDIGVYTCKATN 83
+ + W++ T + + + ++S + L+I N T++D G Y +
Sbjct: 23 MTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYS 82
Query: 84 IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGK 143
G + L + E KP+I S ATL V + Y+GK
Sbjct: 83 TNGTRILNKALDLRILE---------MVSKPMIYWECSNATLTCEVLEGTDVELKLYQGK 133
Query: 144 EEILPDNGHTMEFNPTTG----ECVLS--ISEAT 171
E + TM + T +C +S+ +
Sbjct: 134 EHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQES 167
Score = 68.8 bits (168), Expect = 8e-14
Identities = 24/186 (12%), Positives = 52/186 (27%), Gaps = 31/186 (16%)
Query: 225 KDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK----------LVIKQTTKK 274
+ + EV+W + + + K + L IK T+
Sbjct: 12 HGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRD 71
Query: 275 TTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGK 334
+G Y + V + G + ++ + + E V + A+ V
Sbjct: 72 DSGTYNVTVYSTNGTRILNKALDLRILE--MVSKPMIYWECSNATLT-------CEVLEG 122
Query: 335 PTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAA 394
+ ++ ++ T+ S + + C AVN V +
Sbjct: 123 TDVELKLYQGKEHLRSLRQKTM------------SYQWTNLRAPFKCKAVNRVSQESEME 170
Query: 395 TLAVEE 400
+ E
Sbjct: 171 VVNCPE 176
Score = 64.6 bits (157), Expect = 3e-12
Identities = 32/158 (20%), Positives = 51/158 (32%), Gaps = 21/158 (13%)
Query: 328 PVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCK------LAISEVFPENAGLYSC 381
P V W T + E K G + L I + +++G Y+
Sbjct: 19 PNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNV 78
Query: 382 TAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICW 441
T + G + L + E KP+I S ATL V +
Sbjct: 79 TVYSTNGTRILNKALDLRILE---------MVSKPMIYWECSNATLTCEVLEGTDVELKL 129
Query: 442 YRGKEEILPDNGHTMEFNPTTG----ECVLS--ISEAT 473
Y+GKE + TM + T +C +S+ +
Sbjct: 130 YQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQES 167
Score = 46.5 bits (110), Expect = 4e-06
Identities = 11/81 (13%), Positives = 23/81 (28%), Gaps = 11/81 (13%)
Query: 14 QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKED 73
+P++ + A TC+V + + L S+ +
Sbjct: 103 KPMIYWECSNATLTCEVLEGTDVELKLYQGKEHL-----------RSLRQKTMSYQWTNL 151
Query: 74 IGVYTCKATNIGGVATCSANL 94
+ CKA N + +
Sbjct: 152 RAPFKCKAVNRVSQESEMEVV 172
Score = 38.8 bits (90), Expect = 0.002
Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 10/103 (9%)
Query: 432 TGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV-----LSISEATPQDEAVYSVKASS 486
+ W RG + F + + L I T D Y+V S
Sbjct: 23 MTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYS 82
Query: 487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTAT 529
T + + + ++ +++ I N ++TC
Sbjct: 83 TNGTRILNKALDLRILEMVSKPMI---YWECSNA--TLTCEVL 120
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 73.4 bits (179), Expect = 4e-15
Identities = 28/184 (15%), Positives = 50/184 (27%), Gaps = 27/184 (14%)
Query: 226 DSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVN 285
D +V L + WFK+GK I + K K + K G Y+ +
Sbjct: 18 DGSVLLT---CDAEAKNITWFKDGKMIGFLTEDKK----KWNLGSNAKDPRGMYQCKGSQ 70
Query: 286 EAGEARTSGSVTITVAEAETVMMDVRVESHPTAS-----------------FQWFIHSEP 328
+ + +A+ A ++ I
Sbjct: 71 NKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTT 130
Query: 329 VVVT--GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNP 386
V++T P + W H+ + ++ + L E +G Y C
Sbjct: 131 VILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSL-KEFSELEQSGYYVCYPRGS 189
Query: 387 VGEA 390
E
Sbjct: 190 KPED 193
Score = 66.8 bits (162), Expect = 8e-13
Identities = 33/202 (16%), Positives = 57/202 (28%), Gaps = 34/202 (16%)
Query: 17 VSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGV 76
++ L TC +TW KDG + E + + K+ G+
Sbjct: 14 DYQEDGSVLLTCDA---EAKNITWFKDGKMIGFLT-------EDKKKWNLGSNAKDPRGM 63
Query: 77 YTCKATNIGGVATC------SANLIVLEKEESGEAPKFTKPLKPVIAEAQ----SPATLK 126
Y CK + SA+ + + +A K + + K
Sbjct: 64 YQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYK 123
Query: 127 ATVTGR---------PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATP-QDEA 176
+++G P I W + I D + E LS+ E + +
Sbjct: 124 VSISGTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGS---DEDHLSLKEFSELEQSG 180
Query: 177 VYSVKAVNTFGRAECRANLVLR 198
Y + L LR
Sbjct: 181 YYVCYPRGSKPEDA-NFYLYLR 201
Score = 61.8 bits (149), Expect = 3e-11
Identities = 20/180 (11%), Positives = 42/180 (23%), Gaps = 26/180 (14%)
Query: 131 GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRA- 189
+I W++ + I ++ +Y K +
Sbjct: 26 DAEAKNITWFKDGKMIGFLTEDKK---------KWNLGSNAKDPRGMYQCKGSQNKSKPL 76
Query: 190 ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYT------------- 236
+ + D + +A ++ + Y
Sbjct: 77 QVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCP 136
Query: 237 GTPTPEVKWFKNGKEIV--SKDIETKDNVTKLVIKQTTKKT-TGKYEIRVVNEAGEARTS 293
P E+ W N K I D + L +K+ ++ +G Y E
Sbjct: 137 QYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANF 196
Score = 56.1 bits (134), Expect = 3e-09
Identities = 25/210 (11%), Positives = 46/210 (21%), Gaps = 62/210 (29%)
Query: 333 GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAV- 391
+TW DG + E K + + G+Y C + +
Sbjct: 26 DAEAKNITWFKDGKMIGFLTEDKK--------KWNLGSNAKDPRGMYQCKGSQNKSKPLQ 77
Query: 392 -----AAATLAVEEKEESGEAPKFTKPLKPVIAEAQ----SPATLKATVTGR-------- 434
+A A ++ + +A K + + K +++G
Sbjct: 78 VYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQ 137
Query: 435 -PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT 493
P I W + I D K +
Sbjct: 138 YPGSEILWQHNDKNIGGDEDD-----------------------------------KNIG 162
Query: 494 DGNRSVLLISKITRDQIGDVTCRAENVAGS 523
+ L +Q G C
Sbjct: 163 SDEDHLSLKEFSELEQSGYYVCYPRGSKPE 192
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 72.2 bits (177), Expect = 4e-15
Identities = 28/187 (14%), Positives = 56/187 (29%), Gaps = 33/187 (17%)
Query: 6 APRFIEKIQPVVSH--QEQPALFTCKVEGHPLP-TMTWQKDGTELHATEHYLITTVESVS 62
P+ + K++P + QE TC+ P ++ W +G +
Sbjct: 2 PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIP----------THTQ 51
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
D G YTC+ + +L VL + + E +
Sbjct: 52 PSYRFKANNNDSGEYTCQTGQ--TSLSDPVHLTVLFE------WLVLQTPHLEFQEGE-T 102
Query: 123 ATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
L+ + +P + +++ NG + +F+ SI +A Y
Sbjct: 103 IMLRCHSWKDKPLVKVTFFQ--------NGKSQKFSHLDPT--FSIPQANHSHSGDYHCT 152
Query: 182 AVNTFGR 188
+
Sbjct: 153 GNIGYTL 159
Score = 65.6 bits (160), Expect = 9e-13
Identities = 32/173 (18%), Positives = 58/173 (33%), Gaps = 35/173 (20%)
Query: 223 VPKDSTVTLEAEYTGTPTPE-VKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEI 281
V ++ +VTL + +P + ++WF NG I + + +G+Y
Sbjct: 16 VLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT-------QPSYRFKANNNDSGEYT- 67
Query: 282 RVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVT-----GKPT 336
+ G+ S V +TV V+ F E +++ KP
Sbjct: 68 ---CQTGQTSLSDPVHLTVLFEWLVLQ---------TPHLEFQEGETIMLRCHSWKDKPL 115
Query: 337 PLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
VT+ +G K + D +I + ++G Y CT
Sbjct: 116 VKVTFFQNGKSQK-------FSHLDP--TFSIPQANHSHSGDYHCTGNIGYTL 159
Score = 49.4 bits (118), Expect = 3e-07
Identities = 20/197 (10%), Positives = 44/197 (22%), Gaps = 65/197 (32%)
Query: 331 VTGKPTPL-VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
P + W H+G + + + + ++G Y+C
Sbjct: 28 GARSPESDSIQWFHNGNLIPTHTQPSY-----------RFKANNNDSGEYTCQTGQTSLS 76
Query: 390 AVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLK-ATVTGRPTPSICWYRGKEEI 448
L V + + E + L+ + +P + +++
Sbjct: 77 D--PVHLTVLFE------WLVLQTPHLEFQEGE-TIMLRCHSWKDKPLVKVTFFQ----- 122
Query: 449 LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRD 508
NG + +F+ SI +A Y
Sbjct: 123 ---NGKSQKFSHLDPT--FSIPQANHSHSGDY---------------------------- 149
Query: 509 QIGDVTCRAENVAGSVT 525
C +
Sbjct: 150 -----HCTGNIGYTLFS 161
Score = 49.4 bits (118), Expect = 4e-07
Identities = 12/88 (13%), Positives = 24/88 (27%), Gaps = 9/88 (10%)
Query: 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLITTVESV 61
VL + + + + + + C PL +T+ ++G
Sbjct: 82 TVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQK--------FSHLD 133
Query: 62 STLEIINPTKEDIGVYTCKATNIGGVAT 89
T I G Y C + +
Sbjct: 134 PTFSIPQANHSHSGDYHCTGNIGYTLFS 161
Score = 32.5 bits (74), Expect = 0.21
Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 12/71 (16%)
Query: 495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETA 554
+ K + G+ TC+ + S + L V+ ++TP
Sbjct: 48 THTQPSYRFKANNNDSGEYTCQTGQTSLS----DPVHL-------TVLFEWLVLQTPHLE 96
Query: 555 KVMDGQSVLFT 565
+G++++
Sbjct: 97 -FQEGETIMLR 106
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 72.6 bits (177), Expect = 2e-14
Identities = 26/274 (9%), Positives = 62/274 (22%), Gaps = 68/274 (24%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKV---EGHPLPTMTWQKDGTELHATEHYLI-------- 55
P + H + L C V E + + W + A+E+ L
Sbjct: 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65
Query: 56 ------------TTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESG 103
T + +L + + K D G+YTC+ + +
Sbjct: 66 TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWV----- 120
Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTP---SICWYRGKEEILPD----------- 149
+ + + ++ ++ + W +
Sbjct: 121 ----LPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMR 176
Query: 150 -----------NGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198
N + + + + + + D+ +Y+ + L
Sbjct: 177 SGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVL--- 233
Query: 199 KATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLE 232
V++ K L
Sbjct: 234 --------HVVQDEFQRTISPTPPTDKGQQGILN 259
Score = 69.1 bits (168), Expect = 3e-13
Identities = 29/244 (11%), Positives = 61/244 (25%), Gaps = 53/244 (21%)
Query: 207 RVLEAPTIVRPLQALLVPKDSTVTLEAEYT---GTPTPEVKWFKNGKEIVSKDI------ 257
R P + L V +V + V W + + + +
Sbjct: 1 RSQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYS 60
Query: 258 ------------------ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
++ + L+++ K G Y + + V +
Sbjct: 61 NLSVPTGRFQNRSHLVGDTFHNDGS-LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW 119
Query: 300 VAEAETVMMDVRV-------------ESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGT 346
V E + VRV E W S V
Sbjct: 120 VLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGS----HTEEETVLSYDSNM 175
Query: 347 PMKEGKEVTIYQD--------TDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398
+ + + +++ + + + V + G+Y+C+ E+ L V
Sbjct: 176 RSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHV 235
Query: 399 EEKE 402
+ E
Sbjct: 236 VQDE 239
Score = 66.4 bits (161), Expect = 3e-12
Identities = 28/259 (10%), Positives = 68/259 (26%), Gaps = 34/259 (13%)
Query: 297 TITVAEAETVMMD---VRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKE 353
+ V E+V+M R E W + + V + + + G+
Sbjct: 14 QLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKD----KDDASEYVLFYYSNLSVPTGRF 69
Query: 354 ---VTIYQDTD-GLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPK 409
+ DT L + +V + G+Y+C V + +
Sbjct: 70 QNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWV--------- 120
Query: 410 FTKPLKPVIAEAQSPATLKATVTGRPTP---SICWYRGKEEILPDNGHTMEFNPTTGECV 466
+ + + ++ ++ + W + +
Sbjct: 121 LPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDS------- 173
Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC 526
++ Q + + T DG+ + + + G TC
Sbjct: 174 -NMRSGKFQSLGRFRNRVDLTGDISRNDGS---IKLQTVKESDQGIYTCSIYVGKLESRK 229
Query: 527 TATLSLLPESEVTDVMESP 545
T L ++ + + +P
Sbjct: 230 TIVLHVVQDEFQRTISPTP 248
Score = 55.6 bits (133), Expect = 9e-09
Identities = 24/251 (9%), Positives = 56/251 (22%), Gaps = 65/251 (25%)
Query: 106 PKFTKPLKPVIAEAQSPATLKATVT---GRPTPSICWYRGKEEILPD------------- 149
P T + + V + + W K++
Sbjct: 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65
Query: 150 -----NGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTID 204
N + + + L + + DE +Y+ + + + L
Sbjct: 66 TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW------ 119
Query: 205 KPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPE---VKWFKNG------------ 249
+ + L V T + T V W +
Sbjct: 120 --------VLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSY 171
Query: 250 ---------------KEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSG 294
+ V + N + ++ + G Y + E+R +
Sbjct: 172 DSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTI 231
Query: 295 SVTITVAEAET 305
+ + E +
Sbjct: 232 VLHVVQDEFQR 242
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 72.6 bits (178), Expect = 5e-14
Identities = 19/103 (18%), Positives = 28/103 (27%), Gaps = 1/103 (0%)
Query: 12 KIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTK 71
K +H C + + + ++ + +V + L
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRN-GDLFFKKVQV 310
Query: 72 EDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKP 114
ED GVYTC A T S L V G P
Sbjct: 311 EDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNAAADP 353
Score = 58.7 bits (142), Expect = 2e-09
Identities = 14/86 (16%), Positives = 23/86 (26%), Gaps = 2/86 (2%)
Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEA 390
+ V S + +G L +V E+ G+Y+C A+
Sbjct: 270 TKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG--DLFFKKVQVEDGGVYTCYAMGETFNE 327
Query: 391 VAAATLAVEEKEESGEAPKFTKPLKP 416
+ L V G P
Sbjct: 328 TLSVELKVYNFTLHGHHDTLNAAADP 353
Score = 46.4 bits (110), Expect = 1e-05
Identities = 14/124 (11%), Positives = 28/124 (22%), Gaps = 3/124 (2%)
Query: 88 ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEIL 147
C + + A T++ + + E++L
Sbjct: 229 LYCMHSKKLHNIFSLDFFNCSEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVL 288
Query: 148 PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPR 207
+ L + +D VY+ A+ L + T
Sbjct: 289 SQGSNGSVSVRNG---DLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHD 345
Query: 208 VLEA 211
L A
Sbjct: 346 TLNA 349
Score = 45.2 bits (107), Expect = 4e-05
Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 10/108 (9%)
Query: 217 PLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNV--TKLVIKQTTKK 274
A T+T+ + +V + ++++S+ +V L K+ +
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVE 311
Query: 275 TTGKYEIRVVNEAGEARTSGSVTITV------AEAETVMMDVRVESHP 316
G Y + E + SV + V +T+ SHP
Sbjct: 312 DGGVYTCYAMGETFNE--TLSVELKVYNFTLHGHHDTLNAAADPWSHP 357
Score = 39.1 bits (91), Expect = 0.003
Identities = 12/112 (10%), Positives = 24/112 (21%), Gaps = 36/112 (32%)
Query: 423 SPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 482
T++ + + E++L + L + +D VY
Sbjct: 262 DTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG---DLFFKKVQVEDGGVY-- 316
Query: 483 KASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLP 534
TC A + T + L +
Sbjct: 317 -------------------------------TCYAMGETFNETLSVELKVYN 337
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 67.5 bits (164), Expect = 1e-13
Identities = 20/106 (18%), Positives = 31/106 (29%), Gaps = 29/106 (27%)
Query: 22 QPALFTCKVEGHPLPTMTWQKDGTELH-----------------------------ATEH 52
+ G P PT+ WQK T+ +
Sbjct: 34 NKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGR 93
Query: 53 YLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
+ T + S + KED GVYT N G + + V++
Sbjct: 94 VRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 139
Score = 66.7 bits (162), Expect = 2e-13
Identities = 18/131 (13%), Positives = 41/131 (31%), Gaps = 11/131 (8%)
Query: 406 EAPKF-----TKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP 460
E PK + ++ A + L ++G P P++ W + + P
Sbjct: 12 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAP 71
Query: 461 TTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENV 520
++ + + ++ T +RS+ + ++ G T +N
Sbjct: 72 EDT------GDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNP 125
Query: 521 AGSVTCTATLS 531
G T+
Sbjct: 126 VGEDQVNLTVK 136
Score = 63.6 bits (154), Expect = 3e-12
Identities = 22/113 (19%), Positives = 35/113 (30%), Gaps = 9/113 (7%)
Query: 297 TITVAEAETVMMDVRVESHPTASFQWF---------IHSEPVVVTGKPTPLVTWSHDGTP 347
TI V + +DV + P + W W D
Sbjct: 27 TIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKL 86
Query: 348 MKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400
+ E + + T + E+ G+Y+ T NPVGE T+ V +
Sbjct: 87 LCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 139
Score = 63.2 bits (153), Expect = 3e-12
Identities = 20/128 (15%), Positives = 41/128 (32%), Gaps = 33/128 (25%)
Query: 204 DKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD------- 256
+ P++ R ++V + + L+ +G P P V W K +
Sbjct: 12 EPPKI-HLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDA 70
Query: 257 -------------------------IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEAR 291
+ET + + ++ K+ G Y + V N GE +
Sbjct: 71 PEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQ 130
Query: 292 TSGSVTIT 299
+ +V +
Sbjct: 131 VNLTVKVI 138
Score = 56.7 bits (136), Expect = 7e-10
Identities = 19/124 (15%), Positives = 39/124 (31%), Gaps = 32/124 (25%)
Query: 104 EAPKF-----TKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE-------------- 144
E PK + ++ A + L ++G P P++ W +
Sbjct: 12 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAP 71
Query: 145 -------------EILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAEC 191
++L + + T + ++ A +DE VY+V N G +
Sbjct: 72 EDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQV 131
Query: 192 RANL 195
+
Sbjct: 132 NLTV 135
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 66.0 bits (161), Expect = 1e-13
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 7/92 (7%)
Query: 7 PRFIEKIQPVVSHQE-QPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
+ Q S + F C + P T+ W + + ++ L
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA-----MDFNGIL 64
Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
I N D G Y C +N+ + +A L V
Sbjct: 65 TIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
Score = 54.8 bits (132), Expect = 9e-10
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 330 VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
+ P + W+ + + D +G+ L I V P +AG Y CT N
Sbjct: 34 AKSKSPAYTLVWTRLHNGKLPSRAM----DFNGI--LTIRNVQPSDAGTYVCTGSNMFAM 87
Query: 390 AVAAATLAVE 399
ATL V+
Sbjct: 88 DQGTATLHVQ 97
Score = 50.2 bits (120), Expect = 5e-08
Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 9/95 (9%)
Query: 104 EAPKFT-KPLKPVIAEAQSPATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
+ T + + + T + P ++ W R LP M+FN
Sbjct: 8 KPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLP--SRAMDFNGI-- 63
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
L+I P D Y N F + A L
Sbjct: 64 ---LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95
Score = 49.8 bits (119), Expect = 7e-08
Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 5/92 (5%)
Query: 211 APTIVRPLQALLVPKDSTVTLE--AEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVI 268
V ++ V + VT A+ + +P + W + + + + L I
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFICTAK-SKSPAYTLVWTRLHNGKLPSRAMDFNGI--LTI 66
Query: 269 KQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
+ G Y N + + ++ + V
Sbjct: 67 RNVQPSDAGTYVCTGSNMFAMDQGTATLHVQV 98
Score = 44.8 bits (106), Expect = 3e-06
Identities = 21/128 (16%), Positives = 31/128 (24%), Gaps = 42/128 (32%)
Query: 406 EAPKFT-KPLKPVIAEAQSPATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
+ T + + + T + P ++ W R LP M+FN
Sbjct: 8 KPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLP--SRAMDFNGI-- 63
Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
L+I P D Y C N+
Sbjct: 64 ---LTIRNVQPSDAGTY---------------------------------VCTGSNMFAM 87
Query: 524 VTCTATLS 531
TATL
Sbjct: 88 DQGTATLH 95
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 72.1 bits (177), Expect = 2e-13
Identities = 25/83 (30%), Positives = 35/83 (42%)
Query: 14 QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKED 73
Q V + F C+ +G P P + W L + + TV TLE+ +D
Sbjct: 393 QQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQD 452
Query: 74 IGVYTCKATNIGGVATCSANLIV 96
G Y C A N GG + A+L V
Sbjct: 453 NGTYLCIAANAGGNDSMPAHLHV 475
Score = 59.3 bits (144), Expect = 2e-09
Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 20/108 (18%)
Query: 291 RTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKE 350
R + + V E TV R + P + W + +V+ K +T DGT
Sbjct: 388 RDRKAQQVFVDEGHTVQFVCRADGDPPPAILW-LSPRKHLVSAKSNGRLTVFPDGT---- 442
Query: 351 GKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398
L + ++ G Y C A N G A L V
Sbjct: 443 ---------------LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 52.8 bits (127), Expect = 2e-07
Identities = 21/94 (22%), Positives = 30/94 (31%), Gaps = 5/94 (5%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK---L 266
A R Q + V + TV G P P + W K +VS + V L
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTL 443
Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
++ + G Y N G S + V
Sbjct: 444 EVRYAQVQDNGTYLCIAANAGGND--SMPAHLHV 475
Score = 43.2 bits (102), Expect = 2e-04
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 447 EILPDNGHTMEFN-PTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKI 505
++ D GHT++F G+ +I +P+ V + S+ + DG L +
Sbjct: 394 QVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSA--KSNGRLTVFPDG---TLEVRYA 448
Query: 506 TRDQIGDVTCRAENVAGSVTCTATL 530
G C A N G+ + A L
Sbjct: 449 QVQDNGTYLCIAANAGGNDSMPAHL 473
Score = 40.9 bits (96), Expect = 0.001
Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 109 TKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILP--DNGHTMEFNPTTGECVLS 166
K + + E + G P P+I W ++ ++ NG F T L
Sbjct: 390 RKAQQVFVDEGHT-VQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT----LE 444
Query: 167 ISEATPQDEAVYSVKAVNTFGRAECRANLV 196
+ A QD Y A N G A+L
Sbjct: 445 VRYAQVQDNGTYLCIAANAGGNDSMPAHLH 474
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 67.2 bits (164), Expect = 3e-13
Identities = 25/187 (13%), Positives = 52/187 (27%), Gaps = 33/187 (17%)
Query: 6 APRFIEKIQPVVS--HQEQPALFTCKVEGHPLPTMT-WQKDGTELHATEHYLITTVESVS 62
P+ + ++P ++ C+ P T W + + + S
Sbjct: 5 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS----------SQAS 54
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
+ I T D G Y C+ + L V + + V E
Sbjct: 55 SYFIDAATVNDSGEYRCQTNL--STLSDPVQLEVH------IGWLLLQAPRWVFKEEDP- 105
Query: 123 ATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
L+ + + + + NG ++ + I +AT +D Y +
Sbjct: 106 IHLRCHSWKNTALHKVTYLQ--------NGKDRKYFHHNSD--FHIPKATLKDSGSYFCR 155
Query: 182 AVNTFGR 188
+
Sbjct: 156 GLVGSKN 162
Score = 63.7 bits (155), Expect = 5e-12
Identities = 29/185 (15%), Positives = 56/185 (30%), Gaps = 36/185 (19%)
Query: 223 VPKDSTVTLEAEYTGTPTPE-VKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEI 281
V + +VTL+ + +P +WF N I S+ + I T +G+Y
Sbjct: 19 VLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA-------SSYFIDAATVNDSGEYRC 71
Query: 282 RVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVT-----GKPT 336
+ S V + V + A F +P+ +
Sbjct: 72 QTNLSTL----SDPVQLEVHIGWLL---------LQAPRWVFKEEDPIHLRCHSWKNTAL 118
Query: 337 PLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAV-AAAT 395
VT+ +G K Y + I + +++G Y C +
Sbjct: 119 HKVTYLQNGKDRK-------YFHHNS--DFHIPKATLKDSGSYFCRGLVGSKNVSSETVN 169
Query: 396 LAVEE 400
+ + +
Sbjct: 170 ITITQ 174
Score = 51.4 bits (123), Expect = 8e-08
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 10/98 (10%)
Query: 3 EVLAPRFIEKIQPVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLITTVESV 61
EV + + V +E P C + L +T+ ++G +
Sbjct: 85 EVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRK--------YFHHN 136
Query: 62 STLEIINPTKEDIGVYTCKATN-IGGVATCSANLIVLE 98
S I T +D G Y C+ V++ + N+ + +
Sbjct: 137 SDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ 174
Score = 43.7 bits (103), Expect = 3e-05
Identities = 22/197 (11%), Positives = 42/197 (21%), Gaps = 65/197 (32%)
Query: 331 VTGKPTPL-VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
P W H+ + + I ++G Y C
Sbjct: 31 GAYSPEDNSTQWFHNESLISSQAS-----------SYFIDAATVNDSGEYRCQTNLSTLS 79
Query: 390 AVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLK-ATVTGRPTPSICWYRGKEEI 448
L V + + V E L+ + + + +
Sbjct: 80 D--PVQLEVHI------GWLLLQAPRWVFKEEDP-IHLRCHSWKNTALHKVTYLQ----- 125
Query: 449 LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRD 508
NG ++ + I +AT +D Y
Sbjct: 126 ---NGKDRKYFHHNSD--FHIPKATLKDSGSY---------------------------- 152
Query: 509 QIGDVTCRAENVAGSVT 525
CR + +V+
Sbjct: 153 -----FCRGLVGSKNVS 164
Score = 30.2 bits (68), Expect = 1.3
Identities = 9/71 (12%), Positives = 17/71 (23%), Gaps = 12/71 (16%)
Query: 495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETA 554
S I T + G+ C+ S L +V ++ P
Sbjct: 51 SQASSYFIDAATVNDSGEYRCQTNLSTLS--DPVQL---------EVHIGWLLLQAPRWV 99
Query: 555 KVMDGQSVLFT 565
+ +
Sbjct: 100 -FKEEDPIHLR 109
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 67.5 bits (164), Expect = 5e-13
Identities = 25/221 (11%), Positives = 53/221 (23%), Gaps = 22/221 (9%)
Query: 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVST 63
+ + + + ++ + + C ++ E + +S
Sbjct: 7 IASVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKG 65
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPA 123
I + G+ C+A ++V P +
Sbjct: 66 FTIPSYMISYAGMVFCEAKINDESYQSIMYIVV--VVGYRIYDVVLSPSHGIELSVGEKL 123
Query: 124 TLKATVTGRPTPSIC--WYRGKEEILPDNGHTMEFNPTTG------ECVLSISEATPQDE 175
L T I W + + +G L+I T D+
Sbjct: 124 VLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQ 183
Query: 176 AVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVR 216
+Y+ A + + + RV E P R
Sbjct: 184 GLYTCAASSGLMTKKNSTFV-----------RVHEDPIEGR 213
Score = 66.0 bits (160), Expect = 2e-12
Identities = 25/208 (12%), Positives = 61/208 (29%), Gaps = 21/208 (10%)
Query: 209 LEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKW---FKNGKEIVSKDIETKDNVTK 265
+ + + + + K+ TV + + V + + + + + D+
Sbjct: 7 IASVSDQHGVVYITENKNKTVVIPCLGS-ISNLNVSLCARYPEKRFVPDGNRISWDSKKG 65
Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIH 325
I G ++ + + V V P+ + +
Sbjct: 66 FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIY-----DVVLSPSHGIELSVG 120
Query: 326 SEPVV---VTGKPTPLV--TWSHDGTPMKEGKEV-------TIYQDTDGLCKLAISEVFP 373
+ V+ + + W + + + K V + + L L I V
Sbjct: 121 EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTR 180
Query: 374 ENAGLYSCTAVNPVGEAVAAATLAVEEK 401
+ GLY+C A + + + + V E
Sbjct: 181 SDQGLYTCAASSGLMTKKNSTFVRVHED 208
Score = 59.8 bits (144), Expect = 2e-10
Identities = 21/210 (10%), Positives = 52/210 (24%), Gaps = 23/210 (10%)
Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
+ + + + + R E+ +G+ + ++ G
Sbjct: 8 ASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKG-- 65
Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLV 223
+I + +A + +V+ I ++ P + +
Sbjct: 66 -FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRI-------YDVVLSPSHGIEL 117
Query: 224 PKDSTVTLEAEYTGTPTPEV--KWFKNGKEIVSKDIETKDNVTK-----------LVIKQ 270
+ L + W + K + +D T+ L I
Sbjct: 118 SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDG 177
Query: 271 TTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
T+ G Y + + S V +
Sbjct: 178 VTRSDQGLYTCAASSGLMTKKNSTFVRVHE 207
Score = 52.1 bits (124), Expect = 7e-08
Identities = 24/200 (12%), Positives = 47/200 (23%), Gaps = 34/200 (17%)
Query: 335 PTPLVTWSH---DGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAV 391
V+ + + +G ++ + G I AG+ C A
Sbjct: 36 SNLNVSLCARYPEKRFVPDGNRIS-WDSKKGF---TIPSYMISYAGMVFCEAKINDESYQ 91
Query: 392 AAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPD 451
+ + V P + L T I +
Sbjct: 92 SIMYIVVVVGYRI--YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDF---------- 139
Query: 452 NGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIG 511
E+ ++ + T++ S L I +TR G
Sbjct: 140 ---NWEYP------------SSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQG 184
Query: 512 DVTCRAENVAGSVTCTATLS 531
TC A + + + +
Sbjct: 185 LYTCAASSGLMTKKNSTFVR 204
Score = 39.4 bits (91), Expect = 0.001
Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 5/114 (4%)
Query: 455 TMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVT 514
+ C+ SIS A Y K + ++ ++ I G V
Sbjct: 21 ENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVF 80
Query: 515 CRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
C A+ S + ++ + DV+ SP ++ G+ ++
Sbjct: 81 CEAKINDESYQSIMYIVVVVGYRIYDVVLSP-----SHGIELSVGEKLVLNCTA 129
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 66.5 bits (162), Expect = 5e-13
Identities = 29/186 (15%), Positives = 55/186 (29%), Gaps = 31/186 (16%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLP-TMTWQKDGTELHATEHYLITTVESVSTLE 65
P+ + + TC + W +G+ E+ S+L
Sbjct: 5 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE----------ETNSSLN 54
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATL 125
I+N ED G Y C+ S + + + + V+ E Q L
Sbjct: 55 IVNAKFEDSGEYKCQHQQ----VNESEPVYLEVFSD----WLLLQASAEVVMEGQP-LFL 105
Query: 126 K-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
+ + +Y+ +G +++ +SI+ AT +D Y
Sbjct: 106 RCHGWRNWDVYKVIYYK--------DGEALKYWYENHN--ISITNATVEDSGTYYCTGKV 155
Query: 185 TFGRAE 190
E
Sbjct: 156 WQLDYE 161
Score = 62.2 bits (151), Expect = 1e-11
Identities = 33/200 (16%), Positives = 62/200 (31%), Gaps = 36/200 (18%)
Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPE-VKWFKNGKEIVSKDIETKDNVTKL 266
V + P + + K VTL KWF NG + + L
Sbjct: 1 VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN-------SSL 53
Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHS 326
I + +G+Y+ + S V + V ++ AS + +
Sbjct: 54 NIVNAKFEDSGEYKCQHQQVNE----SEPVYLEVFSDWLLL---------QASAEVVMEG 100
Query: 327 EPVVVT-----GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSC 381
+P+ + V + DG +K Y + ++I+ E++G Y C
Sbjct: 101 QPLFLRCHGWRNWDVYKVIYYKDGEALK-------YWYENH--NISITNATVEDSGTYYC 151
Query: 382 TAVNPVGEAV-AAATLAVEE 400
T + + V +
Sbjct: 152 TGKVWQLDYESEPLNITVIK 171
Score = 49.1 bits (117), Expect = 5e-07
Identities = 29/218 (13%), Positives = 54/218 (24%), Gaps = 73/218 (33%)
Query: 331 VTGKPTPL-VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
W H+G+ +E L I E++G Y C
Sbjct: 28 GNNFFEVSSTKWFHNGSLSEETNS-----------SLNIVNAKFEDSGEYKCQHQQ--VN 74
Query: 390 AVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLK-ATVTGRPTPSICWYRGKEEI 448
L V + V+ E Q L+ + +Y+
Sbjct: 75 ESEPVYLEVFSD------WLLLQASAEVVMEGQP-LFLRCHGWRNWDVYKVIYYK----- 122
Query: 449 LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRD 508
+G +++ +SI+ AT +D Y
Sbjct: 123 ---DGEALKYWYENHN--ISITNATVEDSGTY---------------------------- 149
Query: 509 QIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPR 546
C + + L++ V+++PR
Sbjct: 150 -----YCTGKVWQLDYE-SEPLNI-------TVIKAPR 174
Score = 32.6 bits (74), Expect = 0.20
Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 12/68 (17%)
Query: 498 SVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVM 557
S L I + G+ C+ + V S V + S + VM
Sbjct: 51 SSLNIVNAKFEDSGEYKCQHQQVNESEP------------VYLEVFSDWLLLQASAEVVM 98
Query: 558 DGQSVLFT 565
+GQ +
Sbjct: 99 EGQPLFLR 106
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 70.2 bits (171), Expect = 9e-13
Identities = 43/285 (15%), Positives = 68/285 (23%), Gaps = 32/285 (11%)
Query: 27 TCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN-IG 85
KV PL W G + L I V T+
Sbjct: 97 YVKVNNGPLGNPIWNISGDPTRTWNR---------AELAISTFWPNFYQVIFEVITSGHQ 147
Query: 86 GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEE 145
G + + P F + + V A AT + + GR + +
Sbjct: 148 GYLAIDE--VKVLGHPCTRTPHFLRI-QNVEVNAGQFATFQCSAIGRTVAGDRLWLQGID 204
Query: 146 I-LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTID 204
+ + ++ T +D Y G ++
Sbjct: 205 VRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELV------- 257
Query: 205 KPRVLEAPTIVRPLQALLVPKDS-TVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKD-N 262
V E P + P Q V + L A P V + + +
Sbjct: 258 ---VKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVD 314
Query: 263 VTKLVIKQTTKKTTGKYEIRVV----NEAGEARTSGSVTITVAEA 303
T I T YEI V+ E G ++ A
Sbjct: 315 STSYKIGHLDPDTE--YEISVLLTRPGEGGTGSPGPALRTRTKCA 357
Score = 54.8 bits (131), Expect = 5e-08
Identities = 52/311 (16%), Positives = 95/311 (30%), Gaps = 35/311 (11%)
Query: 9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTW---QKDGTELHATEHYLITTVESVSTLE 65
+IQ V + Q A F C G + D + E + ++ +++
Sbjct: 167 HFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFN 226
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATL 125
++N TK D G Y C GGV + +V++ E P P+ P + L
Sbjct: 227 VVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK-----EPP---VPIAPPQLASVGATYL 278
Query: 126 KATVTGRPT---PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182
+ I + + + + +T I P E SV
Sbjct: 279 WIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDST---SYKIGHLDPDTEYEISVLL 335
Query: 183 VNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPL----QALLV-----PKDSTVTLEA 233
LR T P + P + + + + + + T
Sbjct: 336 TRPGEGGTGSPGPALRTRTKCADP--MRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSY 393
Query: 234 EYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRV--VNEAGEAR 291
T +V + +E VS D E + + I + T +++ +N G
Sbjct: 394 NLTVHYCYQVGGQEQVREEVSWDTEN--SHPQHTITNLSPYTN--VSVKLILMNPEGRKE 449
Query: 292 TSGSVTITVAE 302
S + + E
Sbjct: 450 -SQELIVQTDE 459
Score = 51.3 bits (122), Expect = 7e-07
Identities = 28/189 (14%), Positives = 51/189 (26%), Gaps = 22/189 (11%)
Query: 228 TVTLEAEYTGTPTPEVKWFKNGKEI-----VSKDIETKD-NVTKLVIKQTTKKTTGKYEI 281
+ + + P W +G I T N +++ + T G I
Sbjct: 93 LLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAI 152
Query: 282 RVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTW 341
V G T + + +V V + A+FQ G+
Sbjct: 153 DEVKVLGHPCTRTPHFLR-------IQNVEVNAGQFATFQCS-------AIGRTVAGDRL 198
Query: 342 S--HDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVE 399
KE+ + + + +AG Y C G ++ V
Sbjct: 199 WLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 258
Query: 400 EKEESGEAP 408
++ AP
Sbjct: 259 KEPPVPIAP 267
Score = 45.2 bits (106), Expect = 5e-05
Identities = 27/208 (12%), Positives = 48/208 (23%), Gaps = 46/208 (22%)
Query: 329 VVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
V V P W+ G P + LAIS +P + +
Sbjct: 98 VKVNNGPLGNPIWNISGDPTRTWNRAE----------LAISTFWPNFYQVIFEVITSGHQ 147
Query: 389 EAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEI 448
+A + V + P F + + V A AT + + GR + ++
Sbjct: 148 GYLAIDEVKVLGHPCT-RTPHFLRI-QNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDV 205
Query: 449 -LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITR 507
+ ++ T +D Y
Sbjct: 206 RDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKY--------------------------- 238
Query: 508 DQIGDVTCRAENVAGSVTCTATLSLLPE 535
C G ++ E
Sbjct: 239 ------RCMIRTEGGVGISNYAELVVKE 260
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 66.9 bits (163), Expect = 1e-12
Identities = 34/241 (14%), Positives = 52/241 (21%), Gaps = 47/241 (19%)
Query: 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTM-----TWQKDGTELHATEHYLITT 57
V P+ V CK + W+ + + H
Sbjct: 3 TVTVPK-----DLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDL 57
Query: 58 VESVS------------------TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
S L+I + +D GVY C + GG + V
Sbjct: 58 KVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISY-GGADYKRITVKVNAP 116
Query: 100 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 159
V+ S L G P + W ++L T
Sbjct: 117 ------YNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKRE 170
Query: 160 TG-ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPL 218
V S ++ A LV + E P P
Sbjct: 171 EKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELV-----------IPELPLAHPPN 219
Query: 219 Q 219
+
Sbjct: 220 E 220
Score = 60.4 bits (146), Expect = 2e-10
Identities = 28/241 (11%), Positives = 61/241 (25%), Gaps = 46/241 (19%)
Query: 297 TITVAEAETVMMDVRVESHPTAS-----FQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEG 351
V + ++ + W + + ++ + + ++
Sbjct: 10 LYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLK--VQHSSYRQR 67
Query: 352 KEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFT 411
+ Q + G L I++V ++AG+Y C ++ G T+ V
Sbjct: 68 ARLLKDQLSLGNAALQITDVKLQDAGVYRC-MISYGGADYKRITVKVNAP------YNKI 120
Query: 412 KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISE 471
V+ S L G P + W ++L T
Sbjct: 121 NQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEK-------- 172
Query: 472 ATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
+++V ++ I C + TA L
Sbjct: 173 -------LFNVTSTLR-----------------INTTTNEIFYCTFRRLDPEENHTAELV 208
Query: 532 L 532
+
Sbjct: 209 I 209
Score = 52.7 bits (126), Expect = 6e-08
Identities = 36/219 (16%), Positives = 61/219 (27%), Gaps = 45/219 (20%)
Query: 111 PLKPVIAEAQSPATLKATVTGRPTPS-----ICWYRGKEEIL------PDNGHTME---- 155
P + E S T++ + W + I+ D
Sbjct: 7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQ 66
Query: 156 ------FNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVL 209
+ G L I++ QD VY ++ G R + +V
Sbjct: 67 RARLLKDQLSLGNAALQITDVKLQDAGVYRCM-ISYGGADYKRITV-----------KVN 114
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKD-------- 261
+ ++ P S L + G P EV W + +++S T +
Sbjct: 115 APYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLF 174
Query: 262 NVT-KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
NVT L I TT + E + + I
Sbjct: 175 NVTSTLRINTTTN---EIFYCTFRRLDPEENHTAELVIP 210
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 65.3 bits (159), Expect = 3e-12
Identities = 25/187 (13%), Positives = 52/187 (27%), Gaps = 33/187 (17%)
Query: 6 APRFIEKIQPVVS--HQEQPALFTCKVEGHPLPTMT-WQKDGTELHATEHYLITTVESVS 62
P+ + ++P ++ C+ P T W + + + S
Sbjct: 5 LPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLIS----------SQAS 54
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
+ I T +D G Y C+ + L V + + V E
Sbjct: 55 SYFIDAATVDDSGEYRCQTQL--STLSDPVQLEVH------IGWLLLQAPRWVFKEEDP- 105
Query: 123 ATLKATVTGRPTPS-ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
L+ + + + NG ++ + I +AT +D Y +
Sbjct: 106 IHLRCHSWKNTALHKVTYLQ--------NGKGRKYFHHNSD--FYIPKATLKDSGSYFCR 155
Query: 182 AVNTFGR 188
+
Sbjct: 156 GLVGSKN 162
Score = 62.2 bits (151), Expect = 3e-11
Identities = 31/210 (14%), Positives = 61/210 (29%), Gaps = 47/210 (22%)
Query: 223 VPKDSTVTLEAEYTGTPTPE-VKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEI 281
V + +VTL+ + +P + +WF N I S+ + I T +G+Y
Sbjct: 19 VLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA-------SSYFIDAATVDDSGEYRC 71
Query: 282 RVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVT-----GKPT 336
+ + S V + V + A F +P+ +
Sbjct: 72 QTQL----STLSDPVQLEVHIGWLL---------LQAPRWVFKEEDPIHLRCHSWKNTAL 118
Query: 337 PLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAV-AAAT 395
VT+ +G K Y + I + +++G Y C +
Sbjct: 119 HKVTYLQNGKGRK-------YFHHNS--DFYIPKATLKDSGSYFCRGLVGSKNVSSETVQ 169
Query: 396 LAVEEKEESGEAPKFTKPLKPVIAEAQSPA 425
+ + + I+ P
Sbjct: 170 ITITQ-----------GLAVSTISSFFPPG 188
Score = 49.5 bits (118), Expect = 5e-07
Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 21/123 (17%)
Query: 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLITTVESV 61
EV + + V +E P C L +T+ ++G
Sbjct: 85 EVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRK--------YFHHN 136
Query: 62 STLEIINPTKEDIGVYTCKATN-IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ 120
S I T +D G Y C+ V++ + + + + I+
Sbjct: 137 SDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQ-----------GLAVSTISSFF 185
Query: 121 SPA 123
P
Sbjct: 186 PPG 188
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 66.7 bits (163), Expect = 6e-12
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK-DGTELHATEHYLITTVESVSTLE 65
P +E + + A C+ L +++W +GT + + + V S TL
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLN 400
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
N T +D G+YTC +N G T SA L V
Sbjct: 401 FTNVTVQDTGMYTCMVSNSVGNTTASATLNVTG 433
Score = 52.8 bits (127), Expect = 2e-07
Identities = 23/107 (21%), Positives = 35/107 (32%), Gaps = 20/107 (18%)
Query: 292 TSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEG 351
+ V E + R + S W + V+ G + DGT
Sbjct: 345 VEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGT----- 398
Query: 352 KEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398
L + V ++ G+Y+C N VG A+ATL V
Sbjct: 399 --------------LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
Score = 49.4 bits (118), Expect = 2e-06
Identities = 26/95 (27%), Positives = 34/95 (35%), Gaps = 7/95 (7%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFK-NGKEIVSKDIETKDNVTK--- 265
AP IV P L V + L+ T V W NG + + + V
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCR-ASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGT 398
Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
L T + TG Y V N G T+ S T+ V
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGN--TTASATLNV 431
Score = 40.9 bits (96), Expect = 0.001
Identities = 25/129 (19%), Positives = 40/129 (31%), Gaps = 35/129 (27%)
Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
AP +P + A LK + S+ W I P+
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSW------ITPNG------------- 379
Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
V + A +++DG L + +T G TC N G+ T
Sbjct: 380 ------------TVMTHGAYKVRIAVLSDG---TLNFTNVTVQDTGMYTCMVSNSVGNTT 424
Query: 526 CTATLSLLP 534
+ATL++
Sbjct: 425 ASATLNVTG 433
Score = 39.7 bits (93), Expect = 0.002
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 10/96 (10%)
Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILP----DNGHTMEFNPT 159
AP +P + A LK + S+ W ++ + + T
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGT 398
Query: 160 TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANL 195
L+ + T QD +Y+ N+ G A L
Sbjct: 399 -----LNFTNVTVQDTGMYTCMVSNSVGNTTASATL 429
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.8 bits (165), Expect = 7e-12
Identities = 58/344 (16%), Positives = 108/344 (31%), Gaps = 114/344 (33%)
Query: 5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
L I+ +S + L KV L + W ++ + + YL++ +S
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD-YLLSI--PISC- 238
Query: 65 EIINPTKEDIGVY-------TCKAT---------NIGGVATCSANLIV---LEKEESGEA 105
P IGV T K + G S L+ + + +S E+
Sbjct: 239 ----PL---IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES 291
Query: 106 PKFTKPLKPVI-------AEAQ--------SPATLKATVT---GRPTP--SICWYRG--K 143
F ++ I P+ L+ ++ G P+P SI +
Sbjct: 292 --FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI---SNLTQ 346
Query: 144 EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVY-SVKAVNT---F---GRAE--CRAN 194
E++ + + N P + V S+ VN G + N
Sbjct: 347 EQVQD---YVNKTNSH-----------LPAGKQVEISL--VNGAKNLVVSGPPQSLYGLN 390
Query: 195 LVLRKA---TTIDKPRVL---EAPTIVR---PLQA-----LLVP---------KDSTVTL 231
L LRKA + +D+ R+ P+ + LLVP + V+
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 232 EAEYTGTPTPEVKWFKNGKEIVSKDI-ETKDNVTKLVIKQTTKK 274
A+ P V +G D+ ++++ ++ +
Sbjct: 451 NAKDIQIP---VYDTFDG-----SDLRVLSGSISERIVDCIIRL 486
Score = 48.1 bits (114), Expect = 7e-06
Identities = 87/544 (15%), Positives = 160/544 (29%), Gaps = 208/544 (38%)
Query: 109 TKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSIS 168
T+PL ++ +L+ + P+ ++ L + +FN E +
Sbjct: 6 TRPL--TLSHG----SLEHVL---LVPTASFFIA--SQLQE-----QFNKILPE----PT 45
Query: 169 EATPQDEAVYSVKAVNTFGRAECRANLVLR----KATTIDKPRVLEAPTIVRPLQALLVP 224
E D+ + AE LV + ++ ++ +V + + L L
Sbjct: 46 EGFAADDEPTTP--------AE----LVGKFLGYVSSLVEPSKVGQFDQV---LNLCLT- 89
Query: 225 KDSTVTLEAEYTGTPTPEVKWFKNGKEI------VSKDIETKDNVTKLVIKQTTKKTTGK 278
E Y G +I + ++ +T TK +IK
Sbjct: 90 -----EFENCYLE-----------GNDIHALAAKLLQENDTTLVKTKELIKNY------- 126
Query: 279 YEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASF--Q-----WF-----IHS 326
R++ + + S S + A F Q +F ++
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEG--------NAQLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 327 ------EPVVVTGKPT--PLVTWSHDGTPMKEGKEVTIYQ---------DTDGLCKLAIS 369
++ T L+ + D + + + I + D D L + IS
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKV-FTQGLNILEWLENPSNTPDKDYLLSIPIS 237
Query: 370 EVFPENAGL-----YSCTA----VNP------------VGEA-VAAATLAVEEKEESGEA 407
P G+ Y TA P + V A +A + ES
Sbjct: 238 --CPLI-GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES--- 291
Query: 408 PKFTKPLKPVI-------AEAQ--------SPATLKATVT---GRPTP--SICWYRG--K 445
F ++ I P+ L+ ++ G P+P SI +
Sbjct: 292 --FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI---SNLTQ 346
Query: 446 EEI----------LPDNGHTME---FN-PTTGECVLSISEATPQD-----EAVYSVKASS 486
E++ LP +E N V+S PQ + KA S
Sbjct: 347 EQVQDYVNKTNSHLPAGKQ-VEISLVNGAKN--LVVS---GPPQSLYGLNLTLRKAKAPS 400
Query: 487 T--ETKI-MTD-----GNR---------SVLL---ISKITRD-QIGDVTCRAENVAGSVT 525
+++I ++ NR S LL I +D +V+ A+++ V
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 526 CTAT 529
T
Sbjct: 461 DTFD 464
Score = 34.3 bits (78), Expect = 0.13
Identities = 36/209 (17%), Positives = 65/209 (31%), Gaps = 63/209 (30%)
Query: 35 LPTMTWQKDGTELHATEHYL---ITTVESVSTLEIINPTKEDIGVYTCKATNIG---G-- 86
+ T++ + L AT+ + +T + + E + K G+ AT G G
Sbjct: 1714 STSYTFRSEKGLLSATQ-FTQPALTLM-EKAAFEDL---KSK-GLIPADATFAGHSLGEY 1767
Query: 87 VA-TCSANLIVLEKEES-------GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSIC 138
A A+ V+ E G + P + +S + A GR S
Sbjct: 1768 AALASLAD--VMSIESLVEVVFYRGMTMQVAVPRDEL---GRSNYGMIAINPGRVAASFS 1822
Query: 139 WYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD-EAV-Y-----------SVKAVNT 185
+E L V + + T E V Y ++A++T
Sbjct: 1823 -----QEALQ-------------YVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDT 1864
Query: 186 FGRAECRANLVLRKATTIDKPRVLEAPTI 214
L K ID + ++ ++
Sbjct: 1865 VTNV-----LNFIKLQKIDIIELQKSLSL 1888
Score = 30.4 bits (68), Expect = 2.2
Identities = 31/200 (15%), Positives = 58/200 (29%), Gaps = 67/200 (33%)
Query: 251 EIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDV 310
+IV +N L I +K GK IR S + T+ + + +
Sbjct: 1663 DIV------INNPVNLTIHFGGEK--GKR-IR-------ENYSAMIFETIVDGKLKTEKI 1706
Query: 311 RVESHPTASFQWFIHSEPVVVTGKPT----P-LVTWSHDGTPMKEGKEVTIYQDTD---- 361
E + ++ F + ++ T P L ++ K +
Sbjct: 1707 FKEINEHSTSYTFRSEKGLL---SATQFTQPALTLMEK--AAFEDLKSKGLIPADATFAG 1761
Query: 362 ---G----LCKLAISEVFP-ENA-------GL---------------YSCTAVNP----V 387
G L ++++V E+ G+ Y A+NP
Sbjct: 1762 HSLGEYAALA--SLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAA 1819
Query: 388 GEAVAAATLAVEE-KEESGE 406
+ A VE + +G
Sbjct: 1820 SFSQEALQYVVERVGKRTGW 1839
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 65.9 bits (161), Expect = 1e-11
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD-GTELHATEHYLITTVESVSTL 64
AP ++ + + + + A C+ P+ ++ W GT L + +V + TL
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTL 409
Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
+ D GVYTC TN+ G + SA L V
Sbjct: 410 NFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441
Score = 55.1 bits (133), Expect = 3e-08
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 21/107 (19%)
Query: 292 TSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEG 351
+ ++E + R P +S +W + + V+ P ++ +DGT
Sbjct: 356 MDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGT----- 408
Query: 352 KEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398
L S V + G+Y+C N G + A+A L V
Sbjct: 409 --------------LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441
Score = 49.0 bits (117), Expect = 2e-06
Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 8/95 (8%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFK-NGKEIVSKDIETKDNVTK--- 265
AP I+ + L + + L+ P VKW NG + + +V
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCR--TPPMSSVKWLLPNGTVLSHASRHPRISVLNDGT 408
Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
L TG Y V N AG ++ S + V
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGN--SNASAYLNV 441
Score = 39.3 bits (92), Expect = 0.003
Identities = 21/109 (19%), Positives = 30/109 (27%), Gaps = 15/109 (13%)
Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG-- 161
AP + + A LK P S+ W NG +
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLL-------PNGTVLSHASRHPRI 401
Query: 162 ----ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKP 206
+ L+ S D VY+ N G + A L + A T
Sbjct: 402 SVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHHH 450
Score = 36.6 bits (85), Expect = 0.019
Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 11/85 (12%)
Query: 454 HTMEFNPTTGECVLSISEATPQ--------DEAVYSVKASSTETKIMTDGNRSVLLISKI 505
+ N + G P + V S + ++ DG L S +
Sbjct: 358 APRDLNISEGRMAELKCRTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGT---LNFSHV 414
Query: 506 TRDQIGDVTCRAENVAGSVTCTATL 530
G TC NVAG+ +A L
Sbjct: 415 LLSDTGVYTCMVTNVAGNSNASAYL 439
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 60.5 bits (146), Expect = 1e-11
Identities = 19/105 (18%), Positives = 31/105 (29%), Gaps = 11/105 (10%)
Query: 3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMT--WQKDGTELHATEHYLITTVES 60
+ P+ + + + FTC MT W D L E + +
Sbjct: 7 DFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRA 66
Query: 61 --------VSTLEIINPTKEDIGVYTCKATNIGGVATCS-ANLIV 96
+ L + N G Y C +N G + A L +
Sbjct: 67 QGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 45.8 bits (108), Expect = 2e-06
Identities = 13/106 (12%), Positives = 32/106 (30%), Gaps = 14/106 (13%)
Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEV--KWFKNGKEIVSKDIETKDNVTK 265
P I + S V+ + + W + + + ++E ++
Sbjct: 7 DFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRA 66
Query: 266 -----------LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
L ++ + G Y+ + N G + S +T+
Sbjct: 67 QGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSS-YSVXAXLTI 111
Score = 45.8 bits (108), Expect = 2e-06
Identities = 13/95 (13%), Positives = 22/95 (23%), Gaps = 8/95 (8%)
Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGEC 163
P+ T + A S + + + W E + G
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 164 V------LSISEATPQDEAVYSVKAVNTFGRAECR 192
+ L + E Y N FG +
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSV 105
Score = 43.9 bits (103), Expect = 1e-05
Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 15/105 (14%)
Query: 297 TITVAEAETVMMDVRVESHPTA--SFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEV 354
T + V S + +F W +E + + +G E+
Sbjct: 19 TQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEAL-------QDAEMENYAHLRAQGGEL 71
Query: 355 TIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAA-ATLAV 398
Y L + V + G Y C N G + + A L +
Sbjct: 72 MEYTTI-----LRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 40.8 bits (95), Expect = 1e-04
Identities = 15/127 (11%), Positives = 29/127 (22%), Gaps = 30/127 (23%)
Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGEC 465
P+ T + A S + + + W E + G
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
++ + ++L + + G C N GS
Sbjct: 71 LMEYT---------------------------TILRLRNVEFTSEGXYQCVISNHFGSSY 103
Query: 526 CT-ATLS 531
A L+
Sbjct: 104 SVXAXLT 110
Score = 29.3 bits (65), Expect = 1.3
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 538 VTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
V D P+ PET + G V FT
Sbjct: 4 VCDDFPXPQITVQPETQSAIXGSDVSFTCSA 34
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 58.1 bits (140), Expect = 1e-10
Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 12/118 (10%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS---- 62
+ + + Q C ++ W Y +
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 63 -----TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLE--KEESGEAPKFTKPLK 113
++ + N T +D GVY C + V+T +IVL K E P +PL+
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLHYS-DSVSTKEVKVIVLATMKGEFCRYPSHWRPLE 118
Score = 47.7 bits (113), Expect = 5e-07
Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 12/125 (9%)
Query: 292 TSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEG 351
T+ + TITV E +T+ + +S QW P+ + ++ +K
Sbjct: 5 TNHTETITVEEGQTLTLKCVTSLRKNSSLQWL----------TPSGFTIFLNEYPVLKNS 54
Query: 352 KEVTIYQDTDGLCKLAISEVFPENAGLYSCTAV-NPVGEAVAAATLAVEEKEESGEAPKF 410
K + + + + V ++ G+Y C + V + K E P
Sbjct: 55 K-YQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLATMKGEFCRYPSH 113
Query: 411 TKPLK 415
+PL+
Sbjct: 114 WRPLE 118
Score = 46.1 bits (109), Expect = 2e-06
Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 13/122 (10%)
Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP------- 158
T + + E TLK + R S+ W + N + + N
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 159 TTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANL-VLRKATTIDKPRVLEAPTIVRP 217
+ + +++ T QDE VY + + + VL K P+ RP
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCL-HYSDSVSTKEVKVIVLATM----KGEFCRYPSHWRP 116
Query: 218 LQ 219
L+
Sbjct: 117 LE 118
Score = 42.3 bits (99), Expect = 4e-05
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 7/90 (7%)
Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP------- 460
T + + E TLK + R S+ W + N + + N
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 461 TTGECVLSISEATPQDEAVYSVKASSTETK 490
+ + +++ T QDE VY S
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLHYSDSVS 91
Score = 31.1 bits (70), Expect = 0.34
Identities = 11/101 (10%), Positives = 34/101 (33%), Gaps = 15/101 (14%)
Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD------------IET 259
++ + + V + T+TL+ + ++W + + +
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 260 KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
N + + T + G Y+ +++ ++ V + V
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLHYSDSV---STKEVKVIV 99
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 57.9 bits (139), Expect = 1e-10
Identities = 24/111 (21%), Positives = 34/111 (30%), Gaps = 12/111 (10%)
Query: 2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPL---PTMTW---------QKDGTELHA 49
AE F++K V + A+ KV G L PT+ W K G
Sbjct: 8 AEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSF 67
Query: 50 TEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKE 100
E + + L I D G Y + +C N+ V
Sbjct: 68 KESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118
Score = 41.7 bits (97), Expect = 6e-05
Identities = 15/106 (14%), Positives = 32/106 (30%), Gaps = 15/106 (14%)
Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTP---TPEVKWFK---------NGKEI---VSKD 256
++ ++ V + A+ G P +KWFK +G S +
Sbjct: 13 GVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHN 72
Query: 257 IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
+ +L I + G Y + V + ++ +
Sbjct: 73 SASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118
Score = 40.2 bits (93), Expect = 2e-04
Identities = 16/103 (15%), Positives = 29/103 (28%), Gaps = 14/103 (13%)
Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPM----KEGKEVTIYQDTDGLC 364
V VE+ A ++ + + P + W G + K G + + +
Sbjct: 21 SVSVETGKDAVVVAKVNGKELP----DKPTIKW-FKGKWLELGSKSGARFSFKESHNSAS 75
Query: 365 K-----LAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKE 402
L I +V + G Y + VE
Sbjct: 76 NVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118
Score = 29.0 bits (64), Expect = 1.6
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 544 SPRFIKTPETAKVMDGQSVLFTAQVGYSERLEIPLI 579
+ F+K P++ V G+ + A+V E + P I
Sbjct: 12 TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTI 47
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 61.0 bits (147), Expect = 2e-10
Identities = 40/288 (13%), Positives = 72/288 (25%), Gaps = 31/288 (10%)
Query: 22 QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81
L TC + E + L+ + E+ N + C +
Sbjct: 15 GSVLVTCSTSCDQPKLLGI-----ETPLPKKELLLPGNNRKVYELSNVQ--EDSQPMCYS 67
Query: 82 TNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG---RPTPSIC 138
G +T L V E P TL+ V G R ++
Sbjct: 68 NCPDGQSTAKTFLTVYWTPER-----VELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVV 122
Query: 139 WYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF---GRAECRANL 195
RG++E+ + T ++ A +S + G
Sbjct: 123 LLRGEKELKREPAVGEPAEVT-----TTVLVRRDHHGANFSCRTELDLRPQGLELFENTS 177
Query: 196 VLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP---EVKWFKNGKEI 252
+ T P R L+ D+ T+ G +V + +
Sbjct: 178 APYQLQTFVLPATPPQLVSPRVLEV-----DTQGTVVCSLDGLFPVSEAQVHLALGDQRL 232
Query: 253 VSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
D+ + T + G + G T+T+
Sbjct: 233 NPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI 280
Score = 29.4 bits (65), Expect = 2.8
Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 8/91 (8%)
Query: 374 ENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG 433
+ C + P G++ A L V E P TL+ V G
Sbjct: 58 QEDSQPMCYSNCPDGQSTAKTFLTVYWTPER-----VELAPLPSWQPVGKNLTLRCQVEG 112
Query: 434 ---RPTPSICWYRGKEEILPDNGHTMEFNPT 461
R ++ RG++E+ + T
Sbjct: 113 GAPRANLTVVLLRGEKELKREPAVGEPAEVT 143
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 57.4 bits (138), Expect = 2e-10
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 10/88 (11%)
Query: 22 QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLIT----------TVESVSTLEIINPTK 71
+ + C + + + L+ + +STL I T+
Sbjct: 24 EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTR 83
Query: 72 EDIGVYTCKATNIGGVATCSANLIVLEK 99
D G+YTC A++ S + V EK
Sbjct: 84 SDQGLYTCAASSGLMTKKNSTFVRVHEK 111
Score = 49.0 bits (116), Expect = 2e-07
Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 9/81 (11%)
Query: 330 VVTGKPTPLV--TWSHDGTPMKEGKEVTIYQDT-------DGLCKLAISEVFPENAGLYS 380
+ + W + + + K V T L L I V + GLY+
Sbjct: 31 TARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYT 90
Query: 381 CTAVNPVGEAVAAATLAVEEK 401
C A + + + + V EK
Sbjct: 91 CAASSGLMTKKNSTFVRVHEK 111
Score = 42.4 bits (99), Expect = 4e-05
Identities = 14/113 (12%), Positives = 26/113 (23%), Gaps = 19/113 (16%)
Query: 110 KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTME--------FNPTTG 161
P + L T I + + +
Sbjct: 13 SPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF 72
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTI 214
L+I T D+ +Y+ A + + + RV E P +
Sbjct: 73 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFV-----------RVHEKPFV 114
Score = 42.4 bits (99), Expect = 4e-05
Identities = 17/113 (15%), Positives = 31/113 (27%), Gaps = 15/113 (13%)
Query: 215 VRPLQALLVPKDSTVTLEAEYTGTPTPEV--KWFKNGKEIVSKDIETKDNVTK------- 265
+ P + + + L + W + K + +D T+
Sbjct: 12 LSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 71
Query: 266 ----LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVES 314
L I T+ G Y + + S + V E V +ES
Sbjct: 72 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKN--STFVRVHEKPFVAFGSGMES 122
Score = 39.7 bits (92), Expect = 4e-04
Identities = 14/120 (11%), Positives = 26/120 (21%), Gaps = 25/120 (20%)
Query: 412 KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISE 471
P + L T I +
Sbjct: 13 SPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYP------------------------- 47
Query: 472 ATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
++ + T++ S L I +TR G TC A + + + +
Sbjct: 48 SSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 107
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 56.9 bits (137), Expect = 1e-09
Identities = 39/192 (20%), Positives = 57/192 (29%), Gaps = 37/192 (19%)
Query: 14 QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS----------T 63
Q + F PL + W+K ++ E+ S +
Sbjct: 3 QQIYGVVYGNVTFHVP-SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS 61
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPA 123
L I N T D Y ++ NI T L VLE KP+I S A
Sbjct: 62 LTIYNLTSSDEDEYEMESPNITD--TMKFFLYVLEM-----------VSKPMIYWECSNA 108
Query: 124 TLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAV 183
TL V + Y+GKE + ++S A + KAV
Sbjct: 109 TLTCEVLEGTDVELKLYQGKEHLRSLR-------------QKTMSYQWTNLRAPFKCKAV 155
Query: 184 NTFGRAECRANL 195
N + +
Sbjct: 156 NRVSQESEMEVV 167
Score = 53.0 bits (127), Expect = 2e-08
Identities = 26/187 (13%), Positives = 47/187 (25%), Gaps = 39/187 (20%)
Query: 227 STVTLEAEYTGTPTPEVKWFKNGKEIVSKD-------------IETKDNVTKLVIKQTTK 273
VT P EV W K ++ + + L I T
Sbjct: 11 GNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTS 69
Query: 274 KTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTG 333
+YE+ N + V E + S P ++ + V
Sbjct: 70 SDEDEYEMESPNITDTM----KFFLYVLE---------MVSKPMIYWECSNATLTCEVLE 116
Query: 334 KPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAA 393
+ ++ ++ T+ S + + C AVN V +
Sbjct: 117 GTDVELKLYQGKEHLRSLRQKTM------------SYQWTNLRAPFKCKAVNRVSQESEM 164
Query: 394 ATLAVEE 400
+ E
Sbjct: 165 EVVNCPE 171
Score = 46.8 bits (111), Expect = 3e-06
Identities = 27/156 (17%), Positives = 44/156 (28%), Gaps = 28/156 (17%)
Query: 333 GKPTPLVTWSHDGTPM---KEGKEVTIYQDTDGL------CKLAISEVFPENAGLYSCTA 383
P V W + + + + + L I + + Y +
Sbjct: 20 NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMES 79
Query: 384 VNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYR 443
N L V E KP+I S ATL V + Y+
Sbjct: 80 PNITDTMKF--FLYVLEM-----------VSKPMIYWECSNATLTCEVLEGTDVELKLYQ 126
Query: 444 GKEEILPDNGHTMEFNPTTG----ECVLS--ISEAT 473
GKE + TM + T +C +S+ +
Sbjct: 127 GKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQES 162
Score = 35.3 bits (81), Expect = 0.025
Identities = 16/167 (9%), Positives = 38/167 (22%), Gaps = 51/167 (30%)
Query: 415 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEIL-PDNGHTMEFNPTTGE-------CV 466
+ + T P + W + K+++ +N F+
Sbjct: 3 QQIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS 61
Query: 467 LSISEATPQDEAVYSVKASSTETKI----------------------------------- 491
L+I T DE Y +++ + +
Sbjct: 62 LTIYNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYWECSNATLTCEVLEGTDVE 121
Query: 492 -------MTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
+ +S + C+A N + ++
Sbjct: 122 LKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN 168
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 56.5 bits (136), Expect = 2e-09
Identities = 28/182 (15%), Positives = 50/182 (27%), Gaps = 33/182 (18%)
Query: 228 TVTLEAEYT-GTPTPEVKWFKNGKEIV--------SKDIETKDNVTK----------LVI 268
+VTL E+ G + W N + S +I + L +
Sbjct: 15 SVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQL 74
Query: 269 KQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEP 328
+ TG Y ++ + +S ++ I + V S + +H
Sbjct: 75 SNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRN---IQVTNHSQLFQNMTCELHLTC 131
Query: 329 VVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
V W G + +T+ D + Y+C A N V
Sbjct: 132 SVEDADDNVSFRWEALGNTLSSQPNLTVSWDPR-----------ISSEQDYTCIAENAVS 180
Query: 389 EA 390
Sbjct: 181 NL 182
Score = 48.1 bits (114), Expect = 1e-06
Identities = 28/192 (14%), Positives = 51/192 (26%), Gaps = 35/192 (18%)
Query: 22 QPALFTCKV-EGHPLPTMTWQKDGTEL---------------HATEHYLITTVESVSTLE 65
+ + G + +TW + T L + +L+
Sbjct: 14 ESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQ 73
Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATL 125
+ N ED G Y + + S L +L + + + T + L
Sbjct: 74 LSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRN---IQVTNHS-QLFQNMTCELHL 129
Query: 126 KATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATP-QDEAVYSVKAV 183
+V S W G+T+ P L++S E Y+ A
Sbjct: 130 TCSVEDADDNVSFRWEA--------LGNTLSSQPN-----LTVSWDPRISSEQDYTCIAE 176
Query: 184 NTFGRAECRANL 195
N +
Sbjct: 177 NAVSNLSFSVSA 188
Score = 40.7 bits (95), Expect = 4e-04
Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 10/97 (10%)
Query: 1 MAEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES 60
+ ++ + Q + + L + + W+ G L + + +
Sbjct: 105 LRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTV----- 159
Query: 61 VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVL 97
+P YTC A N + S + L
Sbjct: 160 -----SWDPRISSEQDYTCIAENAVSNLSFSVSAQKL 191
Score = 37.7 bits (87), Expect = 0.004
Identities = 34/244 (13%), Positives = 66/244 (27%), Gaps = 56/244 (22%)
Query: 292 TSGSVTITVAEAETVMMDVRV-ESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKE 350
+ + + E+V + + W +E + P + T K+
Sbjct: 2 SLTPLMVNGILGESVTLPLEFPAGEKVNFITWL-FNETSLAFIVPHETKSPEIHVTNPKQ 60
Query: 351 GKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKF 410
GK + Q L +S + E+ G Y +++ TL + + + +
Sbjct: 61 GKRLNFTQSYS----LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRN---IQV 113
Query: 411 TKPLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSI 469
T + L +V S W G+T+ P L++
Sbjct: 114 TNHS-QLFQNMTCELHLTCSVEDADDNVSFRWEA--------LGNTLSSQPN-----LTV 159
Query: 470 SEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTAT 529
S D TC AEN +++ + +
Sbjct: 160 SWDPRISSE--------------------------------QDYTCIAENAVSNLSFSVS 187
Query: 530 LSLL 533
L
Sbjct: 188 AQKL 191
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 55.5 bits (133), Expect = 8e-09
Identities = 33/222 (14%), Positives = 58/222 (26%), Gaps = 38/222 (17%)
Query: 113 KPVIAEAQSPATLKATVTGRPTP-----SICWYRGK----------------EEILPDNG 151
V TL + + W R E
Sbjct: 7 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEF 66
Query: 152 HTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEA 211
+ L + +DE Y+ TF + ++ L RVL
Sbjct: 67 VAARLGAELRDASLRMFGLRVEDEGSYTCL-FVTFPQGSRSVDIWL---------RVLAK 116
Query: 212 PTIVRPLQALLVPKDSTVTLEAE-YTGTPTPEVKWFKNGKEIVSKDIETKD-----NVTK 265
P +Q + + + G P ++ W + + VT
Sbjct: 117 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTS 176
Query: 266 LVIKQTTKKTTGK-YEIRVVNEAGEARTSGSVTITVAEAETV 306
L I + + GK +V +E+ E +V++TV
Sbjct: 177 LWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLTVYYPHHH 218
Score = 46.6 bits (110), Expect = 6e-06
Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 7/100 (7%)
Query: 3 EVLA-PRFIEKIQPVVSHQEQPALFTCKVEG-HPLPTMTWQKDGTELHATEHYLIT---T 57
VLA P+ ++Q V E + C G P +TW D + T T
Sbjct: 112 RVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGT 171
Query: 58 VESVSTLEIINPTKEDIG-VYTCKATNIGGVATCSANLIV 96
V S I+ P+ + G TCK + + +
Sbjct: 172 VTVTSLW-ILVPSSQVDGKQVTCKVEHESFEKPQLLTVSL 210
Score = 44.3 bits (104), Expect = 4e-05
Identities = 32/202 (15%), Positives = 59/202 (29%), Gaps = 32/202 (15%)
Query: 22 QPALFTCKVEGHPLPTM-----TWQKDG-----------TELHATEHYLITTVESVS--- 62
C ++ + TW + G +E + V +
Sbjct: 15 DSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAE 74
Query: 63 ----TLEIINPTKEDIGVYTCK-ATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIA 117
+L + ED G YTC T G + L VL K P+ T ++ V
Sbjct: 75 LRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAK------PQNTAEVQKVQL 128
Query: 118 EAQSPATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT-TGECVLSISEATPQDE 175
+ + + GRP I W+ + + + T T + + ++ D
Sbjct: 129 TGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDG 188
Query: 176 AVYSVKAVNTFGRAECRANLVL 197
+ K + + L
Sbjct: 189 KQVTCKVEHESFEKPQLLTVSL 210
Score = 41.2 bits (96), Expect = 4e-04
Identities = 34/248 (13%), Positives = 66/248 (26%), Gaps = 57/248 (22%)
Query: 297 TITVAEAETVMMDVRVESHPTA-----SFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEG 351
+ ++V + ++ W H G+ + + P
Sbjct: 8 QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARH-------GESGSMAVFHQTQGPSYSE 60
Query: 352 K-----EVTIYQDTDGLCKLAISEVFPENAGLYSCTAV-NPVGEAVAAATLAVEEKEESG 405
L + + E+ G Y+C V P G L V K
Sbjct: 61 SKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAK---- 116
Query: 406 EAPKFTKPLKPVIAEAQSPATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 464
P+ T ++ V + + + GRP I W+
Sbjct: 117 --PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSD------------------LG 156
Query: 465 CVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV 524
+ S+ +V S+ ++ ++ VTC+ E+ +
Sbjct: 157 GMPQTSQVPGFLSGTVTV--------------TSLWILVPSSQVDGKQVTCKVEHESFEK 202
Query: 525 TCTATLSL 532
T+SL
Sbjct: 203 PQLLTVSL 210
Score = 34.7 bits (79), Expect = 0.050
Identities = 28/218 (12%), Positives = 59/218 (27%), Gaps = 38/218 (17%)
Query: 214 IVRPLQALLVPKDSTVTLEAEYTGTPTP-----EVKWFKNGK------------------ 250
+V+ + +VTL ++ W ++G+
Sbjct: 2 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 61
Query: 251 ---EIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVM 307
E V+ + + L + + G Y V +R S + + V
Sbjct: 62 KRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSR-SVDIWLRVLAKPQNT 120
Query: 308 MDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLC--- 364
+V + + + V G+P +TW D M + +V G
Sbjct: 121 AEV---QKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVP--GFLSGTVTVT 175
Query: 365 -KLAISEVFPENAGLYSCTAVNP--VGEAVAAATLAVE 399
+ + +C + + +L V
Sbjct: 176 SLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLTVY 213
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 54.1 bits (130), Expect = 1e-08
Identities = 29/166 (17%), Positives = 50/166 (30%), Gaps = 27/166 (16%)
Query: 32 GHPLPTMTWQKDGTELHATEHYL--ITTVESVSTLEIINPTKEDIGVYTCKATNIGGVAT 89
+ + +G + + + ++ L I N +KED G Y + +
Sbjct: 37 TTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETED-Q 95
Query: 90 CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPD 149
+ V E KP+I S ATL V + Y+GKE +
Sbjct: 96 WKITMEVYEM-----------VSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSL 144
Query: 150 NGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANL 195
++S A + KAVN + +
Sbjct: 145 RQ-------------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVV 177
Score = 48.0 bits (114), Expect = 1e-06
Identities = 30/246 (12%), Positives = 55/246 (22%), Gaps = 74/246 (30%)
Query: 291 RTSGSVTITVAEAETVMMDVRV-ESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMK 349
+ + V + + W ++ + +G
Sbjct: 2 QDQSVPNVNAITGSNVTLTILKHPLASYQRLTWL--------HTTNQKILEYFPNGKKTV 53
Query: 350 EGKE----VTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESG 405
V + + L I V E+ G Y ++ E T+ V E
Sbjct: 54 FESVFKDRVDLDKTN---GALRIYNVSKEDRGDYYMRMLHE-TEDQWKITMEVYEM---- 105
Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
KP+I S ATL V + Y+GKE +
Sbjct: 106 -------VSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHL----------------- 141
Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
+ +S + C+A N +
Sbjct: 142 -----------------------------RSLRQKTMSYQWTNLRAPFKCKAVNRVSQES 172
Query: 526 CTATLS 531
++
Sbjct: 173 EMEVVN 178
Score = 46.4 bits (110), Expect = 5e-06
Identities = 18/169 (10%), Positives = 54/169 (31%), Gaps = 29/169 (17%)
Query: 131 GRPTPSICWYRGKEEILPDNGHT--MEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGR 188
+ ++ ++ + ++ ++ + T G L I + +D Y ++ ++
Sbjct: 37 TTNQKILEYFPNGKKTVFESVFKDRVDLDKTNG--ALRIYNVSKEDRGDYYMRMLHE-TE 93
Query: 189 AECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKN 248
+ + + + + + P I + S TL E E+K ++
Sbjct: 94 DQWKITM------EVYEM--VSKPMIYW--------ECSNATLTCEVLEGTDVELKLYQG 137
Query: 249 GKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVT 297
+ + S + + + ++ + VN + V
Sbjct: 138 KEHLRS--------LRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN 178
Score = 41.8 bits (98), Expect = 2e-04
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 11/70 (15%)
Query: 14 QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKED 73
+P++ + A TC+V + + L S+ +
Sbjct: 108 KPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLR-----------SLRQKTMSYQWTNL 156
Query: 74 IGVYTCKATN 83
+ CKA N
Sbjct: 157 RAPFKCKAVN 166
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 52.6 bits (125), Expect = 4e-08
Identities = 23/179 (12%), Positives = 44/179 (24%), Gaps = 41/179 (22%)
Query: 26 FTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG 85
TC ++ + W+K+G EL + ++ S +E D G Y C
Sbjct: 19 LTCPLD--SDENLKWEKNGQELPQKHDKHLV-LQDFSEVE-------DSGYYVCYTPASN 68
Query: 86 GVATCSANLIVLEKEESG-------------------EAPKFTKPLKPVIAEAQSPATLK 126
V +++ + K ++ + L
Sbjct: 69 KNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLT 128
Query: 127 ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNT 185
G +I W + I P N ++ Y +
Sbjct: 129 ---CGLTDKTIKWLKDGSIISPLNATKN---------TWNLGNNAKDPRGTYQCQGAKE 175
Score = 43.7 bits (102), Expect = 4e-05
Identities = 19/178 (10%), Positives = 42/178 (23%), Gaps = 40/178 (22%)
Query: 334 KPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAA 393
+ W +G + + + + SEV E++G Y C
Sbjct: 24 DSDENLKWEKNGQELPQKHDKHLVLQD-------FSEV--EDSGYYVCYTPASNKNTYLY 74
Query: 394 ATLAVEEKEESG-------------------EAPKFTKPLKPVIAEAQSPATLKATVTGR 434
V +++ + K ++ + L G
Sbjct: 75 LKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLT---CGL 131
Query: 435 PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM 492
+I W + I P N ++ Y + + + +
Sbjct: 132 TDKTIKWLKDGSIISPLNATKN---------TWNLGNNAKDPRGTYQCQGAKETSNPL 180
Score = 43.7 bits (102), Expect = 4e-05
Identities = 23/164 (14%), Positives = 42/164 (25%), Gaps = 17/164 (10%)
Query: 133 PTPSICWYRGKEEILPDNGHTMEFNPTTG-------ECVLSISEATPQDEAVYSVKAVNT 185
++ W + +E+ + + + C S +Y V +
Sbjct: 25 SDENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKN---TYLYLKARVGS 81
Query: 186 FGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKW 245
A+ A K + +Q D +V L G +KW
Sbjct: 82 ADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLT---CGLTDKTIKW 138
Query: 246 FKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGE 289
K+G I + K G Y+ + E
Sbjct: 139 LKDGSIISP----LNATKNTWNLGNNAKDPRGTYQCQGAKETSN 178
Score = 40.6 bits (94), Expect = 4e-04
Identities = 21/170 (12%), Positives = 42/170 (24%), Gaps = 31/170 (18%)
Query: 239 PTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTK-KTTGKYEIRVVNEAGE------AR 291
+KW KNG+E+ + LV++ ++ + +G Y AR
Sbjct: 25 SDENLKWEKNGQELPQ------KHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKAR 78
Query: 292 TSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVT----------GKPTPLVTW 341
+ A+ + + V + G + W
Sbjct: 79 VGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGLTDKTIKW 138
Query: 342 SHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAV 391
DG+ + + + G Y C +
Sbjct: 139 LKDGSIISPLNATKN--------TWNLGNNAKDPRGTYQCQGAKETSNPL 180
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 49.9 bits (119), Expect = 7e-08
Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 11/107 (10%)
Query: 2 AEVLAPRFIEKI-QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES 60
++V + + Q V + A+ TC+V+ + ++ W + +
Sbjct: 1 SKVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNR 60
Query: 61 VS---------TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
+ ++ + + + D G YTC V T A L VL
Sbjct: 61 IELVRASWHELSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTVLG 106
Score = 39.5 bits (92), Expect = 3e-04
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 8/85 (9%)
Query: 102 SGEAPKFTKPL-KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP-- 158
+ + PL + V A L V S+ W ++ L + +
Sbjct: 2 KVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRI 61
Query: 159 -----TTGECVLSISEATPQDEAVY 178
+ E +S+S+ + DE Y
Sbjct: 62 ELVRASWHELSISVSDVSLSDEGQY 86
Score = 39.5 bits (92), Expect = 3e-04
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 8/85 (9%)
Query: 404 SGEAPKFTKPL-KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP-- 460
+ + PL + V A L V S+ W ++ L + +
Sbjct: 2 KVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRI 61
Query: 461 -----TTGECVLSISEATPQDEAVY 480
+ E +S+S+ + DE Y
Sbjct: 62 ELVRASWHELSISVSDVSLSDEGQY 86
Score = 33.7 bits (77), Expect = 0.029
Identities = 19/113 (16%), Positives = 47/113 (41%), Gaps = 12/113 (10%)
Query: 286 EAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDG 345
+ + + + +TV E T ++ RV+ + S QW P + D
Sbjct: 4 KGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWS----------NPAQQTLYFDDK 53
Query: 346 TPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398
+++ + + + + + +++S+V + G Y+C+ + + + A L V
Sbjct: 54 KALRDNR-IELVRASWHELSISVSDVSLSDEGQYTCS-LFTMPVKTSKAYLTV 104
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 52.3 bits (125), Expect = 3e-07
Identities = 27/210 (12%), Positives = 56/210 (26%), Gaps = 17/210 (8%)
Query: 208 VLEAPTIVRPLQALLVPKDSTVTLE-------AEYTGTPTPEVKWFKNGKEIVSKDIETK 260
+L+ + P ++ +V S T +Y + W N I +
Sbjct: 1 LLDPCGYISP-ESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTII 59
Query: 261 DNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASF 320
+ V + ++ + +TI ++ +
Sbjct: 60 NRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKM 119
Query: 321 --QWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGL 378
+W + T T S T + + +DT C + S V+ N
Sbjct: 120 RCEW----DGGRETHLETNFTLKSEWAT--HKFADCKAKRDTPTSCTVDYSTVYFVN-IE 172
Query: 379 YSCTAVNPVGEAVAAATLAVEEKEESGEAP 408
A N +G+ + + P
Sbjct: 173 VWVEAENALGKVTSDHINFDPVYKVKPNPP 202
Score = 47.3 bits (112), Expect = 1e-05
Identities = 38/338 (11%), Positives = 82/338 (24%), Gaps = 46/338 (13%)
Query: 22 QPALFTCKVE-------GHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDI 74
C ++ + W+ + + ++ +I + S++ + +
Sbjct: 19 SNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIIN--RTASSVTFTDIASLN- 75
Query: 75 GVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT---G 131
TC G + + ++ P KP K G
Sbjct: 76 IQLTCNILTFGQLEQNVYGITIISG---------LPPEKPKNLSCIVNEGKKMRCEWDGG 126
Query: 132 RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAEC 191
R T + K E + T V+A N G+
Sbjct: 127 RETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTS 186
Query: 192 RANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKE 251
KP P + + S + L + + +
Sbjct: 187 DHINFDP--VYKVKP---NPPHNLSVIN--SEELSSILKLTWTNPSIKSVIILKYNIQYR 239
Query: 252 IVSKDIETKDNVTKLVIKQTTKKTTG-----KYEIRV--VNEAGEARTSG-SVTITVAEA 303
++ +++ +Y R+ + E G+ S S +
Sbjct: 240 TKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITY 299
Query: 304 ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTW 341
E P+ + ++ +P G T + W
Sbjct: 300 EDR---------PSKAPSFWYKIDPSHTQGYRTVQLVW 328
Score = 35.8 bits (82), Expect = 0.039
Identities = 29/224 (12%), Positives = 54/224 (24%), Gaps = 47/224 (20%)
Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAI 368
V+ H + + + + + W + + + + I + +
Sbjct: 12 SPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSV----T 67
Query: 369 SEVFPENAGLYSCTAVNP--VGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPAT 426
+C + + + V T+ G P + P
Sbjct: 68 FTDIASLNIQLTCNILTFGQLEQNVYGITIIS------GLPP-------------EKPKN 108
Query: 427 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS 486
L V W G+E L N T++ T +
Sbjct: 109 LSCIVNEGKKMRCEWDGGRETHLETN-FTLKSEWATHKFA-------------------- 147
Query: 487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATL 530
+ K D S + +V AEN G VT
Sbjct: 148 -DCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHIN 190
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 48.1 bits (114), Expect = 4e-07
Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 18/101 (17%)
Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-------------I 257
+V L+ + V + + + WF NG+E+ S + I
Sbjct: 8 TARLVAGLEDVQVYDGEDAVFSLDLSTII--QGTWFLNGEELKSNEPEGQVEPGALRYRI 65
Query: 258 ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
E K +L++ + +G V + S ++TI
Sbjct: 66 EQKGLQHRLILHAVKHQDSGAL---VGFSCPGVQDSAALTI 103
Score = 40.4 bits (94), Expect = 2e-04
Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 17/105 (16%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE----------HYLI 55
R + ++ V + + A+F+ + T W +G EL + E Y I
Sbjct: 8 TARLVAGLEDVQVYDGEDAVFSLDLSTIIQGT--WFLNGEELKSNEPEGQVEPGALRYRI 65
Query: 56 TTVESVSTLEIINPTKEDIGVY-TCKATNIGGVATCSANLIVLEK 99
L + +D G + SA L + E
Sbjct: 66 EQKGLQHRLILHAVKHQDSGALVGFSCPGV----QDSAALTIQES 106
Score = 36.1 bits (83), Expect = 0.006
Identities = 11/96 (11%), Positives = 22/96 (22%), Gaps = 11/96 (11%)
Query: 403 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 462
S + L+ V A ++ W+ EE+ +
Sbjct: 4 GSSGTARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGAL 61
Query: 463 G--------ECVLSISEATPQDE-AVYSVKASSTET 489
+ L + QD A+ +
Sbjct: 62 RYRIEQKGLQHRLILHAVKHQDSGALVGFSCPGVQD 97
Score = 35.7 bits (82), Expect = 0.007
Identities = 10/86 (11%), Positives = 19/86 (22%), Gaps = 10/86 (11%)
Query: 101 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160
S + L+ V A ++ W+ EE+ +
Sbjct: 4 GSSGTARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGAL 61
Query: 161 G--------ECVLSISEATPQDEAVY 178
+ L + QD
Sbjct: 62 RYRIEQKGLQHRLILHAVKHQDSGAL 87
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 50.1 bits (119), Expect = 4e-07
Identities = 25/136 (18%), Positives = 37/136 (27%), Gaps = 9/136 (6%)
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
L I N T D G Y C + L A + V
Sbjct: 84 ALRIHNVTASDSGKYLCYFQDGDFYEKALVELK--------VAALGSDLHVDVKGYKDGG 135
Query: 123 ATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
L+ TG P P I W K E +P + + V + S
Sbjct: 136 IHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCT 195
Query: 182 AVNTFGRAECRANLVL 197
++ E A++ +
Sbjct: 196 IRSSLLGLEKTASISI 211
Score = 49.3 bits (117), Expect = 8e-07
Identities = 40/245 (16%), Positives = 64/245 (26%), Gaps = 48/245 (19%)
Query: 297 TITVAEAETVMMDVRVESHPTASF---QWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKE 353
I E + + +A +W S VV P +
Sbjct: 13 PILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTS 72
Query: 354 VTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKP 413
+ T G L I V ++G Y C + A L A +
Sbjct: 73 ILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELK--------VAALGSDL 124
Query: 414 LKPVIAEAQSPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEA 472
V L+ TG P P I W K E +P ++
Sbjct: 125 HVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIP-----------------TVEAP 167
Query: 473 TPQDEA-VYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
D +Y+V AS + V+C + + TA++S
Sbjct: 168 VVADGVGLYAVAASVI-----------------MRGSSGEGVSCTIRSSLLGLEKTASIS 210
Query: 532 LLPES 536
+ +
Sbjct: 211 -IADP 214
Score = 45.1 bits (106), Expect = 2e-05
Identities = 30/221 (13%), Positives = 58/221 (26%), Gaps = 46/221 (20%)
Query: 109 TKPLKPVIAEAQSPATLKATVTGRPTPS---ICWYRGKEE---ILPDNGHTMEFN----- 157
P P++A A L + + + W + +G +E
Sbjct: 8 LGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPY 67
Query: 158 ----------PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPR 207
T G+ L I T D Y + + L
Sbjct: 68 RGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELK----------- 116
Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTPEVKWFKNGKEIVSKDIETKDN---- 262
A + KD + LE TG P P+++W N E +
Sbjct: 117 --VAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVG 174
Query: 263 ----VTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
++++ ++ + + + S++I
Sbjct: 175 LYAVAASVIMRGSSG---EGVSCTIRSSLLGLEKTASISIA 212
Score = 40.8 bits (95), Expect = 5e-04
Identities = 11/98 (11%), Positives = 30/98 (30%), Gaps = 3/98 (3%)
Query: 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEG-HPLPTMTWQKDGTE--LHATEHYLITTVES 60
+A + V +++ C+ G +P P + W + E + V
Sbjct: 116 KVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGL 175
Query: 61 VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
+ + +C + +A++ + +
Sbjct: 176 YAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIAD 213
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 49.7 bits (118), Expect = 5e-07
Identities = 21/190 (11%), Positives = 40/190 (21%), Gaps = 30/190 (15%)
Query: 14 QPVVSHQEQPALFTCKVEGHPLPTMTW--QKDGTELHATEHYLITTVESVSTLEIINPTK 71
+ + C +L + +
Sbjct: 10 RVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIR--------- 60
Query: 72 EDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG 131
E C + ++ + P TL V G
Sbjct: 61 EPETQPVCFFRCARRTLQARGLIRTFQRPDR-----VELMPLPPWQPVGENFTLSCRVPG 115
Query: 132 ---RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGR 188
R + ++ RG +E++ + ++ A +S
Sbjct: 116 AGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFS--------- 166
Query: 189 AECRANLVLR 198
CRA L LR
Sbjct: 167 --CRAELDLR 174
Score = 34.7 bits (79), Expect = 0.045
Identities = 19/147 (12%), Positives = 35/147 (23%), Gaps = 18/147 (12%)
Query: 341 WSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400
S + G Q D E C A + +
Sbjct: 38 TSLRRNGTQRGLRWLARQLVD----------IREPETQPVCFFRCARRTLQARGLIRTFQ 87
Query: 401 KEESGEAPKFTKPLKPVIAEAQSPATLKATVTG---RPTPSICWYRGKEEILPDNGHTME 457
+ + P TL V G R + ++ RG +E++ +
Sbjct: 88 RPDR-----VELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEP 142
Query: 458 FNPTTGECVLSISEATPQDEAVYSVKA 484
++ A +S +A
Sbjct: 143 PRARGAVLTATVLARREDHGANFSCRA 169
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 49.8 bits (118), Expect = 6e-07
Identities = 44/229 (19%), Positives = 70/229 (30%), Gaps = 25/229 (10%)
Query: 297 TITVAEAETVMMDVRVE-SHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVT 355
+ V ++V++D +H +WF+ + + S M + + +
Sbjct: 9 LVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRS 68
Query: 356 IYQDTDGLCKLAISEVFPENAGLYSCTA-VNPVGEAVAAATLAVEEKEESGEAPKFTKPL 414
D +L ++E + Y C G A A A L V K E+ E L
Sbjct: 69 PPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTL 128
Query: 415 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATP 474
+ AQ AT + G P P I WYR NG +E S
Sbjct: 129 SVMEDSAQEIATCNSR-NGNPAPKITWYR--------NGQRLEVPVEMNPEGYMTSRTVR 179
Query: 475 QDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
+ + S+ S L + D+ C A
Sbjct: 180 EASGLLSLT--------------STLYLRLRKDDRDASFHCAAHYSLPE 214
Score = 44.8 bits (105), Expect = 3e-05
Identities = 32/154 (20%), Positives = 50/154 (32%), Gaps = 6/154 (3%)
Query: 62 STLEIINPTKEDIGVYTCKA-TNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ 120
L + D Y C G A +A L V K E+ E L + AQ
Sbjct: 77 GRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQ 136
Query: 121 SPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 180
AT + G P P I WYR + + E T+ + + +
Sbjct: 137 EIATCNSR-NGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRL 195
Query: 181 KAVNTFGRAECRANLVLRKATTIDKPRVLEAPTI 214
+ + C A+ L + + L++PT
Sbjct: 196 RKDDRDASFHCAAHYSLPE----GRHGRLDSPTF 225
Score = 41.3 bits (96), Expect = 4e-04
Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 14/84 (16%)
Query: 16 VVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLITTVESVSTLE--------- 65
V + TC G+P P +TW ++G L + T+
Sbjct: 129 SVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLT 188
Query: 66 ---IINPTKEDIG-VYTCKATNIG 85
+ K+D + C A
Sbjct: 189 STLYLRLRKDDRDASFHCAAHYSL 212
Score = 34.0 bits (77), Expect = 0.093
Identities = 29/183 (15%), Positives = 52/183 (28%), Gaps = 33/183 (18%)
Query: 227 STVTLEAEYTGTPTP-EVKWFKNGKEIVSKDIETKDNVTK-------------------- 265
+V L+ TGT ++WF + + + +
Sbjct: 16 KSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDS 75
Query: 266 ---LVIKQTTKKTTGKYEIRV-VNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQ 321
LV+ + Y V AG A + + + T + +
Sbjct: 76 QGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSA 135
Query: 322 WFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSC 381
I + G P P +TW +G ++ E+ S E +GL S
Sbjct: 136 QEIAT-CNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYM-------TSRTVREASGLLSL 187
Query: 382 TAV 384
T+
Sbjct: 188 TST 190
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 48.1 bits (114), Expect = 2e-06
Identities = 35/206 (16%), Positives = 63/206 (30%), Gaps = 32/206 (15%)
Query: 115 VIAEAQSPATL----KATVTGRPTPSICWYRGKEEILPDNGHTMEFNP---------TTG 161
V E + ATL +V I W + K+ +L M P T
Sbjct: 4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITN 63
Query: 162 ECVLSISEATPQDEAVYS---VKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPL 218
+ I P DE Y +K + E A + L P +
Sbjct: 64 NLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSI---------- 113
Query: 219 QALLVPKDSTVTLEAEYTG-TPTPEVKWFKNGKEIVSKDIE-TKDNVTKLVIKQTT---- 272
+P + + +G P P + W +NG+E+ + + ++D T+L +
Sbjct: 114 SDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN 173
Query: 273 KKTTGKYEIRVVNEAGEARTSGSVTI 298
T + + + +
Sbjct: 174 MTTNHSFMCLIKYGHLRVNQTFNWNT 199
Score = 41.9 bits (98), Expect = 2e-04
Identities = 28/169 (16%), Positives = 50/169 (29%), Gaps = 27/169 (15%)
Query: 13 IQPVVSHQEQPALFTCK----VEGHPLPTMTWQKDGTELHATEHYLITTVESVS------ 62
+ V ++ A +C VE + WQK+ + +
Sbjct: 1 VIHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD 60
Query: 63 -----TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIA 117
++ I+ D G Y C A +L + P I+
Sbjct: 61 ITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLS------VKADFPTPSIS 114
Query: 118 EAQSPATLKATVT-----GRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
+ + P + + G P P + W EE+ N T+ +P T
Sbjct: 115 DFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAIN-TTVSQDPETE 162
Score = 40.7 bits (95), Expect = 4e-04
Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 9/86 (10%)
Query: 4 VLAPRFIEKIQPVVSHQEQPALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVES-- 60
V A I C G P P ++W ++G EL+A + E+
Sbjct: 104 VKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETEL 163
Query: 61 ---VSTLEIINPTKEDIGVYTCKATN 83
S L+ + C
Sbjct: 164 YAVSSKLDF---NMTTNHSFMCLIKY 186
Score = 40.4 bits (94), Expect = 5e-04
Identities = 44/246 (17%), Positives = 70/246 (28%), Gaps = 57/246 (23%)
Query: 296 VTITVAEAETVMM----DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEG 351
+ +T E + +V VE W + V L S D E
Sbjct: 2 IHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMV--------LTMMSGDMNIWPEY 53
Query: 352 KEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFT 411
K TI+ T+ L + I + P + G Y C + +A E
Sbjct: 54 KNRTIFDITNNLS-IVILALRPSDEGTYECVVLKYEKDAF------KREHLAEVTLSVKA 106
Query: 412 KPLKPVIAEAQSPATLKATVT-----GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466
P I++ + P + + G P P + W EE+ N T+ +P T
Sbjct: 107 DFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAIN-TTVSQDPETE--- 162
Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC 526
+Y+V S L + T C + V
Sbjct: 163 ------------LYAVS--------------SKLDFNMTTN---HSFMCLIKYGHLRVNQ 193
Query: 527 TATLSL 532
T +
Sbjct: 194 TFNWNT 199
Score = 40.0 bits (93), Expect = 9e-04
Identities = 23/160 (14%), Positives = 43/160 (26%), Gaps = 19/160 (11%)
Query: 239 PTPEVKWFKNGKEIVSKD------IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART 292
V +G + + + +N++ +VI G YE V+ +A
Sbjct: 35 EKKMVLTMMSGDMNIWPEYKNRTIFDITNNLS-IVILALRPSDEGTYECVVLKYEKDAFK 93
Query: 293 SGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVT-----GKPTPLVTWSHDGTP 347
AE + P+ S S + G P P ++W +G
Sbjct: 94 REH------LAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEE 147
Query: 348 MKEGKEVTIYQDTDGLCKLAISEVFPENA-GLYSCTAVNP 386
+ L ++ F + C
Sbjct: 148 LNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYG 187
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 47.5 bits (112), Expect = 6e-06
Identities = 26/186 (13%), Positives = 40/186 (21%), Gaps = 19/186 (10%)
Query: 211 APTIVRPLQALLVPKDSTVTLE-AEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIK 269
P L +VTL V W S +L+++
Sbjct: 6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLR 65
Query: 270 QTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASF--QWFIHSE 327
+G Y +G+V + V P ++ +W S
Sbjct: 66 SVQLHDSGNYSCYRAGR-----PAGTVHLLVDVPPEEPQLSCFRKSPLSNVVCEWGPRST 120
Query: 328 PVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYS-----CT 382
T V Q + K S G S
Sbjct: 121 ----PSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQK--FSCQLAVPEGDSSFYIVSMC 174
Query: 383 AVNPVG 388
+ VG
Sbjct: 175 VASSVG 180
Score = 47.5 bits (112), Expect = 6e-06
Identities = 38/283 (13%), Positives = 82/283 (28%), Gaps = 20/283 (7%)
Query: 6 APRFIEKIQPVVSHQEQPALFTCK-VEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
P + S TC VE T+ W + + L
Sbjct: 6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAA-GSHPSRWAGMGR--RL 62
Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPAT 124
+ + D G Y+C G + +L+V E + F K + P
Sbjct: 63 LLRSVQLHDSGNYSCYR---AGRPAGTVHLLVDVPPEEPQLSCFRKSPLSNVVCEWGP-- 117
Query: 125 LKATVTGRPTPSICWYR-GKEEILPDNGHTMEFNPTTGE--CVLSISEATPQDEAVYSVK 181
+ T ++ R + D +++ + + C L++ E + S+
Sbjct: 118 --RSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPE-GDSSFYIVSMC 174
Query: 182 AVNTFGRAECRA-NLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPT 240
++ G + D P + + R + L V + + +
Sbjct: 175 VASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRL-R 233
Query: 241 PEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRV 283
E+++ + + KD VI ++ +++
Sbjct: 234 FELRY-RAERSKTFTTWMVKDLQHHCVIHDAWSGL--RHVVQL 273
Score = 40.6 bits (94), Expect = 0.001
Identities = 13/125 (10%), Positives = 27/125 (21%), Gaps = 14/125 (11%)
Query: 404 SGEAPKFTKPLKPVIAEAQSPATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 462
P + + TL V ++ W K
Sbjct: 3 PRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRR- 61
Query: 463 GECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAG 522
L + D YS + + + + ++C ++
Sbjct: 62 ----LLLRSVQLHDSGNYSCYRA--------GRPAGTVHLLVDVPPEEPQLSCFRKSPLS 109
Query: 523 SVTCT 527
+V C
Sbjct: 110 NVVCE 114
Score = 36.0 bits (82), Expect = 0.026
Identities = 10/79 (12%), Positives = 15/79 (18%), Gaps = 6/79 (7%)
Query: 102 SGEAPKFTKPLKPVIAEAQSPATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160
P + + TL V ++ W K
Sbjct: 3 PRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRR- 61
Query: 161 GECVLSISEATPQDEAVYS 179
L + D YS
Sbjct: 62 ----LLLRSVQLHDSGNYS 76
Score = 36.0 bits (82), Expect = 0.028
Identities = 18/118 (15%), Positives = 30/118 (25%), Gaps = 11/118 (9%)
Query: 329 VVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
V + V W +L + V ++G YSC G
Sbjct: 29 PGVEPEDNATVHWVLRKPAAGSHPSRWAGMGR----RLLLRSVQLHDSGNYSCYR---AG 81
Query: 389 EAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE 446
L V+ E + F K + P + T ++ R +
Sbjct: 82 RPAGTVHLLVDVPPEEPQLSCFRKSPLSNVVCEWGP----RSTPSLTTKAVLLVRKFQ 135
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 45.2 bits (107), Expect = 1e-05
Identities = 36/181 (19%), Positives = 60/181 (33%), Gaps = 31/181 (17%)
Query: 208 VLEAPTI-VRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKL 266
L P++ P LVP + VTL P V ++ K S+ + L
Sbjct: 5 PLPKPSLQALPSS--LVPLEKPVTL----RCQGPPGVDLYRLEKLSSSRYQDQ----AVL 54
Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHS 326
I + G+Y N + + S + + V + P+ S
Sbjct: 55 FIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVA---------TGVFAKPSLS----AQP 101
Query: 327 EPVVVTGKPTPLVTWSHDGTPM----KEGKEVTIYQDTDGLCK--LAISEVFPENAGLYS 380
P V +G L + G KEG + Y++ + + I V ++G Y
Sbjct: 102 GPAVSSGGDVTLQCQTRYGFDQFALYKEG-DPAPYKNPERWYRASFPIITVTAAHSGTYR 160
Query: 381 C 381
C
Sbjct: 161 C 161
Score = 29.4 bits (66), Expect = 2.3
Identities = 16/68 (23%), Positives = 21/68 (30%), Gaps = 9/68 (13%)
Query: 325 HSEPVVVTGKPTPLVTWSHDGTPM----KEGKEVTIYQDTDGLCKLAISEVFPENAGLYS 380
+V KP L G + K + YQD L I + AG Y
Sbjct: 14 LPSSLVPLEKPVTLRCQGPPGVDLYRLEKLSS--SRYQDQA---VLFIPAMKRSLAGRYR 68
Query: 381 CTAVNPVG 388
C+ N
Sbjct: 69 CSYQNGSL 76
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 45.9 bits (107), Expect = 3e-05
Identities = 22/129 (17%), Positives = 40/129 (31%), Gaps = 10/129 (7%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHAT--EHYLITTVESVSTL 64
+ + A C + L + W+ L A ++ L+ L
Sbjct: 534 DKSKGSYRQHFFKHGGTAELKCSQK-SNLARVFWKFQNGVLKAESPKYGLMGR----KNL 588
Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPAT 124
I N ++ D GVY C + ++ E PK + P ++ Q+ +
Sbjct: 589 LIFNLSEGDSGVYQCLSEE-RVKNKTVFQVVAKHVLEVKVVPKP--VVAPTLSVVQTEGS 645
Query: 125 LKATVTGRP 133
AT
Sbjct: 646 RIATKVLVA 654
Score = 42.4 bits (98), Expect = 3e-04
Identities = 16/98 (16%), Positives = 24/98 (24%), Gaps = 3/98 (3%)
Query: 335 PTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAA 394
V W +K L I + ++G+Y C + V
Sbjct: 560 NLARVFWKFQNGVLKAESPKYGLMGRKNLL---IFNLSEGDSGVYQCLSEERVKNKTVFQ 616
Query: 395 TLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT 432
+A E P V+ S K V
Sbjct: 617 VVAKHVLEVKVVPKPVVAPTLSVVQTEGSRIATKVLVA 654
Score = 29.7 bits (65), Expect = 3.4
Identities = 11/85 (12%), Positives = 21/85 (24%), Gaps = 4/85 (4%)
Query: 133 PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECR 192
+ W + ++ G L I + D VY +
Sbjct: 560 NLARVFWKFQNGVLKAESPK----YGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVF 615
Query: 193 ANLVLRKATTIDKPRVLEAPTIVRP 217
+ P+ + APT+
Sbjct: 616 QVVAKHVLEVKVVPKPVVAPTLSVV 640
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 42.6 bits (100), Expect = 3e-05
Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 13/111 (11%)
Query: 10 IEKIQPVVSHQEQPALFTCKVEG--HPLPTMTWQKDGTEL---HATEHYLI-------TT 57
IE + + + + C + + + W++ L +A + I
Sbjct: 7 IETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVA 66
Query: 58 VESVSTLEIINPTKEDIGVYTCK-ATNIGGVATCSANLIVLEKEESGEAPK 107
L + + T D G Y C T G T L VLE + +
Sbjct: 67 PGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHGAR 117
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 44.8 bits (105), Expect = 4e-05
Identities = 26/192 (13%), Positives = 51/192 (26%), Gaps = 21/192 (10%)
Query: 208 VLEAPTIVRPLQALLVPKDSTVTL-------EAEYTGTPTPEVKWFKNGKEIVSKDIETK 260
+L+ + P ++ +V S T +Y + W N I +
Sbjct: 2 LLDPCGYISP-ESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTII 60
Query: 261 DNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASF 320
+ V + ++ + +TI ++ +
Sbjct: 61 NRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKM 120
Query: 321 --QWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGL 378
+W E T T S + + +DT C + S V+ N
Sbjct: 121 RCEWDGGRE----THLETNFTLKSE--WATHKFADCKAKRDTPTSCTVDYSTVYFVN--- 171
Query: 379 YS--CTAVNPVG 388
A N +G
Sbjct: 172 IEVWVEAENALG 183
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 44.1 bits (103), Expect = 4e-05
Identities = 25/154 (16%), Positives = 47/154 (30%), Gaps = 26/154 (16%)
Query: 7 PRFIEKIQPVVSHQE-QPALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
P +E +PVV+ TC++ ++ W+ T L A + + S L
Sbjct: 7 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQ-----SDTGRSVL 61
Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEA---QS 121
+ N + G C + G + L+V + P + ++ A
Sbjct: 62 TVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV-----------YAFPNQLTVSPAALVPG 110
Query: 122 PATLKATVTG-----RPTPSICWYRGKEEILPDN 150
+ T S G +E+
Sbjct: 111 DPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQ 144
Score = 36.4 bits (83), Expect = 0.014
Identities = 22/188 (11%), Positives = 42/188 (22%), Gaps = 36/188 (19%)
Query: 334 KPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAA 393
V W T + Q G L + AG C
Sbjct: 35 DRGASVQWRGLDTSLGAV------QSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHT 88
Query: 394 ATLAVEEKEESGEAPKFTKPLKPVIAEA---QSPATLKATVTGRPTPSICWYRGKEEILP 450
L V + P + ++ A + T P
Sbjct: 89 VQLLV-----------YAFPNQLTVSPAALVPGDPEVACTAHKVT--------------P 123
Query: 451 DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQI 510
+ + + F+ G L ++A + + E + + +
Sbjct: 124 VDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVT--ERWRLPPLGTPVP 181
Query: 511 GDVTCRAE 518
+ C+A
Sbjct: 182 PALYCQAT 189
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 43.6 bits (103), Expect = 4e-05
Identities = 31/185 (16%), Positives = 54/185 (29%), Gaps = 24/185 (12%)
Query: 209 LEAPTI-VRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGK--EIVSKDIETKDNVTK 265
L P I P +VPK+ VT+ + E + G + + N K
Sbjct: 2 LPKPFIWAEPHF--MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVK 58
Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIH 325
I + G+Y + S + + V + + +H
Sbjct: 59 FYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVV-------------TEMYDTPTLSVH 105
Query: 326 SEPVVVTGKPTPLVTWSHDGTPM----KEGKEVTI-YQDTDGLCKLAISEVFPENAGLYS 380
P V++G+ T M KEG+ + + + V + G Y
Sbjct: 106 PGPEVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYR 165
Query: 381 CTAVN 385
C
Sbjct: 166 CFGSY 170
Score = 28.2 bits (63), Expect = 6.2
Identities = 10/74 (13%), Positives = 17/74 (22%), Gaps = 12/74 (16%)
Query: 325 HSEPVVVTGK----------PTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPE 374
+V K +G+ + + K I ++
Sbjct: 10 EPHFMVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRP--KPPERINKVKFYIPDMNSR 67
Query: 375 NAGLYSCTAVNPVG 388
AG YSC
Sbjct: 68 MAGQYSCIYRVGEL 81
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 42.1 bits (98), Expect = 9e-05
Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 21/104 (20%)
Query: 22 QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS---------TLEIINPTKE 72
+ C+V+ H ++ W + + ++ I N
Sbjct: 54 GTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALA 113
Query: 73 DIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVI 116
D G YTC V T + + VL P KP+I
Sbjct: 114 DEGEYTCSIFT-MPVRTAKSLVTVLG-----------IPQKPII 145
Score = 33.2 bits (75), Expect = 0.078
Identities = 15/78 (19%), Positives = 20/78 (25%), Gaps = 7/78 (8%)
Query: 108 FTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP-------TT 160
A LK V S+ W ++ L + T
Sbjct: 41 SQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTP 100
Query: 161 GECVLSISEATPQDEAVY 178
E +SIS DE Y
Sbjct: 101 HELSISISNVALADEGEY 118
Score = 33.2 bits (75), Expect = 0.078
Identities = 15/78 (19%), Positives = 20/78 (25%), Gaps = 7/78 (8%)
Query: 410 FTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP-------TT 462
A LK V S+ W ++ L + T
Sbjct: 41 SQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTP 100
Query: 463 GECVLSISEATPQDEAVY 480
E +SIS DE Y
Sbjct: 101 HELSISISNVALADEGEY 118
Score = 30.1 bits (67), Expect = 0.84
Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 23/120 (19%)
Query: 299 TVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQ 358
TV TV++ +V+ H +S QW P + + +++ + + +
Sbjct: 49 TVVAGGTVVLKCQVKDHEDSSLQWS----------NPAQQTLYFGEKRALRDNR-IQLVT 97
Query: 359 DTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVI 418
T ++IS V + G Y+C+ + + A + + V P KP+I
Sbjct: 98 STPHELSISISNVALADEGEYTCS-IFTMPVRTAKSLVTVLG-----------IPQKPII 145
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 44.2 bits (103), Expect = 1e-04
Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 4/76 (5%)
Query: 7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
+Q V +C +E T +W+ + E + L I
Sbjct: 501 KPDKAPLQKVSLAPNSRYYLSCPMES-RHATYSWRHKENVEQSCEPGHQSPN---CILFI 556
Query: 67 INPTKEDIGVYTCKAT 82
N T + G Y C+A
Sbjct: 557 ENLTAQQYGHYFCEAQ 572
Score = 41.9 bits (97), Expect = 5e-04
Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 5/67 (7%)
Query: 335 PTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAV-NPVGEAVAA 393
+W H + + + C L I + + G Y C A
Sbjct: 527 RHATYSWRHKENVEQSCEPGHQSPN----CILFIENLTAQQYGHYFCEAQEGSYFREAQH 582
Query: 394 ATLAVEE 400
L E+
Sbjct: 583 WQLLPED 589
Score = 30.0 bits (66), Expect = 2.4
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 6/65 (9%)
Query: 133 PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAV-NTFGRAEC 191
+ W + + C+L I T Q Y +A ++ R
Sbjct: 527 RHATYSWRHKENVEQSCEPGH-----QSPNCILFIENLTAQQYGHYFCEAQEGSYFREAQ 581
Query: 192 RANLV 196
L+
Sbjct: 582 HWQLL 586
Score = 30.0 bits (66), Expect = 2.7
Identities = 7/42 (16%), Positives = 11/42 (26%)
Query: 239 PTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYE 280
W S + + L I+ T + G Y
Sbjct: 527 RHATYSWRHKENVEQSCEPGHQSPNCILFIENLTAQQYGHYF 568
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 41.7 bits (97), Expect = 2e-04
Identities = 24/191 (12%), Positives = 50/191 (26%), Gaps = 33/191 (17%)
Query: 14 QPVVSHQEQPALFTCKVEGHPLPTMTW---QKDGTELHATEHYLITTVESVSTLEIINPT 70
+ + + C P + + L + V ++S
Sbjct: 10 KKLAVEPKGSLEVNCSTTC-NQPEVGGLETSLNKILLDEQAQWKHYLVSNIS-------- 60
Query: 71 KEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT 130
V C T G + ++N+ V + L+P + T++ V
Sbjct: 61 --HDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILT-----LQPTLVAVGKSFTIECRVP 113
Query: 131 G---RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFG 187
+ ++ +RG E + + P + + +S
Sbjct: 114 TVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFS-------- 165
Query: 188 RAECRANLVLR 198
C A L L
Sbjct: 166 ---CLAVLDLM 173
Score = 35.9 bits (82), Expect = 0.018
Identities = 21/183 (11%), Positives = 50/183 (27%), Gaps = 33/183 (18%)
Query: 319 SFQWFIHSEPVVV-----------TGKPTPLVTW---SHDGTPMKEGKEVTIYQDTDGLC 364
F+ + + + V T P V S + + E + Y
Sbjct: 2 VFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDEQAQWKHYL------ 55
Query: 365 KLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSP 424
+S + + + C + + ++V + L+P +
Sbjct: 56 ---VSNI--SHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILT-----LQPTLVAVGKS 105
Query: 425 ATLKATVTG---RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYS 481
T++ V + ++ +RG E + + P + + +S
Sbjct: 106 FTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFS 165
Query: 482 VKA 484
A
Sbjct: 166 CLA 168
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 42.2 bits (99), Expect = 2e-04
Identities = 27/169 (15%), Positives = 50/169 (29%), Gaps = 21/169 (12%)
Query: 222 LVPKDSTVTLEAEYTGTPTPEVKWFKNGK--EIVSKDIETKDNVTKLVIKQTTKKTTGKY 279
+VPK+ VT+ + E + G + + N K I + G+Y
Sbjct: 17 MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQY 75
Query: 280 EIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLV 339
+ S + + V + + +H P V++G+
Sbjct: 76 SCIYRVGELWSEPSNLLDLVV-------------TEMYDTPTLSVHPGPEVISGEKVTFY 122
Query: 340 TWSHDGTPM----KEGKEVTI-YQDTDGLCKLAISEVFPENAGLYSCTA 383
T M KEG+ + + + V + G Y C
Sbjct: 123 CRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFG 171
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 41.4 bits (97), Expect = 3e-04
Identities = 29/187 (15%), Positives = 56/187 (29%), Gaps = 29/187 (15%)
Query: 208 VLEAPTI-VRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK- 265
L PT+ P ++ ++VT+ + T E + K + K
Sbjct: 2 PLPKPTLWAEPGS--VISWGNSVTIWCQGT-LEAREYRLDKEESPAPWDRQNPLEPKNKA 58
Query: 266 -LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFI 324
I T+ G+Y + G ++ S + + + + +
Sbjct: 59 RFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVM-------------TGAYSKPTLSA 105
Query: 325 HSEPVVVTGKPTPLVTWSHDGTPM----KEGKEVTI----YQDTDGLCK--LAISEVFPE 374
P+V +GK L+ S KE + + + +S V
Sbjct: 106 LPSPLVTSGKSVTLLCQSRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSV 165
Query: 375 NAGLYSC 381
+ G Y C
Sbjct: 166 HGGTYRC 172
Score = 31.7 bits (72), Expect = 0.47
Identities = 23/165 (13%), Positives = 48/165 (29%), Gaps = 7/165 (4%)
Query: 15 PVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDI 74
V+S C+ K+ + + ++ + I + T++
Sbjct: 14 SVIS-WGNSVTIWCQGT-LEAREYRLDKEESPAP-WDRQNPLEPKNKARFSIPSMTEDYA 70
Query: 75 GVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT 134
G Y C + G + S L ++ P + P++ +S TL + P
Sbjct: 71 GRYRCYYRSPVGWSQPSDPLELVMTGAY-SKPTLSALPSPLVTSGKS-VTLL-CQSRSPM 127
Query: 135 PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYS 179
+ + + P E + +S T Y
Sbjct: 128 DTFLLCK-ERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYR 171
Score = 29.4 bits (66), Expect = 2.6
Identities = 23/167 (13%), Positives = 47/167 (28%), Gaps = 16/167 (9%)
Query: 325 HSEPVVVTGKP----------TPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPE 374
V+ G + +P ++ + + +I + +
Sbjct: 11 EPGSVISWGNSVTIWCQGTLEAREYRLDKEESPAPWDRQNPLEPKNKA--RFSIPSMTED 68
Query: 375 NAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR 434
AG Y C +PVG + + L + P + P++ +S TL +
Sbjct: 69 YAGRYRCYYRSPVGWSQPSDPLELVMTGAY-SKPTLSALPSPLVTSGKS-VTLL-CQSRS 125
Query: 435 PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYS 481
P + + + P E + +S T Y
Sbjct: 126 PMDTFLLCK-ERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYR 171
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 41.0 bits (96), Expect = 4e-04
Identities = 29/190 (15%), Positives = 57/190 (30%), Gaps = 30/190 (15%)
Query: 208 VLEAPTI-VRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGK--EIVSKDIETKDNVT 264
L T+ P ++ + ++VT+ + T E + K G +++ N
Sbjct: 2 NLSKATLWAEPGS--VISRGNSVTIRCQGT-LEAQEYRLVKEGSPEPWDTQNPLEPKNKA 58
Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFI 324
+ I T+ G+Y + AG + S + + V + +
Sbjct: 59 RFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGF-----------YNKPTLS--A 105
Query: 325 HSEPVVVTGKPTPLVTWSHDGTPM----KEGKEVTIY-------QDTDGLCKLAISEVFP 373
PVV +G+ L S +EG + + V P
Sbjct: 106 LPSPVVTSGENVTLQCGSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTP 165
Query: 374 ENAGLYSCTA 383
+ + C
Sbjct: 166 SHRWMLRCYG 175
Score = 31.4 bits (71), Expect = 0.46
Identities = 25/174 (14%), Positives = 43/174 (24%), Gaps = 29/174 (16%)
Query: 325 HSEPVVVTGKPTPLVT---WSHDGTPM----KEGKEVTIY----QDTDGLCKLAISEVFP 373
V+ G VT KEG + + +I +
Sbjct: 11 EPGSVISRGNS---VTIRCQGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTE 67
Query: 374 ENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSP-ATLKATVT 432
+AG Y C +P G + + L + KP ++ SP T VT
Sbjct: 68 HHAGRYRCYYYSPAGWSEPSDPLELVVTGF---------YNKPTLSALPSPVVTSGENVT 118
Query: 433 -----GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYS 481
+ L + + + + TP +
Sbjct: 119 LQCGSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLR 172
Score = 28.3 bits (63), Expect = 5.3
Identities = 23/171 (13%), Positives = 46/171 (26%), Gaps = 18/171 (10%)
Query: 15 PVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDI 74
V+S + C+ K+G+ + ++ + I + T+
Sbjct: 14 SVIS-RGNSVTIRCQGT-LEAQEYRLVKEGS-PEPWDTQNPLEPKNKARFSIPSMTEHHA 70
Query: 75 GVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP-ATLKATVT--- 130
G Y C + G + S L ++ KP ++ SP T VT
Sbjct: 71 GRYRCYYYSPAGWSEPSDPLELVVTGF---------YNKPTLSALPSPVVTSGENVTLQC 121
Query: 131 --GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYS 179
+ L + + + + TP +
Sbjct: 122 GSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLR 172
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 41.0 bits (95), Expect = 5e-04
Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 11/99 (11%)
Query: 3 EVLAPRFIEKIQPVVSHQE-QPALFTCKV----EGHPLPTMTWQKDGTELHATEHYLITT 57
EV A I + + +P +C + E P T +W +
Sbjct: 119 EVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDP------E 172
Query: 58 VESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
S L + ++ TC+ G T + +
Sbjct: 173 TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQL 211
Score = 39.8 bits (92), Expect = 0.001
Identities = 27/215 (12%), Positives = 61/215 (28%), Gaps = 34/215 (15%)
Query: 113 KPVIAEAQSPATLKATVT-------GRPTPSICWYRGKEEILPDNG-------------- 151
K V + + + + P + W+R E
Sbjct: 8 KSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPET 67
Query: 152 ---HTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRV 208
+ + C LSI +A +D Y + R + ++ +
Sbjct: 68 QGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFR----VERGRDVKYSYQQNKLNLEVTAL 123
Query: 209 LEAPTIVRPLQALLVPKDSTVTLEAEYT--GTPTPEVKWFKNGKEIVSKDIETKDNVTKL 266
+E P I L+ L + + ++ + P W N +S ++L
Sbjct: 124 IEKPDIH-FLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNA---LSPLDPETTRSSEL 179
Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA 301
+ + ++ + + T +V + V+
Sbjct: 180 TLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNVS 214
Score = 37.9 bits (87), Expect = 0.004
Identities = 24/164 (14%), Positives = 48/164 (29%), Gaps = 11/164 (6%)
Query: 235 YTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSG 294
T P VK G+ + D++ K N + L I + TG Y RV +
Sbjct: 55 ATNNPDRRVKPETQGRFRLLGDVQKK-NCS-LSIGDARMEDTGSYFFRVERGRDVKYSYQ 112
Query: 295 SVTITVAEAETVMMDVRVESHPTASFQW--FIHSEPVVVTGKPTPLVTWSHDGTPMKEGK 352
+ + + P S + S P P +W+ + + +
Sbjct: 113 QNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPE 172
Query: 353 EVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATL 396
+L ++ ++ +C + T+
Sbjct: 173 TTRS-------SELTLTPRPEDHGTNLTCQMKRQGAQVTTERTV 209
Score = 35.6 bits (81), Expect = 0.023
Identities = 37/254 (14%), Positives = 63/254 (24%), Gaps = 69/254 (27%)
Query: 297 TITVAEAETVMMDVRVESHPTASFQ--------WF-----IHSEPVVVTGKPTPLVTWSH 343
++TV E V++ S+P S+ WF + VV T P V
Sbjct: 9 SVTVQEGLCVLVPCSF-SYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPET 67
Query: 344 DGTPMKEGKEVTIYQDTD-GLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKE 402
G + D C L+I + E+ G Y + + +
Sbjct: 68 QG-------RFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEV 120
Query: 403 ESGEAPKFTKPLKPVIAEAQSPATLKATVT----GRPTPSICWYRGKEEILPDNGHTMEF 458
+ E+ P L ++ P + W L
Sbjct: 121 TALIEKPDIHF--LEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTR--- 175
Query: 459 NPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAE 518
S L ++ D ++TC+ +
Sbjct: 176 --------------------------------------SSELTLTPRPEDHGTNLTCQMK 197
Query: 519 NVAGSVTCTATLSL 532
VT T+ L
Sbjct: 198 RQGAQVTTERTVQL 211
Score = 34.4 bits (78), Expect = 0.059
Identities = 22/140 (15%), Positives = 39/140 (27%), Gaps = 16/140 (11%)
Query: 63 TLEIINPTKEDIGVYTCKATNIGGV-ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQS 121
+L I + ED G Y + V + N + LE E P E+
Sbjct: 83 SLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIH---FLEPLESGR 139
Query: 122 PATLKATVT----GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAV 177
P L ++ P + W N + TT L+++
Sbjct: 140 PTRLSCSLPGSCEAGPPLTFSWTG--------NALSPLDPETTRSSELTLTPRPEDHGTN 191
Query: 178 YSVKAVNTFGRAECRANLVL 197
+ + + + L
Sbjct: 192 LTCQMKRQGAQVTTERTVQL 211
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 41.2 bits (96), Expect = 6e-04
Identities = 40/258 (15%), Positives = 68/258 (26%), Gaps = 25/258 (9%)
Query: 18 SHQEQPALFTCKVEGH-PLP-TMTWQKDGTELHATEHYLITTVES-----VSTLEIINPT 70
H C V G+ P +TW +DG + TT E S L +
Sbjct: 21 GHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKH 80
Query: 71 KEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT 130
YTC+ T G + + G + ++P + +S T+ V
Sbjct: 81 WLSDRTYTCQVTY-QGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKS-PTITCLVV 138
Query: 131 G----RPTPSICWYRGKEEILPDNGHTME--FNPTTG-ECVLSISEATPQDEAVYSVKAV 183
+ T + W R + + + E N T L + + Y +
Sbjct: 139 DLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVT 198
Query: 184 NTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG--TPTP 241
+ + P V + TL
Sbjct: 199 HPHLPRALMRSTTKTSGPRA-APEV----YAFATPEWPG--SRDKRTLACLIQNFMPEDI 251
Query: 242 EVKWFKNGKEIVSKDIET 259
V+W N ++ T
Sbjct: 252 SVQWLHNEVQLPDARHST 269
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 38.2 bits (88), Expect = 9e-04
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 4/62 (6%)
Query: 26 FTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTK-EDIGVYTCKATNI 84
TC P + WQ + + E + L + ++ E G Y C
Sbjct: 26 LTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDE-DHLSLKEFSELEQSGYYVCYPRGS 82
Query: 85 GG 86
Sbjct: 83 KP 84
Score = 31.7 bits (71), Expect = 0.19
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 334 KPTPLVTWSHDGTPMKEGKEVTIYQDTDG-LCKLAISEVFPENAGLYSCTAVNPVGEA 390
P + W H+ + ++ + L SE+ E +G Y C E
Sbjct: 31 YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSEL--EQSGYYVCYPRGSKPED 86
Score = 29.0 bits (64), Expect = 1.4
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 238 TPTPEVKWFKNGKEIVSKDIETKDNVTK--LVIKQTTK-KTTGKYEIRVVNEAGEARTS 293
P E+ W N K I + + + L +K+ ++ + +G Y E
Sbjct: 31 YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANF 89
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 39.1 bits (91), Expect = 0.003
Identities = 30/190 (15%), Positives = 49/190 (25%), Gaps = 25/190 (13%)
Query: 208 VLEAPTI-VRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKL 266
+ P + P +VP+ VTL Y +K + +
Sbjct: 21 GQDKPFLSAWPSA--VVPRGGHVTLRCHYR-HRFNNFMLYKEDRIHIPIFHGRIFQE-SF 76
Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHS 326
+ T G Y R S T A + V++ V + H
Sbjct: 77 NMSPVTTAHAGNYTCR-------GSHPHSPTGWSAPSNPVVIMVTGNHRKPSLL---AHP 126
Query: 327 EPVVVTGKP----------TPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENA 376
P+V +G+ +G + V D +I + A
Sbjct: 127 GPLVKSGERVILQCWSDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALA 186
Query: 377 GLYSCTAVNP 386
G Y C
Sbjct: 187 GTYRCYGSVT 196
Score = 31.8 bits (72), Expect = 0.61
Identities = 20/192 (10%), Positives = 37/192 (19%), Gaps = 46/192 (23%)
Query: 325 HSEPV--VVTGKPTPLVTWSHDGTPMKEGKEVTI-----------------------YQD 359
+ G + + G VT+ +
Sbjct: 10 SDDDDKGSHMGGQDKPFLSAWPSAVVPRGGHVTLRCHYRHRFNNFMLYKEDRIHIPIFHG 69
Query: 360 TDGLCKLAISEVFPENAGLYSCTAVNPVGEAV-----AAATLAVEEKEESGEAPKFTKPL 414
+S V +AG Y+C +P + V KP
Sbjct: 70 RIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMV--------TGNHRKPS 121
Query: 415 KPVIAEAQSPATLKATVT-----GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSI 469
++A V ++ P + + + SI
Sbjct: 122 --LLAHPGPLVKSGERVILQCWSDIMFEHFFLHKEGISKDPSR-LVGQIHDGVSKANFSI 178
Query: 470 SEATPQDEAVYS 481
Y
Sbjct: 179 GPMMLALAGTYR 190
Score = 31.4 bits (71), Expect = 0.75
Identities = 21/170 (12%), Positives = 38/170 (22%), Gaps = 17/170 (10%)
Query: 15 PVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDI 74
VV + C H K+ H + + T
Sbjct: 33 AVVP-RGGHVTLRCHYR-HRFNNFMLYKEDRIHIPIFH----GRIFQESFNMSPVTTAHA 86
Query: 75 GVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT---- 130
G YTC+ ++ SA + +G K + ++A V
Sbjct: 87 GNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPS-----LLAHPGPLVKSGERVILQCW 141
Query: 131 -GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYS 179
++ P + + + SI Y
Sbjct: 142 SDIMFEHFFLHKEGISKDPSR-LVGQIHDGVSKANFSIGPMMLALAGTYR 190
Score = 29.5 bits (66), Expect = 3.1
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 314 SHPTASFQWFIHSEPV--VVTGKPTPLVTWSHDGTPMKEGKEVTI 356
S +Q S+P+ VVTG + G ++ G+ VT+
Sbjct: 194 SVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTL 238
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 39.1 bits (91), Expect = 0.003
Identities = 25/205 (12%), Positives = 55/205 (26%), Gaps = 15/205 (7%)
Query: 62 STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQS 121
++ I N T D G Y C G T + E + A Q
Sbjct: 74 FSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQH 133
Query: 122 PATLKATVTG-RPTP-SICWYRGKEEILPDNGHTMEFNPT---TGECVLSISEATPQDEA 176
+ G P ++ W++ E+ + + + + +
Sbjct: 134 TVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHS 193
Query: 177 VYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYT 236
+ + T + + P + Q + ++ V + +
Sbjct: 194 QVICEVAH-------VTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAEN-QVNVTCQVR 245
Query: 237 G-TPTP-EVKWFKNGKEIVSKDIET 259
P ++ W +NG ++ T
Sbjct: 246 KFYPQRLQLTWLENGNVSRTETAST 270
Score = 38.4 bits (89), Expect = 0.004
Identities = 54/297 (18%), Positives = 86/297 (28%), Gaps = 45/297 (15%)
Query: 123 ATLKATVTG-RPTPSICWYRGKEEILP-----DNGHTMEFNPTT-------GECVLSISE 169
A L TVT P I W+RG GH + + +SIS
Sbjct: 21 AILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISN 80
Query: 170 ATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTV 229
TP D Y F + T + AP + P TV
Sbjct: 81 ITPADAGTYYC---VKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARAT--PQHTV 135
Query: 230 TLEAEYTG-TPTP-EVKWFKNGKEI---VSKDIETKDNVT-----KLVIKQTTKKTTGKY 279
+ E G +P +KWFKNG E+ + ++V+ + T + +
Sbjct: 136 SFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQV 195
Query: 280 EIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVT-----GK 334
V + G A + + V VT
Sbjct: 196 ICEVAHVTL----QGDPLRGTANLSETIRVPPTLEVTQQPVR---AENQVNVTCQVRKFY 248
Query: 335 PTPL-VTWSHDGTPMKEGKEVTIYQDTDGL----CKLAISEVFPENAGLYSCTAVNP 386
P L +TW +G + T+ ++ DG L ++ + +C +
Sbjct: 249 PQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHD 305
Score = 30.3 bits (68), Expect = 1.9
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 21 EQPALFTCKVEG-HPLP-TMTWQKDGTELHATEHYLIT-----TVESVSTLEIINPTKED 73
E TC+V +P +TW ++G +T T +S L + D
Sbjct: 235 ENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRD 294
Query: 74 IGVYTCKATN 83
TC+ +
Sbjct: 295 DVKLTCQVEH 304
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 38.5 bits (89), Expect = 0.004
Identities = 28/180 (15%), Positives = 53/180 (29%), Gaps = 35/180 (19%)
Query: 114 PVIAEAQSPATLKATVTGRPTPS-----ICWYRGK----EEIL---PDNGHTMEFNP--- 158
I T+ + + I W+ +E+ H F P
Sbjct: 12 TQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAI 71
Query: 159 ------TTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAP 212
+G+ L + ++ Y C + KA + V+ +P
Sbjct: 72 VSPWRLKSGDASLRLPGIQLEEAGEYR-----------CEVVVTPLKAQGTVQLEVVASP 120
Query: 213 TIVRPLQALLVPKDSTVTLEAEYTG-TPTP-EVKWFKNGKEIVSKDIETKDNVTKLVIKQ 270
R L + K++ E +G P + W K ++ ++D +T IK
Sbjct: 121 A-SRLLLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKN 179
Score = 37.0 bits (85), Expect = 0.010
Identities = 32/188 (17%), Positives = 52/188 (27%), Gaps = 38/188 (20%)
Query: 366 LAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPA 425
L + + E AG Y C V +A L V P L V ++
Sbjct: 84 LRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVAS------PASRLLLDQV-GMKENED 136
Query: 426 TLKATVTG-RPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 483
+G P +I W + E V++ + ++V
Sbjct: 137 KYMCESSGFYPEAINITWEK--------QTQKFPHPIEISEDVIT-GPTIKNMDGTFNV- 186
Query: 484 ASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVA------GSVTCTATLSLLPESE 537
S L ++ D C + + + T TA L E+E
Sbjct: 187 -------------TSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTAARHSLSETE 233
Query: 538 VTDVMESP 545
TD +
Sbjct: 234 KTDNFSAA 241
Score = 30.8 bits (69), Expect = 1.1
Identities = 19/109 (17%), Positives = 34/109 (31%), Gaps = 16/109 (14%)
Query: 21 EQPALFTCKVEG-HPLP-TMTWQKDGTELHATEHYLITTVESV------------STLEI 66
E + C+ G +P +TW+K + + S L++
Sbjct: 133 ENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKL 192
Query: 67 INPTKEDIG-VYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKP 114
N ++ED G VY C + +N + S + T
Sbjct: 193 -NSSQEDPGTVYQCVVRHASLHTPLRSNFTLTAARHSLSETEKTDNFSA 240
Score = 28.5 bits (63), Expect = 5.9
Identities = 18/120 (15%), Positives = 34/120 (28%), Gaps = 18/120 (15%)
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
+L + E+ G Y C+ A + L V+ P L V ++
Sbjct: 83 SLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVAS------PASRLLLDQV-GMKENE 135
Query: 123 ATLKATVTG-RPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 180
+G P +I W + E V++ + ++V
Sbjct: 136 DKYMCESSGFYPEAINITWEK--------QTQKFPHPIEISEDVIT-GPTIKNMDGTFNV 186
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 36.4 bits (84), Expect = 0.005
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
++ + N DIG Y CK GVA +L+VL K
Sbjct: 90 SINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVK 126
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 36.7 bits (85), Expect = 0.013
Identities = 27/143 (18%), Positives = 42/143 (29%), Gaps = 27/143 (18%)
Query: 62 STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEA-Q 120
+L + T VY C + ++G + G A K + Q
Sbjct: 73 FSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQ 132
Query: 121 SP----------ATLKATVTGRPTPSICWYR---GKEEIL------------PDNGHTME 155
SP A L + WY+ G+ L T+
Sbjct: 133 SPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRF-TIF 191
Query: 156 FNPTTGECVLSISEATPQDEAVY 178
FN + L I+++ P D A Y
Sbjct: 192 FNKREKKLSLHIADSQPGDSATY 214
Score = 30.1 bits (68), Expect = 1.5
Identities = 29/177 (16%), Positives = 50/177 (28%), Gaps = 30/177 (16%)
Query: 333 GKPTPLVTWSHDGTPMKEG---KEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
G L+ +S+ ++G + + L + P +Y C + +
Sbjct: 39 GHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQTSVYFCASGDLGQT 98
Query: 390 AVAAATLAVEEKEESGEAPKFTKPLKPVIAEA-QSP----------ATLKATVTGRPTPS 438
+ G A K + QSP A L +
Sbjct: 99 NERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDY 158
Query: 439 ICWYR---GKEEIL------------PDNGHTMEFNPTTGECVLSISEATPQDEAVY 480
WY+ G+ L T+ FN + L I+++ P D A Y
Sbjct: 159 FPWYQQFPGEGPALLISILSVSDKKEDGRF-TIFFNKREKKLSLHIADSQPGDSATY 214
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 34.9 bits (80), Expect = 0.016
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 23/113 (20%)
Query: 115 VIAEAQSPATLKATVTGRPTP-SICWYRGK-------EEILPDNGH----------TMEF 156
V P TL T + + CW RG+ ++ NGH ++
Sbjct: 7 VKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKG 66
Query: 157 NPTTGECVLSISEATPQDEAVY--SVKAVNTFGRAECRANLVLRKATTIDKPR 207
+ + G+ L+I + D +Y V+ F + +L ++ PR
Sbjct: 67 HISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKPELV---PR 116
Score = 34.9 bits (80), Expect = 0.016
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 18/82 (21%)
Query: 417 VIAEAQSPATLKATVTGRPTP-SICWYRGK-------EEILPDNGH----------TMEF 458
V P TL T + + CW RG+ ++ NGH ++
Sbjct: 7 VKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKG 66
Query: 459 NPTTGECVLSISEATPQDEAVY 480
+ + G+ L+I + D +Y
Sbjct: 67 HISEGDVSLTIENSVESDSGLY 88
Score = 30.7 bits (69), Expect = 0.38
Identities = 19/107 (17%), Positives = 27/107 (25%), Gaps = 21/107 (19%)
Query: 14 QPVVSHQE-QPALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVESVST-------- 63
V P C + T W + A ++ LI T T
Sbjct: 4 YVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYN 63
Query: 64 -----------LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
L I N + D G+Y C+ G + K
Sbjct: 64 LKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVK 110
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 34.6 bits (79), Expect = 0.018
Identities = 18/107 (16%), Positives = 30/107 (28%), Gaps = 21/107 (19%)
Query: 115 VIAEAQSPATL--KATVTGRPTPSICWYRG-------KEEILPDNGH----------TME 155
V A P TL + +CW G ++ NG+ ++
Sbjct: 7 VQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLK 66
Query: 156 FNPTTGECVLSISEATPQDEAVY--SVKAVNTFGRAECRANLVLRKA 200
N + G L+I D Y V+ F + +
Sbjct: 67 GNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELV 113
Score = 34.6 bits (79), Expect = 0.022
Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 19/83 (22%)
Query: 417 VIAEAQSPATL--KATVTGRPTPSICWYRG-------KEEILPDNGH----------TME 457
V A P TL + +CW G ++ NG+ ++
Sbjct: 7 VQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLK 66
Query: 458 FNPTTGECVLSISEATPQDEAVY 480
N + G L+I D Y
Sbjct: 67 GNISEGNVSLTIENTVVGDGGPY 89
Score = 28.8 bits (64), Expect = 1.8
Identities = 19/105 (18%), Positives = 23/105 (21%), Gaps = 22/105 (20%)
Query: 14 QPVVSHQE-QPALFTCK--VEGHPLPTMTWQKDGT-------ELHATEHYLITTVESVS- 62
V P C + M W L T Y +T +
Sbjct: 4 HTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRY 63
Query: 63 -----------TLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
+L I N D G Y C G L V
Sbjct: 64 QLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEV 108
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 34.5 bits (79), Expect = 0.018
Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 130 TGRPTPSICWYRGKEEILPDNG-HTMEFNPTTGECVLSISEATPQDEAVY 178
+ T + + + + ++ + G+ L I T D Y
Sbjct: 38 WSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDDHGTY 87
Score = 34.5 bits (79), Expect = 0.018
Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 432 TGRPTPSICWYRGKEEILPDNG-HTMEFNPTTGECVLSISEATPQDEAVY 480
+ T + + + + ++ + G+ L I T D Y
Sbjct: 38 WSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDDHGTY 87
Score = 27.2 bits (60), Expect = 5.8
Identities = 19/95 (20%), Positives = 25/95 (26%), Gaps = 22/95 (23%)
Query: 13 IQPVVSHQEQPALFTCKVEGHP---LPTMTWQKDGTELHATEHYLITTVESVST------ 63
+ + A C L M W K + L+ T E T
Sbjct: 1 MDGYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSR 60
Query: 64 -------------LEIINPTKEDIGVYTCKATNIG 85
L I N T +D G Y C+ G
Sbjct: 61 YQLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPG 95
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.025
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 98 EKEESGEAPKFTKPLKPVIAEAQSPA-TLKATV 129
EK+ K LK A+ +PA +KAT+
Sbjct: 18 EKQA---LKKLQASLKLY-ADDSAPALAIKATM 46
Score = 34.9 bits (79), Expect = 0.025
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 400 EKEESGEAPKFTKPLKPVIAEAQSPA-TLKATV 431
EK+ K LK A+ +PA +KAT+
Sbjct: 18 EKQA---LKKLQASLKLY-ADDSAPALAIKATM 46
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick
filament, immune system, cell adhesion; NMR {Mus
musculus}
Length = 142
Score = 34.6 bits (79), Expect = 0.026
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 133 PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECR 192
+ + ++EI + M + TG + + + +DE Y+ + + G+A
Sbjct: 66 SNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQIQD--GKATGH 123
Query: 193 ANLVL 197
+ LVL
Sbjct: 124 STLVL 128
Score = 32.7 bits (74), Expect = 0.11
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 34 PLPTMTWQKDGTELHATEHYLITTVESVSTLEII--NPTKEDIGVYTCKATNIGGVATCS 91
+++ + E+ Y + + +E+ ED G YT + + +
Sbjct: 66 SNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQIQDGKATGHST 125
Query: 92 ANLI 95
LI
Sbjct: 126 LVLI 129
Score = 28.4 bits (63), Expect = 3.4
Identities = 8/50 (16%), Positives = 20/50 (40%)
Query: 435 PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 484
+ + ++EI + M + TG + + + +DE Y+ +
Sbjct: 66 SNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQI 115
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 35.5 bits (81), Expect = 0.026
Identities = 34/188 (18%), Positives = 53/188 (28%), Gaps = 31/188 (16%)
Query: 14 QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKED 73
V+ + L TC + + T L E L+ + E+ N +
Sbjct: 7 SKVILPRGGSVLVTCSTSCDQPKLLGIE---TPLPKKE--LLLPGNNRKVYELSNVQ--E 59
Query: 74 IGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-- 131
C + G +T L V E E P TL+ V G
Sbjct: 60 DSQPMCYSNCPDGQSTAKTFLTVYWTPERVELA-----PLPSWQPVGKQLTLRCQVEGGA 114
Query: 132 -RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAE 190
R ++ RG++E+ E ++ A +S
Sbjct: 115 PRAQLTVVLLRGEKEL-----KREPAVGEPAEVTTTVLVRRDHHGAQFS----------- 158
Query: 191 CRANLVLR 198
CR L LR
Sbjct: 159 CRTELDLR 166
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 35.2 bits (81), Expect = 0.029
Identities = 39/191 (20%), Positives = 65/191 (34%), Gaps = 31/191 (16%)
Query: 208 VLEAPTI-VRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGK--EIVSKDIETKDNVT 264
L PT+ P ++ + S VTL + T E + ++ K +++ +
Sbjct: 2 HLPKPTLWAEPGS--VITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKG 58
Query: 265 KLVIKQTTKKTTGKYE-IRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWF 323
+ I T + TG+Y + AG + +S + + V A PT S
Sbjct: 59 QFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYI---------KPTLS---- 105
Query: 324 IHSEPVVVTGKPTPLVTWSHDGTPM----KEGKEVTI-----YQDTDGLCK--LAISEVF 372
PVV +G L S KEG++ G + ++ V
Sbjct: 106 AQPSPVVNSGGNVTLQCDSQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVS 165
Query: 373 PENAGLYSCTA 383
P Y C A
Sbjct: 166 PSRRWWYRCYA 176
Score = 29.8 bits (67), Expect = 1.5
Identities = 24/173 (13%), Positives = 43/173 (24%), Gaps = 26/173 (15%)
Query: 325 HSEPVVVTGKP----------TPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPE 374
V+ G P T + I Q+ + I + E
Sbjct: 11 EPGSVITQGSPVTLRCQGGQETQEYRLYREKKTAPWITR--IPQELVKKGQFPIPSITWE 68
Query: 375 NAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPA-TLKATVT- 432
+ G Y C + E + E +KP ++ SP VT
Sbjct: 69 HTGRYRCYYGSDTAG--------RSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTL 120
Query: 433 ----GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYS 481
+ E+ P ++ + + S+ +P Y
Sbjct: 121 QCDSQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYR 173
Score = 27.9 bits (62), Expect = 7.4
Identities = 25/172 (14%), Positives = 48/172 (27%), Gaps = 19/172 (11%)
Query: 15 PVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDI 74
V++ Q P C+ ++ + + + I + T E
Sbjct: 14 SVIT-QGSPVTLRCQGG-QETQEYRLYREK-KTAPWITRIPQELVKKGQFPIPSITWEHT 70
Query: 75 GVYTCKA-TNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPA-TLKATVT-- 130
G Y C ++ G + S L E +KP ++ SP VT
Sbjct: 71 GRYRCYYGSDTAGRSESSDPL---------ELVVTGAYIKPTLSAQPSPVVNSGGNVTLQ 121
Query: 131 ---GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYS 179
+ E+ P ++ + + S+ +P Y
Sbjct: 122 CDSQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYR 173
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 33.3 bits (76), Expect = 0.050
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 63 TLEIINPTKEDIGVYTCK-ATNIGGVATCSANLIVLEK 99
+L + ED G YTC T G + L VL K
Sbjct: 80 SLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK 117
Score = 27.1 bits (60), Expect = 8.6
Identities = 6/40 (15%), Positives = 9/40 (22%), Gaps = 1/40 (2%)
Query: 148 PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFG 187
L + +DE Y+ TF
Sbjct: 64 RLEFVAARLGAELRNASLRMFGLRVEDEGNYTCL-FVTFP 102
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 33.0 bits (75), Expect = 0.066
Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 19/83 (22%)
Query: 115 VIAEAQSPATL--KATVTGRPTPSICWYRG-------KEEILPDNGHTMEF--------- 156
+I P TL + S+CW +G E+L +G +
Sbjct: 6 IIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLL 65
Query: 157 -NPTTGECVLSISEATPQDEAVY 178
GE L+IS D VY
Sbjct: 66 GKVQFGEVSLTISNTNRGDSGVY 88
Score = 33.0 bits (75), Expect = 0.066
Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 19/83 (22%)
Query: 417 VIAEAQSPATL--KATVTGRPTPSICWYRG-------KEEILPDNGHTMEF--------- 458
+I P TL + S+CW +G E+L +G +
Sbjct: 6 IIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLL 65
Query: 459 -NPTTGECVLSISEATPQDEAVY 480
GE L+IS D VY
Sbjct: 66 GKVQFGEVSLTISNTNRGDSGVY 88
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 34.4 bits (79), Expect = 0.072
Identities = 33/216 (15%), Positives = 57/216 (26%), Gaps = 51/216 (23%)
Query: 14 QPVVSHQE-QPALFTCKVEGHPLPTMTW--QKDGTEL-----------------HATEHY 53
V Q A TC + + W ++G +
Sbjct: 9 TKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGK 68
Query: 54 LITTVESVST--LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKP 111
T + + + N + D GVY C + + L + + K
Sbjct: 69 YDTYGSTRKNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKK 128
Query: 112 LKPVIAEA----QSPATLKATV-----------TGRPTPSICWYR---GKEEIL------ 147
A Q+ +++ V T + I WY+ KE I
Sbjct: 129 DAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGS 188
Query: 148 -----PDNGHTMEFNPTTGECVLSISEATPQDEAVY 178
+++ F L+IS +D A Y
Sbjct: 189 DEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKY 224
Score = 32.1 bits (73), Expect = 0.43
Identities = 30/219 (13%), Positives = 65/219 (29%), Gaps = 40/219 (18%)
Query: 297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGT------PMKE 350
++ + + + T W++H E GK + + T
Sbjct: 11 SVIRQTGSSAEITCDLAEGSTGYIHWYLHQE-----GKAPQRLLYYDSYTSSVVLESGIS 65
Query: 351 GKEVTIYQDTDGLCKLAISEVFPENAGLYSC----TAVNPVGEAVAAATLAVEEKEESGE 406
+ Y T ++ + + ++G+Y C + + +++ + +
Sbjct: 66 PGKYDTYGSTRKNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADD 125
Query: 407 APKFTKPLKPVIAEAQSPATLKATV-----------TGRPTPSICWYR---GKEEIL--- 449
A K Q+ +++ V T + I WY+ KE I
Sbjct: 126 AKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIR 185
Query: 450 --------PDNGHTMEFNPTTGECVLSISEATPQDEAVY 480
+++ F L+IS +D A Y
Sbjct: 186 QGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKY 224
Score = 27.9 bits (62), Expect = 8.7
Identities = 34/224 (15%), Positives = 62/224 (27%), Gaps = 51/224 (22%)
Query: 115 VIAEAQSPATLKATVTGRPTPSICWYR---GKE-----EILPDNGH-----------TME 155
+ S A + + T I WY GK
Sbjct: 13 IRQTGSS-AEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDT 71
Query: 156 FNPTTGECVLSISEATPQDEAVY--------SVKAVNTFGRAEC-RANLVLRKATTIDKP 206
+ T + + D VY K + G + D
Sbjct: 72 YGSTRKNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAA 131
Query: 207 RVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPT-PEVKWFK--NGKEIVSKDIETKDNV 263
+ A + + ++ +P VTL Y + + W+K KE+
Sbjct: 132 KKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEM----------- 180
Query: 264 TKLVIKQTTKKTT---GKYEIRVVNEAGEARTSGSVTITVAEAE 304
+I+Q + + G+Y + A S ++TI+ + E
Sbjct: 181 -IFLIRQGSDEQNAKSGRYSVNFKK----AAKSVALTISALQLE 219
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 33.0 bits (75), Expect = 0.076
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVATCSA--NLIVLEKEES 102
++ I N D G +TC N + ++ L V EK +
Sbjct: 82 SIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVPT 123
Score = 26.9 bits (59), Expect = 9.7
Identities = 13/114 (11%), Positives = 23/114 (20%), Gaps = 24/114 (21%)
Query: 109 TKPLKPVIAEAQSPATLKATVTGRPTP----SICWYRGKE-------EILPDNGH----- 152
+ V S TL + S W E G
Sbjct: 3 VYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDE 62
Query: 153 --------TMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198
+P+ + + I D ++ N + + L
Sbjct: 63 VGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLY 116
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 34.5 bits (78), Expect = 0.079
Identities = 25/185 (13%), Positives = 47/185 (25%), Gaps = 21/185 (11%)
Query: 219 QALLVPKDSTVTL-----EAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQ 270
A +V +T + P P++ W + + + + +
Sbjct: 8 SAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPH 67
Query: 271 TTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTAS---FQWFIHSE 327
+N + V + + ++ + T S QW E
Sbjct: 68 LNHTQAFLS--CSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPE 125
Query: 328 PVVVTGKPTPLVTWSHD--GTPMKEGKEVTIYQDTDGL--CKLAISEVFPENAGLYSCTA 383
T PT S G +G + DG C + + A
Sbjct: 126 ----THLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQA 181
Query: 384 VNPVG 388
N +G
Sbjct: 182 ENALG 186
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 32.3 bits (74), Expect = 0.10
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 8/64 (12%)
Query: 123 ATLKATVTGRPTPS--ICWYR-----GKEEILPDNGH-TMEFNPTTGECVLSISEATPQD 174
T+ + CWYR G EE + G N + L I++ T +D
Sbjct: 18 LTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVED 77
Query: 175 EAVY 178
Y
Sbjct: 78 GGTY 81
Score = 32.3 bits (74), Expect = 0.10
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 8/64 (12%)
Query: 425 ATLKATVTGRPTPS--ICWYR-----GKEEILPDNGH-TMEFNPTTGECVLSISEATPQD 476
T+ + CWYR G EE + G N + L I++ T +D
Sbjct: 18 LTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVED 77
Query: 477 EAVY 480
Y
Sbjct: 78 GGTY 81
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 33.9 bits (77), Expect = 0.12
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 27 TCKVEGHPLPT---MTWQK-DGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82
CK G PLPT MT K DGT LH + SV+ I D GV+ C
Sbjct: 347 ICKASGWPLPTNEEMTLVKPDGTVLHPKDFNHTDH-FSVAIFTIHRILPPDSGVWVCSVN 405
Query: 83 NIGGVATCSANLIV 96
+ G+ N+ V
Sbjct: 406 TVAGMVEKPFNISV 419
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 34.2 bits (77), Expect = 0.13
Identities = 41/320 (12%), Positives = 76/320 (23%), Gaps = 44/320 (13%)
Query: 71 KEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLK---- 126
E GV C + G L P + +K
Sbjct: 132 NECSGVKKCCSNGCGHTCQVPKTLYK-------GVPLKPRKELRFTELQSGQLEVKWSSK 184
Query: 127 ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLS--ISEATPQDEAVYSVKAVN 184
++ P + R I P + +++ P + V AVN
Sbjct: 185 FNISIEPVIYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVN 244
Query: 185 TFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQA-LLVPKDSTVTL---EAEYTGTP- 239
G A + P AP +R + + TVT+ E P
Sbjct: 245 VHGTRGFTAPSKHF--RSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPV 302
Query: 240 -------TPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRV--VNEAGEA 290
+ V + T +++++ Y + + + G+
Sbjct: 303 HHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCD--YVVELQAITYWGQT 360
Query: 291 R-TSGSVTITVAEAETV------------MMDVRVESHPTASFQWFIHSEPVVVTGKPTP 337
R S V++ + ++ + P G+
Sbjct: 361 RLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQV 420
Query: 338 LVTWSHDGTPMKEGKEVTIY 357
V W P V +
Sbjct: 421 KVYWKKTEDPTVNRYHVRWF 440
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 32.9 bits (75), Expect = 0.21
Identities = 24/175 (13%), Positives = 46/175 (26%), Gaps = 34/175 (19%)
Query: 325 HSEPVVVTGKPTPLVT---------------WSHDGTPMKEGKEVTIYQDTDGLCKLAIS 369
S PV+ V + T + G+ + + +TD + I
Sbjct: 15 KSSPVIPLDGS---VKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDP--EFVID 69
Query: 370 EVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKA 429
+ AG Y C + TL + P + V+ ++ +L
Sbjct: 70 HMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLY-GKPFLSADRGLVLMPGEN-ISLTC 127
Query: 430 TVTGRPTPSICWYR-GKEEIL--PDNGHTMEFNPTTGECVLSISEATPQDEAVYS 481
+ P + G+ + H F S+ +Y
Sbjct: 128 SSAHIPFDRFSLAKEGELSLPQHQSGEHPANF---------SLGPVDLNVSGIYR 173
Score = 31.8 bits (72), Expect = 0.47
Identities = 22/169 (13%), Positives = 43/169 (25%), Gaps = 17/169 (10%)
Query: 15 PVVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKED 73
PV+ + C+ L + K+ T E+ I +
Sbjct: 18 PVIP-LDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWN-ETDPEFVIDHMDANK 75
Query: 74 IGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP 133
G Y C+ S L ++ P + V+ ++ +L + P
Sbjct: 76 AGRYQCQYRIGHYRFRYSDTLELVVTGLY-GKPFLSADRGLVLMPGEN-ISLTCSSAHIP 133
Query: 134 TPSICWYR-GKEEIL--PDNGHTMEFNPTTGECVLSISEATPQDEAVYS 179
+ G+ + H F S+ +Y
Sbjct: 134 FDRFSLAKEGELSLPQHQSGEHPANF---------SLGPVDLNVSGIYR 173
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 31.4 bits (71), Expect = 0.22
Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 15/100 (15%)
Query: 105 APKFTKPLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEE-ILPDNGHTM-------- 154
L + + S TL + + + W+ ++ I+ +
Sbjct: 4 GSSGQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFK 63
Query: 155 ---EFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAEC 191
+P +G L IS+ +D + Y ++ + G +
Sbjct: 64 GRVRLDPQSG--ALYISKVQKEDNSTYIMRVLKKTGNEQE 101
Score = 31.4 bits (71), Expect = 0.28
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 17/92 (18%)
Query: 227 STVTLEAEYTGT-PTPEVKWFKNGKE-IVSKDIETKDNVTK--------------LVIKQ 270
S VTL + ++ WF + IV D L I +
Sbjct: 20 SNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISK 79
Query: 271 TTKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
K+ Y +RV+ + G + + + V +
Sbjct: 80 VQKEDNSTYIMRVLKKTGNEQE-WKIKLQVLD 110
Score = 30.7 bits (69), Expect = 0.48
Identities = 17/104 (16%), Positives = 31/104 (29%), Gaps = 9/104 (8%)
Query: 287 AGEARTSGSVTITVAEAETVMMDVRV-ESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDG 345
+G + V +TV V +++ WF + +V +
Sbjct: 3 SGSSGQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFE--- 59
Query: 346 TPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
+G+ Q L IS+V E+ Y + G
Sbjct: 60 -SKFKGRVRLDPQSGA----LYISKVQKEDNSTYIMRVLKKTGN 98
Score = 30.7 bits (69), Expect = 0.54
Identities = 13/87 (14%), Positives = 19/87 (21%), Gaps = 13/87 (14%)
Query: 25 LFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS------------TLEIINPTKE 72
L + +TW + + L I KE
Sbjct: 24 LNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKE 83
Query: 73 DIGVYTCKATNI-GGVATCSANLIVLE 98
D Y + G L VL+
Sbjct: 84 DNSTYIMRVLKKTGNEQEWKIKLQVLD 110
Score = 29.9 bits (67), Expect = 0.99
Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 15/100 (15%)
Query: 407 APKFTKPLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEE-ILPDNGHTM-------- 456
L + + S TL + + + W+ ++ I+ +
Sbjct: 4 GSSGQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFK 63
Query: 457 ---EFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT 493
+P +G L IS+ +D + Y ++
Sbjct: 64 GRVRLDPQSG--ALYISKVQKEDNSTYIMRVLKKTGNEQE 101
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 33.3 bits (76), Expect = 0.24
Identities = 23/134 (17%), Positives = 45/134 (33%), Gaps = 15/134 (11%)
Query: 26 FTCKVEG--HPLPTM--TWQKDGTELHATEHYLI-----TTVESVSTLEIINPTKEDIGV 76
TC V P + +W D E+H + +T VS L I++ +
Sbjct: 250 VTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKE 309
Query: 77 YTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAE-AQSPATLKATVTGR-PT 134
+ C+ + A + + AP+ + P + A+ +L +T P
Sbjct: 310 FKCRVNSAAFPAPIEKTISK--TKGKPRAPQVY-TIPPPKEQMAKDKVSLTCMITDFFPE 366
Query: 135 P-SICWYRGKEEIL 147
++ W +
Sbjct: 367 DITVEWQSDGQAPE 380
Score = 32.6 bits (74), Expect = 0.39
Identities = 63/369 (17%), Positives = 113/369 (30%), Gaps = 53/369 (14%)
Query: 55 ITTVESVST--LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPL 112
+T S +T + + + T +D VY C G V V P
Sbjct: 69 LTRDRSSNTANIHLSSLTSDDSAVYYC--VREGEVPYWGQGTTVTVSSAKTTPPSVYPLA 126
Query: 113 KPVIAEAQSPATLKATVTG-RPTP-SICWYRGKEEILPDNGHTMEFNPT-------TGEC 163
A+ S TL V G P P ++ W G + P T
Sbjct: 127 PGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL------SSGVHTFPAVLQSDLYTLSS 180
Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLV 223
+++ + E V A + + + + KP + P +
Sbjct: 181 SVTVPSSPRPSETVTCNVA---HPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPK 237
Query: 224 PKD-----STVTLEAEYTG-TPTP---EVKWFKNGKEI---VSKDIETKDNVT-----KL 266
PKD T + + + WF + E+ ++ E + N T L
Sbjct: 238 PKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSAL 297
Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHS 326
I +++ RV + TI+ + + +V + P +
Sbjct: 298 PIMHQDWLNGKEFKCRVNS--AAFPAPIEKTISKTKGKPR--APQVYTIPP-PKEQMAKD 352
Query: 327 EPVV---VTG-KPTPL-VTWSHDGTPMKEGKEVTIYQDTDGL----CKLAISEVFPENAG 377
+ + +T P + V W DG + K DTDG KL + + E
Sbjct: 353 KVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGN 412
Query: 378 LYSCTAVNP 386
++C+ ++
Sbjct: 413 TFTCSVLHE 421
>1a6z_A HFE; HFE, hereditary hemochromatosis, MHC class I, MHC class I
complex; 2.60A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1
PDB: 1de4_A*
Length = 275
Score = 32.6 bits (75), Expect = 0.25
Identities = 12/53 (22%), Positives = 15/53 (28%), Gaps = 16/53 (30%)
Query: 37 TMTWQKDGTELHATEHYLITTVESVSTL----------EIINPTKEDIGVYTC 79
TM W KD + A E E L + + YTC
Sbjct: 214 TMKWLKDKQPMDAKE------FEPKDVLPNGDGTYQGWITLAVPPGEEQRYTC 260
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 32.7 bits (74), Expect = 0.25
Identities = 34/188 (18%), Positives = 58/188 (30%), Gaps = 33/188 (17%)
Query: 120 QSPATL------KATVTGRPTPS---ICWYR--------------GKEEILPDNGHTMEF 156
Q+P L KA + P + WY+ +E + + F
Sbjct: 32 QTPRYLVKGQGQKAKMRCIPEKGHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRF 91
Query: 157 N---PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLE-AP 212
+ P+ C L I + D A+Y + + + R D V
Sbjct: 92 SAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEV 151
Query: 213 TIVRPLQALLVPKDS-TVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQT 271
+ P +A + T+ A E+ W+ NGKE V + T +K+
Sbjct: 152 AVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE-VHSGVCT----DPQPLKEQ 206
Query: 272 TKKTTGKY 279
+Y
Sbjct: 207 PALNDSRY 214
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 33.0 bits (75), Expect = 0.27
Identities = 24/138 (17%), Positives = 38/138 (27%), Gaps = 15/138 (10%)
Query: 22 QPALFTCKVEGHPLP----TMTWQKDGTELHATEHYLITTVES-----VSTLEIINPTKE 72
+ TC V ++W + E+H + + VS L I +
Sbjct: 256 LSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWM 315
Query: 73 DIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAE-AQSPATLKATVTG 131
+ CK N A + K + L P E + TL VT
Sbjct: 316 SGKEFKCKVNNKDLPAPIERTIS---KPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTD 372
Query: 132 RPTP--SICWYRGKEEIL 147
+ W + L
Sbjct: 373 FMPEDIYVEWTNNGKTEL 390
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 31.4 bits (71), Expect = 0.27
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 15/58 (25%)
Query: 136 SICWYR---GKEEILPDNGHTME------------FNPTTGECVLSISEATPQDEAVY 178
+ WY GK +++ +G N C L + + P+D Y
Sbjct: 37 TAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTY 94
Score = 31.4 bits (71), Expect = 0.27
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 15/58 (25%)
Query: 438 SICWYR---GKEEILPDNGHTME------------FNPTTGECVLSISEATPQDEAVY 480
+ WY GK +++ +G N C L + + P+D Y
Sbjct: 37 TAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTY 94
Score = 27.1 bits (60), Expect = 7.7
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 63 TLEIINPTKEDIGVYTCKATNIGG 86
L + + ED G Y +
Sbjct: 80 NLLLKDLKPEDSGTYNFRFEISDS 103
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 33.0 bits (75), Expect = 0.27
Identities = 38/267 (14%), Positives = 68/267 (25%), Gaps = 32/267 (11%)
Query: 37 TMTWQKDGTELHATEHYLITTVES-----VSTLEIINPTKEDIGVYTCKATNIGGVA--- 88
++TW + G + A S L + TC + +
Sbjct: 160 SVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDV 219
Query: 89 -----------TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG---RPT 134
T S + S A L T+TG
Sbjct: 220 TVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASG 279
Query: 135 PSICWYRGKEEILPDNGHTMEFNPTTGEC-VLSISEATPQDEAVYSVKAVNTFGRAECRA 193
+ W + + VL ++ A + ++
Sbjct: 280 VTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTA--AYPESKTPL 337
Query: 194 NLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTP-EVKWFKNGKE 251
L K+ +P V + P + L + VTL G +P V+W + +E
Sbjct: 338 TATLSKSGNTFRPEV---HLLPPPSEELA--LNELVTLTCLARGFSPKDVLVRWLQGSQE 392
Query: 252 IVSKDIETKDNVTKLVIKQTTKKTTGK 278
+ + T + + TT T
Sbjct: 393 LPREKYLTWASRQEPSQGTTTFAVTSI 419
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 31.9 bits (72), Expect = 0.41
Identities = 27/177 (15%), Positives = 55/177 (31%), Gaps = 20/177 (11%)
Query: 417 VIAEAQSPATLKATVTGRPTPSICWYR--------------GKEEILPDNGHTMEFNPTT 462
+I E ++ TL+ T P ++ WY+ E + +T + T
Sbjct: 14 IILEGKN-CTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADT 72
Query: 463 GECVLSISEATPQDEAVY--SVKASSTETKIMTDGNRS-VLLISKITRDQIGDVTCRAEN 519
+ L I+ + D A Y V + + G + + + I R
Sbjct: 73 KQSSLHITASQLSDSASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQNPDPAVYQLRDSK 132
Query: 520 VAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEI 576
+ C T ++ V+ + T + M + V +S + +
Sbjct: 133 SSDKSVCLFT-DFDSQTNVS-QSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDF 187
Score = 30.8 bits (69), Expect = 0.88
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 15/78 (19%)
Query: 115 VIAEAQSPATLKATVTGRPTPSICWYR--------------GKEEILPDNGHTMEFNPTT 160
+I E ++ TL+ T P ++ WY+ E + +T + T
Sbjct: 14 IILEGKN-CTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADT 72
Query: 161 GECVLSISEATPQDEAVY 178
+ L I+ + D A Y
Sbjct: 73 KQSSLHITASQLSDSASY 90
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 32.2 bits (73), Expect = 0.44
Identities = 28/135 (20%), Positives = 47/135 (34%), Gaps = 15/135 (11%)
Query: 26 FTCKVEG--HPLPTM--TWQKDGTELHATEHYLI-----TTVESVSTLEIINPTKEDIGV 76
TC V H P + W DG E+H + +T VS L +++ +
Sbjct: 269 VTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKE 328
Query: 77 YTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAE-AQSPATLKATVTGR-PT 134
Y CK +N A + + P+ L P E ++ +L V G P+
Sbjct: 329 YKCKVSNKALPAPIEKTISK--AKGQPREPQ-VYTLPPSRDELTKNQVSLTCLVKGFYPS 385
Query: 135 P-SICWYRGKEEILP 148
++ W +
Sbjct: 386 DIAVEWESNGQPENN 400
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 32.3 bits (72), Expect = 0.49
Identities = 16/122 (13%), Positives = 36/122 (29%), Gaps = 13/122 (10%)
Query: 157 NPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVR 216
P TG + P E Y + + + L P+V +++
Sbjct: 248 GPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLEL-----AVYKPPKV----SLMP 298
Query: 217 PLQALLVPKDSTVTLEAEYTG---TPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTK 273
A P ++ L + + EV+W G + + + ++ +
Sbjct: 299 ATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGP-GGRSQKAEGQRWLSALRHHSD 357
Query: 274 KT 275
+
Sbjct: 358 GS 359
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 31.8 bits (72), Expect = 0.51
Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 4/104 (3%)
Query: 165 LSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTI-VRPLQALLV 223
L + ATP +VY + G + + T ++ R + P + + +
Sbjct: 74 LILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEI 133
Query: 224 PKDSTVTLEAEYTG-TPTP-EVKWFKNGKEIVSKDIETKDNVTK 265
TL G P E+ W+ NGKE V + T K
Sbjct: 134 ANKQKATLVCLARGFFPDHVELSWWVNGKE-VHSGVSTDPQAYK 176
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 31.6 bits (70), Expect = 0.56
Identities = 24/124 (19%), Positives = 39/124 (31%), Gaps = 18/124 (14%)
Query: 22 QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81
+ + TC + +TW D + S TL I D G YTC
Sbjct: 22 EMVVLTC--DTPEEDGITWTLDQSSEVL---------GSGKTLTIQVKEFGDAGQYTCHK 70
Query: 82 TNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYR 141
GG + L++ +KE+ + K K ++ L+ CW+
Sbjct: 71 ---GGEVLSHSLLLLHKKEDGIWSTDILKDQKE----PKNKTFLRCEAKNYSGRFTCWWL 123
Query: 142 GKEE 145
Sbjct: 124 TTIS 127
Score = 28.2 bits (61), Expect = 7.4
Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 19/123 (15%)
Query: 327 EPVVVT--GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAV 384
E VV+T +TW+ D + G T L I +AG Y+C
Sbjct: 22 EMVVLTCDTPEEDGITWTLDQSSEVLGSGKT----------LTIQVKEFGDAGQYTCHK- 70
Query: 385 NPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRG 444
GE ++ + L + +KE+ + K K ++ L+ CW+
Sbjct: 71 --GGEVLSHSLLLLHKKEDGIWSTDILKDQKE----PKNKTFLRCEAKNYSGRFTCWWLT 124
Query: 445 KEE 447
Sbjct: 125 TIS 127
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 31.5 bits (71), Expect = 0.56
Identities = 26/125 (20%), Positives = 38/125 (30%), Gaps = 9/125 (7%)
Query: 158 PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLE-APTIVR 216
P L I +D AVY + AE R D V +
Sbjct: 71 PDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFE 130
Query: 217 PLQALLVPKDST--VTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKK 274
P +A + V L + E+ W+ NGKE V + T +K+
Sbjct: 131 PSEAEISHTQKATLVCLATGFYPDHV-ELSWWVNGKE-VHSGVCT----DPQPLKEQPAL 184
Query: 275 TTGKY 279
+Y
Sbjct: 185 NDSRY 189
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC I,
secreted, immune system; 2.10A {Ctenopharyngodon idella}
Length = 97
Score = 30.0 bits (68), Expect = 0.58
Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 339 VTWSHDGTPMKEGKEVTIYQDTDGL-CKLAISEVFPENAGLYSCT 382
+ +G + + ++ + + PE + YSC+
Sbjct: 37 IELLKNGEVIADAQQTDLAFEKGWQFHLTKSVSFKPEKSDEYSCS 81
>3d2u_A UL18 protein; MHC class I homolog, disease mutation, glycation,
glycoprote immune response, immunoglobulin domain, MHC
I, pyrrolidone carboxylic acid; HET: NAG MAN BMA FUC;
2.21A {Human herpesvirus 5}
Length = 281
Score = 31.6 bits (72), Expect = 0.60
Identities = 3/23 (13%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 37 TMTWQKDGTELHA-TEHYLITTV 58
+T+ G ++ +E +
Sbjct: 220 QITFIHYGDKVPEDSEPQCNPLL 242
>1a64_A CD2; domain swapping, hinge loop, oligomer evolution; 2.00A {Rattus
norvegicus} SCOP: b.1.1.1 PDB: 1a7b_A 1cdc_B 1a6p_A
1t6w_A
Length = 97
Score = 30.0 bits (67), Expect = 0.62
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 10/70 (14%)
Query: 242 EVKW---------FKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART 292
EV+W FK + S E N L IK T+ +G Y + V + G
Sbjct: 29 EVRWERGSTLVAEFKRKPFLKSGAFEILANGD-LKIKNLTRDDSGTYNVTVYSTNGTRIL 87
Query: 293 SGSVTITVAE 302
++ + + E
Sbjct: 88 DKALDLRILE 97
>3c5j_A HLA class II histocompatibility antigen, DR alpha; HLA, MHC class
II, glycoprotein, immune response, membrane,
transmembrane, GTP-binding, methylation; HET: NAG; 1.80A
{Homo sapiens} PDB: 1d5x_A* 1d5z_A* 1d6e_A* 1d5m_A
1fyt_A* 1hqr_A 1j8h_A* 1r5i_A 1seb_A 1zgl_A 2seb_A*
1fv1_A* 2ipk_A* 3pdo_A 3pgc_A 3pgd_A 1ymm_A* 1aqd_A
2g9h_A* 1h15_A ...
Length = 181
Score = 31.2 bits (71), Expect = 0.63
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 29/84 (34%)
Query: 16 VVSHQ----EQPALFTCKVEG-HPLP-TMTWQKDGTELHATEHYLITTVESV-------- 61
V+++ +P + C ++ P +TW ++G + T V
Sbjct: 91 VLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPV--TTG-----VSETVFLPREDH 143
Query: 62 -----STLEIINPTKEDIGVYTCK 80
L + P+ ED VY C+
Sbjct: 144 LFRKFHYLPFL-PSTED--VYDCR 164
Score = 29.3 bits (66), Expect = 2.5
Identities = 13/46 (28%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 339 VTWSHDGTPMKEGKEVT-IYQDTDGL-CKLAISEVFPENAGLYSCT 382
VTW +G P+ G T D L K P +Y C
Sbjct: 119 VTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCR 164
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 31.5 bits (71), Expect = 0.64
Identities = 21/163 (12%), Positives = 48/163 (29%), Gaps = 11/163 (6%)
Query: 123 ATLKATVTGRPTPS---ICWYRGKEEILPDNGHTME--FNPT-TGECVLSISEATPQDEA 176
A L+ V P+ S + W R K L + ++ FN T + + +S
Sbjct: 31 AKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGE 90
Query: 177 VYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYT 236
++ + E + + P P L T++
Sbjct: 91 RFTCTVQH-----EELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGF 145
Query: 237 GTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKY 279
E++W ++ + + + + T + + +
Sbjct: 146 RPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGGDGDTF 188
>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain,
histocompatibi antigen, MHC class I molecule from B21
chicken, immune SYST; 2.00A {Gallus gallus}
Length = 119
Score = 30.1 bits (68), Expect = 0.75
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 16/69 (23%)
Query: 22 QPALFTCKVEG-HPLP-TMTWQKDGTELHATEHYLITTVES--------VSTLEIINPTK 71
+ C G HP ++T KDG + ++ + + + + P+
Sbjct: 39 TKNVLNCFAAGFHPPKISITLMKDGVPMEGAQY---SDMSFNDDWTFQRLVHADFT-PSS 94
Query: 72 EDIGVYTCK 80
Y CK
Sbjct: 95 GS--TYACK 101
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 30.2 bits (67), Expect = 0.89
Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 11/95 (11%)
Query: 213 TIVRPLQALLVPKDSTVTLEAEYTGTPT---PEVKWFK----NGKEIVSKDIETKDNVTK 265
T+ + V TV L Y P + W K + V K
Sbjct: 6 TVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGL 65
Query: 266 -LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
V + K++ G + R + + ++ +T
Sbjct: 66 GFVESDSYKESFGDFLGRA---SVANLAAPTLRLT 97
>3dbx_A CD1-2 antigen; CD1, evolution, antigen-presentation, MHC-fold,
hydrophobic groove, immunoglobulin domain, membrane,
transmembrane; HET: NAG PLM; 2.00A {Gallus gallus}
Length = 289
Score = 31.0 bits (71), Expect = 0.95
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 17 VSHQEQP---ALFTCKVEG-HPLP-TMTWQKDGTELHATEHYLITTVESVSTL 64
V + L C+V +P P +TW +DG E+ + + + + L
Sbjct: 195 VFARTAGQVQLLLVCRVTSFYPRPIAVTWLRDGREVPPSP-----ALSTGTVL 242
>3lqz_A HLA class II histocompatibility antigen, DP alpha; MHC, immune,
disulfide bond, glycoprotein, immune respo membrane, MHC
II, transmembrane, immune system; HET: NAG NDG; 3.25A
{Homo sapiens}
Length = 181
Score = 30.5 bits (69), Expect = 0.95
Identities = 12/46 (26%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 339 VTWSHDGTPMKEGKEVT-IYQDTDGL-CKLAISEVFPENAGLYSCT 382
VTW +G + EG + TD K P Y C
Sbjct: 119 VTWLCNGELVTEGVAESLFLPRTDYSFHKFHYLTFVPSAEDFYDCR 164
Score = 30.1 bits (68), Expect = 1.1
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 15/70 (21%)
Query: 21 EQPALFTCKVEG-HPLP-TMTWQKDGTELHATEHYLITTVESV--------STLEIINPT 70
QP C ++ P +TW +G + TE + L + P+
Sbjct: 100 GQPNTLICHIDKFFPPVLNVTWLCNGELV--TEGVAESLFLPRTDYSFHKFHYLTFV-PS 156
Query: 71 KEDIGVYTCK 80
ED Y C+
Sbjct: 157 AED--FYDCR 164
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 29.9 bits (67), Expect = 1.00
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 459 NPTTGECVLSISEATPQDEAVYSVKASSTETK 490
+P T C LSI +A D Y + K
Sbjct: 82 DPQTKNCTLSIRDARMSDAGRYFFRMEKGNIK 113
Score = 29.9 bits (67), Expect = 1.1
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 157 NPTTGECVLSISEATPQDEAVY 178
+P T C LSI +A D Y
Sbjct: 82 DPQTKNCTLSIRDARMSDAGRY 103
>1iak_A MHC class II I-AK; histocompatibility antigen, peptide complex,
histocompa antigen I-AK; HET: NAG; 1.90A {Mus musculus}
SCOP: b.1.1.2 d.19.1.1 PDB: 1d9k_C* 1k2d_A* 1jl4_A
2pxy_C 1u3h_C 2z31_C 1muj_A* 1lnu_A* 3c5z_C 3c60_C
3c6l_C 3rdt_C 2iad_A 1iao_A 1es0_A 3cup_A* 3mbe_A*
1f3j_A*
Length = 199
Score = 30.5 bits (69), Expect = 1.1
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 339 VTWSHDGTPMKEGKEVT-IYQDTDGL-CKLAISEVFPENAGLYSCT 382
+TW + + +G T + + D KL+ P + +Y C
Sbjct: 123 ITWLRNSKSVTDGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCK 168
Score = 29.0 bits (65), Expect = 3.4
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 15/70 (21%)
Query: 21 EQPALFTCKVEG-HPLP-TMTWQKDGTELHATEHYLITTVESV--------STLEIINPT 70
QP C V+ P +TW ++ + T+ T+ S L I P+
Sbjct: 104 GQPNTLICFVDNIFPPVINITWLRNSKSV--TDGVYETSFFVNRDYSFHKLSYLTFI-PS 160
Query: 71 KEDIGVYTCK 80
+D +Y CK
Sbjct: 161 DDD--IYDCK 168
>1uvq_A HLA class II histocompatibility antigen; immunology, MHC class II,
diabetes, narcolepsy, autoimmune disease, structural
proteomics in europe, spine, structural genomics; HET:
NAG FUC BMA; 1.8A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1
PDB: 3pl6_A* 4d8p_A 1s9v_A 2nna_A 1jk8_A*
Length = 197
Score = 30.6 bits (69), Expect = 1.1
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 339 VTWSHDGTPMKEGKEVT-IYQDTDGL-CKLAISEVFPENAGLYSCT 382
+TW +G + EG T +D K++ P +Y C
Sbjct: 122 ITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCK 167
>4aen_A HLA class II histocompatibility antigen, DR alpha; immune system,
SELF antigen, invariant chain, CLIP; 2.20A {Homo
sapiens}
Length = 207
Score = 30.5 bits (69), Expect = 1.1
Identities = 13/46 (28%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 339 VTWSHDGTPMKEGKEVT-IYQDTDGL-CKLAISEVFPENAGLYSCT 382
VTW +G P+ G T D L K P +Y C
Sbjct: 134 VTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCR 179
Score = 27.8 bits (62), Expect = 9.1
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 19/79 (24%)
Query: 16 VVSHQ----EQPALFTCKVEG-HPLP-TMTWQKDGTELHATEHYLITTVESV-------- 61
V+++ +P + C ++ P +TW ++G + T T
Sbjct: 106 VLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPV--TTGVSETVFLPREDHLFRKF 163
Query: 62 STLEIINPTKEDIGVYTCK 80
L + P+ ED VY C+
Sbjct: 164 HYLPFL-PSTED--VYDCR 179
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 29.6 bits (66), Expect = 1.2
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 63 TLEIINPTKEDIGVYTCK-ATNIGGVATCSANLIV 96
TL + T ED G YTC+ AT G L V
Sbjct: 94 TLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein
structure initiative, nysgrc, P biology; HET: MSE NAD;
2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Length = 498
Score = 31.0 bits (71), Expect = 1.2
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 151 GHTME-FNPTTGECVLSISEATPQD--EAVYS-VKAVNTFGR--AECRANLVLRKATTID 204
NP TG ++ ++EA+ AV + +A + + R+N +L+ A I+
Sbjct: 39 EAEEHILNPRTGAGIIDLAEASHAQIDAAVDAAERAFVGWSQTTPAERSNALLKIADAIE 98
Query: 205 K 205
K
Sbjct: 99 K 99
Score = 29.8 bits (68), Expect = 2.5
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 453 GHTME-FNPTTGECVLSISEATPQD--EAVYSVKASSTETKIMTDGNRSVLL 501
NP TG ++ ++EA+ AV + + + T RS L
Sbjct: 39 EAEEHILNPRTGAGIIDLAEASHAQIDAAVDAAERAFVGWSQTTPAERSNAL 90
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence,
kinetics, oxidor; 2.10A {Escherichia coli} SCOP:
c.82.1.1 PDB: 1wnb_A
Length = 495
Score = 30.6 bits (70), Expect = 1.4
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 151 GHTME-FNPTTGECVLSISEATPQD--EAVYSVKAVNTFG-----RAECRANLVLRKATT 202
G +NP TG+ +L I+EA+ + AV + A F + RA +L+ A
Sbjct: 37 GEKQPVYNPATGDVLLEIAEASAEQVDAAVRA--ADAAFAEWGQTTPKVRAECLLKLADV 94
Query: 203 IDK 205
I++
Sbjct: 95 IEE 97
Score = 30.6 bits (70), Expect = 1.6
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 453 GHTME-FNPTTGECVLSISEATPQD--EAVYSVKASSTETKIMTDGNRSVLL 501
G +NP TG+ +L I+EA+ + AV + A+ E T R+ L
Sbjct: 37 GEKQPVYNPATGDVLLEIAEASAEQVDAAVRAADAAFAEWGQTTPKVRAECL 88
>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high resolution,
anisotropic AN refinement, immune system; HET: NAG FUC;
1.35A {Mus musculus} SCOP: b.1.1.2 PDB: 1bqh_B 1cd1_B
1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L 1fzk_B* 1g7q_B*
1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L* 1kj2_L* 1kj3_L
1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...
Length = 99
Score = 28.9 bits (65), Expect = 1.5
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 339 VTWSHDGTPMKEGKEVTIYQDTDGL-CKLAISEVFPENAGLYSCT 382
+ +G + + + + D LA +E P Y+C
Sbjct: 37 IQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACR 81
>3p73_B Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like)
domain, histocompatibi antigen, immune system; HET:
16A; 1.32A {Gallus gallus} PDB: 3p77_B* 3bev_B 3bew_B
3jvg_C* 2yez_B 2yf5_B 2yf6_B 2yf1_B*
Length = 99
Score = 28.8 bits (65), Expect = 1.6
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 16/69 (23%)
Query: 22 QPALFTCKVEG-HPLP-TMTWQKDGTELHATEHYLITTVES--------VSTLEIINPTK 71
+ C G HP ++T KDG + ++ + + + + P+
Sbjct: 19 TKNVLNCFAAGFHPPKISITLMKDGVPMEGAQY---SDMSFNDDWTFQRLVHADFT-PSS 74
Query: 72 EDIGVYTCK 80
Y CK
Sbjct: 75 GS--TYACK 81
Score = 27.7 bits (62), Expect = 3.2
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 339 VTWSHDGTPMKEGKEVTIYQDTDGL-CKLAISEVFPENAGLYSCT 382
+T DG PM+ + + + D +L ++ P + Y+C
Sbjct: 37 ITLMKDGVPMEGAQYSDMSFNDDWTFQRLVHADFTPSSGSTYACK 81
>1k5n_B Beta-2-microglobulin, light chain; MHC(major histocompatibility
complex), HLA(human leukocyte A immune system; 1.09A
{Homo sapiens} SCOP: b.1.1.2 PDB: 1a9b_B 1b0g_B 1b0r_B
1bd2_B 1cg9_B 1a9e_B 1duy_B 1eey_B 1eez_B 1efx_B
1gzp_B* 1gzq_B* 1hhg_B 1hhh_B 1hhi_B 1hhj_B 1hhk_B
1i1f_B 1i1y_B 1duz_B* ...
Length = 100
Score = 28.8 bits (65), Expect = 1.6
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
Query: 22 QPALFTCKVEG-HPLP-TMTWQKDGTELHATEHYLIT-----TVESVSTLEIINPTKEDI 74
+ C V G HP + K+G + EH ++ + + E PT++D
Sbjct: 20 KSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFT-PTEKD- 77
Query: 75 GVYTCK 80
Y C+
Sbjct: 78 -EYACR 82
>3nwm_A Peptide/beta-2microglobulin/MHC class I H-2KD CHI protein;
peptide-MHC complex, immunoglobulin fold system; 2.70A
{Synthetic}
Length = 443
Score = 30.5 bits (69), Expect = 1.6
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 6/43 (13%)
Query: 16 VVSHQEQPA----LFTCKVEG-HPLP-TMTWQKDGTELHATEH 52
V S + C V HP + K+G ++ E
Sbjct: 35 VYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEM 77
Score = 28.6 bits (64), Expect = 6.8
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 37 TMTWQKDGTELH 48
T+TWQ +G +L
Sbjct: 359 TLTWQLNGEDLT 370
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 1.7
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 17/68 (25%)
Query: 167 ISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKD 226
I + P+ E + V A+ F + NL+ K T + L+ L+ +D
Sbjct: 534 ICDNDPKYERL--VNAILDFLP-KIEENLICSKYTDL--------------LRIALMAED 576
Query: 227 STVTLEAE 234
+ EA
Sbjct: 577 EAIFEEAH 584
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.40A {Staphylococcus aureus}
Length = 478
Score = 30.6 bits (70), Expect = 1.7
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 148 PDNGHTME-FNPTTGECVLSISEATPQD--EAVYSVK-AVNTFGR--AECRANLVLRKAT 201
++ T+E NP T E + +++ D +AV + F + R L+ +
Sbjct: 19 SNSNETIEVINPATEEVIGKVAKGNKADVDKAVEAADDVYLEFRHTSVKERQALLDKIVK 78
Query: 202 TIDK 205
+
Sbjct: 79 EYEN 82
Score = 28.6 bits (65), Expect = 5.7
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 450 PDNGHTME-FNPTTGECVLSISEATPQD 476
++ T+E NP T E + +++ D
Sbjct: 19 SNSNETIEVINPATEEVIGKVAKGNKAD 46
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 30.6 bits (69), Expect = 1.8
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 20 QEQPALFTCKVEG----HPLPTMTWQKDGTELHATEHYLI-----TTVESVSTLEIINPT 70
+ TC V P W DG ++H + +T VS L +++
Sbjct: 333 ISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQN 392
Query: 71 KEDIGVYTCKATN 83
D Y CK +N
Sbjct: 393 WLDGKEYKCKVSN 405
Score = 29.4 bits (66), Expect = 3.8
Identities = 65/385 (16%), Positives = 122/385 (31%), Gaps = 66/385 (17%)
Query: 37 TMTWQKDGTELHATEHYLITTVES------VSTLEIINPTKEDIGVYTCKATNIGGVATC 90
T+ W+ DG+ + A + +S S L + + Y+C+ T+ G
Sbjct: 147 TVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEK 206
Query: 91 SANLIVLEKEESGEAPKFTKPLKPVIAE-AQSPATLKATVTG-RPTP-SICWYRGKEEIL 147
+ P PL P + A L V P P ++ W
Sbjct: 207 TVAPTECSASTK--GPS-VFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSW-------- 255
Query: 148 PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAE-------CRANLVLRKA 200
N + T A Q +YS+ +V T + C N
Sbjct: 256 --NSGALTSGVHT-------FPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNT 306
Query: 201 TTIDKPRVLEAPTIVRPLQA----LLVPKDSTVTLEAE--YTGTPTPEVKWFKNGKEIVS 254
+ L P++ L++ + VT P + W+ +G ++ +
Sbjct: 307 KVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHN 366
Query: 255 KDIETKDN--------VTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV 306
+ ++ V+ L + +Y+ +V N+A TI+ A+ +
Sbjct: 367 AKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKAL--PAPIEKTISKAKGQPR 424
Query: 307 MMDVRVESHPTASFQWFIHSEPVVVT-----GKPTPL-VTWSHDGTPMKEGKEVTIYQDT 360
V + + + V +T P+ + V W +G P K D+
Sbjct: 425 EPQV----YTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDS 480
Query: 361 DGLC----KLAISEVFPENAGLYSC 381
DG KL + + + ++SC
Sbjct: 481 DGSFFLYSKLTVDKSRWQQGNVFSC 505
>3bev_A Major histocompatibility complex class I glycoprotein haplotype
B21; MHC class I, chicken, BF21, 11MER, peptide, bulge,
water cushion, immune response, immunoglobulin domain,
MHC I; 2.10A {Gallus gallus} PDB: 3bew_A
Length = 274
Score = 29.9 bits (68), Expect = 2.0
Identities = 9/53 (16%), Positives = 14/53 (26%), Gaps = 17/53 (32%)
Query: 37 TMTWQKDGTELHATEHYLITTVESVSTL----------EIINPTKEDIGVYTC 79
++W KDG +S + I+ D Y C
Sbjct: 210 VVSWLKDGAVRGQ-------DAQSGGIVPNGDGTYHTWVTIDAQPGDGDKYQC 255
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 28.8 bits (64), Expect = 2.1
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 19/90 (21%)
Query: 15 PVVSHQE-QPALFTCKV----EGHPLPTMTWQKD----GTELH----------ATEHYLI 55
P + E A C + ++TW +D G E+ A
Sbjct: 15 PEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSR 74
Query: 56 TTVESVSTLEIINPTKEDIGVYTCKATNIG 85
+ + L I + D +Y C+ +G
Sbjct: 75 FLHDHQAELHIRDVRGHDASIYVCRVEVLG 104
Score = 28.0 bits (62), Expect = 4.4
Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 16/80 (20%)
Query: 115 VIAEAQSPATL----KATVTGRPTPSICWYR-----GKEEILPDNGHTMEFNPTTGECV- 164
+ S A L A+ S+ W+R GKE P
Sbjct: 17 IRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFL 76
Query: 165 ------LSISEATPQDEAVY 178
L I + D ++Y
Sbjct: 77 HDHQAELHIRDVRGHDASIY 96
Score = 28.0 bits (62), Expect = 4.4
Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 16/80 (20%)
Query: 417 VIAEAQSPATL----KATVTGRPTPSICWYR-----GKEEILPDNGHTMEFNPTTGECV- 466
+ S A L A+ S+ W+R GKE P
Sbjct: 17 IRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFL 76
Query: 467 ------LSISEATPQDEAVY 480
L I + D ++Y
Sbjct: 77 HDHQAELHIRDVRGHDASIY 96
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 29.5 bits (66), Expect = 2.2
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 9/73 (12%)
Query: 20 QEQPALFTCKVEG----HPLPTMTWQKDGTELHATEHYLIT-----TVESVSTLEIINPT 70
+ TC V P W DG E+H + T VS L +++
Sbjct: 17 ISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQD 76
Query: 71 KEDIGVYTCKATN 83
+ Y CK +N
Sbjct: 77 WLNGKEYKCKVSN 89
>2qrt_A H-2KB, H-2 class I histocompatibility antigen K-B alpha chain,
beta-2 microglobulin, ovalbumin-derived...; MHC-I,
single chain MHC-I, glycoprotein; 1.80A {Mus musculus}
PDB: 2qrs_A 2qri_A
Length = 422
Score = 30.1 bits (68), Expect = 2.3
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 37 TMTWQKDGTELHATEH 52
+ K+G ++ E
Sbjct: 59 EIQMLKNGKKIPKVEM 74
Score = 28.2 bits (63), Expect = 7.7
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 37 TMTWQKDGTELH 48
T+TWQ +G EL
Sbjct: 356 TLTWQLNGEELI 367
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 29.5 bits (66), Expect = 2.3
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 9/73 (12%)
Query: 20 QEQPALFTCKVEG----HPLPTMTWQKDGTELHATEHYLIT-----TVESVSTLEIINPT 70
TC V P ++W + E+H + T+ VSTL I +
Sbjct: 25 ISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQD 84
Query: 71 KEDIGVYTCKATN 83
+ CK N
Sbjct: 85 WMSGKEFKCKVNN 97
>2yf1_A Major histocompatibility complex class I glycoPro haplotype B21;
immune system, BF21, immune response, immunoglobulin
domain; 2.75A {Gallus gallus} PDB: 2yez_A 2yf5_A 2yf6_A
Length = 329
Score = 30.0 bits (68), Expect = 2.3
Identities = 9/53 (16%), Positives = 14/53 (26%), Gaps = 17/53 (32%)
Query: 37 TMTWQKDGTELHATEHYLITTVESVSTL----------EIINPTKEDIGVYTC 79
++W KDG +S + I+ D Y C
Sbjct: 231 VVSWLKDGAVRGQ-------DAQSGGIVPNGDGTYHTWVTIDAQPGDGDKYQC 276
>2bc4_A HLA class II histocompatibility antigen, DM alpha chain; MHC class
II, immune system; HET: NDG BMA; 2.27A {Homo sapiens}
PDB: 1hdm_A 1k8i_A*
Length = 211
Score = 29.3 bits (65), Expect = 2.4
Identities = 21/152 (13%), Positives = 41/152 (26%), Gaps = 5/152 (3%)
Query: 236 TGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYE-IRVVNEAGEARTSG 294
G+P+ + + ++ D V +L + G I E E
Sbjct: 26 DGSPSVGLSEAYDEDQLFFFDFSQNTRVPRLPEFADWAQEQGDAPAILFDKEFCEWMIQQ 85
Query: 295 SVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVV-VTG--KPTPLVTWSHDGTPMKEG 351
+ E ++ + V V+ P V W H P++
Sbjct: 86 IGPKLDGKIPVSRGFPIAEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNWQHHSVPVEGF 145
Query: 352 KEVTIYQDTDGL-CKLAISEVFPENAGLYSCT 382
+ + PE + ++SC
Sbjct: 146 GPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCI 177
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 29.9 bits (67), Expect = 2.5
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 165 LSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVP 224
L + QDE ++ +A+N G+ E ++N +R KP ++++ + L A +
Sbjct: 434 LFLPAVGIQDEGIFRCQAMNRNGK-ETKSNYRVRVYQIPGKPEIVDSASE---LTAGVPN 489
Query: 225 KDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD 256
K T E Y P + W +GK +V +
Sbjct: 490 KVGTCVSEGSY---PAGTLSWHLDGKPLVPNE 518
Score = 28.8 bits (64), Expect = 6.0
Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 18/95 (18%)
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQS- 121
+L + +D G++ C+A N G E + + + P KP I ++ S
Sbjct: 433 SLFLPAVGIQDEGIFRCQAMNRNGK----------ETKSNYRVRVYQIPGKPEIVDSASE 482
Query: 122 -----PATLKATVT--GRPTPSICWYRGKEEILPD 149
P + V+ P ++ W+ + ++P+
Sbjct: 483 LTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPN 517
>3ov6_A Beta-2-microglobulin, T-cell surface glycoprotein cell surface
glycoprotein CD1B; MHC, immunoglobulin domain, immune
system, antigen presentat; HET: NAG D12 MK0; 2.50A
{Homo sapiens}
Length = 397
Score = 30.0 bits (68), Expect = 2.5
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 6/43 (13%)
Query: 16 VVSHQEQPA----LFTCKVEG-HPLP-TMTWQKDGTELHATEH 52
V S C V G HP + K+G + EH
Sbjct: 12 VYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEH 54
Score = 28.8 bits (65), Expect = 5.7
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 6/42 (14%)
Query: 17 VSHQEQP----ALFTCKVEG-HPLP-TMTWQKDGTELHATEH 52
+S P C V G +P P + W + E T+
Sbjct: 309 LSSGPSPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQL 350
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde
oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB:
1bpw_A*
Length = 503
Score = 29.8 bits (68), Expect = 2.6
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 450 PDNGHTME--FNPTTGECVLSISEATPQD--EAVYSVKASSTETKIMTDGNRSVLL 501
+G T E F P TG + + ++ +AV S +A+ + M RS ++
Sbjct: 31 SKDGATTEPVFEPATGRVLCQMVPCGAEEVDQAVQSAQAAYLKWSKMAGIERSRVM 86
Score = 29.1 bits (66), Expect = 4.4
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 148 PDNGHTME--FNPTTGECVLSISEATPQD--EAVYSV-KAVNTFGR--AECRANLVLRKA 200
+G T E F P TG + + ++ +AV S A + + R+ ++L A
Sbjct: 31 SKDGATTEPVFEPATGRVLCQMVPCGAEEVDQAVQSAQAAYLKWSKMAGIERSRVMLEAA 90
Query: 201 TTIDK 205
I +
Sbjct: 91 RIIRE 95
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome,
unknown function; 1.72A {Clostridium thermocellum} PDB:
3pdg_A
Length = 190
Score = 29.2 bits (65), Expect = 2.7
Identities = 16/108 (14%), Positives = 35/108 (32%), Gaps = 8/108 (7%)
Query: 200 ATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT--PTPEVKWFKNGKEIVSKDI 257
+ K V + P ++ + + + A + + V + +G+ I S
Sbjct: 82 TPVLVKVIVKPTVKLTAPKSNVVAYGNEFLKITATASDSDGKISRVDFLVDGEVIGS--- 138
Query: 258 ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAET 305
D + + + + ++ A T SV I V +A
Sbjct: 139 ---DREAPYEYEWKAVEGNHEISVIAYDDDDAASTPDSVKIFVKQARL 183
>3s6c_A Beta-2-microglobulin, T-cell surface glycoprotein
membrane-associated; MHC, immunoglobulin domain, immune
system, antigen presentat glycosylation; HET: NAG FUC;
2.90A {Homo sapiens}
Length = 392
Score = 29.6 bits (67), Expect = 2.7
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 27 TCKVEG-HPLP-TMTWQKDGTELHATEH 52
C V G HP + K+G + EH
Sbjct: 24 NCYVSGFHPSDIEVDLLKNGERIEKVEH 51
>2p24_A H-2 class II histocompatibility antigen, A-U ALPH; MHC, I-AU,
immunoglobulin fold, MBP, immune system; 2.15A {Mus
musculus} SCOP: b.1.1.2 d.19.1.1
Length = 236
Score = 29.4 bits (66), Expect = 2.8
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 339 VTWSHDGTPMKEGKEVT-IYQDTDGL-CKLAISEVFPENAGLYSCT 382
+TW + + +G T + + D KL+ P + +Y C
Sbjct: 153 ITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCK 198
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 29.6 bits (67), Expect = 2.9
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 512 DVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSV 562
+ A+ + TAT+S+ V DV E+P F P+ + +G
Sbjct: 307 NQVPLAKGIQHPPQSTATVSV----TVIDVNENPYFAPNPKIIRQEEGLHA 353
>3jts_B Beta-2-microglobulin; alpha helix, beta sheet, beta barrel, immune
response, MHC I membrane, transmembrane, disease
mutation; 2.80A {Homo sapiens}
Length = 119
Score = 28.1 bits (63), Expect = 2.9
Identities = 16/75 (21%), Positives = 22/75 (29%), Gaps = 26/75 (34%)
Query: 21 EQPALFTCKVEG-HPLP-TMTWQKDGTELHATEHYLITTVESVST-------------LE 65
+ C V G HP + K+G I VE E
Sbjct: 38 GKSNFLNCYVSGFHPSDIEVDLLKNGER--------IEKVEHSDLSFSKDWSFYLLYYTE 89
Query: 66 IINPTKEDIGVYTCK 80
PT++D Y C+
Sbjct: 90 FT-PTEKD--EYACR 101
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Length = 517
Score = 29.8 bits (68), Expect = 3.0
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 450 PDNGHTME-FNPTTGECVLSISEATPQD--EAVYSVKASSTETKIMTDGNRSVLL 501
+ G E P TGE + + ATP A+ S K + E M+ R +L
Sbjct: 26 DNTGTPFESIFPATGEMIAKLHAATPAIVERAIASAKRAQKEWAAMSPMARGRIL 80
Score = 29.5 bits (67), Expect = 3.4
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 10/66 (15%)
Query: 148 PDNGHTME-FNPTTGECVLSISEATPQD--EAVYSVKAVNTFG-----RAECRANLVLRK 199
+ G E P TGE + + ATP A+ S A R ++ R
Sbjct: 26 DNTGTPFESIFPATGEMIAKLHAATPAIVERAIAS--AKRAQKEWAAMSPMARGRILKRA 83
Query: 200 ATTIDK 205
A + +
Sbjct: 84 ADIMRE 89
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 29.1 bits (65), Expect = 3.1
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 9/71 (12%)
Query: 22 QPALFTCKVEGHPLP----TMTWQKDGTELHATEHYLIT-----TVESVSTLEIINPTKE 72
TC V +W D E+H + + T+ SVS L I+
Sbjct: 33 LTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWL 92
Query: 73 DIGVYTCKATN 83
+ + CK +
Sbjct: 93 NGKTFKCKVNS 103
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 28.0 bits (62), Expect = 3.1
Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 20/93 (21%)
Query: 228 TVTLEAEYT-GTPTPEVKWFKNGK--EIVSKDIETKDNVTK-----------------LV 267
+VT + W + D ET VT LV
Sbjct: 16 SVTFPVNIQEPRQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRNYYERIHALGPNYNLV 75
Query: 268 IKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
I + G Y+ + +A T+ + +
Sbjct: 76 ISDLRMEDAGDYKADINTQADPYTTTKRYNLQI 108
Score = 27.2 bits (60), Expect = 6.6
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVATCSA--NLIVLEK 99
L I + ED G Y T + NL + +
Sbjct: 73 NLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQIYRR 111
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Bartonella henselae}
Length = 497
Score = 29.4 bits (67), Expect = 3.2
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 148 PDNGHTME-FNPTTGECVLSISEATPQD--EAVYSVK-AVNTFGR--AECRANLVLRKAT 201
P H + +P+T E IS + +D +A+ + K A T+ R V +
Sbjct: 37 PSTPHDLYVIDPSTEEACAVISLGSTRDADKAINAAKKAFQTWKTTSPHERLGFVEKILE 96
Query: 202 TIDK 205
+K
Sbjct: 97 IYEK 100
Score = 28.3 bits (64), Expect = 7.7
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 450 PDNGHTME-FNPTTGECVLSISEATPQD 476
P H + +P+T E IS + +D
Sbjct: 37 PSTPHDLYVIDPSTEEACAVISLGSTRD 64
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 27.9 bits (62), Expect = 3.6
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 63 TLEIINPTKEDIGVYTC 79
TL + N +D G+Y C
Sbjct: 70 TLRLHNLQIKDKGLYQC 86
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP
complex, oxidoreductase; HET: NAP CSO; 2.10A
{Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A*
2xdr_A*
Length = 490
Score = 29.4 bits (67), Expect = 3.6
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
Query: 150 NGHTME-FNPTTGECVLSISEATPQD--EAVYSVKAVNTFG-----RAECRANLVLRKAT 201
+G T E NP GE + + A+ +D AV S AV A R+ ++ R
Sbjct: 20 SGATFETINPANGEVLAKVQRASREDVERAVQS--AVEGQKVWAAMTAMQRSRILRRAVD 77
Query: 202 TIDK 205
+ +
Sbjct: 78 ILRE 81
Score = 29.4 bits (67), Expect = 3.7
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 452 NGHTME-FNPTTGECVLSISEATPQD--EAVYSVKASSTETKIMTDGNRSVLL 501
+G T E NP GE + + A+ +D AV S MT RS +L
Sbjct: 20 SGATFETINPANGEVLAKVQRASREDVERAVQSAVEGQKVWAAMTAMQRSRIL 72
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti
deseases, NAD, oxidoreductase, PSI; 1.70A
{Staphylococcus aureus} PDB: 3fg0_A*
Length = 520
Score = 29.5 bits (67), Expect = 3.6
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 148 PDNGHTME-FNPTTGECVLSISEATPQD--EAV 177
N +T + NP E + ++SE T +D A+
Sbjct: 44 SANKNTRDIINPYNQEVIFTVSEGTKEDAERAI 76
Score = 29.5 bits (67), Expect = 3.6
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 450 PDNGHTME-FNPTTGECVLSISEATPQD--EAV 479
N +T + NP E + ++SE T +D A+
Sbjct: 44 SANKNTRDIINPYNQEVIFTVSEGTKEDAERAI 76
>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold,
toxin-immune system complex; 2.95A {Rattus norvegicus}
Length = 125
Score = 27.9 bits (63), Expect = 3.8
Identities = 19/98 (19%), Positives = 27/98 (27%), Gaps = 30/98 (30%)
Query: 120 QSPATL------KATVTGRPTPSIC----WYR---GK----------EEILPDNGHTMEF 156
QSP K T++ + T S WYR G + +
Sbjct: 10 QSPRNKVAVTGEKVTLSCKQTNSYFNNMYWYRQDTGHELRLIFMSHGIRNVEKGDIPDGY 69
Query: 157 NPTTG---ECVLSISEATPQDEAVY----SVKAVNTFG 187
+ L + ATP +VY FG
Sbjct: 70 KASRPSQENFSLILELATPSQTSVYFCASGGGGTLYFG 107
Score = 27.2 bits (61), Expect = 6.6
Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 26/85 (30%)
Query: 422 QSPATL------KATVTGRPTPSIC----WYR---GK----------EEILPDNGHTMEF 458
QSP K T++ + T S WYR G + +
Sbjct: 10 QSPRNKVAVTGEKVTLSCKQTNSYFNNMYWYRQDTGHELRLIFMSHGIRNVEKGDIPDGY 69
Query: 459 NPTTG---ECVLSISEATPQDEAVY 480
+ L + ATP +VY
Sbjct: 70 KASRPSQENFSLILELATPSQTSVY 94
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 28.8 bits (64), Expect = 3.9
Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 6/91 (6%)
Query: 165 LSISEATPQDEAVY---SVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQAL 221
L I +A +D Y + + G LV + T + + P +P +
Sbjct: 73 LHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPA--KPSVFI 130
Query: 222 LVPKDSTVTLEAEYTGTPTPEVKWFKNGKEI 252
+ + L ++ + + K +
Sbjct: 131 MKNGTNVACLVKDFYPKEV-TISLRSSKKIV 160
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 28.7 bits (64), Expect = 4.3
Identities = 21/97 (21%), Positives = 29/97 (29%), Gaps = 27/97 (27%)
Query: 120 QSPATLKATV----------TGRPTPSICWYR---GKEEIL-----------PDNGHTME 155
QSP +L WY G+ L D T+
Sbjct: 5 QSPQSLTVWEGETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIF 64
Query: 156 FNPTTGECVLSISEATPQDEAVYSVKAVN---TFGRA 189
FN + L I+++ P D A Y A + FG
Sbjct: 65 FNKREKKFSLHIADSQPGDSATYFCAASDNRIFFGDG 101
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 28.5 bits (63), Expect = 4.5
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 14/71 (19%)
Query: 122 PATLKATVTGRPTPSICWYR---GKEEIL-----------PDNGHTMEFNPTTGECVLSI 167
L+ + P + WY+ GK +L + ++ + L I
Sbjct: 18 NCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLDKDAKHSTLHI 77
Query: 168 SEATPQDEAVY 178
+ D A Y
Sbjct: 78 TATLLDDTATY 88
Score = 28.5 bits (63), Expect = 4.5
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 14/71 (19%)
Query: 424 PATLKATVTGRPTPSICWYR---GKEEIL-----------PDNGHTMEFNPTTGECVLSI 469
L+ + P + WY+ GK +L + ++ + L I
Sbjct: 18 NCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLDKDAKHSTLHI 77
Query: 470 SEATPQDEAVY 480
+ D A Y
Sbjct: 78 TATLLDDTATY 88
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm,
mouse IGG, zinc-finger, DNA-binding, RNA-binding,
tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC;
1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 28.7 bits (64), Expect = 4.6
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 9/71 (12%)
Query: 22 QPALFTCKVEGH----PLPTMTWQKDGTELHATEHYLIT-----TVESVSTLEIINPTKE 72
TC V P +W D E+H + T SVS L I++
Sbjct: 19 LTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWL 78
Query: 73 DIGVYTCKATN 83
+ + C+ +
Sbjct: 79 NGKEFKCRVNS 89
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 28.4 bits (63), Expect = 4.7
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 16/96 (16%)
Query: 424 PATLKATVTGRPTPSICWYR---GKEEIL-----------PDNGHTMEFNPTTGECVLSI 469
L + T ++ W+R GK + ++G L I
Sbjct: 17 NLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYI 76
Query: 470 SEATPQDEAVY--SVKASSTETKIMTDGNRSVLLIS 503
+ + P D A Y +V+ +S + I T G + L++
Sbjct: 77 AASQPGDSATYLCAVRPTSGGSYIPTFGRGTSLIVH 112
>2wy3_A MHC class I polypeptide-related sequence B; immune system-viral
protein complex, immune response, innate immunity,
structural mimicry; HET: NAG PEU; 1.80A {Homo sapiens}
PDB: 1je6_A 1hyr_C 1b3j_A*
Length = 319
Score = 28.8 bits (65), Expect = 4.8
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 6/28 (21%)
Query: 37 TMTWQKDGTELHATEHYLITTVESVSTL 64
T+TW++DG L T + L
Sbjct: 214 TLTWRQDGVSLSH------NTQQWGDVL 235
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 29.1 bits (65), Expect = 4.8
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 513 VTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSV 562
V T TAT+++ V DV E+P F+ V + S
Sbjct: 457 VENAEPFSVPLPTSTATVTV----TVEDVNEAPFFVPAVSRVDVSEDLSR 502
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 28.1 bits (63), Expect = 4.8
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 15/64 (23%)
Query: 130 TGRPTPSICWYR---------------GKEEILPDNGHTMEFNPTTGECVLSISEATPQD 174
T + + WY+ K+E +++ F L I+ +D
Sbjct: 26 TQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIED 85
Query: 175 EAVY 178
AVY
Sbjct: 86 SAVY 89
Score = 28.1 bits (63), Expect = 4.8
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 15/64 (23%)
Query: 432 TGRPTPSICWYR---------------GKEEILPDNGHTMEFNPTTGECVLSISEATPQD 476
T + + WY+ K+E +++ F L I+ +D
Sbjct: 26 TQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIED 85
Query: 477 EAVY 480
AVY
Sbjct: 86 SAVY 89
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 28.1 bits (62), Expect = 4.9
Identities = 17/112 (15%), Positives = 32/112 (28%), Gaps = 27/112 (24%)
Query: 103 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYR---GKEEILP----------- 148
+AP+ K + AE L V G + W + P
Sbjct: 7 PQAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHN 66
Query: 149 ----DNGHTMEFNPTTG-----ECVLSISEATPQDEAVY----SVKAVNTFG 187
D + + VL++++ + ++E Y +V F
Sbjct: 67 KITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFS 118
Score = 28.1 bits (62), Expect = 5.1
Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 23/99 (23%)
Query: 405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYR---GKEEILP----------- 450
+AP+ K + AE L V G + W + P
Sbjct: 7 PQAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHN 66
Query: 451 ----DNGHTMEFNPTTG-----ECVLSISEATPQDEAVY 480
D + + VL++++ + ++E Y
Sbjct: 67 KITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYY 105
Score = 27.7 bits (61), Expect = 8.4
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Query: 62 STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQS 121
L + +KE+ G Y C + V S+ + VL+K S P
Sbjct: 90 YVLTLNKFSKENEGYYFC-SVISNSVMYFSSVVPVLQKVNS--TTTKPVLRTPSPVHPTG 146
Query: 122 PATLKATVTGRPTPSI 137
+ + RP S+
Sbjct: 147 TSQPQRPEDCRPRGSV 162
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 27.6 bits (62), Expect = 5.0
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 15/64 (23%)
Query: 130 TGRPTPSICWYR---------------GKEEILPDNGHTMEFNPTTGECVLSISEATPQD 174
T + + WY+ K+E +++ F L I+ +D
Sbjct: 26 TQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIED 85
Query: 175 EAVY 178
AVY
Sbjct: 86 SAVY 89
Score = 27.6 bits (62), Expect = 5.0
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 15/64 (23%)
Query: 432 TGRPTPSICWYR---------------GKEEILPDNGHTMEFNPTTGECVLSISEATPQD 476
T + + WY+ K+E +++ F L I+ +D
Sbjct: 26 TQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIED 85
Query: 477 EAVY 480
AVY
Sbjct: 86 SAVY 89
>1t7v_A Zinc-alpha-2-glycoprotein; MHC class I homolog, PEG, lipid binding
protein; HET: NAG P6G; 1.95A {Homo sapiens} SCOP:
b.1.1.2 d.19.1.1 PDB: 1t7w_A* 1t7x_A* 1t7y_A* 1t7z_A*
1t80_A* 2icn_A* 3es6_A* 1zag_A*
Length = 278
Score = 28.8 bits (65), Expect = 5.0
Identities = 2/16 (12%), Positives = 4/16 (25%)
Query: 37 TMTWQKDGTELHATEH 52
+ W + G
Sbjct: 216 DVHWTRAGEVQEPELR 231
>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome,
unknown function; 1.69A {Clostridium thermocellum}
Length = 98
Score = 27.1 bits (60), Expect = 5.1
Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 8/95 (8%)
Query: 213 TIVRPLQALLVPKDSTVTLEAEYT--GTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQ 270
+ P ++ + + + A + V + +G+ I S D +
Sbjct: 3 KLTAPKSNVVAYGNEFLKITATASDSDGKISRVDFLVDGEVIGS------DREAPYEYEW 56
Query: 271 TTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAET 305
+ + + ++ A T SV I V +A
Sbjct: 57 KAVEGNHEISVIAYDDDDAASTPDSVKIFVKQARL 91
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine
aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD;
2.15A {Pisum sativum} PDB: 3iwk_A* 4a0m_A*
Length = 503
Score = 29.0 bits (66), Expect = 5.2
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 148 PDNGHTME-FNPTTGECVLSISEATPQD--EAV 177
P + NP T + I AT +D AV
Sbjct: 19 PVLNKRIPVINPATQNIIGDIPAATKEDVDVAV 51
Score = 29.0 bits (66), Expect = 5.2
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 450 PDNGHTME-FNPTTGECVLSISEATPQD--EAV 479
P + NP T + I AT +D AV
Sbjct: 19 PVLNKRIPVINPATQNIIGDIPAATKEDVDVAV 51
>3p73_A MHC RFP-Y class I alpha chain; IG-like C1-type
(immunoglobulin-like) domain, histocompatibi antigen,
immune system; HET: 16A; 1.32A {Gallus gallus} PDB:
3p77_A*
Length = 275
Score = 28.7 bits (65), Expect = 5.5
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 37 TMTWQKDGTELH 48
T++W KDG
Sbjct: 212 TISWMKDGMVRD 223
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 28.6 bits (64), Expect = 5.5
Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 9/75 (12%)
Query: 20 QEQPALFTCKVEGHPL--PTMTWQKDGTELHATEHYLITTVESV-------STLEIINPT 70
A C + + W+ DG+E T +S STL +
Sbjct: 168 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDE 227
Query: 71 KEDIGVYTCKATNIG 85
E YTC+AT+
Sbjct: 228 YERHNSYTCEATHKT 242
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 27.5 bits (61), Expect = 5.7
Identities = 10/36 (27%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 63 TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
L I N KED G Y + L V +
Sbjct: 74 ALHISNVRKEDKGTYYMR-VLRETENELKITLEVFD 108
>1r3h_A MHC H2-TL-T10-129; class IB MHC, gammadelta T cell ligand, immune
system; 2.50A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB:
1c16_A 1ypz_A*
Length = 260
Score = 28.4 bits (64), Expect = 5.7
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 37 TMTWQKDGTELH 48
T+TWQKDG EL
Sbjct: 198 TLTWQKDGEELT 209
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune
system/receptor, immune system/receptor/complex, TCR,
MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D
2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D
Length = 215
Score = 28.4 bits (63), Expect = 5.7
Identities = 21/97 (21%), Positives = 29/97 (29%), Gaps = 28/97 (28%)
Query: 120 QSPATLKATVTGRPT---------PSICWYR---GKEEIL-----------PDNGHTMEF 156
QSP L T S+ WYR G+ +L T +F
Sbjct: 6 QSPQFLSIQEGENLTVYCNSSSVFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQF 65
Query: 157 NPTTGECVLSISEATPQDEAVYSVKAVN-----TFGR 188
+ L I+ A P D +Y FG+
Sbjct: 66 GDARKDSSLHITAAQPGDTGLYLCAGAGSQGNLIFGK 102
Score = 28.0 bits (62), Expect = 7.9
Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 23/82 (28%)
Query: 422 QSPATLKATVTGRPT---------PSICWYR---GKEEIL-----------PDNGHTMEF 458
QSP L T S+ WYR G+ +L T +F
Sbjct: 6 QSPQFLSIQEGENLTVYCNSSSVFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQF 65
Query: 459 NPTTGECVLSISEATPQDEAVY 480
+ L I+ A P D +Y
Sbjct: 66 GDARKDSSLHITAAQPGDTGLY 87
>1fne_B Protein (MHC class II I-EK, beta chain); histocompatibility
antigen, immune system; HET: NAG; 1.90A {Mus musculus}
SCOP: b.1.1.2 d.19.1.1 PDB: 1iea_B* 1i3r_B* 1fng_B*
1ktd_B* 1ieb_B* 1kt2_B* 3o6f_B 3t0e_B
Length = 224
Score = 28.2 bits (63), Expect = 6.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 242 EVKWFKNGKEIVSKDIET 259
EV+WF+NGKE + + T
Sbjct: 154 EVRWFRNGKEEKTGIVST 171
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 27.3 bits (61), Expect = 6.4
Identities = 12/86 (13%), Positives = 21/86 (24%), Gaps = 28/86 (32%)
Query: 120 QSPATLKATVTGRPTPSIC------------WYR---GKEEIL------------PDNGH 152
PA L + T + C W R + D
Sbjct: 4 FYPAWLTVSEGANATFT-CSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARF 62
Query: 153 TMEFNPTTGECVLSISEATPQDEAVY 178
+ P + ++I + D +Y
Sbjct: 63 QIIQLPNRHDFHMNILDTRRNDSGIY 88
Score = 27.3 bits (61), Expect = 6.4
Identities = 12/86 (13%), Positives = 21/86 (24%), Gaps = 28/86 (32%)
Query: 422 QSPATLKATVTGRPTPSIC------------WYR---GKEEIL------------PDNGH 454
PA L + T + C W R + D
Sbjct: 4 FYPAWLTVSEGANATFT-CSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARF 62
Query: 455 TMEFNPTTGECVLSISEATPQDEAVY 480
+ P + ++I + D +Y
Sbjct: 63 QIIQLPNRHDFHMNILDTRRNDSGIY 88
>3sze_A Serine protease ESPP; parallel beta-helix, hydrolase; 2.50A
{Escherichia coli O157}
Length = 968
Score = 28.8 bits (63), Expect = 6.6
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 248 NGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAET 305
N + ++ D KL + K +G+ I +V+ + + I + A
Sbjct: 850 NSAYAMRTNLSESD---KLEV---KKHLSGENNILLVDFLQKPTPEKQLNIELVSAPK 901
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 28.1 bits (62), Expect = 6.7
Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 16/96 (16%)
Query: 424 PATLKATVTGRPTPSICWYR---GKEEIL-----------PDNGHTMEFNPTTGECVLSI 469
P L T +P + WY + L G + ++ L
Sbjct: 18 PVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQK 77
Query: 470 SEATPQDEAVY--SVKASSTETKIMTDGNRSVLLIS 503
S A D A+Y ++ +S+ + G + L +
Sbjct: 78 SSAQLSDSALYYCALFLASSSFSKLVFGQGTSLSVV 113
>3jvg_A T-cell surface glycoprotein CD1A1 antigen; CD1, T-cell, lipid,
antigen, transmembrane, disulfide bond, immune response,
immunoglobulin domain, MHC I, polymorphism; HET: UNL
NAG; 2.20A {Gallus gallus}
Length = 281
Score = 28.3 bits (64), Expect = 7.1
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 17 VSHQEQP---ALFTCKVEG-HPLP-TMTWQKDGTELHATE 51
V + L C+V +P P +TW +DG E+ +
Sbjct: 187 VFARTAGQAQLLLVCRVTSFYPRPIAVTWLRDGREVPPSP 226
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 28.1 bits (62), Expect = 7.2
Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 15/72 (20%)
Query: 122 PATLKATVTGRPTPSICWYR---------------GKEEILPDNGHTMEFNPTTGECVLS 166
L+ + TP + WY G + NG EF+ + L
Sbjct: 26 SLQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLR 85
Query: 167 ISEATPQDEAVY 178
+ D AVY
Sbjct: 86 KASVHWSDSAVY 97
Score = 28.1 bits (62), Expect = 7.2
Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 15/72 (20%)
Query: 424 PATLKATVTGRPTPSICWYR---------------GKEEILPDNGHTMEFNPTTGECVLS 468
L+ + TP + WY G + NG EF+ + L
Sbjct: 26 SLQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLR 85
Query: 469 ISEATPQDEAVY 480
+ D AVY
Sbjct: 86 KASVHWSDSAVY 97
>1mhc_A MHC class I antigen H2-M3; histocompatibility antigen/peptide,
histocompatibility antig peptide complex; HET: FME NAG;
2.10A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Length = 282
Score = 28.0 bits (63), Expect = 7.3
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 37 TMTWQKDGTELH 48
T+TWQKD +L
Sbjct: 214 TLTWQKDEEDLT 225
>1zs8_A Histocompatibility 2, M region locus 10.5; major histocompatibility
complex, MHC, vomeronasal organ, VN receptors, pheromone
receptors, pepti immune system; HET: NAG; 3.00A {Mus
musculus} SCOP: b.1.1.2 d.19.1.1
Length = 274
Score = 28.1 bits (63), Expect = 7.5
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 37 TMTWQKDGTELH 48
T+TW++DG
Sbjct: 213 TLTWKRDGKNHT 224
>3lqz_B HLA-DP2 beta chain linked with DRA peptide; MHC, immune, disulfide
bond, glycoprotein, immune respo membrane, MHC II,
transmembrane, immune system; HET: NAG NDG; 3.25A {Homo
sapiens}
Length = 212
Score = 27.8 bits (62), Expect = 7.6
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 242 EVKWFKNGKEIVSKDIET 259
+V+WF NG+E + + T
Sbjct: 149 QVRWFLNGQEETAGVVST 166
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
PSI-2, protein STR initiative; HET: NAD GOL; 1.80A
{Mycobacterium tuberculosis}
Length = 495
Score = 28.3 bits (64), Expect = 7.8
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 148 PDNGHTME-FNPTTGECVLSISEATPQD 174
P +E P TGE V + A D
Sbjct: 20 PSTSDVIEVRCPATGEYVGKVPMAAAAD 47
Score = 28.3 bits (64), Expect = 7.8
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 450 PDNGHTME-FNPTTGECVLSISEATPQD 476
P +E P TGE V + A D
Sbjct: 20 PSTSDVIEVRCPATGEYVGKVPMAAAAD 47
>4ah2_B HLA class II histocompatibility antigen gamma CHA class II
histocompatibility antigen\,DRB1-1...; MHC II, immune
system, SELF antigen; 2.36A {Homo sapiens}
Length = 229
Score = 27.9 bits (62), Expect = 7.9
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 242 EVKWFKNGKEIVSKDIET 259
EV+WF+NG+E + + T
Sbjct: 159 EVRWFRNGQEEKAGVVST 176
>3c5j_B MHC class II antigen; HLA, MHC class II, glycoprotein, immune
response, membrane, transmembrane, GTP-binding,
methylation; HET: NAG; 1.80A {Homo sapiens} PDB: 2q6w_B
1a6a_B* 1d5m_B* 1j8h_B* 1d5z_B* 1d5x_B* 1d6e_B* 2seb_B*
2wbj_B* 1ymm_B* 3l6f_B* 3s4s_B 3s5l_B 1fyt_B* 1seb_B
1bx2_B* 1zgl_B 1fv1_B 1h15_B* 1hqr_B ...
Length = 190
Score = 27.7 bits (62), Expect = 8.0
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 242 EVKWFKNGKEIVS 254
EV+WF+NG+E +
Sbjct: 128 EVRWFRNGQEEKT 140
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 27.1 bits (60), Expect = 8.1
Identities = 15/94 (15%), Positives = 24/94 (25%), Gaps = 26/94 (27%)
Query: 111 PLKPVIAEAQSPATL------KATVTGRPTPSIC-----WYR---GKEEIL--------- 147
P P + PA L AT T + W R +
Sbjct: 5 PNGPWRSLTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLS 64
Query: 148 ---PDNGHTMEFNPTTGECVLSISEATPQDEAVY 178
D + P + ++I + D +Y
Sbjct: 65 QPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIY 98
Score = 27.1 bits (60), Expect = 8.1
Identities = 15/94 (15%), Positives = 24/94 (25%), Gaps = 26/94 (27%)
Query: 413 PLKPVIAEAQSPATL------KATVTGRPTPSIC-----WYR---GKEEIL--------- 449
P P + PA L AT T + W R +
Sbjct: 5 PNGPWRSLTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLS 64
Query: 450 ---PDNGHTMEFNPTTGECVLSISEATPQDEAVY 480
D + P + ++I + D +Y
Sbjct: 65 QPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIY 98
>1k5n_A Major histocompatibility complex molecule HLA-B*2; MHC(major
histocompatibility complex), HLA(human leukocyte A
immune system; 1.09A {Homo sapiens} SCOP: b.1.1.2
d.19.1.1 PDB: 1jgd_A 1of2_A 1uxw_A 1w0w_A 3b3i_A* 3bp7_A
3czf_A* 3hcv_A* 3d18_A* 2bss_A 2bsr_A 2a83_A 1jge_A
1hsa_A 1uxs_A 1w0v_A 1ogt_A 2bst_A 3b6s_A* 3bp4_A ...
Length = 276
Score = 28.0 bits (63), Expect = 8.7
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 37 TMTWQKDGTELH 48
T+TWQ+DG +
Sbjct: 214 TLTWQRDGEDQT 225
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 28.0 bits (62), Expect = 8.7
Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 165 LSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAP--TIVRPLQALL 222
+++S +D A+Y ++ + + + T ++ R + P ++ P +A +
Sbjct: 77 MNMSALELEDSAMYFCA--SSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEI 134
Query: 223 VPKDS-TVTLEAEYTGTPTPEVKWFKNGKEIVS 254
K T+ A E+ W+ NGKE+ S
Sbjct: 135 ANKQKATLVCLARGFFPDHVELSWWVNGKEVHS 167
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 27.9 bits (62), Expect = 8.7
Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 25/126 (19%)
Query: 165 LSISEATPQDEAVY-------SVKAVNTFGRAECRANLVLRKATTIDKPRVLEAP--TIV 215
L+++ A P+D + Y FG + T ++ + + P +
Sbjct: 79 LTVTSAHPEDSSFYICSARTSGDFGEQFFGPG--------TRLTVLEDLKNVFPPEVAVF 130
Query: 216 RPLQALLVPKDSTVTLEAEYTG-TPTP-EVKWFKNGKEIVSKDIETKDNVTKLVIKQTTK 273
P +A + TL TG P E+ W+ NGKE V + T +K+
Sbjct: 131 EPSEAEISHTQ-KATLVCLATGFYPDHVELSWWVNGKE-VHSGVCT----DPQPLKEQPA 184
Query: 274 KTTGKY 279
+Y
Sbjct: 185 LNDSRY 190
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 27.0 bits (60), Expect = 9.0
Identities = 16/77 (20%), Positives = 22/77 (28%), Gaps = 18/77 (23%)
Query: 120 QSPATLKATVTGRPT------------PSICWYR---GK--EEILPDNGH-TMEFNPTTG 161
Q+P T T WYR G E+ + G N +
Sbjct: 5 QTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSK 64
Query: 162 ECVLSISEATPQDEAVY 178
L IS+ +D Y
Sbjct: 65 SFSLRISDLRVEDSGTY 81
Score = 27.0 bits (60), Expect = 9.0
Identities = 16/77 (20%), Positives = 22/77 (28%), Gaps = 18/77 (23%)
Query: 422 QSPATLKATVTGRPT------------PSICWYR---GK--EEILPDNGH-TMEFNPTTG 463
Q+P T T WYR G E+ + G N +
Sbjct: 5 QTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSK 64
Query: 464 ECVLSISEATPQDEAVY 480
L IS+ +D Y
Sbjct: 65 SFSLRISDLRVEDSGTY 81
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic,
oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP:
c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Length = 501
Score = 28.3 bits (64), Expect = 9.0
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Query: 150 NGHTME-FNPTTGECVLSISEATPQD--EAVYSVKAVNTFGR------AECRANLVLRKA 200
+G FNP T E + + E +D +AV + + G A R L+ + A
Sbjct: 34 SGKKFPVFNPATEEKLCEVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLA 93
Query: 201 TTIDK 205
I++
Sbjct: 94 DLIER 98
Score = 28.3 bits (64), Expect = 9.1
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 452 NGHTME-FNPTTGECVLSISEATPQD--EAV 479
+G FNP T E + + E +D +AV
Sbjct: 34 SGKKFPVFNPATEEKLCEVEEGDKEDVDKAV 64
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune
system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A
3qib_C 2ial_A 2iam_C 2ian_D 3rug_E* 3axl_A
Length = 205
Score = 27.7 bits (61), Expect = 9.3
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 12/79 (15%)
Query: 437 PSICWYR---GKEEIL---------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 484
++ W+R I + F+ L I +A +D Y A
Sbjct: 32 RAVQWFRKNSRGSLINLFYLASGTKENGRLKSAFDSKERYSTLHIRDAQLEDSGTYFCAA 91
Query: 485 SSTETKIMTDGNRSVLLIS 503
++ T + G + L +
Sbjct: 92 EASNTNKVVFGTGTRLQVL 110
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.128 0.368
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,540,359
Number of extensions: 516496
Number of successful extensions: 4793
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2461
Number of HSP's successfully gapped: 1352
Length of query: 579
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 480
Effective length of database: 3,937,614
Effective search space: 1890054720
Effective search space used: 1890054720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.4 bits)