BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16859
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 20/175 (11%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
P + WL+ + R I+ + +L++ V + G YTC V N++G
Sbjct: 45 PSISWLKNGREF-RGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYT 103
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMK------- 116
+DV+ S +P + P +V LG D+ F ++ +P + W+K
Sbjct: 104 LDVLERSP-----HRPILQAGLPANQTAV-LGSDVEFHCKVYSDAQPHIQWLKHVEVNGS 157
Query: 117 -----GIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG-SDRAF 165
G +T ++E+V VRL L ++ + G Y A N G +++AF
Sbjct: 158 KVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAF 212
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 80 AMFLTRPDTM----MSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRT-MTETVND 134
A + TRP+ M ++V + F AG+P P ++W+K ++ R + +
Sbjct: 11 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 70
Query: 135 YVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
L ++ + G Y V N +GS R T+
Sbjct: 71 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTL 104
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 17/172 (9%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
KP V W R + +++ E H LI++ VT ++A Y R +N+ G A
Sbjct: 33 KPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTA 92
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVAL-----GEDISFSFRLAGSPKPKVTWMKG 117
++V E PA + P T+ + GE +S +G P P +TW KG
Sbjct: 93 SLEV----------EVPAK-IHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKG 141
Query: 118 IKDITTSSRTMTETVNDYVRLTLKRATDDEN-GTYFIVARNIYGSDRAFVTV 168
I + + L + ++ G Y + A+N +G D+ V +
Sbjct: 142 QDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 90 MSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRT--MTETVNDYVRLTLKRATDDE 147
++V + + ++ G PKP V W + K+I + E Y +L + TDD+
Sbjct: 14 LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDD 73
Query: 148 NGTYFIVARNIYGS 161
Y + A N GS
Sbjct: 74 ATVYQVRATNQGGS 87
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 17/172 (9%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
KP V W R + +++ E H LI++ VT ++A Y R +N+ G A
Sbjct: 31 KPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTA 90
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVAL-----GEDISFSFRLAGSPKPKVTWMKG 117
++V E PA + P T+ + GE +S +G P P +TW KG
Sbjct: 91 SLEV----------EVPAK-IHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKG 139
Query: 118 IKDITTSSRTMTETVNDYVRLTLKRATDDEN-GTYFIVARNIYGSDRAFVTV 168
I + + L + ++ G Y + A+N +G D+ V +
Sbjct: 140 QDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 191
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 90 MSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRT--MTETVNDYVRLTLKRATDDE 147
++V + + ++ G PKP V W + K+I + E Y +L + TDD+
Sbjct: 12 LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDD 71
Query: 148 NGTYFIVARNIYGS 161
Y + A N GS
Sbjct: 72 ATVYQVRATNQGGS 85
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 55.5 bits (132), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 8/134 (5%)
Query: 29 NNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDT 88
+N+ TL + G+Y C SN G + A++ + +HE P F +P
Sbjct: 154 HNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTL-------SEHEVPPFFDLKP-V 205
Query: 89 MMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDEN 148
+ +ALGE +F + G+ K+TW K ++I V + LT+ + T +
Sbjct: 206 SVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDA 265
Query: 149 GTYFIVARNIYGSD 162
G Y A N+ G D
Sbjct: 266 GQYTCYASNVAGKD 279
Score = 49.7 bits (117), Expect = 8e-07, Method: Composition-based stats.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 14/154 (9%)
Query: 5 EVIWLRGNTPL-PKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
++ W + N + P + + +E N TL + VT +AG+YTC SN G A+
Sbjct: 228 KITWAKDNREIRPGGNYKMTLVE---NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQ 284
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITT 123
+ V ++P F+ + + V E + ++ GSP+ KV W K +I
Sbjct: 285 LGV----------QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQE 334
Query: 124 SSRTMTETVNDYVRLTLKRATDDENGTYFIVARN 157
SS+ V L + + +++G Y A N
Sbjct: 335 SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 368
Score = 47.8 bits (112), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 10/156 (6%)
Query: 6 VIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVD 65
+ W + +T L +S+P +K ++ NN+ +L+++ V + G+YTC+ N G + A +
Sbjct: 37 IAWYKEHTKL-RSAPAYK-MQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVL- 93
Query: 66 VINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSS 125
+K K R + LG ++F R+ GS +V+W K + + +
Sbjct: 94 -------VIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDA 146
Query: 126 RTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGS 161
T +++ L + + G Y A N G+
Sbjct: 147 NLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGT 182
Score = 44.3 bits (103), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/159 (22%), Positives = 71/159 (44%), Gaps = 15/159 (9%)
Query: 5 EVIWLRGNTPLPKSSP-RFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
+V+W + T + +SS R ++E ++ L + ++ E++G YTC N G +
Sbjct: 322 KVLWYKDETEIQESSKFRMSFVE---SVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTS 378
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITT 123
+ V ++P +F +P + ++ G D+ L G+P +V+W K +++ +
Sbjct: 379 LKV----------KEPPVFRKKPHPVETLK-GADVHLECELQGTPPFQVSWHKDKRELRS 427
Query: 124 SSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSD 162
+ + N + + + G Y A N GSD
Sbjct: 428 GKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSD 466
Score = 40.8 bits (94), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/165 (21%), Positives = 71/165 (43%), Gaps = 14/165 (8%)
Query: 5 EVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARV 64
+V W + L +S ++K I N L ++ + V + + G+Y C+ SN+ G
Sbjct: 415 QVSWHKDKREL-RSGKKYK-IMSENFLTSIHILNVDSADIGEYQCKASNDVGS------- 465
Query: 65 DVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTS 124
+ G++ + P F+ + + +V +GE++ + G+ V W K +I
Sbjct: 466 ---DTCVGSITLKAPPRFVKKLSDISTV-VGEEVQLQATIEGAEPISVAWFKDKGEIVRE 521
Query: 125 SRTMTETVNDYV-RLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
S + + ++ + L RA G Y +N G+ F T+
Sbjct: 522 SDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATL 566
Score = 40.4 bits (93), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 6 VIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVD 65
V W + + + S +I S N+ TL S AGKYTC++ NE G E FA +
Sbjct: 509 VAWFKDKGEIVRESDNI-WISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLS 567
Query: 66 VI 67
V+
Sbjct: 568 VL 569
Score = 32.3 bits (72), Expect = 0.12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 35/80 (43%)
Query: 82 FLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLK 141
+ P + A+GE I+ ++ G+P+ ++ W K + ++ + N+ L +
Sbjct: 7 YFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVIN 66
Query: 142 RATDDENGTYFIVARNIYGS 161
+ + G Y A N G+
Sbjct: 67 KVDHSDVGEYTCKAENSVGA 86
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 17/172 (9%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
KP V W R + +++ E H LI++ VT ++A Y R +N+ G A
Sbjct: 33 KPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTA 92
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVAL-----GEDISFSFRLAGSPKPKVTWMKG 117
++V E PA + P T+ + GE +S +G P P +TW KG
Sbjct: 93 SLEV----------EVPAK-IHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKG 141
Query: 118 IKDITTSSRTMTETVNDYVRLTLKRATDDEN-GTYFIVARNIYGSDRAFVTV 168
I + + L + ++ G Y + A+N +G D+ V +
Sbjct: 142 QDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 90 MSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRT--MTETVNDYVRLTLKRATDDE 147
++V + + ++ G PKP V W + K+I + E Y +L + TDD+
Sbjct: 14 LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDD 73
Query: 148 NGTYFIVARNIYGS 161
Y + A N GS
Sbjct: 74 ATVYQVRATNQGGS 87
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 18/164 (10%)
Query: 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET 60
Y P WLRG + S ++ + SN L++S VT +++G YTC V+ +
Sbjct: 248 YPPPSFTWLRGEEVIQLRSKKYSLLGGSN----LLISNVTDDDSGTYTCVVTYKNENISA 303
Query: 61 FARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKD 120
A + V+ P FL P + + DI F ++G P P V WMK D
Sbjct: 304 SAELTVL----------VPPWFLNHPSNLYAYE-SMDIEFECAVSGKPVPTVNWMKN-GD 351
Query: 121 ITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRA 164
+ S +R+ L DE G Y VA N G+ ++
Sbjct: 352 VVIPSDYFQIVGGSNLRI-LGVVKSDE-GFYQCVAENEAGNAQS 393
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 33 TLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSV 92
L +S + ++G Y C N T T +V +S + + FL RP ++++
Sbjct: 178 ALQISRLQPGDSGVYRCSARNP-ASTRTGNEAEVRILSDPGLHRQ--LYFLQRPSNVIAI 234
Query: 93 ALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYF 152
G+D ++G P P TW++G + I S+ + L + TDD++GTY
Sbjct: 235 E-GKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGS--NLLISNVTDDDSGTYT 291
Query: 153 IV 154
V
Sbjct: 292 CV 293
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 79 PAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRL 138
P FL++ +++ + +G+ + + G P P + W K +D+ V L
Sbjct: 121 PLRFLSQTESITAF-MGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGAL 179
Query: 139 TLKRATDDENGTYFIVARN 157
+ R ++G Y ARN
Sbjct: 180 QISRLQPGDSGVYRCSARN 198
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 4 PEVIWLR-GNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P V W++ G+ +P S F+ + SN L + GV + G Y C NE G ++ A
Sbjct: 342 PTVNWMKNGDVVIP--SDYFQIVGGSN----LRILGVVKSDEGFYQCVAENEAGNAQSSA 395
Query: 63 RVDV 66
++ V
Sbjct: 396 QLIV 399
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 64/167 (38%), Gaps = 13/167 (7%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
P++ W R L +S ++K D HTL + E+ G YTC +NE G ET
Sbjct: 37 PDIKWYRFGKELIQSR-KYKMSSDGRT-HTLTVMTEEQEDEGVYTCIATNEVGEVET--- 91
Query: 64 VDVINVSSGAVKHEKPAMFLTRP-DTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
SS + P P A+G + G P P +TW G K +
Sbjct: 92 ------SSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQ 145
Query: 123 TSSRTMTETVNDYVRLTLKRATDDEN-GTYFIVARNIYGSDRAFVTV 168
S E Y L +K + G Y + N++G+ A + V
Sbjct: 146 NSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDV 192
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 72 GAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTET 131
GA+ E P + D ++ LGE S ++ G P P + W + K++ S + +
Sbjct: 1 GAMSGEAPGIRKEMKD--VTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSS 58
Query: 132 VNDYVRLTLKRATDDENGTYFIVARNIYG 160
LT+ ++ G Y +A N G
Sbjct: 59 DGRTHTLTVMTEEQEDEGVYTCIATNEVG 87
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAE-EAGKYTCRVSNEYGYTETFA 62
P + W G L S IE++ + L++ V + AGKY ++SN +G +
Sbjct: 133 PAMTWFHGQKLLQNSENIT--IENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAIL 190
Query: 63 RVDV 66
V++
Sbjct: 191 DVEI 194
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 33 TLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSV 92
++I+ V + G YTC V NEYG ++DV+ S +P + P +V
Sbjct: 74 SIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSP-----HRPILQAGLPAN-KTV 127
Query: 93 ALGEDISFSFRLAGSPKPKVTWMKGIK 119
ALG ++ F ++ P+P + W+K I+
Sbjct: 128 ALGSNVEFMCKVYSDPQPHIQWLKHIE 154
Score = 30.0 bits (66), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 80 AMFLTRPDTM----MSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDY 135
A + T P+ M +V + + F +G+P P + W+K K+ R V
Sbjct: 12 APYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYA 71
Query: 136 V-RLTLKRATDDENGTYFIVARNIYGS 161
+ + + G Y + N YGS
Sbjct: 72 TWSIIMDSVVPSDKGNYTCIVENEYGS 98
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 3 KPEVIWLR-----GNTPLPKSSPRFKYIEDSN------NLHTLILSGVTAEEAGKYTCRV 51
+P + WL+ G+ P + P + ++ + + L L V+ E+AG+YTC
Sbjct: 144 QPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLA 203
Query: 52 SNEYGYTETFARVDVI 67
N G + A + V+
Sbjct: 204 GNSIGLSHHSAWLTVL 219
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 33 TLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSV 92
++I+ V + G YTC V NEYG ++DV+ S +P + P +V
Sbjct: 74 SIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSP-----HRPILQAGLPAN-KTV 127
Query: 93 ALGEDISFSFRLAGSPKPKVTWMKGIK 119
ALG ++ F ++ P+P + W+K I+
Sbjct: 128 ALGSNVEFMCKVYSDPQPHIQWLKHIE 154
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 80 AMFLTRPDTM----MSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDY 135
A + T P+ M +V + + F +G+P+P + W+K K+ R V
Sbjct: 12 APYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYA 71
Query: 136 V-RLTLKRATDDENGTYFIVARNIYGS 161
+ + + G Y + N YGS
Sbjct: 72 TWSIIMDSVVPSDKGNYTCIVENEYGS 98
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 3 KPEVIWLR-----GNTPLPKSSPRFKYIEDSN------NLHTLILSGVTAEEAGKYTCRV 51
+P + WL+ G+ P + P + ++ + + L L V+ E+AG+YTC
Sbjct: 144 QPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLA 203
Query: 52 SNEYGYTETFARVDVI 67
N G + A + V+
Sbjct: 204 GNSIGLSHHSAWLTVL 219
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 33 TLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSV 92
++I+ V + G YTC V NEYG ++DV+ S +P + P +V
Sbjct: 75 SIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSP-----HRPILQAGLPAN-KTV 128
Query: 93 ALGEDISFSFRLAGSPKPKVTWMKGIK 119
ALG ++ F ++ P+P + W+K I+
Sbjct: 129 ALGSNVEFMCKVYSDPQPHIQWLKHIE 155
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 80 AMFLTRPDTM----MSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDY 135
A + T P+ M +V + + F +G+P+P + W+K K+ R V
Sbjct: 13 APYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYA 72
Query: 136 V-RLTLKRATDDENGTYFIVARNIYGS 161
+ + + G Y + N YGS
Sbjct: 73 TWSIIMDSVVPSDKGNYTCIVENEYGS 99
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 3 KPEVIWLR-----GNTPLPKSSPRFKYIEDSN------NLHTLILSGVTAEEAGKYTCRV 51
+P + WL+ G+ P + P + ++ + + L L V+ E+AG+YTC
Sbjct: 145 QPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLA 204
Query: 52 SNEYGYTETFARVDVI 67
N G + A + V+
Sbjct: 205 GNSIGLSHHSAWLTVL 220
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 14/154 (9%)
Query: 5 EVIWLRGNTPL-PKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
++ W + N + P + + +E N TL + VT +AG+YTC SN G A+
Sbjct: 36 KITWAKDNREIRPGGNYKMTLVE---NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQ 92
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITT 123
+ V ++P F+ + + V E + ++ GSP+ KV W K +I
Sbjct: 93 LGV----------QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQE 142
Query: 124 SSRTMTETVNDYVRLTLKRATDDENGTYFIVARN 157
SS+ V L + + +++G Y A N
Sbjct: 143 SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 70/158 (44%), Gaps = 15/158 (9%)
Query: 5 EVIWLRGNTPLPKSSP-RFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
+V+W + T + +SS R ++E ++ L + ++ E++G YTC N G +
Sbjct: 130 KVLWYKDETEIQESSKFRMSFVE---SVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTS 186
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITT 123
+ V ++P +F +P + ++ G D+ L G+P +V+W K +++ +
Sbjct: 187 LKV----------KEPPVFRKKPHPVETLK-GADVHLECELQGTPPFQVSWHKDKRELRS 235
Query: 124 SSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGS 161
+ + N + + + G Y A N GS
Sbjct: 236 GKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS 273
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 79 PAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRL 138
P F +P + +ALGE +F + G+ K+TW K ++I V + L
Sbjct: 5 PPFFDLKP-VSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 139 TLKRATDDENGTYFIVARNIYGSD 162
T+ + T + G Y A N+ G D
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKD 87
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 14/154 (9%)
Query: 5 EVIWLRGNTPL-PKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
++ W + N + P + + +E N TL + VT +AG+YTC SN G A+
Sbjct: 36 KITWAKDNREIRPGGNYKMTLVE---NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQ 92
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITT 123
+ V + P F+ + + V E + ++ GSP+ KV W K +I
Sbjct: 93 LGV----------QAPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQE 142
Query: 124 SSRTMTETVNDYVRLTLKRATDDENGTYFIVARN 157
SS+ V L + + +++G Y A N
Sbjct: 143 SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 70/158 (44%), Gaps = 15/158 (9%)
Query: 5 EVIWLRGNTPLPKSSP-RFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
+V+W + T + +SS R ++E ++ L + ++ E++G YTC N G +
Sbjct: 130 KVLWYKDETEIQESSKFRMSFVE---SVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTS 186
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITT 123
+ V ++P +F +P + ++ G D+ L G+P +V+W K +++ +
Sbjct: 187 LKV----------KEPPVFRKKPHPVETLK-GADVHLECELQGTPPFQVSWHKDKRELRS 235
Query: 124 SSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGS 161
+ + N + + + G Y A N GS
Sbjct: 236 GKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS 273
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 79 PAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRL 138
P F +P + +ALGE +F + G+ K+TW K ++I V + L
Sbjct: 5 PPFFDLKP-VSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 139 TLKRATDDENGTYFIVARNIYGSD 162
T+ + T + G Y A N+ G D
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKD 87
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 17/136 (12%)
Query: 34 LILSGVTAEEAGKYTCRVSNEYGYTETFA-RVDVINVSSGAVKHEKPAMFLTRPDTMMSV 92
L+ E+ G YTC V N G + + ++ V++ A K+E+ +P+ ++ V
Sbjct: 272 LLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS----APKYEQ------KPEKVIVV 321
Query: 93 ALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYF 152
G+D++ ++ G P P V W K ++ T+T++ L +K + + G Y
Sbjct: 322 KQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDS-----GLVIKGVKNGDKGYYG 376
Query: 153 IVARNIYGSDRAFVTV 168
A N +G D+ F T+
Sbjct: 377 CRATNEHG-DKYFETL 391
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 10/158 (6%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
PEV W R + S+ I S+ L + VT +G+Y+ + +N G + A
Sbjct: 35 PEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAE 94
Query: 64 VDVINVSSGAVKHE-KPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
+ VK E P F+ R + M+V G + R+ G P P V + + +I
Sbjct: 95 L--------LVKAETAPPNFVQRLQS-MTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQ 145
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG 160
+S D L + A +++GTY + A N G
Sbjct: 146 SSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVG 183
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 83 LTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTET--VNDYVRLTL 140
T+P + V G +F ++G P P+V+W + + I+TS+ + + +LT+
Sbjct: 8 FTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTI 67
Query: 141 KRATDDENGTYFIVARNIYGSDRA 164
T +G Y + A N GS +A
Sbjct: 68 PAVTKANSGRYSLKATN--GSGQA 89
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 10/158 (6%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
PEV W R + S+ I S+ L + VT +G+Y+ + +N G + A
Sbjct: 35 PEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAE 94
Query: 64 VDVINVSSGAVKHE-KPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
+ VK E P F+ R + M+V G + R+ G P P V + + +I
Sbjct: 95 L--------LVKAETAPPNFVQRLQS-MTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQ 145
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG 160
+S D L + A +++GTY + A N G
Sbjct: 146 SSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVG 183
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 83 LTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTET--VNDYVRLTL 140
T+P + V G +F ++G P P+V+W + + I+TS+ + + +LT+
Sbjct: 8 FTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTI 67
Query: 141 KRATDDENGTYFIVARNIYGSDRA 164
T +G Y + A N GS +A
Sbjct: 68 PAVTKANSGRYSLKATN--GSGQA 89
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
P + WL+ K R + N +LI+ V + G YTC V NEYG
Sbjct: 41 PTMRWLKNGKEF-KQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 99
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIK 119
+DV+ S +P + P +V +G D+ F ++ +P + W+K ++
Sbjct: 100 LDVVERSR-----HRPILQAGLPANASTV-VGGDVEFVCKVYSDAQPHIQWIKHVE 149
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 89 MMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETV-NDYVRLTLKRATDDE 147
+ +V + F G+P P + W+K K+ R V N + L ++ +
Sbjct: 20 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSD 79
Query: 148 NGTYFIVARNIYGS 161
G Y V N YGS
Sbjct: 80 KGNYTCVVENEYGS 93
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 11/77 (14%)
Query: 2 VKPEVIWLR-----GNTPLPKSSPRFKYIEDSN------NLHTLILSGVTAEEAGKYTCR 50
+P + W++ G+ P P K ++ + + L + VT E+AG+YTC
Sbjct: 138 AQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCL 197
Query: 51 VSNEYGYTETFARVDVI 67
N G + A + V+
Sbjct: 198 AGNSIGISFHSAWLTVL 214
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
P + WL+ K R + N +LI+ V + G YTC V NEYG
Sbjct: 39 PTMRWLKNGKEF-KQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 97
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIK 119
+DV+ S +P + P +V +G D+ F ++ +P + W+K ++
Sbjct: 98 LDVVERSR-----HRPILQAGLPANASTV-VGGDVEFVCKVYSDAQPHIQWIKHVE 147
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 89 MMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETV-NDYVRLTLKRATDDE 147
+ +V + F G+P P + W+K K+ R V N + L ++ +
Sbjct: 18 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSD 77
Query: 148 NGTYFIVARNIYGS 161
G Y V N YGS
Sbjct: 78 KGNYTCVVENEYGS 91
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 11/77 (14%)
Query: 2 VKPEVIWLR-----GNTPLPKSSPRFKYIEDSN------NLHTLILSGVTAEEAGKYTCR 50
+P + W++ G+ P P K ++ + + L + VT E+AG+YTC
Sbjct: 136 AQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCL 195
Query: 51 VSNEYGYTETFARVDVI 67
N G + A + V+
Sbjct: 196 AGNSIGISFHSAWLTVL 212
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
P + WL+ K R + N +LI+ V + G YTC V NEYG
Sbjct: 41 PTMRWLKNGKEF-KQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 99
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIK 119
+DV+ S +P + P +V +G D+ F ++ +P + W+K ++
Sbjct: 100 LDVVERSP-----HRPILQAGLPANASTV-VGGDVEFVCKVYSDAQPHIQWIKHVE 149
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 89 MMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETV-NDYVRLTLKRATDDE 147
+ +V + F G+P P + W+K K+ R V N + L ++ +
Sbjct: 20 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSD 79
Query: 148 NGTYFIVARNIYGS 161
G Y V N YGS
Sbjct: 80 KGNYTCVVENEYGS 93
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 11/77 (14%)
Query: 2 VKPEVIWLR-----GNTPLPKSSPRFKYIEDSN------NLHTLILSGVTAEEAGKYTCR 50
+P + W++ G+ P P K ++ + + L + VT E+AG+YTC
Sbjct: 138 AQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCL 197
Query: 51 VSNEYGYTETFARVDVI 67
N G + A + V+
Sbjct: 198 AGNSIGISFHSAWLTVL 214
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
P + WL+ K R + N +LI+ V + G YTC V NEYG
Sbjct: 49 PTMRWLKNGKEF-KQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 107
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIK 119
+DV+ S +P + P +V +G D+ F ++ +P + W+K ++
Sbjct: 108 LDVVERSR-----HRPILQAGLPANASTV-VGGDVEFVCKVYSDAQPHIQWIKHVE 157
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 89 MMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETV-NDYVRLTLKRATDDE 147
+ +V + F G+P P + W+K K+ R V N + L ++ +
Sbjct: 28 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSD 87
Query: 148 NGTYFIVARNIYGS 161
G Y V N YGS
Sbjct: 88 KGNYTCVVENEYGS 101
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 2 VKPEVIWLR-----GNTPLPKSSPRFKYIE----DSNNLHTLILSGVTAEEAGKYTCRVS 52
+P + W++ G+ P P K ++ +S+N L L VT +AG+Y C+VS
Sbjct: 146 AQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVS 205
Query: 53 NEYGYTETFARVDVI 67
N G A + V+
Sbjct: 206 NYIGQANQSAWLTVL 220
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
P + WL+ K R + N +LI+ V + G YTC V NEYG
Sbjct: 40 PTMRWLKNGKEF-KQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 98
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIK 119
+DV+ S +P + P +V +G D+ F ++ +P + W+K ++
Sbjct: 99 LDVVERSP-----HRPILQAGLPANASTV-VGGDVEFVCKVYSDAQPHIQWIKHVE 148
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 89 MMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETV-NDYVRLTLKRATDDE 147
+ +V + F G+P P + W+K K+ R V N + L ++ +
Sbjct: 19 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSD 78
Query: 148 NGTYFIVARNIYGS 161
G Y V N YGS
Sbjct: 79 KGNYTCVVENEYGS 92
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Query: 3 KPEVIWLR-----GNTPLPKSSPRFKYIEDSN------NLHTLILSGVTAEEAGKYTCRV 51
+P + W++ G+ P P K ++ + + L + VT E+AG+YTC
Sbjct: 138 QPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLA 197
Query: 52 SNEYGYTETFARVDVI 67
N G + A + V+
Sbjct: 198 GNSIGISFHSAWLTVL 213
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
P + WL+ K R + N +LI+ V + G YTC V NEYG
Sbjct: 49 PTMRWLKNGKEF-KQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 107
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIK 119
+DV+ S +P + P +V +G D+ F ++ +P + W+K ++
Sbjct: 108 LDVVERSP-----HRPILQAGLPANASTV-VGGDVEFVCKVYSDAQPHIQWIKHVE 157
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 2 VKPEVIWLR-----GNTPLPKSSPRFKYIE----DSNNLHTLILSGVTAEEAGKYTCRVS 52
+P + W++ G+ P P K ++ +S+N L L VT +AG+Y C+VS
Sbjct: 146 AQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVS 205
Query: 53 NEYGYTETFARVDVI 67
N G A + V+
Sbjct: 206 NYIGQANQSAWLTVL 220
Score = 33.9 bits (76), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 98 ISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETV-NDYVRLTLKRATDDENGTYFIVAR 156
+ F G+P P + W+K K+ R V N + L ++ + G Y V
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 96
Query: 157 NIYGS 161
N YGS
Sbjct: 97 NEYGS 101
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 79 PAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRL 138
PA+ + + + GE+++FS R +GSP+P ++W + K I + + + + N L
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN--TEL 60
Query: 139 TLKRATDDENGTYFIVARNIYGSD--RAFVTV 168
T++ + + G Y A N G D +AF+ V
Sbjct: 61 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 92
Score = 32.7 bits (73), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 16/120 (13%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+P + W R + ++ KYI +N L + + + G Y CR +N+ G E A
Sbjct: 33 EPAISWFRNGKLIEENE---KYILKGSNTE-LTVRNIINSDGGPYVCRATNKAGEDEKQA 88
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
+ V V ++ + + T++ A GE P P++TW + + T
Sbjct: 89 FLQVF-VQPHIIQLKNETTYENGQVTLVCDAEGE-----------PIPEITWKRAVDGFT 136
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
P + WL+ + R I+ + +L++ V + G YTC V N++G
Sbjct: 153 PSISWLKNGREF-RGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYT 211
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIK 119
+DV+ S +P + P +V LG D+ F ++ +P + W+K ++
Sbjct: 212 LDVLERSP-----HRPILQAGLPANQTAV-LGSDVEFHCKVYSDAQPHIQWLKHVE 261
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 80 AMFLTRPDTM----MSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRT-MTETVND 134
A + TRP+ M ++V + F AG+P P ++W+K ++ R + +
Sbjct: 119 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 178
Query: 135 YVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
L ++ + G Y V N +GS R T+
Sbjct: 179 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTL 212
Score = 33.1 bits (74), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 3 KPEVIWLR-----GNTPLPKSSPRFKYIEDSN------NLHTLILSGVTAEEAGKYTCRV 51
+P + WL+ G+ P +P ++ + L L L VT E+AG+YTC
Sbjct: 251 QPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLA 310
Query: 52 SNEYGYTETFARVDVI 67
N G++ A + V+
Sbjct: 311 GNSIGFSHHSAWLVVL 326
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 79 PAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRL 138
PA+ + + + GE+++FS R +GSP+P ++W + K I + + + + N L
Sbjct: 97 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN--TEL 154
Query: 139 TLKRATDDENGTYFIVARNIYGSD--RAFVTV 168
T++ + + G Y A N G D +AF+ V
Sbjct: 155 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 95 GEDISFSFRLAGSPKPKVTWMKGIKDITTSS 125
GED R++ SP P V+W+ +++TT S
Sbjct: 17 GEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS 47
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 79 PAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRL 138
PA+ + + + GE+++FS R +GSP+P ++W + K I + + + + N L
Sbjct: 193 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN--TEL 250
Query: 139 TLKRATDDENGTYFIVARNIYGSD--RAFVTV 168
T++ + + G Y A N G D +AF+ V
Sbjct: 251 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 34 LILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVA 93
L + E+AG Y C+ ++ G T+ V I + P F
Sbjct: 62 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEF----------K 111
Query: 94 LGEDISFSFRLAGSPKPKVTWMKGIKDITTSS 125
GED R++ SP P V+W+ +++TT S
Sbjct: 112 QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS 143
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 18/162 (11%)
Query: 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET 60
Y +PE+ W R + R+ E N L + V + G Y C +N G
Sbjct: 34 YPQPEISWTRNKILIKLFDTRYSIRE---NGQLLTILSVEDSDDGIYCCTANNGVG---- 86
Query: 61 FARVDVINVSSGAVKHE-KPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIK 119
V+ S GA++ + KP +TRP + + G G+PKP V+W+KG
Sbjct: 87 -GAVE----SCGALQVKMKPK--ITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDS 139
Query: 120 DITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGS 161
+ +SR V + L + ++ G Y VA+N G+
Sbjct: 140 ALRENSRI---AVLESGSLRIHNVQKEDAGQYRCVAKNSLGT 178
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 16/112 (14%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
P++ W + LP +F+ N L ++ V+ E++G+Y C SN+ G
Sbjct: 252 PDIAWYKKGGDLPSDKAKFE-----NFNKALRITNVSEEDSGEYFCLASNKMGSIR---- 302
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWM 115
I+V A + +L P ++ +A GED R G+PKP V WM
Sbjct: 303 -HTISVRVKAAPY-----WLDEPKNLI-LAPGEDGRLVCRANGNPKPTVQWM 347
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
KP V W+ PL +S+P E + + T+I Y C SNE+GY A
Sbjct: 341 KPTVQWMVNGEPL-QSAPPNPNREVAGD--TIIFRDTQISSRAVYQCNTSNEHGYLLANA 397
Query: 63 RVDVINV 69
V V++V
Sbjct: 398 FVSVLDV 404
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
P WL+ K R + N +LI V + G YTC V NEYG
Sbjct: 41 PTXRWLKNGKEF-KQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYH 99
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIK 119
+DV+ S +P + P +V +G D+ F ++ +P + W+K ++
Sbjct: 100 LDVVERSP-----HRPILQAGLPANASTV-VGGDVEFVCKVYSDAQPHIQWIKHVE 149
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 89 MMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETV-NDYVRLTLKRATDDE 147
+ +V + F G+P P W+K K+ R V N + L + +
Sbjct: 20 LHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSD 79
Query: 148 NGTYFIVARNIYGS 161
G Y V N YGS
Sbjct: 80 KGNYTCVVENEYGS 93
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Query: 3 KPEVIWLR-----GNTPLPKSSPRFKYIEDSN------NLHTLILSGVTAEEAGKYTCRV 51
+P + W++ G+ P P K ++ + + L + VT E+AG+YTC
Sbjct: 139 QPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLA 198
Query: 52 SNEYGYTETFARVDVI 67
N G + A + V+
Sbjct: 199 GNSIGISFHSAWLTVL 214
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
P WL+ K R + N +LI V + G YTC V NEYG
Sbjct: 48 PTXRWLKNGKEF-KQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYH 106
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIK 119
+DV+ S +P + P +V +G D+ F ++ +P + W+K ++
Sbjct: 107 LDVVERSP-----HRPILQAGLPANASTV-VGGDVEFVCKVYSDAQPHIQWIKHVE 156
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 2 VKPEVIWLR-----GNTPLPKSSPRFKYIE----DSNNLHTLILSGVTAEEAGKYTCRVS 52
+P + W++ G+ P P K ++ +S+N L L VT +AG+Y C+VS
Sbjct: 145 AQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVS 204
Query: 53 NEYGYTETFARVDVI 67
N G A + V+
Sbjct: 205 NYIGQANQSAWLTVL 219
Score = 33.5 bits (75), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 89 MMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETV-NDYVRLTLKRATDDE 147
+ +V + F G+P P W+K K+ R V N + L + +
Sbjct: 27 LHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSD 86
Query: 148 NGTYFIVARNIYGS 161
G Y V N YGS
Sbjct: 87 KGNYTCVVENEYGS 100
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
P + WL+ K R + N +LI+ V + G YTC V NEYG
Sbjct: 41 PTMRWLKNGKEF-KQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 99
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIK 119
+DV+ +P + P +V +G D+ F ++ +P + W+K ++
Sbjct: 100 LDVVERWP-----HRPILQAGLPANASTV-VGGDVEFVCKVYSDAQPHIQWIKHVE 149
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 89 MMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETV-NDYVRLTLKRATDDE 147
+ +V + F G+P P + W+K K+ R V N + L ++ +
Sbjct: 20 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSD 79
Query: 148 NGTYFIVARNIYGS 161
G Y V N YGS
Sbjct: 80 KGNYTCVVENEYGS 93
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Query: 3 KPEVIWLR-----GNTPLPKSSPRFKYIEDSN------NLHTLILSGVTAEEAGKYTCRV 51
+P + W++ G+ P P K ++ + + L + VT E+AG+YTC
Sbjct: 139 QPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLA 198
Query: 52 SNEYGYTETFARVDVI 67
N G + A + V+
Sbjct: 199 GNSIGISFHSAWLTVL 214
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 95 GEDISFSFRLAGSPKPKVTWMKGIKDITTSSR--TMTETVNDYVRLTLKRATDDENGTYF 152
G ++F+ R+AG+PKPK+ W K K I+ S T+ ++ L +T D++G Y
Sbjct: 23 GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYT 82
Query: 153 IVARNIYG 160
I+A N G
Sbjct: 83 IMAANPQG 90
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
KP++ W + + S + D + +L + T ++ G YT +N G
Sbjct: 37 KPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTG 96
Query: 63 RVDVINVSSG 72
R+ V V+SG
Sbjct: 97 RLMVQAVNSG 106
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 95 GEDISFSFRLAGSPKPKVTWMKGIKDITTSSR--TMTETVNDYVRLTLKRATDDENGTYF 152
G ++F+ R+AG+PKPK+ W K K I+ S T+ ++ L +T D++G Y
Sbjct: 22 GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYT 81
Query: 153 IVARNIYG 160
I+A N G
Sbjct: 82 IMAANPQG 89
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 28/69 (40%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
KP++ W + + S + D + +L + T ++ G YT +N G
Sbjct: 36 KPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRVSCTG 95
Query: 63 RVDVINVSS 71
R+ V V+
Sbjct: 96 RLMVQAVNQ 104
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 75 KHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTE-TVN 133
+ E F+ +P V G+ +F R+ S P VTW K +++ S + M N
Sbjct: 478 RSEAQPRFIVKP-YGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGN 536
Query: 134 DYVRLTLKRATDDENGTYFIVARNIYGSDRAFV 166
DY LT+ R D+ G Y + A+N YG+ V
Sbjct: 537 DY-GLTINRVKGDDKGEYTVRAKNSYGTKEEIV 568
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSN-NLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P V W + + L +S KY++ N N + L ++ V ++ G+YT R N YG E
Sbjct: 512 PVVTWHKDDRELKQS---VKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIV 568
Query: 63 RVDV 66
++V
Sbjct: 569 FLNV 572
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 2 VKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
V E IWL+ N P P + + KY+ + + G T + T +S + Y E +
Sbjct: 54 VTGEQIWLQINEPTP--NDKGKYVME-------LFDGKTGHQK---TVDLSGQ-AYDEAY 100
Query: 62 ARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDI 121
A + A+ + A L ++++ G+ ++ + + G P P+V+W+K K +
Sbjct: 101 AEFQ--RLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKAL 158
Query: 122 T-TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
T + T+ + ++G Y +V +N YGS+ + TV
Sbjct: 159 AQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTV 206
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 77 EKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTE-TVNDY 135
E F+ +P V G+ +F R+ S P VTW K +++ S + M NDY
Sbjct: 374 EAQPRFIVKP-YGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDY 432
Query: 136 VRLTLKRATDDENGTYFIVARNIYGSDRAFV 166
LT+ R D+ G Y + A+N YG+ V
Sbjct: 433 -GLTINRVKGDDKGEYTVRAKNSYGTKEEIV 462
Score = 32.7 bits (73), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSN-NLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P V W + + L +S KY++ N N + L ++ V ++ G+YT R N YG E
Sbjct: 406 PVVTWHKDDRELKQS---VKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIV 462
Query: 63 RVDVINVSSGAVKHEKPAMF 82
++V +H +P F
Sbjct: 463 FLNV-------TRHSEPLKF 475
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 2 VKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
V E IWL+ N P P + + KY+ + + G T + T +S + Y E +
Sbjct: 159 VTGEQIWLQINEPTP--NDKGKYVME-------LFDGKTGHQK---TVDLSGQ-AYDEAY 205
Query: 62 ARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDI 121
A + A+ + A L ++++ G+ ++ + + G P P+V+W+K K +
Sbjct: 206 AEFQ--RLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKAL 263
Query: 122 TTSSRT-MTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ + T+ + ++G Y +V +N YGS+ + TV
Sbjct: 264 ASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTV 311
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 77 EKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMT----ETV 132
E P +F+ +P + V+ G SF + G PKP+VTW K K + S R T E+
Sbjct: 4 ESPPVFIKKPVDQIGVS-GGVASFVCQATGDPKPRVTWNKKGKKV-NSQRFETIEFDESA 61
Query: 133 NDYVRLTLKRATDDENGTYFIVARNIYG 160
+R+ R DEN Y VA+N +G
Sbjct: 62 GAVLRIQPLRTPRDEN-IYECVAQNPHG 88
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 32/172 (18%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIE--DSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET 60
KP V W + + +S RF+ IE +S I T + Y C N +G
Sbjct: 35 KPRVTWNKKGKKV--NSQRFETIEFDESAGAVLRIQPLRTPRDENIYECVAQNPHGEVTV 92
Query: 61 FARVDVI----------NVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKP 110
A++ V+ N+ G + + TR TM+ A +G+P P
Sbjct: 93 HAKLTVLREDQLPPGFPNIDMGP---QLKVVERTRTATMLCAA-----------SGNPDP 138
Query: 111 KVTWMKGIK--DITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG 160
++TW K D +TS+ + + + +++ TD G Y VA N G
Sbjct: 139 EITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEETD--QGKYECVASNSAG 188
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 90 MSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETV-NDYVRLTLKRATDDEN 148
SV G+D+ S R+ G PKP V+W++ + + R E RL + A +
Sbjct: 15 QSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDA 74
Query: 149 GTYFIVARNIYGS 161
G Y A N YG+
Sbjct: 75 GFYTCKAVNEYGA 87
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
KP V WLR P+ RF E L L + +AG YTC+ NEYG + A
Sbjct: 34 KPVVSWLRNRQPVRPDQRRFAE-EAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEA 92
Query: 63 RVDV 66
R++V
Sbjct: 93 RLEV 96
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 67/163 (41%), Gaps = 32/163 (19%)
Query: 4 PEVIWLRGN-TPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P ++W R + P+ + + R K SN + L + E+AG Y C N G
Sbjct: 234 PTILWRRADGKPIARKARRHK----SNGI--LEIPNFQQEDAGSYECVAENSRGK----- 282
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTM-----MSVALGEDISFSFRLAGSPKPKVTWMKG 117
NV+ G + F +P+ + + VA+ E + + + G PKP W+K
Sbjct: 283 -----NVAKGQL------TFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKN 331
Query: 118 IKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG 160
+ T R E + +T+ +D G Y VA N +G
Sbjct: 332 GDPLLTRDRIQIE--QGTLNITIVNLSDA--GMYQCVAENKHG 370
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 63/158 (39%), Gaps = 9/158 (5%)
Query: 8 WLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA-RVDV 66
W+ P + + RF E N L ++ V + G YTC V+N + +
Sbjct: 136 WIFNEYPSYQDNRRFVSQETGN----LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPL 191
Query: 67 INVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSR 126
I + G + +P + + P+T + G + G+P P + W + D +R
Sbjct: 192 ILRNDGVMGEYEPKIEVQFPET-VPAEKGTTVKLECFALGNPVPTILWRRA--DGKPIAR 248
Query: 127 TMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRA 164
++ + L + ++ G+Y VA N G + A
Sbjct: 249 KARRHKSNGI-LEIPNFQQEDAGSYECVAENSRGKNVA 285
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 81 MFLTRPDTMMSVALGED--ISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRL 138
+F+ P +M E+ + S + G+PKP + W D+ V+ + +
Sbjct: 6 VFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLI 65
Query: 139 TLKRATDDENGTYFIVARNIYGS 161
T D GTY +A N +G+
Sbjct: 66 NNPNKTQDA-GTYQCIATNSFGT 87
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
KP WL+ PL + R + IE TL ++ V +AG Y C N++G + A
Sbjct: 323 KPTYRWLKNGDPL-LTRDRIQ-IEQG----TLNITIVNLSDAGMYQCVAENKHGVIFSSA 376
Query: 63 RVDVI 67
+ VI
Sbjct: 377 ELSVI 381
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 67/163 (41%), Gaps = 32/163 (19%)
Query: 4 PEVIWLRGN-TPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P ++W R + P+ + + R K SN + L + E+AG Y C N G
Sbjct: 235 PTILWRRADGKPIARKARRHK----SNGI--LEIPNFQQEDAGSYECVAENSRGK----- 283
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTM-----MSVALGEDISFSFRLAGSPKPKVTWMKG 117
NV+ G + F +P+ + + VA+ E + + + G PKP W+K
Sbjct: 284 -----NVAKGQL------TFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKN 332
Query: 118 IKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG 160
+ T R E + +T+ +D G Y VA N +G
Sbjct: 333 GDPLLTRDRIQIE--QGTLNITIVNLSDA--GMYQCVAENKHG 371
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 63/158 (39%), Gaps = 9/158 (5%)
Query: 8 WLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA-RVDV 66
W+ P + + RF E N L ++ V + G YTC V+N + +
Sbjct: 137 WIFNEYPSYQDNRRFVSQETGN----LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPL 192
Query: 67 INVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSR 126
I + G + +P + + P+T + G + G+P P + W + D +R
Sbjct: 193 ILRNDGVMGEYEPKIEVQFPET-VPAEKGTTVKLECFALGNPVPTILWRRA--DGKPIAR 249
Query: 127 TMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRA 164
++ + L + ++ G+Y VA N G + A
Sbjct: 250 KARRHKSNGI-LEIPNFQQEDAGSYECVAENSRGKNVA 286
Score = 30.0 bits (66), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 81 MFLTRPDTMMSVALGED--ISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRL 138
+F+ P +M E+ + S + G+PKP + W D+ V+ + +
Sbjct: 7 VFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLI 66
Query: 139 TLKRATDDENGTYFIVARNIYGS 161
T D GTY +A N +G+
Sbjct: 67 NNPNKTQDA-GTYQCIATNSFGT 88
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
KP WL+ PL + R + IE TL ++ V +AG Y C N++G + A
Sbjct: 324 KPTYRWLKNGDPL-LTRDRIQ-IEQG----TLNITIVNLSDAGMYQCVAENKHGVIFSSA 377
Query: 63 RVDVI 67
+ VI
Sbjct: 378 ELSVI 382
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 19/130 (14%)
Query: 31 LHTLILSGVTAEEAGKYTCRVSNEY--GYTETFARVDVINVSSGAVKHEKP-AMFLTRPD 87
L TL + GVT + G YTC S+ TF RV HEKP F + +
Sbjct: 159 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV-----------HEKPFVAFGSGME 207
Query: 88 TMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDE 147
+++ +GE + + G P P++ W K + ++ T+ LT+ ++ +
Sbjct: 208 SLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESN-----HTIKAGHVLTIMEVSERD 262
Query: 148 NGTYFIVARN 157
G Y ++ N
Sbjct: 263 TGNYTVILTN 272
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 19/130 (14%)
Query: 31 LHTLILSGVTAEEAGKYTCRVSNEY--GYTETFARVDVINVSSGAVKHEKP-AMFLTRPD 87
L TL + GVT + G YTC S+ TF RV HEKP F + +
Sbjct: 289 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV-----------HEKPFVAFGSGME 337
Query: 88 TMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDE 147
+++ +GE + + G P P++ W K + ++ T+ LT+ ++ +
Sbjct: 338 SLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESN-----HTIKAGHVLTIMEVSERD 392
Query: 148 NGTYFIVARN 157
G Y ++ N
Sbjct: 393 TGNYTVILTN 402
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 60/136 (44%), Gaps = 9/136 (6%)
Query: 28 SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPD 87
+N++ + L + ++ G Y C + +T R V+ + E+ A +T
Sbjct: 621 TNDILIMELKNASLQDQGDYVCLAQDR----KTKKRHCVVRQLTVL---ERVAPTITGNL 673
Query: 88 TMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDE 147
+ ++GE I S +G+P P++ W K + + S + + N LT++R ++
Sbjct: 674 ENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNR--NLTIRRVRKED 731
Query: 148 NGTYFIVARNIYGSDR 163
G Y A ++ G +
Sbjct: 732 EGLYTCQACSVLGCAK 747
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 80 AMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLT 139
A LT+P +M +V GE FS G P P VTW++ + ++TS+R T
Sbjct: 15 ARILTKPRSM-TVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 73
Query: 140 LKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ + G Y +V N G A T+
Sbjct: 74 ISSVQASDEGNYSVVVENSEGKQEAEFTL 102
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 77 EKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMT----ETV 132
E+P F+ P + V+ G SF + G PKP+VTW K K + S R T E+
Sbjct: 4 EEPPRFIKEPKDQIGVS-GGVASFVCQATGDPKPRVTWNKKGKKV-NSQRFETIEFDESA 61
Query: 133 NDYVRLTLKRATDDENGTYFIVARNIYG 160
+R+ R DEN Y VA+N G
Sbjct: 62 GAVLRIQPLRTPRDEN-VYECVAQNSVG 88
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 66/167 (39%), Gaps = 22/167 (13%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIE-DSNNLHTLILSGV-TAEEAGKYTCRVSNEYGYTET 60
KP V W + + +S RF+ IE D + L + + T + Y C N G
Sbjct: 35 KPRVTWNKKGKKV--NSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITV 92
Query: 61 FARVDVI---NVSSG----AVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVT 113
A++ V+ + SG + + + TR TM+ A +G+P P++T
Sbjct: 93 HAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAA-----------SGNPDPEIT 141
Query: 114 WMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG 160
W K + S+ L ++ + + + G Y VA N G
Sbjct: 142 WFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAG 188
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 77 EKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMT----ETV 132
E+P F+ P + V+ G SF + G PKP+VTW K K + S R T E+
Sbjct: 4 EEPPRFIKEPKDQIGVS-GGVASFVCQATGDPKPRVTWNKKGKKV-NSQRFETIEFDESA 61
Query: 133 NDYVRLTLKRATDDENGTYFIVARNIYG 160
+R+ R DEN Y VA+N G
Sbjct: 62 GAVLRIQPLRTPRDEN-VYECVAQNSVG 88
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 64/167 (38%), Gaps = 22/167 (13%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIE--DSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET 60
KP V W + + +S RF+ IE +S I T + Y C N G
Sbjct: 35 KPRVTWNKKGKKV--NSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITV 92
Query: 61 FARVDVI---NVSSG----AVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVT 113
A++ V+ + SG + + + TR TM+ A +G+P P++T
Sbjct: 93 HAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAA-----------SGNPDPEIT 141
Query: 114 WMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG 160
W K + S+ L ++ + + + G Y VA N G
Sbjct: 142 WFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAG 188
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 15/129 (11%)
Query: 33 TLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSV 92
TL + V+ E+ G Y C N G R+ V +P DT +
Sbjct: 257 TLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIV---------QAQPEWLKVISDTEADI 307
Query: 93 ALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYF 152
G ++ + AG P+P V W++ + + + +R E + +R + + + +++G Y
Sbjct: 308 --GSNLRWGCAAAGKPRPTVRWLRNGEPLASQNR--VEVLAGDLRFS--KLSLEDSGMYQ 361
Query: 153 IVARNIYGS 161
VA N +G+
Sbjct: 362 CVAENKHGT 370
Score = 32.7 bits (73), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/137 (18%), Positives = 58/137 (42%), Gaps = 9/137 (6%)
Query: 28 SNNLHTLILSGVTAEEAGKYTCRVSNEYGYT--ETFARVDVINVSSGAVKHEKPAMFLTR 85
S L ++ A + G Y+C ++ ++ F++ +N+++ + P++
Sbjct: 153 SQTTGNLYIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDTRLFAPSIKARF 212
Query: 86 PDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATD 145
P ++ +G+ ++ G+P P++ W K ++ T T L + +
Sbjct: 213 PAETYAL-VGQQVTLECFAFGNPVPRIKWRKVDGSLSPQWTTAEPT------LQIPSVSF 265
Query: 146 DENGTYFIVARNIYGSD 162
++ GTY A N G D
Sbjct: 266 EDEGTYECEAENSKGRD 282
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 77 EKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTS---SRTMTETVN 133
E+P F+ P + V+ G SF + G PKP+VTW K K + + + E+
Sbjct: 4 EEPPRFIKEPKDQIGVS-GGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 134 DYVRLTLKRATDDENGTYFIVARNIYG 160
+R+ R DEN Y VA+N G
Sbjct: 63 AVLRIQPLRTPRDEN-VYECVAQNSVG 88
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 33/131 (25%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEE--AGKYTCRVSNEYGYTETF 61
PE+ W + P+ S+ + L + L ++EE GKY C +N G
Sbjct: 138 PEITWFKDFLPVDPSASNGRI----KQLRSGALQIESSEETDQGKYECVATNSAG----- 188
Query: 62 ARVDVINVSSGAVKHEKPAMFLTRPDTMM----------SVALGEDISFSFRLAGSPKPK 111
V++ PA R + + G +++ + GSP P
Sbjct: 189 ------------VRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPY 236
Query: 112 VTWMKGIKDIT 122
V WM+G +D+T
Sbjct: 237 VKWMQGAEDLT 247
Score = 29.6 bits (65), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 66/167 (39%), Gaps = 22/167 (13%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIE-DSNNLHTLILSGV-TAEEAGKYTCRVSNEYGYTET 60
KP V W + + +S RF+ IE D + L + + T + Y C N G
Sbjct: 35 KPRVTWNKKGKKV--NSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITV 92
Query: 61 FARVDVI---NVSSG----AVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVT 113
A++ V+ + SG + + + TR TM+ A +G+P P++T
Sbjct: 93 HAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAA-----------SGNPDPEIT 141
Query: 114 WMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG 160
W K + S+ L ++ + + + G Y VA N G
Sbjct: 142 WFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAG 188
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 82 FLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLK 141
LT+P +M +V GE FS G P P VTW++ + ++TS+R T +
Sbjct: 11 ILTKPRSM-TVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEIS 69
Query: 142 RATDDENGTYFIVARNIYGSDRAFVTV 168
+ G Y +V N G A T+
Sbjct: 70 SVQASDEGNYSVVVENSEGKQEAEFTL 96
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYG 56
Y PEV+W + + P+ K S F+ D +L +S V ++ KYTC+ N G
Sbjct: 68 YPDPEVMWFKDDNPV-KESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG 122
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 74 VKHEKPAM--FLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTET 131
V EKP + + T+ M V G F ++ G P P+V W K + S +
Sbjct: 33 VAEEKPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDY 92
Query: 132 VND-YVRLTLKRATDDENGTYFIVARNIYG 160
+ LT+ D++ Y A N G
Sbjct: 93 DEEGNCSLTISEVCGDDDAKYTCKAVNSLG 122
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYG 56
Y PEV+W + + P+ K S F+ D +L +S V ++ KYTC+ N G
Sbjct: 68 YPDPEVMWFKDDNPV-KESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG 122
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 74 VKHEKPAM--FLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTET 131
V EKP + + T+ M V G F ++ G P P+V W K + S +
Sbjct: 33 VAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDY 92
Query: 132 VND-YVRLTLKRATDDENGTYFIVARNIYG 160
+ LT+ D++ Y A N G
Sbjct: 93 DEEGNCSLTISEVCGDDDAKYTCKAVNSLG 122
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 40.0 bits (92), Expect = 6e-04, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 14/131 (10%)
Query: 34 LILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVA 93
L + V A AG +TC N G+ + ++V P ++ P T + A
Sbjct: 679 LTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY----------VPPRWILEP-TDKAFA 727
Query: 94 LGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVR---LTLKRATDDENGT 150
G D + G PKP+VTW K + D + + ++ N V L + G
Sbjct: 728 QGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGY 787
Query: 151 YFIVARNIYGS 161
Y A N GS
Sbjct: 788 YLCEAINGIGS 798
Score = 35.8 bits (81), Expect = 0.011, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 21/125 (16%)
Query: 33 TLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSV 92
TLI+ E++GKY C V+N G E+ V + A K + P +V
Sbjct: 307 TLIIKDAVVEDSGKYLCVVNNSVG-GESVETVLTVTAPLSA-KIDPPT---------QTV 355
Query: 93 ALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYF 152
G F+ + G+P V+WMK K I S E+V L ++ ++ G Y
Sbjct: 356 DFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-----ESV-----LRIESVKKEDKGMYQ 405
Query: 153 IVARN 157
RN
Sbjct: 406 CFVRN 410
Score = 27.3 bits (59), Expect = 3.9, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 17/134 (12%)
Query: 34 LILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVA 93
L + V E+ G Y C V N+ E A + + + + P + + M
Sbjct: 391 LRIESVKKEDKGMYQCFVRNDRESAEASAELKL------GGRFDPPVIRQAFQEETMEP- 443
Query: 94 LGEDISFSFRLAGSPKPKVTWMKGIKDITTSSR-------TMTETVNDYVRLTLKRATDD 146
G + G+P P+++W K I + R T+ V Y+ +T A D
Sbjct: 444 -GPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHAND- 501
Query: 147 ENGTYFIVARNIYG 160
G Y +A++ G
Sbjct: 502 -GGLYKCIAKSKVG 514
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 18/139 (12%)
Query: 23 KYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMF 82
K++ LH + V E+ G Y C N G R+ + H +P
Sbjct: 251 KWLSSEPLLH---IQNVDFEDEGTYECEAENIKGRDTYQGRI---------IIHAQPDWL 298
Query: 83 LTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKR 142
DT + G D+ +S +G P+P V W++ + + + +R E +R + +
Sbjct: 299 DVITDTEADI--GSDLRWSCVASGKPRPAVRWLRDGQPLASQNR--IEVSGGELRFS--K 352
Query: 143 ATDDENGTYFIVARNIYGS 161
+++G Y VA N +G+
Sbjct: 353 LVLEDSGMYQCVAENKHGT 371
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 90 MSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENG 149
+V G+D + G+P P++TW+ + I + T V + L ++ A +++G
Sbjct: 21 CAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAE---LHIQDALPEDHG 77
Query: 150 TYFIVARNIYG--SDRAFVTV 168
TY +A N G S A+VTV
Sbjct: 78 TYTCLAENALGQVSCSAWVTV 98
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%)
Query: 95 GEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIV 154
G + F R G P P + W+ K + ++ TV L ++ A +NGTY +
Sbjct: 400 GHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCI 459
Query: 155 ARNIYGSD 162
A N G+D
Sbjct: 460 AANAGGND 467
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 90 MSVALGEDISFSFRLAGSPKPKVTWMKGIKDITT--SSRTMTETVNDYVRLTLKRATDDE 147
+S+ G+ ++ + G P P+VTW G + I + R E +D L + +
Sbjct: 15 ISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQD 74
Query: 148 NGTYFIVARNIYGSDRAFVTV 168
G Y + N +GSD A V +
Sbjct: 75 GGLYTLSLGNEFGSDSATVNI 95
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYG 56
PEV W G + +IE++++L TLI+ V ++ G YT + NE+G
Sbjct: 35 PEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFG 87
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
P++ W R N + ++ R +D+ TL++ V ++AG YT NE G T R
Sbjct: 45 PKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTR 104
Query: 64 VDV 66
+DV
Sbjct: 105 LDV 107
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 90 MSVALGEDISFSFRLAGSPKPKVTWMKGIKDITT--SSRTMTETVNDYVRLTLKRATDDE 147
+S+ G+ ++ + G P P+VTW G + I + R E +D L + +
Sbjct: 17 ISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQD 76
Query: 148 NGTYFIVARNIYGSDRAFVTV 168
G Y + N +GSD A V +
Sbjct: 77 GGLYTLSLGNEFGSDSATVNI 97
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYG 56
PEV W G + +IE++++L TLI+ V ++ G YT + NE+G
Sbjct: 37 PEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFG 89
>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human
Myosin Light Chain Kinase
Length = 114
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%)
Query: 92 VALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTY 151
V GE + ++ G+ TWMK K I S E + +LT+ A + G Y
Sbjct: 19 VRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCY 78
Query: 152 FIVARNIYGSDRAFVTV 168
++ N GS +A V +
Sbjct: 79 TLLVENKLGSRQAQVNL 95
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 72 GAVKHEK-PAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKG------IKDITTS 124
G+++ E P + P ++ V+ GE + + + G P P + W KG KD S
Sbjct: 1 GSLRQEDFPPRIVEHPSDLI-VSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRS 59
Query: 125 SRTMTETVND-YVRLTLKRATDDENGTYFIVARNIYG 160
R + + + ++R+ R + + G Y VARN G
Sbjct: 60 HRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLG 96
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 67 INVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSR 126
+ SSG P FL RP + V+ G + + G P P V W KG + + S R
Sbjct: 4 MKASSG--DQGSPPCFLRRPRPVRVVS-GAEAELKCVVLGEPPPVVVWEKGGQQLAASER 60
Query: 127 TMTETVNDYVRLTLKRATDDENGTYFIVARN 157
L L A + G Y ARN
Sbjct: 61 LSFPADGAEHGLLLTAALPTDAGVYVCRARN 91
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSN 53
P V+W +G L +S R + D H L+L+ +AG Y CR N
Sbjct: 44 PVVVWEKGGQQL-AASERLSFPADGAE-HGLLLTAALPTDAGVYVCRARN 91
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 71/157 (45%), Gaps = 9/157 (5%)
Query: 8 WLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR-VDV 66
WL P+ + + +++ +N L ++ V A + G Y+C VS+ F++ + +
Sbjct: 44 WLLNEFPVFITMDKRRFVSQTNG--NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPL 101
Query: 67 INVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSR 126
I + K PA + + + ++ +G++++ G+P P + W K ++ + +++
Sbjct: 102 IPIPERTTK-PYPADIVVQFKDVYAL-MGQNVTLECFALGNPVPDIRWRKVLEPMPSTAE 159
Query: 127 TMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDR 163
T L + ++ G Y A NI G D+
Sbjct: 160 ISTSG----AVLKIFNIQLEDEGIYECEAENIRGKDK 192
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 72 GAVKHEK-PAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKG------IKDITTS 124
G+++ E P + P ++ V+ GE + + + G P P + W KG KD S
Sbjct: 1 GSLRQEDFPPRIVEHPSDLI-VSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRS 59
Query: 125 SRTMTETVND-YVRLTLKRATDDENGTYFIVARNIYG 160
R + + + ++R+ R + + G Y VARN G
Sbjct: 60 HRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLG 96
>pdb|1GXE|A Chain A, Central Domain Of Cardiac Myosin Binding Protein C
Length = 139
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 45/127 (35%), Gaps = 34/127 (26%)
Query: 75 KHEKPAMFLTRP----DTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKD---------- 120
+ E P + L P DT++ VA G + ++G P P V W K I
Sbjct: 10 RQEPPKIHLDCPGRIPDTIVVVA-GNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAP 68
Query: 121 -------------------ITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGS 161
T R ET D T++ A ++ G Y + +N G
Sbjct: 69 DAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGE 128
Query: 162 DRAFVTV 168
D+ +TV
Sbjct: 129 DQVNLTV 135
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 90 MSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYV-RLTLKRATDDEN 148
+V G D F R+ G P P+ W K I S R D V L ++ T +++
Sbjct: 15 QTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDS 74
Query: 149 GTYFIVARNIYG--SDRAFVTV 168
+ + A NI G S AF+ V
Sbjct: 75 ASIMVKAINIAGETSSHAFLLV 96
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 18/127 (14%)
Query: 8 WLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT-ETFARVDV 66
W + N +P + N LI + V ++AG Y CRV+N + + ++++DV
Sbjct: 52 WFKMNKEIP-----------NGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDV 100
Query: 67 INVSSGAVK-----HEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDI 121
++ + E P T + G + GSP P W K +
Sbjct: 101 CDIPESFQRSVDGVSESKLQICVEP-TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL 159
Query: 122 TTSSRTM 128
T ++ +
Sbjct: 160 THETKKL 166
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 70/170 (41%), Gaps = 17/170 (10%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTA-EEAGKYTCRVSNEYGYTETFA 62
P ++W + + + R+ +E + L + V A + Y C N G
Sbjct: 36 PSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVG------ 89
Query: 63 RVDVINVSSGAVKHEK---PAMF--LTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKG 117
D ++ + +E PA F +T+ + +G + + + G+P P + W+K
Sbjct: 90 --DAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKN 147
Query: 118 IKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVT 167
+ S+ ++ D L ++ + +++ G Y VA N G++ + T
Sbjct: 148 QTKVDMSNPRY--SLKDGF-LQIENSREEDQGKYECVAENSMGTEHSKAT 194
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 4 PEVIW-LRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P+V W L G T +S K I LH+LI V A +AG Y C N G
Sbjct: 35 PDVSWYLNGRTV--QSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTV 92
Query: 63 RVDVI 67
++DV+
Sbjct: 93 QLDVL 97
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 79 PAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWM---KGIKDITTSSRTMTETVNDY 135
P F+ P+ M S+ G F+++G P P V+W + ++ ++E
Sbjct: 5 PPRFIQVPENM-SIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS 63
Query: 136 VRLTLKRATDDENGTYFIVARNIYG 160
+ + RA+D G Y VA+N G
Sbjct: 64 LIFEVVRASD--AGAYACVAKNRAG 86
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 16/167 (9%)
Query: 4 PEVIW-LRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P +IW +G + K RF + SNN L + G+ + G Y C A
Sbjct: 130 PTIIWKHKGRDVILKKDVRFIVL--SNNY--LQIRGIKKTDEGTYRCE-------GRILA 178
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVA-LGEDISFSFRLAGSPKPKVTWMKGIKDI 121
R + IN V P R + + A LG+ ++ G P+P ++W K + I
Sbjct: 179 RGE-INFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPI 237
Query: 122 TTSSRTMTETV--NDYVRLTLKRATDDENGTYFIVARNIYGSDRAFV 166
+ + +D LT++ ++ Y +A N G A +
Sbjct: 238 ENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASI 284
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 14/154 (9%)
Query: 5 EVIWLRGN-TPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
++ W N L + R + + ++ TL + ++AG Y C V+ E G T++ A
Sbjct: 34 DISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDG-TQSEAT 92
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTW-MKGIKDIT 122
V+ VK + MF P T GED + S P + W KG I
Sbjct: 93 VN--------VKIFQKLMFKNAP-TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVIL 143
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVAR 156
N+Y+++ + TD+ GTY R
Sbjct: 144 KKDVRFIVLSNNYLQIRGIKKTDE--GTYRCEGR 175
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 70/170 (41%), Gaps = 17/170 (10%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTA-EEAGKYTCRVSNEYGYTETFA 62
P ++W + + + R+ +E + L + V A + Y C N G
Sbjct: 38 PSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVG------ 91
Query: 63 RVDVINVSSGAVKHEK---PAMF--LTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKG 117
D ++ + +E PA F +T+ + +G + + + G+P P + W+K
Sbjct: 92 --DAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKN 149
Query: 118 IKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVT 167
+ S+ ++ D L ++ + +++ G Y VA N G++ + T
Sbjct: 150 QTKVDMSNPRY--SLKDGF-LQIENSREEDQGKYECVAENSMGTEHSKAT 196
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 21/125 (16%)
Query: 33 TLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSV 92
TLI+ E++GKY C V+N G E+ V + A K + P +V
Sbjct: 274 TLIIKDAVVEDSGKYLCVVNNSVG-GESVETVLTVTAPLSA-KIDPPT---------QTV 322
Query: 93 ALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYF 152
G F+ + G+P V+WMK K I S E+V L ++ ++ G Y
Sbjct: 323 DFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-----ESV-----LRIESVKKEDKGMYQ 372
Query: 153 IVARN 157
RN
Sbjct: 373 CFVRN 377
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 68/164 (41%), Gaps = 14/164 (8%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSG---VTAEEAGKYTCRVSNEYGYTE 59
KP + W++ + SS RF+ IE + +++ V +EA Y C +N G
Sbjct: 36 KPRITWMKKGKKV--SSQRFEVIEFDDGAGSVLRIQPLRVQRDEA-IYECTATNSLGEIN 92
Query: 60 TFARVDVINVSSGAVKHEKPAMFLT--RPDTMMSVALGEDISFSFRLAGSPKPKVTWMKG 117
T A++ V+ + + P+ F T + V G + G+P P+++W K
Sbjct: 93 TSAKLSVLE------EDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAGGNPDPEISWFKD 146
Query: 118 IKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGS 161
+ ++ L ++ + + + G Y VA N G+
Sbjct: 147 FLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNSAGT 190
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 72 GAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTE- 130
G KP +F+ P+ ++ G SF + G PKP++TWMK K +++ + E
Sbjct: 1 GPGSDSKP-VFVKVPEDQTGLS-GGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEF 58
Query: 131 --TVNDYVRLTLKRATDDENGTYFIVARNIYG 160
+R+ R DE Y A N G
Sbjct: 59 DDGAGSVLRIQPLRVQRDE-AIYECTATNSLG 89
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 25/127 (19%)
Query: 33 TLILSGVTAEEAGKYTCRVSNEYG--YTETFARVDVINVSSGAVKHEKPAMFLTRPDTMM 90
TLI+ E++GKY C V+N G ET V+ V++ P P T
Sbjct: 271 TLIIKDAVVEDSGKYLCVVNNSVGGESVET-----VLTVTA-------PLSAKIDPPT-Q 317
Query: 91 SVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGT 150
+V G F+ + G+P V+WMK K I S E+V L ++ ++ G
Sbjct: 318 TVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-----ESV-----LRIESVKKEDKGM 367
Query: 151 YFIVARN 157
Y RN
Sbjct: 368 YQCFVRN 374
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 25/127 (19%)
Query: 33 TLILSGVTAEEAGKYTCRVSNEYG--YTETFARVDVINVSSGAVKHEKPAMFLTRPDTMM 90
TLI+ E++GKY C V+N G ET V+ V++ P P T
Sbjct: 277 TLIIKDAVVEDSGKYLCVVNNSVGGESVET-----VLTVTA-------PLSAKIDPPT-Q 323
Query: 91 SVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGT 150
+V G F+ + G+P V+WMK K I S E+V L ++ ++ G
Sbjct: 324 TVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-----ESV-----LRIESVKKEDKGM 373
Query: 151 YFIVARN 157
Y RN
Sbjct: 374 YQCFVRN 380
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 15/135 (11%)
Query: 34 LILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVA 93
+ VT E+ G YTC VS E G + +V +I + V KP + + T+ + A
Sbjct: 70 ITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL----VPPSKPTVNIPSSATIGNRA 125
Query: 94 LGEDISFSFRLAGSPKPKVTWMK-GIKDITTSSRTMTETVNDYV------RLTLKRATDD 146
+ ++ S GSP + TW K GI T T + + YV L +
Sbjct: 126 V---LTCS-EQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS 181
Query: 147 ENGTYFIVARNIYGS 161
+ G Y ARN YG+
Sbjct: 182 DTGEYSCEARNGYGT 196
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
P + WL+ K R + N +LI+ V + G YTC V NEYG
Sbjct: 42 PTMRWLKNGKEF-KQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 100
Query: 64 VDVI 67
+DV+
Sbjct: 101 LDVV 104
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 89 MMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETV-NDYVRLTLKRATDDE 147
+ +V + F G+P P + W+K K+ R V N + L ++ +
Sbjct: 21 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSD 80
Query: 148 NGTYFIVARNIYGS 161
G Y V N YGS
Sbjct: 81 KGNYTCVVENEYGS 94
>pdb|2EO1|A Chain A, Solution Structure Of The Ig Domain Of Human Obscn Protein
Length = 102
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 70 SSGAV--KHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRT 127
SSG V E+PA + + S L +++ + +VTW K K +++SS+
Sbjct: 5 SSGKVVFAKEQPAHREVQAEAGASATLSCEVA-------QAQTEVTWYKDGKKLSSSSKV 57
Query: 128 MTETVNDYVRLTLKRATDDENGTYFIVA 155
E V RL +++A E G Y A
Sbjct: 58 RVEAVGCTRRLVVQQAGQAEAGEYSCEA 85
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 4 PEVIWLRGNTPL-PKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYG 56
P++ W P+ P S+ K + N +H+LI+ VT+ +AG YTC +N G
Sbjct: 39 PDLSWQLDGKPVRPDSA--HKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAG 90
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
P + WL+ K R + N +LI+ V + G YTC V NEYG
Sbjct: 38 PTMRWLKNGKEF-KQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 96
Query: 64 VDVI 67
+DV+
Sbjct: 97 LDVV 100
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 89 MMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETV-NDYVRLTLKRATDDE 147
+ +V + F G+P P + W+K K+ R V N + L ++ +
Sbjct: 17 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSD 76
Query: 148 NGTYFIVARNIYGS 161
G Y V N YGS
Sbjct: 77 KGNYTCVVENEYGS 90
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
P + WL+ K R + N +LI+ V + G YTC V NEYG
Sbjct: 43 PTMRWLKNGKEF-KQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 101
Query: 64 VDVI 67
+DV+
Sbjct: 102 LDVV 105
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 89 MMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETV-NDYVRLTLKRATDDE 147
+ +V + F G+P P + W+K K+ R V N + L ++ +
Sbjct: 22 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSD 81
Query: 148 NGTYFIVARNIYGS 161
G Y V N YGS
Sbjct: 82 KGNYTCVVENEYGS 95
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 90 MSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENG 149
+ ++GE I S +G+P P++ W K + + S + + N LT++R ++ G
Sbjct: 20 QTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNR--NLTIRRVRKEDEG 77
Query: 150 TYFIVARNIYGSDR 163
Y A ++ G +
Sbjct: 78 LYTCQACSVLGCAK 91
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 34 LILSGVTAEEAGKYTCRVSN-EYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSV 92
L+ + V A+E G+Y CRVS G + R+ V+ P + P +
Sbjct: 82 LLRNAVQADE-GEYECRVSTFPAGSFQARLRLRVL----------VPPLPSLNPGPALEE 130
Query: 93 ALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTET 131
G ++ S GSP P VTW +K TTSSR+ +
Sbjct: 131 GQGLTLAASCTAEGSPAPSVTWDTEVKG-TTSSRSFKHS 168
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Query: 67 INVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSR 126
+ SSG P FL P + V+ G + + G P P V W KG + + S R
Sbjct: 3 MKASSG--DQGSPPCFLRFPRPVRVVS-GAEAELKCVVLGEPPPVVVWEKGGQQLAASER 59
Query: 127 TMTETVNDYVRLTLKRATDDENGTYFIVARN 157
L L A + G Y ARN
Sbjct: 60 LSFPADGAEHGLLLTAALPTDAGVYVCRARN 90
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSN 53
P V+W +G L +S R + D H L+L+ +AG Y CR N
Sbjct: 43 PVVVWEKGGQQL-AASERLSFPADGAE-HGLLLTAALPTDAGVYVCRARN 90
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 29/173 (16%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIE-DSNNLHTLILSGV-TAEEAGKYTCRVSNEYGYTET 60
+P+++W + + S+ RF+ IE D + L + + T + Y C SN G
Sbjct: 35 RPKIVWNKKGKKV--SNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISV 92
Query: 61 FARVDVINVSSGAVKHEKPAMFL---------TRPDTMMSVALGEDISFSFRLAGSPKPK 111
R+ V+ + P + + TR TM+ A +G+P P+
Sbjct: 93 STRLTVLR--EDQIPRGFPTIDMGPQLKVVERTRTATMLCAA-----------SGNPDPE 139
Query: 112 VTWMKGIKDITTSS---RTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGS 161
+TW K + TS+ R L ++++ + + G Y VA N G+
Sbjct: 140 ITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGT 192
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 77 EKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTE---TVN 133
E P F P V+ G SF + G P+PK+ W K K ++ + E
Sbjct: 4 ETPPRFTRTPVDQTGVSGGV-ASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62
Query: 134 DYVRLTLKRATDDENGTYFIVARNIYG 160
+R+ R DE Y VA N G
Sbjct: 63 SVLRIQPLRTPRDE-AIYECVASNNVG 88
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 34.3 bits (77), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Query: 67 INVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSR 126
+ SSG P FL P + V+ G + + G P P V W KG + + S R
Sbjct: 4 MKASSG--DQGSPPCFLRFPRPVRVVS-GAEAELKCVVLGEPPPVVVWEKGGQQLAASER 60
Query: 127 TMTETVNDYVRLTLKRATDDENGTYFIVARN 157
L L A + G Y ARN
Sbjct: 61 LSFPADGAEHGLLLTAALPTDAGVYVCRARN 91
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSN 53
P V+W +G L +S R + D H L+L+ +AG Y CR N
Sbjct: 44 PVVVWEKGGQQL-AASERLSFPADGAE-HGLLLTAALPTDAGVYVCRARN 91
>pdb|1HCF|X Chain X, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
pdb|1HCF|Y Chain Y, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
Length = 101
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 102 FRLAGSPKPKVTWMKGIKDITTSSRTMTET-VNDYVR----LTLKRATDDENGTYFIVAR 156
F + G+PKP + W + S T+ V ++ L L T NG Y ++A+
Sbjct: 23 FTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAK 82
Query: 157 NIYGSDRAFVTV 168
N YG D ++
Sbjct: 83 NEYGKDEKQISA 94
>pdb|1WWB|X Chain X, Ligand Binding Domain Of Human Trkb Receptor
Length = 103
Score = 33.5 bits (75), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 102 FRLAGSPKPKVTWMKGIKDITTSSRTMTET-VNDYVR----LTLKRATDDENGTYFIVAR 156
F + G+PKP + W + S T+ V ++ L L T NG Y ++A+
Sbjct: 23 FTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAK 82
Query: 157 NIYGSDRAFVTV 168
N YG D ++
Sbjct: 83 NEYGKDEKQISA 94
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 22/139 (15%)
Query: 34 LILSGVTAEEAGKYTCRVSNEYG--YTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMS 91
+ S VT ++ G+YTC VS E G Y E + V+ V KP + + S
Sbjct: 67 ITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL------VPPSKPTISVPS-----S 115
Query: 92 VALGEDISFSF-RLAGSPKPKVTWMK-GIKDITTSSRTMTETVNDYVRLTLKRA------ 143
V +G + GSP + +W K GI +T ++ +N + K
Sbjct: 116 VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDP 175
Query: 144 -TDDENGTYFIVARNIYGS 161
T ++G Y+ A+N YG+
Sbjct: 176 VTAFDSGEYYCQAQNGYGT 194
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 34 LILSGVTAEEAGKYTCRVSNEYGYT--ETFARVDVINVSSGA 73
LI VTA ++G+Y C+ N YG A +D + ++ G
Sbjct: 171 LIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELNVGG 212
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 33.1 bits (74), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 68/165 (41%), Gaps = 16/165 (9%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIE-DSNNLHTLILSGVTAE-EAGKYTCRVSNEYGYTET 60
KP + W++ + SS RF+ IE D L + + + + Y C +N G T
Sbjct: 35 KPRITWMKKGKKV--SSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINT 92
Query: 61 FARVDVINVSSGAVKHEKPAMF--LTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGI 118
A++ V+ + + P F + + V + G+P P+++W K
Sbjct: 93 SAKLSVLE------EEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFKDF 146
Query: 119 K--DITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGS 161
D TS+ + + + L ++ + + + G Y VA N G+
Sbjct: 147 LPVDPATSNGRIKQLRSGA--LQIESSEESDQGKYECVATNSAGT 189
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 81 MFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTE---TVNDYVR 137
+F+ P+ ++ G SF + G PKP++TWMK K +++ + E +R
Sbjct: 8 VFIKVPEDQTGLS-GGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLR 66
Query: 138 LTLKRATDDENGTYFIVARNIYG 160
+ R DE Y A N G
Sbjct: 67 IQPLRVQRDE-AIYECTATNSLG 88
>pdb|2FBJ|H Chain H, Refined Crystal Structure Of The Galactan-Binding
Immunoglobulin Fab J539 At 1.95-Angstroms Resolution
Length = 220
Score = 33.1 bits (74), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 26 EDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMF-LT 84
+++ N L +S V +E+ Y C + YGY + + ++ VS+ + ++ P ++ LT
Sbjct: 73 DNAKNSLYLQMSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARN--PTIYPLT 130
Query: 85 RPDTMMS--VALGEDISFSFRLAGSPKPKVTWMKGIKDITT 123
P + S V +G I F S VTW K KDITT
Sbjct: 131 LPPALSSDPVIIGCLIHDYFP---SGTMNVTWGKSGKDITT 168
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 32.7 bits (73), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Query: 79 PAMFLTRPDTMMSVA-LGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVN-DYV 136
P R TM + A L + ++ + G P+P +TW K + I + N D
Sbjct: 11 PPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGS 70
Query: 137 RLTLKRATDDENGTYFIVARNIYGSDRAFV 166
L +K+ + Y +A N G A +
Sbjct: 71 ELIIKKVDKSDEAEYICIAENKAGEQDATI 100
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 32.7 bits (73), Expect = 0.11, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 15/110 (13%)
Query: 7 IWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66
+W N LP SPR + SN+ TL L VT + G Y C + NE + +
Sbjct: 321 LWWVNNQSLP-VSPRLQL---SNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPV--I 374
Query: 67 INVSSGAVKHE-KPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWM 115
+NV G P+ RP G ++S S A +P + +W+
Sbjct: 375 LNVLYGPDDPTISPSYTYYRP--------GVNLSLSCHAASNPPAQYSWL 416
>pdb|3SHS|A Chain A, Three N-Terminal Domains Of The Bacteriophage Rb49 Highly
Immunogenic Outer Capsid Protein (Hoc)
Length = 304
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 62/155 (40%), Gaps = 28/155 (18%)
Query: 9 LRGNTPLPKSSPRFKYIED----SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARV 64
+ G+ PLP S+ + + +D NN TL ++ T+E AG Y V + T + V
Sbjct: 26 VAGDEPLP-SNLTYTWTKDDQPHENNTATLTVADATSENAGSYKVTVQDTDTMTSVESEV 84
Query: 65 DVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKP------KVTWMKGI 118
++ + V +P F T V L + FS G P +W KG
Sbjct: 85 FLMEEAELIVNITEPQHFYVSSQT--DVELHATVKFS----GGKTPADNYELHYSWSKGE 138
Query: 119 KDITTSSRTMTETVNDYVRLTLKRATDDENGTYFI 153
I T+ +T++ T D+NG Y +
Sbjct: 139 DVIDTTQ-----------DITIQEFTADKNGVYTV 162
>pdb|2OZ4|L Chain L, Structural Plasticity In Igsf Domain 4 Of Icam-1 Mediates
Cell Surface Dimerization
Length = 214
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 81 MFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTL 140
+ LT+ ++SV+ GE +SFS R + S + W + + I S R + E ++ +
Sbjct: 2 ILLTQSPAILSVSPGERVSFSCRASQSIGTSIHWFQ--QRINGSPRLLIEYASESISGIP 59
Query: 141 KRATDDENGTYFIVARN 157
R + +GT F + N
Sbjct: 60 SRFSGSGSGTDFTLTIN 76
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 14/154 (9%)
Query: 5 EVIWLRGN-TPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
++ W N L + R + + ++ TL + ++AG Y C V+ E G T++ A
Sbjct: 34 DISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDG-TQSEAT 92
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTW-MKGIKDIT 122
V+ VK + MF P T GED + S P + W KG I
Sbjct: 93 VN--------VKIFQKLMFKNAP-TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVIL 143
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVAR 156
N+Y+++ + TD+ GTY R
Sbjct: 144 KKDVRFIVLSNNYLQIRGIKKTDE--GTYRCEGR 175
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 88 TMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITT----SSRTMTETVNDYVRLTLKRA 143
T + V E + + ++ G P+P + W K + ++T S R + + T++
Sbjct: 17 TDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGK 76
Query: 144 TDDENGTYFIVARNIYGS 161
+ + G Y+ VA+N G
Sbjct: 77 KEQDGGEYWCVAKNRVGQ 94
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 88 TMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITT----SSRTMTETVNDYVRLTLKRA 143
T + V E + + ++ G P+P + W K + ++T S R + + T++
Sbjct: 17 TDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGK 76
Query: 144 TDDENGTYFIVARNIYGS 161
+ + G Y+ VA+N G
Sbjct: 77 KEQDGGEYWCVAKNRVGQ 94
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 33 TLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66
TL + VT ++ G YTC VSN G T A ++V
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 34 LILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVA 93
L + E+AG Y C+ ++ G T+ V I + P F
Sbjct: 60 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEF----------K 109
Query: 94 LGEDISFSFRLAGSPKPKVTWMKGIKDITTSS 125
GED R++ SP P V+W+ +++TT S
Sbjct: 110 QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS 141
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 33 TLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66
TL + VT ++ G+YTC V+N G T A ++V
Sbjct: 369 TLNFTNVTVQDTGQYTCMVTNSAGNTTASATLNV 402
>pdb|3IZ6|E Chain E, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 274
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 83 LTRPDTMMSVALGEDISFSFRLAGSPK----------PKVTWMKGIKDITTSSRTMTETV 132
+ +P T+ G+ S + R+ +P+ KV GI+D+ TSSR T+T+
Sbjct: 157 IGQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTL 216
Query: 133 NDYVRLTL 140
++V+ T
Sbjct: 217 GNFVKATF 224
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 30.0 bits (66), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 94 LGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTY 151
+GE ++ G P+P+V W KG + T SR T + +++A ++G Y
Sbjct: 38 VGEQLNLVVPFQGKPRPQVVWTKGGAPLDT-SRVHVRTSDFDTVFFVRQAARSDSGEY 94
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 31/77 (40%)
Query: 92 VALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTY 151
V G++ F + P +V W ++ SS+ + + L + D++GTY
Sbjct: 20 VPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTY 79
Query: 152 FIVARNIYGSDRAFVTV 168
V N G + T+
Sbjct: 80 RAVCTNYKGEASDYATL 96
>pdb|2EDN|A Chain A, Solution Structure Of The First Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 70 SSGAVKHEKP-AMFLTRPDTMMSVALGEDISFSFRLAGSP---KPKVTWMKG 117
SSG+ E+P +FL +PD+ +SV G+D ++ G KP + W KG
Sbjct: 2 SSGSSGAEEPTGVFLKKPDS-VSVETGKDAVVVAKVNGKELPDKPTIKWFKG 52
>pdb|1LMK|A Chain A, The Structure Of A Bivalent Diabody
pdb|1LMK|C Chain C, The Structure Of A Bivalent Diabody
pdb|1LMK|E Chain E, The Structure Of A Bivalent Diabody
pdb|1LMK|G Chain G, The Structure Of A Bivalent Diabody
Length = 238
Score = 29.6 bits (65), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 26 EDSNNLHTLILSGVTAEEAGKYTC-RVSNEYGY---TETFARVDVINVSSGAVKHEKPAM 81
+ S+N+ + LS +T+E++ Y C R + Y Y + + + + VSSG + +
Sbjct: 72 DTSSNIAYMQLSSLTSEDSAVYYCARGEDYYAYWYVLDYWGQGTTVTVSSGGGGSD---I 128
Query: 82 FLTRPDTMMSVALGEDISFSFR 103
LT+ + V+LG+ S S R
Sbjct: 129 ELTQSPLSLPVSLGDQASISCR 150
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human
Leucine- Rich Repeat-Containing Protein 4
Length = 103
Score = 29.3 bits (64), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 5 EVIWLRGN-TPLPKSS--PRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
V WL N T L +S PR + D TL S V + G YTC V+N G +
Sbjct: 36 SVKWLLPNGTVLSHASRHPRISVLNDG----TLNFSHVLLSDTGVYTCMVTNVAGNSNAS 91
Query: 62 ARVDVINVSSG 72
A +NVSSG
Sbjct: 92 A---YLNVSSG 99
>pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Antagonist Peptide
Af10847
Length = 312
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 12/107 (11%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEY-GYTETFA 62
P++ W + PL + F ++D LI+ V + G YTC S Y G
Sbjct: 136 PKLQWYKDCKPLLLDNIHFSGVKDR-----LIVMNVAEKHRGNYTCHASYTYLGKQYPIT 190
Query: 63 RVDVINVSSGAVKHEKPA--MFLTRPDTMMSVALGEDISFSFRLAGS 107
RV + ++ KP + ++ + M V LG I + G
Sbjct: 191 RV----IEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQ 233
>pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed With Interleukin-1
Beta
Length = 315
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 12/107 (11%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEY-GYTETFA 62
P++ W + PL + F ++D LI+ V + G YTC S Y G
Sbjct: 139 PKLQWYKDCKPLLLDNIHFSGVKDR-----LIVMNVAEKHRGNYTCHASYTYLGKQYPIT 193
Query: 63 RVDVINVSSGAVKHEKPA--MFLTRPDTMMSVALGEDISFSFRLAGS 107
RV + ++ KP + ++ + M V LG I + G
Sbjct: 194 RV----IEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQ 236
>pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor With The
Interleukin-1 Receptor Antagonist (il1ra)
pdb|4GAF|B Chain B, Crystal Structure Of Ebi-005, A Chimera Of Human Il-1beta
And Il-1ra, Bound To Human Interleukin-1 Receptor Type 1
Length = 319
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 12/107 (11%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEY-GYTETFA 62
P++ W + PL + F ++D LI+ V + G YTC S Y G
Sbjct: 139 PKLQWYKDCKPLLLDNIHFSGVKDR-----LIVMNVAEKHRGNYTCHASYTYLGKQYPIT 193
Query: 63 RVDVINVSSGAVKHEKPA--MFLTRPDTMMSVALGEDISFSFRLAGS 107
RV + ++ KP + ++ + M V LG I + G
Sbjct: 194 RV----IEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQ 236
>pdb|4DEP|B Chain B, Structure Of The Il-1b Signaling Complex
pdb|4DEP|E Chain E, Structure Of The Il-1b Signaling Complex
Length = 321
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 12/107 (11%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEY-GYTETFA 62
P++ W + PL + F ++D LI+ V + G YTC S Y G
Sbjct: 141 PKLQWYKDCKPLLLDNIHFSGVKDR-----LIVMNVAEKHRGNYTCHASYTYLGKQYPIT 195
Query: 63 RVDVINVSSGAVKHEKPA--MFLTRPDTMMSVALGEDISFSFRLAGS 107
RV + ++ KP + ++ + M V LG I + G
Sbjct: 196 RV----IEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQ 238
>pdb|1YY8|A Chain A, Crystal Structure Of The Fab Fragment From The Monoclonal
Antibody CetuximabERBITUXIMC-C225
pdb|1YY8|C Chain C, Crystal Structure Of The Fab Fragment From The Monoclonal
Antibody CetuximabERBITUXIMC-C225
pdb|1YY9|C Chain C, Structure Of The Extracellular Domain Of The Epidermal
Growth Factor Receptor In Complex With The Fab Fragment
Of Cetuximab/erbitux/imc- C225
Length = 213
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 81 MFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTL 140
+ LT+ ++SV+ GE +SFS R + S + W + + S R + + ++ +
Sbjct: 2 ILLTQSPVILSVSPGERVSFSCRASQSIGTNIHWYQ--QRTNGSPRLLIKYASESISGIP 59
Query: 141 KRATDDENGTYFIVARN 157
R + +GT F ++ N
Sbjct: 60 SRFSGSGSGTDFTLSIN 76
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 86 PDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTET-VNDYVRLTLKRAT 144
P + SV L F +AG P P + G + S + MTE V DYV + A
Sbjct: 453 PAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAK 512
Query: 145 DDENGTYFI 153
G F+
Sbjct: 513 RLRGGVRFV 521
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 86 PDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTET-VNDYVRLTLKRAT 144
P + SV L F +AG P P + G + S + MTE V DYV + A
Sbjct: 453 PAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAK 512
Query: 145 DDENGTYFI 153
G F+
Sbjct: 513 RLRGGVRFV 521
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 86 PDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTET-VNDYVRLTLKRAT 144
P + SV L F +AG P P + G + S + MTE V DYV + A
Sbjct: 453 PAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAK 512
Query: 145 DDENGTYFI 153
G F+
Sbjct: 513 RLRGGVRFV 521
>pdb|3MJ7|B Chain B, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
Length = 225
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 40 TAEEAGKYTCRVSNEYGYTETFARVDVINVSSGA 73
++E +G Y+C V N G + R+DV+ S+ A
Sbjct: 186 SSEYSGTYSCTVQNRVGSDQCMLRLDVVPPSNRA 219
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 54/144 (37%), Gaps = 27/144 (18%)
Query: 28 SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPD 87
S N+ L LS + G Y C+V G + V+ SG
Sbjct: 87 SINVTNLQLSDI-----GTYQCKVKKAPGVANKKFLLTVLVKPSG--------------- 126
Query: 88 TMMSVALGEDISFSFRLAGSPKP-----KVTWMKGIKDITTSSRTMTETVNDYVRLTLKR 142
T V E+I F+L PK + W K T + + E + + ++K
Sbjct: 127 TRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVI--SVKN 184
Query: 143 ATDDENGTYFIVARNIYGSDRAFV 166
A+ + +GTY +N GSD+ +
Sbjct: 185 ASSEYSGTYSCTVQNRVGSDQCML 208
>pdb|2EDK|A Chain A, Solution Structure Of The Third Ig-Like Domain From
Human Myosin-Binding Protein C, Fast-Type
Length = 101
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 5 EVIWLRGNTPLPKSS---PRFKYIEDSNNLHTLILSGVTAEEAGKYT 48
+V+W++ L + R+++ +D H LI S V E+ G+Y
Sbjct: 38 QVMWMKNGVELTREDSFKARYRFKKDGKR-HILIFSDVVQEDRGRYQ 83
>pdb|2HFE|B Chain B, Rb+ Complex Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
Length = 211
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 81 MFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTL 140
+ LT+ ++SV+ GE +SFS R + S + W + + S R + + ++ +
Sbjct: 2 ILLTQSPAILSVSPGERVSFSCRASQSIGTDIHWYQ--QRTNGSPRLLIKYASESISGIP 59
Query: 141 KRATDDENGTYFIVARN 157
R + +GT F ++ N
Sbjct: 60 SRFSGSGSGTDFTLSIN 76
>pdb|3PQY|D Chain D, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
pdb|3PQY|I Chain I, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
pdb|3PQY|N Chain N, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
pdb|3PQY|S Chain S, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
Length = 195
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 33 TLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTR 85
TLIL V+ +A Y C +S Y TF + ++ V+ +++ PA++ R
Sbjct: 70 TLILPHVSLRDAAVYHCILSGGSNYKLTFGKGTLLTVT--PIQNPDPAVYQLR 120
>pdb|1K4D|B Chain B, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|B Chain B, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|L Chain L, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|A Chain A, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|A Chain A, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|A Chain A, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|1S5H|A Chain A, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
pdb|2BOB|B Chain B, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|B Chain B, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|1ZWI|B Chain B, Structure Of Mutant Kcsa Potassium Channel
pdb|2ATK|B Chain B, Structure Of A Mutant Kcsa K+ Channel
pdb|2H8P|B Chain B, Structure Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
pdb|2HG5|B Chain B, Cs+ Complex Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
pdb|2HJF|B Chain B, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2IH1|B Chain B, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2IH3|B Chain B, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2DWD|B Chain B, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|B Chain B, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
pdb|2HVJ|B Chain B, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|B Chain B, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|B Chain B, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|B Chain B, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|2NLJ|A Chain A, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
pdb|2P7T|B Chain B, Crystal Structure Of Kcsa Mutant
pdb|2JK5|B Chain B, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|B Chain B, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
pdb|3GB7|B Chain B, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|B Chain B, Potassium Channel Kcsa-Fab Complex In Li+ And K+
pdb|3F5W|B Chain B, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|B Chain B, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|B Chain B, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|B Chain B, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|B Chain B, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|B Chain B, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3HPL|B Chain B, Kcsa E71h-F103a Mutant In The Closed State
pdb|3FB7|B Chain B, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
pdb|3OR6|B Chain B, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
pdb|3OR7|B Chain B, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
pdb|3OGC|B Chain B, Kcsa E71a Variant In Presence Of Na+
pdb|3STL|B Chain B, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
pdb|3STZ|B Chain B, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 212
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 81 MFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTL 140
+ LT+ ++SV+ GE +SFS R + S + W + + S R + + ++ +
Sbjct: 2 ILLTQSPAILSVSPGERVSFSCRASQSIGTDIHWYQ--QRTNGSPRLLIKYASESISGIP 59
Query: 141 KRATDDENGTYFIVARN 157
R + +GT F ++ N
Sbjct: 60 SRFSGSGSGTDFTLSIN 76
>pdb|3Q3G|D Chain D, Crystal Structure Of A-Domain In Complex With Antibody
pdb|3Q3G|B Chain B, Crystal Structure Of A-Domain In Complex With Antibody
pdb|3Q3G|H Chain H, Crystal Structure Of A-Domain In Complex With Antibody
pdb|3Q3G|K Chain K, Crystal Structure Of A-Domain In Complex With Antibody
pdb|3QA3|D Chain D, Crystal Structure Of A-Domain In Complex With Antibody
pdb|3QA3|B Chain B, Crystal Structure Of A-Domain In Complex With Antibody
pdb|3QA3|H Chain H, Crystal Structure Of A-Domain In Complex With Antibody
pdb|3QA3|K Chain K, Crystal Structure Of A-Domain In Complex With Antibody
Length = 224
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 21/115 (18%)
Query: 17 KSSPRFK-----YIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGY----TETFARVDVI 67
K P+F+ + S+N L LS +T+E+ Y C YGY + + + +
Sbjct: 59 KYDPKFQGKATITADTSSNTAYLQLSSLTSEDTAVYYCASEGHYGYDGYAMDYWGQGTTV 118
Query: 68 NVSSGAVKHEKPAMFLTRPDTMMS----VALGEDISFSFRLAGSPKP-KVTWMKG 117
VSS K P+++ P + V LG + F P+P VTW G
Sbjct: 119 TVSS--AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYF-----PEPVTVTWNSG 166
>pdb|2K1M|A Chain A, 3d Nmr Structure Of Domain Cc0 Of Cardiac Myosin Binding
Protein C (Mybpc)
Length = 95
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 111 KVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVA 155
KV W +G DI+ S++ T LT++ + G+Y ++A
Sbjct: 38 KVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA 82
>pdb|3JZ7|A Chain A, Crystal Structure Of The Extracellular Domains Of
Coxsackie & Adenovirus Receptor From Mouse (Mcar)
Length = 214
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 54/144 (37%), Gaps = 27/144 (18%)
Query: 28 SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPD 87
S N+ L LS + G Y C+V G + V+ SG
Sbjct: 85 SINVTNLQLSDI-----GTYQCKVKKAPGVANKKFLLTVLVKPSG--------------- 124
Query: 88 TMMSVALGEDISFSFRLAGSPKP-----KVTWMKGIKDITTSSRTMTETVNDYVRLTLKR 142
T V E+I F+L PK + W K T + + E + + ++K
Sbjct: 125 TRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVI--SVKN 182
Query: 143 ATDDENGTYFIVARNIYGSDRAFV 166
A+ + +GTY +N GSD+ +
Sbjct: 183 ASSEYSGTYSCTVQNRVGSDQCML 206
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 40 TAEEAGKYTCRVSNEYGYTETFARVDVI 67
++E +G Y+C V N G + R+DV+
Sbjct: 184 SSEYSGTYSCTVQNRVGSDQCMLRLDVV 211
>pdb|2NPL|X Chain X, Nmr Structure Of Card D2 Domain
Length = 96
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 96 EDISFSFRLAGSPKP-----KVTWMK---GIKDITTSSRTMTETVNDYVRLTLKRATDDE 147
E+I F++ PK + W K K T+ MT +V +++K A+ +
Sbjct: 13 EEIGSDFKIKCEPKEGSLPLQYEWQKLSDSQKMPTSWLAEMTSSV-----ISVKNASSEY 67
Query: 148 NGTYFIVARNIYGSDRAFV 166
+GTY RN GSD+ +
Sbjct: 68 SGTYSCTVRNRVGSDQCLL 86
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 5 EVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARV 64
+V W G L S ED + L + +T + G Y C+V N+YG ++A +
Sbjct: 33 QVTWYFGVRQLENSEKYEITYEDG--VAILYVKDITKLDDGTYRCKVVNDYGEDSSYAEL 90
Query: 65 DVINV 69
V V
Sbjct: 91 FVKGV 95
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 111 KVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAF 165
+VTW G++ + S + + L +K T ++GTY N YG D ++
Sbjct: 33 QVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSY 87
>pdb|15C8|H Chain H, Catalytic Antibody 5c8, Free Fab
pdb|25C8|H Chain H, Catalytic Antibody 5c8, Fab-Hapten Complex
pdb|35C8|H Chain H, Catalytic Antibody 5c8, Fab-Inhibitor Complex
Length = 217
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 21/119 (17%)
Query: 10 RGNTPLPKSSPRFK-----YIEDSNNLHTLILSGVTAEEAGKYTCRVSNE-YGYTETFAR 63
GNT K P+F+ + S+N L LS +T+E++ Y C YG+ + + +
Sbjct: 55 NGNT---KYDPKFQGKATITADTSSNTAYLHLSSLTSEDSAVYYCAADPPYYGHGDYWGQ 111
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMS----VALGEDISFSFRLAGSPKP-KVTWMKG 117
+ VSS K P+++ P + V LG + F P+P VTW G
Sbjct: 112 GTTLTVSS--AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYF-----PEPVTVTWNSG 163
>pdb|7FAB|H Chain H, Crystal Structure Of Human Immunoglobulin Fragment Fab New
Refined At 2.0 Angstroms Resolution
Length = 217
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 12/98 (12%)
Query: 25 IEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLT 84
+ S N +L LS VTA + Y C + G + + + ++ VSS + K P++F
Sbjct: 71 VNTSKNQFSLRLSSVTAADTAVYYCARNLIAGGIDVWGQGSLVTVSSASTK--GPSVFPL 128
Query: 85 RPDTMM----SVALGEDISFSFRLAGSPKP-KVTWMKG 117
P + + ALG + F P+P V+W G
Sbjct: 129 APSSKSTSGGTAALGCLVKDYF-----PEPVTVSWNSG 161
>pdb|2J6E|H Chain H, Crystal Structure Of An Autoimmune Complex Between A Human
Igm Rheumatoid Factor And Igg1 Fc Reveals A Novel Fc
Epitope And Evidence For Affinity Maturation
pdb|2J6E|I Chain I, Crystal Structure Of An Autoimmune Complex Between A Human
Igm Rheumatoid Factor And Igg1 Fc Reveals A Novel Fc
Epitope And Evidence For Affinity Maturation
Length = 231
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 16/92 (17%)
Query: 25 IEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT----ETFARVDVINVSSGAVKHEKPA 80
++ S N +L LS VTA + Y C YT + + + + VSSG+ P
Sbjct: 84 VDTSKNQFSLKLSSVTAADTAVYYCARLGPDDYTLDGMDVWGQGTTVTVSSGSA--SAPT 141
Query: 81 MF-LTRPDTMMSVALG--------EDISFSFR 103
+F L DT SVA+G + I+FS++
Sbjct: 142 LFPLVSCDT-SSVAVGCLAQDFLPDSITFSWK 172
>pdb|4HG4|J Chain J, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|L Chain L, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|N Chain N, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|P Chain P, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|R Chain R, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|T Chain T, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|V Chain V, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|X Chain X, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|Z Chain Z, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
Length = 223
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 26 EDSNNLHTLILSGVTAEEAGKYTCR--VSNEYGYTETFARVDVINVSSGAVKHEKPAMFL 83
++S + + L+ +T+E+ Y C +S YG+ + + + ++ VSS + K P++F
Sbjct: 73 DESTSTAYMELTSLTSEDTAVYYCARGISGSYGWFDPWGQGTLVTVSSASTK--GPSVFP 130
Query: 84 TRPDTMM----SVALGEDISFSFRLAGSPKP-KVTWMKG 117
P + + ALG + F P+P V+W G
Sbjct: 131 LAPSSKSTSGGTAALGCLVKDYF-----PEPVTVSWNSG 164
>pdb|1NEZ|G Chain G, The Crystal Structure Of A TlCD8AA COMPLEX AT 2.1A
Resolution:implications For Memory T Cell Generation,
Co-Receptor Preference And Affinity
pdb|1NEZ|H Chain H, The Crystal Structure Of A TlCD8AA COMPLEX AT 2.1A
Resolution:implications For Memory T Cell Generation,
Co-Receptor Preference And Affinity
Length = 128
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 18 SSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRV-SNEYGYTETFARVDVINVSSGAV 74
SS F + D+NN + L L+ + E G Y C V SN Y + V + VSS V
Sbjct: 71 SSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPV-LQKVSSALV 127
>pdb|1ZTX|H Chain H, West Nile Virus Envelope Protein Diii In Complex With
Neutralizing E16 Antibody Fab
Length = 219
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 26 EDSNNLHTLILSGVTAEEAGKYTCRVSNEYG-YTETFARVDVINVSSGAVKHEKPAMFLT 84
+ S+N + LS +T+E++ Y C S YG Y + + + VSS K P+++
Sbjct: 73 DTSSNTAFMQLSSLTSEDSAVYYCARSASYGDYADYWGHGTTLTVSS--AKTTPPSVYPL 130
Query: 85 RPD----TMMSVALG 95
P T SV LG
Sbjct: 131 APGCGDTTGSSVTLG 145
>pdb|3B9K|A Chain A, Crystal Structure Of Cd8alpha-Beta In Complex With Yts
156.7 Fab
pdb|3B9K|E Chain E, Crystal Structure Of Cd8alpha-Beta In Complex With Yts
156.7 Fab
Length = 131
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 18 SSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRV-SNEYGY 57
SS F + D+NN + L L+ + E G Y C V SN Y
Sbjct: 71 SSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMY 111
>pdb|1BVK|B Chain B, Humanized Anti-Lysozyme Fv Complexed With Lysozyme
pdb|1BVK|E Chain E, Humanized Anti-Lysozyme Fv Complexed With Lysozyme
pdb|1BVL|A Chain A, Humanized Anti-Lysozyme Fv
pdb|1BVL|C Chain C, Humanized Anti-Lysozyme Fv
Length = 117
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 6 VIWLRGNTPLPKS-SPRFKYIED-SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
+IW GNT + R ++D S N +L LS VTA + Y C +Y + + +
Sbjct: 50 MIWGDGNTDYNSALKSRVTMLKDTSKNQFSLRLSSVTAADTAVYYCARERDY-RLDYWGQ 108
Query: 64 VDVINVSSG 72
++ VSSG
Sbjct: 109 GSLVTVSSG 117
>pdb|1BQH|G Chain G, Murine Cd8aa Ectodomain Fragment In Complex With H-2kbVSV8
pdb|1BQH|H Chain H, Murine Cd8aa Ectodomain Fragment In Complex With H-2kbVSV8
pdb|1BQH|I Chain I, Murine Cd8aa Ectodomain Fragment In Complex With H-2kbVSV8
pdb|1BQH|K Chain K, Murine Cd8aa Ectodomain Fragment In Complex With H-2kbVSV8
Length = 129
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 18 SSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRV-SNEYGY 57
SS F + D+NN + L L+ + E G Y C V SN Y
Sbjct: 71 SSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMY 111
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homolog 2
Length = 100
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
P + WL+ P PR E TL + + + G YTC ++ G T A
Sbjct: 38 PVISWLKEGFTFPGRDPRATIQEQG----TLQIKNLRISDTGTYTCVATSSSGETSWSAV 93
Query: 64 VDV 66
+DV
Sbjct: 94 LDV 96
>pdb|3I2C|H Chain H, Crystal Structure Of Anti-Il-23 Antibody Cnto4088
Length = 222
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 12/97 (12%)
Query: 26 EDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTR 85
+DS L L+++ + E+ Y C YG + + ++ VS A K P+++
Sbjct: 75 DDSQGLLYLLMNNLKTEDTAMYYCMREGIYGSFAYWGQGTLVTVS--AAKTTPPSVYPLA 132
Query: 86 PDTMMS----VALGEDISFSFRLAGSPKP-KVTWMKG 117
P + V LG + F P+P VTW G
Sbjct: 133 PGSAAQTNSMVTLGCLVKGYF-----PEPVTVTWNSG 164
>pdb|3CX2|A Chain A, Crystal Structure Of The C1 Domain Of Cardiac Isoform Of
Myosin Binding Protein-C At 1.3a
pdb|2V6H|A Chain A, Crystal Structure Of The C1 Domain Of Cardiac Myosin
Binding Protein-C
Length = 108
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 80 AMFLTRPDTMMSVALGEDISFSFRLAGSP---KPKVTWMKG 117
+F+ RP V +G I+FS R+AG+ P V W KG
Sbjct: 5 GLFVMRPQDG-EVTVGGSITFSARVAGASLLKPPVVKWFKG 44
>pdb|1QFW|L Chain L, Ternary Complex Of Human Chorionic Gonadotropin With Fv
Anti Alpha Subunit And Fv Anti Beta Subunit
Length = 114
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 33 TLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
TL ++ V A++ Y C+ S+EY Y TF
Sbjct: 76 TLTINPVEADDVATYYCQQSDEYPYMYTFG 105
>pdb|2ARJ|R Chain R, Cd8alpha-Alpha In Complex With Yts 105.18 Fab
pdb|2ARJ|Q Chain Q, Cd8alpha-Alpha In Complex With Yts 105.18 Fab
Length = 123
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 18 SSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRV 51
SS F + D+NN + L L+ + E G Y C V
Sbjct: 71 SSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSV 104
>pdb|2ATP|A Chain A, Crystal Structure Of A Cd8ab Heterodimer
pdb|2ATP|C Chain C, Crystal Structure Of A Cd8ab Heterodimer
Length = 122
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 18 SSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRV-SNEYGY 57
SS F + D+NN + L L+ + E G Y C V SN Y
Sbjct: 71 SSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMY 111
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 16 PKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET 60
P+S I++ NL + ++ A G YT + N +G ET
Sbjct: 132 PRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGET 176
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 16 PKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET 60
P+S I++ NL + ++ A G YT + N +G ET
Sbjct: 132 PRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGET 176
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 16 PKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET 60
P+S I++ NL + ++ A G YT + N +G ET
Sbjct: 132 PRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGET 176
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 24/62 (38%)
Query: 100 FSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIY 159
F+ + G P+P W K K IT + L + + ++G Y +N
Sbjct: 26 FAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSA 85
Query: 160 GS 161
GS
Sbjct: 86 GS 87
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+P IW + + + ++K ED L + ++G YTC V N G +
Sbjct: 35 RPTAIWTKDGKAITQGG-KYKLSEDKGGFF-LEIHKTDTSDSGLYTCTVKNSAGSVSSSC 92
Query: 63 RVDV 66
++ +
Sbjct: 93 KLTI 96
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 16 PKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET 60
P+S I++ NL + ++ A G YT + N +G ET
Sbjct: 132 PRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGET 176
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 6 VIWLRGN-TPLPKSS--PRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
V WL N T L +S PR + D TL S V + G YTC V+N G + A
Sbjct: 382 VKWLLPNGTVLSHASRHPRISVLNDG----TLNFSHVLLSDTGVYTCMVTNVAGNSNASA 437
Query: 63 RVDV 66
++V
Sbjct: 438 YLNV 441
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 16 PKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET 60
P+S I++ NL + ++ A G YT + N +G ET
Sbjct: 132 PRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGET 176
>pdb|1AHW|B Chain B, A Complex Of Extracellular Domain Of Tissue Factor With An
Inhibitory Fab (5g9)
pdb|1AHW|E Chain E, A Complex Of Extracellular Domain Of Tissue Factor With An
Inhibitory Fab (5g9)
pdb|1FGN|H Chain H, Monoclonal Murine Antibody 5g9-Anti-Human Tissue Factor
Length = 214
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 26 EDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTR 85
+ S+N L LS +T+E+ Y C N Y Y + + + + VSS K P+++
Sbjct: 73 DTSSNTAYLQLSSLTSEDTAVYYCARDNSY-YFDYWGQGTTLTVSSA--KTTPPSVYPLA 129
Query: 86 PDTMMS----VALGEDISFSFRLAGSPKP-KVTWMKG 117
P + V LG + F P+P VTW G
Sbjct: 130 PGSAAQTNSMVTLGCLVKGYF-----PEPVTVTWNSG 161
>pdb|2FD6|H Chain H, Structure Of Human Urokinase Plasminogen Activator In
Complex With Urokinase Receptor And An Anti-Upar
Antibody At 1.9 A
Length = 213
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 34 LILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVA 93
+ LS +T+E++ Y C + Y + + + + VSS K P+++ P M V
Sbjct: 81 MQLSSLTSEDSAVYFCARWGPHWYFDVWGQGTTVTVSS--AKTTPPSVYPLAPGNSM-VT 137
Query: 94 LGEDISFSFRLAGSPKP-KVTWMKG 117
LG + F P+P VTW G
Sbjct: 138 LGCLVKGYF-----PEPVTVTWNSG 157
>pdb|4GMS|H Chain H, Crystal Structure Of Heterosubtypic Fab S1391 IN COMPLEX
WITH Influenza A H3 Hemagglutinin
pdb|4GMS|I Chain I, Crystal Structure Of Heterosubtypic Fab S1391 IN COMPLEX
WITH Influenza A H3 Hemagglutinin
pdb|4GMS|J Chain J, Crystal Structure Of Heterosubtypic Fab S1391 IN COMPLEX
WITH Influenza A H3 Hemagglutinin
pdb|4GMT|H Chain H, Crystal Structure Of Heterosubtypic Fab S1391
pdb|4GMT|I Chain I, Crystal Structure Of Heterosubtypic Fab S1391
Length = 225
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 12/95 (12%)
Query: 28 SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRP- 86
S+N + LS +T+E++ Y C +Y + + + ++ VS A K P+++ P
Sbjct: 75 SSNTVYMQLSSLTSEDSAVYYCARPYDYSWFAYWGQGTLVTVS--AAKTTAPSVYPLAPV 132
Query: 87 ---DTMMSVALGEDISFSFRLAGSPKP-KVTWMKG 117
T SV LG + F P+P +TW G
Sbjct: 133 CGDTTGSSVTLGCLVKGYF-----PEPVTLTWNSG 162
>pdb|2FAT|H Chain H, An Anti-Urokinase Plasminogen Activator Receptor (Upar)
Antibody: Crystal Structure And Binding Epitope
pdb|3BT2|H Chain H, Structure Of Urokinase Receptor, Urokinase And Vitronectin
Complex
Length = 214
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 34 LILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVA 93
+ LS +T+E++ Y C + Y + + + + VSS K P+++ P M V
Sbjct: 81 MQLSSLTSEDSAVYFCARWGPHWYFDVWGQGTTVTVSS--AKTTPPSVYPLAPGNSM-VT 137
Query: 94 LGEDISFSFRLAGSPKP-KVTWMKG 117
LG + F P+P VTW G
Sbjct: 138 LGCLVKGYF-----PEPVTVTWNSG 157
>pdb|2AVG|A Chain A, Nmr Structure Of Cc1 Domain From Human Cardiac Myosin
Binding Protein C
Length = 120
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 80 AMFLTRPDTMMSVALGEDISFSFRLAGSP---KPKVTWMKG 117
+F+ RP V +G I+FS R+AG+ P V W KG
Sbjct: 15 GLFVMRPQDG-EVTVGGSITFSARVAGASLLKPPVVKWFKG 54
>pdb|4G5Z|H Chain H, Crystal Structure Of The Therapeutical Antibody Fragment
Of Canakinumab In Its Unbound State
pdb|4G6J|H Chain H, Crystal Structure Of Human Il-1beta In Complex With The
Therapeutic Antibody Binding Fragment Of Canakinumab
Length = 218
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 6 VIWLRGNTPLPKSSPRFKYI---EDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+IW G+ S + ++ ++S N L ++G+ AE+ Y C G + +
Sbjct: 50 IIWYDGDNQYYADSVKGRFTISRDNSKNTLYLQMNGLRAEDTAVYYCARDLRTGPFDYWG 109
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMM----SVALGEDISFSFRLAGSPKP-KVTWMKG 117
+ ++ VSS + K P++F P + + ALG + F P+P V+W G
Sbjct: 110 QGTLVTVSSASTK--GPSVFPLAPSSKSTSGGTAALGCLVKDYF-----PEPVTVSWNSG 162
>pdb|4DFI|A Chain A, Crystal Structure Of Cell Adhesion Molecule Nectin-2CD112
MUTANT FAMP
Length = 128
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 33 TLILSGVTAEEAGKYTCRVS 52
TL L G+T E+ G YTC S
Sbjct: 94 TLALHGLTVEDEGNYTCEFS 113
>pdb|4AG4|H Chain H, Crystal Structure Of A Ddr1-Fab Complex
Length = 215
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 25 IEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLT 84
++ S+N + LS T+E++ Y C + YG+ + + + + VS A K P+++
Sbjct: 72 VDKSSNTAYIQLSSPTSEDSAVYYC--TRGYGHLDYWGQGTTLTVS--AAKTTPPSVYPL 127
Query: 85 RPDTMMS----VALGEDISFSFRLAGSPKP-KVTWMKG 117
P + V LG + F P+P VTW G
Sbjct: 128 APGSAAQTNSMVTLGCLVKGYF-----PEPVTVTWNSG 160
>pdb|1IAI|M Chain M, Idiotype-Anti-Idiotype Fab Complex
pdb|1AIF|L Chain L, Anti-Idiotypic Fab 409.5.3 (Igg2a) Fab From Mouse
pdb|1AIF|A Chain A, Anti-Idiotypic Fab 409.5.3 (Igg2a) Fab From Mouse
Length = 215
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 8 WLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
W+ G + L P S ++L +S + AE+A Y C+ N Y YT
Sbjct: 48 WIYGTSNLASGVPVRFSGSGSGTSYSLTISSMEAEDAATYYCQQWNSYPYT 98
>pdb|3IY5|A Chain A, Variable Domains Of The Mouse Fab (1aif) Fitted Into The
Cryoem Reconstruction Of The Virus-Fab 16 Complex
Length = 108
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 8 WLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
W+ G + L P S ++L +S + AE+A Y C+ N Y YT
Sbjct: 48 WIYGTSNLASGVPVRFSGSGSGTSYSLTISSMEAEDAATYYCQQWNSYPYT 98
>pdb|1WIT|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module)
(Ig 18'), Nmr, Minimized Average Structure
pdb|1WIU|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module)
(Ig 18'), Nmr, 30 Structures
Length = 93
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 24/63 (38%)
Query: 106 GSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAF 165
G+P P TW G + + + + + A ++G Y + +N G D A
Sbjct: 28 GAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAI 87
Query: 166 VTV 168
V
Sbjct: 88 FEV 90
>pdb|3DMM|C Chain C, Crystal Structure Of The Cd8 Alpha BetaH-2dd Complex
Length = 166
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 18 SSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRV 51
SS F + D+NN + L L+ + E G Y C V
Sbjct: 76 SSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSV 109
>pdb|12E8|H Chain H, 2e8 Fab Fragment
pdb|12E8|P Chain P, 2e8 Fab Fragment
Length = 221
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 1 YVKPEVIWLRGNTP-LPKSSPRFKYIED-SNNLHTLILSGVTAEEAGKYTCRVSNEY--G 56
++ PE+ G+T +PK + D S+N L LS +T+E+ Y C ++Y G
Sbjct: 50 WIDPEI----GDTEYVPKFQGKATMTADTSSNTAYLQLSSLTSEDTAVYYCNAGHDYDRG 105
Query: 57 YTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMS----VALGEDISFSFRLAGSPKP-K 111
+ + ++ VS A K P+++ P + V LG + F P+P
Sbjct: 106 RFPYWGQGTLVTVS--AAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYF-----PEPVT 158
Query: 112 VTWMKG 117
VTW G
Sbjct: 159 VTWNSG 164
>pdb|4DGI|L Chain L, Structure Of Pom1 Fab Fragment Complexed With Human Prpc
Fragment 120- 230
Length = 213
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 13/69 (18%)
Query: 81 MFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTL 140
+ LT+ ++SV+ GE +SFS R + ++I TS + N+ RL +
Sbjct: 2 IVLTQSPAILSVSPGERVSFSCRAS-------------QNIGTSIHWYQQRTNESPRLII 48
Query: 141 KRATDDENG 149
K A++ +G
Sbjct: 49 KYASESISG 57
>pdb|3VH8|G Chain G, Kir3dl1 In Complex With Hla-B5701
pdb|3VH8|H Chain H, Kir3dl1 In Complex With Hla-B5701
Length = 316
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 36 LSGVTAEEAGKYTCRVSNEYGYTETFARVD--VINVSSGAVKHEKPAMFLTRPDTMMSVA 93
+S VT AG YTCR S+ + T A + VI V+ H KP++ L P + V
Sbjct: 78 MSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTG---NHRKPSL-LAHPGPL--VK 131
Query: 94 LGEDI 98
GE +
Sbjct: 132 SGERV 136
>pdb|1A5F|H Chain H, Fab Fragment Of A Monoclonal Anti-E-Selectin Antibody
Length = 217
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 14/99 (14%)
Query: 26 EDSNNLHTLILSGVTAEEAGKYTC-RVSNEYGYT-ETFARVDVINVSSGAVKHEKPAMFL 83
+DS+N L +S +T+E+ Y C RV Y Y + + + + VSS K P+++
Sbjct: 73 DDSSNTAYLQMSSLTSEDTAVYYCARVGLSYWYAMDYWGQGTSVTVSS--AKTTPPSVYP 130
Query: 84 TRPDTMMS----VALGEDISFSFRLAGSPKP-KVTWMKG 117
P + V LG + F P+P VTW G
Sbjct: 131 LAPGSAAQTNSMVTLGCLVKGYF-----PEPVTVTWNSG 164
>pdb|1BBD|L Chain L, Three Dimensional Structure Of The Fab Fragment Of A
Neutralizing Antibody To Human Rhinovirus Serotype 2
pdb|1A3R|L Chain L, Fab Fragment (Antibody 8f5) Complexed With Peptide From
Human Rhinovirus (Serotype 2) Viral Capsid Protein Vp2
(Residues 156-170)
Length = 220
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 33 TLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
TL +SGV AE+ Y C+ N Y Y TF
Sbjct: 78 TLSISGVQAEDLAVYYCQ--NNYNYPLTFG 105
>pdb|1A5F|L Chain L, Fab Fragment Of A Monoclonal Anti-E-Selectin Antibody
Length = 220
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 33 TLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
TL +SGV AE+ Y C+ N Y Y TF
Sbjct: 78 TLSISGVQAEDLAVYYCQ--NNYNYPLTFG 105
>pdb|1MCP|H Chain H, Phosphocholine Binding Immunoglobulin Fab McPC603. AN
X-Ray Diffraction Study At 2.7 Angstroms
pdb|2MCP|H Chain H, Refined Crystal Structure Of The Mc/pc603
Fab-phosphocholine Complex At 3.1 Angstroms Resolution
Length = 222
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Query: 26 EDSNNLHTLILSGVTAEEAGKYTCRVSNEYG---YTETFARVDVINVSSGAVKHEKPAMF 82
+ S ++ L ++ + AE+ Y C N YG Y + + + VSS + ++ P ++
Sbjct: 75 DTSQSILYLQMNALRAEDTAIYYC-ARNYYGSTWYFDVWGAGTTVTVSSESARN--PTIY 131
Query: 83 -LTRPDTMMS--VALGEDISFSFRLAGSPKPKVTWMKGIKDITT 123
LT P + S V +G I F S VTW K KDITT
Sbjct: 132 PLTLPPALSSDPVIIGCLIHDYFP---SGTMNVTWGKSGKDITT 172
>pdb|3S35|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
pdb|3S36|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
pdb|3S37|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
Length = 122
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 13/51 (25%)
Query: 31 LHTLILSGVTAEEAGKYTCRVSNEY--GYTETFARVDVINVSSGAVKHEKP 79
L TL + GVT + G YTC S+ TF RV HEKP
Sbjct: 73 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV-----------HEKP 112
>pdb|1IGC|L Chain L, Igg1 Fab Fragment (Mopc21) Complex With Domain Iii Of
Protein G From Streptococcus
Length = 213
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 33 TLILSGVTAEEAGKYTCRVSNEYGYT 58
TL +S V AE+ Y C N Y YT
Sbjct: 72 TLTISSVQAEDLADYHCGQGNSYPYT 97
>pdb|1MLB|B Chain B, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme
pdb|1MLC|B Chain B, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme Complexed With Lysozyme
pdb|1MLC|D Chain D, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme Complexed With Lysozyme
Length = 218
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 16/98 (16%)
Query: 26 EDSNNLHTLILSGVTAEEAGKYTC-RVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLT 84
+ S+N + LS +T+E++ Y C R YGY + + + VSS + P++F
Sbjct: 73 DTSSNTAYMQLSSLTSEDSAVYYCARGDGNYGY---WGQGTTLTVSSASTT--PPSVFPL 127
Query: 85 RPDTMMS----VALGEDISFSFRLAGSPKP-KVTWMKG 117
P + V LG + F P+P VTW G
Sbjct: 128 APGSAAQTNSMVTLGCLVKGYF-----PEPVTVTWNSG 160
>pdb|2BDN|H Chain H, Crystal Structure Of Human Mcp-1 Bound To A Blocking
Antibody, 11k2
Length = 217
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 21/117 (17%)
Query: 11 GNTPLPKSSPRFK-----YIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVD 65
GNT K P+F+ + S+N L LS +T+E+ Y C +G+ + + +
Sbjct: 56 GNT---KFDPKFQGKATITADTSSNTAYLQLSSLTSEDTAVYYC-ARGVFGFFDYWGQGT 111
Query: 66 VINVSSGAVKHEKPAMFLTRP----DTMMSVALGEDISFSFRLAGSPKP-KVTWMKG 117
+ VSS K P+++ P T SV LG + F P+P +TW G
Sbjct: 112 TLTVSS--AKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYF-----PEPVTLTWNSG 161
>pdb|2CPC|A Chain A, Solution Structure Of Rsgi Ruh-030, An Ig Like Domain
From Human Cdna
Length = 113
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 25 IEDSNNLHTLILSGVTAEEAGKYTCRVSNE 54
++ + + L+L V E++G+Y C + +E
Sbjct: 61 LQKEDTVRRLVLPAVQLEDSGEYLCEIDDE 90
>pdb|3R0N|A Chain A, Crystal Structure Of The Immunoglobulin Variable Domain Of
Nectin-2
pdb|4DFH|A Chain A, Crystal Structure Of Cell Adhesion Molecule Nectin-2CD112
VARIABLE Domain
pdb|4DFH|B Chain B, Crystal Structure Of Cell Adhesion Molecule Nectin-2CD112
VARIABLE Domain
pdb|4HZA|A Chain A, Crystal Structure Of The Immunoglobulin Variable Domain Of
Nectin-2 In Monoclinic Form
pdb|4HZA|B Chain B, Crystal Structure Of The Immunoglobulin Variable Domain Of
Nectin-2 In Monoclinic Form
Length = 128
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 33 TLILSGVTAEEAGKYTCRVS 52
TL L G+T E+ G YTC +
Sbjct: 94 TLALHGLTVEDEGNYTCEFA 113
>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like
Domain(2826-2915) From Human Obscurin
Length = 103
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 6 VIWLRGNTPLPKSSPRFKY-IEDSNNLHTLILSGVTAEEAGKYTCRV 51
V WL+ + KS KY + + L++ G + ++AG+YTC V
Sbjct: 39 VHWLKDRKAIRKSQ---KYDVVCEGTMAMLVIRGASLKDAGEYTCEV 82
>pdb|1PKQ|B Chain B, Myelin Oligodendrocyte Glycoprotein-(8-18c5) Fab-Complex
pdb|1PKQ|G Chain G, Myelin Oligodendrocyte Glycoprotein-(8-18c5) Fab-Complex
Length = 252
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 26 EDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTR 85
E S+N + LS +T+E++ Y C N + + + VSS + K P++F
Sbjct: 94 ETSSNTAYMQLSSLTSEDSAVYYCATGNTMVNMPYWGQGTTVTVSSASTK--GPSVFPLA 151
Query: 86 PDT 88
P +
Sbjct: 152 PSS 154
>pdb|2WV0|A Chain A, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From
Bacillus Subtilis
pdb|2WV0|B Chain B, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From
Bacillus Subtilis
pdb|2WV0|C Chain C, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From
Bacillus Subtilis
pdb|2WV0|D Chain D, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From
Bacillus Subtilis
pdb|2WV0|E Chain E, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From
Bacillus Subtilis
pdb|2WV0|F Chain F, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From
Bacillus Subtilis
pdb|2WV0|G Chain G, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From
Bacillus Subtilis
pdb|2WV0|H Chain H, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From
Bacillus Subtilis
pdb|2WV0|I Chain I, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From
Bacillus Subtilis
pdb|2WV0|J Chain J, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From
Bacillus Subtilis
Length = 243
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 138 LTLKRATDDENGTYFIVARNIYGSDR 163
L +KR T +NGT F A+++Y DR
Sbjct: 207 LLIKRTTYLQNGTAFEHAKSVYRGDR 232
>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|B Chain B, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|C Chain C, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
Length = 439
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 23 KYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
+YI N H +L T EAG+ C+++ ++GYT
Sbjct: 125 EYITKLFNYHK-VLPMNTGVEAGETACKLARKWGYT 159
>pdb|2VXS|H Chain H, Structure Of Il-17a In Complex With A Potent, Fully Human
Neutralising Antibody
pdb|2VXS|I Chain I, Structure Of Il-17a In Complex With A Potent, Fully Human
Neutralising Antibody
pdb|2VXS|J Chain J, Structure Of Il-17a In Complex With A Potent, Fully Human
Neutralising Antibody
pdb|2VXS|K Chain K, Structure Of Il-17a In Complex With A Potent, Fully Human
Neutralising Antibody
Length = 225
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 26 EDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTR 85
++S N L ++ + AE+ Y C +G T + + ++ VSS + K P++F
Sbjct: 73 DNSKNTLYLQMNSLRAEDTAVYYCARDLIHGVTRNWGQGTLVTVSSASTK--GPSVFPLA 130
Query: 86 PDTMM----SVALGEDISFSFRLAGSPKP-KVTWMKG 117
P + + ALG + F P+P V+W G
Sbjct: 131 PSSKSTSGGTAALGCLVKDYF-----PQPVTVSWNSG 162
>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|B Chain B, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|C Chain C, Ornithine Aminotransferase Mutant Y85i
Length = 439
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 23 KYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
+YI N H +L T EAG+ C+++ ++GYT
Sbjct: 125 EYITKLFNYHK-VLPMNTGVEAGETACKLARKWGYT 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,088,120
Number of Sequences: 62578
Number of extensions: 195288
Number of successful extensions: 1388
Number of sequences better than 100.0: 222
Number of HSP's better than 100.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 1061
Number of HSP's gapped (non-prelim): 357
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)