Query psy16859
Match_columns 168
No_of_seqs 157 out of 1271
Neff 12.0
Searched_HMMs 46136
Date Fri Aug 16 23:52:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16859.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16859hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 99.9 6.4E-26 1.4E-30 165.1 16.4 150 1-167 358-510 (1051)
2 KOG3513|consensus 99.9 8.8E-25 1.9E-29 159.3 16.0 149 1-166 268-416 (1051)
3 PHA02826 IL-1 receptor-like pr 99.9 4.2E-22 9.1E-27 126.7 16.9 142 3-163 62-215 (227)
4 PHA02785 IL-beta-binding prote 99.9 1.8E-20 4E-25 125.9 18.7 147 1-163 153-319 (326)
5 KOG4221|consensus 99.9 1.3E-20 2.8E-25 138.4 15.1 154 2-167 168-324 (1381)
6 PHA02785 IL-beta-binding prote 99.9 3.9E-20 8.4E-25 124.3 16.3 142 1-163 58-204 (326)
7 KOG4194|consensus 99.9 5.3E-21 1.2E-25 132.5 11.5 126 31-167 573-700 (873)
8 KOG4221|consensus 99.9 1.6E-21 3.4E-26 143.1 8.9 147 1-165 264-410 (1381)
9 KOG4194|consensus 99.8 1.5E-20 3.3E-25 130.4 11.0 149 2-166 640-791 (873)
10 cd05762 Ig8_MLCK Eighth immuno 99.8 3E-19 6.5E-24 99.9 12.1 86 82-168 3-88 (98)
11 cd05747 Ig5_Titin_like M5, fif 99.8 9.4E-19 2E-23 97.1 12.4 89 79-168 3-91 (92)
12 KOG4222|consensus 99.8 1.5E-19 3.2E-24 132.3 9.6 147 1-164 159-306 (1281)
13 cd05894 Ig_C5_MyBP-C C5 immuno 99.8 3.4E-18 7.5E-23 93.3 11.9 80 89-168 4-84 (86)
14 cd05737 Ig_Myomesin_like_C C-t 99.8 4E-18 8.7E-23 94.5 11.7 81 88-168 9-90 (92)
15 cd05892 Ig_Myotilin_C C-termin 99.8 4E-18 8.8E-23 90.4 9.4 66 1-66 10-75 (75)
16 cd05851 Ig3_Contactin-1 Third 99.8 4.8E-18 1E-22 93.3 10.0 83 80-167 2-84 (88)
17 PF07679 I-set: Immunoglobulin 99.8 1.4E-17 3.1E-22 92.1 11.6 87 81-168 2-88 (90)
18 cd04972 Ig_TrkABC_d4 Fourth do 99.8 1.8E-17 3.9E-22 91.5 11.7 81 88-168 8-88 (90)
19 cd04975 Ig4_SCFR_like Fourth i 99.8 1.4E-17 2.9E-22 93.4 10.3 81 88-168 11-97 (101)
20 cd05748 Ig_Titin_like Immunogl 99.8 3.2E-17 6.9E-22 87.3 10.6 72 97-168 1-72 (74)
21 cd05745 Ig3_Peroxidasin Third 99.8 1.2E-17 2.6E-22 88.9 8.6 72 94-168 1-72 (74)
22 cd05852 Ig5_Contactin-1 Fifth 99.8 2.3E-17 4.9E-22 87.2 9.0 70 95-167 1-70 (73)
23 cd05730 Ig3_NCAM-1_like Third 99.7 5.8E-17 1.2E-21 90.5 10.9 79 89-168 12-90 (95)
24 cd05892 Ig_Myotilin_C C-termin 99.7 3.9E-17 8.4E-22 86.6 9.3 70 98-167 1-72 (75)
25 cd05893 Ig_Palladin_C C-termin 99.7 4.5E-17 9.8E-22 86.5 9.3 66 1-66 10-75 (75)
26 cd05744 Ig_Myotilin_C_like Imm 99.7 8E-17 1.7E-21 85.7 9.9 66 1-66 10-75 (75)
27 cd05891 Ig_M-protein_C C-termi 99.7 1.5E-16 3.2E-21 88.1 11.2 81 88-168 9-90 (92)
28 cd05859 Ig4_PDGFR-alpha Fourth 99.7 5.5E-17 1.2E-21 91.0 9.5 80 89-168 12-97 (101)
29 cd04968 Ig3_Contactin_like Thi 99.7 7.4E-17 1.6E-21 88.8 9.9 82 81-167 3-84 (88)
30 cd05743 Ig_Perlecan_D2_like Im 99.7 1E-16 2.2E-21 86.2 9.6 71 95-165 1-71 (78)
31 cd05857 Ig2_FGFR Second immuno 99.7 2.2E-16 4.8E-21 86.4 11.1 79 90-168 4-83 (85)
32 cd04971 Ig_TrKABC_d5 Fifth dom 99.7 1.4E-16 3.1E-21 85.8 9.9 70 99-168 2-78 (81)
33 cd05865 Ig1_NCAM-1 First immun 99.7 2.8E-16 6.2E-21 87.3 10.9 80 89-168 9-93 (96)
34 cd05869 Ig5_NCAM-1 Fifth immun 99.7 4.6E-16 1E-20 87.1 11.8 86 81-167 4-94 (97)
35 cd05723 Ig4_Neogenin Fourth im 99.7 1.8E-16 3.9E-21 83.6 9.6 69 97-168 1-69 (71)
36 cd05893 Ig_Palladin_C C-termin 99.7 1.2E-16 2.7E-21 84.8 8.8 70 98-167 1-72 (75)
37 cd05855 Ig_TrkB_d5 Fifth domai 99.7 1.9E-16 4E-21 84.4 9.3 70 99-168 2-76 (79)
38 cd05866 Ig1_NCAM-2 First immun 99.7 3.8E-16 8.3E-21 86.0 10.8 79 88-167 8-88 (92)
39 cd05863 Ig2_VEGFR-3 Second imm 99.7 6.5E-17 1.4E-21 83.6 7.2 61 98-166 1-61 (67)
40 cd05771 IgC_Tapasin_R Tapasin- 99.7 6.4E-16 1.4E-20 92.1 12.2 117 33-160 2-132 (139)
41 cd05870 Ig5_NCAM-2 Fifth immun 99.7 6.2E-16 1.3E-20 86.7 11.4 80 88-167 9-95 (98)
42 cd05744 Ig_Myotilin_C_like Imm 99.7 3.5E-16 7.6E-21 83.3 9.9 71 98-168 1-73 (75)
43 cd05728 Ig4_Contactin-2-like F 99.7 2.8E-16 6E-21 85.8 9.6 77 88-168 7-83 (85)
44 cd05868 Ig4_NrCAM Fourth immun 99.7 2.7E-16 5.8E-21 84.0 9.3 72 95-167 1-72 (76)
45 cd05867 Ig4_L1-CAM_like Fourth 99.7 3.9E-16 8.5E-21 83.5 9.9 71 95-167 1-72 (76)
46 cd05746 Ig4_Peroxidasin Fourth 99.7 1.4E-16 3.1E-21 83.5 8.0 68 98-168 1-68 (69)
47 cd04969 Ig5_Contactin_like Fif 99.7 3E-16 6.5E-21 83.3 9.0 71 95-168 1-71 (73)
48 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 5.5E-16 1.2E-20 84.6 9.9 65 1-66 22-86 (86)
49 cd04978 Ig4_L1-NrCAM_like Four 99.7 3.3E-16 7E-21 83.9 8.9 72 95-167 1-72 (76)
50 cd05762 Ig8_MLCK Eighth immuno 99.7 5.9E-16 1.3E-20 86.6 10.1 68 1-70 27-94 (98)
51 cd05748 Ig_Titin_like Immunogl 99.7 7.1E-16 1.5E-20 82.1 9.8 64 1-66 11-74 (74)
52 cd05732 Ig5_NCAM-1_like Fifth 99.7 1E-15 2.2E-20 85.7 10.8 80 88-167 9-93 (96)
53 cd05735 Ig8_DSCAM Eight immuno 99.7 1.2E-15 2.7E-20 83.7 10.3 73 95-167 1-78 (88)
54 cd05855 Ig_TrkB_d5 Fifth domai 99.7 8E-16 1.7E-20 81.9 8.8 64 1-65 10-77 (79)
55 cd05750 Ig_Pro_neuregulin Immu 99.7 1.5E-15 3.2E-20 81.1 9.5 71 98-168 1-75 (75)
56 cd05848 Ig1_Contactin-5 First 99.7 4.5E-15 9.7E-20 82.5 11.6 68 94-163 18-86 (94)
57 cd05758 Ig5_KIRREL3-like Fifth 99.7 5.3E-15 1.2E-19 82.9 12.1 81 88-168 9-97 (98)
58 cd05739 Ig3_RPTP_IIa_LAR_like 99.7 1.7E-15 3.7E-20 79.2 9.4 68 95-168 1-68 (69)
59 cd07693 Ig1_Robo First immunog 99.7 3.6E-15 7.8E-20 84.0 11.4 82 80-162 2-90 (100)
60 cd05863 Ig2_VEGFR-3 Second imm 99.7 6.5E-16 1.4E-20 79.9 7.4 56 1-66 10-65 (67)
61 cd05856 Ig2_FGFRL1-like Second 99.7 2E-15 4.3E-20 82.0 9.5 77 90-168 4-80 (82)
62 cd05853 Ig6_Contactin-4 Sixth 99.7 8.8E-16 1.9E-20 83.0 7.9 68 2-69 15-84 (85)
63 cd05876 Ig3_L1-CAM Third immun 99.7 8.2E-16 1.8E-20 81.1 7.6 68 98-168 1-68 (71)
64 cd04976 Ig2_VEGFR Second immun 99.7 8E-16 1.7E-20 81.0 7.5 65 98-166 1-65 (71)
65 cd05852 Ig5_Contactin-1 Fifth 99.7 8.5E-16 1.8E-20 81.2 7.6 61 1-66 13-73 (73)
66 cd04971 Ig_TrKABC_d5 Fifth dom 99.7 2E-15 4.2E-20 81.4 9.0 65 1-66 10-80 (81)
67 cd04973 Ig1_FGFR First immunog 99.7 3.2E-15 6.9E-20 80.4 9.7 75 89-168 3-77 (79)
68 cd04976 Ig2_VEGFR Second immun 99.7 1.2E-15 2.6E-20 80.3 7.8 60 1-66 10-69 (71)
69 cd05864 Ig2_VEGFR-2 Second imm 99.7 7.9E-16 1.7E-20 80.5 6.6 62 98-164 1-62 (70)
70 cd05760 Ig2_PTK7 Second immuno 99.6 3.4E-15 7.3E-20 79.9 8.9 65 98-163 1-65 (77)
71 cd05740 Ig_CEACAM_D4 Fourth im 99.6 7.6E-15 1.6E-19 80.9 10.5 72 88-163 11-82 (91)
72 cd05736 Ig2_Follistatin_like S 99.6 2.8E-15 6.1E-20 80.2 8.5 70 98-167 1-70 (76)
73 cd05859 Ig4_PDGFR-alpha Fourth 99.6 1.6E-15 3.5E-20 85.1 7.8 66 1-67 30-100 (101)
74 cd05764 Ig_2 Subgroup of the i 99.6 4.5E-15 9.7E-20 79.0 9.2 71 95-168 1-72 (74)
75 cd05763 Ig_1 Subgroup of the i 99.6 1.9E-15 4.2E-20 80.6 7.8 70 98-167 1-71 (75)
76 KOG4222|consensus 99.6 1E-15 2.2E-20 112.7 8.7 145 1-162 252-402 (1281)
77 cd05773 Ig8_hNephrin_like Eigh 99.6 1.4E-14 3E-19 82.6 11.4 75 94-168 22-102 (109)
78 cd05850 Ig1_Contactin-2 First 99.6 2.8E-14 6E-19 79.3 12.2 67 95-163 19-86 (94)
79 cd07702 Ig2_VEGFR-1 Second imm 99.6 3.3E-15 7.1E-20 78.3 7.7 61 1-66 10-70 (72)
80 cd05737 Ig_Myomesin_like_C C-t 99.6 6.1E-15 1.3E-19 81.7 9.2 65 1-66 28-92 (92)
81 cd05735 Ig8_DSCAM Eight immuno 99.6 1.1E-14 2.4E-19 79.8 10.2 70 1-70 13-85 (88)
82 cd05725 Ig3_Robo Third immunog 99.6 2.5E-15 5.3E-20 78.9 7.3 66 98-167 1-66 (69)
83 cd05854 Ig6_Contactin-2 Sixth 99.6 1.2E-14 2.5E-19 79.2 10.0 73 96-168 1-79 (85)
84 cd05864 Ig2_VEGFR-2 Second imm 99.6 2.6E-15 5.6E-20 78.5 6.8 59 1-66 10-68 (70)
85 cd05723 Ig4_Neogenin Fourth im 99.6 9.5E-15 2.1E-19 77.0 8.9 61 1-66 11-71 (71)
86 cd05849 Ig1_Contactin-1 First 99.6 3E-14 6.5E-19 78.9 11.2 65 95-163 19-85 (93)
87 cd04975 Ig4_SCFR_like Fourth i 99.6 7.2E-15 1.6E-19 82.3 8.8 66 1-67 31-100 (101)
88 cd05760 Ig2_PTK7 Second immuno 99.6 8.8E-15 1.9E-19 78.3 8.8 63 1-66 10-74 (77)
89 cd05733 Ig6_L1-CAM_like Sixth 99.6 5.5E-15 1.2E-19 79.1 8.0 66 98-163 1-70 (77)
90 cd05867 Ig4_L1-CAM_like Fourth 99.6 1.6E-14 3.4E-19 77.2 9.4 61 1-66 13-75 (76)
91 cd05756 Ig1_IL1R_like First im 99.6 5.4E-15 1.2E-19 81.9 7.8 78 88-167 7-91 (94)
92 cd05731 Ig3_L1-CAM_like Third 99.6 5E-15 1.1E-19 78.2 7.3 68 98-168 1-68 (71)
93 cd05765 Ig_3 Subgroup of the i 99.6 1.1E-14 2.4E-19 78.8 8.9 74 95-168 1-79 (81)
94 cd05858 Ig3_FGFR-2 Third immun 99.6 9.2E-15 2E-19 80.7 8.6 73 95-167 1-86 (90)
95 cd05745 Ig3_Peroxidasin Third 99.6 4.7E-15 1E-19 78.8 7.1 61 1-66 14-74 (74)
96 cd05724 Ig2_Robo Second immuno 99.6 2.8E-14 6E-19 78.2 10.3 73 88-163 4-78 (86)
97 cd04977 Ig1_NCAM-1_like First 99.6 4.2E-14 9.2E-19 78.2 10.9 79 88-167 8-89 (92)
98 cd05874 Ig6_NrCAM Sixth immuno 99.6 1.8E-14 3.9E-19 77.0 8.9 67 98-164 1-71 (77)
99 cd05726 Ig4_Robo Fhird immunog 99.6 1E-14 2.3E-19 80.5 8.2 70 95-167 1-78 (90)
100 cd05743 Ig_Perlecan_D2_like Im 99.6 1.8E-14 3.9E-19 77.4 8.8 64 1-66 13-76 (78)
101 cd05738 Ig2_RPTP_IIa_LAR_like 99.6 2.2E-14 4.8E-19 76.2 9.0 64 98-162 1-64 (74)
102 cd05876 Ig3_L1-CAM Third immun 99.6 7.9E-15 1.7E-19 77.3 7.1 61 1-66 10-70 (71)
103 cd05746 Ig4_Peroxidasin Fourth 99.6 1.1E-14 2.4E-19 76.3 7.5 59 1-64 10-68 (69)
104 cd05868 Ig4_NrCAM Fourth immun 99.6 2.4E-14 5.3E-19 76.4 8.9 63 1-66 13-75 (76)
105 cd05875 Ig6_hNeurofascin_like 99.6 2.5E-14 5.3E-19 76.5 8.9 66 98-163 1-70 (77)
106 cd05749 Ig2_Tyro3_like Second 99.6 3.2E-14 6.8E-19 76.5 9.2 68 88-163 6-74 (81)
107 cd04974 Ig3_FGFR Third immunog 99.6 1.7E-14 3.6E-19 79.6 8.1 73 95-167 1-86 (90)
108 cd05722 Ig1_Neogenin First imm 99.6 6.7E-14 1.5E-18 78.0 10.5 74 88-162 7-86 (95)
109 cd04970 Ig6_Contactin_like Six 99.6 3.1E-14 6.6E-19 77.8 8.9 72 96-167 1-78 (85)
110 cd07702 Ig2_VEGFR-1 Second imm 99.6 1.9E-14 4.1E-19 75.4 7.6 65 98-165 1-65 (72)
111 cd05854 Ig6_Contactin-2 Sixth 99.6 6E-14 1.3E-18 76.4 9.9 68 1-68 12-83 (85)
112 cd04969 Ig5_Contactin_like Fif 99.6 1.7E-14 3.6E-19 76.5 7.5 61 1-66 13-73 (73)
113 cd05763 Ig_1 Subgroup of the i 99.6 2.3E-14 4.9E-19 76.4 7.9 63 1-66 10-74 (75)
114 cd05895 Ig_Pro_neuregulin-1 Im 99.6 6E-14 1.3E-18 75.0 9.5 71 98-168 1-76 (76)
115 cd05857 Ig2_FGFR Second immuno 99.6 5.7E-14 1.2E-18 76.8 9.4 64 1-66 21-85 (85)
116 cd05898 Ig5_KIRREL3 Fifth immu 99.6 2E-13 4.4E-18 75.7 11.5 81 88-168 9-97 (98)
117 cd05865 Ig1_NCAM-1 First immun 99.6 4.2E-14 9.1E-19 78.6 8.9 66 1-66 27-95 (96)
118 cd05730 Ig3_NCAM-1_like Third 99.6 6.8E-14 1.5E-18 78.1 9.8 64 1-67 30-93 (95)
119 cd04978 Ig4_L1-NrCAM_like Four 99.6 6.6E-14 1.4E-18 74.9 9.1 63 1-66 13-75 (76)
120 cd05747 Ig5_Titin_like M5, fif 99.6 7.2E-14 1.6E-18 77.4 9.4 62 1-64 30-91 (92)
121 cd05853 Ig6_Contactin-4 Sixth 99.6 3.1E-14 6.8E-19 76.9 7.7 72 96-167 1-78 (85)
122 cd04967 Ig1_Contactin First Ig 99.6 2.4E-13 5.1E-18 75.2 11.4 69 94-164 18-87 (91)
123 cd05851 Ig3_Contactin-1 Third 99.6 3.2E-14 6.9E-19 78.1 7.8 60 1-66 28-87 (88)
124 cd05725 Ig3_Robo Third immunog 99.6 4.5E-14 9.7E-19 74.0 7.8 60 1-66 10-69 (69)
125 PF07679 I-set: Immunoglobulin 99.6 7.3E-14 1.6E-18 77.2 8.9 64 1-66 27-90 (90)
126 cd05731 Ig3_L1-CAM_like Third 99.6 3.1E-14 6.6E-19 75.2 7.0 61 1-66 10-70 (71)
127 cd05728 Ig4_Contactin-2-like F 99.5 6.4E-14 1.4E-18 76.4 7.9 60 1-66 26-85 (85)
128 cd05752 Ig1_FcgammaR_like Frst 99.5 1.3E-13 2.9E-18 73.6 8.9 75 82-168 3-78 (78)
129 cd05738 Ig2_RPTP_IIa_LAR_like 99.5 1.3E-13 2.8E-18 73.3 8.6 62 1-66 10-73 (74)
130 cd05729 Ig2_FGFR_like Second i 99.5 3.7E-13 8.1E-18 73.5 10.7 79 90-168 4-83 (85)
131 cd05754 Ig3_Perlecan_like Thir 99.5 1.5E-13 3.3E-18 75.0 9.1 75 88-168 9-84 (85)
132 cd05891 Ig_M-protein_C C-termi 99.5 1.8E-13 3.8E-18 75.8 9.3 65 1-66 28-92 (92)
133 cd05742 Ig1_VEGFR_like First i 99.5 7.3E-14 1.6E-18 76.1 7.7 73 95-167 1-80 (84)
134 cd05750 Ig_Pro_neuregulin Immu 99.5 1.2E-13 2.7E-18 73.6 8.1 62 1-63 11-74 (75)
135 cd04972 Ig_TrkABC_d4 Fourth do 99.5 2.6E-13 5.6E-18 74.9 9.5 64 1-66 27-90 (90)
136 cd05869 Ig5_NCAM-1 Fifth immun 99.5 1.8E-13 3.9E-18 76.6 8.9 65 1-66 29-97 (97)
137 cd04970 Ig6_Contactin_like Six 99.5 2.2E-13 4.8E-18 74.4 8.9 68 1-68 12-83 (85)
138 cd05736 Ig2_Follistatin_like S 99.5 2E-13 4.4E-18 72.9 8.5 64 1-67 10-74 (76)
139 cd05895 Ig_Pro_neuregulin-1 Im 99.5 3E-13 6.4E-18 72.3 8.6 62 1-63 11-75 (76)
140 cd05726 Ig4_Robo Fhird immunog 99.5 2.6E-13 5.6E-18 74.9 8.6 65 1-69 13-84 (90)
141 cd05732 Ig5_NCAM-1_like Fifth 99.5 3.1E-13 6.6E-18 75.6 8.6 65 1-66 28-96 (96)
142 cd05882 Ig1_Necl-1 First (N-te 99.5 2.7E-12 5.8E-17 71.2 11.7 81 88-168 5-95 (95)
143 cd04973 Ig1_FGFR First immunog 99.5 2.6E-13 5.7E-18 73.0 7.4 58 3-66 22-79 (79)
144 cd05734 Ig7_DSCAM Seventh immu 99.5 2.7E-13 5.9E-18 73.0 7.5 62 98-162 1-70 (79)
145 cd07701 Ig1_Necl-3 First (N-te 99.5 1.5E-12 3.3E-17 72.3 10.6 81 88-168 5-95 (95)
146 cd05861 Ig1_PDGFR-alphabeta Fr 99.5 5.4E-13 1.2E-17 72.5 8.6 66 95-160 1-70 (84)
147 cd05757 Ig2_IL1R_like Second i 99.5 4.4E-13 9.6E-18 73.8 8.3 60 1-66 27-86 (92)
148 cd05870 Ig5_NCAM-2 Fifth immun 99.5 4.7E-13 1E-17 75.0 8.5 65 1-66 28-98 (98)
149 cd05773 Ig8_hNephrin_like Eigh 99.5 9E-13 1.9E-17 75.2 9.7 68 1-68 35-106 (109)
150 cd05757 Ig2_IL1R_like Second i 99.5 4E-13 8.7E-18 74.0 7.6 74 89-166 4-82 (92)
151 cd05849 Ig1_Contactin-1 First 99.5 9.8E-13 2.1E-17 72.8 9.2 59 1-64 31-91 (93)
152 cd05756 Ig1_IL1R_like First im 99.5 3.7E-13 8E-18 74.6 7.1 62 2-66 32-94 (94)
153 cd04968 Ig3_Contactin_like Thi 99.5 9E-13 2E-17 72.4 8.5 60 1-66 28-87 (88)
154 cd05724 Ig2_Robo Second immuno 99.5 7.4E-13 1.6E-17 72.5 7.9 61 1-65 24-85 (86)
155 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 1.1E-12 2.4E-17 68.5 7.8 56 1-64 13-68 (69)
156 cd05856 Ig2_FGFRL1-like Second 99.4 5.1E-13 1.1E-17 72.5 6.7 62 1-66 21-82 (82)
157 cd05764 Ig_2 Subgroup of the i 99.4 1.2E-12 2.5E-17 69.6 7.3 61 1-66 13-74 (74)
158 cd04974 Ig3_FGFR Third immunog 99.4 1.3E-12 2.7E-17 72.1 7.5 66 1-66 13-89 (90)
159 cd05875 Ig6_hNeurofascin_like 99.4 3.4E-12 7.4E-17 68.2 8.9 57 1-60 10-71 (77)
160 cd05866 Ig1_NCAM-2 First immun 99.4 3.2E-12 6.9E-17 70.4 9.0 63 1-66 27-91 (92)
161 cd05740 Ig_CEACAM_D4 Fourth im 99.4 4.6E-12 1E-16 69.8 9.0 59 3-66 31-90 (91)
162 cd04979 Ig_Semaphorin_C Immuno 99.4 2.5E-12 5.3E-17 70.8 7.8 77 88-167 4-83 (89)
163 cd05858 Ig3_FGFR-2 Third immun 99.4 2.9E-12 6.2E-17 70.7 8.0 66 1-66 13-89 (90)
164 cd05727 Ig2_Contactin-2-like S 99.4 1.6E-12 3.4E-17 71.6 6.7 75 88-162 11-86 (96)
165 cd05873 Ig_Sema4D_like Immunog 99.4 9.7E-12 2.1E-16 67.5 9.4 68 88-159 4-71 (87)
166 cd05733 Ig6_L1-CAM_like Sixth 99.4 3.1E-12 6.7E-17 68.4 7.4 57 1-60 10-71 (77)
167 cd05897 Ig2_IL1R2_like Second 99.4 4.3E-12 9.3E-17 69.9 7.9 54 2-58 28-81 (95)
168 cd05848 Ig1_Contactin-5 First 99.4 6.6E-12 1.4E-16 69.7 8.7 55 1-60 31-87 (94)
169 cd05850 Ig1_Contactin-2 First 99.4 1.1E-11 2.3E-16 68.9 9.3 59 1-64 31-92 (94)
170 smart00408 IGc2 Immunoglobulin 99.4 5.5E-12 1.2E-16 64.6 7.8 63 94-160 1-63 (63)
171 cd05734 Ig7_DSCAM Seventh immu 99.4 5E-12 1.1E-16 68.0 7.6 61 1-65 10-78 (79)
172 cd05874 Ig6_NrCAM Sixth immuno 99.4 1.5E-11 3.2E-16 65.7 9.2 57 1-60 10-71 (77)
173 cd07690 Ig1_CD4 First immunogl 99.4 8.4E-12 1.8E-16 68.8 8.4 74 90-163 2-92 (94)
174 cd05873 Ig_Sema4D_like Immunog 99.4 7.4E-12 1.6E-16 67.9 8.0 49 2-55 23-71 (87)
175 cd05717 Ig1_Necl-1-3_like Firs 99.4 3.3E-11 7.2E-16 67.1 10.9 81 88-168 5-95 (95)
176 cd05765 Ig_3 Subgroup of the i 99.4 3.3E-12 7.1E-17 69.1 6.3 62 1-66 13-81 (81)
177 cd05860 Ig4_SCFR Fourth immuno 99.4 4.1E-11 9E-16 66.2 10.6 81 88-168 11-97 (101)
178 cd05729 Ig2_FGFR_like Second i 99.3 2.8E-11 6.2E-16 66.0 9.2 65 1-66 21-85 (85)
179 cd05753 Ig2_FcgammaR_like Seco 99.3 2.8E-11 6.1E-16 65.6 8.3 65 90-162 9-74 (83)
180 smart00410 IG_like Immunoglobu 99.3 1.9E-10 4E-15 62.5 11.7 79 89-167 3-82 (86)
181 smart00409 IG Immunoglobulin. 99.3 1.9E-10 4E-15 62.5 11.7 79 89-167 3-82 (86)
182 cd07693 Ig1_Robo First immunog 99.3 5.2E-11 1.1E-15 66.9 9.3 65 1-66 28-99 (100)
183 cd05881 Ig1_Necl-2 First (N-te 99.3 3.6E-10 7.8E-15 62.4 11.7 80 88-167 5-94 (95)
184 cd04967 Ig1_Contactin First Ig 99.3 4.8E-11 1E-15 65.9 8.3 55 1-60 31-87 (91)
185 cd04977 Ig1_NCAM-1_like First 99.3 5.3E-11 1.1E-15 65.8 8.5 61 4-65 29-91 (92)
186 PF00047 ig: Immunoglobulin do 99.3 3.8E-11 8.2E-16 61.9 7.0 61 95-155 1-64 (64)
187 cd05758 Ig5_KIRREL3-like Fifth 99.3 1.1E-10 2.4E-15 65.4 9.1 64 1-64 28-97 (98)
188 cd05722 Ig1_Neogenin First imm 99.3 7.5E-11 1.6E-15 65.7 8.4 61 1-65 26-94 (95)
189 cd05742 Ig1_VEGFR_like First i 99.3 3.6E-11 7.8E-16 65.4 6.7 65 2-66 16-83 (84)
190 cd05897 Ig2_IL1R2_like Second 99.3 6.3E-11 1.4E-15 65.3 7.6 76 90-166 5-85 (95)
191 cd05862 Ig1_VEGFR First immuno 99.3 7.8E-11 1.7E-15 64.3 7.6 72 95-166 1-80 (86)
192 cd05845 Ig2_L1-CAM_like Second 99.2 8.3E-11 1.8E-15 64.7 7.7 72 88-162 11-85 (95)
193 cd05871 Ig_Semaphorin_classIII 99.2 9.3E-11 2E-15 64.6 7.6 73 89-166 5-84 (91)
194 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 1.7E-10 3.6E-15 62.7 8.5 66 1-66 13-82 (84)
195 PHA02826 IL-1 receptor-like pr 99.2 1.1E-10 2.4E-15 74.8 8.9 51 1-55 161-211 (227)
196 PF13895 Ig_2: Immunoglobulin 99.2 2.1E-10 4.5E-15 61.7 8.1 67 90-166 9-76 (80)
197 cd05882 Ig1_Necl-1 First (N-te 99.2 2E-10 4.3E-15 63.7 7.7 53 1-53 24-83 (95)
198 cd05727 Ig2_Contactin-2-like S 99.2 8E-11 1.7E-15 64.9 5.6 53 1-56 31-84 (96)
199 cd07701 Ig1_Necl-3 First (N-te 99.2 3.2E-10 7E-15 63.0 8.1 64 1-66 24-95 (95)
200 cd04979 Ig_Semaphorin_C Immuno 99.2 2E-10 4.4E-15 63.2 7.0 60 2-66 23-86 (89)
201 cd05885 Ig2_Necl-4 Second immu 99.1 3.3E-10 7.1E-15 60.3 6.7 65 97-162 1-69 (80)
202 PHA03376 BARF1; Provisional 99.1 2.1E-09 4.5E-14 65.3 10.8 87 20-118 76-162 (221)
203 cd05896 Ig1_IL1RAPL-1_like Fir 99.1 4.9E-10 1.1E-14 62.2 7.2 59 3-66 40-104 (104)
204 cd05749 Ig2_Tyro3_like Second 99.1 4.2E-10 9.2E-15 60.5 6.2 50 1-60 25-75 (81)
205 cd05885 Ig2_Necl-4 Second immu 99.1 1.5E-09 3.3E-14 57.8 7.6 56 1-58 12-69 (80)
206 cd04983 IgV_TCR_alpha_like Imm 99.1 3.6E-09 7.8E-14 60.4 9.7 72 88-159 6-93 (109)
207 cd05860 Ig4_SCFR Fourth immuno 99.1 2.5E-09 5.5E-14 59.1 8.5 67 1-67 30-100 (101)
208 cd05871 Ig_Semaphorin_classIII 99.1 2E-09 4.3E-14 59.3 8.0 61 1-66 22-88 (91)
209 cd05754 Ig3_Perlecan_like Thir 99.1 7.6E-10 1.7E-14 60.3 6.3 56 1-64 29-84 (85)
210 cd05759 Ig2_KIRREL3-like Secon 99.1 2.6E-09 5.7E-14 57.8 8.2 63 98-160 2-70 (82)
211 cd05898 Ig5_KIRREL3 Fifth immu 99.0 5.9E-09 1.3E-13 57.9 8.6 64 1-64 28-97 (98)
212 cd05896 Ig1_IL1RAPL-1_like Fir 99.0 5.7E-09 1.2E-13 57.9 8.5 76 89-166 9-100 (104)
213 smart00408 IGc2 Immunoglobulin 99.0 3.1E-09 6.6E-14 54.1 7.0 50 1-56 14-63 (63)
214 PF13927 Ig_3: Immunoglobulin 99.0 7.4E-10 1.6E-14 58.7 4.7 57 98-157 18-75 (75)
215 cd05899 IgV_TCR_beta Immunoglo 99.0 7.9E-09 1.7E-13 59.1 9.0 71 88-159 6-95 (110)
216 cd00099 IgV Immunoglobulin var 99.0 6E-09 1.3E-13 59.1 8.1 70 91-160 2-91 (105)
217 cd05759 Ig2_KIRREL3-like Secon 99.0 6.3E-09 1.4E-13 56.3 7.8 58 1-58 12-72 (82)
218 cd05845 Ig2_L1-CAM_like Second 99.0 9E-10 1.9E-14 60.6 4.2 51 1-55 31-82 (95)
219 cd05872 Ig_Sema4B_like Immunog 99.0 6.5E-09 1.4E-13 56.1 7.2 64 88-156 4-67 (85)
220 cd04980 IgV_L_kappa Immunoglob 98.9 1.8E-08 3.9E-13 57.2 9.0 71 88-158 8-93 (106)
221 cd05751 Ig1_LILRB1_like First 98.9 1.3E-08 2.8E-13 56.2 7.9 72 81-158 4-75 (91)
222 cd05753 Ig2_FcgammaR_like Seco 98.9 3.5E-09 7.7E-14 57.3 5.1 47 2-58 28-74 (83)
223 cd05713 Ig_MOG_like Immunoglob 98.9 2E-08 4.4E-13 56.4 8.3 38 29-66 62-99 (100)
224 smart00409 IG Immunoglobulin. 98.9 5.1E-08 1.1E-12 52.7 9.7 63 2-66 22-85 (86)
225 smart00410 IG_like Immunoglobu 98.9 5.1E-08 1.1E-12 52.7 9.7 63 2-66 22-85 (86)
226 cd05862 Ig1_VEGFR First immuno 98.9 1.2E-08 2.5E-13 55.7 6.9 64 3-66 17-84 (86)
227 cd05717 Ig1_Necl-1-3_like Firs 98.9 2E-08 4.2E-13 55.9 8.0 63 2-65 25-94 (95)
228 cd05714 Ig_CSPGs_LP Immunoglob 98.9 4.8E-08 1E-12 55.5 9.2 74 94-167 1-99 (106)
229 cd05900 Ig_Aggrecan Immunoglob 98.9 2.7E-08 5.9E-13 56.8 8.0 74 94-167 1-105 (112)
230 cd05774 Ig_CEACAM_D1 First imm 98.9 2E-08 4.4E-13 56.6 7.4 76 91-166 9-101 (105)
231 cd04982 IgV_TCR_gamma Immunogl 98.9 3.3E-08 7.1E-13 57.1 8.5 70 88-157 6-98 (116)
232 cd05713 Ig_MOG_like Immunoglob 98.9 5.1E-08 1.1E-12 54.8 9.0 33 135-167 64-96 (100)
233 cd05877 Ig_LP_like Immunoglobu 98.9 3.7E-08 8.1E-13 55.9 8.4 75 94-168 1-100 (106)
234 cd07690 Ig1_CD4 First immunogl 98.9 1.2E-08 2.6E-13 56.4 5.8 57 2-58 20-91 (94)
235 PF00047 ig: Immunoglobulin do 98.8 8E-09 1.7E-13 53.1 4.7 49 2-51 15-64 (64)
236 cd05880 Ig_EVA1 Immunoglobulin 98.8 1.5E-07 3.2E-12 54.3 10.0 73 88-160 6-103 (115)
237 cd04984 IgV_L_lambda Immunoglo 98.8 5.5E-08 1.2E-12 54.4 7.9 68 91-158 2-85 (98)
238 cd05718 Ig1_PVR_like First imm 98.8 8.8E-08 1.9E-12 53.6 8.7 72 96-167 1-94 (98)
239 cd05872 Ig_Sema4B_like Immunog 98.8 5.5E-08 1.2E-12 52.5 7.3 58 2-66 23-80 (85)
240 cd05877 Ig_LP_like Immunoglobu 98.8 9.1E-08 2E-12 54.4 8.6 39 29-67 65-103 (106)
241 cd00098 IgC Immunoglobulin Con 98.8 4.8E-08 1E-12 54.3 7.2 69 93-161 11-87 (95)
242 cd05883 Ig2_Necl-2 Second immu 98.8 8.7E-08 1.9E-12 51.3 7.8 62 98-159 2-67 (82)
243 cd05752 Ig1_FcgammaR_like Frst 98.8 1.7E-08 3.6E-13 54.0 5.0 38 4-54 31-68 (78)
244 cd05761 Ig2_Necl-1-4_like Seco 98.8 1.7E-07 3.6E-12 50.7 8.9 64 98-161 2-70 (82)
245 cd05711 Ig_FcalphaRI Immunoglo 98.8 8.7E-08 1.9E-12 53.1 7.9 66 90-156 10-75 (94)
246 cd05755 Ig2_ICAM-1_like Second 98.8 1.2E-07 2.5E-12 52.8 8.3 72 90-161 11-87 (100)
247 cd05879 Ig_P0 Immunoglobulin ( 98.8 9.7E-08 2.1E-12 54.9 8.1 41 20-60 67-108 (116)
248 cd05879 Ig_P0 Immunoglobulin ( 98.8 2E-07 4.2E-12 53.6 9.1 73 88-160 6-104 (116)
249 cd05718 Ig1_PVR_like First imm 98.8 1.3E-07 2.8E-12 52.9 8.1 37 30-66 60-97 (98)
250 cd05741 Ig_CEACAM_D1_like Firs 98.8 1.1E-07 2.4E-12 52.5 7.7 67 95-161 1-82 (92)
251 cd05775 Ig_SLAM-CD84_like_N N- 98.7 7.6E-08 1.6E-12 53.7 6.8 70 93-162 2-87 (97)
252 cd05878 Ig_Aggrecan_like Immun 98.7 2.1E-07 4.6E-12 53.1 8.2 73 94-166 1-102 (110)
253 cd05714 Ig_CSPGs_LP Immunoglob 98.7 2.8E-07 6.2E-12 52.3 8.6 39 29-67 65-103 (106)
254 cd07705 Ig2_Necl-1 Second immu 98.7 5.5E-07 1.2E-11 48.7 8.6 65 98-162 2-72 (83)
255 cd05884 Ig2_Necl-3 Second immu 98.7 3.8E-07 8.3E-12 49.3 7.9 64 98-161 2-71 (83)
256 cd05715 Ig_P0-like Immunoglobu 98.6 8.5E-07 1.8E-11 51.2 9.3 73 88-160 6-104 (116)
257 PF13895 Ig_2: Immunoglobulin 98.6 1.5E-07 3.3E-12 50.4 5.7 54 1-66 26-80 (80)
258 cd05888 Ig1_Nectin-4_like Frst 98.6 7.7E-07 1.7E-11 50.0 8.7 47 20-66 51-99 (100)
259 cd05716 Ig_pIgR Immunoglobulin 98.6 4.7E-07 1E-11 50.6 7.8 70 90-159 2-87 (98)
260 cd05886 Ig1_Nectin-1_like Firs 98.6 2.6E-07 5.6E-12 51.6 6.5 47 20-66 51-98 (99)
261 cd07706 IgV_TCR_delta Immunogl 98.6 6.3E-07 1.4E-11 51.7 8.4 70 88-157 7-93 (116)
262 cd05774 Ig_CEACAM_D1 First imm 98.6 5.3E-07 1.1E-11 50.9 7.6 24 32-55 70-93 (105)
263 cd05901 Ig_Versican Immunoglob 98.6 2.8E-06 6E-11 48.7 9.8 48 20-67 65-114 (117)
264 cd05902 Ig_Neurocan Immunoglob 98.6 5.3E-07 1.2E-11 51.3 6.9 48 20-67 58-107 (110)
265 cd00096 Ig Immunoglobulin doma 98.6 1.2E-06 2.6E-11 45.2 7.9 66 98-163 1-70 (74)
266 cd05878 Ig_Aggrecan_like Immun 98.6 1.9E-06 4E-11 49.3 8.9 39 29-67 69-107 (110)
267 cd05761 Ig2_Necl-1-4_like Seco 98.5 1.1E-06 2.3E-11 47.5 7.5 54 1-56 12-69 (82)
268 cd05881 Ig1_Necl-2 First (N-te 98.5 1.8E-06 3.9E-11 47.8 8.3 37 18-54 48-84 (95)
269 cd05887 Ig1_Nectin-3_like Firs 98.5 2.2E-06 4.9E-11 47.5 8.6 72 96-167 1-92 (96)
270 cd05888 Ig1_Nectin-4_like Frst 98.5 2.2E-06 4.8E-11 48.1 8.8 32 135-166 63-95 (100)
271 cd05720 Ig_CD8_alpha Immunoglo 98.5 9.9E-07 2.1E-11 49.9 7.3 66 92-157 3-90 (104)
272 cd07700 IgV_CD8_beta Immunoglo 98.5 1.2E-06 2.7E-11 49.8 7.7 68 91-158 2-94 (107)
273 cd05900 Ig_Aggrecan Immunoglob 98.5 1.9E-06 4.1E-11 49.2 8.3 48 20-67 60-109 (112)
274 cd05887 Ig1_Nectin-3_like Firs 98.5 1.9E-06 4.1E-11 47.8 8.0 47 20-66 48-95 (96)
275 KOG3515|consensus 98.5 6.7E-07 1.5E-11 65.6 7.8 139 2-158 36-185 (741)
276 cd05902 Ig_Neurocan Immunoglob 98.5 2.6E-06 5.7E-11 48.5 8.6 32 135-166 71-102 (110)
277 cd05883 Ig2_Necl-2 Second immu 98.5 1.8E-06 3.9E-11 46.2 7.4 66 1-67 12-80 (82)
278 cd05775 Ig_SLAM-CD84_like_N N- 98.5 2E-06 4.3E-11 48.0 7.9 38 29-66 58-96 (97)
279 cd05741 Ig_CEACAM_D1_like Firs 98.5 6E-07 1.3E-11 49.5 5.6 25 32-56 57-81 (92)
280 cd05846 Ig1_MRC-OX-2_like Firs 98.5 3.5E-06 7.6E-11 47.0 8.5 72 95-166 1-92 (97)
281 cd07699 IgC_L Immunoglobulin C 98.5 1.1E-06 2.4E-11 49.3 6.3 70 91-160 13-90 (100)
282 cd05772 IgC_SIRP Signal-regula 98.5 8.7E-06 1.9E-10 46.5 9.9 69 91-159 17-92 (111)
283 cd05886 Ig1_Nectin-1_like Firs 98.5 5.7E-06 1.2E-10 46.2 9.0 32 136-167 63-95 (99)
284 cd07705 Ig2_Necl-1 Second immu 98.5 1.7E-06 3.7E-11 46.8 6.7 55 1-56 12-70 (83)
285 cd05846 Ig1_MRC-OX-2_like Firs 98.5 2.2E-06 4.8E-11 47.8 7.3 38 29-66 58-96 (97)
286 PF07686 V-set: Immunoglobulin 98.4 3.5E-06 7.5E-11 48.2 8.4 71 88-158 9-101 (114)
287 cd05901 Ig_Versican Immunoglob 98.4 6.5E-06 1.4E-10 47.2 9.1 33 135-167 78-110 (117)
288 cd05889 Ig1_DNAM-1_like First 98.4 7E-06 1.5E-10 45.5 8.9 34 135-168 59-93 (96)
289 PHA02987 Ig domain OX-2-like p 98.4 3.2E-06 7E-11 51.8 7.9 73 88-160 23-110 (189)
290 cd05889 Ig1_DNAM-1_like First 98.4 8E-06 1.7E-10 45.3 8.6 42 20-61 48-90 (96)
291 cd07694 Ig2_CD4 Second immunog 98.4 1E-05 2.2E-10 43.5 8.4 68 91-164 10-79 (88)
292 cd05712 Ig_Siglec_N Immunoglob 98.4 1.4E-05 3E-10 46.4 9.7 71 88-158 7-102 (119)
293 cd04983 IgV_TCR_alpha_like Imm 98.4 3E-06 6.5E-11 48.3 6.5 54 2-55 26-93 (109)
294 cd05884 Ig2_Necl-3 Second immu 98.3 5.6E-06 1.2E-10 44.7 7.1 54 1-55 12-69 (83)
295 cd05847 IgC_CH2_IgE CH2 domain 98.3 6.9E-06 1.5E-10 45.4 7.5 70 94-163 13-90 (94)
296 KOG3515|consensus 98.3 2.8E-06 6.1E-11 62.5 7.4 157 1-167 328-489 (741)
297 cd07698 IgC_MHC_I_alpha3 Class 98.3 1.3E-05 2.8E-10 44.3 8.5 66 95-160 14-84 (93)
298 cd05766 IgC_MHC_II_beta Class 98.3 3.2E-05 6.9E-10 42.8 10.0 70 93-162 12-86 (94)
299 smart00407 IGc1 Immunoglobulin 98.3 1E-05 2.2E-10 42.8 7.5 62 98-159 2-71 (75)
300 cd05899 IgV_TCR_beta Immunoglo 98.3 3.7E-06 8.1E-11 48.0 5.8 35 20-54 60-94 (110)
301 PHA02987 Ig domain OX-2-like p 98.3 1.4E-05 2.9E-10 49.1 8.3 67 3-69 45-124 (189)
302 PF08205 C2-set_2: CD80-like C 98.3 1.4E-05 3.1E-10 43.8 7.5 67 95-161 14-86 (89)
303 cd00099 IgV Immunoglobulin var 98.2 6.3E-06 1.4E-10 46.6 6.1 55 2-56 20-91 (105)
304 cd04981 IgV_H Immunoglobulin ( 98.2 2E-05 4.3E-10 45.6 8.2 70 88-157 5-97 (117)
305 cd05751 Ig1_LILRB1_like First 98.2 4.7E-06 1E-10 45.9 5.2 48 2-54 28-75 (91)
306 cd05768 IgC_CH4 CH4 domain (fo 98.2 1E-05 2.3E-10 45.5 6.5 70 92-161 13-93 (102)
307 cd00098 IgC Immunoglobulin Con 98.2 6.3E-06 1.4E-10 45.7 5.5 56 1-56 26-86 (95)
308 smart00407 IGc1 Immunoglobulin 98.2 1.7E-05 3.7E-10 42.0 6.8 55 1-55 12-71 (75)
309 cd05769 IgC_TCR_beta T cell re 98.2 2.2E-05 4.8E-10 45.0 7.6 72 91-162 14-95 (115)
310 cd04982 IgV_TCR_gamma Immunogl 98.2 1.4E-05 3E-10 46.2 6.4 35 19-53 63-98 (116)
311 cd04984 IgV_L_lambda Immunoglo 98.2 2.9E-05 6.2E-10 43.4 7.5 34 20-54 52-85 (98)
312 smart00406 IGv Immunoglobulin 98.1 1.7E-05 3.7E-10 42.4 6.2 59 97-155 1-81 (81)
313 cd00096 Ig Immunoglobulin doma 98.1 2.8E-05 6E-10 39.9 6.9 54 2-55 11-66 (74)
314 PF13927 Ig_3: Immunoglobulin 98.1 2.3E-06 5E-11 45.0 2.7 23 31-53 53-75 (75)
315 cd05716 Ig_pIgR Immunoglobulin 98.1 2.9E-05 6.2E-10 43.4 7.1 53 3-55 22-87 (98)
316 cd05767 IgC_MHC_II_alpha Class 98.1 0.00011 2.3E-09 40.7 9.0 64 94-160 14-85 (94)
317 cd05770 IgC_beta2m Class I maj 98.1 0.00013 2.9E-09 40.2 9.2 69 92-160 12-84 (93)
318 PHA02633 hypothetical protein; 98.1 2.2E-05 4.8E-10 39.0 5.2 36 33-68 19-54 (63)
319 cd07696 IgC_CH3 CH3 domain (th 98.1 3.1E-05 6.8E-10 43.0 6.3 71 91-161 10-88 (96)
320 cd05715 Ig_P0-like Immunoglobu 98.1 3E-05 6.5E-10 44.8 6.4 29 29-57 77-105 (116)
321 cd04980 IgV_L_kappa Immunoglob 98.0 3.4E-05 7.3E-10 43.8 6.5 34 20-54 60-93 (106)
322 PHA03376 BARF1; Provisional 98.0 6.3E-05 1.4E-09 46.3 6.9 70 89-158 20-109 (221)
323 cd04986 IgC_CH2 CH2 domain (se 97.9 6.4E-05 1.4E-09 41.9 6.1 78 81-160 6-90 (99)
324 cd07694 Ig2_CD4 Second immunog 97.9 0.00014 3.1E-09 39.2 6.9 57 2-66 29-85 (88)
325 PF07654 C1-set: Immunoglobuli 97.9 0.00012 2.5E-09 39.6 6.9 65 94-161 7-79 (83)
326 PF07686 V-set: Immunoglobulin 97.9 9.7E-05 2.1E-09 42.1 6.3 35 20-54 66-101 (114)
327 cd05880 Ig_EVA1 Immunoglobulin 97.9 3.5E-05 7.5E-10 44.4 4.3 29 29-57 76-104 (115)
328 cd07697 IgC_TCR_gamma T cell r 97.9 0.00031 6.7E-09 39.0 7.8 65 92-158 13-84 (96)
329 cd05755 Ig2_ICAM-1_like Second 97.8 9E-05 2E-09 41.4 5.4 55 1-57 29-87 (100)
330 cd05772 IgC_SIRP Signal-regula 97.8 0.0003 6.5E-09 40.2 7.6 53 1-55 34-92 (111)
331 cd07689 Ig2_VCAM-1 Second immu 97.8 0.00031 6.7E-09 38.8 7.2 68 92-160 12-87 (99)
332 cd07692 Ig_CD3_epsilon Immunog 97.8 0.00013 2.8E-09 37.0 5.2 53 92-158 4-56 (65)
333 PF08205 C2-set_2: CD80-like C 97.8 0.00017 3.8E-09 39.4 6.2 56 1-56 27-85 (89)
334 cd05712 Ig_Siglec_N Immunoglob 97.8 0.00019 4.2E-09 41.6 6.5 35 20-54 67-102 (119)
335 cd07706 IgV_TCR_delta Immunogl 97.8 0.00017 3.7E-09 41.6 6.1 36 19-54 58-94 (116)
336 cd07700 IgV_CD8_beta Immunoglo 97.7 0.00024 5.2E-09 40.4 6.2 34 20-53 59-93 (107)
337 cd04985 IgC_CH1 CH1 domain (fi 97.7 0.00062 1.3E-08 37.8 7.6 66 94-160 15-88 (95)
338 cd05719 Ig2_PVR_like Second im 97.7 0.0005 1.1E-08 38.2 7.0 54 1-58 28-85 (95)
339 PF11465 Receptor_2B4: Natural 97.7 0.0001 2.2E-09 41.0 4.0 43 21-66 63-106 (108)
340 smart00406 IGv Immunoglobulin 97.6 8.6E-05 1.9E-09 39.6 3.4 32 20-51 49-81 (81)
341 cd05719 Ig2_PVR_like Second im 97.6 0.0015 3.2E-08 36.3 7.8 63 95-160 15-83 (95)
342 cd07698 IgC_MHC_I_alpha3 Class 97.5 0.00076 1.7E-08 37.2 6.5 55 1-55 27-83 (93)
343 cd07703 Ig2_Nectin-2_like Seco 97.5 0.0016 3.6E-08 36.1 7.7 63 96-161 16-84 (95)
344 cd05711 Ig_FcalphaRI Immunoglo 97.5 0.00044 9.6E-09 38.3 4.9 48 4-53 29-76 (94)
345 PHA03269 envelope glycoprotein 97.4 0.0069 1.5E-07 43.0 11.1 81 30-123 287-373 (566)
346 cd05771 IgC_Tapasin_R Tapasin- 97.4 0.00095 2.1E-08 39.8 6.4 55 1-55 66-131 (139)
347 cd07699 IgC_L Immunoglobulin C 97.4 0.00063 1.4E-08 38.2 5.2 55 1-55 30-89 (100)
348 cd05847 IgC_CH2_IgE CH2 domain 97.4 0.0014 3.1E-08 36.3 6.4 55 1-55 27-86 (94)
349 PHA03273 envelope glycoprotein 97.4 0.011 2.3E-07 41.7 11.8 114 32-156 198-322 (486)
350 cd05770 IgC_beta2m Class I maj 97.4 0.0013 2.8E-08 36.3 6.1 54 1-55 28-83 (93)
351 PF02124 Marek_A: Marek's dise 97.4 0.013 2.8E-07 37.3 15.6 102 5-121 8-117 (211)
352 cd07703 Ig2_Nectin-2_like Seco 97.4 0.0021 4.5E-08 35.7 6.8 60 1-64 28-91 (95)
353 cd05721 IgV_CTLA-4 Immunoglobu 97.4 0.0042 9.2E-08 35.5 8.1 68 89-156 7-94 (115)
354 cd05766 IgC_MHC_II_beta Class 97.4 0.0017 3.8E-08 35.9 6.4 52 1-55 27-83 (94)
355 cd05720 Ig_CD8_alpha Immunoglo 97.3 0.00049 1.1E-08 38.9 4.1 32 21-53 59-90 (104)
356 cd07704 Ig2_Nectin-3-4_like Se 97.3 0.0011 2.5E-08 36.7 5.2 71 88-159 9-84 (97)
357 PF07354 Sp38: Zona-pellucida- 97.3 0.00065 1.4E-08 44.1 4.5 49 2-55 11-60 (271)
358 PHA03270 envelope glycoprotein 97.2 0.022 4.7E-07 39.9 11.7 81 32-123 182-265 (466)
359 cd05767 IgC_MHC_II_alpha Class 97.2 0.0021 4.5E-08 35.6 5.9 52 1-55 28-84 (94)
360 cd04981 IgV_H Immunoglobulin ( 97.2 0.0018 4E-08 37.4 5.8 34 20-53 63-97 (117)
361 cd07691 Ig_CD3_gamma_delta Imm 97.2 0.0012 2.7E-08 33.7 4.4 37 5-53 18-54 (69)
362 PF07654 C1-set: Immunoglobuli 97.2 0.0024 5.3E-08 34.4 5.9 52 1-55 21-77 (83)
363 PHA03271 envelope glycoprotein 97.2 0.02 4.4E-07 39.9 10.9 84 29-124 204-292 (490)
364 cd07697 IgC_TCR_gamma T cell r 97.1 0.0025 5.4E-08 35.4 5.3 52 1-54 29-84 (96)
365 PHA02633 hypothetical protein; 97.1 0.0017 3.8E-08 32.4 3.9 30 136-165 18-47 (63)
366 cd05768 IgC_CH4 CH4 domain (fo 97.0 0.0037 8E-08 35.2 5.2 55 1-55 29-91 (102)
367 cd07691 Ig_CD3_gamma_delta Imm 97.0 0.0044 9.5E-08 31.8 4.9 49 95-157 6-54 (69)
368 cd05769 IgC_TCR_beta T cell re 96.9 0.007 1.5E-07 34.8 6.3 58 1-58 31-95 (115)
369 PF08204 V-set_CD47: CD47 immu 96.9 0.00057 1.2E-08 39.8 1.7 74 93-167 25-116 (130)
370 PHA03270 envelope glycoprotein 96.9 0.082 1.8E-06 37.3 12.2 104 5-123 253-363 (466)
371 cd07696 IgC_CH3 CH3 domain (th 96.8 0.013 2.8E-07 32.6 6.4 51 4-55 32-86 (96)
372 KOG4597|consensus 96.6 0.0054 1.2E-07 43.3 5.0 80 88-167 204-288 (560)
373 cd07704 Ig2_Nectin-3-4_like Se 96.5 0.017 3.7E-07 32.1 5.7 51 1-55 30-84 (97)
374 PHA02982 hypothetical protein; 96.5 0.013 2.7E-07 37.0 5.4 73 89-161 33-125 (251)
375 cd04985 IgC_CH1 CH1 domain (fi 96.5 0.017 3.7E-07 32.1 5.5 50 4-55 33-87 (95)
376 PHA03283 envelope glycoprotein 96.4 0.22 4.9E-06 36.1 13.6 85 32-116 134-233 (542)
377 PF07354 Sp38: Zona-pellucida- 96.3 0.011 2.4E-07 38.6 4.5 49 108-159 11-60 (271)
378 PHA02914 Immunoglobulin-like d 96.2 0.27 5.9E-06 34.5 12.8 71 88-158 272-368 (500)
379 PF08204 V-set_CD47: CD47 immu 96.1 0.035 7.7E-07 32.6 5.7 61 5-66 48-119 (130)
380 KOG1480|consensus 96.1 0.0033 7.2E-08 46.9 1.6 60 2-66 158-218 (909)
381 cd07692 Ig_CD3_epsilon Immunog 96.0 0.024 5.1E-07 28.9 4.0 37 5-54 20-56 (65)
382 PHA03042 CD47-like protein; Pr 95.9 0.068 1.5E-06 35.3 6.7 61 93-160 29-94 (286)
383 PHA03269 envelope glycoprotein 95.7 0.52 1.1E-05 34.1 13.0 137 5-157 361-512 (566)
384 KOG1480|consensus 95.6 0.0047 1E-07 46.2 0.7 73 88-163 137-210 (909)
385 PHA02865 MHC-like TNF binding 95.5 0.15 3.3E-06 35.1 7.4 21 97-117 216-238 (338)
386 PF11465 Receptor_2B4: Natural 95.2 0.062 1.3E-06 30.2 4.1 67 97-163 29-98 (108)
387 PHA03273 envelope glycoprotein 95.2 0.8 1.7E-05 32.9 13.6 99 5-118 269-376 (486)
388 cd05721 IgV_CTLA-4 Immunoglobu 94.8 0.1 2.2E-06 30.0 4.5 33 20-52 61-94 (115)
389 cd04986 IgC_CH2 CH2 domain (se 94.8 0.16 3.4E-06 28.5 5.1 49 4-55 37-89 (99)
390 PHA03282 envelope glycoprotein 94.6 1.2 2.6E-05 32.2 13.6 24 33-56 125-148 (540)
391 PHA03042 CD47-like protein; Pr 94.3 0.22 4.9E-06 33.0 5.6 52 5-65 52-103 (286)
392 cd07689 Ig2_VCAM-1 Second immu 94.2 0.26 5.7E-06 27.5 5.0 47 4-53 33-84 (99)
393 PHA03052 Hypothetical protein; 93.4 0.4 8.7E-06 24.5 4.4 35 88-122 5-42 (69)
394 PHA03271 envelope glycoprotein 93.1 2.3 5E-05 30.4 12.9 101 5-120 279-386 (490)
395 KOG4597|consensus 92.8 0.23 5E-06 35.6 4.1 64 2-67 224-292 (560)
396 PF02480 Herpes_gE: Alphaherpe 92.7 0.14 3.1E-06 36.8 3.1 85 32-116 89-189 (439)
397 PF05790 C2-set: Immunoglobuli 92.6 0.91 2E-05 24.3 5.6 34 33-66 44-78 (80)
398 PHA02982 hypothetical protein; 90.8 3 6.6E-05 26.9 11.5 76 29-120 97-173 (251)
399 PF05790 C2-set: Immunoglobuli 90.1 1.8 3.9E-05 23.2 7.2 25 138-162 45-70 (80)
400 PHA03112 IL-18 binding protein 88.7 2.9 6.2E-05 25.1 5.5 71 93-163 36-123 (141)
401 PHA03286 envelope glycoprotein 88.5 7.7 0.00017 28.2 11.7 84 33-116 128-225 (492)
402 KOG0613|consensus 87.1 2.5 5.4E-05 34.5 5.8 131 33-163 279-420 (1205)
403 PF06328 Lep_receptor_Ig: Ig-l 86.8 3.7 7.9E-05 22.5 7.7 65 89-155 12-81 (89)
404 PF01688 Herpes_gI: Alphaherpe 86.1 5.3 0.00012 24.7 5.8 37 30-66 122-158 (161)
405 cd05890 Ig2_Nectin-1_like Seco 84.9 4.9 0.00011 22.4 4.8 51 1-55 33-87 (98)
406 KOG0613|consensus 84.0 1.7 3.7E-05 35.3 3.7 138 6-152 367-509 (1205)
407 PF11141 DUF2914: Protein of u 83.4 4.5 9.9E-05 20.7 8.1 54 4-66 7-65 (66)
408 PHA02914 Immunoglobulin-like d 82.5 16 0.00034 26.3 9.6 113 31-160 345-468 (500)
409 cd05890 Ig2_Nectin-1_like Seco 82.0 6 0.00013 22.0 4.3 60 98-162 23-90 (98)
410 PHA02865 MHC-like TNF binding 80.7 5 0.00011 28.0 4.6 15 40-54 289-303 (338)
411 KOG0200|consensus 78.7 21 0.00045 27.4 7.7 110 32-157 13-138 (609)
412 PHA03281 envelope glycoprotein 78.0 27 0.00059 26.3 9.6 84 33-116 299-394 (642)
413 PHA03282 envelope glycoprotein 77.0 7.9 0.00017 28.3 4.7 23 31-53 332-354 (540)
414 PHA03292 envelope glycoprotein 76.4 20 0.00044 25.5 6.4 38 29-66 125-162 (413)
415 PF06328 Lep_receptor_Ig: Ig-l 76.4 11 0.00023 20.8 5.1 46 3-52 37-82 (89)
416 PHA03290 envelope glycoprotein 75.8 11 0.00025 26.1 5.1 39 29-67 126-164 (357)
417 PHA03189 UL14 tegument protein 73.5 14 0.00031 25.4 5.0 24 31-55 133-156 (348)
418 PHA03289 envelope glycoprotein 73.2 12 0.00025 25.9 4.6 36 31-66 121-156 (352)
419 PF11049 KSHV_K1: Glycoprotein 71.1 8.7 0.00019 19.7 2.8 35 4-53 11-45 (71)
420 PHA03283 envelope glycoprotein 69.9 16 0.00034 27.3 4.9 26 29-54 312-337 (542)
421 PHA03281 envelope glycoprotein 69.3 12 0.00026 28.0 4.2 26 29-54 472-497 (642)
422 COG5475 Uncharacterized small 68.7 13 0.00028 18.3 4.2 17 148-164 28-44 (60)
423 PF13220 DUF4028: Protein of u 68.1 5.4 0.00012 19.3 1.7 17 145-161 7-23 (65)
424 PHA03286 envelope glycoprotein 66.9 16 0.00034 26.7 4.4 22 33-54 308-329 (492)
425 PHA03291 envelope glycoprotein 66.1 18 0.0004 25.4 4.4 37 31-67 128-164 (401)
426 PF02480 Herpes_gE: Alphaherpe 65.2 17 0.00036 26.7 4.4 23 32-54 269-291 (439)
427 PHA03240 envelope glycoprotein 63.2 16 0.00035 23.7 3.5 27 134-160 103-129 (258)
428 PF02440 Adeno_E3_CR1: Adenovi 56.5 26 0.00057 17.9 4.5 20 93-116 3-22 (63)
429 PF06832 BiPBP_C: Penicillin-B 55.9 32 0.00069 18.6 11.1 56 97-164 31-86 (89)
430 TIGR00864 PCC polycystin catio 53.9 2E+02 0.0043 27.2 11.6 69 40-118 1835-1905(2740)
431 PF00801 PKD: PKD domain; Int 48.0 37 0.00081 17.1 6.1 28 91-118 7-34 (69)
432 PHA02935 Hypothetical protein; 47.4 76 0.0016 20.5 6.0 34 33-66 103-137 (349)
433 PF11327 DUF3129: Protein of u 43.0 57 0.0012 20.8 3.7 38 29-66 90-128 (184)
434 PF05955 Herpes_gp2: Equine he 37.6 1.1E+02 0.0024 19.5 5.0 52 3-54 122-178 (226)
435 TIGR00864 PCC polycystin catio 35.7 4.1E+02 0.0088 25.5 12.6 68 41-118 1666-1735(2740)
436 KOG1026|consensus 27.8 32 0.00069 27.3 1.0 32 90-121 202-233 (774)
437 PF10572 UPF0556: Uncharacteri 27.3 1.5E+02 0.0033 18.4 3.5 16 145-160 69-84 (158)
438 PF15096 G6B: G6B family 26.1 40 0.00086 21.5 1.0 26 40-68 82-107 (224)
439 PF11781 RRN7: RNA polymerase 25.5 38 0.00082 15.0 0.7 10 41-50 20-29 (36)
440 PF05566 Pox_vIL-18BP: Orthopo 24.8 1.5E+02 0.0033 17.1 4.3 30 137-166 94-123 (126)
441 CHL00039 psbF photosystem II p 23.9 32 0.0007 15.2 0.3 9 1-9 7-15 (39)
442 PHA03298 envelope glycoprotein 23.3 62 0.0014 19.2 1.4 14 2-15 94-107 (167)
No 1
>KOG3513|consensus
Probab=99.94 E-value=6.4e-26 Score=165.14 Aligned_cols=150 Identities=29% Similarity=0.517 Sum_probs=122.4
Q ss_pred CCCceEEEEECCEecCCCC--CceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEEeccCCCcccCC
Q psy16859 1 YVKPEVIWLRGNTPLPKSS--PRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEK 78 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~ 78 (168)
.|.|+|.|++|+.++.... .+..+... .|.|.+++.+|+|.|+|.+.|..|...+++.|.|++.
T Consensus 358 ~P~p~v~WlkNg~pl~~~~r~~~~~i~~g-----~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~--------- 423 (1051)
T KOG3513|consen 358 KPNPTVKWLKNGEPLEPAERDPRYKIDDG-----TLIISNVQESDSGVYQCIAENKYGTIYANAELKVLAS--------- 423 (1051)
T ss_pred CCCCceEEeeCCeecCccCCCcceEEeCC-----EEEEEecccccCeEEEeeeecccceEeeeeEEEEEcc---------
Confidence 3899999999999995322 23666655 8999999999999999999999999999999999764
Q ss_pred CCeEEecCC-cceEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEc
Q psy16859 79 PAMFLTRPD-TMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARN 157 (168)
Q Consensus 79 ~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 157 (168)
+|.+...+. ....+..|..+.+.|...+.|.+.+.|.+++..+....++... +.++|.|.+++.+|+|.|+|.|.|
T Consensus 424 ~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~---edGtL~I~n~t~~DaG~YtC~A~N 500 (1051)
T KOG3513|consen 424 APVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRIL---EDGTLEISNVTRSDAGKYTCVAEN 500 (1051)
T ss_pred CCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEEC---CCCcEEecccCcccCcEEEEEEEc
Confidence 344444443 3356778999999999999999999999988855555555433 335899999999999999999999
Q ss_pred CCceeeEEEE
Q psy16859 158 IYGSDRAFVT 167 (168)
Q Consensus 158 ~~g~~~~~~~ 167 (168)
.+|.++....
T Consensus 501 ~~G~a~~~~~ 510 (1051)
T KOG3513|consen 501 KLGKAESTGN 510 (1051)
T ss_pred ccCccceEEE
Confidence 9999886654
No 2
>KOG3513|consensus
Probab=99.93 E-value=8.8e-25 Score=159.30 Aligned_cols=149 Identities=23% Similarity=0.457 Sum_probs=119.1
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEEeccCCCcccCCCC
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPA 80 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~ 80 (168)
+|.|+|.|.|.+... ...|...... +. .|.|.+++.+|+|.|.|.+.|..|.......+.|. .+|
T Consensus 268 ~P~P~i~W~k~~g~~--~~~r~~~~~~-~~--vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~----------a~P 332 (1051)
T KOG3513|consen 268 NPTPQIKWRKVDGKP--PPRRATYSNY-GK--VLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVY----------APP 332 (1051)
T ss_pred CCCCcEEEEeCCCCC--CCcceeeecc-cc--EEEecccCcCCCeEEEEEEecccccceeeEEEEEe----------cCc
Confidence 699999999987642 1224333332 33 89999999999999999999999988888999994 455
Q ss_pred eEEecCCcceEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCc
Q psy16859 81 MFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG 160 (168)
Q Consensus 81 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 160 (168)
.....+ ....+..|+++.+.|.+.|.|.|.++|++++.++....+...... ..+.|.|.+++..|+|.|.|.|.|.+|
T Consensus 333 ~w~~~~-~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i-~~g~L~is~v~~~dsg~YQC~A~Nk~G 410 (1051)
T KOG3513|consen 333 YWLQKP-QDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKI-DDGTLIISNVQESDSGVYQCIAENKYG 410 (1051)
T ss_pred hhhccc-ceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEE-eCCEEEEEecccccCeEEEeeeecccc
Confidence 566666 677888999999999999999999999999999886655221111 124799999999999999999999999
Q ss_pred eeeEEE
Q psy16859 161 SDRAFV 166 (168)
Q Consensus 161 ~~~~~~ 166 (168)
..-+.+
T Consensus 411 ~i~anA 416 (1051)
T KOG3513|consen 411 TIYANA 416 (1051)
T ss_pred eEeeee
Confidence 876544
No 3
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.91 E-value=4.2e-22 Score=126.67 Aligned_cols=142 Identities=20% Similarity=0.261 Sum_probs=100.0
Q ss_pred CceEEEEECCEec--CCCCCce--E-EEec--CCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEEeccCCCcc
Q psy16859 3 KPEVIWLRGNTPL--PKSSPRF--K-YIED--SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVK 75 (168)
Q Consensus 3 ~p~v~W~~~~~~~--~~~~~~~--~-~~~~--~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~ 75 (168)
.++|.|+|++... .....+. . +... .....+|.|.+++.+|+|.|.|.+.|..+.....+.|.|..
T Consensus 62 ~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~------- 134 (227)
T PHA02826 62 SYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDS------- 134 (227)
T ss_pred CccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEec-------
Confidence 3599999988542 1111110 0 0000 01124899999999999999999999887777777777721
Q ss_pred cCCCCeEEecCCcceEeecCCeEEEEEEEcc-----CCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCee
Q psy16859 76 HEKPAMFLTRPDTMMSVALGEDISFSFRLAG-----SPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGT 150 (168)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-----~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~ 150 (168)
++ ....+.+|+.+.|.|.+.+ .|.|.+.|++++..+....++... .....|.|.+++.+|+|.
T Consensus 135 ---~~-------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~--~~~~~L~I~~V~~~DsG~ 202 (227)
T PHA02826 135 ---GT-------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLR--NNNSTLVIKSATHDDSGI 202 (227)
T ss_pred ---CC-------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEe--CCCCEEEECcCCHHhCEE
Confidence 11 1234678999999999763 457899999999988765554433 223479999999999999
Q ss_pred EEEEEEcCCceee
Q psy16859 151 YFIVARNIYGSDR 163 (168)
Q Consensus 151 y~C~~~n~~g~~~ 163 (168)
|+|.+....+...
T Consensus 203 YtC~a~~~~~g~~ 215 (227)
T PHA02826 203 YTCNLRFNKNSNN 215 (227)
T ss_pred EEEEEEEeECCEE
Confidence 9999998754433
No 4
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.88 E-value=1.8e-20 Score=125.90 Aligned_cols=147 Identities=19% Similarity=0.342 Sum_probs=102.0
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeE----EEEEEEEeccCCCccc
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET----FARVDVINVSSGAVKH 76 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~----~~~l~v~~~~~~~~~~ 76 (168)
.|.|+|+|++++. + ...++.... . ..|.|.+++.+|+|.|+|.+.|..+.... .+.|.|..+
T Consensus 153 ~~~~~i~W~k~~~-~--~~~r~~~~~--~--~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~------- 218 (326)
T PHA02785 153 NVNADIIWSGHRR-L--RNKRLKQRT--P--GIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDR------- 218 (326)
T ss_pred CCCceEEEccCCc-c--CCcceEecC--C--CeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEecc-------
Confidence 3788999998643 3 233443322 1 37999999999999999999998765433 234444321
Q ss_pred CCCCeEEecCCcceEeecCCeEEEEEEEccCCCC---eEEEeeCCEeccCCC-----CcEEEec--------CCEEEEEE
Q psy16859 77 EKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKP---KVTWMKGIKDITTSS-----RTMTETV--------NDYVRLTL 140 (168)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~~~W~~~~~~~~~~~-----~~~~~~~--------~~~~~l~i 140 (168)
..||.+ ..| ....+..|+.+.|.|.+.|.|.+ .+.|++++..+...+ +...... .....|.|
T Consensus 219 ~~pp~~-~~p-~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I 296 (326)
T PHA02785 219 IIPPTM-QLP-EGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNI 296 (326)
T ss_pred CCCcee-cCC-CcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEE
Confidence 234443 334 45677789999999999987764 799999998875432 1111110 01357999
Q ss_pred ccCCCCCCeeEEEEEEcCCceee
Q psy16859 141 KRATDDENGTYFIVARNIYGSDR 163 (168)
Q Consensus 141 ~~~~~~d~g~y~C~~~n~~g~~~ 163 (168)
.+++.+|.|.|+|.|.|..|...
T Consensus 297 ~~V~~~D~G~Y~C~A~n~~~~~~ 319 (326)
T PHA02785 297 NPVKEEDATTFTCMAFTIPSISK 319 (326)
T ss_pred CCcchhcCeeeEEEEEeccCceE
Confidence 99999999999999999886554
No 5
>KOG4221|consensus
Probab=99.87 E-value=1.3e-20 Score=138.41 Aligned_cols=154 Identities=27% Similarity=0.468 Sum_probs=114.2
Q ss_pred CCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEccccee-eEEEEEEEEeccCCCcccCCCC
Q psy16859 2 VKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT-ETFARVDVINVSSGAVKHEKPA 80 (168)
Q Consensus 2 p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~ 80 (168)
|.|.+.|.+|..+++.+ .|+....+ + .|.|.++++.|.|.|.|.+.+..... ...+.|+|...+.. ...-
T Consensus 168 ~~p~i~w~kn~~pl~~~-~r~i~lps-G---~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~----~~~~ 238 (1381)
T KOG4221|consen 168 PVPTIMWLKNDQPLPLD-SRVIVLPS-G---ALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGA----LNKL 238 (1381)
T ss_pred cCceeEEecccccccCC-CcEEEcCC-C---cEEecccccCCCceEEEEEecCCcCCccceeEEEecCCccc----ccce
Confidence 67899999999988544 47665544 2 69999999999999999999865433 33677787622110 1112
Q ss_pred eEEecCCcceEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEc--C
Q psy16859 81 MFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARN--I 158 (168)
Q Consensus 81 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n--~ 158 (168)
.|...| ....+..|+++.|.|.+.+.|.|.+.|.+++..+.... .. ........|.|.+++..|+|.|+|.|.| .
T Consensus 239 ~fl~~p-~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds-~r-ivl~g~~slliS~a~~~dSg~YtC~Atn~~D 315 (1381)
T KOG4221|consen 239 VFLDEP-SNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDS-YR-IVLVGGSSLLISNATDDDSGKYTCRATNTND 315 (1381)
T ss_pred eeecCC-CccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecc-eE-EEEecccceEEeccccccCceEEEEecCCCc
Confidence 245556 57778899999999999999999999999999887654 22 2223345799999999999999999999 4
Q ss_pred CceeeEEEE
Q psy16859 159 YGSDRAFVT 167 (168)
Q Consensus 159 ~g~~~~~~~ 167 (168)
.+.+.+.++
T Consensus 316 ~idasaev~ 324 (1381)
T KOG4221|consen 316 SIDASAEVT 324 (1381)
T ss_pred ccccceEEE
Confidence 444445544
No 6
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.86 E-value=3.9e-20 Score=124.32 Aligned_cols=142 Identities=16% Similarity=0.265 Sum_probs=98.3
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEEeccCCCcccCCCC
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPA 80 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~ 80 (168)
||.|+|.|+|++... .+...... + ..|.|.++..+|+|.|+|.+.|..+.....+.|.|.... ++
T Consensus 58 ~p~~~i~W~K~g~~~----~~~~~~~~-g--~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~~--------~~ 122 (326)
T PHA02785 58 YNILDILWEKRGADN----DRIIPIDN-G--SNMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSVS--------ES 122 (326)
T ss_pred CCCceEEEEECCCcc----ceEEEccC-C--ceEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEecC--------CC
Confidence 578999999997532 12211111 2 258899999999999999999998877777888885432 11
Q ss_pred eEEecCCcceEeecCCeEEEEEE-----EccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEE
Q psy16859 81 MFLTRPDTMMSVALGEDISFSFR-----LAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVA 155 (168)
Q Consensus 81 ~~~~~~~~~~~~~~g~~~~l~C~-----~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 155 (168)
.+...+ ....+.+|..+.+.|. ..+.|.+.+.|+++.. +. ..++.. ...+.|.|.+++.+|.|.|+|.+
T Consensus 123 ~~~~~~-~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~-~~r~~~---~~~~~L~i~~v~~~d~G~Y~C~~ 196 (326)
T PHA02785 123 NIDLIS-YPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LR-NKRLKQ---RTPGIITIEDVRKNDAGYYTCVL 196 (326)
T ss_pred ccceee-ccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cC-CcceEe---cCCCeEEEeecChhhCeEEEEEE
Confidence 121112 2344668999999997 2367889999987543 21 122221 12247999999999999999999
Q ss_pred EcCCceee
Q psy16859 156 RNIYGSDR 163 (168)
Q Consensus 156 ~n~~g~~~ 163 (168)
.|..|...
T Consensus 197 ~n~~g~~~ 204 (326)
T PHA02785 197 KYIYGDKT 204 (326)
T ss_pred EeccCCEE
Confidence 99888654
No 7
>KOG4194|consensus
Probab=99.86 E-value=5.3e-21 Score=132.54 Aligned_cols=126 Identities=22% Similarity=0.397 Sum_probs=102.1
Q ss_pred EEEEEEcCCCCCCCeEEEEEEEcccceeeE-EEEEEEEeccCCCcccCCCCeEEecCCcceEeecCCeEEEEEEEccCCC
Q psy16859 31 LHTLILSGVTAEEAGKYTCRVSNEYGYTET-FARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPK 109 (168)
Q Consensus 31 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~ 109 (168)
...|.+.+|+..|+|.|+|++.|..|+..+ .+.++| ...|.+...| ...++..|+.+.|.|.+.|.|.
T Consensus 573 ~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV----------~~~PsFtktP-~dltl~tg~mArl~CaAtG~P~ 641 (873)
T KOG4194|consen 573 TAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTV----------NQAPSFTKTP-EDLTLRTGQMARLECAATGHPR 641 (873)
T ss_pred hheeeeeeeecccCceEEEEEecccCcchhheeEEEe----------eccCccccCc-ccceeecccceeeeeeccCCCC
Confidence 457999999999999999999999998766 678888 4466777777 5889999999999999999999
Q ss_pred CeEEEeeCCEe-ccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEE
Q psy16859 110 PKVTWMKGIKD-ITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVT 167 (168)
Q Consensus 110 ~~~~W~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 167 (168)
|++.|.+++.. ++.....++..--+...+.|.++..+|.|.|+|.|.|.+|+.++..+
T Consensus 642 PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAt 700 (873)
T KOG4194|consen 642 PEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANAT 700 (873)
T ss_pred cceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceE
Confidence 99999987654 54333222222223347899999999999999999999998875443
No 8
>KOG4221|consensus
Probab=99.86 E-value=1.6e-21 Score=143.08 Aligned_cols=147 Identities=31% Similarity=0.469 Sum_probs=120.6
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEEeccCCCcccCCCC
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPA 80 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~ 80 (168)
+|+|.|.|.+|++.|..++.++.+... .+|.|.+++.+|+|.|+|.+.|........+.|+|+. +|
T Consensus 264 ~p~p~v~Wlrng~~i~~ds~rivl~g~----~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a----------~P 329 (1381)
T KOG4221|consen 264 VPKPSVKWLRNGEKISVDSYRIVLVGG----SSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLA----------PP 329 (1381)
T ss_pred CCCCceEEeeCCeeeeecceEEEEecc----cceEEeccccccCceEEEEecCCCcccccceEEEEEc----------CC
Confidence 589999999999998655556655533 3799999999999999999999777888888899953 45
Q ss_pred eEEecCCcceEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCc
Q psy16859 81 MFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG 160 (168)
Q Consensus 81 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 160 (168)
.+...| ......++.++.|.|.+.|.|.+.+.|++++..+...+.+.+.... .+.|..+-..|.|.|.|.+.|..|
T Consensus 330 ~~~~~p-~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~---~lrIlgi~~sdeg~yQcvaen~~G 405 (1381)
T KOG4221|consen 330 GFTKAP-TTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGG---NLRILGIVKSDEGFYQCVAENDAG 405 (1381)
T ss_pred CCCCCC-cceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCC---CcEEEEEecccchhhhhhhccCcc
Confidence 566666 5677788999999999999999999999999888776655544333 288888889999999999999999
Q ss_pred eeeEE
Q psy16859 161 SDRAF 165 (168)
Q Consensus 161 ~~~~~ 165 (168)
.+...
T Consensus 406 ~a~a~ 410 (1381)
T KOG4221|consen 406 SAQAA 410 (1381)
T ss_pred cccch
Confidence 87643
No 9
>KOG4194|consensus
Probab=99.85 E-value=1.5e-20 Score=130.35 Aligned_cols=149 Identities=23% Similarity=0.465 Sum_probs=115.5
Q ss_pred CCceEEEEECCEe-cCC-CCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEEeccCCCcccCCC
Q psy16859 2 VKPEVIWLRGNTP-LPK-SSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKP 79 (168)
Q Consensus 2 p~p~v~W~~~~~~-~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~ 79 (168)
|.|+|.|.|+|.. ++. ...|.....+ +. .+.|.+++.+|+|.|+|.+.|..|....++.|.|...|
T Consensus 640 P~PeIawqkdggtdFPAA~eRRl~Vmpe-dd--~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p--------- 707 (873)
T KOG4194|consen 640 PRPEIAWQKDGGTDFPAARERRLHVMPE-DD--VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETP--------- 707 (873)
T ss_pred CCcceeehhcCCCCCchhhhheeeecCC-CC--EEEEecccccccceeEEeeeccccceeeceEEEEecCC---------
Confidence 8999999998865 432 2334454444 33 68899999999999999999999999999999996432
Q ss_pred CeEEecCCcceEeecCCeEEEEEEEccCCC-CeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcC
Q psy16859 80 AMFLTRPDTMMSVALGEDISFSFRLAGSPK-PKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNI 158 (168)
Q Consensus 80 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 158 (168)
.+.. |.....+..|+++.|.|...+.|. |.+.|+++.+++....+.... .+...|.++....+|+|.|+|...|.
T Consensus 708 -~f~~-PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~--d~dQllvv~~~~~~daG~yTcem~~~ 783 (873)
T KOG4194|consen 708 -SFSI-PLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFP--DGDQLLVVKENLVEDAGIYTCEMSNT 783 (873)
T ss_pred -cccc-cccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCC--CCCeEEEEEehhhhhcceEEEEEEee
Confidence 2333 335678899999999999999886 899999988887665544322 22346888888899999999999999
Q ss_pred CceeeEEE
Q psy16859 159 YGSDRAFV 166 (168)
Q Consensus 159 ~g~~~~~~ 166 (168)
.|.....+
T Consensus 784 ~~~~~~~i 791 (873)
T KOG4194|consen 784 LGTERIHI 791 (873)
T ss_pred ccceeeEE
Confidence 88765443
No 10
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.83 E-value=3e-19 Score=99.87 Aligned_cols=86 Identities=26% Similarity=0.407 Sum_probs=73.9
Q ss_pred EEecCCcceEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCce
Q psy16859 82 FLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGS 161 (168)
Q Consensus 82 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 161 (168)
+...+ ..+.+..|+.+.|.|.+.|.|.+.+.|++++..+....++........+.|.|.++..+|+|.|+|.+.|..|.
T Consensus 3 ~~~~p-~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~ 81 (98)
T cd05762 3 IIQFP-EDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGS 81 (98)
T ss_pred eEECC-cCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCc
Confidence 34445 57889999999999999999999999999999987766666665566678999999999999999999999999
Q ss_pred eeEEEEC
Q psy16859 162 DRAFVTV 168 (168)
Q Consensus 162 ~~~~~~v 168 (168)
..+.++|
T Consensus 82 ~~~~~~l 88 (98)
T cd05762 82 RQAQVNL 88 (98)
T ss_pred eeEEEEE
Confidence 9877654
No 11
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.82 E-value=9.4e-19 Score=97.07 Aligned_cols=89 Identities=30% Similarity=0.521 Sum_probs=76.1
Q ss_pred CCeEEecCCcceEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcC
Q psy16859 79 PAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNI 158 (168)
Q Consensus 79 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 158 (168)
||.+...| ....+..|+.+.|.|.+.|.|.|.+.|++++..+....++........+.|.|.++..+|+|.|.|.+.|.
T Consensus 3 ~~~~~~~p-~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 81 (92)
T cd05747 3 PATILTKP-RSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS 81 (92)
T ss_pred CCcccccC-ccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence 55566666 57889999999999999999999999999998887666666555555678999999999999999999999
Q ss_pred CceeeEEEEC
Q psy16859 159 YGSDRAFVTV 168 (168)
Q Consensus 159 ~g~~~~~~~v 168 (168)
.|.....+.|
T Consensus 82 ~G~~~~~~~l 91 (92)
T cd05747 82 EGKQEAQFTL 91 (92)
T ss_pred CCCEeEEEEe
Confidence 9999988765
No 12
>KOG4222|consensus
Probab=99.81 E-value=1.5e-19 Score=132.31 Aligned_cols=147 Identities=29% Similarity=0.513 Sum_probs=115.4
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeE-EEEEEEEeccCCCcccCCC
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET-FARVDVINVSSGAVKHEKP 79 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~v~~~~~~~~~~~~~ 79 (168)
.|.|.|.|.|+|+++...+......-. ++ .|.|.+++.+|+|.|.|++.|..|...+ .+.|.|+ .+
T Consensus 159 hpeptvSw~Kdg~pl~~~~~~~~~lis-gG--~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~----------e~ 225 (1281)
T KOG4222|consen 159 HPEPTVSWVKDGKPLDHYDVPIIALIS-GG--NLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ----------EK 225 (1281)
T ss_pred CCCCcceeecCCCccccccceeEEEec-CC--cEEEeccccCCCceeeeeecccccccccccceeeec----------cC
Confidence 478999999999998533333332222 33 6999999999999999999999988665 6788884 45
Q ss_pred CeEEecCCcceEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCC
Q psy16859 80 AMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIY 159 (168)
Q Consensus 80 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 159 (168)
|.+...+ ....+..|..+.+.|.+.|.|.|.+.|.+++..++... +.+ ..+..+|.|.+++..|.|.|.|.+.|..
T Consensus 226 P~f~~rp-~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~r-y~i--~~d~qtl~i~r~tp~deg~y~C~a~n~v 301 (1281)
T KOG4222|consen 226 PWFWKRP-KDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSR-YSI--LDDTQTLRIDRVTPTDEGTYVCPAENLV 301 (1281)
T ss_pred Ccccccc-ccceeecccccccccccCCCCCCceeeeccCCCCCccc-eee--eeccccccccccCCCcccceeeeccccc
Confidence 5677667 57888899999999999999999999999776665432 222 2233479999999999999999999999
Q ss_pred ceeeE
Q psy16859 160 GSDRA 164 (168)
Q Consensus 160 g~~~~ 164 (168)
|..++
T Consensus 302 G~l~a 306 (1281)
T KOG4222|consen 302 GGLEA 306 (1281)
T ss_pred ccccc
Confidence 87663
No 13
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.80 E-value=3.4e-18 Score=93.35 Aligned_cols=80 Identities=29% Similarity=0.538 Sum_probs=68.3
Q ss_pred ceEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCC-CCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEE
Q psy16859 89 MMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTS-SRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVT 167 (168)
Q Consensus 89 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 167 (168)
.+.+..|+.+.|.|.+.|.|.|.+.|++++..+... .++..........|.|.++..+|+|.|+|.|.|..|...+.+.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 567889999999999999999999999999988654 3455444445678999999999999999999999999987765
Q ss_pred C
Q psy16859 168 V 168 (168)
Q Consensus 168 v 168 (168)
|
T Consensus 84 l 84 (86)
T cd05894 84 V 84 (86)
T ss_pred E
Confidence 4
No 14
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.80 E-value=4e-18 Score=94.51 Aligned_cols=81 Identities=27% Similarity=0.565 Sum_probs=69.1
Q ss_pred cceEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEec-CCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEE
Q psy16859 88 TMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETV-NDYVRLTLKRATDDENGTYFIVARNIYGSDRAFV 166 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~ 166 (168)
..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+....++..... ....+|.|.++..+|+|.|+|.|.|..|.....+
T Consensus 9 ~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 88 (92)
T cd05737 9 DVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDV 88 (92)
T ss_pred ceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEE
Confidence 467788999999999999999999999999998877666554433 3346899999999999999999999999998777
Q ss_pred EC
Q psy16859 167 TV 168 (168)
Q Consensus 167 ~v 168 (168)
+|
T Consensus 89 ~v 90 (92)
T cd05737 89 TV 90 (92)
T ss_pred EE
Confidence 54
No 15
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.78 E-value=4e-18 Score=90.40 Aligned_cols=66 Identities=30% Similarity=0.512 Sum_probs=55.9
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|.|.|+|++..+.....|+.+..+..+..+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 10 ~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 10 IPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred cCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 599999999999998645567777654345568999999999999999999999999988888765
No 16
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.78 E-value=4.8e-18 Score=93.28 Aligned_cols=83 Identities=19% Similarity=0.294 Sum_probs=66.6
Q ss_pred CeEEecCCcceEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCC
Q psy16859 80 AMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIY 159 (168)
Q Consensus 80 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 159 (168)
|.+...+ ....+..|+.+.|.|.+.|.|.|.+.|++++..+....+. .. ....|.|.++..+|+|.|+|.|.|..
T Consensus 2 p~i~~~~-~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~A~N~~ 76 (88)
T cd05851 2 ADINVKF-KDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEI--SM--SGAVLKIFNIQPEDEGTYECEAENIK 76 (88)
T ss_pred CceEEcc-ccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEE--ec--CCCEEEECcCChhhCEEEEEEEEcCC
Confidence 4455555 4677889999999999999999999999988766543221 11 22479999999999999999999999
Q ss_pred ceeeEEEE
Q psy16859 160 GSDRAFVT 167 (168)
Q Consensus 160 g~~~~~~~ 167 (168)
|.....+.
T Consensus 77 G~~~~~~~ 84 (88)
T cd05851 77 GKDKHQAR 84 (88)
T ss_pred CceEEEEE
Confidence 99886654
No 17
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.78 E-value=1.4e-17 Score=92.15 Aligned_cols=87 Identities=33% Similarity=0.546 Sum_probs=76.9
Q ss_pred eEEecCCcceEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCc
Q psy16859 81 MFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG 160 (168)
Q Consensus 81 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 160 (168)
.+...+ ..+.+..|+.+.|.|.+.+.|.+.+.|++++..+....+..........+|.|.++..+|.|.|+|.+.|..|
T Consensus 2 ~~~~~~-~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g 80 (90)
T PF07679_consen 2 VFTKKP-KDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG 80 (90)
T ss_dssp EEEEES-SEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred EEEEec-CCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence 344455 6788999999999999999999999999999999988888877777888999999999999999999999999
Q ss_pred eeeEEEEC
Q psy16859 161 SDRAFVTV 168 (168)
Q Consensus 161 ~~~~~~~v 168 (168)
.....+.|
T Consensus 81 ~~~~~~~l 88 (90)
T PF07679_consen 81 EATASVNL 88 (90)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 99877654
No 18
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.78 E-value=1.8e-17 Score=91.54 Aligned_cols=81 Identities=26% Similarity=0.283 Sum_probs=66.5
Q ss_pred cceEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEE
Q psy16859 88 TMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVT 167 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 167 (168)
..+.+..|+.+.|.|.+.|.|.|.+.|++++..+................|.|.++..+|.|.|+|.|.|..|...+.++
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~ 87 (90)
T cd04972 8 NATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQ 87 (90)
T ss_pred cCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEE
Confidence 45668899999999999999999999999998776543322233344568999999999999999999999999887665
Q ss_pred C
Q psy16859 168 V 168 (168)
Q Consensus 168 v 168 (168)
|
T Consensus 88 L 88 (90)
T cd04972 88 V 88 (90)
T ss_pred E
Confidence 3
No 19
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.77 E-value=1.4e-17 Score=93.35 Aligned_cols=81 Identities=25% Similarity=0.416 Sum_probs=66.3
Q ss_pred cceEeecCCeEEEEEEEcc-CCCCeEEEeeCCEeccCCCCcEEEecC-----CEEEEEEccCCCCCCeeEEEEEEcCCce
Q psy16859 88 TMMSVALGEDISFSFRLAG-SPKPKVTWMKGIKDITTSSRTMTETVN-----DYVRLTLKRATDDENGTYFIVARNIYGS 161 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 161 (168)
..+.+..|+.+.|.|.+.| .|+|.+.|++++..+............ ....|.|.++..+|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 4677889999999999999 899999999999988754443322221 1368999999999999999999999999
Q ss_pred eeEEEEC
Q psy16859 162 DRAFVTV 168 (168)
Q Consensus 162 ~~~~~~v 168 (168)
.+..+.|
T Consensus 91 ~~~t~~L 97 (101)
T cd04975 91 KSLTFEL 97 (101)
T ss_pred EEEEEEE
Confidence 8877653
No 20
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.76 E-value=3.2e-17 Score=87.32 Aligned_cols=72 Identities=29% Similarity=0.502 Sum_probs=62.0
Q ss_pred eEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEEC
Q psy16859 97 DISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168 (168)
Q Consensus 97 ~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~v 168 (168)
.+.|.|.+.|.|.|.+.|++++..+....+...........|.|.++..+|+|.|+|.|.|..|..+..++|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINV 72 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEE
Confidence 368999999999999999999998866666555555556789999999999999999999999999877754
No 21
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.76 E-value=1.2e-17 Score=88.88 Aligned_cols=72 Identities=26% Similarity=0.480 Sum_probs=60.0
Q ss_pred cCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEEC
Q psy16859 94 LGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168 (168)
Q Consensus 94 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~v 168 (168)
+|+.+.|.|.+.|.|.|.+.|++++..+....+.... ...+|.|.++..+|.|.|+|.|.|..|..+..+.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L 72 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVL---SSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQL 72 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEc---cCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEE
Confidence 5889999999999999999999999887654443322 22479999999999999999999999998876653
No 22
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.75 E-value=2.3e-17 Score=87.24 Aligned_cols=70 Identities=24% Similarity=0.348 Sum_probs=58.7
Q ss_pred CCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEE
Q psy16859 95 GEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVT 167 (168)
Q Consensus 95 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 167 (168)
|+.+.|.|.+.|.|.|.+.|++++..+....++.... .++|.|.+++.+|.|.|+|.|.|..|.......
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~---~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 70 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWD---DGSLEILNITKLDEGSYTCFAENNRGKANSTGV 70 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcC---CCEEEECcCChhHCEEEEEEEECCCCceeEEEE
Confidence 6789999999999999999999998776555544322 247999999999999999999999999886654
No 23
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.75 E-value=5.8e-17 Score=90.50 Aligned_cols=79 Identities=20% Similarity=0.343 Sum_probs=63.8
Q ss_pred ceEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEEC
Q psy16859 89 MMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168 (168)
Q Consensus 89 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~v 168 (168)
...+..|+.+.|.|.+.|.|.|.+.|++++..+..... ..........|.|.++..+|.|.|+|.|.|..|.....+.|
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L 90 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEE-KYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHL 90 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCC-EEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEE
Confidence 45688999999999999999999999999988765421 11222233479999999999999999999999998876653
No 24
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.75 E-value=3.9e-17 Score=86.64 Aligned_cols=70 Identities=20% Similarity=0.339 Sum_probs=57.0
Q ss_pred EEEEEEEccCCCCeEEEeeCCEeccCC-CCcEEEecC-CEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEE
Q psy16859 98 ISFSFRLAGSPKPKVTWMKGIKDITTS-SRTMTETVN-DYVRLTLKRATDDENGTYFIVARNIYGSDRAFVT 167 (168)
Q Consensus 98 ~~l~C~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 167 (168)
+.|.|.+.|.|.|.+.|++++..+... .++...... ...+|.|.++..+|+|.|+|.|.|..|.......
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~ 72 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHAR 72 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEE
Confidence 478999999999999999999988643 444443332 2347999999999999999999999999986654
No 25
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.74 E-value=4.5e-17 Score=86.48 Aligned_cols=66 Identities=32% Similarity=0.544 Sum_probs=55.2
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
.|.|.|.|+|++..+.....++.+.....+..+|.|.+++.+|+|.|+|.+.|..|....++.|.|
T Consensus 10 ~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 10 VPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred ecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 599999999999998655567776554234457999999999999999999999999988888765
No 26
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.74 E-value=8e-17 Score=85.74 Aligned_cols=66 Identities=29% Similarity=0.467 Sum_probs=55.1
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|.|.|+|++..+.....++.+.....+..+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 10 ~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 10 IPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred cCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 599999999999998644557766554345568999999999999999999999999888887764
No 27
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.74 E-value=1.5e-16 Score=88.09 Aligned_cols=81 Identities=30% Similarity=0.564 Sum_probs=67.8
Q ss_pred cceEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEec-CCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEE
Q psy16859 88 TMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETV-NDYVRLTLKRATDDENGTYFIVARNIYGSDRAFV 166 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~ 166 (168)
..+.+.+|+.+.|.|.+.+.|.|.+.|++++..+....++..... ....+|.|..++.+|+|.|+|.|.|.+|...+.+
T Consensus 9 ~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 88 (92)
T cd05891 9 DVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDV 88 (92)
T ss_pred CcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEE
Confidence 467889999999999999999999999999988776555443332 2345799999999999999999999999999877
Q ss_pred EC
Q psy16859 167 TV 168 (168)
Q Consensus 167 ~v 168 (168)
.|
T Consensus 89 ~v 90 (92)
T cd05891 89 TV 90 (92)
T ss_pred EE
Confidence 64
No 28
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.74 E-value=5.5e-17 Score=91.02 Aligned_cols=80 Identities=20% Similarity=0.346 Sum_probs=64.8
Q ss_pred ceEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEec------CCEEEEEEccCCCCCCeeEEEEEEcCCcee
Q psy16859 89 MMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETV------NDYVRLTLKRATDDENGTYFIVARNIYGSD 162 (168)
Q Consensus 89 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 162 (168)
...+..|+.+.|.|.+.|.|.|.+.|++++.++........... ...++|.|.++..+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 56678899999999999999999999999999875543222111 112579999999999999999999999998
Q ss_pred eEEEEC
Q psy16859 163 RAFVTV 168 (168)
Q Consensus 163 ~~~~~v 168 (168)
+.++.|
T Consensus 92 ~~t~~l 97 (101)
T cd05859 92 SYTFAL 97 (101)
T ss_pred EEEEEE
Confidence 876653
No 29
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.74 E-value=7.4e-17 Score=88.76 Aligned_cols=82 Identities=21% Similarity=0.304 Sum_probs=64.4
Q ss_pred eEEecCCcceEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCc
Q psy16859 81 MFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG 160 (168)
Q Consensus 81 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 160 (168)
.+...| ....+.+|+.+.|.|.+.|.|.|.+.|++++..+....... .....|.|.+++.+|+|.|+|.+.|..|
T Consensus 3 ~~~~~p-~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G 77 (88)
T cd04968 3 IIVVFP-KDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS----MSGAVLKIPNIQFEDEGTYECEAENIKG 77 (88)
T ss_pred cEEECC-CceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE----EeCCEEEECCCCcccCEEEEEEEEECCC
Confidence 344445 56778899999999999999999999999776554332221 2235899999999999999999999999
Q ss_pred eeeEEEE
Q psy16859 161 SDRAFVT 167 (168)
Q Consensus 161 ~~~~~~~ 167 (168)
.......
T Consensus 78 ~~~~~~~ 84 (88)
T cd04968 78 KDTHQGR 84 (88)
T ss_pred cEEEEEE
Confidence 8876554
No 30
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.73 E-value=1e-16 Score=86.17 Aligned_cols=71 Identities=24% Similarity=0.438 Sum_probs=60.5
Q ss_pred CCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEE
Q psy16859 95 GEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAF 165 (168)
Q Consensus 95 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~ 165 (168)
|+.+.|.|.+.|.|.|.+.|++++..+....++..........|.|.++..+|+|.|+|.|.|..|.....
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 71 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGI 71 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEec
Confidence 67899999999999999999999887766555555555556789999999999999999999999987643
No 31
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.73 E-value=2.2e-16 Score=86.37 Aligned_cols=79 Identities=24% Similarity=0.406 Sum_probs=64.0
Q ss_pred eEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcE-EEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEEC
Q psy16859 90 MSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTM-TETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168 (168)
Q Consensus 90 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~v 168 (168)
+.+..|..+.|.|.+.|.|.|.+.|++++..+....+.. .........|.|..+..+|+|.|+|.+.|..|.....++|
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 457789999999999999999999999998886544321 1122234579999999999999999999999999877654
No 32
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.73 E-value=1.4e-16 Score=85.79 Aligned_cols=70 Identities=30% Similarity=0.464 Sum_probs=57.1
Q ss_pred EEEEEEccCCCCeEEEeeCCEeccCCCCcEEEec-------CCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEEC
Q psy16859 99 SFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETV-------NDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168 (168)
Q Consensus 99 ~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~v 168 (168)
.+.|.+.|.|.|.+.|++++..+........... ...+.|.|.++...|+|.|+|.|.|..|..+..++|
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~ 78 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISA 78 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEe
Confidence 4689999999999999999998876654322111 224579999999999999999999999999988765
No 33
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.72 E-value=2.8e-16 Score=87.32 Aligned_cols=80 Identities=26% Similarity=0.360 Sum_probs=61.6
Q ss_pred ceEeecCCeEEEEEEEccCCC-CeEEEee-CCEeccC-CCCcEEEec-CCEEEEEEccCCCCCCeeEEEEEEcCC-ceee
Q psy16859 89 MMSVALGEDISFSFRLAGSPK-PKVTWMK-GIKDITT-SSRTMTETV-NDYVRLTLKRATDDENGTYFIVARNIY-GSDR 163 (168)
Q Consensus 89 ~~~~~~g~~~~l~C~~~~~p~-~~~~W~~-~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~-g~~~ 163 (168)
...+..|+.+.|.|.+.|.|. |.+.|++ ++..+.. ..++..... ...++|.|.+++.+|+|.|+|.|.|.. |...
T Consensus 9 ~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~ 88 (96)
T cd05865 9 QGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESE 88 (96)
T ss_pred ccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEE
Confidence 456889999999999999985 7999997 6765544 333333222 224689999999999999999999997 8777
Q ss_pred EEEEC
Q psy16859 164 AFVTV 168 (168)
Q Consensus 164 ~~~~v 168 (168)
+.+.|
T Consensus 89 ~s~~l 93 (96)
T cd05865 89 ATVNV 93 (96)
T ss_pred EEEEE
Confidence 76643
No 34
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.72 E-value=4.6e-16 Score=87.08 Aligned_cols=86 Identities=22% Similarity=0.393 Sum_probs=63.7
Q ss_pred eEEecCCcceEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCC-----CcEEEecCCEEEEEEccCCCCCCeeEEEEE
Q psy16859 81 MFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSS-----RTMTETVNDYVRLTLKRATDDENGTYFIVA 155 (168)
Q Consensus 81 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~-----~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 155 (168)
.+...+. ......|+.+.|.|.+.|.|.|.+.|++++..+.... +.........+.|.|.++..+|.|.|+|.|
T Consensus 4 ~i~~~~~-~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A 82 (97)
T cd05869 4 KITYVEN-QTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTA 82 (97)
T ss_pred eEEEccC-ceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEE
Confidence 3444442 3344558999999999999999999999887654321 122222233468999999999999999999
Q ss_pred EcCCceeeEEEE
Q psy16859 156 RNIYGSDRAFVT 167 (168)
Q Consensus 156 ~n~~g~~~~~~~ 167 (168)
.|..|.....+.
T Consensus 83 ~N~~G~~~~~~~ 94 (97)
T cd05869 83 SNTIGQDSQSMY 94 (97)
T ss_pred ecCCCCeeEEEE
Confidence 999999886654
No 35
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.72 E-value=1.8e-16 Score=83.58 Aligned_cols=69 Identities=23% Similarity=0.359 Sum_probs=56.5
Q ss_pred eEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEEC
Q psy16859 97 DISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168 (168)
Q Consensus 97 ~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~v 168 (168)
++.|.|.+.|.|.|.+.|++++..+....++..... ..|.|.++..+|+|.|+|.|.|..|...+.+.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~---~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L 69 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKE---HNLQVLGLVKSDEGFYQCIAENDVGNVQASAQL 69 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEec---CCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEE
Confidence 478999999999999999999988766555443322 257788999999999999999999999877653
No 36
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.72 E-value=1.2e-16 Score=84.81 Aligned_cols=70 Identities=26% Similarity=0.478 Sum_probs=56.3
Q ss_pred EEEEEEEccCCCCeEEEeeCCEeccCC-CCcEEEecC-CEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEE
Q psy16859 98 ISFSFRLAGSPKPKVTWMKGIKDITTS-SRTMTETVN-DYVRLTLKRATDDENGTYFIVARNIYGSDRAFVT 167 (168)
Q Consensus 98 ~~l~C~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 167 (168)
+.|.|.+.|.|.|.+.|++++..+... .++...... ....|.|.++..+|+|.|+|.|.|..|+.+....
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~ 72 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTAR 72 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEE
Confidence 478999999999999999999887643 334333222 2347999999999999999999999999986654
No 37
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.72 E-value=1.9e-16 Score=84.39 Aligned_cols=70 Identities=30% Similarity=0.471 Sum_probs=56.9
Q ss_pred EEEEEEccCCCCeEEEeeCCEeccCCCCcEEE--e---cCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEEC
Q psy16859 99 SFSFRLAGSPKPKVTWMKGIKDITTSSRTMTE--T---VNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168 (168)
Q Consensus 99 ~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~--~---~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~v 168 (168)
.+.|.+.|.|.|.+.|++++..+......... . ....+.|.|.++..+|+|.|+|.|.|..|.+...+.+
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~ 76 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSA 76 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEe
Confidence 36799999999999999999999766543221 1 1224689999999999999999999999999888764
No 38
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.72 E-value=3.8e-16 Score=86.00 Aligned_cols=79 Identities=24% Similarity=0.394 Sum_probs=63.9
Q ss_pred cceEeecCCeEEEEEEEccCCCCeEEEee-CCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCcee-eEE
Q psy16859 88 TMMSVALGEDISFSFRLAGSPKPKVTWMK-GIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSD-RAF 165 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-~~~ 165 (168)
..+.+..|+.+.|.|.+.|.|. .+.|++ ++..+....++..........|.|..+..+|+|.|+|.|.|..|.. ...
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 86 (92)
T cd05866 8 SKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEAT 86 (92)
T ss_pred cceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEE
Confidence 4567889999999999999897 999997 5666665556655545555689999999999999999999999986 344
Q ss_pred EE
Q psy16859 166 VT 167 (168)
Q Consensus 166 ~~ 167 (168)
+.
T Consensus 87 i~ 88 (92)
T cd05866 87 VV 88 (92)
T ss_pred EE
Confidence 43
No 39
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.71 E-value=6.5e-17 Score=83.60 Aligned_cols=61 Identities=25% Similarity=0.388 Sum_probs=51.4
Q ss_pred EEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEE
Q psy16859 98 ISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFV 166 (168)
Q Consensus 98 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~ 166 (168)
+.|.|.+.|.|.|.+.|++++..+... .....|.|.++..+|+|.|+|.|.|..|..+..+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~ 61 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRI 61 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEE
Confidence 468999999999999999999988632 1234899999999999999999999999665443
No 40
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.71 E-value=6.4e-16 Score=92.12 Aligned_cols=117 Identities=21% Similarity=0.325 Sum_probs=79.8
Q ss_pred EEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEEeccCCCcccCCCCeEEecCCcceEeecCCeEEEEEEEccC-CC-C
Q psy16859 33 TLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGS-PK-P 110 (168)
Q Consensus 33 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~ 110 (168)
+|+|.+++.+|+|.|.|.+.+..+.....+.|.|.. +|.+...+. ......|..+.|.|.+.|. |. +
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~----------~P~v~~~~~-~~~~~~~~~~~L~C~a~g~~P~~~ 70 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE----------PPRVRLSLE-KLVSMIEEPQTLICHIAGYYPLDV 70 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec----------CCceEEeCC-CceeecCCcEEEEEEECCCCCCCe
Confidence 699999999999999999998877777788888853 444444442 3334478889999999985 54 4
Q ss_pred eEEEeeCCEeccC----CCCcE----EEec-CC---EEEEEEccCCCCCCeeEEEEEEcCCc
Q psy16859 111 KVTWMKGIKDITT----SSRTM----TETV-ND---YVRLTLKRATDDENGTYFIVARNIYG 160 (168)
Q Consensus 111 ~~~W~~~~~~~~~----~~~~~----~~~~-~~---~~~l~i~~~~~~d~g~y~C~~~n~~g 160 (168)
.+.|++++..... ..... .... +. .+.|.+....+.+...|+|.+.+..-
T Consensus 71 ~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 71 QVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred EEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence 7999998754221 01111 0111 11 14567766666667799999988644
No 41
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.71 E-value=6.2e-16 Score=86.73 Aligned_cols=80 Identities=16% Similarity=0.257 Sum_probs=61.8
Q ss_pred cceEeecCCeEEEEEEEccCCCCeEEEeeC--CEeccC-----CCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCc
Q psy16859 88 TMMSVALGEDISFSFRLAGSPKPKVTWMKG--IKDITT-----SSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG 160 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 160 (168)
..+.+.+|+.++|.|.+.|.|.|.+.|++. +..+.. ..++.........+|.|.+++.+|+|.|+|.|.|..|
T Consensus 9 ~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 88 (98)
T cd05870 9 KNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIG 88 (98)
T ss_pred ccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCC
Confidence 467888999999999999999999999984 333321 1233332222346899999999999999999999999
Q ss_pred eeeEEEE
Q psy16859 161 SDRAFVT 167 (168)
Q Consensus 161 ~~~~~~~ 167 (168)
.....+.
T Consensus 89 ~~~~~~~ 95 (98)
T cd05870 89 GHQKSMY 95 (98)
T ss_pred cceeEEE
Confidence 8876654
No 42
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.71 E-value=3.5e-16 Score=83.28 Aligned_cols=71 Identities=20% Similarity=0.306 Sum_probs=57.2
Q ss_pred EEEEEEEccCCCCeEEEeeCCEeccCC-CCcEEEec-CCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEEC
Q psy16859 98 ISFSFRLAGSPKPKVTWMKGIKDITTS-SRTMTETV-NDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168 (168)
Q Consensus 98 ~~l~C~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~v 168 (168)
+.|.|.+.|.|.|.+.|++++..+... .++..... ....+|.|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 73 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARL 73 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEE
Confidence 478999999999999999999888743 34443322 233479999999999999999999999998876643
No 43
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.71 E-value=2.8e-16 Score=85.80 Aligned_cols=77 Identities=19% Similarity=0.377 Sum_probs=64.7
Q ss_pred cceEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEE
Q psy16859 88 TMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVT 167 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 167 (168)
....+..|+.+.|.|.+.|.|.|.+.|++++..+....+... . ...|.|.++..+|+|.|+|.|.|..|...+.+.
T Consensus 7 ~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~--~--~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05728 7 SDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV--E--AGDLRITKLSLSDSGMYQCVAENKHGTIYASAE 82 (85)
T ss_pred CccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE--e--CCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEE
Confidence 467788999999999999999999999999998765444332 2 237999999999999999999999999887665
Q ss_pred C
Q psy16859 168 V 168 (168)
Q Consensus 168 v 168 (168)
|
T Consensus 83 l 83 (85)
T cd05728 83 L 83 (85)
T ss_pred E
Confidence 3
No 44
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.71 E-value=2.7e-16 Score=83.99 Aligned_cols=72 Identities=25% Similarity=0.375 Sum_probs=56.9
Q ss_pred CCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEE
Q psy16859 95 GEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVT 167 (168)
Q Consensus 95 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 167 (168)
|+.+.|.|.+.|.|.|.+.|++++..+........... +...|.|.+++..|.|.|.|.|.|..|...+.+.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~-~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 72 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKV-DGDTIIFSKVQERSSAVYQCNASNEYGYLLANAF 72 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEe-cCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEE
Confidence 67899999999999999999999988754322111111 1236889999999999999999999999886654
No 45
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.71 E-value=3.9e-16 Score=83.45 Aligned_cols=71 Identities=23% Similarity=0.297 Sum_probs=57.5
Q ss_pred CCeEEEEEEEccCCCCeEEEeeCCEeccCCCCc-EEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEE
Q psy16859 95 GEDISFSFRLAGSPKPKVTWMKGIKDITTSSRT-MTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVT 167 (168)
Q Consensus 95 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 167 (168)
|+.+.|.|.+.|.|.|.+.|++++..+...... .... ....|.|.+++.+|+|.|.|.|.|..|...+.+.
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 72 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV--SSGALILTDVQPSDTAVYQCEARNRHGNLLANAH 72 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe--eCCEEEECCCChhhCEEEEEEEECCCCeEEEEEE
Confidence 678999999999999999999999887654321 1111 2247999999999999999999999999876654
No 46
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.71 E-value=1.4e-16 Score=83.52 Aligned_cols=68 Identities=24% Similarity=0.374 Sum_probs=56.9
Q ss_pred EEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEEC
Q psy16859 98 ISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168 (168)
Q Consensus 98 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~v 168 (168)
+.|.|.+.|.|.|.+.|++++..+....++... ..+.|.|.++..+|.|.|+|.|.|..|..+..+.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHIS---PEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEEC---CCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 478999999999999999999887665544332 22479999999999999999999999999887764
No 47
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.70 E-value=3e-16 Score=83.27 Aligned_cols=71 Identities=27% Similarity=0.467 Sum_probs=59.4
Q ss_pred CCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEEC
Q psy16859 95 GEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168 (168)
Q Consensus 95 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~v 168 (168)
|+.+.|.|.+.|.|.|.+.|++++..+....+.... ...+|.|.++..+|+|.|+|.+.|..|.....+.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 71 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIW---PDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSL 71 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEEC---CCCeEEEccCChhHCEEEEEEEECCCCceEEEEEE
Confidence 678999999999999999999999887665554432 22479999999999999999999999999876653
No 48
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.70 E-value=5.5e-16 Score=84.64 Aligned_cols=65 Identities=26% Similarity=0.466 Sum_probs=54.8
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|+|++.|+++++++.....++.+... .....|.|.++..+|+|.|+|.+.|..|....++.|.|
T Consensus 22 ~P~P~v~W~k~~~~i~~~~~r~~~~~~-~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V 86 (86)
T cd05894 22 EPAPTVTWSRGDKAFTETEGRVRVESY-KDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV 86 (86)
T ss_pred cCCCeEEEEECCEECccCCCeEEEEEc-CCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEEC
Confidence 599999999999998644457776655 55678999999999999999999999999887777654
No 49
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.70 E-value=3.3e-16 Score=83.89 Aligned_cols=72 Identities=22% Similarity=0.220 Sum_probs=58.4
Q ss_pred CCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEE
Q psy16859 95 GEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVT 167 (168)
Q Consensus 95 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 167 (168)
|+.+.|.|.+.|.|.|.+.|++++..+....... ........|.|.+++.+|+|.|+|.|.|..|...+.+.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 72 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDP-RRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAF 72 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcc-eEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEE
Confidence 6789999999999999999999998876544321 11222357999999999999999999999999886654
No 50
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.70 E-value=5.9e-16 Score=86.56 Aligned_cols=68 Identities=18% Similarity=0.279 Sum_probs=58.5
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEEecc
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVS 70 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~ 70 (168)
.|+|++.|+|+++.|. ...++.+... ...+.|+|.++..+|+|.|+|.+.|..|....++.|.|.+++
T Consensus 27 ~p~p~v~W~kdg~~l~-~~~~~~~~~~-~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P 94 (98)
T cd05762 27 TQPITCTWMKFRKQIQ-EGEGIKIENT-ENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKP 94 (98)
T ss_pred cCCCceEEEECCEEec-CCCcEEEEec-CCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCC
Confidence 4889999999999994 4457776655 556789999999999999999999999999999999997654
No 51
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.69 E-value=7.1e-16 Score=82.07 Aligned_cols=64 Identities=27% Similarity=0.431 Sum_probs=54.0
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|++.|++++..+ ....++.+... .....|.|.++..+|+|.|+|.+.|..|....++.|.|
T Consensus 11 ~P~p~v~W~k~g~~l-~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 11 RPTPTVTWSKDGKPL-KLSGRVQIETT-ASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred eCCCeEEEEECCEEc-CCCCeEEEEEC-CCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 599999999999998 34557766655 55678999999999999999999999999887777654
No 52
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.69 E-value=1e-15 Score=85.68 Aligned_cols=80 Identities=23% Similarity=0.355 Sum_probs=63.1
Q ss_pred cceEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCC-----CcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCcee
Q psy16859 88 TMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSS-----RTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSD 162 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~-----~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 162 (168)
....+.+|+.+.|.|.+.|.|.|.+.|++++..+.... ++........+.|.|.+++.+|.|.|+|.|.|..|..
T Consensus 9 ~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 88 (96)
T cd05732 9 ENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGD 88 (96)
T ss_pred CceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCc
Confidence 35678899999999999999999999999886554321 2222222334689999999999999999999999998
Q ss_pred eEEEE
Q psy16859 163 RAFVT 167 (168)
Q Consensus 163 ~~~~~ 167 (168)
...+.
T Consensus 89 ~~s~~ 93 (96)
T cd05732 89 QQSMY 93 (96)
T ss_pred EEEEE
Confidence 86664
No 53
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.69 E-value=1.2e-15 Score=83.67 Aligned_cols=73 Identities=25% Similarity=0.352 Sum_probs=58.7
Q ss_pred CCeEEEEEEEccCCCCeEEEeeCCEeccCCC-CcEEEe--cC--CEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEE
Q psy16859 95 GEDISFSFRLAGSPKPKVTWMKGIKDITTSS-RTMTET--VN--DYVRLTLKRATDDENGTYFIVARNIYGSDRAFVT 167 (168)
Q Consensus 95 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~--~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 167 (168)
|+.+.|.|.+.|.|.+.+.|++++..+.... ++.... .. ..+.|.|.++..+|.|.|+|.|.|..|...+.+.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~ 78 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQ 78 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEE
Confidence 6889999999999999999999998775432 333322 11 1267999999999999999999999999886654
No 54
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.68 E-value=8e-16 Score=81.95 Aligned_cols=64 Identities=27% Similarity=0.329 Sum_probs=49.3
Q ss_pred CCCceEEEEECCEecCCCCCceEE----EecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKY----IEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVD 65 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 65 (168)
+|.|+|+|||||++|.. +.++.. .........|.|.++..+|+|.|+|.+.|..|....++.+.
T Consensus 10 ~P~Pti~W~kng~~l~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 10 NPKPTLQWFHEGAILNE-SEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eCCCceEEEECCEECCC-CcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 59999999999999953 333321 11113356899999999999999999999999887766654
No 55
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.67 E-value=1.5e-15 Score=81.13 Aligned_cols=71 Identities=20% Similarity=0.386 Sum_probs=57.8
Q ss_pred EEEEEEEcc-CCCCeEEEeeCCEeccCCCCcE---EEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEEC
Q psy16859 98 ISFSFRLAG-SPKPKVTWMKGIKDITTSSRTM---TETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168 (168)
Q Consensus 98 ~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~v 168 (168)
+.|.|.+.| .|.|.+.|++++..+....... .........|.|.++..+|.|.|+|.|.|..|.....++|
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~~ 75 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTANV 75 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEeC
Confidence 368999999 9999999999998876544322 2222345689999999999999999999999999988765
No 56
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.67 E-value=4.5e-15 Score=82.45 Aligned_cols=68 Identities=21% Similarity=0.343 Sum_probs=54.2
Q ss_pred cCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCC-CCCCeeEEEEEEcCCceee
Q psy16859 94 LGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRAT-DDENGTYFIVARNIYGSDR 163 (168)
Q Consensus 94 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~ 163 (168)
.|+.+.|.|.+.|.|.|.+.|++++..+............ +.|.|.++. .+|.|.|.|.|.|..|...
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~--g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~ 86 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLID--GNLIISNPSEVKDSGRYQCLATNSIGSIL 86 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeC--CeEEEccCCccCcCEEEEEEEEcCCCeEE
Confidence 4789999999999999999999999888654333322222 368888874 6899999999999999874
No 57
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.67 E-value=5.3e-15 Score=82.93 Aligned_cols=81 Identities=20% Similarity=0.365 Sum_probs=64.3
Q ss_pred cceEeecCCeEEEEEEEccCCCC-eEEEeeCCEeccCC--CCcEEEec----CCEEEEEEccCCCCC-CeeEEEEEEcCC
Q psy16859 88 TMMSVALGEDISFSFRLAGSPKP-KVTWMKGIKDITTS--SRTMTETV----NDYVRLTLKRATDDE-NGTYFIVARNIY 159 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~~--~~~~~~~~----~~~~~l~i~~~~~~d-~g~y~C~~~n~~ 159 (168)
....+..|+.+.|.|.+.|.|.| .+.|.+++..+... .++..... ...++|.|.++..+| .|.|.|.|.|..
T Consensus 9 ~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~ 88 (98)
T cd05758 9 ATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSF 88 (98)
T ss_pred CcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCC
Confidence 35668899999999999999998 59999999877653 34433322 123589999999844 899999999999
Q ss_pred ceeeEEEEC
Q psy16859 160 GSDRAFVTV 168 (168)
Q Consensus 160 g~~~~~~~v 168 (168)
|.+...+.|
T Consensus 89 G~~~~~~~L 97 (98)
T cd05758 89 GSGTAIISL 97 (98)
T ss_pred CcccEEEEe
Confidence 999888765
No 58
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.67 E-value=1.7e-15 Score=79.18 Aligned_cols=68 Identities=28% Similarity=0.386 Sum_probs=54.2
Q ss_pred CCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEEC
Q psy16859 95 GEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168 (168)
Q Consensus 95 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~v 168 (168)
|+.+.|.|.+.|.|.|.+.|++++..+....+.. .....|.|.++ .|+|.|+|.|.|..|...+.+.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~----~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMP----VGRNVLELTNI--YESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCcccee----cCccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence 6789999999999999999999998775543321 12236888876 47999999999999998877654
No 59
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.67 E-value=3.6e-15 Score=84.04 Aligned_cols=82 Identities=21% Similarity=0.422 Sum_probs=58.9
Q ss_pred CeEEecCCcceEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCC----CCcEEE-ecCCEEEEEE--ccCCCCCCeeEE
Q psy16859 80 AMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTS----SRTMTE-TVNDYVRLTL--KRATDDENGTYF 152 (168)
Q Consensus 80 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~----~~~~~~-~~~~~~~l~i--~~~~~~d~g~y~ 152 (168)
|.+...| ..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+... ...... .......+.+ ..+..+|+|.|+
T Consensus 2 P~i~~~p-~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 2 PRIVEHP-SDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CeEEecC-ceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 4555556 5778889999999999999999999999999887652 111111 1122222333 234689999999
Q ss_pred EEEEcCCcee
Q psy16859 153 IVARNIYGSD 162 (168)
Q Consensus 153 C~~~n~~g~~ 162 (168)
|.|.|..|..
T Consensus 81 C~a~N~~G~~ 90 (100)
T cd07693 81 CVAHNSLGEA 90 (100)
T ss_pred EEEEccccce
Confidence 9999999983
No 60
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.67 E-value=6.5e-16 Score=79.86 Aligned_cols=56 Identities=25% Similarity=0.409 Sum_probs=46.9
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|.+.|||||++|.. . .....|.|.++..+|+|.|+|.+.|..|....+..+.|
T Consensus 10 ~P~P~v~W~kdg~~l~~-~---------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 10 YPPPEFQWYKDGKLISG-K---------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred eCCCEEEEEECCEECcc-c---------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 69999999999999842 1 11238999999999999999999999998777777766
No 61
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.66 E-value=2e-15 Score=82.02 Aligned_cols=77 Identities=23% Similarity=0.407 Sum_probs=62.1
Q ss_pred eEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEEC
Q psy16859 90 MSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168 (168)
Q Consensus 90 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~v 168 (168)
+....|+.+.|.|.+.+.|.|.+.|++++..+....... ......+|.|.++..+|+|.|+|.+.|..|.....+.|
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v 80 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKV 80 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEE
Confidence 345679999999999999999999999988765433221 22234689999999999999999999999998877764
No 62
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.66 E-value=8.8e-16 Score=82.96 Aligned_cols=68 Identities=18% Similarity=0.300 Sum_probs=53.9
Q ss_pred CCceEEEEECCEecC--CCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEEec
Q psy16859 2 VKPEVIWLRGNTPLP--KSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINV 69 (168)
Q Consensus 2 p~p~v~W~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~ 69 (168)
+.+++.|++||++|. ....++...........|.|.+++.+|+|.|+|.+.|..+....++.|.|..+
T Consensus 15 l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~p 84 (85)
T cd05853 15 LDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRGP 84 (85)
T ss_pred CCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEecC
Confidence 478999999999995 23446655432122347999999999999999999999999999999999643
No 63
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.66 E-value=8.2e-16 Score=81.06 Aligned_cols=68 Identities=26% Similarity=0.425 Sum_probs=54.4
Q ss_pred EEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEEC
Q psy16859 98 ISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168 (168)
Q Consensus 98 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~v 168 (168)
+.|.|.+.|.|.|.+.|++++..+.... .. .......|.|.++..+|+|.|+|.|.|..|..+..+.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 68 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TK--KLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTV 68 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCc-ee--EEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEE
Confidence 4689999999999999999887664322 11 12233589999999999999999999999998877654
No 64
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.66 E-value=8e-16 Score=81.00 Aligned_cols=65 Identities=25% Similarity=0.421 Sum_probs=53.2
Q ss_pred EEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEE
Q psy16859 98 ISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFV 166 (168)
Q Consensus 98 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~ 166 (168)
+.|.|.+.|.|.|.+.|++++..+....+. .....+|.|.++..+|+|.|+|.|.|..|.....+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~----~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~ 65 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRT----KKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRL 65 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE----EcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEE
Confidence 468999999999999999999988765322 12235799999999999999999999999765444
No 65
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.66 E-value=8.5e-16 Score=81.20 Aligned_cols=61 Identities=26% Similarity=0.474 Sum_probs=51.4
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|+|.|+|++..+ ....++.+... .+|.|.+++.+|+|.|+|.+.|..|....++.|.|
T Consensus 13 ~P~p~v~W~k~~~~l-~~~~r~~~~~~----g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 13 APKPKFSWSKGTELL-VNNSRISIWDD----GSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred eCCCEEEEEeCCEec-ccCCCEEEcCC----CEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 589999999999887 34567766443 27999999999999999999999999988887764
No 66
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.66 E-value=2e-15 Score=81.35 Aligned_cols=65 Identities=23% Similarity=0.302 Sum_probs=49.5
Q ss_pred CCCceEEEEECCEecCCCCCceEEE--e----cCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYI--E----DSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~--~----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|+|+|||||++|.... +.... . .......|.|.+++.+|+|.|+|.+.|..|.....+.+..
T Consensus 10 ~P~P~v~W~k~g~~i~~~~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~ 80 (81)
T cd04971 10 NPKPTLTWYHNGAVLNESD-YIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF 80 (81)
T ss_pred eCCCcEEEEECCEECcCCC-ceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence 5999999999999985433 33221 1 1123457999999999999999999999999887766653
No 67
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.66 E-value=3.2e-15 Score=80.43 Aligned_cols=75 Identities=23% Similarity=0.368 Sum_probs=61.7
Q ss_pred ceEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEEC
Q psy16859 89 MMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168 (168)
Q Consensus 89 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~v 168 (168)
...+.+|+.+.|.|.+.+. .+.+.|++++..+....++... . ..|.|.+++.+|+|.|+|.+.|..|.....++|
T Consensus 3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~--~--~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v 77 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT--G--EEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSV 77 (79)
T ss_pred cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe--C--CEEEECCCChhhCEEEEEEEeCCCCcccEEEEE
Confidence 4668899999999999985 5689999999888765544332 2 379999999999999999999999998877653
No 68
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.66 E-value=1.2e-15 Score=80.35 Aligned_cols=60 Identities=28% Similarity=0.490 Sum_probs=48.5
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|++.|+|++.++.. ..++... . .+|.|.+++.+|+|.|+|.+.|..|.....+.+.|
T Consensus 10 ~P~p~v~W~k~g~~l~~-~~~~~~~---~--~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 10 YPPPEIQWYKNGKLISE-KNRTKKS---G--HSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred eCCCEEEEEECCEECCC-CCEEEcC---C--CEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 69999999999999843 3343322 2 37999999999999999999999988877777766
No 69
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.65 E-value=7.9e-16 Score=80.46 Aligned_cols=62 Identities=24% Similarity=0.419 Sum_probs=51.1
Q ss_pred EEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeE
Q psy16859 98 ISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRA 164 (168)
Q Consensus 98 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~ 164 (168)
+.|.|.+.|.|.|.+.|++++..+....+. . ....|.|.++..+|+|.|+|.|.|..|..+.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~--~---~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~ 62 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF--K---RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQ 62 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE--c---cCCEEEECcCCHHHCEEEEEEEEECCCceee
Confidence 368899999999999999999988654321 1 1247999999999999999999999996653
No 70
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.65 E-value=3.4e-15 Score=79.95 Aligned_cols=65 Identities=23% Similarity=0.506 Sum_probs=51.9
Q ss_pred EEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceee
Q psy16859 98 ISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDR 163 (168)
Q Consensus 98 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~ 163 (168)
++|.|.+.|.|.|.+.|++++..+......... ......|.|.++..+|+|.|.|.|.|..|...
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 65 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSV-SSKERTLTLRSAGPDDSGLYYCCAHNAFGSVC 65 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEE-eCCCCEEEEeeCCcccCEEEEEEEEeCCCeEe
Confidence 478999999999999999999887654322111 22234799999999999999999999999763
No 71
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.64 E-value=7.6e-15 Score=80.92 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=59.2
Q ss_pred cceEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceee
Q psy16859 88 TMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDR 163 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~ 163 (168)
.++.+.+|+.++|.|.+.|. .|.+.|++++..+... +... .....+|.|.+++.+|+|.|.|.|.|..|...
T Consensus 11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 82 (91)
T cd05740 11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQL--SNDNRTLTFNNVTRSDTGHYQCEASNEVSNMT 82 (91)
T ss_pred CccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEE--eCCCCEEEECcCChhhCEEEEEEEEcCCCCEE
Confidence 46778899999999999999 9999999999877543 2222 22334799999999999999999999999754
No 72
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.64 E-value=2.8e-15 Score=80.19 Aligned_cols=70 Identities=24% Similarity=0.420 Sum_probs=55.8
Q ss_pred EEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEE
Q psy16859 98 ISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVT 167 (168)
Q Consensus 98 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 167 (168)
+.|.|.+.|.|.|.+.|++++..+................|.|.++..+|.|.|+|.+.|..|.....+.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 70 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISS 70 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEE
Confidence 4689999999999999999998876544333222333347999999999999999999999999886654
No 73
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.64 E-value=1.6e-15 Score=85.07 Aligned_cols=66 Identities=21% Similarity=0.320 Sum_probs=51.5
Q ss_pred CCCceEEEEECCEecCCCCCceEEEec-----CCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIED-----SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVI 67 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 67 (168)
||+|++.|+|++.+|.... +...... ....++|.|.+++.+|+|.|+|.+.|..|....++.|.|.
T Consensus 30 ~P~P~v~W~kdg~~l~~~~-~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V~ 100 (101)
T cd05859 30 YPPPQIRWLKDNRTLIENL-TEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQIQ 100 (101)
T ss_pred eCCCceEEEECCEECcCCc-ceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEEE
Confidence 7999999999999985332 2222211 1223589999999999999999999999998888888873
No 74
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.64 E-value=4.5e-15 Score=78.99 Aligned_cols=71 Identities=27% Similarity=0.446 Sum_probs=56.2
Q ss_pred CCeEEEEEEEccCCCCeEEEee-CCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEEC
Q psy16859 95 GEDISFSFRLAGSPKPKVTWMK-GIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168 (168)
Q Consensus 95 g~~~~l~C~~~~~p~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~v 168 (168)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+..... ..+|.|..+..+|.|.|+|.|.|..|..+..+.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYD---NGTLDILITTVKDTGSFTCIASNAAGEATATVEL 72 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEec---CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEE
Confidence 6789999999999999999996 666655443332221 2478999999999999999999999998877653
No 75
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.64 E-value=1.9e-15 Score=80.58 Aligned_cols=70 Identities=19% Similarity=0.258 Sum_probs=51.8
Q ss_pred EEEEEEEccCCCCeEEEeeCCEec-cCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEE
Q psy16859 98 ISFSFRLAGSPKPKVTWMKGIKDI-TTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVT 167 (168)
Q Consensus 98 ~~l~C~~~~~p~~~~~W~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 167 (168)
+.|.|.+.|.|.|.+.|++++... ................|.|.++..+|+|.|+|.|.|..|.....++
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~ 71 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANAT 71 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEE
Confidence 468999999999999999987532 2211111111222247899999999999999999999998876654
No 76
>KOG4222|consensus
Probab=99.64 E-value=1e-15 Score=112.69 Aligned_cols=145 Identities=29% Similarity=0.502 Sum_probs=112.2
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEEeccCCCcccCCCC
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPA 80 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~ 80 (168)
.|.|+|.|.+++..++ ..|+.+..+ . .+|.|.+++..|+|.|.|.+.|..|.......++|+ .+|
T Consensus 252 dP~P~Vrwkk~~~~~P--~~ry~i~~d-~--qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~----------apP 316 (1281)
T KOG4222|consen 252 DPQPTVRWKKDDPSLP--RSRYSILDD-T--QTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQ----------APP 316 (1281)
T ss_pred CCCCceeeeccCCCCC--ccceeeeec-c--ccccccccCCCcccceeeeccccccccccccceEEe----------cCc
Confidence 3899999999887774 346665544 2 389999999999999999999999999999999995 455
Q ss_pred eEEecCCcceEeecCCeEEEEEEEccCCCCeEEEeeCCEe-cc-----CCCCcEEEecCCEEEEEEccCCCCCCeeEEEE
Q psy16859 81 MFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKD-IT-----TSSRTMTETVNDYVRLTLKRATDDENGTYFIV 154 (168)
Q Consensus 81 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~-~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 154 (168)
.+...+ ....+..|..++|.|.+.|.|.|.++|.+.+.. +- ...+.. .......+|.|.+++..|.|.|.|.
T Consensus 317 ~f~kkp-~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r-~svs~~g~L~it~v~~~d~g~Yvcq 394 (1281)
T KOG4222|consen 317 SFGKKP-RDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGR-GSVSPTGTLTITNVRQSDEGYYVCQ 394 (1281)
T ss_pred cccccc-CccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCcc-ceecCCCCcccccccccccceEeec
Confidence 666666 466778899999999999999999999986642 11 111111 1112234899999999999999999
Q ss_pred EEcCCcee
Q psy16859 155 ARNIYGSD 162 (168)
Q Consensus 155 ~~n~~g~~ 162 (168)
..+..|+.
T Consensus 395 ~~~~~~ss 402 (1281)
T KOG4222|consen 395 TQTSAGSS 402 (1281)
T ss_pred cccccccc
Confidence 88877654
No 77
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.64 E-value=1.4e-14 Score=82.59 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=58.4
Q ss_pred cCCeEEEEEEEccCCCCeEEEeeCCEeccCCC-CcEEEe--c--CCEEEEEEccCC-CCCCeeEEEEEEcCCceeeEEEE
Q psy16859 94 LGEDISFSFRLAGSPKPKVTWMKGIKDITTSS-RTMTET--V--NDYVRLTLKRAT-DDENGTYFIVARNIYGSDRAFVT 167 (168)
Q Consensus 94 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~--~--~~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~~~~~ 167 (168)
.|..+.|.|.+.|.|.+.+.|++++..+.... ++.... . ...+.|.|.++. .+|.|.|+|.|.|..|.....+.
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~ 101 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ 101 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence 56789999999999999999999998876432 332111 1 113579999987 58999999999999999887665
Q ss_pred C
Q psy16859 168 V 168 (168)
Q Consensus 168 v 168 (168)
|
T Consensus 102 L 102 (109)
T cd05773 102 L 102 (109)
T ss_pred E
Confidence 3
No 78
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.64 E-value=2.8e-14 Score=79.31 Aligned_cols=67 Identities=19% Similarity=0.299 Sum_probs=52.4
Q ss_pred CCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCC-CCCCeeEEEEEEcCCceee
Q psy16859 95 GEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRAT-DDENGTYFIVARNIYGSDR 163 (168)
Q Consensus 95 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~ 163 (168)
|..+.|.|.+.|.|.+.+.|++++..+............ +.|.|.++. ..|.|.|.|.|.|..|...
T Consensus 19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~--g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~ 86 (94)
T cd05850 19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVA--GNLVINNPQKARDAGSYQCLAINRCGTVV 86 (94)
T ss_pred CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEEC--CeEEEccCCccCcCEEEEEEEEcCcCcEE
Confidence 468999999999999999999999888643322222222 368887755 5899999999999999775
No 79
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.63 E-value=3.3e-15 Score=78.30 Aligned_cols=61 Identities=26% Similarity=0.444 Sum_probs=45.9
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|+|++.|+|++.++.....++... +. +|.|.+++.+|+|.|+|.+.+..........+++
T Consensus 10 ~P~P~v~W~kdg~~l~~~~~~~~~~---~~--~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 10 FPAPEVIWLKDGLPAAEKCSRYHVD---GY--SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred cCCCeEEEEECCEECCCCCcEEEeC---CC--EEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence 6999999999999985433444332 22 7999999999999999999998655554444443
No 80
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.63 E-value=6.1e-15 Score=81.74 Aligned_cols=65 Identities=31% Similarity=0.532 Sum_probs=52.3
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|++.|+|++.++. ...++.+....+...+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 28 ~P~p~v~W~k~g~~l~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 92 (92)
T cd05737 28 DPDPEVSWLKNDQALA-LSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVSV 92 (92)
T ss_pred cCCCeEEEEECCEECc-cCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEeC
Confidence 5899999999999984 4456665543234568999999999999999999999998877766654
No 81
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.63 E-value=1.1e-14 Score=79.84 Aligned_cols=70 Identities=17% Similarity=0.293 Sum_probs=56.3
Q ss_pred CCCceEEEEECCEecCCCCCceEEEec---CCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEEecc
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIED---SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVS 70 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~ 70 (168)
.|+|.+.|++++..+.....++.+... .....+|.|.++..+|+|.|+|.+.|..|.....+.|.|..++
T Consensus 13 ~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~~P 85 (88)
T cd05735 13 EKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPP 85 (88)
T ss_pred CCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEeCCC
Confidence 488999999999988544456665432 1224689999999999999999999999999999999996543
No 82
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.63 E-value=2.5e-15 Score=78.87 Aligned_cols=66 Identities=26% Similarity=0.457 Sum_probs=52.9
Q ss_pred EEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEE
Q psy16859 98 ISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVT 167 (168)
Q Consensus 98 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 167 (168)
+.|.|.+.|.|.|.+.|++++..+... +.... ....|.|.++..+|+|.|+|.+.|..|.....+.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 66 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEIL---DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASAS 66 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCC-cEEEe---eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEE
Confidence 478999999999999999987665432 23222 2247999999999999999999999998886654
No 83
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.63 E-value=1.2e-14 Score=79.22 Aligned_cols=73 Identities=21% Similarity=0.234 Sum_probs=56.2
Q ss_pred CeEEEEEEEccCCCC--eEEEeeCCEeccCCC---CcEE-EecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEEC
Q psy16859 96 EDISFSFRLAGSPKP--KVTWMKGIKDITTSS---RTMT-ETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168 (168)
Q Consensus 96 ~~~~l~C~~~~~p~~--~~~W~~~~~~~~~~~---~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~v 168 (168)
+.+.|.|.+.|.|.| .+.|++++..+.... ++.. ......++|.|.+++..|+|.|+|.|.|..|...+.+.|
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L 79 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEE
Confidence 468999999999987 589999998775432 2211 112234689999999999999999999999998876643
No 84
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.62 E-value=2.6e-15 Score=78.51 Aligned_cols=59 Identities=25% Similarity=0.401 Sum_probs=46.5
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|.+.||||+.++.. ..++ . . + ..|.|.++..+|+|.|+|.+.|..|.......+.+
T Consensus 10 ~P~P~v~W~k~g~~l~~-~~~~--~-~-~--~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 10 YPPPEVKWYKNGQLIVL-NHTF--K-R-G--VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred eCCCEEEEEECCEECCC-CCEE--c-c-C--CEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 69999999999999843 2222 1 1 2 37999999999999999999999987766555555
No 85
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.62 E-value=9.5e-15 Score=76.98 Aligned_cols=61 Identities=23% Similarity=0.481 Sum_probs=49.8
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|++.|+|++..+. ...++.+... + .|.|.+++.+|+|.|+|.+.|..|....++.|.|
T Consensus 11 ~P~p~v~W~k~g~~~~-~~~~~~~~~~-~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 11 KPTPTVKWVKNGDMVI-PSDYFKIVKE-H---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred eCCCEEEEEECCeECC-CCCCEEEEec-C---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 5999999999999874 3445655443 2 4888899999999999999999999988887764
No 86
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.62 E-value=3e-14 Score=78.86 Aligned_cols=65 Identities=28% Similarity=0.424 Sum_probs=51.7
Q ss_pred CCeEEEEEEEccCCCCeEEEeeCCEeccCC-CCcEEEecCCEEEEEEccCC-CCCCeeEEEEEEcCCceee
Q psy16859 95 GEDISFSFRLAGSPKPKVTWMKGIKDITTS-SRTMTETVNDYVRLTLKRAT-DDENGTYFIVARNIYGSDR 163 (168)
Q Consensus 95 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~ 163 (168)
+..+.|.|.+.|.|.|.+.|++++..+... .++. . . .+.|.|.++. .+|+|.|.|.|.|..|...
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~-~-~--~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~ 85 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYS-M-V--GGNLVINNPDKYKDAGRYVCIVSNIYGKVR 85 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEE-E-E--CCEEEECcCCcCCCCEEEEEEEEeCcceEE
Confidence 457999999999999999999999877532 2222 1 1 2478898875 6899999999999999875
No 87
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.62 E-value=7.2e-15 Score=82.34 Aligned_cols=66 Identities=21% Similarity=0.200 Sum_probs=51.3
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecC----CCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDS----NNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVI 67 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 67 (168)
.|+|++.|+|||.+|.. ..+..+.... ....+|.|.++..+|+|.|+|.+.|..|.....+.|.|.
T Consensus 31 ~P~p~v~W~Kdg~~i~~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~V~ 100 (101)
T cd04975 31 PPPPHINWTYDNRTLTN-KLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLTFELYVN 100 (101)
T ss_pred CCCCccEEEeCCeeCCC-CcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEEEEEEEEE
Confidence 48899999999999953 3333322220 124689999999999999999999999998888888873
No 88
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.62 E-value=8.8e-15 Score=78.33 Aligned_cols=63 Identities=22% Similarity=0.481 Sum_probs=48.8
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeE--EEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET--FARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~--~~~l~v 66 (168)
+|.|.+.|+|++.++.....++.+... . .+|.|.+++.+|+|.|.|.+.|..|.... .+.|.|
T Consensus 10 ~P~p~v~W~k~g~~l~~~~~~~~~~~~-~--~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 10 HPRPTYQWFRDGTPLSDGQGNYSVSSK-E--RTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred cCCCcEEEEECCEECCCCCccEEEeCC-C--CEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 589999999999998544445544332 2 37999999999999999999999998755 444544
No 89
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.62 E-value=5.5e-15 Score=79.13 Aligned_cols=66 Identities=20% Similarity=0.318 Sum_probs=50.0
Q ss_pred EEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCC----CCCeeEEEEEEcCCceee
Q psy16859 98 ISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATD----DENGTYFIVARNIYGSDR 163 (168)
Q Consensus 98 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~n~~g~~~ 163 (168)
+.|.|.+.|.|.|.+.|++++..+..............+.|.|..+.. +|+|.|.|.|.|..|...
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI 70 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence 468999999999999999999887543322222223345778877643 689999999999999765
No 90
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.61 E-value=1.6e-14 Score=77.23 Aligned_cols=61 Identities=26% Similarity=0.479 Sum_probs=49.4
Q ss_pred CCCceEEEEECCEecCCCC--CceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSS--PRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|+++|++++.++.... .++... . .+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 13 ~P~p~i~W~k~g~~i~~~~~~~~~~~~---~--~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 13 IPTPNITWSINGAPIEGTDPDPRRHVS---S--GALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred eCCCeEEEEECCEECCCCCCCceEEee---C--CEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 4899999999999885322 233332 2 27999999999999999999999999988888877
No 91
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.61 E-value=5.4e-15 Score=81.92 Aligned_cols=78 Identities=22% Similarity=0.200 Sum_probs=59.9
Q ss_pred cceEeecCCeEEEEEEEcc-----CCCCeEEEeeCCEeccCC--CCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCc
Q psy16859 88 TMMSVALGEDISFSFRLAG-----SPKPKVTWMKGIKDITTS--SRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG 160 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~-----~p~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 160 (168)
....+.+|+.+.|.|.+.+ .|.+.+.|++++..+... ....... ....|.|.++..+|+|.|+|.+.|..|
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~--~~~~L~I~~~~~~DsG~Y~C~~~N~~g 84 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ--QKDLLWFLPAALEDSGLYTCVVRNSTY 84 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee--cCCeEEEccCCcccCeEEEEEEcCCCc
Confidence 3456778999999999998 688899999988654321 1112211 224799999999999999999999999
Q ss_pred eeeEEEE
Q psy16859 161 SDRAFVT 167 (168)
Q Consensus 161 ~~~~~~~ 167 (168)
..+..+.
T Consensus 85 ~~~~~~~ 91 (94)
T cd05756 85 CMKVSIS 91 (94)
T ss_pred cEEEEEE
Confidence 9887664
No 92
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.61 E-value=5e-15 Score=78.20 Aligned_cols=68 Identities=24% Similarity=0.420 Sum_probs=53.7
Q ss_pred EEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEEC
Q psy16859 98 ISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168 (168)
Q Consensus 98 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~v 168 (168)
+.|.|.+.|.|.|.+.|++++..+.... .. .......|.|.++..+|+|.|+|.|.|..|..+..+.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 68 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADR-TK--FENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISV 68 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCc-ee--EecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEE
Confidence 4689999999999999999887664322 11 11223579999999999999999999999998876653
No 93
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.61 E-value=1.1e-14 Score=78.84 Aligned_cols=74 Identities=30% Similarity=0.465 Sum_probs=54.2
Q ss_pred CCeEEEEEEEccCCCCeEEEeeCCE---e-ccCCCCc-EEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEEC
Q psy16859 95 GEDISFSFRLAGSPKPKVTWMKGIK---D-ITTSSRT-MTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168 (168)
Q Consensus 95 g~~~~l~C~~~~~p~~~~~W~~~~~---~-~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~v 168 (168)
|+.+.|.|.+.|.|.|.+.|+++.. . +...... ..........|.|.++..+|+|.|+|.+.|..|.....+.|
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 79 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPL 79 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEE
Confidence 6789999999999999999998632 1 1111110 00111223579999999999999999999999999877654
No 94
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.61 E-value=9.2e-15 Score=80.68 Aligned_cols=73 Identities=18% Similarity=0.291 Sum_probs=53.2
Q ss_pred CCeEEEEEEEccCCCCeEEEeeC----CEeccCCCC--cEEEe-------cCCEEEEEEccCCCCCCeeEEEEEEcCCce
Q psy16859 95 GEDISFSFRLAGSPKPKVTWMKG----IKDITTSSR--TMTET-------VNDYVRLTLKRATDDENGTYFIVARNIYGS 161 (168)
Q Consensus 95 g~~~~l~C~~~~~p~~~~~W~~~----~~~~~~~~~--~~~~~-------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 161 (168)
|+.+.|.|.+.|.|.|.+.|+++ +..+..... ..... ......|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 67899999999999999999984 333322111 11100 112357999999999999999999999998
Q ss_pred eeEEEE
Q psy16859 162 DRAFVT 167 (168)
Q Consensus 162 ~~~~~~ 167 (168)
......
T Consensus 81 ~~~~a~ 86 (90)
T cd05858 81 SHHSAW 86 (90)
T ss_pred ccceEE
Confidence 875543
No 95
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.61 E-value=4.7e-15 Score=78.83 Aligned_cols=61 Identities=30% Similarity=0.567 Sum_probs=49.5
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|.+.|+|++..+.. ..++.+... .+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 14 ~P~p~i~W~k~g~~~~~-~~~~~~~~~----~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 14 YPQPVIAWTKGGSQLSV-DRRHLVLSS----GTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred ecCCEEEEEECCEECCC-CCCeEEccC----CeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 59999999999998843 334443322 37999999999999999999999999888877764
No 96
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.61 E-value=2.8e-14 Score=78.20 Aligned_cols=73 Identities=27% Similarity=0.398 Sum_probs=59.3
Q ss_pred cceEeecCCeEEEEEEE-ccCCCCeEEEeeCCEeccCCC-CcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceee
Q psy16859 88 TMMSVALGEDISFSFRL-AGSPKPKVTWMKGIKDITTSS-RTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDR 163 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~ 163 (168)
....+..|+++.|.|.+ .+.|.+.+.|++++..+.... +.... . .+.|.|.++..+|+|.|+|.+.|..|...
T Consensus 4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~-~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 78 (86)
T cd05724 4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIV-D--DGNLLIAEARKSDEGTYKCVATNMVGERE 78 (86)
T ss_pred ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEc-c--CCEEEEeECCcccCEEEEEEEEeccCcee
Confidence 45678899999999998 688999999999998876532 22221 1 34799999999999999999999998764
No 97
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.61 E-value=4.2e-14 Score=78.24 Aligned_cols=79 Identities=22% Similarity=0.355 Sum_probs=58.9
Q ss_pred cceEeecCCeEEEEEEEccCCCCeEEEee-CCEeccCCCCcEEEe-cCCEEEEEEccCCCCCCeeEEEEEEcCCce-eeE
Q psy16859 88 TMMSVALGEDISFSFRLAGSPKPKVTWMK-GIKDITTSSRTMTET-VNDYVRLTLKRATDDENGTYFIVARNIYGS-DRA 164 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~-~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~-~~~ 164 (168)
....+..|+.+.|.|.+.|.| +.+.|++ ++..+....+..... .....+|.|.++..+|+|.|+|.|.|..|. ..+
T Consensus 8 ~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~ 86 (92)
T cd04977 8 SQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEA 86 (92)
T ss_pred CcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCccee
Confidence 356788999999999999987 4999997 565554433333222 234468999999999999999999998653 444
Q ss_pred EEE
Q psy16859 165 FVT 167 (168)
Q Consensus 165 ~~~ 167 (168)
++.
T Consensus 87 sv~ 89 (92)
T cd04977 87 TVN 89 (92)
T ss_pred EEE
Confidence 443
No 98
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.60 E-value=1.8e-14 Score=76.98 Aligned_cols=67 Identities=18% Similarity=0.287 Sum_probs=48.4
Q ss_pred EEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCC----CCCeeEEEEEEcCCceeeE
Q psy16859 98 ISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATD----DENGTYFIVARNIYGSDRA 164 (168)
Q Consensus 98 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~n~~g~~~~ 164 (168)
+.|.|.+.|.|.|.+.|++++..+..............++|.|..+.. .|.|.|+|.|.|..|....
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 468999999999999999999877433322222222234677766653 3789999999999998764
No 99
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.60 E-value=1e-14 Score=80.47 Aligned_cols=70 Identities=24% Similarity=0.366 Sum_probs=54.1
Q ss_pred CCeEEEEEEEccCCCCeEEEeeCCEecc--------CCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEE
Q psy16859 95 GEDISFSFRLAGSPKPKVTWMKGIKDIT--------TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFV 166 (168)
Q Consensus 95 g~~~~l~C~~~~~p~~~~~W~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~ 166 (168)
|+.+.|.|.+.|.|.|.+.|++++..+. ...++.. .....|.|.++..+|+|.|+|.+.|..|.....+
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v---~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 77 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSV---SQTGDLTITNVQRSDVGYYICQTLNVAGSILTKA 77 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEE---CCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence 6789999999999999999999775421 1112221 1224799999999999999999999999887655
Q ss_pred E
Q psy16859 167 T 167 (168)
Q Consensus 167 ~ 167 (168)
.
T Consensus 78 ~ 78 (90)
T cd05726 78 Y 78 (90)
T ss_pred E
Confidence 4
No 100
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.60 E-value=1.8e-14 Score=77.37 Aligned_cols=64 Identities=22% Similarity=0.343 Sum_probs=52.0
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|.+.|++++..+. ...++.+... .+...|.|.+++.+|+|.|+|.+.|..|.....+.+.+
T Consensus 13 ~P~p~v~W~~~~~~~~-~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 13 VPTPIINWRLNWGHVP-DSARVSITSE-GGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred ecCCEEEEEECCeECC-CCCCEEEEEC-CCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 5899999999998884 4456766655 56678999999999999999999999998876554443
No 101
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.60 E-value=2.2e-14 Score=76.18 Aligned_cols=64 Identities=23% Similarity=0.433 Sum_probs=50.4
Q ss_pred EEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCcee
Q psy16859 98 ISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSD 162 (168)
Q Consensus 98 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 162 (168)
++|.|.+.|.|.|.+.|++++..+.......... ...+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~-~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~ 64 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQ-LRSGALQIENSEESDQGKYECVATNSAGTR 64 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEE-cCCcEEEECCCChhhCEEEEEEEECCCCce
Confidence 4789999999999999999998776322112221 223479999999999999999999999974
No 102
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.60 E-value=7.9e-15 Score=77.28 Aligned_cols=61 Identities=33% Similarity=0.514 Sum_probs=48.6
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|.+.|++++..+... +...... ..+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 10 ~P~P~v~W~k~~~~~~~~--~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 10 LPTPEVHWDRIDGPLSPN--RTKKLNN---NKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred ecCCeEEEEECCcCCCCC--ceeEEcC---CCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 599999999999877432 2222222 238999999999999999999999999888887776
No 103
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.59 E-value=1.1e-14 Score=76.29 Aligned_cols=59 Identities=20% Similarity=0.464 Sum_probs=48.1
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARV 64 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 64 (168)
+|.|.+.|+|++..+. ...++.+... .+|.|.+++.+|+|.|+|.+.|..|....++.|
T Consensus 10 ~P~p~i~W~k~g~~~~-~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 10 DPEPTITWNKDGVQVT-ESGKFHISPE----GYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred eCCCEEEEEECCEECC-CCCCEEECCC----CEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 5899999999999884 3445554322 379999999999999999999999988776655
No 104
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.59 E-value=2.4e-14 Score=76.37 Aligned_cols=63 Identities=33% Similarity=0.552 Sum_probs=49.2
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|+|.|+++++++...........+ +. .|.|.+++.+|+|.|+|.+.|..|....++.|.|
T Consensus 13 ~P~P~i~W~k~g~~i~~~~~~~~~~~~-~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 13 NPKPSISWLTNGVPIEIAPTDPSRKVD-GD--TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred eCCCeEEEEECCEEccccCCCceEEec-CC--EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 599999999999988422111111112 22 6899999999999999999999999999988887
No 105
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.59 E-value=2.5e-14 Score=76.48 Aligned_cols=66 Identities=21% Similarity=0.308 Sum_probs=48.1
Q ss_pred EEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCC----CCCCeeEEEEEEcCCceee
Q psy16859 98 ISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRAT----DDENGTYFIVARNIYGSDR 163 (168)
Q Consensus 98 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~d~g~y~C~~~n~~g~~~ 163 (168)
+.|.|.+.|.|.|.+.|++++..+..............++|.|..+. .+|.|.|.|.|.|..|...
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL 70 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence 46899999999999999999987643322222222233578887653 2469999999999999775
No 106
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.59 E-value=3.2e-14 Score=76.52 Aligned_cols=68 Identities=18% Similarity=0.329 Sum_probs=54.8
Q ss_pred cceEeecCCeEEEEEEEccCCCC-eEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceee
Q psy16859 88 TMMSVALGEDISFSFRLAGSPKP-KVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDR 163 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~ 163 (168)
..+.+..|+.+.|.|.+.|.|.| .+.|++++..+.... ....+.|.|..+ .|.|.|.|.|.|..|...
T Consensus 6 ~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~------~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~ 74 (81)
T cd05749 6 EDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPP------APSPSVLNVPGL--NETSKFSCEAHNAKGVTT 74 (81)
T ss_pred CceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCC------CCCCCEEEEccc--cCCeEEEEEEEeccCcEE
Confidence 46788999999999999999999 799999998875411 112246888776 478999999999999665
No 107
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.59 E-value=1.7e-14 Score=79.59 Aligned_cols=73 Identities=21% Similarity=0.363 Sum_probs=52.4
Q ss_pred CCeEEEEEEEccCCCCeEEEeeCC----EeccCCCC-c-EEEe-------cCCEEEEEEccCCCCCCeeEEEEEEcCCce
Q psy16859 95 GEDISFSFRLAGSPKPKVTWMKGI----KDITTSSR-T-MTET-------VNDYVRLTLKRATDDENGTYFIVARNIYGS 161 (168)
Q Consensus 95 g~~~~l~C~~~~~p~~~~~W~~~~----~~~~~~~~-~-~~~~-------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 161 (168)
|+.+.|.|.+.|.|.|.+.|++++ ..+..... . .... ......|.|.++..+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999853 22211111 1 1110 012247999999999999999999999998
Q ss_pred eeEEEE
Q psy16859 162 DRAFVT 167 (168)
Q Consensus 162 ~~~~~~ 167 (168)
..+.+.
T Consensus 81 ~~~sa~ 86 (90)
T cd04974 81 SHHSAW 86 (90)
T ss_pred ccCCEE
Confidence 875443
No 108
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.59 E-value=6.7e-14 Score=78.04 Aligned_cols=74 Identities=22% Similarity=0.309 Sum_probs=55.5
Q ss_pred cceEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccC-----CCCCCeeEEEEEEcC-Cce
Q psy16859 88 TMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRA-----TDDENGTYFIVARNI-YGS 161 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~g~y~C~~~n~-~g~ 161 (168)
....+..|+++.|.|.+.+.|.|.+.|++++..+............ .+.+.|..+ ...|.|.|.|.|.|. .|.
T Consensus 7 ~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~-~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~ 85 (95)
T cd05722 7 SDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLP-NGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGS 85 (95)
T ss_pred CCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEcc-CCeEEEeeeeccCCCCCcCEEEEEEEECCccCc
Confidence 3566778999999999999999999999999888654332111111 124555544 578999999999999 987
Q ss_pred e
Q psy16859 162 D 162 (168)
Q Consensus 162 ~ 162 (168)
.
T Consensus 86 ~ 86 (95)
T cd05722 86 I 86 (95)
T ss_pred E
Confidence 7
No 109
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.59 E-value=3.1e-14 Score=77.78 Aligned_cols=72 Identities=18% Similarity=0.177 Sum_probs=54.8
Q ss_pred CeEEEEEEEccCCCC--eEEEeeCCEeccCCCC---cE-EEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEE
Q psy16859 96 EDISFSFRLAGSPKP--KVTWMKGIKDITTSSR---TM-TETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVT 167 (168)
Q Consensus 96 ~~~~l~C~~~~~p~~--~~~W~~~~~~~~~~~~---~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 167 (168)
+.+.|.|.+.+.|.+ .+.|++++..+..... +. .......+.|.|.+++..|+|.|+|.|.|..|...+.+.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 78 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASAD 78 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEE
Confidence 468999999999877 5799999987754321 11 111223468999999999999999999999998876554
No 110
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.58 E-value=1.9e-14 Score=75.42 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=50.7
Q ss_pred EEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEE
Q psy16859 98 ISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAF 165 (168)
Q Consensus 98 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~ 165 (168)
+.|.|.+.|.|.|.+.|++++..+..... ..... ..+|.|.++..+|+|.|+|.|.|........
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~-~~~~~--~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~ 65 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCS-RYHVD--GYSLVIKDVTEEDAGIYTILLGIKQYNLFKN 65 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCc-EEEeC--CCEEEECcCCHHHCEEEEEEEEccccceEee
Confidence 36899999999999999999988765422 11222 2379999999999999999999986655433
No 111
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.58 E-value=6e-14 Score=76.41 Aligned_cols=68 Identities=16% Similarity=0.292 Sum_probs=51.8
Q ss_pred CCCc--eEEEEECCEecCCC--CCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEEe
Q psy16859 1 YVKP--EVIWLRGNTPLPKS--SPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVIN 68 (168)
Q Consensus 1 ~p~p--~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 68 (168)
+|.| ++.|++++.++... ..++..........+|.|.+++..|+|.|+|.+.|..|....++.|.|..
T Consensus 12 ~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~ 83 (85)
T cd05854 12 DPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVRG 83 (85)
T ss_pred CCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEEC
Confidence 3665 68999999988432 23443222212345899999999999999999999999999999999954
No 112
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.58 E-value=1.7e-14 Score=76.51 Aligned_cols=61 Identities=31% Similarity=0.523 Sum_probs=50.5
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|++.|++++..+. ...++.+... .+|.|.+++.+|+|.|+|.+.|..|....++.|.|
T Consensus 13 ~P~p~v~W~k~~~~~~-~~~~~~~~~~----~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 13 APKPTISWSKGTELLT-NSSRICIWPD----GSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred cCCCEEEEEECCEEcc-cCCCEEECCC----CeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 5899999999999884 4456664433 27999999999999999999999999888877764
No 113
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.58 E-value=2.3e-14 Score=76.43 Aligned_cols=63 Identities=21% Similarity=0.481 Sum_probs=48.6
Q ss_pred CCCceEEEEECCEec-CC-CCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPL-PK-SSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~-~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|++.|+|++... .. ...++..... +. .|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 10 ~P~P~v~W~k~~~~~~~~~~~~~~~~~~~-~~--~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 10 HPTPQIAWQKDGGTDFPAARERRMHVMPE-DD--VFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred ccCCEEEEEeCCCccCCcccccceEEecC-CC--EEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 599999999998643 11 2234444322 33 7999999999999999999999999888888877
No 114
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.58 E-value=6e-14 Score=74.99 Aligned_cols=71 Identities=18% Similarity=0.338 Sum_probs=55.1
Q ss_pred EEEEEEEcc-CCCCeEEEeeCCEeccCCC----CcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEEC
Q psy16859 98 ISFSFRLAG-SPKPKVTWMKGIKDITTSS----RTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168 (168)
Q Consensus 98 ~~l~C~~~~-~p~~~~~W~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~v 168 (168)
+.|.|.+.+ .|.+.+.|++++..+.... +...........|.|.++..+|+|.|+|.+.|..|....+++|
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~~ 76 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTANV 76 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEeC
Confidence 468999874 6778999999988775332 1222222344689999999999999999999999999988765
No 115
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.57 E-value=5.7e-14 Score=76.76 Aligned_cols=64 Identities=31% Similarity=0.588 Sum_probs=49.2
Q ss_pred CCCceEEEEECCEecCCCCCceE-EEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFK-YIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|.+.|+|++..+... .+.. .... ....+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 21 ~P~p~i~W~k~g~~l~~~-~~~~~~~~~-~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 85 (85)
T cd05857 21 NPTPTMRWLKNGKEFKQE-HRIGGYKVR-NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 85 (85)
T ss_pred CCCCEEEEEECCEECCCC-CceeeeEEe-CCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEEC
Confidence 589999999999988532 2221 1111 23357999999999999999999999999888887764
No 116
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.57 E-value=2e-13 Score=75.66 Aligned_cols=81 Identities=19% Similarity=0.311 Sum_probs=64.0
Q ss_pred cceEeecCCeEEEEEEEccCCCCe-EEEeeCCEeccCC--CCcEEEec----CCEEEEEEccCCCCC-CeeEEEEEEcCC
Q psy16859 88 TMMSVALGEDISFSFRLAGSPKPK-VTWMKGIKDITTS--SRTMTETV----NDYVRLTLKRATDDE-NGTYFIVARNIY 159 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p~~~-~~W~~~~~~~~~~--~~~~~~~~----~~~~~l~i~~~~~~d-~g~y~C~~~n~~ 159 (168)
..+.+.+|+.+.|.|.+.+.|.|. +.|.+.+..+... .++..... ...+.|.|.++...| .|.|.|.|.|.+
T Consensus 9 ~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~ 88 (98)
T cd05898 9 QVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSF 88 (98)
T ss_pred ceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCC
Confidence 567788999999999998888775 8999887766543 35554433 245789999998766 799999999999
Q ss_pred ceeeEEEEC
Q psy16859 160 GSDRAFVTV 168 (168)
Q Consensus 160 g~~~~~~~v 168 (168)
|+....++|
T Consensus 89 G~d~~~i~L 97 (98)
T cd05898 89 GSGTAIIQL 97 (98)
T ss_pred ccceEEEEe
Confidence 999988765
No 117
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.57 E-value=4.2e-14 Score=78.61 Aligned_cols=66 Identities=24% Similarity=0.470 Sum_probs=50.4
Q ss_pred CC-CceEEEEE-CCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEccc-ceeeEEEEEEE
Q psy16859 1 YV-KPEVIWLR-GNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEY-GYTETFARVDV 66 (168)
Q Consensus 1 ~p-~p~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~~l~v 66 (168)
.| +|++.|++ ++..+.....++......+...+|.|.+++.+|+|.|+|.+.|.. |....++.|.|
T Consensus 27 ~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 27 EAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI 95 (96)
T ss_pred CCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence 36 47999998 777664434466544332445689999999999999999999986 77777777776
No 118
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.57 E-value=6.8e-14 Score=78.06 Aligned_cols=64 Identities=20% Similarity=0.489 Sum_probs=52.2
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVI 67 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 67 (168)
+|.|.+.|++++..+.....++..... ...|.|.+++.+|+|.|+|.+.|..|.....+.|.|.
T Consensus 30 ~P~p~v~W~k~g~~~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 93 (95)
T cd05730 30 FPEPTMTWTKDGEPIESGEEKYSFNED---GSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVF 93 (95)
T ss_pred eCCCEEEEEECCEECcCCCCEEEEeCC---CCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEE
Confidence 589999999999988544345543322 2379999999999999999999999998888888885
No 119
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.57 E-value=6.6e-14 Score=74.87 Aligned_cols=63 Identities=32% Similarity=0.490 Sum_probs=49.6
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|+|.|++++..+............ . ..|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 13 ~P~p~i~W~~~g~~~~~~~~~~~~~~~-~--~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 13 IPQPTITWRLNGVPIEELPPDPRRRVD-G--GTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred eCCCEEEEEECCEECCCCCCcceEEcc-C--CEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 589999999999988533322122222 2 37999999999999999999999999988888877
No 120
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.57 E-value=7.2e-14 Score=77.43 Aligned_cols=62 Identities=27% Similarity=0.371 Sum_probs=51.7
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARV 64 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 64 (168)
+|.|.+.|++++..+. ...++.+... ...++|.|.++..+|+|.|+|.+.|..|.....+.|
T Consensus 30 ~P~p~v~W~k~g~~l~-~~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 91 (92)
T cd05747 30 EPAPTVTWMREGQIIV-SSQRHQITST-EYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL 91 (92)
T ss_pred cCCCEEEEEECCEECC-CCCcEEEEEc-CCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEe
Confidence 5899999999999884 4456776655 555789999999999999999999999988776665
No 121
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.57 E-value=3.1e-14 Score=76.92 Aligned_cols=72 Identities=13% Similarity=0.071 Sum_probs=54.7
Q ss_pred CeEEEEEEEccC--CCCeEEEeeCCEeccCC--C-CcEEEec-CCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEE
Q psy16859 96 EDISFSFRLAGS--PKPKVTWMKGIKDITTS--S-RTMTETV-NDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVT 167 (168)
Q Consensus 96 ~~~~l~C~~~~~--p~~~~~W~~~~~~~~~~--~-~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 167 (168)
+++.|.|.+.+. +.+.+.|++++..+... . ++..... ...+.|.|.+++..|+|.|+|.|.|..++.++...
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~ 78 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAAD 78 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEE
Confidence 368899999874 47789999999998632 2 2222111 23358999999999999999999999998886654
No 122
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.56 E-value=2.4e-13 Score=75.20 Aligned_cols=69 Identities=23% Similarity=0.390 Sum_probs=52.6
Q ss_pred cCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCC-CCCCeeEEEEEEcCCceeeE
Q psy16859 94 LGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRAT-DDENGTYFIVARNIYGSDRA 164 (168)
Q Consensus 94 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~~ 164 (168)
.+..+.|.|.+.|.|.+.+.|++++..+............ ..|.|.++. .+|+|.|+|.|.|..|....
T Consensus 18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~--~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVG--GNLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEEC--CEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 4467999999999999999999999887433222222222 368888776 48999999999999998753
No 123
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.56 E-value=3.2e-14 Score=78.07 Aligned_cols=60 Identities=25% Similarity=0.462 Sum_probs=48.7
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|.+.|+|++.++. ...++.. . +. .|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 28 ~P~P~v~W~k~~~~~~-~~~~~~~--~-~~--~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 87 (88)
T cd05851 28 NPVPVIRWRKILEPMP-ATAEISM--S-GA--VLKIFNIQPEDEGTYECEAENIKGKDKHQARVYV 87 (88)
T ss_pred cCCCEEEEEECCcCCC-CCCEEec--C-CC--EEEECcCChhhCEEEEEEEEcCCCceEEEEEEEE
Confidence 5899999999998773 2333322 2 22 7999999999999999999999999888888877
No 124
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.56 E-value=4.5e-14 Score=74.04 Aligned_cols=60 Identities=33% Similarity=0.583 Sum_probs=48.4
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
.|.|.+.|+|++..+. ..++..... .+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 10 ~P~p~v~W~k~~~~~~--~~~~~~~~~----~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 10 DPVPTVLWRKEDGELP--KGRAEILDD----KSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CCCCEEEEEECCccCC--CCcEEEeeC----CEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 5899999999987763 335554432 27999999999999999999999998887777654
No 125
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.56 E-value=7.3e-14 Score=77.17 Aligned_cols=64 Identities=34% Similarity=0.584 Sum_probs=55.7
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
.|.|++.|++++..+. ...++.+... ....+|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus 27 ~p~~~v~W~~~~~~l~-~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 27 NPPPTVTWYKNGRPLT-SSQRYQIESD-GGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLTV 90 (90)
T ss_dssp SSSSEEEEEETTEEEE-SSSSEEEEEE-TTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCCccccccccccee-eeeeeeeecc-cceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEEC
Confidence 3789999999999984 4667877776 67889999999999999999999999998888887765
No 126
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.55 E-value=3.1e-14 Score=75.15 Aligned_cols=61 Identities=31% Similarity=0.546 Sum_probs=48.1
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|.+.|++++..+.. .+..... ....|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 10 ~P~p~v~W~k~~~~~~~--~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 10 LPTPEISWIKIGGELPA--DRTKFEN---FNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred ecCCeEEEEECCeECCC--CceeEec---CCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 59999999999987732 2322221 2237999999999999999999999998888777766
No 127
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.55 E-value=6.4e-14 Score=76.45 Aligned_cols=60 Identities=25% Similarity=0.475 Sum_probs=49.9
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|.+.|++++.++. ...++..... .|.|.+++.+|+|.|+|.+.|..|....++.|.|
T Consensus 26 ~p~p~v~W~k~g~~~~-~~~~~~~~~~-----~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 85 (85)
T cd05728 26 NPRPAYRWLKNGQPLA-SENRIEVEAG-----DLRITKLSLSDSGMYQCVAENKHGTIYASAELAV 85 (85)
T ss_pred eCCCEEEEEECCEECC-CCCeEEEeCC-----EEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence 5899999999999984 3445554433 7999999999999999999999999888777764
No 128
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.55 E-value=1.3e-13 Score=73.65 Aligned_cols=75 Identities=19% Similarity=0.291 Sum_probs=58.6
Q ss_pred EEecCCcceEeecCCeEEEEEEEccCCC-CeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCc
Q psy16859 82 FLTRPDTMMSVALGEDISFSFRLAGSPK-PKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG 160 (168)
Q Consensus 82 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 160 (168)
+...| ....+.+|+.++|.|.+.+.|. ..+.|++++..+.. ....|.|.++ .+|+|.|+|.|.|..-
T Consensus 3 v~~~P-~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~-~~dsG~Y~C~a~~~~~ 70 (78)
T cd05752 3 VSLDP-PWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA-NNDSGEYRCQTQGSSL 70 (78)
T ss_pred EEeCC-CCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec-ccCCEEeEEECCCCcC
Confidence 44455 4677889999999999998775 46999999987632 1236888888 9999999999999766
Q ss_pred eeeEEEEC
Q psy16859 161 SDRAFVTV 168 (168)
Q Consensus 161 ~~~~~~~v 168 (168)
+....++|
T Consensus 71 S~~v~l~V 78 (78)
T cd05752 71 SDPVHLEV 78 (78)
T ss_pred CCCEEEeC
Confidence 66666654
No 129
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.54 E-value=1.3e-13 Score=73.26 Aligned_cols=62 Identities=26% Similarity=0.472 Sum_probs=47.9
Q ss_pred CCCceEEEEECCEecCC-CCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceee-EEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPK-SSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTE-TFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v 66 (168)
+|.|+|.|+|++.++.. ...++.... . .+|.|.+++.+|+|.|+|.+.|..|... ..+.|.|
T Consensus 10 ~P~p~v~W~k~~~~~~~~~~~~~~~~~--~--g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 10 NPDPEITWFKDFLPVDTTSNGRIKQLR--S--GALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred ecCCEEEEEECCEECccCCCCCEEEcC--C--cEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 58999999999998842 334554432 2 2699999999999999999999998754 3666665
No 130
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.54 E-value=3.7e-13 Score=73.49 Aligned_cols=79 Identities=24% Similarity=0.402 Sum_probs=62.0
Q ss_pred eEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEE-ecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEEC
Q psy16859 90 MSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTE-TVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168 (168)
Q Consensus 90 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~v 168 (168)
+.+..|..+.|.|.+.+.|.+.+.|++++..+......... .......|.|.++..+|.|.|.|.+.|..|..+.++.|
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 44668999999999999999999999998876644333221 12233578999999999999999999999988776654
No 131
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.54 E-value=1.5e-13 Score=75.03 Aligned_cols=75 Identities=24% Similarity=0.361 Sum_probs=60.4
Q ss_pred cceEeecCCeEEEEEEEcc-CCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEE
Q psy16859 88 TMMSVALGEDISFSFRLAG-SPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFV 166 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~ 166 (168)
..+.+..|+.++|.|.+.+ .|.+.+.|++++..+.... ....+.|.|..++.+|+|.|.|.+.|..|...+..
T Consensus 9 ~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~------~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~ 82 (85)
T cd05754 9 RSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA------MDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATA 82 (85)
T ss_pred CceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc------cccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEE
Confidence 5677889999999999875 6888999999876543211 11234799999999999999999999999998877
Q ss_pred EC
Q psy16859 167 TV 168 (168)
Q Consensus 167 ~v 168 (168)
.|
T Consensus 83 ~l 84 (85)
T cd05754 83 TL 84 (85)
T ss_pred EE
Confidence 64
No 132
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.54 E-value=1.8e-13 Score=75.77 Aligned_cols=65 Identities=31% Similarity=0.566 Sum_probs=51.1
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|.+.||+++..+. ...++......+...+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 28 ~P~p~i~W~k~~~~~~-~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~~ 92 (92)
T cd05891 28 NPDPEVIWFKNDQDIE-LSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVSV 92 (92)
T ss_pred eCCCeEEEEECCEECC-CCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEEC
Confidence 4889999999999884 4445554433233468999999999999999999999998877766653
No 133
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.54 E-value=7.3e-14 Score=76.10 Aligned_cols=73 Identities=18% Similarity=0.196 Sum_probs=54.0
Q ss_pred CCeEEEEEEEccC--CCCeEEEeeCCEeccCCCC-----cEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEE
Q psy16859 95 GEDISFSFRLAGS--PKPKVTWMKGIKDITTSSR-----TMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVT 167 (168)
Q Consensus 95 g~~~~l~C~~~~~--p~~~~~W~~~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 167 (168)
|+.+.|.|.+.+. |.+.+.|...+..+..... .........+.|.|.+++.+|+|.|+|.+.|..|....+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 6789999999998 7889999986654432111 00011112468999999999999999999999988876654
No 134
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.53 E-value=1.2e-13 Score=73.63 Aligned_cols=62 Identities=23% Similarity=0.422 Sum_probs=47.1
Q ss_pred CCCceEEEEECCEecCCCCC-c-eEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSP-R-FKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~-~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 63 (168)
+|.|++.|+|+++.+..... + +.+... ....+|.|.+++.+|+|.|+|.+.|..|....++.
T Consensus 11 ~P~p~~~W~k~g~~l~~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 11 YPSLRFKWFKDGKELNRKNKPRNIKIRNK-KKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CCCceEEEEcCCeeccccCCcceEEEEec-CceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 58999999999998853221 1 123333 44568999999999999999999999988766543
No 135
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.53 E-value=2.6e-13 Score=74.90 Aligned_cols=64 Identities=22% Similarity=0.289 Sum_probs=49.9
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|.+.|++++..+.. ......... ....+|.|.++..+|.|.|.|.+.|..|.....+.|.|
T Consensus 27 ~P~p~v~W~~~g~~~~~-~~~~~~~~~-~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~v 90 (90)
T cd04972 27 SPLPKVEWIIAGLIVIQ-TRTDTLETT-VDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVTV 90 (90)
T ss_pred cCCCeEEEEECCEEccC-CccEEEEec-CCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEeC
Confidence 59999999999998743 222222222 34568999999999999999999999999888777654
No 136
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.53 E-value=1.8e-13 Score=76.59 Aligned_cols=65 Identities=18% Similarity=0.338 Sum_probs=50.5
Q ss_pred CCCceEEEEECCEecCCC----CCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKS----SPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~----~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|++.|++++..+... ..++..... .....|.|.+++.+|+|.|+|.+.|..|....++.|.|
T Consensus 29 ~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 29 DPIPSITWRTSTRNISSEEKTLDGHIVVRSH-ARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred eCCCEEEEEECCccccCCccccCccEEEEcC-ccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEEC
Confidence 489999999998876422 123443333 44568999999999999999999999999888777764
No 137
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.52 E-value=2.2e-13 Score=74.36 Aligned_cols=68 Identities=16% Similarity=0.264 Sum_probs=50.4
Q ss_pred CCCc--eEEEEECCEecCCCC--CceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEEe
Q psy16859 1 YVKP--EVIWLRGNTPLPKSS--PRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVIN 68 (168)
Q Consensus 1 ~p~p--~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 68 (168)
+|.| ++.|++++..+.... .++..........+|.|.+++.+|+|.|+|.+.|..|....++.|.|..
T Consensus 12 ~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 83 (85)
T cd04970 12 DPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRG 83 (85)
T ss_pred CCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEEC
Confidence 3666 679999999884322 2332221112335899999999999999999999999988889999854
No 138
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.52 E-value=2e-13 Score=72.94 Aligned_cols=64 Identities=28% Similarity=0.466 Sum_probs=51.0
Q ss_pred CCCceEEEEECCEecCCC-CCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKS-SPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVI 67 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 67 (168)
.|.|.+.|+|++..+... ..++..... ...|.|.+++.+|.|.|+|.+.|..|.....+.|.|.
T Consensus 10 ~P~p~v~W~k~~~~l~~~~~~~~~~~~~---~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 10 IPLPRLTWLKNGMDITPKLSKQLTLIAN---GSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred cCCCEEEEEECCEECCCCCCccEEEeCC---CCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 489999999999987432 234443322 2379999999999999999999999999888888873
No 139
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.51 E-value=3e-13 Score=72.28 Aligned_cols=62 Identities=19% Similarity=0.402 Sum_probs=46.9
Q ss_pred CCCceEEEEECCEecCCC---CCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKS---SPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 63 (168)
.|.|++.||++++.+... ..++..... ....+|.|.+++.+|+|.|+|.+.|..|....++.
T Consensus 11 ~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 11 YPSLRFKWFKNGKEIGAKNKPDNKIKIRKK-KKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CCCCceEEEECCcccccCCCCCceEEEEeC-CcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 478899999999988422 223333333 44568999999999999999999999887765543
No 140
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.51 E-value=2.6e-13 Score=74.90 Aligned_cols=65 Identities=26% Similarity=0.445 Sum_probs=50.9
Q ss_pred CCCceEEEEECCEecC-------CCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEEec
Q psy16859 1 YVKPEVIWLRGNTPLP-------KSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINV 69 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~ 69 (168)
+|.|.+.|+|++..+. ....++.+... ..|.|.+++.+|+|.|.|.+.|..|.....+.|.|...
T Consensus 13 ~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~----~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~ 84 (90)
T cd05726 13 NPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQT----GDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTDV 84 (90)
T ss_pred cCCCEEEEEeCCCcceeecccCCCCCCeEEECCC----CeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEeec
Confidence 5899999999886431 12345554322 27999999999999999999999999988999999654
No 141
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.50 E-value=3.1e-13 Score=75.57 Aligned_cols=65 Identities=25% Similarity=0.443 Sum_probs=50.5
Q ss_pred CCCceEEEEECCEecCCC----CCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKS----SPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~----~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|.+.|++++..+... ..++.+... .....|.|.+++.+|+|.|+|.+.|..|....++.|.|
T Consensus 28 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 28 DPIPEITWRRATRNFSEGDKSLDGRIVVRGH-ARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred cCCCcEEEEECCcccCCCCccccceEEEeCC-ccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEeC
Confidence 589999999998766322 234444433 45578999999999999999999999999877776654
No 142
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.49 E-value=2.7e-12 Score=71.18 Aligned_cols=81 Identities=14% Similarity=0.202 Sum_probs=60.3
Q ss_pred cceEeecCCeEEEEEEEccCCCCeEEEeeCCEec--------cCCCCcEEEec-CCEEEEEEccCCCCCCeeEEEEEEc-
Q psy16859 88 TMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDI--------TTSSRTMTETV-NDYVRLTLKRATDDENGTYFIVARN- 157 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~--------~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n- 157 (168)
.++.+..|+++.|.|.+.+.|.+.+.|++.+..+ ....++..... .....|.|.++..+|.|.|+|.+..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~ 84 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM 84 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee
Confidence 4678899999999999999999999999866432 11223332222 2346899999999999999999998
Q ss_pred CCceeeEEEEC
Q psy16859 158 IYGSDRAFVTV 168 (168)
Q Consensus 158 ~~g~~~~~~~v 168 (168)
..+.+.+.++|
T Consensus 85 ~~~~~~~~~~v 95 (95)
T cd05882 85 PVRTAKATVTV 95 (95)
T ss_pred ccccEEEEEEC
Confidence 45566666654
No 143
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.49 E-value=2.6e-13 Score=72.96 Aligned_cols=58 Identities=19% Similarity=0.416 Sum_probs=46.2
Q ss_pred CceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 3 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
.|.+.|+|+|.+|. ...++.+... +|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 22 ~~~v~W~k~g~~l~-~~~~~~~~~~-----~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V 79 (79)
T cd04973 22 VQSINWTKDGVQLG-ENNRTRITGE-----EVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV 79 (79)
T ss_pred CceEEEeeCCcCCC-CCceEEEeCC-----EEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence 46899999999984 3456665433 7999999999999999999998887666665543
No 144
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.49 E-value=2.7e-13 Score=72.97 Aligned_cols=62 Identities=19% Similarity=0.366 Sum_probs=46.6
Q ss_pred EEEEEEEccCCCCeEEEeeCCEecc--------CCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCcee
Q psy16859 98 ISFSFRLAGSPKPKVTWMKGIKDIT--------TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSD 162 (168)
Q Consensus 98 ~~l~C~~~~~p~~~~~W~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 162 (168)
++|.|.+.|.|.|.+.|++++.... ...++.. ...++|.|.++..+|+|.|.|.|.|..|..
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~---~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 70 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQL---LSNGSLLIKHVLEEDSGYYLCKVSNDVGAD 70 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEE---ecCCeEEECcCCcccCEEEEEEEEeCCCCC
Confidence 4789999999999999998643211 1112221 122579999999999999999999999966
No 145
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.49 E-value=1.5e-12 Score=72.33 Aligned_cols=81 Identities=14% Similarity=0.252 Sum_probs=58.3
Q ss_pred cceEeecCCeEEEEEEEccCCCCeEEEeeCC--------EeccCCCCcEEEe-cCCEEEEEEccCCCCCCeeEEEEEEcC
Q psy16859 88 TMMSVALGEDISFSFRLAGSPKPKVTWMKGI--------KDITTSSRTMTET-VNDYVRLTLKRATDDENGTYFIVARNI 158 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~--------~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~ 158 (168)
..+.+.+|+++.|.|.+.+.|.+.+.|++.+ .......++.... .....+|.|.+++.+|+|.|+|.+.+.
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~ 84 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM 84 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence 4678999999999999999999999998522 1111223443322 234468999999999999999999974
Q ss_pred -CceeeEEEEC
Q psy16859 159 -YGSDRAFVTV 168 (168)
Q Consensus 159 -~g~~~~~~~v 168 (168)
.....+.+.|
T Consensus 85 ~~~~~~~~l~v 95 (95)
T cd07701 85 PVKTSKAYLTV 95 (95)
T ss_pred cCccEEEEEEC
Confidence 3344566554
No 146
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.49 E-value=5.4e-13 Score=72.51 Aligned_cols=66 Identities=24% Similarity=0.275 Sum_probs=48.8
Q ss_pred CCeEEEEEEEccCCCCeEEEeeCCEeccCCCCc--EE--EecCCEEEEEEccCCCCCCeeEEEEEEcCCc
Q psy16859 95 GEDISFSFRLAGSPKPKVTWMKGIKDITTSSRT--MT--ETVNDYVRLTLKRATDDENGTYFIVARNIYG 160 (168)
Q Consensus 95 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~--~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 160 (168)
|+.+.|.|.+.+.|.+.+.|+..+......... .. .......+|.|.+++.+|+|.|.|.+.|..+
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~ 70 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQ 70 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECcc
Confidence 678999999999999999999866533221110 11 1111246899999999999999999999765
No 147
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.49 E-value=4.4e-13 Score=73.85 Aligned_cols=60 Identities=22% Similarity=0.434 Sum_probs=44.8
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|.+.||||+.++.... .... . + ..|.|.++..+|+|.|+|.+.+..+.....+...+
T Consensus 27 ~~~p~i~Wyk~~~~i~~~~--~~~~-~-~--~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~t~ 86 (92)
T cd05757 27 NTLPPVQWYKDCKLLEGDR--KRFV-K-G--SKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTRTI 86 (92)
T ss_pred CCCCcEEEeECCEECCCCc--cEEe-c-C--CEEEEeeCChhhCEEEEEEEEecCCCEEEEEEEEE
Confidence 4789999999999985322 2222 2 2 27999999999999999999988776655444444
No 148
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.49 E-value=4.7e-13 Score=75.03 Aligned_cols=65 Identities=18% Similarity=0.420 Sum_probs=49.6
Q ss_pred CCCceEEEEEC--CEecCC----CCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRG--NTPLPK----SSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~--~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|.|.|+++ +..+.. .+.|+.+... .+..+|.|.+++.+|+|.|+|.+.|..|....++.|.|
T Consensus 28 ~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 28 EPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQ-HGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred CCCCeEEEEECCCCceeccCCcCcCceEEEeec-CCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEeC
Confidence 58999999994 444421 2346665544 45568999999999999999999999998877776654
No 149
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.49 E-value=9e-13 Score=75.16 Aligned_cols=68 Identities=18% Similarity=0.329 Sum_probs=53.2
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecC---CCEEEEEEcCCC-CCCCeEEEEEEEcccceeeEEEEEEEEe
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDS---NNLHTLILSGVT-AEEAGKYTCRVSNEYGYTETFARVDVIN 68 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 68 (168)
+|.|.+.|++++..+.....++...... .....|.|.++. .+|.|.|+|.+.|..|.....+.|.+..
T Consensus 35 ~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~ 106 (109)
T cd05773 35 VPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVSTS 106 (109)
T ss_pred cCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEecC
Confidence 5899999999999985445566533221 123589999997 6999999999999999998888888853
No 150
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.48 E-value=4e-13 Score=74.01 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=58.4
Q ss_pred ceEeecCCeEEEEEEEcc-----CCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceee
Q psy16859 89 MMSVALGEDISFSFRLAG-----SPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDR 163 (168)
Q Consensus 89 ~~~~~~g~~~~l~C~~~~-----~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~ 163 (168)
.+.+..|..+.|.|...+ .|.|.+.|++++..+....... . ....|.|.++..+|+|.|+|.+.|..+...
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~-~---~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~ 79 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF-V---KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQ 79 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE-e---cCCEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence 456788999999998753 2577899999999887544322 1 335899999999999999999999988776
Q ss_pred EEE
Q psy16859 164 AFV 166 (168)
Q Consensus 164 ~~~ 166 (168)
..+
T Consensus 80 ~~~ 82 (92)
T cd05757 80 YNV 82 (92)
T ss_pred EEE
Confidence 554
No 151
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.48 E-value=9.8e-13 Score=72.81 Aligned_cols=59 Identities=25% Similarity=0.493 Sum_probs=45.6
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCC-CCCCeEEEEEEEcccceeeE-EEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVT-AEEAGKYTCRVSNEYGYTET-FARV 64 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~-~~~l 64 (168)
+|.|++.|+|++..+.....++.+... .|.|.++. .+|+|.|.|.+.|..|...+ .+.|
T Consensus 31 ~P~P~i~W~k~~~~i~~~~~~~~~~~g-----~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 31 NPFPIYKWRKNNLDIDLTNDRYSMVGG-----NLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred CCCCEEEEEECCEEccCCCCeEEEECC-----EEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 599999999999988544455554432 79999885 69999999999999988755 4443
No 152
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.47 E-value=3.7e-13 Score=74.58 Aligned_cols=62 Identities=19% Similarity=0.314 Sum_probs=46.3
Q ss_pred CCceEEEEECCEecCCC-CCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 2 VKPEVIWLRGNTPLPKS-SPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 2 p~p~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
|.|+|.|||++..+... ..+.++... + ..|.|.++..+|+|.|.|.+.|..|.....+.|.|
T Consensus 32 p~~~v~Wyk~~~~~~~~~~~~~r~~~~-~--~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L~v 94 (94)
T cd05756 32 PGLNLTWYKSDGKTPIPTEERSRMHQQ-K--DLLWFLPAALEDSGLYTCVVRNSTYCMKVSISLTV 94 (94)
T ss_pred CCceEEEEEcCCCCcccccccceeeec-C--CeEEEccCCcccCeEEEEEEcCCCccEEEEEEEEC
Confidence 78999999998765321 112222222 2 37999999999999999999999998888777764
No 153
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.47 E-value=9e-13 Score=72.43 Aligned_cols=60 Identities=22% Similarity=0.453 Sum_probs=47.4
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|.+.|++++..+.. ..+... . . ..|.|.+++.+|+|.|.|.+.|..|.....+.|.|
T Consensus 28 ~P~p~v~W~k~~~~~~~-~~~~~~--~-~--~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 87 (88)
T cd04968 28 NPVPQIKWRKVDGSMPS-SAEISM--S-G--AVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYV 87 (88)
T ss_pred eCCCEEEEEECCCcCCC-ccEEEE--e-C--CEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEE
Confidence 58899999998876632 222221 1 2 38999999999999999999999999888888876
No 154
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.46 E-value=7.4e-13 Score=72.50 Aligned_cols=61 Identities=26% Similarity=0.558 Sum_probs=47.2
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeE-EEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET-FARVD 65 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~ 65 (168)
+|.|++.|++++..+.....++..... .+|.|.+++.+|+|.|+|.+.|..|.... .+.|.
T Consensus 24 ~p~p~i~W~k~g~~~~~~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 85 (86)
T cd05724 24 HPEPTVSWRKDGQPLNLDNERVRIVDD----GNLLIAEARKSDEGTYKCVATNMVGERESAAARLS 85 (86)
T ss_pred CCCCEEEEEECCEECCCCCCCEEEccC----CEEEEeECCcccCEEEEEEEEeccCceeeeeEEEE
Confidence 488999999999988554455554432 37999999999999999999999887644 44443
No 155
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.45 E-value=1.1e-12 Score=68.54 Aligned_cols=56 Identities=29% Similarity=0.485 Sum_probs=42.7
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARV 64 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 64 (168)
.|.|+|.|+|++.++.. ..++.. +...|.|.++ .|+|.|+|.+.|..|....++.|
T Consensus 13 ~P~P~v~W~k~g~~l~~-~~~~~~-----~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 13 APMPYVKWMKGGEELTK-EDEMPV-----GRNVLELTNI--YESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred cCCCEEEEEECCEECCC-ccceec-----CccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence 59999999999998843 333321 1237999987 47999999999999988777655
No 156
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.45 E-value=5.1e-13 Score=72.47 Aligned_cols=62 Identities=35% Similarity=0.621 Sum_probs=47.1
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|.+.|++++..+.... ... .. ....+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 21 ~p~p~i~W~k~~~~~~~~~-~~~--~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 21 NPRPDITWLKDNKPLTPTE-IGE--SR-KKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred eCCCcEEEEECCcCCcCCc-cce--ec-CceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 5889999999998874322 111 11 33458999999999999999999999998777666653
No 157
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.43 E-value=1.2e-12 Score=69.61 Aligned_cols=61 Identities=21% Similarity=0.389 Sum_probs=46.5
Q ss_pred CCCceEEEEE-CCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLR-GNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
.|.|++.|++ ++..+. ...+...... .+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 13 ~P~p~v~W~~~~~~~~~-~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 13 DPEPAIHWISPDGKLIS-NSSRTLVYDN----GTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred cCCCEEEEEeCCCEEec-CCCeEEEecC----CEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 4899999997 566663 3344443322 27999999999999999999999998877776654
No 158
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.43 E-value=1.3e-12 Score=72.09 Aligned_cols=66 Identities=26% Similarity=0.465 Sum_probs=46.8
Q ss_pred CCCceEEEEECC----EecCCCC-CceEEEec------CCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGN----TPLPKSS-PRFKYIED------SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~----~~~~~~~-~~~~~~~~------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
.|.|+|+|+|++ ..+.... ........ ......|.|.+++.+|+|.|+|.+.|..|....++.|.|
T Consensus 13 ~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V 89 (90)
T cd04974 13 DAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTV 89 (90)
T ss_pred CCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCcccCCEEEEe
Confidence 599999999963 3332221 11111110 022347999999999999999999999999988888887
No 159
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.43 E-value=3.4e-12 Score=68.16 Aligned_cols=57 Identities=21% Similarity=0.388 Sum_probs=42.1
Q ss_pred CCCceEEEEECCEecC-CCCCceEEEecCCCEEEEEEcCCC----CCCCeEEEEEEEcccceeeE
Q psy16859 1 YVKPEVIWLRGNTPLP-KSSPRFKYIEDSNNLHTLILSGVT----AEEAGKYTCRVSNEYGYTET 60 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~----~~d~G~Y~C~~~~~~~~~~~ 60 (168)
+|.|+|+|+|++..+. ..+.++.+... .+ +|.|..+. .+|+|.|+|.+.|..|...+
T Consensus 10 ~P~P~v~W~k~g~~~~~~~~~~~~~~~~-~~--~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 10 NPVPTFQWTRNGKFFNVAKDPRVSMRRR-SG--TLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred cCCCEEEEEECCEEccCcCCCcEEEeCC-Cc--eEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 6999999999998764 23445554433 33 78887764 24799999999999987654
No 160
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.43 E-value=3.2e-12 Score=70.44 Aligned_cols=63 Identities=19% Similarity=0.358 Sum_probs=48.1
Q ss_pred CCCceEEEEE-CCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceee-EEEEEEE
Q psy16859 1 YVKPEVIWLR-GNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTE-TFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v 66 (168)
+|. .+.|++ ++.++ ....|+.+... +...+|.|.++..+|+|.|+|.+.|..|... .++.|.+
T Consensus 27 ~P~-~v~W~k~~g~~~-~~~~r~~~~~~-g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~ 91 (92)
T cd05866 27 EPE-SIDWYNPQGEKI-VSSQRVVVQKE-GVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI 91 (92)
T ss_pred eCC-eEEEEeCCCeEe-cCCCCEEEEeC-CCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence 366 899998 46666 34567776655 5556899999999999999999999988764 4555554
No 161
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.41 E-value=4.6e-12 Score=69.84 Aligned_cols=59 Identities=29% Similarity=0.523 Sum_probs=46.0
Q ss_pred CceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeE-EEEEEE
Q psy16859 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET-FARVDV 66 (168)
Q Consensus 3 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~v 66 (168)
.|.|.|++++..+.. .++.+... + .+|.|.+++.+|+|.|.|.+.|..|...+ .+.|.|
T Consensus 31 ~p~i~W~kng~~l~~--~~~~~~~~-~--~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 31 ATYIWWVNNGSLLVP--PRLQLSND-N--RTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred CCEEEEEECCEECCC--CCEEEeCC-C--CEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 689999999998742 34444433 2 37999999999999999999999987655 566665
No 162
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.41 E-value=2.5e-12 Score=70.83 Aligned_cols=77 Identities=10% Similarity=0.116 Sum_probs=56.0
Q ss_pred cceEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCC--CcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCC-ceeeE
Q psy16859 88 TMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSS--RTMTETVNDYVRLTLKRATDDENGTYFIVARNIY-GSDRA 164 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~-g~~~~ 164 (168)
..+.+..|+.+.|.|.+.+ |.+.+.|++++..+.... ........ ..|.|.+++.+|+|.|.|.+.+.. +...+
T Consensus 4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~ 80 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTE--DGLLIRSVSPADAGVYTCQSVEHGFKQTLA 80 (89)
T ss_pred eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcC--CCEEEccCCHHHCEEEEEEEecCccceeEe
Confidence 4567889999999999876 888999999987665432 11122222 358899999999999999999764 44444
Q ss_pred EEE
Q psy16859 165 FVT 167 (168)
Q Consensus 165 ~~~ 167 (168)
.++
T Consensus 81 ~~~ 83 (89)
T cd04979 81 TYS 83 (89)
T ss_pred EEE
Confidence 443
No 163
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.41 E-value=2.9e-12 Score=70.68 Aligned_cols=66 Identities=27% Similarity=0.523 Sum_probs=47.4
Q ss_pred CCCceEEEEEC----CEecCCCC-CceEEEec------CCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRG----NTPLPKSS-PRFKYIED------SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~----~~~~~~~~-~~~~~~~~------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|+|.|+++ +..+.... ........ .....+|.|.+++.+|+|.|+|.+.|..|....++.|.|
T Consensus 13 ~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 89 (90)
T cd05858 13 DAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTV 89 (90)
T ss_pred CCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEE
Confidence 59999999984 44442221 12222111 022358999999999999999999999999888888877
No 164
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.41 E-value=1.6e-12 Score=71.62 Aligned_cols=75 Identities=9% Similarity=0.063 Sum_probs=55.5
Q ss_pred cceEeecCCeEEEEEEE-ccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCcee
Q psy16859 88 TMMSVALGEDISFSFRL-AGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSD 162 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 162 (168)
..+.+.+|+.+.|.|.. .|.|.+.+.|++++.................+.|.+.+++.+|+|.|+|.|.|..+..
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 45668899999999975 4789999999998765321111111222334689999999999999999999986554
No 165
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.40 E-value=9.7e-12 Score=67.50 Aligned_cols=68 Identities=16% Similarity=0.182 Sum_probs=53.7
Q ss_pred cceEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCC
Q psy16859 88 TMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIY 159 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 159 (168)
....+..|+++.|.|.+.+ +.+.+.|++++..+......... .. ..|.|.+++.+|+|.|+|.+.+..
T Consensus 4 ~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~-~~--~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 4 RQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLL-YR--DGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred ceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEE-EC--CcEEEeCCCHHHCEEEEEEEEecc
Confidence 4677889999999999854 67899999999988765321112 12 369999999999999999999864
No 166
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.40 E-value=3.1e-12 Score=68.42 Aligned_cols=57 Identities=28% Similarity=0.547 Sum_probs=42.0
Q ss_pred CCCceEEEEECCEecCCC-CCceEEEecCCCEEEEEEcCCC----CCCCeEEEEEEEcccceeeE
Q psy16859 1 YVKPEVIWLRGNTPLPKS-SPRFKYIEDSNNLHTLILSGVT----AEEAGKYTCRVSNEYGYTET 60 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~----~~d~G~Y~C~~~~~~~~~~~ 60 (168)
+|.|+++|+|++..+... ..++..... .+ +|.|.++. .+|+|.|.|.+.|..|...+
T Consensus 10 ~P~P~v~W~k~g~~l~~~~~~~~~~~~~-~g--~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 10 NPPPTFSWTRNGTHFDPEKDPRVTMKPD-SG--TLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred cCCCeEEEEECCeECCCCCCCCEEEeCC-CC--EEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 599999999999988432 334444332 33 78888775 37899999999999987644
No 167
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.39 E-value=4.3e-12 Score=69.93 Aligned_cols=54 Identities=20% Similarity=0.389 Sum_probs=41.1
Q ss_pred CCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEccccee
Q psy16859 2 VKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58 (168)
Q Consensus 2 p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 58 (168)
+.|++.||||++++.....++..... ...|.|.++..+|+|.|+|.+.+..+..
T Consensus 28 ~~~~v~WYKd~~~l~~~~~~~~~~~~---~~~L~I~~v~~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 28 TDVELQWYKDSVLLDKDNEKFYSLKG---STYLHIIDVSLNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred CCCcEEEccCCEECcCCCcceEecCC---CCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence 57899999999998544444443222 2269999999999999999999876443
No 168
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.39 E-value=6.6e-12 Score=69.72 Aligned_cols=55 Identities=27% Similarity=0.573 Sum_probs=41.9
Q ss_pred CCCceEEEEECCEecCCC-CCceEEEecCCCEEEEEEcCCC-CCCCeEEEEEEEcccceeeE
Q psy16859 1 YVKPEVIWLRGNTPLPKS-SPRFKYIEDSNNLHTLILSGVT-AEEAGKYTCRVSNEYGYTET 60 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~ 60 (168)
+|.|+|.|+|++..+... ..++.... + +|.|.++. .+|+|.|+|.+.|..|...+
T Consensus 31 ~P~P~i~W~k~g~~l~~~~~~~~~~~~---g--~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S 87 (94)
T cd05848 31 NPVPTYRWLRNGTEIDTESDYRYSLID---G--NLIISNPSEVKDSGRYQCLATNSIGSILS 87 (94)
T ss_pred cCCCEEEEEECCeECccCCCceEEeeC---C--eEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence 589999999999988432 22333322 2 78898875 69999999999999987754
No 169
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.39 E-value=1.1e-11 Score=68.91 Aligned_cols=59 Identities=20% Similarity=0.384 Sum_probs=44.2
Q ss_pred CCCceEEEEECCEecCCC-CCceEEEecCCCEEEEEEcCCC-CCCCeEEEEEEEcccceeeE-EEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKS-SPRFKYIEDSNNLHTLILSGVT-AEEAGKYTCRVSNEYGYTET-FARV 64 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~-~~~l 64 (168)
+|.|+++|++++..+... ..++.+... +|.|.++. .+|+|.|+|.+.|..|...+ .+.|
T Consensus 31 ~P~p~i~W~~~g~~l~~~~~~~~~~~~g-----~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 31 SPPATYRWKMNGTEIKFAPESRYTLVAG-----NLVINNPQKARDAGSYQCLAINRCGTVVSREANL 92 (94)
T ss_pred CCCCEEEEEECCEECccCCCceEEEECC-----eEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence 589999999999988532 334444332 68898865 59999999999999997755 4433
No 170
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.39 E-value=5.5e-12 Score=64.57 Aligned_cols=63 Identities=27% Similarity=0.479 Sum_probs=50.2
Q ss_pred cCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCc
Q psy16859 94 LGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG 160 (168)
Q Consensus 94 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 160 (168)
+|+.+.|.|.+.+.+.+.+.|++++..+.. ... .......|.|.++...|.|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~--~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNR--LSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC--CCE--EecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 478899999988888899999998887762 111 122335799999999999999999999765
No 171
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.38 E-value=5e-12 Score=68.02 Aligned_cols=61 Identities=23% Similarity=0.490 Sum_probs=43.0
Q ss_pred CCCceEEEEECCEecCC-------CCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceee-EEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPK-------SSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTE-TFARVD 65 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~-------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~l~ 65 (168)
+|.|.+.|++++..... ...++..... .+|.|.++..+|+|.|.|.+.|..|... ....|+
T Consensus 10 ~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~----~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 78 (79)
T cd05734 10 YPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSN----GSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT 78 (79)
T ss_pred eCCCEEEEEECCCccccccccccccCCCEEEecC----CeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence 69999999996432111 2334443322 3799999999999999999999988763 344444
No 172
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.38 E-value=1.5e-11 Score=65.72 Aligned_cols=57 Identities=23% Similarity=0.438 Sum_probs=40.7
Q ss_pred CCCceEEEEECCEecCC-CCCceEEEecCCCEEEEEEcCCCC----CCCeEEEEEEEcccceeeE
Q psy16859 1 YVKPEVIWLRGNTPLPK-SSPRFKYIEDSNNLHTLILSGVTA----EEAGKYTCRVSNEYGYTET 60 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~~ 60 (168)
.|.|+|+|+|++.++.. ...++..... ++ +|.|..+.. .|+|.|+|.+.|..|...+
T Consensus 10 ~P~P~i~W~k~g~~l~~~~~~~~~~~~~-~g--~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 10 KPPPSFSWTRNGTHFDIDKDPKVTMKPN-TG--TLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred cCCCeEEEEECCeECCCcCCCCEEEeCC-Cc--eEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 49999999999998742 2334443322 33 677766654 4789999999999987654
No 173
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.37 E-value=8.4e-12 Score=68.84 Aligned_cols=74 Identities=9% Similarity=0.096 Sum_probs=54.2
Q ss_pred eEeecCCeEEEEEEEccCCCCeEEEeeCCEec-c-------------CCCCcEEEe---cCCEEEEEEccCCCCCCeeEE
Q psy16859 90 MSVALGEDISFSFRLAGSPKPKVTWMKGIKDI-T-------------TSSRTMTET---VNDYVRLTLKRATDDENGTYF 152 (168)
Q Consensus 90 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~-~-------------~~~~~~~~~---~~~~~~l~i~~~~~~d~g~y~ 152 (168)
+.+..|+.++|.|...+.+.+.+.|++++... . ...++.... .....+|.|.+++.+|+|.|+
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 45778999999999998899999999654221 1 111222222 223467999999999999999
Q ss_pred EEEEcCCceee
Q psy16859 153 IVARNIYGSDR 163 (168)
Q Consensus 153 C~~~n~~g~~~ 163 (168)
|.+.|..+...
T Consensus 82 C~v~~~~~~~~ 92 (94)
T cd07690 82 CEVEDKKEEVE 92 (94)
T ss_pred EEECCccceEE
Confidence 99999887654
No 174
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.37 E-value=7.4e-12 Score=67.95 Aligned_cols=49 Identities=20% Similarity=0.438 Sum_probs=39.8
Q ss_pred CCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEccc
Q psy16859 2 VKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEY 55 (168)
Q Consensus 2 p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 55 (168)
|.|+|.|++|+.+|.....++.+... .|.|.+++.+|+|.|+|.+.+..
T Consensus 23 ~~~~i~W~~ng~~i~~~~~r~~~~~~-----~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 23 NLARVVWKFDGKVLTPESAKYLLYRD-----GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred CCCeEEEEECCEECCCCCceEEEECC-----cEEEeCCCHHHCEEEEEEEEecc
Confidence 56899999999999654456655433 69999999999999999998753
No 175
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.37 E-value=3.3e-11 Score=67.14 Aligned_cols=81 Identities=14% Similarity=0.254 Sum_probs=57.4
Q ss_pred cceEeecCCeEEEEEEEccCCCCeEEEeeCCEe-c-------cCCCCcEEEe-cCCEEEEEEccCCCCCCeeEEEEEEcC
Q psy16859 88 TMMSVALGEDISFSFRLAGSPKPKVTWMKGIKD-I-------TTSSRTMTET-VNDYVRLTLKRATDDENGTYFIVARNI 158 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~-~-------~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~ 158 (168)
..+.+.+|+.++|.|.+.+.+.+.+.|++.+.. + ....++.... ......|.|.+++.+|+|.|+|.+.+.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 84 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM 84 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence 456788999999999998888889999852211 0 0112333211 223468999999999999999999985
Q ss_pred C-ceeeEEEEC
Q psy16859 159 Y-GSDRAFVTV 168 (168)
Q Consensus 159 ~-g~~~~~~~v 168 (168)
. +.+.+.++|
T Consensus 85 ~~~~~~~~~~v 95 (95)
T cd05717 85 PVQTAKATVTV 95 (95)
T ss_pred CCceEEEEEEC
Confidence 4 555666664
No 176
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.36 E-value=3.3e-12 Score=69.11 Aligned_cols=62 Identities=21% Similarity=0.379 Sum_probs=44.3
Q ss_pred CCCceEEEEECCE---e--cCCCC--CceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNT---P--LPKSS--PRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~---~--~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|.+.|+|++. . +.... .++.. ....+|.|.+++.+|+|.|.|.+.|..|.....+.|.|
T Consensus 13 ~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~----~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 81 (81)
T cd05765 13 RPPPEITWEKQVHGKENLIMRPNHVRGNVVV----TNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLSV 81 (81)
T ss_pred cCCCcEEEEecCCCCcceeecCCcccCCEEE----ccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEeC
Confidence 5899999999742 1 11111 11111 12247999999999999999999999999888877764
No 177
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.36 E-value=4.1e-11 Score=66.15 Aligned_cols=81 Identities=26% Similarity=0.382 Sum_probs=64.4
Q ss_pred cceEeecCCeEEEEEEEccCCCCe-EEEeeCCEeccCCCCcEEEecC-----CEEEEEEccCCCCCCeeEEEEEEcCCce
Q psy16859 88 TMMSVALGEDISFSFRLAGSPKPK-VTWMKGIKDITTSSRTMTETVN-----DYVRLTLKRATDDENGTYFIVARNIYGS 161 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 161 (168)
..+.+.+|+.+.|.|.+...|.|. +.|.+++..+............ -.+.|.+.++..++.|.|+|.|.|+.++
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 467789999999999999999998 9999988765433332222221 1268999999999999999999999999
Q ss_pred eeEEEEC
Q psy16859 162 DRAFVTV 168 (168)
Q Consensus 162 ~~~~~~v 168 (168)
.+..|.|
T Consensus 91 ~s~tF~l 97 (101)
T cd05860 91 ASVTFNV 97 (101)
T ss_pred EEEEEEE
Confidence 9887754
No 178
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.34 E-value=2.8e-11 Score=65.97 Aligned_cols=65 Identities=35% Similarity=0.626 Sum_probs=48.2
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+|.|.+.|++++..+.. ...+...........|.|.++..+|+|.|.|.+.|..|....++.|.|
T Consensus 21 ~p~~~v~W~k~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~v 85 (85)
T cd05729 21 NPRPTITWLKDGKPFKK-EHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVDV 85 (85)
T ss_pred CCCCeEEEEECCEECcc-cCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEeC
Confidence 58899999999988742 223332222234467999999999999999999998888766666653
No 179
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.32 E-value=2.8e-11 Score=65.56 Aligned_cols=65 Identities=20% Similarity=0.113 Sum_probs=52.0
Q ss_pred eEeecCCeEEEEEEEcc-CCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCcee
Q psy16859 90 MSVALGEDISFSFRLAG-SPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSD 162 (168)
Q Consensus 90 ~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 162 (168)
..+.+|+.++|.|.+.+ .+.+.+.|++++..+.. ......|.|.+++.+|+|.|+|.+.+..|..
T Consensus 9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~--------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~ 74 (83)
T cd05753 9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY--------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDY 74 (83)
T ss_pred ceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc--------cCCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence 35789999999999864 55678999999876542 1123479999999999999999999988644
No 180
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.32 E-value=1.9e-10 Score=62.46 Aligned_cols=79 Identities=33% Similarity=0.479 Sum_probs=62.3
Q ss_pred ceEeecCCeEEEEEEEccCCCCeEEEeeC-CEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEE
Q psy16859 89 MMSVALGEDISFSFRLAGSPKPKVTWMKG-IKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVT 167 (168)
Q Consensus 89 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 167 (168)
.+.+..|+.+.|.|.+.+.+.+.+.|+++ +..+....+...........|.|.++...|.|.|.|.+.+..+.....+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 45677999999999999888889999997 77665444444444443568999999999999999999988887665443
No 181
>smart00409 IG Immunoglobulin.
Probab=99.32 E-value=1.9e-10 Score=62.46 Aligned_cols=79 Identities=33% Similarity=0.479 Sum_probs=62.3
Q ss_pred ceEeecCCeEEEEEEEccCCCCeEEEeeC-CEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEEE
Q psy16859 89 MMSVALGEDISFSFRLAGSPKPKVTWMKG-IKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVT 167 (168)
Q Consensus 89 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 167 (168)
.+.+..|+.+.|.|.+.+.+.+.+.|+++ +..+....+...........|.|.++...|.|.|.|.+.+..+.....+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 45677999999999999888889999997 77665444444444443568999999999999999999988887665443
No 182
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.31 E-value=5.2e-11 Score=66.93 Aligned_cols=65 Identities=22% Similarity=0.402 Sum_probs=43.1
Q ss_pred CCCceEEEEECCEecCCC----CCceEEEecCCCEEEEEE--cCCCCCCCeEEEEEEEcccce-eeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKS----SPRFKYIEDSNNLHTLIL--SGVTAEEAGKYTCRVSNEYGY-TETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~----~~~~~~~~~~~~~~~l~i--~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v 66 (168)
+|.|.+.|+|++..+... ..+...... +....+.+ ..++.+|+|.|+|.+.|..|. ....+.|.|
T Consensus 28 ~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 28 RPTPTIQWLKNGQPLETDKDDPRSHRIVLPS-GSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred CCCCEEEEEECCEECccccCCCCcceEEecC-CcEEEEEeeccCCCcCcCEEEEEEEEccccceecceEEEEe
Confidence 589999999999988531 112222222 32233333 334789999999999999998 444666665
No 183
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.29 E-value=3.6e-10 Score=62.38 Aligned_cols=80 Identities=16% Similarity=0.186 Sum_probs=58.1
Q ss_pred cceEeecCCeEEEEEEEccCCCCeEEEeeCCEec--------cCCCCcEEEe-cCCEEEEEEccCCCCCCeeEEEEEEcC
Q psy16859 88 TMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDI--------TTSSRTMTET-VNDYVRLTLKRATDDENGTYFIVARNI 158 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~--------~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~ 158 (168)
.++.+.+|++++|.|.+.+.....+.|++-+..+ ...+++.... .....+|.|..++.+|.|.|.|.+...
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 5678899999999999998766778888654322 2344555443 344578999999999999999999863
Q ss_pred -CceeeEEEE
Q psy16859 159 -YGSDRAFVT 167 (168)
Q Consensus 159 -~g~~~~~~~ 167 (168)
.-....+++
T Consensus 85 p~~~~~~~~~ 94 (95)
T cd05881 85 PPQEAYTTIT 94 (95)
T ss_pred cCeEEEEEEE
Confidence 334445544
No 184
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.29 E-value=4.8e-11 Score=65.95 Aligned_cols=55 Identities=27% Similarity=0.538 Sum_probs=41.8
Q ss_pred CCCceEEEEECCEecCC-CCCceEEEecCCCEEEEEEcCCC-CCCCeEEEEEEEcccceeeE
Q psy16859 1 YVKPEVIWLRGNTPLPK-SSPRFKYIEDSNNLHTLILSGVT-AEEAGKYTCRVSNEYGYTET 60 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~ 60 (168)
+|.|++.|++++..+.. ...++..... .|.|.++. .+|+|.|+|.+.|..|...+
T Consensus 31 ~p~p~i~W~k~~~~l~~~~~~~~~~~~~-----~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 31 SPPPTYRWLMNGTEIDDEPDSRYSLVGG-----NLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred cCCCEEEEEECCEECCCCCCCCEEEECC-----EEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 48999999999998832 2344443322 78898876 49999999999999887644
No 185
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.29 E-value=5.3e-11 Score=65.84 Aligned_cols=61 Identities=18% Similarity=0.431 Sum_probs=43.4
Q ss_pred ceEEEEE-CCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccce-eeEEEEEE
Q psy16859 4 PEVIWLR-GNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGY-TETFARVD 65 (168)
Q Consensus 4 p~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~ 65 (168)
+.+.|++ ++..+.. ..++..........+|+|.+++.+|+|.|+|.+.|..|. ...++.|.
T Consensus 29 ~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~ 91 (92)
T cd04977 29 KDISWFSPNGEKLVT-QQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLK 91 (92)
T ss_pred CeEEEECCCCCEecc-CCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEE
Confidence 5999998 5665533 345544433245678999999999999999999998654 34455554
No 186
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.28 E-value=3.8e-11 Score=61.89 Aligned_cols=61 Identities=30% Similarity=0.503 Sum_probs=45.6
Q ss_pred CCeEEEEEEE-ccCCCCeEEEeeCCEeccCCCCcEEEecCCE--EEEEEccCCCCCCeeEEEEE
Q psy16859 95 GEDISFSFRL-AGSPKPKVTWMKGIKDITTSSRTMTETVNDY--VRLTLKRATDDENGTYFIVA 155 (168)
Q Consensus 95 g~~~~l~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~ 155 (168)
|+.+.|.|.+ .+.+...+.|++++................. ..|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 6889999999 6677889999998876554333332222222 13999999999999999986
No 187
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.27 E-value=1.1e-10 Score=65.41 Aligned_cols=64 Identities=22% Similarity=0.413 Sum_probs=48.7
Q ss_pred CCCc-eEEEEECCEecCCC-CCceEEEec---CCCEEEEEEcCCCC-CCCeEEEEEEEcccceeeEEEEE
Q psy16859 1 YVKP-EVIWLRGNTPLPKS-SPRFKYIED---SNNLHTLILSGVTA-EEAGKYTCRVSNEYGYTETFARV 64 (168)
Q Consensus 1 ~p~p-~v~W~~~~~~~~~~-~~~~~~~~~---~~~~~~l~i~~~~~-~d~G~Y~C~~~~~~~~~~~~~~l 64 (168)
.|.| .|.|++++..+... ..++.+... .....+|.|.++.. +|.|.|.|.+.|..|.....+.|
T Consensus 28 ~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 28 TPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred cCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcccEEEEe
Confidence 4888 69999999988543 356765543 12345899999999 55899999999999987776654
No 188
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.27 E-value=7.5e-11 Score=65.70 Aligned_cols=61 Identities=23% Similarity=0.446 Sum_probs=42.5
Q ss_pred CCCceEEEEECCEecCCCC-CceEEEecCCCEEEEEEcCC-----CCCCCeEEEEEEEcc-cceeeE-EEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSS-PRFKYIEDSNNLHTLILSGV-----TAEEAGKYTCRVSNE-YGYTET-FARVD 65 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~-----~~~d~G~Y~C~~~~~-~~~~~~-~~~l~ 65 (168)
.|.|.+.|+|++..+.... .+...... + +|.|.++ +.+|+|.|.|.+.|. .|...+ .+.|.
T Consensus 26 ~P~p~i~W~k~g~~l~~~~~~~~~~~~~--~--~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~ 94 (95)
T cd05722 26 EPPPKIEWKKDGVLLNLVSDERRQQLPN--G--SLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLT 94 (95)
T ss_pred CCCCEEEEEECCeECccccCcceEEccC--C--eEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEe
Confidence 4899999999999885322 22333322 2 4666555 689999999999999 887643 45554
No 189
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.26 E-value=3.6e-11 Score=65.43 Aligned_cols=65 Identities=18% Similarity=0.269 Sum_probs=46.1
Q ss_pred CCceEEEEECCEecCCCC--C-ceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 2 VKPEVIWLRGNTPLPKSS--P-RFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 2 p~p~v~W~~~~~~~~~~~--~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
|.|.+.|+++++.+.... . +...........+|+|.+++.+|+|.|+|.+.|..+....++.|.|
T Consensus 16 ~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v 83 (84)
T cd05742 16 EGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVNI 83 (84)
T ss_pred ccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence 789999999886552111 0 1111111123468999999999999999999999888877777765
No 190
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.26 E-value=6.3e-11 Score=65.33 Aligned_cols=76 Identities=7% Similarity=0.062 Sum_probs=55.5
Q ss_pred eEeecCCeEEEEEEE-c----cCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeE
Q psy16859 90 MSVALGEDISFSFRL-A----GSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRA 164 (168)
Q Consensus 90 ~~~~~g~~~~l~C~~-~----~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~ 164 (168)
+.+..|....|.|.- . ..+.+.+.|++++..+......... ..+...|.|.++..+|+|.|+|.+.+..|....
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~-~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y 83 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYS-LKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKY 83 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEe-cCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEE
Confidence 456788899999973 2 2466789999999987644322211 112236999999999999999999999877654
Q ss_pred EE
Q psy16859 165 FV 166 (168)
Q Consensus 165 ~~ 166 (168)
.+
T Consensus 84 ~v 85 (95)
T cd05897 84 NI 85 (95)
T ss_pred EE
Confidence 43
No 191
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.25 E-value=7.8e-11 Score=64.27 Aligned_cols=72 Identities=18% Similarity=0.145 Sum_probs=49.9
Q ss_pred CCeEEEEEEEccCC--CCeEEEeeCCEeccCC---C--C-cEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeEEE
Q psy16859 95 GEDISFSFRLAGSP--KPKVTWMKGIKDITTS---S--R-TMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFV 166 (168)
Q Consensus 95 g~~~~l~C~~~~~p--~~~~~W~~~~~~~~~~---~--~-~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~ 166 (168)
|+++.|.|.+.+.+ ...+.|...+...... . + .........+.|.|.+++..|+|.|+|.|.|..|......
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 67899999998755 4468998766432111 1 0 0001112346899999999999999999999988766444
No 192
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.25 E-value=8.3e-11 Score=64.71 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=55.3
Q ss_pred cceEeecCCeEEEEEE-EccCCCCeEEEeeCCEe-ccCCCCcEEEecCCEEEEEEccCCCCCCe-eEEEEEEcCCcee
Q psy16859 88 TMMSVALGEDISFSFR-LAGSPKPKVTWMKGIKD-ITTSSRTMTETVNDYVRLTLKRATDDENG-TYFIVARNIYGSD 162 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~-~~~~p~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~n~~g~~ 162 (168)
..+.+.+|+.+.|.|. ..|.|.|.+.|+.++.. +....+. . ....+.|.|.+++..|.| .|.|.|.|.....
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri--~-~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERV--S-MGQNGNLYFANVEEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccE--E-ECCCceEEEEEEehhhCCCCeEEEEEcccccc
Confidence 5678999999999997 68999999999976544 3322222 2 222368999999999999 7999999986543
No 193
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.24 E-value=9.3e-11 Score=64.59 Aligned_cols=73 Identities=16% Similarity=0.177 Sum_probs=50.4
Q ss_pred ceEeecCCeEEEEEEEccCCCCeEEEeeCCE--ecc----CCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEE-cCCce
Q psy16859 89 MMSVALGEDISFSFRLAGSPKPKVTWMKGIK--DIT----TSSRTMTETVNDYVRLTLKRATDDENGTYFIVAR-NIYGS 161 (168)
Q Consensus 89 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~--~~~----~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~-n~~g~ 161 (168)
.+...+|+.+.|.|.. +.|.+.+.|++... ... ...+... ....|.|.+++.+|+|.|+|.+. |..+.
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~----~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~ 79 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH----TERGLLLRSLQRSDAGVYTCTAVEHSFSQ 79 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE----ecCeEEEeeCChhHCEEEEEEEEccCCeE
Confidence 3567789999999996 57889999997332 111 1112211 12469999999999999999998 45554
Q ss_pred eeEEE
Q psy16859 162 DRAFV 166 (168)
Q Consensus 162 ~~~~~ 166 (168)
....+
T Consensus 80 ~~~~~ 84 (91)
T cd05871 80 TLAKY 84 (91)
T ss_pred EEEEE
Confidence 44433
No 194
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.24 E-value=1.7e-10 Score=62.73 Aligned_cols=66 Identities=17% Similarity=0.219 Sum_probs=43.1
Q ss_pred CCCceEEEEECCEecCCCCCc-eEEE-ecCCCEEEEEEcCCCCCCCeEEEEEEEcccc--eeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPR-FKYI-EDSNNLHTLILSGVTAEEAGKYTCRVSNEYG--YTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~-~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~l~v 66 (168)
+|.|.+.|++.++........ .... .......+|.|.+++.+|+|.|.|.+.+..+ ....++.|+|
T Consensus 13 ~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V 82 (84)
T cd05861 13 NEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITV 82 (84)
T ss_pred CCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEE
Confidence 478999999877643211111 0111 1112356899999999999999999998765 3444556655
No 195
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.24 E-value=1.1e-10 Score=74.80 Aligned_cols=51 Identities=20% Similarity=0.475 Sum_probs=41.1
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEccc
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEY 55 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 55 (168)
+|.|+++||||+.++. ...++.+... + .+|.|.+++.+|+|.|+|.+....
T Consensus 161 ~p~p~I~WyKng~~l~-~~~r~~~~~~-~--~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 161 FKDYTLTWYKNGNIVL-YTDRIQLRNN-N--STLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred CCCceEEEEECCEECC-CCCCEEEeCC-C--CEEEECcCCHHhCEEEEEEEEEeE
Confidence 4689999999999984 4456665533 3 379999999999999999998753
No 196
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.21 E-value=2.1e-10 Score=61.73 Aligned_cols=67 Identities=27% Similarity=0.498 Sum_probs=52.2
Q ss_pred eEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCc-eeeEEE
Q psy16859 90 MSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG-SDRAFV 166 (168)
Q Consensus 90 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g-~~~~~~ 166 (168)
..+..|+.+.|.|.+.+.|.+.+.|++++..+.... . .+.+..+..+|.|.|+|.+.+..+ ..+..+
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~--------~--~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~ 76 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ--------N--GLFIPNVSPEDSGNYTCRASNGSGSNTSTSV 76 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES--------S--EEEESSEEGGGTEEEEEEEEETTEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee--------e--eeeeeeeccccCEEEEEEEEeCCCCeEeeeE
Confidence 457899999999999998889999999887665321 1 166678889999999999999654 333443
No 197
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.20 E-value=2e-10 Score=63.70 Aligned_cols=53 Identities=15% Similarity=0.312 Sum_probs=39.0
Q ss_pred CCCceEEEEECCEec-C------CCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEc
Q psy16859 1 YVKPEVIWLRGNTPL-P------KSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSN 53 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~-~------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 53 (168)
.|.|.|.|++++..+ . ..+.|+.+.....+..+|.|.+++.+|+|.|+|.+..
T Consensus 24 ~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 24 HDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred CCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 378999999977532 0 1234665544434467999999999999999999986
No 198
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.19 E-value=8e-11 Score=64.89 Aligned_cols=53 Identities=26% Similarity=0.382 Sum_probs=39.9
Q ss_pred CCCceEEEEECCEecC-CCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccc
Q psy16859 1 YVKPEVIWLRGNTPLP-KSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYG 56 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 56 (168)
||.|.+.|++++.++. ..+.|..+... .+ .|.|.+++.+|+|.|+|.+.|...
T Consensus 31 ~P~p~~~W~k~~~~~~~~~d~r~~~~~~-~G--~L~fs~v~~~D~g~Y~C~A~n~~~ 84 (96)
T cd05727 31 YPDLSYRWLLNEFPNFIPEDGRRFVSQT-NG--NLYIAKVEASDRGNYSCFVSSPSS 84 (96)
T ss_pred CCCCEEEEEECCcccccccCCCeEEeCC-CC--cEEEeecCHhhCceeEEEEEeccc
Confidence 6999999999987542 22344433332 33 799999999999999999998653
No 199
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.18 E-value=3.2e-10 Score=62.99 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=43.2
Q ss_pred CCCceEEEEECC--------EecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGN--------TPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~--------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
.|.|.|.||+.+ ... ..+.|+..........+|.|.+++.+|+|.|.|.+...... ...+.|+|
T Consensus 24 ~p~~~v~W~~~~~~~l~~~~~~~-~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~~-~~~~~l~v 95 (95)
T cd07701 24 NDNTSLQWSNPAQQTLYFDDKKA-LRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMPVK-TSKAYLTV 95 (95)
T ss_pred CCceEEEEeCCCCeEEEEcCccc-ccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeecCc-cEEEEEEC
Confidence 378999998632 211 23457765443345578999999999999999999874332 44455543
No 200
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.18 E-value=2e-10 Score=63.17 Aligned_cols=60 Identities=28% Similarity=0.467 Sum_probs=43.0
Q ss_pred CCceEEEEECCEecCCCC---CceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEccc-ceeeEEEEEEE
Q psy16859 2 VKPEVIWLRGNTPLPKSS---PRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEY-GYTETFARVDV 66 (168)
Q Consensus 2 p~p~v~W~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~~l~v 66 (168)
|.+++.|++++..+.... .++..... .|.|.+++.+|+|.|.|.+.+.. +....+..|.|
T Consensus 23 p~~~i~W~k~~~~~~~~~~~~~~~~~~~~-----~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V 86 (89)
T cd04979 23 NLASVVWLFQGGPLQRKEEPEERLLVTED-----GLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNV 86 (89)
T ss_pred CCceEEEEECCcccccccCcCceEEEcCC-----CEEEccCCHHHCEEEEEEEecCccceeEeEEEEEE
Confidence 678999999998774321 23333222 59999999999999999998764 34444666666
No 201
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.15 E-value=3.3e-10 Score=60.33 Aligned_cols=65 Identities=9% Similarity=0.128 Sum_probs=48.2
Q ss_pred eEEEEEEEc-cCCCCeEEEeeCCEeccCCCCcEEEec---CCEEEEEEccCCCCCCeeEEEEEEcCCcee
Q psy16859 97 DISFSFRLA-GSPKPKVTWMKGIKDITTSSRTMTETV---NDYVRLTLKRATDDENGTYFIVARNIYGSD 162 (168)
Q Consensus 97 ~~~l~C~~~-~~p~~~~~W~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 162 (168)
.+.|.|... ++|.+.+.|++++..+....... ... ...++|.+.....+|.+.|+|.|.|+.+..
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~-~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQ-ENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCcccc-cCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 368999976 58899999999999886532111 000 123578898888999999999999987653
No 202
>PHA03376 BARF1; Provisional
Probab=99.15 E-value=2.1e-09 Score=65.26 Aligned_cols=87 Identities=15% Similarity=0.279 Sum_probs=54.9
Q ss_pred CceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEEeccCCCcccCCCCeEEecCCcceEeecCCeEE
Q psy16859 20 PRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDIS 99 (168)
Q Consensus 20 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 99 (168)
.++.+..+ +++.+|.|.+++.+|.|+|+|.++...........|.+.. |-.+.+....+ .........
T Consensus 76 GrtD~~~~-~gnvsLvI~~l~lSDdGtY~C~fQkge~~~~k~ehLt~V~----------~~~Lsv~a~~~-dFp~~~~~~ 143 (221)
T PHA03376 76 GFFDIHRS-ANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVK----------PLTLSVHSERS-QFPDFSVLT 143 (221)
T ss_pred cEEEEEec-CCeEEEEEEeeeecCCceEEEEEEcCCCceeeeeeeeeee----------cceEEEEeccc-cCCCCCeeE
Confidence 44555555 6888999999999999999999986543333333333321 11111111000 011245678
Q ss_pred EEEEEccCCCCeEEEeeCC
Q psy16859 100 FSFRLAGSPKPKVTWMKGI 118 (168)
Q Consensus 100 l~C~~~~~p~~~~~W~~~~ 118 (168)
+.|.+.|.|.|.+.|.-+.
T Consensus 144 i~C~sggfP~P~~~Wle~~ 162 (221)
T PHA03376 144 VTCTVNAFPHPHVQWLMPE 162 (221)
T ss_pred EEEecCCcCCchheecccc
Confidence 8899878999999999643
No 203
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.13 E-value=4.9e-10 Score=62.16 Aligned_cols=59 Identities=17% Similarity=0.302 Sum_probs=42.7
Q ss_pred CceEEEEECCEecCCCC------CceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 3 KPEVIWLRGNTPLPKSS------PRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 3 ~p~v~W~~~~~~~~~~~------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
..+|.|||++..+.... .|+..... .|.|..+..+|+|.|+|.+.|........+.|+|
T Consensus 40 ~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~-----~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 40 GLSLMWYKSSGDGEEPIEIIFDGVRMSKEED-----SIWFRPAELQDSGLYTCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred CceEEEEECCCCCCCCCcccccceeEEEeCC-----EEEEEeCChhhCeEEEEEECCCCcceEEEEEEEC
Confidence 34899999975543222 24444444 8999999999999999999998766666665543
No 204
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.11 E-value=4.2e-10 Score=60.50 Aligned_cols=50 Identities=28% Similarity=0.599 Sum_probs=37.5
Q ss_pred CCCc-eEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeE
Q psy16859 1 YVKP-EVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET 60 (168)
Q Consensus 1 ~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 60 (168)
+|.| +|.|+|++.++.. +.. .....|.|..+ .|+|.|.|.+.|..|...+
T Consensus 25 ~P~P~~I~W~k~g~~l~~---~~~-----~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 25 PPEPVEILWWQGGSPLGD---PPA-----PSPSVLNVPGL--NETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred ecCCeEEEEEECCEECCC---CCC-----CCCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence 5899 7999999998843 111 11137888876 5789999999999987654
No 205
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.09 E-value=1.5e-09 Score=57.78 Aligned_cols=56 Identities=11% Similarity=0.129 Sum_probs=39.8
Q ss_pred CCCceEEEEECCEecCCCCCceEEEec--CCCEEEEEEcCCCCCCCeEEEEEEEccccee
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIED--SNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 58 (168)
+|+++|.||+|+++|.... . ..... ....++|.|.....+|.+.|+|++.|..+..
T Consensus 12 kP~a~i~W~k~~~~l~~~~-~-~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 12 KPAATLRWYRDRKELKGVI-S-QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred cCCCeEEEEECCEECCCCc-c-cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 5999999999999985321 1 00000 0112469999999999999999999987543
No 206
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.09 E-value=3.6e-09 Score=60.43 Aligned_cols=72 Identities=17% Similarity=0.221 Sum_probs=52.9
Q ss_pred cceEeecCCeEEEEEEEccCCCCeEEEeeCCEe------c--------cCCCCcEEEec--CCEEEEEEccCCCCCCeeE
Q psy16859 88 TMMSVALGEDISFSFRLAGSPKPKVTWMKGIKD------I--------TTSSRTMTETV--NDYVRLTLKRATDDENGTY 151 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~------~--------~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y 151 (168)
..+.+..|++++|.|.+.+.+...+.|++.... + ....++..... ....+|.|.+++.+|+|.|
T Consensus 6 ~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y 85 (109)
T cd04983 6 QSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVY 85 (109)
T ss_pred CceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEE
Confidence 467789999999999998777788999974311 0 01223333222 2457899999999999999
Q ss_pred EEEEEcCC
Q psy16859 152 FIVARNIY 159 (168)
Q Consensus 152 ~C~~~n~~ 159 (168)
.|.+.+..
T Consensus 86 ~C~~~~~~ 93 (109)
T cd04983 86 FCALSESG 93 (109)
T ss_pred EEEEecCC
Confidence 99999764
No 207
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.08 E-value=2.5e-09 Score=59.14 Aligned_cols=67 Identities=30% Similarity=0.361 Sum_probs=50.2
Q ss_pred CCCce-EEEEECCEecCCCCC-ceEEEec--CCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEE
Q psy16859 1 YVKPE-VIWLRGNTPLPKSSP-RFKYIED--SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVI 67 (168)
Q Consensus 1 ~p~p~-v~W~~~~~~~~~~~~-~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 67 (168)
||+|+ +.|.+++..+..... .+..... ....+.|++.+++.+|.|.|+|.+.|.......++.|.|+
T Consensus 30 YP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v~ 100 (101)
T cd05860 30 YPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYVN 100 (101)
T ss_pred CCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEEe
Confidence 89998 999999887642222 2211111 1235789999999999999999999999888888888773
No 208
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.08 E-value=2e-09 Score=59.30 Aligned_cols=61 Identities=25% Similarity=0.370 Sum_probs=41.4
Q ss_pred CCCceEEEEECC--EecC---CCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEc-ccceeeEEEEEEE
Q psy16859 1 YVKPEVIWLRGN--TPLP---KSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSN-EYGYTETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~--~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~l~v 66 (168)
.|.|.+.||+.+ .... ....++..... .|.|.+++.+|+|.|+|.+.+ ..+.....+.|.|
T Consensus 22 ~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~-----~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v 88 (91)
T cd05871 22 SPQASVKWLFQRGGDQRKEEVKTEERLIHTER-----GLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHV 88 (91)
T ss_pred CCCceEEEEEECCCCCccccccccccEEEecC-----eEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEE
Confidence 378999999843 2211 12234443322 699999999999999999984 5555555666766
No 209
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.07 E-value=7.6e-10 Score=60.32 Aligned_cols=56 Identities=27% Similarity=0.364 Sum_probs=43.1
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARV 64 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 64 (168)
+|.|.+.|++++..+.. +.. .....|.|.+++.+|+|.|.|.+.|..|.....+.|
T Consensus 29 ~~~~~i~W~~~~~~~~~---~~~-----~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l 84 (85)
T cd05754 29 SPAYTLVWTRVGGGLPS---RAM-----DFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL 84 (85)
T ss_pred CCCcEEEEEECCCcCCC---ccc-----ccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence 37789999999876532 111 112379999999999999999999999888776654
No 210
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.06 E-value=2.6e-09 Score=57.77 Aligned_cols=63 Identities=16% Similarity=0.251 Sum_probs=44.7
Q ss_pred EEEEEEEcc-CCCCeEEEeeCCEeccCCCCcEE-EecCC----EEEEEEccCCCCCCeeEEEEEEcCCc
Q psy16859 98 ISFSFRLAG-SPKPKVTWMKGIKDITTSSRTMT-ETVND----YVRLTLKRATDDENGTYFIVARNIYG 160 (168)
Q Consensus 98 ~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~-~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~g 160 (168)
+.|.|.+.| .|.+.+.|++++..+........ ...+. .+.|.+.....+|.|.|+|.|.|...
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l 70 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEAL 70 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccC
Confidence 689999987 68889999999987754321111 11111 24677887778889999999999753
No 211
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.03 E-value=5.9e-09 Score=57.92 Aligned_cols=64 Identities=20% Similarity=0.417 Sum_probs=49.3
Q ss_pred CCCc-eEEEEECCEecCCC-CCceEEEec---CCCEEEEEEcCCCCCC-CeEEEEEEEcccceeeEEEEE
Q psy16859 1 YVKP-EVIWLRGNTPLPKS-SPRFKYIED---SNNLHTLILSGVTAEE-AGKYTCRVSNEYGYTETFARV 64 (168)
Q Consensus 1 ~p~p-~v~W~~~~~~~~~~-~~~~~~~~~---~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~~~~~~~l 64 (168)
+|+| .|.|.+++..|... ..|+.+... .+..+.|+|.++...| .|.|.|.+.|..|.....+.|
T Consensus 28 ~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 28 TPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred CCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceEEEEe
Confidence 4676 57999988877533 468877654 2457899999998766 799999999999988766654
No 212
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.03 E-value=5.7e-09 Score=57.95 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=52.8
Q ss_pred ceEeecCCeEEEEEEEc-----------cCCCCeEEEeeCCEeccCCCC-----cEEEecCCEEEEEEccCCCCCCeeEE
Q psy16859 89 MMSVALGEDISFSFRLA-----------GSPKPKVTWMKGIKDITTSSR-----TMTETVNDYVRLTLKRATDDENGTYF 152 (168)
Q Consensus 89 ~~~~~~g~~~~l~C~~~-----------~~p~~~~~W~~~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~g~y~ 152 (168)
...+.+|+.+.|.|..- ......+.|++++........ .+... ....|.|.++..+|+|.|+
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~--~~~~Lwf~Pa~~eDSG~Y~ 86 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSK--EEDSIWFRPAELQDSGLYT 86 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEE--eCCEEEEEeCChhhCeEEE
Confidence 35678999999999861 122347999998744433221 12222 2247999999999999999
Q ss_pred EEEEcCCceeeEEE
Q psy16859 153 IVARNIYGSDRAFV 166 (168)
Q Consensus 153 C~~~n~~g~~~~~~ 166 (168)
|.+.|...-.+..+
T Consensus 87 C~~rN~t~C~~~~i 100 (104)
T cd05896 87 CVLRNSTYCMKVSM 100 (104)
T ss_pred EEECCCCcceEEEE
Confidence 99999886655544
No 213
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.02 E-value=3.1e-09 Score=54.15 Aligned_cols=50 Identities=32% Similarity=0.636 Sum_probs=37.7
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccc
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYG 56 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 56 (168)
+|.+.+.|++++..+. ....... ....|.|.+++.+|+|.|.|.+.+..|
T Consensus 14 ~~~~~v~W~~~~~~~~---~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 14 DPVPNITWLKDGKPLP---ESNRLSA---SGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCCCeEEEEECCEECC---CCCEEec---CCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 4778999999998874 2222222 223799999999999999999987643
No 214
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=99.02 E-value=7.4e-10 Score=58.73 Aligned_cols=57 Identities=23% Similarity=0.469 Sum_probs=39.9
Q ss_pred EEEEEEEccCC-CCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEc
Q psy16859 98 ISFSFRLAGSP-KPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARN 157 (168)
Q Consensus 98 ~~l~C~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 157 (168)
+.|.|.+.+.+ .+.+.|+ +...... ............|.+.++..+|.|.|+|.|.|
T Consensus 18 ~~l~C~~~~~~~~~~~~W~-~~~~~~~--~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 18 VTLTCSAEGGPPPPSISWY-DSNPSFN--SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSEESSEEEEEE-TEEEEEE--EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEEEEccccCCeEEEEE-ecCCcee--eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 99999999877 7789999 1111110 01111122346899999999999999999987
No 215
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.01 E-value=7.9e-09 Score=59.13 Aligned_cols=71 Identities=11% Similarity=0.171 Sum_probs=50.8
Q ss_pred cceEeecCCeEEEEEEEccCCCCeEEEeeCCE--ecc--------------C--CCCcEEEec-CCEEEEEEccCCCCCC
Q psy16859 88 TMMSVALGEDISFSFRLAGSPKPKVTWMKGIK--DIT--------------T--SSRTMTETV-NDYVRLTLKRATDDEN 148 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~--~~~--------------~--~~~~~~~~~-~~~~~l~i~~~~~~d~ 148 (168)
..+.+.+|++++|.|.+.+ +...+.|++... .+. . ..++..... ....+|.|.+++.+|+
T Consensus 6 ~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Ds 84 (110)
T cd05899 6 RYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDS 84 (110)
T ss_pred CceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhC
Confidence 4678899999999999987 677899998432 110 0 122222212 1346899999999999
Q ss_pred eeEEEEEEcCC
Q psy16859 149 GTYFIVARNIY 159 (168)
Q Consensus 149 g~y~C~~~n~~ 159 (168)
|.|.|.+.+..
T Consensus 85 g~Y~Ca~~~~~ 95 (110)
T cd05899 85 AVYLCASSLGG 95 (110)
T ss_pred EEEEEEeeCCC
Confidence 99999998754
No 216
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.99 E-value=6e-09 Score=59.08 Aligned_cols=70 Identities=19% Similarity=0.305 Sum_probs=50.1
Q ss_pred EeecCCeEEEEEEEccC-CCCeEEEeeCCEe-----c------------cCCCCcEEEecC--CEEEEEEccCCCCCCee
Q psy16859 91 SVALGEDISFSFRLAGS-PKPKVTWMKGIKD-----I------------TTSSRTMTETVN--DYVRLTLKRATDDENGT 150 (168)
Q Consensus 91 ~~~~g~~~~l~C~~~~~-p~~~~~W~~~~~~-----~------------~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~ 150 (168)
.+..|+.++|.|.+... +...+.|++.... + ....++...... ...+|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 46789999999999876 5667999974320 0 011223222222 45689999999999999
Q ss_pred EEEEEEcCCc
Q psy16859 151 YFIVARNIYG 160 (168)
Q Consensus 151 y~C~~~n~~g 160 (168)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999998765
No 217
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.99 E-value=6.3e-09 Score=56.28 Aligned_cols=58 Identities=24% Similarity=0.395 Sum_probs=38.3
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCC---CEEEEEEcCCCCCCCeEEEEEEEccccee
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSN---NLHTLILSGVTAEEAGKYTCRVSNEYGYT 58 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 58 (168)
+|.|+|.|+++++++.............. ....|.|.....+|.|.|+|.+.|.....
T Consensus 12 ~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~ 72 (82)
T cd05759 12 KPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPT 72 (82)
T ss_pred cCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCC
Confidence 58899999999998842211111111101 12468888888889999999999875433
No 218
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.98 E-value=9e-10 Score=60.64 Aligned_cols=51 Identities=14% Similarity=0.281 Sum_probs=39.3
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCe-EEEEEEEccc
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAG-KYTCRVSNEY 55 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~~~~~ 55 (168)
||.|.|.|++++..+-..+.|+.+..+ +.|.|.+++.+|.| .|.|.+.+..
T Consensus 31 ~P~P~i~W~~~~~~~i~~~~Ri~~~~~----GnL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 31 AVPLRIYWMNSDLLHITQDERVSMGQN----GNLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred CCCCEEEEECCCCccccccccEEECCC----ceEEEEEEehhhCCCCeEEEEEccc
Confidence 699999999877553234556544433 37999999999999 7999999864
No 219
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.97 E-value=6.5e-09 Score=56.14 Aligned_cols=64 Identities=17% Similarity=0.216 Sum_probs=50.5
Q ss_pred cceEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEE
Q psy16859 88 TMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVAR 156 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 156 (168)
....+..|.++.|.|...+ +.+.+.|++++..+....++..... -|.|..++..|+|.|.|.+.
T Consensus 4 ~~~tv~~g~~v~L~C~~~s-~~A~v~W~~ng~~l~~~~r~~~~~~----GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRS-NLASPVWLFNGTPLNAQFSYRVGTD----GLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred eEEEEecCCCEEEECCCCC-CCccEEEEECCcccCCCcceEEeCC----CCEEEECCHhhCEEEEEEEe
Confidence 4567889999999999876 5779999999998865443332222 37789999999999999987
No 220
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.95 E-value=1.8e-08 Score=57.23 Aligned_cols=71 Identities=20% Similarity=0.312 Sum_probs=49.8
Q ss_pred cceEeecCCeEEEEEEEccCC-CCeEEEeeCC--Ee---cc---------CCCCcEEEecCCEEEEEEccCCCCCCeeEE
Q psy16859 88 TMMSVALGEDISFSFRLAGSP-KPKVTWMKGI--KD---IT---------TSSRTMTETVNDYVRLTLKRATDDENGTYF 152 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~~--~~---~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 152 (168)
..+.+.+|++++|.|.+.+.. ...+.|++.. .. +. ...++..........|.|.+++.+|+|.|.
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~ 87 (106)
T cd04980 8 ATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYY 87 (106)
T ss_pred CcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEE
Confidence 467788999999999987655 5679999732 11 00 011233222234467999999999999999
Q ss_pred EEEEcC
Q psy16859 153 IVARNI 158 (168)
Q Consensus 153 C~~~n~ 158 (168)
|.+.+.
T Consensus 88 Ca~~~~ 93 (106)
T cd04980 88 CQQYGT 93 (106)
T ss_pred EEEeCC
Confidence 999764
No 221
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.94 E-value=1.3e-08 Score=56.17 Aligned_cols=72 Identities=10% Similarity=0.140 Sum_probs=52.4
Q ss_pred eEEecCCcceEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcC
Q psy16859 81 MFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNI 158 (168)
Q Consensus 81 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 158 (168)
.+...|. ..+..|..++|.|... .+...+.|++++....... .........+.|.+++.+|+|.|+|...+.
T Consensus 4 ~L~a~p~--~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~---~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 4 SLWAEPS--SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK---PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred EEEecCC--CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc---cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 4444453 4578999999999885 5677899999887543211 111233467999999999999999999986
No 222
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.92 E-value=3.5e-09 Score=57.32 Aligned_cols=47 Identities=17% Similarity=0.143 Sum_probs=36.7
Q ss_pred CCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEccccee
Q psy16859 2 VKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58 (168)
Q Consensus 2 p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 58 (168)
|.+.+.|||++..+... .....|.|.+++.+|+|.|.|.+.+..+..
T Consensus 28 ~~~~~~w~k~g~~~~~~----------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~ 74 (83)
T cd05753 28 PVYKVTYYRDGKAKKYS----------HSNSNLSIPQATLSDSGSYHCSGIIGSYDY 74 (83)
T ss_pred cceEEEEEECCeEcccc----------CCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence 45689999999876311 112379999999999999999999887644
No 223
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.92 E-value=2e-08 Score=56.42 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=31.4
Q ss_pred CCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 29 NNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 29 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
.+..+|+|.+++.+|+|.|.|.+.+..+.....+.|.|
T Consensus 62 ~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 62 EGSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred CCcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence 45678999999999999999999987766666666665
No 224
>smart00409 IG Immunoglobulin.
Probab=98.92 E-value=5.1e-08 Score=52.68 Aligned_cols=63 Identities=33% Similarity=0.559 Sum_probs=48.0
Q ss_pred CCceEEEEEC-CEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 2 VKPEVIWLRG-NTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 2 p~p~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+.+.+.|+++ +..+. ...++..... ....+|.|.++..+|+|.|.|.+.+..+.....+.|.|
T Consensus 22 ~~~~~~W~~~~~~~v~-~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V 85 (86)
T smart00409 22 PPPEVTWYKQGGKLLA-ESGRFSVSRS-GSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV 85 (86)
T ss_pred CCCeEEEEECCCEEcC-CCCcEEEEEc-CCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence 4678999998 77773 3456666655 43678999999999999999999977666655555554
No 225
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.92 E-value=5.1e-08 Score=52.68 Aligned_cols=63 Identities=33% Similarity=0.559 Sum_probs=48.0
Q ss_pred CCceEEEEEC-CEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 2 VKPEVIWLRG-NTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 2 p~p~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+.+.+.|+++ +..+. ...++..... ....+|.|.++..+|+|.|.|.+.+..+.....+.|.|
T Consensus 22 ~~~~~~W~~~~~~~v~-~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V 85 (86)
T smart00410 22 PPPEVTWYKQGGKLLA-ESGRFSVSRS-GSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV 85 (86)
T ss_pred CCCeEEEEECCCEEcC-CCCcEEEEEc-CCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence 4678999998 77773 3456666655 43678999999999999999999977666655555554
No 226
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.91 E-value=1.2e-08 Score=55.67 Aligned_cols=64 Identities=22% Similarity=0.255 Sum_probs=43.4
Q ss_pred CceEEEEECCEecCCC--CC--ceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 3 KPEVIWLRGNTPLPKS--SP--RFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 3 ~p~v~W~~~~~~~~~~--~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
...+.|.+.++.+... .. +..........+.|.|.+++.+|+|.|+|.+.|..+.......|.|
T Consensus 17 ~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V 84 (86)
T cd05862 17 GIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIV 84 (86)
T ss_pred cEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccEEEEE
Confidence 4578998877643110 11 1111111133568999999999999999999998887777777777
No 227
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.91 E-value=2e-08 Score=55.93 Aligned_cols=63 Identities=22% Similarity=0.331 Sum_probs=41.0
Q ss_pred CCceEEEEECCEe-c------CCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEE
Q psy16859 2 VKPEVIWLRGNTP-L------PKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVD 65 (168)
Q Consensus 2 p~p~v~W~~~~~~-~------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 65 (168)
|.+.+.|++.+.. + .....|+..........+|.|.+++.+|+|.|.|.+..... ....+.|+
T Consensus 25 ~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~-~~~~~~~~ 94 (95)
T cd05717 25 DNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMPV-QTAKATVT 94 (95)
T ss_pred CCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCCC-ceEEEEEE
Confidence 5678999863221 1 01235776643324457899999999999999999986542 23444444
No 228
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.89 E-value=4.8e-08 Score=55.49 Aligned_cols=74 Identities=16% Similarity=0.293 Sum_probs=48.9
Q ss_pred cCCeEEEEEEEccCC------CCeEEEeeCC-----E-ec--cCCC------CcE--EE---ecCCEEEEEEccCCCCCC
Q psy16859 94 LGEDISFSFRLAGSP------KPKVTWMKGI-----K-DI--TTSS------RTM--TE---TVNDYVRLTLKRATDDEN 148 (168)
Q Consensus 94 ~g~~~~l~C~~~~~p------~~~~~W~~~~-----~-~~--~~~~------~~~--~~---~~~~~~~l~i~~~~~~d~ 148 (168)
.|++++|.|.....+ ...+.|++.. . .+ .... .+. .. ......+|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 378999999987643 4579999852 1 00 0000 111 11 012346899999999999
Q ss_pred eeEEEEEEcCCceeeEEEE
Q psy16859 149 GTYFIVARNIYGSDRAFVT 167 (168)
Q Consensus 149 g~y~C~~~n~~g~~~~~~~ 167 (168)
|.|.|.+.+..+.....+.
T Consensus 81 G~Y~C~v~~~~~~~~~~v~ 99 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVE 99 (106)
T ss_pred EEEEEEEEcCCCceEEEEE
Confidence 9999999998776665553
No 229
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.88 E-value=2.7e-08 Score=56.77 Aligned_cols=74 Identities=16% Similarity=0.238 Sum_probs=48.7
Q ss_pred cCCeEEEEEEEccCC------------CCeEEEeeCCE-----ecc---------CC--CCcEEEe---cCCEEEEEEcc
Q psy16859 94 LGEDISFSFRLAGSP------------KPKVTWMKGIK-----DIT---------TS--SRTMTET---VNDYVRLTLKR 142 (168)
Q Consensus 94 ~g~~~~l~C~~~~~p------------~~~~~W~~~~~-----~~~---------~~--~~~~~~~---~~~~~~l~i~~ 142 (168)
.|++++|.|...... .+.+.|++... .+. .. .|+.+.. .....+|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 478999999986432 35799997321 010 00 1222221 22347899999
Q ss_pred CCCCCCeeEEEEEEcCCceeeEEEE
Q psy16859 143 ATDDENGTYFIVARNIYGSDRAFVT 167 (168)
Q Consensus 143 ~~~~d~g~y~C~~~n~~g~~~~~~~ 167 (168)
++.+|+|.|.|.+.+........+.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~ 105 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVE 105 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEE
Confidence 9999999999999987666655543
No 230
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.88 E-value=2e-08 Score=56.61 Aligned_cols=76 Identities=21% Similarity=0.234 Sum_probs=49.3
Q ss_pred EeecCCeEEEEEEEccCCCCeEEEeeCCEecc--------CCCC-------cE-EEecCCEEEEEEccCCCCCCeeEEEE
Q psy16859 91 SVALGEDISFSFRLAGSPKPKVTWMKGIKDIT--------TSSR-------TM-TETVNDYVRLTLKRATDDENGTYFIV 154 (168)
Q Consensus 91 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~--------~~~~-------~~-~~~~~~~~~l~i~~~~~~d~g~y~C~ 154 (168)
.+.+|+++.|.|.........+.|+++..... .... +. .......++|.|.+++..|+|.|+|.
T Consensus 9 ~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~ 88 (105)
T cd05774 9 QVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTLQ 88 (105)
T ss_pred cccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEEE
Confidence 46799999999976544455799999532110 0000 00 00011235899999999999999999
Q ss_pred EEcCC-ceeeEEE
Q psy16859 155 ARNIY-GSDRAFV 166 (168)
Q Consensus 155 ~~n~~-g~~~~~~ 166 (168)
+.+.. ....+.+
T Consensus 89 v~~~~~~~~~~~v 101 (105)
T cd05774 89 TITTNFQVEQATV 101 (105)
T ss_pred EEeCCccEEEEEE
Confidence 99976 4444444
No 231
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.88 E-value=3.3e-08 Score=57.11 Aligned_cols=70 Identities=11% Similarity=0.284 Sum_probs=50.6
Q ss_pred cceEeecCCeEEEEEEEcc--CCCCeEEEeeCC--Eec------c-----------CCCCcEEEecC--CEEEEEEccCC
Q psy16859 88 TMMSVALGEDISFSFRLAG--SPKPKVTWMKGI--KDI------T-----------TSSRTMTETVN--DYVRLTLKRAT 144 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~--~p~~~~~W~~~~--~~~------~-----------~~~~~~~~~~~--~~~~l~i~~~~ 144 (168)
..+.+..|+.++|.|.+.+ .+.+.+.|++.. ... . ...++...... ....|.|.+++
T Consensus 6 ~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~ 85 (116)
T cd04982 6 LSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLE 85 (116)
T ss_pred CeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECC
Confidence 4567889999999999877 567789999842 110 0 11233333233 45789999999
Q ss_pred CCCCeeEEEEEEc
Q psy16859 145 DDENGTYFIVARN 157 (168)
Q Consensus 145 ~~d~g~y~C~~~n 157 (168)
.+|+|.|.|.+..
T Consensus 86 ~~Dsg~Y~C~~~~ 98 (116)
T cd04982 86 KEDSATYYCAYWE 98 (116)
T ss_pred HHHCEEEEEEEec
Confidence 9999999999975
No 232
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.88 E-value=5.1e-08 Score=54.78 Aligned_cols=33 Identities=18% Similarity=0.141 Sum_probs=28.4
Q ss_pred EEEEEEccCCCCCCeeEEEEEEcCCceeeEEEE
Q psy16859 135 YVRLTLKRATDDENGTYFIVARNIYGSDRAFVT 167 (168)
Q Consensus 135 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 167 (168)
..+|.|.+++.+|+|.|+|.+.|..+.....++
T Consensus 64 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~ 96 (100)
T cd05713 64 SVALRIHNVRASDEGLYTCFFQSDGFYEEATVE 96 (100)
T ss_pred cEEEEEEcCChhhCEEEEEEEecCCcEEEEEEE
Confidence 468999999999999999999988777766654
No 233
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.87 E-value=3.7e-08 Score=55.94 Aligned_cols=75 Identities=17% Similarity=0.278 Sum_probs=50.1
Q ss_pred cCCeEEEEEEEccCC------CCeEEEeeCCEe--------ccC----------CCCcEEEec-CCEEEEEEccCCCCCC
Q psy16859 94 LGEDISFSFRLAGSP------KPKVTWMKGIKD--------ITT----------SSRTMTETV-NDYVRLTLKRATDDEN 148 (168)
Q Consensus 94 ~g~~~~l~C~~~~~p------~~~~~W~~~~~~--------~~~----------~~~~~~~~~-~~~~~l~i~~~~~~d~ 148 (168)
.|++++|.|.....| ...+.|++.... +.. ..+...... ....+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 378999999986542 346999985310 000 011111111 1235899999999999
Q ss_pred eeEEEEEEcCCceeeEEEEC
Q psy16859 149 GTYFIVARNIYGSDRAFVTV 168 (168)
Q Consensus 149 g~y~C~~~n~~g~~~~~~~v 168 (168)
|.|.|.+.+..+.....++|
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l 100 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVAL 100 (106)
T ss_pred EEEEEEEEecccceEEEEEE
Confidence 99999999988877766643
No 234
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.86 E-value=1.2e-08 Score=56.36 Aligned_cols=57 Identities=16% Similarity=0.291 Sum_probs=38.4
Q ss_pred CCceEEEEECC-EecCC------------CCCceEEEec--CCCEEEEEEcCCCCCCCeEEEEEEEccccee
Q psy16859 2 VKPEVIWLRGN-TPLPK------------SSPRFKYIED--SNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58 (168)
Q Consensus 2 p~p~v~W~~~~-~~~~~------------~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 58 (168)
|.+.+.||+++ +.+.. ..+|+..... ..+.+.|+|.+++.+|+|.|.|.+.+..+..
T Consensus 20 ~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C~v~~~~~~~ 91 (94)
T cd07690 20 KSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYICEVEDKKEEV 91 (94)
T ss_pred CCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEEEECCccceE
Confidence 56889999776 32211 1223333321 1446789999999999999999998875543
No 235
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.85 E-value=8e-09 Score=53.07 Aligned_cols=49 Identities=31% Similarity=0.521 Sum_probs=33.1
Q ss_pred CCceEEEEECCEecCCCCCceEEEecCCCEE-EEEEcCCCCCCCeEEEEEE
Q psy16859 2 VKPEVIWLRGNTPLPKSSPRFKYIEDSNNLH-TLILSGVTAEEAGKYTCRV 51 (168)
Q Consensus 2 p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~l~i~~~~~~d~G~Y~C~~ 51 (168)
|.+.+.|++++..+. ............... .|.|.+++.+|+|.|+|.+
T Consensus 15 ~~~~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 15 PPTTVTWSKNGQSLP-EGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp STSEEEEEETTTTTS-EEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCcEEEEEECCcccc-CcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 678999999988652 222222222211111 3999999999999999986
No 236
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.83 E-value=1.5e-07 Score=54.26 Aligned_cols=73 Identities=15% Similarity=0.234 Sum_probs=47.8
Q ss_pred cceEeecCCeEEEEEEEccCC----CCeEEEeeC----CEe--c---c------CCCCcE----EE--ecCCEEEEEEcc
Q psy16859 88 TMMSVALGEDISFSFRLAGSP----KPKVTWMKG----IKD--I---T------TSSRTM----TE--TVNDYVRLTLKR 142 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p----~~~~~W~~~----~~~--~---~------~~~~~~----~~--~~~~~~~l~i~~ 142 (168)
..+.+..|+.++|.|.....+ ...+.|++. +.. + . ...++. .. ......+|.|.+
T Consensus 6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~ 85 (115)
T cd05880 6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQ 85 (115)
T ss_pred ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEee
Confidence 467889999999999976432 235999742 111 1 0 011111 11 012346799999
Q ss_pred CCCCCCeeEEEEEEcCCc
Q psy16859 143 ATDDENGTYFIVARNIYG 160 (168)
Q Consensus 143 ~~~~d~g~y~C~~~n~~g 160 (168)
++.+|+|.|.|.+.|..+
T Consensus 86 v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 86 LQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred CChhhCEEEEEEEEeCCC
Confidence 999999999999998654
No 237
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.82 E-value=5.5e-08 Score=54.43 Aligned_cols=68 Identities=16% Similarity=0.267 Sum_probs=47.6
Q ss_pred EeecCCeEEEEEEEccC--CCCeEEEeeCCE--ecc------------CCCCcEEEecCCEEEEEEccCCCCCCeeEEEE
Q psy16859 91 SVALGEDISFSFRLAGS--PKPKVTWMKGIK--DIT------------TSSRTMTETVNDYVRLTLKRATDDENGTYFIV 154 (168)
Q Consensus 91 ~~~~g~~~~l~C~~~~~--p~~~~~W~~~~~--~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 154 (168)
.+.+|++++|.|...+. ....+.|++... ... ...++.........+|.|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 46789999999998764 456699997321 110 01233333333457899999999999999999
Q ss_pred EEcC
Q psy16859 155 ARNI 158 (168)
Q Consensus 155 ~~n~ 158 (168)
+.+.
T Consensus 82 ~~~~ 85 (98)
T cd04984 82 VWDS 85 (98)
T ss_pred EccC
Confidence 8764
No 238
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.82 E-value=8.8e-08 Score=53.59 Aligned_cols=72 Identities=18% Similarity=0.278 Sum_probs=46.2
Q ss_pred CeEEEEEEEccCC---CCeEEEeeCCEe----c-----------cCCCCcEEEecC---CEEEEEEccCCCCCCeeEEEE
Q psy16859 96 EDISFSFRLAGSP---KPKVTWMKGIKD----I-----------TTSSRTMTETVN---DYVRLTLKRATDDENGTYFIV 154 (168)
Q Consensus 96 ~~~~l~C~~~~~p---~~~~~W~~~~~~----~-----------~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~ 154 (168)
++++|.|.....+ ...+.|++.... + ....+.+..... ...+|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4689999987644 336999984321 0 010011111111 346899999999999999999
Q ss_pred EEc-CCceeeEEEE
Q psy16859 155 ARN-IYGSDRAFVT 167 (168)
Q Consensus 155 ~~n-~~g~~~~~~~ 167 (168)
+.+ +.|.....+.
T Consensus 81 v~~~~~g~~~~~~~ 94 (98)
T cd05718 81 FATFPQGNRQKVTT 94 (98)
T ss_pred EEeCCCCcEEEEEE
Confidence 875 6677766554
No 239
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.81 E-value=5.5e-08 Score=52.54 Aligned_cols=58 Identities=22% Similarity=0.447 Sum_probs=41.8
Q ss_pred CCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 2 VKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 2 p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
+.+.+.|++++..+. .+.++..... -|.|..++.+|+|.|.|.... .|.....+.+.+
T Consensus 23 ~~A~v~W~~ng~~l~-~~~r~~~~~~-----GLlI~~~~~~dsG~Y~C~s~E-~gf~~~~~~y~l 80 (85)
T cd05872 23 NLASPVWLFNGTPLN-AQFSYRVGTD-----GLLILVTSPEHSGTYRCYSEE-EGFQQLVASYSL 80 (85)
T ss_pred CCccEEEEECCcccC-CCcceEEeCC-----CCEEEECCHhhCEEEEEEEec-CCCeEEEEEEEE
Confidence 456899999999984 3456655544 388999999999999999873 355554444443
No 240
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.81 E-value=9.1e-08 Score=54.35 Aligned_cols=39 Identities=15% Similarity=0.349 Sum_probs=32.9
Q ss_pred CCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEE
Q psy16859 29 NNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVI 67 (168)
Q Consensus 29 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 67 (168)
.+..+|.|.+++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus 65 ~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 65 DLDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred CCcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEE
Confidence 345689999999999999999999877777777777773
No 241
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.80 E-value=4.8e-08 Score=54.31 Aligned_cols=69 Identities=23% Similarity=0.305 Sum_probs=49.0
Q ss_pred ecCCeEEEEEEEccC-C-CCeEEEeeCCEeccCCCC-cEEE-ec-CC---EEEEEEccCCCCCCeeEEEEEEcCCce
Q psy16859 93 ALGEDISFSFRLAGS-P-KPKVTWMKGIKDITTSSR-TMTE-TV-ND---YVRLTLKRATDDENGTYFIVARNIYGS 161 (168)
Q Consensus 93 ~~g~~~~l~C~~~~~-p-~~~~~W~~~~~~~~~~~~-~~~~-~~-~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~ 161 (168)
..|..+.|.|.+.|. | ...+.|++++..+..... .... .. +. .+.|.+....+.+.+.|+|.|.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 468899999999986 5 357999999988765432 1111 11 11 145677777777999999999997654
No 242
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.80 E-value=8.7e-08 Score=51.26 Aligned_cols=62 Identities=19% Similarity=0.287 Sum_probs=44.1
Q ss_pred EEEEEEEcc-CCCCeEEEeeCCEeccCCCCcEEEecC---CEEEEEEccCCCCCCeeEEEEEEcCC
Q psy16859 98 ISFSFRLAG-SPKPKVTWMKGIKDITTSSRTMTETVN---DYVRLTLKRATDDENGTYFIVARNIY 159 (168)
Q Consensus 98 ~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~ 159 (168)
+.|.|.+.| .|.+.+.|++++..+............ ..++|.+.....+|...|+|.|.|+.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~ 67 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPA 67 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcc
Confidence 689999886 788899999999888654321111111 23577787766777779999999975
No 243
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.80 E-value=1.7e-08 Score=53.96 Aligned_cols=38 Identities=13% Similarity=0.457 Sum_probs=30.6
Q ss_pred ceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcc
Q psy16859 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNE 54 (168)
Q Consensus 4 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 54 (168)
+.+.||||+..+.. . . .+|.|.++ .+|+|.|+|.+.+.
T Consensus 31 ~~~~W~kng~~l~~---------~-~--~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 31 NSTQWYHNGKLLET---------T-T--NSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred ccEEEEECCEEeec---------c-C--CeEEEeec-ccCCEEeEEECCCC
Confidence 47999999998721 1 1 27899999 99999999999875
No 244
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.80 E-value=1.7e-07 Score=50.65 Aligned_cols=64 Identities=13% Similarity=0.260 Sum_probs=43.0
Q ss_pred EEEEEEEcc-CCCCeEEEeeCCEeccCCCCcEEEecCC----EEEEEEccCCCCCCeeEEEEEEcCCce
Q psy16859 98 ISFSFRLAG-SPKPKVTWMKGIKDITTSSRTMTETVND----YVRLTLKRATDDENGTYFIVARNIYGS 161 (168)
Q Consensus 98 ~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~g~ 161 (168)
+.|.|.+.+ .|.+.+.|++++..+............. .+.|.+....+++.+.|+|.+.|....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 689999976 5888999999998876432111111111 234566555666678999999997654
No 245
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.79 E-value=8.7e-08 Score=53.13 Aligned_cols=66 Identities=14% Similarity=0.033 Sum_probs=46.3
Q ss_pred eEeecCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEE
Q psy16859 90 MSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVAR 156 (168)
Q Consensus 90 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 156 (168)
..+..|++++|.|.... +...+.|++++...................+.|..++.+|+|.|.|...
T Consensus 10 ~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 10 PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 45779999999998865 5567999998765332110000112223578999999999999999975
No 246
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.79 E-value=1.2e-07 Score=52.80 Aligned_cols=72 Identities=13% Similarity=0.240 Sum_probs=48.2
Q ss_pred eEeecCCeEEEEEEEcc-CCCCe--EEEeeCCEeccCCCCcEE--EecCCEEEEEEccCCCCCCeeEEEEEEcCCce
Q psy16859 90 MSVALGEDISFSFRLAG-SPKPK--VTWMKGIKDITTSSRTMT--ETVNDYVRLTLKRATDDENGTYFIVARNIYGS 161 (168)
Q Consensus 90 ~~~~~g~~~~l~C~~~~-~p~~~--~~W~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 161 (168)
..+.+|+.++|.|.+.| .|.+. +.|++++..+........ .......++.+.....+|.-.|+|.|.+..+.
T Consensus 11 ~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 11 SWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP 87 (100)
T ss_pred CcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence 34689999999999987 66665 799999988864321110 00112346666555444555999999987654
No 247
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.78 E-value=9.7e-08 Score=54.90 Aligned_cols=41 Identities=17% Similarity=0.433 Sum_probs=31.0
Q ss_pred CceEEEec-CCCEEEEEEcCCCCCCCeEEEEEEEcccceeeE
Q psy16859 20 PRFKYIED-SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET 60 (168)
Q Consensus 20 ~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 60 (168)
.|.....+ ..+..+|.|.+++.+|.|.|+|.+.|..+....
T Consensus 67 ~Rv~f~g~~~~~daSI~I~nv~~sD~G~Y~C~v~n~p~~~~~ 108 (116)
T cd05879 67 ERIEWVGNPSRKDGSIVIHNLDYTDNGTFTCDVKNPPDIVGK 108 (116)
T ss_pred CceEEeCCCCcCeeEEEEccCCcccCEEEEEEEEcCCCcCCc
Confidence 35554443 245679999999999999999999987654433
No 248
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.77 E-value=2e-07 Score=53.65 Aligned_cols=73 Identities=15% Similarity=0.130 Sum_probs=48.6
Q ss_pred cceEeecCCeEEEEEEEccCC----CCeEEEee---------------CCEecc-CC----CCcEEEe--cCCEEEEEEc
Q psy16859 88 TMMSVALGEDISFSFRLAGSP----KPKVTWMK---------------GIKDIT-TS----SRTMTET--VNDYVRLTLK 141 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p----~~~~~W~~---------------~~~~~~-~~----~~~~~~~--~~~~~~l~i~ 141 (168)
..+.+..|+.+.|.|...... ...+.|.+ ++.... .. .|..+.. .....++.|.
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~ 85 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH 85 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence 356788999999999986532 34699943 222221 10 1222111 1234689999
Q ss_pred cCCCCCCeeEEEEEEcCCc
Q psy16859 142 RATDDENGTYFIVARNIYG 160 (168)
Q Consensus 142 ~~~~~d~g~y~C~~~n~~g 160 (168)
+++.+|.|.|+|.+.|.-+
T Consensus 86 nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 86 NLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred cCCcccCEEEEEEEEcCCC
Confidence 9999999999999999754
No 249
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.76 E-value=1.3e-07 Score=52.92 Aligned_cols=37 Identities=22% Similarity=0.453 Sum_probs=30.5
Q ss_pred CEEEEEEcCCCCCCCeEEEEEEEc-ccceeeEEEEEEE
Q psy16859 30 NLHTLILSGVTAEEAGKYTCRVSN-EYGYTETFARVDV 66 (168)
Q Consensus 30 ~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~l~v 66 (168)
+..+|+|.+++.+|+|.|.|.+.. ..|.......|.|
T Consensus 60 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 60 EDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred CceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEe
Confidence 457999999999999999999875 5567766777766
No 250
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.76 E-value=1.1e-07 Score=52.52 Aligned_cols=67 Identities=21% Similarity=0.343 Sum_probs=45.4
Q ss_pred CCeEEEEEEEccCCCCeEEEeeCCEeccCC--------------CCcE-EEecCCEEEEEEccCCCCCCeeEEEEEEcCC
Q psy16859 95 GEDISFSFRLAGSPKPKVTWMKGIKDITTS--------------SRTM-TETVNDYVRLTLKRATDDENGTYFIVARNIY 159 (168)
Q Consensus 95 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~--------------~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 159 (168)
|++|+|.|.........+.|++........ ..+. ........+|.|.+++.+|+|.|+|.+....
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 678999999877666689999854321110 0000 0011122689999999999999999999876
Q ss_pred ce
Q psy16859 160 GS 161 (168)
Q Consensus 160 g~ 161 (168)
|.
T Consensus 81 ~~ 82 (92)
T cd05741 81 GV 82 (92)
T ss_pred Cc
Confidence 43
No 251
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.75 E-value=7.6e-08 Score=53.73 Aligned_cols=70 Identities=11% Similarity=0.212 Sum_probs=47.6
Q ss_pred ecCCeEEEEEEEcc-CCCCeEEEeeCCEecc--C-----------CCCc--EEEecCCEEEEEEccCCCCCCeeEEEEEE
Q psy16859 93 ALGEDISFSFRLAG-SPKPKVTWMKGIKDIT--T-----------SSRT--MTETVNDYVRLTLKRATDDENGTYFIVAR 156 (168)
Q Consensus 93 ~~g~~~~l~C~~~~-~p~~~~~W~~~~~~~~--~-----------~~~~--~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 156 (168)
..|++|+|.|.... .....+.|++....+. . ..++ +........+|.|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 36899999998764 4455699997543211 0 0011 11122334789999999999999999999
Q ss_pred cCCcee
Q psy16859 157 NIYGSD 162 (168)
Q Consensus 157 n~~g~~ 162 (168)
+..|..
T Consensus 82 ~~~~~~ 87 (97)
T cd05775 82 TKNGVT 87 (97)
T ss_pred cCCCCe
Confidence 887655
No 252
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.72 E-value=2.1e-07 Score=53.13 Aligned_cols=73 Identities=18% Similarity=0.309 Sum_probs=46.0
Q ss_pred cCCeEEEEEEEccCC----------CCeEEEeeCC--Eecc----------CC----CCcEEE---ecCCEEEEEEccCC
Q psy16859 94 LGEDISFSFRLAGSP----------KPKVTWMKGI--KDIT----------TS----SRTMTE---TVNDYVRLTLKRAT 144 (168)
Q Consensus 94 ~g~~~~l~C~~~~~p----------~~~~~W~~~~--~~~~----------~~----~~~~~~---~~~~~~~l~i~~~~ 144 (168)
.|++++|.|.....+ ...+.|++.. .... .. .++... ......+|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 478999999987533 2469999842 1100 01 111111 11234689999999
Q ss_pred CCCCeeEEEEEEcCCceeeEEE
Q psy16859 145 DDENGTYFIVARNIYGSDRAFV 166 (168)
Q Consensus 145 ~~d~g~y~C~~~n~~g~~~~~~ 166 (168)
.+|+|.|.|.+..........+
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v 102 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTV 102 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEE
Confidence 9999999999987644444333
No 253
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.71 E-value=2.8e-07 Score=52.31 Aligned_cols=39 Identities=18% Similarity=0.415 Sum_probs=32.7
Q ss_pred CCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEE
Q psy16859 29 NNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVI 67 (168)
Q Consensus 29 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 67 (168)
.+..+|+|.+++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus 65 ~~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 65 PGDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred CCcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEE
Confidence 456799999999999999999999876666667777774
No 254
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.68 E-value=5.5e-07 Score=48.71 Aligned_cols=65 Identities=14% Similarity=0.264 Sum_probs=44.1
Q ss_pred EEEEEEEcc-CCCCeEEEeeCCEeccCCCCcEEEecCC-----EEEEEEccCCCCCCeeEEEEEEcCCcee
Q psy16859 98 ISFSFRLAG-SPKPKVTWMKGIKDITTSSRTMTETVND-----YVRLTLKRATDDENGTYFIVARNIYGSD 162 (168)
Q Consensus 98 ~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 162 (168)
+.|.|.+.+ +|.+.+.|++++..+............. .+.|.+.....++...|+|.+.+.....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 689999987 5888999999998876543211111111 1345555556667789999999976433
No 255
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.67 E-value=3.8e-07 Score=49.27 Aligned_cols=64 Identities=16% Similarity=0.257 Sum_probs=43.5
Q ss_pred EEEEEEEcc-CCCCeEEEeeCCEeccCCCCcEEEecC-----CEEEEEEccCCCCCCeeEEEEEEcCCce
Q psy16859 98 ISFSFRLAG-SPKPKVTWMKGIKDITTSSRTMTETVN-----DYVRLTLKRATDDENGTYFIVARNIYGS 161 (168)
Q Consensus 98 ~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 161 (168)
++|.|.+.| +|...+.|++++..+............ ..+.|.+....+++...|+|.+.|..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 679999987 777889999999987543221111111 1245666655566777999999987543
No 256
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.64 E-value=8.5e-07 Score=51.20 Aligned_cols=73 Identities=18% Similarity=0.196 Sum_probs=47.4
Q ss_pred cceEeecCCeEEEEEEEccCC----CCeEEEeeCCE------ec---------c-CCCCcE----EEe--cCCEEEEEEc
Q psy16859 88 TMMSVALGEDISFSFRLAGSP----KPKVTWMKGIK------DI---------T-TSSRTM----TET--VNDYVRLTLK 141 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p----~~~~~W~~~~~------~~---------~-~~~~~~----~~~--~~~~~~l~i~ 141 (168)
..+.+..|+.++|.|...... ...+.|++... .+ . ...++. ... .....+|.|.
T Consensus 6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 85 (116)
T cd05715 6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIH 85 (116)
T ss_pred CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEe
Confidence 456788999999999986432 24599986321 00 0 011111 111 1123689999
Q ss_pred cCCCCCCeeEEEEEEcCCc
Q psy16859 142 RATDDENGTYFIVARNIYG 160 (168)
Q Consensus 142 ~~~~~d~g~y~C~~~n~~g 160 (168)
+++.+|+|.|.|.+.|.-.
T Consensus 86 ~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 86 NLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eCCcccCEEEEEEEEeCCC
Confidence 9999999999999998644
No 257
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.63 E-value=1.5e-07 Score=50.38 Aligned_cols=54 Identities=39% Similarity=0.705 Sum_probs=38.2
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccce-eeEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGY-TETFARVDV 66 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v 66 (168)
+|.+.+.|++++..+... .. .+.+.+++.+|.|.|+|.+.+..+. ....+.|+|
T Consensus 26 ~p~~~~~w~~~~~~~~~~----------~~--~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 26 NPPPQVQWYKNGSPINSS----------QN--GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp SSSSEEEEEETTEEEEEE----------SS--EEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ccceeeeeeeeeeeeeee----------ee--eeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 367899999998877311 11 2777889999999999999986543 233455543
No 258
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.63 E-value=7.7e-07 Score=49.96 Aligned_cols=47 Identities=28% Similarity=0.380 Sum_probs=33.8
Q ss_pred CceEEEec-CCCEEEEEEcCCCCCCCeEEEEEEEc-ccceeeEEEEEEE
Q psy16859 20 PRFKYIED-SNNLHTLILSGVTAEEAGKYTCRVSN-EYGYTETFARVDV 66 (168)
Q Consensus 20 ~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~l~v 66 (168)
+|.....+ ..+..+|+|.+++.+|+|.|.|.+.+ +.|.......|.|
T Consensus 51 ~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 51 GRVRFETPNPIADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred CcEEEeCCCCCCceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 34444432 23467899999999999999999987 5666555666665
No 259
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.63 E-value=4.7e-07 Score=50.63 Aligned_cols=70 Identities=16% Similarity=0.184 Sum_probs=47.9
Q ss_pred eEeecCCeEEEEEEEcc-CCCCeEEEeeCCEe-----c--------cCCCCcEEEe--cCCEEEEEEccCCCCCCeeEEE
Q psy16859 90 MSVALGEDISFSFRLAG-SPKPKVTWMKGIKD-----I--------TTSSRTMTET--VNDYVRLTLKRATDDENGTYFI 153 (168)
Q Consensus 90 ~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~~~-----~--------~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C 153 (168)
+.+.+|++++|.|.... .....+.|++.... + ....++.... .....+|.|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 45789999999999765 34567999974321 1 0112233221 1234689999999999999999
Q ss_pred EEEcCC
Q psy16859 154 VARNIY 159 (168)
Q Consensus 154 ~~~n~~ 159 (168)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 988754
No 260
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.62 E-value=2.6e-07 Score=51.61 Aligned_cols=47 Identities=26% Similarity=0.376 Sum_probs=35.5
Q ss_pred CceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEc-ccceeeEEEEEEE
Q psy16859 20 PRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSN-EYGYTETFARVDV 66 (168)
Q Consensus 20 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~l~v 66 (168)
+|........+..+|.|.+++.+|+|.|.|.+.+ +.|.....+.|.|
T Consensus 51 ~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 51 ERVTFKNPSFEDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred CcEEEcCCCCCcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 4444443224457999999999999999999998 5777666777776
No 261
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.62 E-value=6.3e-07 Score=51.75 Aligned_cols=70 Identities=20% Similarity=0.385 Sum_probs=49.3
Q ss_pred cceEeecCCeEEEEEEEccC-CCCeEEEeeCC--Ee---c---------cCCCCcEEEe--cCCEEEEEEccCCCCCCee
Q psy16859 88 TMMSVALGEDISFSFRLAGS-PKPKVTWMKGI--KD---I---------TTSSRTMTET--VNDYVRLTLKRATDDENGT 150 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~-p~~~~~W~~~~--~~---~---------~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~ 150 (168)
..+.+..|++++|.|..... ....+.|++.. .. + ....++.... .....+|.|.+++.+|+|.
T Consensus 7 ~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~ 86 (116)
T cd07706 7 PDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAK 86 (116)
T ss_pred CceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 46778899999999998753 45569999732 11 0 0112333321 2345789999999999999
Q ss_pred EEEEEEc
Q psy16859 151 YFIVARN 157 (168)
Q Consensus 151 y~C~~~n 157 (168)
|.|.+..
T Consensus 87 Y~C~~~~ 93 (116)
T cd07706 87 YFCALST 93 (116)
T ss_pred EEEEEEC
Confidence 9999985
No 262
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.61 E-value=5.3e-07 Score=50.90 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCCCeEEEEEEEccc
Q psy16859 32 HTLILSGVTAEEAGKYTCRVSNEY 55 (168)
Q Consensus 32 ~~l~i~~~~~~d~G~Y~C~~~~~~ 55 (168)
++|.|.+++.+|+|.|+|.+.+..
T Consensus 70 gSL~I~~v~~~D~G~Y~~~v~~~~ 93 (105)
T cd05774 70 GSLLIQNVTQKDTGFYTLQTITTN 93 (105)
T ss_pred CcEEEecCCcccCEEEEEEEEeCC
Confidence 389999999999999999998875
No 263
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.57 E-value=2.8e-06 Score=48.66 Aligned_cols=48 Identities=23% Similarity=0.310 Sum_probs=37.0
Q ss_pred CceEEEec--CCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEE
Q psy16859 20 PRFKYIED--SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVI 67 (168)
Q Consensus 20 ~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 67 (168)
.|..+... ..+..+|.|.+++.+|+|.|.|.+.+..........|.|.
T Consensus 65 gRv~l~~~~~~~g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 65 GRVSVPSHPEDQGDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred CcEEeeccCCcCCceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 45554432 2356899999999999999999999887777777777774
No 264
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.57 E-value=5.3e-07 Score=51.31 Aligned_cols=48 Identities=19% Similarity=0.265 Sum_probs=36.3
Q ss_pred CceEEEec--CCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEE
Q psy16859 20 PRFKYIED--SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVI 67 (168)
Q Consensus 20 ~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 67 (168)
.|..+... ..+..+|.|.+++.+|+|.|.|.+............|.|.
T Consensus 58 gRvsl~~~~~~~~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 58 GRVSLPGYPKNRYNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred cEEEeecCCCCCceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence 45555442 1356899999999999999999999866556667777774
No 265
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.56 E-value=1.2e-06 Score=45.20 Aligned_cols=66 Identities=30% Similarity=0.468 Sum_probs=46.6
Q ss_pred EEEEEEEccCCCCeEEEeeCCEeccCCCCc----EEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceee
Q psy16859 98 ISFSFRLAGSPKPKVTWMKGIKDITTSSRT----MTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDR 163 (168)
Q Consensus 98 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~ 163 (168)
+.|.|.+.+.+...+.|++++......... ..........|.+..+...|.|.|.|.+.+..+...
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 70 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGTVS 70 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCcCcEE
Confidence 468899988777889999987665433211 111122346799999999999999999998764433
No 266
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.55 E-value=1.9e-06 Score=49.27 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=32.2
Q ss_pred CCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEE
Q psy16859 29 NNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVI 67 (168)
Q Consensus 29 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 67 (168)
.+..+|+|.+++.+|+|.|.|.+..........+.|.|.
T Consensus 69 ~~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 69 RGDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred CCcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 456789999999999999999998766666667777774
No 267
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.55 E-value=1.1e-06 Score=47.51 Aligned_cols=54 Identities=15% Similarity=0.298 Sum_probs=34.7
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCC----EEEEEEcCCCCCCCeEEEEEEEcccc
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNN----LHTLILSGVTAEEAGKYTCRVSNEYG 56 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~ 56 (168)
||.++|.|+++++.+.. .. .......++ ...|.+.....++.+.|+|.+.|...
T Consensus 12 ~P~~~v~W~~~~~~l~~-~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l 69 (82)
T cd05761 12 KPAATIRWFKGDKELKG-VK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPAL 69 (82)
T ss_pred CcCCeEEEEECCEEccC-ce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhc
Confidence 69999999999998842 21 111111121 23466655556667799999998753
No 268
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.54 E-value=1.8e-06 Score=47.75 Aligned_cols=37 Identities=27% Similarity=0.540 Sum_probs=30.7
Q ss_pred CCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcc
Q psy16859 18 SSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNE 54 (168)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 54 (168)
.++||......+...+|+|.+++.+|+|.|.|.+...
T Consensus 48 ~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 48 KDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 4678887763366789999999999999999999753
No 269
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.54 E-value=2.2e-06 Score=47.48 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=45.5
Q ss_pred CeEEEEEEEccCC-CCeEEEeeCCE----ecc-----------CC--CCcEEE-ecCCEEEEEEccCCCCCCeeEEEEEE
Q psy16859 96 EDISFSFRLAGSP-KPKVTWMKGIK----DIT-----------TS--SRTMTE-TVNDYVRLTLKRATDDENGTYFIVAR 156 (168)
Q Consensus 96 ~~~~l~C~~~~~p-~~~~~W~~~~~----~~~-----------~~--~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~ 156 (168)
++++|.|.....+ ...+.|.+... .+. .. .+.... ......+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 3578999976433 33599987321 111 00 111111 11224689999999999999999986
Q ss_pred c-CCceeeEEEE
Q psy16859 157 N-IYGSDRAFVT 167 (168)
Q Consensus 157 n-~~g~~~~~~~ 167 (168)
+ +.|+.++.+.
T Consensus 81 tfP~G~~~~~~~ 92 (96)
T cd05887 81 TFPLGNTQSSTT 92 (96)
T ss_pred eCCCCCeeEEEE
Confidence 5 7888876654
No 270
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.54 E-value=2.2e-06 Score=48.10 Aligned_cols=32 Identities=22% Similarity=0.163 Sum_probs=26.7
Q ss_pred EEEEEEccCCCCCCeeEEEEEEc-CCceeeEEE
Q psy16859 135 YVRLTLKRATDDENGTYFIVARN-IYGSDRAFV 166 (168)
Q Consensus 135 ~~~l~i~~~~~~d~g~y~C~~~n-~~g~~~~~~ 166 (168)
..+|.|.+++.+|+|.|.|.+.+ +.|+.++.+
T Consensus 63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~ 95 (100)
T cd05888 63 DGALILRNAVQADEGKYKCRVITFPAGNFEAEL 95 (100)
T ss_pred ceEEEEecCccccceEEEEEEEeCCCCCeeeEE
Confidence 46899999999999999999998 667655444
No 271
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.53 E-value=9.9e-07 Score=49.89 Aligned_cols=66 Identities=20% Similarity=0.324 Sum_probs=44.5
Q ss_pred eecCCeEEEEEEEccCCCCeEEEeeCCEe----c------cC------------CCCcEEEecCCEEEEEEccCCCCCCe
Q psy16859 92 VALGEDISFSFRLAGSPKPKVTWMKGIKD----I------TT------------SSRTMTETVNDYVRLTLKRATDDENG 149 (168)
Q Consensus 92 ~~~g~~~~l~C~~~~~p~~~~~W~~~~~~----~------~~------------~~~~~~~~~~~~~~l~i~~~~~~d~g 149 (168)
+..|+.++|.|.........+.|++.... + .. ..++..........|.|.+++.+|+|
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg 82 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG 82 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence 56899999999986554566999973321 0 00 01111112234467999999999999
Q ss_pred eEEEEEEc
Q psy16859 150 TYFIVARN 157 (168)
Q Consensus 150 ~y~C~~~n 157 (168)
.|.|.+.+
T Consensus 83 tY~Ca~~~ 90 (104)
T cd05720 83 YYFCSVAS 90 (104)
T ss_pred EEEEEEcc
Confidence 99999874
No 272
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.53 E-value=1.2e-06 Score=49.75 Aligned_cols=68 Identities=16% Similarity=0.360 Sum_probs=45.1
Q ss_pred EeecCCeEEEEEEEccC-CCCeEEEeeCCEe-----c------cC-----------CCCcEEE--ecCCEEEEEEccCCC
Q psy16859 91 SVALGEDISFSFRLAGS-PKPKVTWMKGIKD-----I------TT-----------SSRTMTE--TVNDYVRLTLKRATD 145 (168)
Q Consensus 91 ~~~~g~~~~l~C~~~~~-p~~~~~W~~~~~~-----~------~~-----------~~~~~~~--~~~~~~~l~i~~~~~ 145 (168)
.+..|++++|.|...+. ....+.|++.... + .. ..++... .......|.|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 46789999999998653 3457999973221 0 00 1122221 112235799999999
Q ss_pred CCCeeEEEEEEcC
Q psy16859 146 DENGTYFIVARNI 158 (168)
Q Consensus 146 ~d~g~y~C~~~n~ 158 (168)
+|+|.|.|...+.
T Consensus 82 ~Dsg~YyCa~~~~ 94 (107)
T cd07700 82 EDSGTYFCMTVGS 94 (107)
T ss_pred HHCEEEEEeEcCC
Confidence 9999999998643
No 273
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.52 E-value=1.9e-06 Score=49.25 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=35.1
Q ss_pred CceEEEec--CCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEE
Q psy16859 20 PRFKYIED--SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVI 67 (168)
Q Consensus 20 ~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 67 (168)
.|+.+... ..+..+|+|.+++.+|+|.|.|.+.+..........|.|.
T Consensus 60 ~R~sl~~~~~~~~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 60 DRVSLPNYPAIPSDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred CeEEecccCCCCCCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 36655441 2456799999999999999999999765555556666663
No 274
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.52 E-value=1.9e-06 Score=47.75 Aligned_cols=47 Identities=26% Similarity=0.338 Sum_probs=35.3
Q ss_pred CceEEEecCCCEEEEEEcCCCCCCCeEEEEEEE-cccceeeEEEEEEE
Q psy16859 20 PRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVS-NEYGYTETFARVDV 66 (168)
Q Consensus 20 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~~~l~v 66 (168)
+|........+..+|.|.+++.+|+|.|.|.+. .+.|....+..|.|
T Consensus 48 ~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 48 GRVSFKNYSLLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred CcEEEcCCCCCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence 355443222445699999999999999999986 45788877887776
No 275
>KOG3515|consensus
Probab=98.51 E-value=6.7e-07 Score=65.65 Aligned_cols=139 Identities=19% Similarity=0.235 Sum_probs=87.9
Q ss_pred CCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeE-EEEEEEEeccCCCcccCCCC
Q psy16859 2 VKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET-FARVDVINVSSGAVKHEKPA 80 (168)
Q Consensus 2 p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~v~~~~~~~~~~~~~~ 80 (168)
|.+.+.||++++.+. .+.....+ .+|.......+..+.|.|.+.|..+.... ...+.+..++
T Consensus 36 p~~~~eW~h~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~p---------- 98 (741)
T KOG3515|consen 36 PEIDVEWYHSTSGEH---GRYATIAD----PTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYPP---------- 98 (741)
T ss_pred CCcceEEEecCcccc---cccccccC----CceeeecchhhhhhhhhhhhcccccCceecceeeccccCc----------
Confidence 778999999988763 33333322 26888888888889999999998655433 4555554322
Q ss_pred eEEecCCcceEeecCCeEEEEEEEc--cCCCCeEEEeeCCEeccCCC--CcEE------EecCCEEEEEEccCCCCCCee
Q psy16859 81 MFLTRPDTMMSVALGEDISFSFRLA--GSPKPKVTWMKGIKDITTSS--RTMT------ETVNDYVRLTLKRATDDENGT 150 (168)
Q Consensus 81 ~~~~~~~~~~~~~~g~~~~l~C~~~--~~p~~~~~W~~~~~~~~~~~--~~~~------~~~~~~~~l~i~~~~~~d~g~ 150 (168)
.... .........+..+.+.|... +.|.+.+.|..+........ .... ........+.+......+.|.
T Consensus 99 a~~~-~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~ 177 (741)
T KOG3515|consen 99 ACLP-ELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGN 177 (741)
T ss_pred cccc-cccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCce
Confidence 1111 11233455778899999654 46777899998776433211 1110 010112346666677889999
Q ss_pred EEEEEEcC
Q psy16859 151 YFIVARNI 158 (168)
Q Consensus 151 y~C~~~n~ 158 (168)
|+|.+.|.
T Consensus 178 ~tC~A~nr 185 (741)
T KOG3515|consen 178 YTCPANNR 185 (741)
T ss_pred eEcccccc
Confidence 99999994
No 276
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.51 E-value=2.6e-06 Score=48.48 Aligned_cols=32 Identities=22% Similarity=0.187 Sum_probs=26.0
Q ss_pred EEEEEEccCCCCCCeeEEEEEEcCCceeeEEE
Q psy16859 135 YVRLTLKRATDDENGTYFIVARNIYGSDRAFV 166 (168)
Q Consensus 135 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~ 166 (168)
..+|.|.+++.+|+|.|.|.+..........+
T Consensus 71 ~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v 102 (110)
T cd05902 71 NASLVLSRLRYSDSGTYRCEVVLGINDEQDTV 102 (110)
T ss_pred eEEEEECCCCHHHCEEEEEEEEECCcccEEEE
Confidence 46899999999999999999998654444443
No 277
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.50 E-value=1.8e-06 Score=46.24 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=41.3
Q ss_pred CCCceEEEEECCEecCCCCCceEEEec--CCCEEEEEEcCCCCCCCeEEEEEEEcccce-eeEEEEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIED--SNNLHTLILSGVTAEEAGKYTCRVSNEYGY-TETFARVDVI 67 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~ 67 (168)
.|++.|.||++++++.... ....... -.-.++|.|..-..+|...|+|.+.|..-. ......|.|.
T Consensus 12 kP~A~I~W~k~~~~l~~~~-~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 12 KPAATIRWFKGNKELTGKS-TVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred CCCCEEEEEECCEECcCcc-cceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 4899999999999984321 1110111 012456888766777777999999987532 3335555553
No 278
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.50 E-value=2e-06 Score=47.99 Aligned_cols=38 Identities=24% Similarity=0.384 Sum_probs=29.3
Q ss_pred CCEEEEEEcCCCCCCCeEEEEEEEccccee-eEEEEEEE
Q psy16859 29 NNLHTLILSGVTAEEAGKYTCRVSNEYGYT-ETFARVDV 66 (168)
Q Consensus 29 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v 66 (168)
....+|+|.+++.+|+|.|.|.+....+.. ...+.|.|
T Consensus 58 ~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 58 QNDYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI 96 (97)
T ss_pred CCceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence 345689999999999999999998776544 33555555
No 279
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.49 E-value=6e-07 Score=49.54 Aligned_cols=25 Identities=28% Similarity=0.612 Sum_probs=22.6
Q ss_pred EEEEEcCCCCCCCeEEEEEEEcccc
Q psy16859 32 HTLILSGVTAEEAGKYTCRVSNEYG 56 (168)
Q Consensus 32 ~~l~i~~~~~~d~G~Y~C~~~~~~~ 56 (168)
.+|.|.+++.+|+|.|.|.+....+
T Consensus 57 ~sL~I~~l~~~DsG~Y~c~v~~~~~ 81 (92)
T cd05741 57 GSLLIQNLTKEDSGTYTLQIISTNG 81 (92)
T ss_pred ceEEEccCCchhcEEEEEEEEcCCC
Confidence 5899999999999999999987653
No 280
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.47 E-value=3.5e-06 Score=47.01 Aligned_cols=72 Identities=21% Similarity=0.273 Sum_probs=44.4
Q ss_pred CCeEEEEEEEccCCC-CeEEEeeCCE----ecc---C--C----C----CcEEE-ecCCEEEEEEccCCCCCCeeEEEEE
Q psy16859 95 GEDISFSFRLAGSPK-PKVTWMKGIK----DIT---T--S----S----RTMTE-TVNDYVRLTLKRATDDENGTYFIVA 155 (168)
Q Consensus 95 g~~~~l~C~~~~~p~-~~~~W~~~~~----~~~---~--~----~----~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~ 155 (168)
|++++|.|....... -.+.|++... .+. . . . +.... ......+|.|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 678999998654332 2599987421 100 0 0 0 11110 1112367999999999999999998
Q ss_pred Ec-CCceeeEEE
Q psy16859 156 RN-IYGSDRAFV 166 (168)
Q Consensus 156 ~n-~~g~~~~~~ 166 (168)
.. +.|+.+..+
T Consensus 81 ~~~p~g~~~~~~ 92 (97)
T cd05846 81 NTFPDGSKSGTM 92 (97)
T ss_pred EeCCCCCeeeEE
Confidence 74 566655433
No 281
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.47 E-value=1.1e-06 Score=49.30 Aligned_cols=70 Identities=13% Similarity=0.125 Sum_probs=45.3
Q ss_pred EeecCCeEEEEEEEcc-CC-CCeEEEeeCCEeccCCCC--cEEEe-cCC---EEEEEEccCCCCCCeeEEEEEEcCCc
Q psy16859 91 SVALGEDISFSFRLAG-SP-KPKVTWMKGIKDITTSSR--TMTET-VND---YVRLTLKRATDDENGTYFIVARNIYG 160 (168)
Q Consensus 91 ~~~~g~~~~l~C~~~~-~p-~~~~~W~~~~~~~~~~~~--~~~~~-~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g 160 (168)
....+..++|.|.+.| +| ...+.|++++..+..... ..... .+. .+.|.+....+.+...|+|.+.+..-
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL 90 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence 3446778999999998 55 457999999988753211 11111 111 14566666666567799999998653
No 282
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.46 E-value=8.7e-06 Score=46.48 Aligned_cols=69 Identities=17% Similarity=0.327 Sum_probs=43.9
Q ss_pred EeecCCeEEEEEEEcc-CCC-CeEEEeeCCEeccCCCCcEEEecCC-----EEEEEEccCCCCCCeeEEEEEEcCC
Q psy16859 91 SVALGEDISFSFRLAG-SPK-PKVTWMKGIKDITTSSRTMTETVND-----YVRLTLKRATDDENGTYFIVARNIY 159 (168)
Q Consensus 91 ~~~~g~~~~l~C~~~~-~p~-~~~~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~y~C~~~n~~ 159 (168)
....|+.++|.|.+.| .|. ..+.|++++..+............+ .+.|.+.....++.-.|+|.+.+..
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHRT 92 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeCC
Confidence 3457888999999998 453 5799999999876432222111221 2345555544433346999999865
No 283
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.46 E-value=5.7e-06 Score=46.24 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=27.8
Q ss_pred EEEEEccCCCCCCeeEEEEEEc-CCceeeEEEE
Q psy16859 136 VRLTLKRATDDENGTYFIVARN-IYGSDRAFVT 167 (168)
Q Consensus 136 ~~l~i~~~~~~d~g~y~C~~~n-~~g~~~~~~~ 167 (168)
.+|.|.+++.+|.|.|+|.+.+ +.|+.+..+.
T Consensus 63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~ 95 (99)
T cd05886 63 GTISLSRLELEDEGVYICEFATFPTGNRESQLN 95 (99)
T ss_pred ceEEEcCCccccCEEEEEEEEeCCCCCeEEEEE
Confidence 6899999999999999999999 7887666554
No 284
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.46 E-value=1.7e-06 Score=46.79 Aligned_cols=55 Identities=13% Similarity=0.258 Sum_probs=35.9
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCC----EEEEEEcCCCCCCCeEEEEEEEcccc
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNN----LHTLILSGVTAEEAGKYTCRVSNEYG 56 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~ 56 (168)
||.++|.|+++|+.+.... ........++ ...|.|.....+|...|+|.+.+...
T Consensus 12 ~P~~~ItW~k~g~~l~~~~-~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 12 KPAANIKWRKGDQELEGAP-TSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred cCCCEeEEEECCEECCCcc-eeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 6999999999999884322 1111111122 23466656667777899999998753
No 285
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.45 E-value=2.2e-06 Score=47.83 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=31.0
Q ss_pred CCEEEEEEcCCCCCCCeEEEEEEEc-ccceeeEEEEEEE
Q psy16859 29 NNLHTLILSGVTAEEAGKYTCRVSN-EYGYTETFARVDV 66 (168)
Q Consensus 29 ~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~l~v 66 (168)
.+..+|+|.+++.+|+|.|.|.+.. +.|.....+.|+|
T Consensus 58 ~~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 58 LNSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred CCccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence 4567899999999999999999874 4677666777776
No 286
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.45 E-value=3.5e-06 Score=48.22 Aligned_cols=71 Identities=23% Similarity=0.342 Sum_probs=49.9
Q ss_pred cceEeecCCeEEEEEEEc-cCCCCeEEEeeCCE-----ecc---C-----------CCCcEEEec--CCEEEEEEccCCC
Q psy16859 88 TMMSVALGEDISFSFRLA-GSPKPKVTWMKGIK-----DIT---T-----------SSRTMTETV--NDYVRLTLKRATD 145 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~~~-----~~~---~-----------~~~~~~~~~--~~~~~l~i~~~~~ 145 (168)
..+.+..|+++.|.|... ......+.|++... .+. . ..+...... ....+|.|.+++.
T Consensus 9 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~ 88 (114)
T PF07686_consen 9 SPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQP 88 (114)
T ss_dssp SEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESG
T ss_pred CeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCc
Confidence 567889999999999998 45566799997321 111 0 011221221 2346899999999
Q ss_pred CCCeeEEEEEEcC
Q psy16859 146 DENGTYFIVARNI 158 (168)
Q Consensus 146 ~d~g~y~C~~~n~ 158 (168)
+|+|.|.|.+...
T Consensus 89 ~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 89 SDSGTYFCQVSTS 101 (114)
T ss_dssp GGEEEEEEEEEES
T ss_pred CcCEEEEEEEEEC
Confidence 9999999999986
No 287
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.44 E-value=6.5e-06 Score=47.16 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=27.5
Q ss_pred EEEEEEccCCCCCCeeEEEEEEcCCceeeEEEE
Q psy16859 135 YVRLTLKRATDDENGTYFIVARNIYGSDRAFVT 167 (168)
Q Consensus 135 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 167 (168)
..+|.|.+++.+|+|.|.|.+.+........++
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~ 110 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVS 110 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcccEEEEE
Confidence 468999999999999999999987766655543
No 288
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.43 E-value=7e-06 Score=45.54 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=29.1
Q ss_pred EEEEEEccCCCCCCeeEEEEEEc-CCceeeEEEEC
Q psy16859 135 YVRLTLKRATDDENGTYFIVARN-IYGSDRAFVTV 168 (168)
Q Consensus 135 ~~~l~i~~~~~~d~g~y~C~~~n-~~g~~~~~~~v 168 (168)
..+|.|.+++.+|+|.|+|.+.. +.|...+.+.|
T Consensus 59 d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~ 93 (96)
T cd05889 59 DMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV 93 (96)
T ss_pred ccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence 36899999999999999999976 68888877654
No 289
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.42 E-value=3.2e-06 Score=51.78 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=50.3
Q ss_pred cceEeecCCeEEEEEEEc-cCCCCeEEEeeCCEecc----------C--CCCcE-EEecCCEEEEEEccCCCCCCeeEEE
Q psy16859 88 TMMSVALGEDISFSFRLA-GSPKPKVTWMKGIKDIT----------T--SSRTM-TETVNDYVRLTLKRATDDENGTYFI 153 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~~~~~~----------~--~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C 153 (168)
..+.+.+|++++|.|... +...+.++|.+....+. . .++.. .........|.|.+++.+|+|.|+|
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C 102 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC 102 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence 456788999999999984 55677899998532111 1 11222 1222234689999999999999999
Q ss_pred EEEc-CCc
Q psy16859 154 VARN-IYG 160 (168)
Q Consensus 154 ~~~n-~~g 160 (168)
.+.- +.|
T Consensus 103 ~F~tfp~G 110 (189)
T PHA02987 103 IFNTLLSK 110 (189)
T ss_pred EEEecCCC
Confidence 9875 344
No 290
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.40 E-value=8e-06 Score=45.32 Aligned_cols=42 Identities=21% Similarity=0.389 Sum_probs=29.6
Q ss_pred CceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcc-cceeeEE
Q psy16859 20 PRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNE-YGYTETF 61 (168)
Q Consensus 20 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 61 (168)
+|...........+|+|.+++.+|+|.|.|.+... .|.....
T Consensus 48 ~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~ 90 (96)
T cd05889 48 GRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKV 90 (96)
T ss_pred CeEEEecCCCCccEEEEcCCCcccCEEEEEEEEeCCCCCeEEE
Confidence 45554433234568999999999999999998754 4554443
No 291
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.39 E-value=1e-05 Score=43.51 Aligned_cols=68 Identities=15% Similarity=0.162 Sum_probs=46.6
Q ss_pred EeecCCeEEEEEEEccCCC--CeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeE
Q psy16859 91 SVALGEDISFSFRLAGSPK--PKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRA 164 (168)
Q Consensus 91 ~~~~g~~~~l~C~~~~~p~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~ 164 (168)
.+..|++++|.|.....+. +.+.|...+...-. ....+..+|.+..+...|+|..+|.+.-......+
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~ 79 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTL 79 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccce------eccCCccEEEeceeCcccCCEEEEEEEECceEEEE
Confidence 4779999999999865444 48999863332111 01123348999999999999999999744333333
No 292
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.38 E-value=1.4e-05 Score=46.38 Aligned_cols=71 Identities=18% Similarity=0.196 Sum_probs=46.9
Q ss_pred cceEeecCCeEEEEEEEccCC------CCeEEEeeCCEe------c---cCC--------CCcEEE--ecCCEEEEEEcc
Q psy16859 88 TMMSVALGEDISFSFRLAGSP------KPKVTWMKGIKD------I---TTS--------SRTMTE--TVNDYVRLTLKR 142 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p------~~~~~W~~~~~~------~---~~~--------~~~~~~--~~~~~~~l~i~~ 142 (168)
..+.+..|+.++|.|...... ...+.|++.... + ... .++... ......+|.|.+
T Consensus 7 ~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~ 86 (119)
T cd05712 7 KSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISD 86 (119)
T ss_pred CEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEcc
Confidence 457788999999999865321 245899974321 0 000 122221 123347899999
Q ss_pred CCCCCCeeEEEEEEcC
Q psy16859 143 ATDDENGTYFIVARNI 158 (168)
Q Consensus 143 ~~~~d~g~y~C~~~n~ 158 (168)
++.+|+|.|.|.+...
T Consensus 87 l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 87 AQPEDSGKYFFRVELG 102 (119)
T ss_pred CChhhCeEEEEEEEcC
Confidence 9999999999998764
No 293
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.35 E-value=3e-06 Score=48.31 Aligned_cols=54 Identities=24% Similarity=0.385 Sum_probs=38.1
Q ss_pred CCceEEEEECCE---e---c-------CCCCCceEEEec-CCCEEEEEEcCCCCCCCeEEEEEEEccc
Q psy16859 2 VKPEVIWLRGNT---P---L-------PKSSPRFKYIED-SNNLHTLILSGVTAEEAGKYTCRVSNEY 55 (168)
Q Consensus 2 p~p~v~W~~~~~---~---~-------~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 55 (168)
+.+.+.||+... + + .....|+.+... .....+|+|.+++.+|+|.|.|.+.+..
T Consensus 26 ~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~ 93 (109)
T cd04983 26 TFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSESG 93 (109)
T ss_pred CccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence 356899998531 0 0 013456765543 2467899999999999999999998653
No 294
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.35 E-value=5.6e-06 Score=44.74 Aligned_cols=54 Identities=15% Similarity=0.278 Sum_probs=34.7
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCC----EEEEEEcCCCCCCCeEEEEEEEccc
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNN----LHTLILSGVTAEEAGKYTCRVSNEY 55 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~ 55 (168)
||.++|+|++||+.+.. ..........++ ..+|.+.....++...|+|.+.+..
T Consensus 12 ~P~~~itW~kng~~l~~-~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 12 KPAADIRWFKNDKEIKD-VKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES 69 (83)
T ss_pred cCCCEEEEEECCEECcC-ceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence 68899999999998742 211111111111 2357776555667779999998764
No 295
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.34 E-value=6.9e-06 Score=45.45 Aligned_cols=70 Identities=14% Similarity=0.140 Sum_probs=44.6
Q ss_pred cCCeEEEEEEEcc-CCC-CeEEEeeCCEeccCCCC--cEEEecCC----EEEEEEccCCCCCCeeEEEEEEcCCceee
Q psy16859 94 LGEDISFSFRLAG-SPK-PKVTWMKGIKDITTSSR--TMTETVND----YVRLTLKRATDDENGTYFIVARNIYGSDR 163 (168)
Q Consensus 94 ~g~~~~l~C~~~~-~p~-~~~~W~~~~~~~~~~~~--~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~g~~~ 163 (168)
.+..++|.|.+.| .|. ..+.|.+++..+..... ......++ .+.|.+....+.+...|+|.+.+......
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~ 90 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTFE 90 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeeee
Confidence 4566899999998 553 57999999987633211 01111111 13455665555567799999998765544
No 296
>KOG3515|consensus
Probab=98.34 E-value=2.8e-06 Score=62.52 Aligned_cols=157 Identities=12% Similarity=0.160 Sum_probs=89.2
Q ss_pred CCCceEEEEECCEecCCCCCceEEEe-c-CCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEE--EEEEEEeccCCCccc
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIE-D-SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF--ARVDVINVSSGAVKH 76 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~-~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~--~~l~v~~~~~~~~~~ 76 (168)
+|.+.+.|+++.+.......-.+... . ......+........|.|.|+|.+.+.......+ +.+.+..
T Consensus 328 ~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~-------- 399 (741)
T KOG3515|consen 328 KPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLP-------- 399 (741)
T ss_pred CCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceeccccC--------
Confidence 57889999996654421111100000 0 0112346666778899999999998876433333 3344421
Q ss_pred CCCCeEEecCCcceEeecCCeEEEEEEEccCC-CCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEE
Q psy16859 77 EKPAMFLTRPDTMMSVALGEDISFSFRLAGSP-KPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVA 155 (168)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 155 (168)
.|..+.... ..+...+.......-.+.+.| .+.+.|.+++..+...............-....++...|.|.|.|.+
T Consensus 400 -~p~~L~~~~-~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~ta 477 (741)
T KOG3515|consen 400 -SPAFLVRHK-TAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTA 477 (741)
T ss_pred -Cchhhhhcc-cceeeccCccccccCcccCCCcccchhheecceecccccCceEEeeccccccccceeeeccCCcceeee
Confidence 122222222 233344444444333333555 56799998887776655433322222223445568889999999999
Q ss_pred EcCCceeeEEEE
Q psy16859 156 RNIYGSDRAFVT 167 (168)
Q Consensus 156 ~n~~g~~~~~~~ 167 (168)
.|..|.....+.
T Consensus 478 tns~gg~~~~~~ 489 (741)
T KOG3515|consen 478 TNSPGGAQAYLL 489 (741)
T ss_pred ccCCCceeeEEe
Confidence 999998876653
No 297
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.33 E-value=1.3e-05 Score=44.33 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=39.1
Q ss_pred CCeEEEEEEEccC-CCC-eEEEeeCCEeccCCCC-cEEEec-C-CEEEEEEccCCCCCCeeEEEEEEcCCc
Q psy16859 95 GEDISFSFRLAGS-PKP-KVTWMKGIKDITTSSR-TMTETV-N-DYVRLTLKRATDDENGTYFIVARNIYG 160 (168)
Q Consensus 95 g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~~~~-~~~~~~-~-~~~~l~i~~~~~~d~g~y~C~~~n~~g 160 (168)
++.+.|.|.+.|. |.. .+.|.+++........ ...... . .+.......+...+...|+|.+.+..-
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence 6789999999984 543 7999999863322211 111111 1 122222223344477899999998654
No 298
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.33 E-value=3.2e-05 Score=42.84 Aligned_cols=70 Identities=21% Similarity=0.240 Sum_probs=42.0
Q ss_pred ecCCeEEEEEEEcc-CCCC-eEEEeeCCEeccCCCC-cEEEecCC--EEEEEEccCCCCCCeeEEEEEEcCCcee
Q psy16859 93 ALGEDISFSFRLAG-SPKP-KVTWMKGIKDITTSSR-TMTETVND--YVRLTLKRATDDENGTYFIVARNIYGSD 162 (168)
Q Consensus 93 ~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~-~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 162 (168)
..++.++|.|.+.| .|.. .+.|++++..+..... .......+ +.......+...+...|+|.+.+.....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~~ 86 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQE 86 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCCC
Confidence 36788999999998 4543 6999999987654311 11111111 2111122233445668999999875443
No 299
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.31 E-value=1e-05 Score=42.83 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=39.9
Q ss_pred EEEEEEEccC-CC-CeEEEeeCCEeccCCCCc-E-EEecC-C---EEEEEEccCCCCCCeeEEEEEEcCC
Q psy16859 98 ISFSFRLAGS-PK-PKVTWMKGIKDITTSSRT-M-TETVN-D---YVRLTLKRATDDENGTYFIVARNIY 159 (168)
Q Consensus 98 ~~l~C~~~~~-p~-~~~~W~~~~~~~~~~~~~-~-~~~~~-~---~~~l~i~~~~~~d~g~y~C~~~n~~ 159 (168)
++|.|.+.|. |. ..+.|++++..+...... . ..... . .+.|.+....+++...|+|.+.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 6899999984 54 579999999864322111 1 11111 1 1456666666777789999998754
No 300
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.28 E-value=3.7e-06 Score=48.03 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=27.1
Q ss_pred CceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcc
Q psy16859 20 PRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNE 54 (168)
Q Consensus 20 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 54 (168)
.|+..........+|+|.+++.+|+|.|.|.+.+.
T Consensus 60 ~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 60 DRFSASRPSLTRSSLTIKSAEPEDSAVYLCASSLG 94 (110)
T ss_pred CceEEECcCCCccEEEECCCChhhCEEEEEEeeCC
Confidence 45655443235678999999999999999999864
No 301
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.28 E-value=1.4e-05 Score=49.13 Aligned_cols=67 Identities=19% Similarity=0.364 Sum_probs=45.3
Q ss_pred CceEEEEECCEec-----------CCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEc-ccc-eeeEEEEEEEEec
Q psy16859 3 KPEVIWLRGNTPL-----------PKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSN-EYG-YTETFARVDVINV 69 (168)
Q Consensus 3 ~p~v~W~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~-~~~~~~~l~v~~~ 69 (168)
.+.|.|+|....+ ....+|+.+........+|+|.+++.+|+|.|.|.+.- +.| ......-|+|...
T Consensus 45 ~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 45 SILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred cceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEch
Confidence 5789999964222 11123555322224456899999999999999999863 456 6666788888653
No 302
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.25 E-value=1.4e-05 Score=43.77 Aligned_cols=67 Identities=25% Similarity=0.361 Sum_probs=42.3
Q ss_pred CCeEEEEEEEc-cCCCCeEEEeeCCEeccCCCCcEEEec-CC----EEEEEEccCCCCCCeeEEEEEEcCCce
Q psy16859 95 GEDISFSFRLA-GSPKPKVTWMKGIKDITTSSRTMTETV-ND----YVRLTLKRATDDENGTYFIVARNIYGS 161 (168)
Q Consensus 95 g~~~~l~C~~~-~~p~~~~~W~~~~~~~~~~~~~~~~~~-~~----~~~l~i~~~~~~d~g~y~C~~~n~~g~ 161 (168)
|+.+.+.|.+. ++|.+.+.|+.++..+........... .. .+.|.+.....++...++|.+.+..-.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 67999999765 588999999998876621111111111 11 145666554455677999999997644
No 303
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.24 E-value=6.3e-06 Score=46.59 Aligned_cols=55 Identities=29% Similarity=0.416 Sum_probs=38.1
Q ss_pred CCceEEEEECCE-----ec-----------CCCCCceEEEecC-CCEEEEEEcCCCCCCCeEEEEEEEcccc
Q psy16859 2 VKPEVIWLRGNT-----PL-----------PKSSPRFKYIEDS-NNLHTLILSGVTAEEAGKYTCRVSNEYG 56 (168)
Q Consensus 2 p~p~v~W~~~~~-----~~-----------~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 56 (168)
+...+.|++... .+ .....|+.+.... ....+|+|.+++.+|+|.|.|.+.+..+
T Consensus 20 ~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 20 SSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred CcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence 456899998432 11 0123456555442 2678999999999999999999987654
No 304
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.23 E-value=2e-05 Score=45.56 Aligned_cols=70 Identities=20% Similarity=0.267 Sum_probs=46.5
Q ss_pred cceEeecCCeEEEEEEEccCC--CCeEEEeeCC--E-e--c---cC-----------CCCcEEEecC--CEEEEEEccCC
Q psy16859 88 TMMSVALGEDISFSFRLAGSP--KPKVTWMKGI--K-D--I---TT-----------SSRTMTETVN--DYVRLTLKRAT 144 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~~--~-~--~---~~-----------~~~~~~~~~~--~~~~l~i~~~~ 144 (168)
....+..|+.++|.|...+.. ...+.|++.. . + + .. ..++...... ....|.|.++.
T Consensus 5 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 84 (117)
T cd04981 5 GPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLT 84 (117)
T ss_pred CCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCC
Confidence 356788999999999876433 4569999732 1 1 1 00 1122222111 23579999999
Q ss_pred CCCCeeEEEEEEc
Q psy16859 145 DDENGTYFIVARN 157 (168)
Q Consensus 145 ~~d~g~y~C~~~n 157 (168)
.+|+|.|.|.+..
T Consensus 85 ~~Dsa~YyCa~~~ 97 (117)
T cd04981 85 PEDTAVYYCARGL 97 (117)
T ss_pred HHHCEEEEEEEEc
Confidence 9999999999875
No 305
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.23 E-value=4.7e-06 Score=45.93 Aligned_cols=48 Identities=17% Similarity=0.310 Sum_probs=34.4
Q ss_pred CCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcc
Q psy16859 2 VKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNE 54 (168)
Q Consensus 2 p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 54 (168)
|.....|+|+|...... + .........|.|.+++.+|+|.|.|...+.
T Consensus 28 ~~~~f~l~k~g~~~~~~--~---~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 28 GAVEYRLYREGSTFAVK--K---PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCCEEEEEECCCCcccc--c---cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 56678899988754211 1 111134457999999999999999999875
No 306
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.21 E-value=1e-05 Score=45.48 Aligned_cols=70 Identities=16% Similarity=0.267 Sum_probs=43.7
Q ss_pred eecCCeEEEEEEEcc-CCC-CeEEEeeCCEeccCCCCcE---EEec---CC---EEEEEEccCCCCCCeeEEEEEEcCCc
Q psy16859 92 VALGEDISFSFRLAG-SPK-PKVTWMKGIKDITTSSRTM---TETV---ND---YVRLTLKRATDDENGTYFIVARNIYG 160 (168)
Q Consensus 92 ~~~g~~~~l~C~~~~-~p~-~~~~W~~~~~~~~~~~~~~---~~~~---~~---~~~l~i~~~~~~d~g~y~C~~~n~~g 160 (168)
+..+..++|.|.+.| .|. ..+.|.+++..+....... .... +. .+.|.+..-.+.+...|+|.+.+...
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 445778999999998 443 3589999998765432111 1110 11 13455655445566789999998654
Q ss_pred e
Q psy16859 161 S 161 (168)
Q Consensus 161 ~ 161 (168)
.
T Consensus 93 ~ 93 (102)
T cd05768 93 P 93 (102)
T ss_pred C
Confidence 3
No 307
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.21 E-value=6.3e-06 Score=45.72 Aligned_cols=56 Identities=23% Similarity=0.346 Sum_probs=35.2
Q ss_pred CCC-ceEEEEECCEecCCCCCceEEEecCCC----EEEEEEcCCCCCCCeEEEEEEEcccc
Q psy16859 1 YVK-PEVIWLRGNTPLPKSSPRFKYIEDSNN----LHTLILSGVTAEEAGKYTCRVSNEYG 56 (168)
Q Consensus 1 ~p~-p~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~ 56 (168)
||. ++|+|+++|..+.............++ .+.|.|.....+|.|.|+|.+.+...
T Consensus 26 ~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 26 YPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred ECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 464 689999999988432210122222122 23466666666799999999998654
No 308
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.20 E-value=1.7e-05 Score=41.98 Aligned_cols=55 Identities=27% Similarity=0.435 Sum_probs=33.3
Q ss_pred CCC-ceEEEEECCEecCCCCCceEEEecCCC----EEEEEEcCCCCCCCeEEEEEEEccc
Q psy16859 1 YVK-PEVIWLRGNTPLPKSSPRFKYIEDSNN----LHTLILSGVTAEEAGKYTCRVSNEY 55 (168)
Q Consensus 1 ~p~-p~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~ 55 (168)
||+ .+|.|+|||+++...........+.++ .+.|.|.....++...|+|.+.+..
T Consensus 12 ~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 12 YPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 577 599999999875322111111111122 3357776666677789999998753
No 309
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=98.19 E-value=2.2e-05 Score=45.03 Aligned_cols=72 Identities=14% Similarity=0.185 Sum_probs=45.2
Q ss_pred EeecCCeEEEEEEEcc-CCC-CeEEEeeCCEeccCCCC---cEEEec-CC---EEEEEEccCCCCC-CeeEEEEEEcCCc
Q psy16859 91 SVALGEDISFSFRLAG-SPK-PKVTWMKGIKDITTSSR---TMTETV-ND---YVRLTLKRATDDE-NGTYFIVARNIYG 160 (168)
Q Consensus 91 ~~~~g~~~~l~C~~~~-~p~-~~~~W~~~~~~~~~~~~---~~~~~~-~~---~~~l~i~~~~~~d-~g~y~C~~~n~~g 160 (168)
.+..+..++|.|.+.+ .|. ..+.|.+++..+..... ...... +. .+.|.+....+.+ ...|+|.+.+...
T Consensus 14 e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~ 93 (115)
T cd05769 14 EIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGG 93 (115)
T ss_pred HhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCC
Confidence 3445677999999998 454 47999999987654321 111111 11 2456666655544 5689999998654
Q ss_pred ee
Q psy16859 161 SD 162 (168)
Q Consensus 161 ~~ 162 (168)
..
T Consensus 94 ~~ 95 (115)
T cd05769 94 TD 95 (115)
T ss_pred cc
Confidence 43
No 310
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.15 E-value=1.4e-05 Score=46.15 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=27.3
Q ss_pred CCceEEEecCC-CEEEEEEcCCCCCCCeEEEEEEEc
Q psy16859 19 SPRFKYIEDSN-NLHTLILSGVTAEEAGKYTCRVSN 53 (168)
Q Consensus 19 ~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~ 53 (168)
..|+.+..... ...+|+|.+++.+|+|.|.|.+..
T Consensus 63 ~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 63 KNKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred CCCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEec
Confidence 35666554422 578999999999999999999864
No 311
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.15 E-value=2.9e-05 Score=43.39 Aligned_cols=34 Identities=29% Similarity=0.540 Sum_probs=27.6
Q ss_pred CceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcc
Q psy16859 20 PRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNE 54 (168)
Q Consensus 20 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 54 (168)
+|+..... ....+|+|.+++.+|+|.|.|.+.+.
T Consensus 52 ~rf~~~~~-~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 85 (98)
T cd04984 52 DRFSGSKS-GNTASLTISGAQTEDEADYYCQVWDS 85 (98)
T ss_pred CCEEEEcc-CCEEEEEECCCChhhCEEEEEEEccC
Confidence 46666555 56788999999999999999998753
No 312
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.14 E-value=1.7e-05 Score=42.42 Aligned_cols=59 Identities=19% Similarity=0.376 Sum_probs=36.6
Q ss_pred eEEEEEEEccCCCC--eEEEeeCCE--e---cc-------------CCCCcEEEec--CCEEEEEEccCCCCCCeeEEEE
Q psy16859 97 DISFSFRLAGSPKP--KVTWMKGIK--D---IT-------------TSSRTMTETV--NDYVRLTLKRATDDENGTYFIV 154 (168)
Q Consensus 97 ~~~l~C~~~~~p~~--~~~W~~~~~--~---~~-------------~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~ 154 (168)
++.|.|.+.....+ .+.|++... . +. ...++..... ....+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 36788887754433 688886331 0 00 0122222222 3446899999999999999996
Q ss_pred E
Q psy16859 155 A 155 (168)
Q Consensus 155 ~ 155 (168)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 313
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.14 E-value=2.8e-05 Score=39.88 Aligned_cols=54 Identities=37% Similarity=0.583 Sum_probs=37.1
Q ss_pred CCceEEEEECCEecCCCCCc--eEEEecCCCEEEEEEcCCCCCCCeEEEEEEEccc
Q psy16859 2 VKPEVIWLRGNTPLPKSSPR--FKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEY 55 (168)
Q Consensus 2 p~p~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 55 (168)
|.+.+.|++++......... ............|.|.++..+|.|.|.|.+.+..
T Consensus 11 ~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 11 PPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 67899999988766322210 0011112445689999999999999999998764
No 314
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.14 E-value=2.3e-06 Score=45.04 Aligned_cols=23 Identities=48% Similarity=0.699 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCCCCeEEEEEEEc
Q psy16859 31 LHTLILSGVTAEEAGKYTCRVSN 53 (168)
Q Consensus 31 ~~~l~i~~~~~~d~G~Y~C~~~~ 53 (168)
..+|.|.++..+|.|.|+|.+.|
T Consensus 53 ~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 53 NSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEESSCCGGGTEEEEEEEEE
T ss_pred eeEEEEccCCHHhCcEEEEEEEC
Confidence 45899999999999999999975
No 315
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.12 E-value=2.9e-05 Score=43.37 Aligned_cols=53 Identities=25% Similarity=0.432 Sum_probs=36.9
Q ss_pred CceEEEEECCE-----ec-------CCCCCceEEEec-CCCEEEEEEcCCCCCCCeEEEEEEEccc
Q psy16859 3 KPEVIWLRGNT-----PL-------PKSSPRFKYIED-SNNLHTLILSGVTAEEAGKYTCRVSNEY 55 (168)
Q Consensus 3 ~p~v~W~~~~~-----~~-------~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 55 (168)
...+.|++... .+ .....|+.+... ..+.++|+|.+++.+|+|.|.|.+....
T Consensus 22 ~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 87 (98)
T cd05716 22 SYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGVGDDG 87 (98)
T ss_pred CcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEcccCC
Confidence 45689998541 11 122356665432 3567899999999999999999987653
No 316
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=98.11 E-value=0.00011 Score=40.70 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=39.4
Q ss_pred cCCeEEEEEEEcc-CC-CCeEEEeeCCEeccCCCCcE-EEecC-C-E---EEEEEccCCCCCCeeEEEEEEcCCc
Q psy16859 94 LGEDISFSFRLAG-SP-KPKVTWMKGIKDITTSSRTM-TETVN-D-Y---VRLTLKRATDDENGTYFIVARNIYG 160 (168)
Q Consensus 94 ~g~~~~l~C~~~~-~p-~~~~~W~~~~~~~~~~~~~~-~~~~~-~-~---~~l~i~~~~~~d~g~y~C~~~n~~g 160 (168)
.+...+|.|.+.| .| ...+.|.++|..+....... ..... . + ..|.+. ..+...|+|.+.+...
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~l 85 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWGL 85 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCCC
Confidence 4566899999998 45 35699999998765432111 11111 1 1 234443 3455689999998643
No 317
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.10 E-value=0.00013 Score=40.24 Aligned_cols=69 Identities=14% Similarity=0.144 Sum_probs=41.2
Q ss_pred eecCCeEEEEEEEcc-CC-CCeEEEeeCCEeccCCCCcEEEecCC--EEEEEEccCCCCCCeeEEEEEEcCCc
Q psy16859 92 VALGEDISFSFRLAG-SP-KPKVTWMKGIKDITTSSRTMTETVND--YVRLTLKRATDDENGTYFIVARNIYG 160 (168)
Q Consensus 92 ~~~g~~~~l~C~~~~-~p-~~~~~W~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~n~~g 160 (168)
+..|...+|.|.+.| .| ...+.|.++|..+............+ +.......+.+.+...|+|.+.+...
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~l 84 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNSM 84 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECCC
Confidence 345777799999998 44 44699999998876211111111211 12222223345566789999998643
No 318
>PHA02633 hypothetical protein; Provisional
Probab=98.08 E-value=2.2e-05 Score=39.01 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=31.5
Q ss_pred EEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEEe
Q psy16859 33 TLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVIN 68 (168)
Q Consensus 33 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 68 (168)
.|.|.++..+|+|.|.|.++|.......++.|.|..
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~ 54 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL 54 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence 699999999999999999998877777788888854
No 319
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.06 E-value=3.1e-05 Score=43.03 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=42.3
Q ss_pred EeecCCeEEEEEEEccC--C-CCeEEEeeCCEe-ccCCCCcEEEecC-CE---EEEEEccCCCCCCeeEEEEEEcCCce
Q psy16859 91 SVALGEDISFSFRLAGS--P-KPKVTWMKGIKD-ITTSSRTMTETVN-DY---VRLTLKRATDDENGTYFIVARNIYGS 161 (168)
Q Consensus 91 ~~~~g~~~~l~C~~~~~--p-~~~~~W~~~~~~-~~~~~~~~~~~~~-~~---~~l~i~~~~~~d~g~y~C~~~n~~g~ 161 (168)
.+..++.++|.|.+.|. | ...+.|.+++.. ............. .+ +.|.+....+.+.-.|+|.+.+..-.
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l~ 88 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDLP 88 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCCC
Confidence 35568899999999987 4 335999998642 2211111111111 11 34555555554556899999987543
No 320
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.06 E-value=3e-05 Score=44.77 Aligned_cols=29 Identities=21% Similarity=0.458 Sum_probs=24.7
Q ss_pred CCEEEEEEcCCCCCCCeEEEEEEEcccce
Q psy16859 29 NNLHTLILSGVTAEEAGKYTCRVSNEYGY 57 (168)
Q Consensus 29 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 57 (168)
.+.++|+|.+++.+|+|.|.|.+.+....
T Consensus 77 ~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 77 RKDASIVIHNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred CCeeEEEEeeCCcccCEEEEEEEEeCCCC
Confidence 44578999999999999999999976543
No 321
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.05 E-value=3.4e-05 Score=43.77 Aligned_cols=34 Identities=29% Similarity=0.390 Sum_probs=26.6
Q ss_pred CceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcc
Q psy16859 20 PRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNE 54 (168)
Q Consensus 20 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 54 (168)
.|+..... .....|+|.+++++|+|.|.|.+.+.
T Consensus 60 ~r~~~~~~-~~~~~L~I~~~~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 60 SRFSGSGS-GTDFTLTISRVEPEDAAVYYCQQYGT 93 (106)
T ss_pred CCEEEecc-CCEEEEEECCCChHHCEEEEEEEeCC
Confidence 35655433 55678999999999999999998653
No 322
>PHA03376 BARF1; Provisional
Probab=97.98 E-value=6.3e-05 Score=46.32 Aligned_cols=70 Identities=17% Similarity=0.194 Sum_probs=46.6
Q ss_pred ceEeecCCeEEEEEEEcc---CCCCeEEEeeCCE----e-ccC------------CCCcEEEecCCEEEEEEccCCCCCC
Q psy16859 89 MMSVALGEDISFSFRLAG---SPKPKVTWMKGIK----D-ITT------------SSRTMTETVNDYVRLTLKRATDDEN 148 (168)
Q Consensus 89 ~~~~~~g~~~~l~C~~~~---~p~~~~~W~~~~~----~-~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~ 148 (168)
.+....|+.+.|.|.... .+...+.|++... . +.. ..+..+....+..+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 456778999999998652 2344699999432 1 100 0011122223557899999999999
Q ss_pred eeEEEEEEcC
Q psy16859 149 GTYFIVARNI 158 (168)
Q Consensus 149 g~y~C~~~n~ 158 (168)
|.|+|.+.-.
T Consensus 100 GtY~C~fQkg 109 (221)
T PHA03376 100 GNYLCRMKLG 109 (221)
T ss_pred ceEEEEEEcC
Confidence 9999999863
No 323
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.94 E-value=6.4e-05 Score=41.86 Aligned_cols=78 Identities=18% Similarity=0.263 Sum_probs=45.4
Q ss_pred eEEecCCcceEeecCCeEEEEEEEcc-C-C-CCeEEEeeCCEeccCCCCcEEEe-cCCE---EEEEEccCCCCCCeeEEE
Q psy16859 81 MFLTRPDTMMSVALGEDISFSFRLAG-S-P-KPKVTWMKGIKDITTSSRTMTET-VNDY---VRLTLKRATDDENGTYFI 153 (168)
Q Consensus 81 ~~~~~~~~~~~~~~g~~~~l~C~~~~-~-p-~~~~~W~~~~~~~~~~~~~~~~~-~~~~---~~l~i~~~~~~d~g~y~C 153 (168)
+..+.|. ......+..++|.|.+.+ . | ...+.|.+++.. .......... .+.+ +.|.+..-.+.....|+|
T Consensus 6 V~l~pPs-~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC 83 (99)
T cd04986 6 LSLQRPA-LEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFAC 83 (99)
T ss_pred EEEECcC-hHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEE
Confidence 3344442 333446788999999998 4 4 346999998764 1111111111 1111 445555545555667999
Q ss_pred EEEcCCc
Q psy16859 154 VARNIYG 160 (168)
Q Consensus 154 ~~~n~~g 160 (168)
.+.++..
T Consensus 84 ~V~H~~l 90 (99)
T cd04986 84 TVTHPEG 90 (99)
T ss_pred EEECCCc
Confidence 9998755
No 324
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.92 E-value=0.00014 Score=39.17 Aligned_cols=57 Identities=18% Similarity=0.242 Sum_probs=35.2
Q ss_pred CCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 2 VKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 2 p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
|.+.|+|+..+..... ... .+..+|.+..+...|+|.++|.+..........+.+.|
T Consensus 29 p~~~i~w~~P~n~~~~------~~~--~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~V 85 (88)
T cd07694 29 PAFKVEWRGPGNKSKQ------ILN--QDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKV 85 (88)
T ss_pred CCccEEEeCCCCccce------ecc--CCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEE
Confidence 4558999864432211 000 12238999999999999999999765333333444444
No 325
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.92 E-value=0.00012 Score=39.57 Aligned_cols=65 Identities=23% Similarity=0.343 Sum_probs=43.0
Q ss_pred cCCeEEEEEEEcc-CCCC-eEEEeeCCEeccCCCCcEEEe--cCCE----EEEEEccCCCCCCeeEEEEEEcCCce
Q psy16859 94 LGEDISFSFRLAG-SPKP-KVTWMKGIKDITTSSRTMTET--VNDY----VRLTLKRATDDENGTYFIVARNIYGS 161 (168)
Q Consensus 94 ~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~~~--~~~~----~~l~i~~~~~~d~g~y~C~~~n~~g~ 161 (168)
.+..+.|.|.+.+ .|.. .+.|++++..+.......... ..+. +.|.+. +.+...|+|.+.+....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 4889999999987 5544 699999998876543222111 2222 334444 66666999999987544
No 326
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.87 E-value=9.7e-05 Score=42.14 Aligned_cols=35 Identities=29% Similarity=0.614 Sum_probs=27.0
Q ss_pred CceEEEec-CCCEEEEEEcCCCCCCCeEEEEEEEcc
Q psy16859 20 PRFKYIED-SNNLHTLILSGVTAEEAGKYTCRVSNE 54 (168)
Q Consensus 20 ~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 54 (168)
.++.+... .....+|.|.+++.+|+|.|.|.+...
T Consensus 66 ~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 66 GRFTFSGNGSQNNFSLTIKNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp TTEEEEEETTTTEEEEEESSESGGGEEEEEEEEEES
T ss_pred eeeeeeecccCCeEEEEECCCCcCcCEEEEEEEEEC
Confidence 34443333 245789999999999999999999876
No 327
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.86 E-value=3.5e-05 Score=44.42 Aligned_cols=29 Identities=21% Similarity=0.443 Sum_probs=25.0
Q ss_pred CCEEEEEEcCCCCCCCeEEEEEEEcccce
Q psy16859 29 NNLHTLILSGVTAEEAGKYTCRVSNEYGY 57 (168)
Q Consensus 29 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 57 (168)
.+.++|+|.+++.+|+|.|.|.+.+..+.
T Consensus 76 ~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 76 RRDASILIWQLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred CCceEEEEeeCChhhCEEEEEEEEeCCCC
Confidence 34678999999999999999999987654
No 328
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.85 E-value=0.00031 Score=39.02 Aligned_cols=65 Identities=15% Similarity=0.190 Sum_probs=38.1
Q ss_pred eecCCeEEEEEEEcc-CC-CCeEEEeeCCEeccCCCC-cEEEecCCE----EEEEEccCCCCCCeeEEEEEEcC
Q psy16859 92 VALGEDISFSFRLAG-SP-KPKVTWMKGIKDITTSSR-TMTETVNDY----VRLTLKRATDDENGTYFIVARNI 158 (168)
Q Consensus 92 ~~~g~~~~l~C~~~~-~p-~~~~~W~~~~~~~~~~~~-~~~~~~~~~----~~l~i~~~~~~d~g~y~C~~~n~ 158 (168)
...+..++|.|.+.| .| ...+.|.++|..+..... .......+. +.|.+..-. ....|+|.+.+.
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~ 84 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHE 84 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEEC
Confidence 344667999999998 45 346999999987643211 111111221 234444322 233599999984
No 329
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.82 E-value=9e-05 Score=41.36 Aligned_cols=55 Identities=18% Similarity=0.313 Sum_probs=34.0
Q ss_pred CCCce--EEEEECCEecCCCCCceEEEe--cCCCEEEEEEcCCCCCCCeEEEEEEEcccce
Q psy16859 1 YVKPE--VIWLRGNTPLPKSSPRFKYIE--DSNNLHTLILSGVTAEEAGKYTCRVSNEYGY 57 (168)
Q Consensus 1 ~p~p~--v~W~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 57 (168)
+|.+. |.||+++..+... .+.... ......+|++..-+.+|...|+|.+.+..+.
T Consensus 29 ~P~a~L~i~W~rG~~~l~~~--~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 29 APRQNLTVVLLRGNETLSRQ--PFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP 87 (100)
T ss_pred CCCCcEEEEEeeCCEEcccc--eeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence 47776 7999999988421 221110 1123457777655555555999999876543
No 330
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.81 E-value=0.0003 Score=40.22 Aligned_cols=53 Identities=21% Similarity=0.332 Sum_probs=30.8
Q ss_pred CCC-ceEEEEECCEecCCCCCceEEEecCCC----EEEEEEcCCCCCCCe-EEEEEEEccc
Q psy16859 1 YVK-PEVIWLRGNTPLPKSSPRFKYIEDSNN----LHTLILSGVTAEEAG-KYTCRVSNEY 55 (168)
Q Consensus 1 ~p~-p~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G-~Y~C~~~~~~ 55 (168)
||. .+|+|++||+.+...........+ ++ ...|.+.. ...|.| .|+|.+.+..
T Consensus 34 ~P~~i~v~W~kng~~~~~~~~~~~p~~d-~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 34 SPRDITVKWLKNGNELSAEQPNITPEGD-SVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred eCCCCEEEEEECCEECcccccceeeCCC-CCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 575 699999999998432222211111 21 23455554 344444 5999999864
No 331
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.81 E-value=0.00031 Score=38.85 Aligned_cols=68 Identities=12% Similarity=0.161 Sum_probs=41.8
Q ss_pred eecCCeEEEEEEEcc-CCC--CeEEEeeCCEeccCCCCcEE---Ee-cCCEEEEEEccCCCCCCe-eEEEEEEcCCc
Q psy16859 92 VALGEDISFSFRLAG-SPK--PKVTWMKGIKDITTSSRTMT---ET-VNDYVRLTLKRATDDENG-TYFIVARNIYG 160 (168)
Q Consensus 92 ~~~g~~~~l~C~~~~-~p~--~~~~W~~~~~~~~~~~~~~~---~~-~~~~~~l~i~~~~~~d~g-~y~C~~~n~~g 160 (168)
...|..+++.|.+.+ .|. ..+.|+++...+........ .. ......+.+... .+|.| .|+|.|.-..+
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~l~ 87 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLHID 87 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEeec
Confidence 479999999999985 454 46999987665543321110 00 111234555554 66666 99999986543
No 332
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.80 E-value=0.00013 Score=36.96 Aligned_cols=53 Identities=19% Similarity=0.289 Sum_probs=35.3
Q ss_pred eecCCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcC
Q psy16859 92 VALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNI 158 (168)
Q Consensus 92 ~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 158 (168)
...|..|+|+|+... ..+.|.+++..+..... .+.+.+-. +++|.|.|.+.+.
T Consensus 4 sisGTtVtlTCP~~~---~~i~W~~n~~~~~g~~~----------~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 4 SISGTTVTVTCPLSG---DDIKWKKNDQVSQGSDE----------KYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EEeccEEEEECCCCC---CCceEEeCCccCCCCCc----------eEEeeccC-CCCceEEEEeCCC
Confidence 457899999997642 22899998855543111 23333333 7899999999754
No 333
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.78 E-value=0.00017 Score=39.40 Aligned_cols=56 Identities=23% Similarity=0.359 Sum_probs=33.4
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCC---EEEEEEcCCCCCCCeEEEEEEEcccc
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNN---LHTLILSGVTAEEAGKYTCRVSNEYG 56 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~~~~~~~ 56 (168)
||+|.|.|+.++..+.............+. .+.|.+..-..++...++|.+.+..-
T Consensus 27 ~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 27 YPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp BS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred ECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence 799999999999776111111111111111 24577766556677789999998653
No 334
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.77 E-value=0.00019 Score=41.60 Aligned_cols=35 Identities=31% Similarity=0.548 Sum_probs=27.5
Q ss_pred CceEEEec-CCCEEEEEEcCCCCCCCeEEEEEEEcc
Q psy16859 20 PRFKYIED-SNNLHTLILSGVTAEEAGKYTCRVSNE 54 (168)
Q Consensus 20 ~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 54 (168)
+|+.+..+ ..+.++|+|.+++.+|+|.|.|.+...
T Consensus 67 gR~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 67 GRFRLLGDLGKKNCSLLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccEEEecCCCCCEEEEEEccCChhhCeEEEEEEEcC
Confidence 46666432 355789999999999999999998754
No 335
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.75 E-value=0.00017 Score=41.57 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=28.3
Q ss_pred CCceEEEec-CCCEEEEEEcCCCCCCCeEEEEEEEcc
Q psy16859 19 SPRFKYIED-SNNLHTLILSGVTAEEAGKYTCRVSNE 54 (168)
Q Consensus 19 ~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 54 (168)
.+|+.+..+ .....+|+|.+++.+|+|.|.|.+...
T Consensus 58 ~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~ 94 (116)
T cd07706 58 KGRYSVNFQKAQKSISLTISALQLEDSAKYFCALSTL 94 (116)
T ss_pred CCeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEECC
Confidence 357776532 355789999999999999999999853
No 336
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.72 E-value=0.00024 Score=40.37 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=25.3
Q ss_pred CceEEEec-CCCEEEEEEcCCCCCCCeEEEEEEEc
Q psy16859 20 PRFKYIED-SNNLHTLILSGVTAEEAGKYTCRVSN 53 (168)
Q Consensus 20 ~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~ 53 (168)
.++..... ......|+|.+++.+|+|.|.|...+
T Consensus 59 ~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~ 93 (107)
T cd07700 59 EKFSIRVTSDSSRYRLHINRVKPEDSGTYFCMTVG 93 (107)
T ss_pred CcEEEEEECCCCEEEEEECCCCHHHCEEEEEeEcC
Confidence 35554322 24467899999999999999999863
No 337
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.71 E-value=0.00062 Score=37.77 Aligned_cols=66 Identities=14% Similarity=0.216 Sum_probs=40.5
Q ss_pred cCCeEEEEEEEcc-CC-CCeEEEeeCCEeccCCC-Cc-EEEe-cCCE---EEEEEccCCCCCCeeEEEEEEcCCc
Q psy16859 94 LGEDISFSFRLAG-SP-KPKVTWMKGIKDITTSS-RT-MTET-VNDY---VRLTLKRATDDENGTYFIVARNIYG 160 (168)
Q Consensus 94 ~g~~~~l~C~~~~-~p-~~~~~W~~~~~~~~~~~-~~-~~~~-~~~~---~~l~i~~~~~~d~g~y~C~~~n~~g 160 (168)
.+..++|.|.+.| .| ...+.|.+++.. .... .. .... .+.+ ..|.+....+.....|+|.+.+...
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~~ 88 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPST 88 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCCC
Confidence 4567899999998 44 346999999987 3221 10 1111 1222 3455555444445689999998653
No 338
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.69 E-value=0.0005 Score=38.15 Aligned_cols=54 Identities=15% Similarity=0.113 Sum_probs=31.7
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCC----EEEEEEcCCCCCCCeEEEEEEEccccee
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNN----LHTLILSGVTAEEAGKYTCRVSNEYGYT 58 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 58 (168)
+|+++|.|+++.. ...........++ .+.|.+.....+|...|+|.+.+..-..
T Consensus 28 kP~a~ItW~~~~~----~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~ 85 (95)
T cd05719 28 KPPATISWETTLG----GEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQE 85 (95)
T ss_pred cCCCEEEEEeCCC----CcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence 6999999999711 1111111111122 2357776666666668999999875433
No 339
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=97.68 E-value=0.0001 Score=41.02 Aligned_cols=43 Identities=30% Similarity=0.520 Sum_probs=30.8
Q ss_pred ceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeE-EEEEEE
Q psy16859 21 RFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET-FARVDV 66 (168)
Q Consensus 21 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~v 66 (168)
|+....+ + .+|.|+.+++.|+|.|.-++.+..|.... .+.+.|
T Consensus 63 r~~F~~e-n--laLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 63 RFNFTSE-N--LALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp HEEEETT-T--TEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred eEeeecc-C--ceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 4444433 3 48999999999999999999998888744 455555
No 340
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.63 E-value=8.6e-05 Score=39.62 Aligned_cols=32 Identities=31% Similarity=0.549 Sum_probs=24.8
Q ss_pred CceEEEecC-CCEEEEEEcCCCCCCCeEEEEEE
Q psy16859 20 PRFKYIEDS-NNLHTLILSGVTAEEAGKYTCRV 51 (168)
Q Consensus 20 ~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~ 51 (168)
.|+...... .+..+|.|.+++.+|+|.|.|.+
T Consensus 49 ~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 49 GRVTISKDTSKNDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred CcEEEEecCcCCEEEEEEcCCCHHHCEEEEEcC
Confidence 455544432 56788999999999999999964
No 341
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.57 E-value=0.0015 Score=36.25 Aligned_cols=63 Identities=11% Similarity=0.107 Sum_probs=38.0
Q ss_pred CCeEEEEEEEc-cCCCCeEEEeeCCEeccCCCCcEEEe--cCC---EEEEEEccCCCCCCeeEEEEEEcCCc
Q psy16859 95 GEDISFSFRLA-GSPKPKVTWMKGIKDITTSSRTMTET--VND---YVRLTLKRATDDENGTYFIVARNIYG 160 (168)
Q Consensus 95 g~~~~l~C~~~-~~p~~~~~W~~~~~~~~~~~~~~~~~--~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g 160 (168)
.....+.|.+. |+|.+.+.|+++. .......... .+. .+.|.+.....++...|+|.+.|..-
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l 83 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTL 83 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence 34567889985 6899999999861 1111111111 111 24566655555556699999999763
No 342
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.55 E-value=0.00076 Score=37.25 Aligned_cols=55 Identities=22% Similarity=0.413 Sum_probs=28.9
Q ss_pred CCCc-eEEEEECCEecCCCCCceEEEecCCCEE-EEEEcCCCCCCCeEEEEEEEccc
Q psy16859 1 YVKP-EVIWLRGNTPLPKSSPRFKYIEDSNNLH-TLILSGVTAEEAGKYTCRVSNEY 55 (168)
Q Consensus 1 ~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~l~i~~~~~~d~G~Y~C~~~~~~ 55 (168)
||.. +|+|++++..+...........+.++.. ......+...+.+.|+|.+.+..
T Consensus 27 ~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 27 YPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred eCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 5665 9999999964322111111111212211 11222334457889999998764
No 343
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.53 E-value=0.0016 Score=36.05 Aligned_cols=63 Identities=10% Similarity=0.071 Sum_probs=38.3
Q ss_pred CeEEEEEEEc-cCCCCeEEEeeCCEeccCCCCcEEE--ecCC---EEEEEEccCCCCCCeeEEEEEEcCCce
Q psy16859 96 EDISFSFRLA-GSPKPKVTWMKGIKDITTSSRTMTE--TVND---YVRLTLKRATDDENGTYFIVARNIYGS 161 (168)
Q Consensus 96 ~~~~l~C~~~-~~p~~~~~W~~~~~~~~~~~~~~~~--~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~ 161 (168)
....+.|.+. +.|.+.+.|+++.... ...... ..+. .+.|.+.....+|...|+|.+.|..-.
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~---~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~ 84 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGN---ANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQ 84 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCC---eeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 3577889876 6889999999872111 111111 1111 245666555555666999999997633
No 344
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.47 E-value=0.00044 Score=38.29 Aligned_cols=48 Identities=21% Similarity=0.233 Sum_probs=30.5
Q ss_pred ceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEc
Q psy16859 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSN 53 (168)
Q Consensus 4 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 53 (168)
-.+.|||++...... .............+.|.+++.+|+|.|.|....
T Consensus 29 ~~f~l~k~g~~~~~~--~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 29 DRFILYKEGRSKPVL--HLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CEEEEEECCCCCCce--ecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 357899988653210 000000113345799999999999999999763
No 345
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.44 E-value=0.0069 Score=42.96 Aligned_cols=81 Identities=20% Similarity=0.203 Sum_probs=54.4
Q ss_pred CEEEEEEcCCCCCCCeEEEEEEEccc-cee--eEEEEEEEEeccCCCcccCCCCeEEecCCcceEeecCCeEEEEEEEcc
Q psy16859 30 NLHTLILSGVTAEEAGKYTCRVSNEY-GYT--ETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAG 106 (168)
Q Consensus 30 ~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 106 (168)
+...|.|.+++..++|.|+=.+.+.. +.. ...+.+.+ ..+|.+.+.+ ..+.+|+...-.|.+..
T Consensus 287 ~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~----------yr~PsVsV~p---~PVL~Ge~YkAtC~vA~ 353 (566)
T PHA03269 287 SDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMS----------YKRPNITVIG---DPVLLGNPYAAYCKVNK 353 (566)
T ss_pred CccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEE----------ecCCCccccC---CccccCCCceEEEEeee
Confidence 34579999999999999986655322 222 23444444 2344444433 34789999999999876
Q ss_pred -CCC--CeEEEeeCCEeccC
Q psy16859 107 -SPK--PKVTWMKGIKDITT 123 (168)
Q Consensus 107 -~p~--~~~~W~~~~~~~~~ 123 (168)
.|+ ..+.|+.++..+..
T Consensus 354 YYPp~SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 354 YYPPHSVIVKWTSNFGNIGK 373 (566)
T ss_pred ecCCCceEEEEEeCCcccCc
Confidence 343 25999999887764
No 346
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.43 E-value=0.00095 Score=39.80 Aligned_cols=55 Identities=25% Similarity=0.316 Sum_probs=31.0
Q ss_pred CCC-ceEEEEECCEecCC---CCCceE---EEecCCC----EEEEEEcCCCCCCCeEEEEEEEccc
Q psy16859 1 YVK-PEVIWLRGNTPLPK---SSPRFK---YIEDSNN----LHTLILSGVTAEEAGKYTCRVSNEY 55 (168)
Q Consensus 1 ~p~-p~v~W~~~~~~~~~---~~~~~~---~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~ 55 (168)
||. ++|.|++++..... ...... .....++ ...|.|.....++.+.|+|.+.+..
T Consensus 66 ~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 66 YPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred CCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 575 59999999854211 001111 1111122 2357776665566779999998753
No 347
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.43 E-value=0.00063 Score=38.16 Aligned_cols=55 Identities=22% Similarity=0.280 Sum_probs=31.3
Q ss_pred CC-CceEEEEECCEecCCCCCceEEEecCCC----EEEEEEcCCCCCCCeEEEEEEEccc
Q psy16859 1 YV-KPEVIWLRGNTPLPKSSPRFKYIEDSNN----LHTLILSGVTAEEAGKYTCRVSNEY 55 (168)
Q Consensus 1 ~p-~p~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~ 55 (168)
|| ..+|.|++||+.+.............++ ...|.+.....++...|+|.+.+..
T Consensus 30 yP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 30 YPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred ECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 45 5689999999987421110001111122 2345565544455678999998764
No 348
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.41 E-value=0.0014 Score=36.27 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=30.7
Q ss_pred CCC-ceEEEEECCEecCCCCCceEEEecCCC----EEEEEEcCCCCCCCeEEEEEEEccc
Q psy16859 1 YVK-PEVIWLRGNTPLPKSSPRFKYIEDSNN----LHTLILSGVTAEEAGKYTCRVSNEY 55 (168)
Q Consensus 1 ~p~-p~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~ 55 (168)
||. .+|.|++||+.+.............++ ...|.+..-...+...|+|.+.+..
T Consensus 27 yP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~ 86 (94)
T cd05847 27 TPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQG 86 (94)
T ss_pred ECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECC
Confidence 565 689999999886321111111111022 2245565444446678999998764
No 349
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.41 E-value=0.011 Score=41.73 Aligned_cols=114 Identities=16% Similarity=0.144 Sum_probs=69.5
Q ss_pred EEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEEeccCCCcccCCCCeEEecCCcceEeecCCeEEEEEEEcc-CCC-
Q psy16859 32 HTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAG-SPK- 109 (168)
Q Consensus 32 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~- 109 (168)
..|+|..++..++|.|+=...+..+.......++|.. ..+|.+.+.+ ..+.+|+...-.|.+.. .|+
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~--------yr~Psvsv~~---~PvL~Ge~y~A~C~aa~YYPp~ 266 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVST--------YNAPLVDLSV---HPSLKGENYRAVCVVASYFPHS 266 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEE--------ecCCcccccC---CccccCCCceEEEEeeeecCCC
Confidence 5699999999999999866655544444444445422 2344444433 34789999999999876 343
Q ss_pred -CeEEEeeCCEeccCCCC----cEEEecCC---EEEEEEccCCCC-CCeeEEEEEE
Q psy16859 110 -PKVTWMKGIKDITTSSR----TMTETVND---YVRLTLKRATDD-ENGTYFIVAR 156 (168)
Q Consensus 110 -~~~~W~~~~~~~~~~~~----~~~~~~~~---~~~l~i~~~~~~-d~g~y~C~~~ 156 (168)
..+.|+.++..+..... ......+. .++|.+...... .--.++|.+.
T Consensus 267 Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~ 322 (486)
T PHA03273 267 SVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIE 322 (486)
T ss_pred ceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEE
Confidence 25999999988772221 11111111 234555543332 2347899885
No 350
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.40 E-value=0.0013 Score=36.35 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=29.7
Q ss_pred CC-CceEEEEECCEecCCCCCceEEEecCCCEEE-EEEcCCCCCCCeEEEEEEEccc
Q psy16859 1 YV-KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHT-LILSGVTAEEAGKYTCRVSNEY 55 (168)
Q Consensus 1 ~p-~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-l~i~~~~~~d~G~Y~C~~~~~~ 55 (168)
|| .-+|.|++||..+. +........+.++... .....+...+...|+|.+.+..
T Consensus 28 yP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 28 HPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred eCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 44 34899999999874 2211112222133111 1112334567778999998753
No 351
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=97.40 E-value=0.013 Score=37.27 Aligned_cols=102 Identities=16% Similarity=0.222 Sum_probs=50.4
Q ss_pred eEEEEECCEecCCCCCceE--EEec--CCCEEEEEE-cCCCCCCCeEEEEEEE-cccceeeEEEEEEEEeccCCCcccCC
Q psy16859 5 EVIWLRGNTPLPKSSPRFK--YIED--SNNLHTLIL-SGVTAEEAGKYTCRVS-NEYGYTETFARVDVINVSSGAVKHEK 78 (168)
Q Consensus 5 ~v~W~~~~~~~~~~~~~~~--~~~~--~~~~~~l~i-~~~~~~d~G~Y~C~~~-~~~~~~~~~~~l~v~~~~~~~~~~~~ 78 (168)
.+.||.|+.++.....+.. ...+ ....++|++ .+...+..-..+|.+. +........++..+
T Consensus 8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~------------ 75 (211)
T PF02124_consen 8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATA------------ 75 (211)
T ss_pred EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeeccc------------
Confidence 7899999998853322222 2222 112455666 3233344457899875 32222222222222
Q ss_pred CCeEEecCCcceEeecCCeEEEEEEEccCCC--CeEEEeeCCEec
Q psy16859 79 PAMFLTRPDTMMSVALGEDISFSFRLAGSPK--PKVTWMKGIKDI 121 (168)
Q Consensus 79 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~~~~~ 121 (168)
.|.....|.-.+....| ...|.+..-|. ..+.|..++...
T Consensus 76 ~P~Vy~~P~vsv~F~~g---~AVC~A~CVP~~~v~l~W~v~d~~~ 117 (211)
T PF02124_consen 76 TPSVYPKPRVSVRFEDG---YAVCTARCVPRGNVTLRWSVGDDPS 117 (211)
T ss_pred ccceecCCEEEEEecCC---EEEEEcceeeCCCeEEEEEECCccC
Confidence 22333334333333334 33477665452 579999776543
No 352
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.38 E-value=0.0021 Score=35.67 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=33.8
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCC----EEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEE
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNN----LHTLILSGVTAEEAGKYTCRVSNEYGYTETFARV 64 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 64 (168)
.|+++|.|+++.... .........++ .+.|.+.....+|...|+|.+.+..-.....+.+
T Consensus 28 kPaa~IsW~~~~~g~----~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~ 91 (95)
T cd07703 28 RPPARISWSSTLGGN----ANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV 91 (95)
T ss_pred CCCcEEEEEcCCCCC----eeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence 489999999972111 01111111111 2357776666667779999999875444333333
No 353
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.38 E-value=0.0042 Score=35.50 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=43.2
Q ss_pred ceEeecCCeEEEEEEEccCCC---CeEEEeeCCEec-c--------------CCCCcE--EEecCCEEEEEEccCCCCCC
Q psy16859 89 MMSVALGEDISFSFRLAGSPK---PKVTWMKGIKDI-T--------------TSSRTM--TETVNDYVRLTLKRATDDEN 148 (168)
Q Consensus 89 ~~~~~~g~~~~l~C~~~~~p~---~~~~W~~~~~~~-~--------------~~~~~~--~~~~~~~~~l~i~~~~~~d~ 148 (168)
...+..|..++|.|...|... -.+.|++..... . ...++. .........|.+.+++.+|.
T Consensus 7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DT 86 (115)
T cd05721 7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQT 86 (115)
T ss_pred CeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHC
Confidence 345667888999999976432 358888732110 0 111111 12223446899999999999
Q ss_pred eeEEEEEE
Q psy16859 149 GTYFIVAR 156 (168)
Q Consensus 149 g~y~C~~~ 156 (168)
+.|.|...
T Consensus 87 a~Y~Ca~e 94 (115)
T cd05721 87 DIYFCKIE 94 (115)
T ss_pred eEEEEEee
Confidence 99999653
No 354
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.36 E-value=0.0017 Score=35.92 Aligned_cols=52 Identities=21% Similarity=0.343 Sum_probs=29.5
Q ss_pred CCCc-eEEEEECCEecCCCCCceEEEecCCC----EEEEEEcCCCCCCCeEEEEEEEccc
Q psy16859 1 YVKP-EVIWLRGNTPLPKSSPRFKYIEDSNN----LHTLILSGVTAEEAGKYTCRVSNEY 55 (168)
Q Consensus 1 ~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~ 55 (168)
||.. ++.|++||+.+...........+.++ ...|.+ ..++...|+|.+.+..
T Consensus 27 yP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~---~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 27 YPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLET---TPSRGDTYTCVVEHSS 83 (94)
T ss_pred cCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEeCC
Confidence 5666 89999999987432111111112122 123443 3456668999998764
No 355
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.33 E-value=0.00049 Score=38.88 Aligned_cols=32 Identities=31% Similarity=0.504 Sum_probs=25.2
Q ss_pred ceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEc
Q psy16859 21 RFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSN 53 (168)
Q Consensus 21 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 53 (168)
|+..... .....|+|.+++.+|+|.|.|.+..
T Consensus 59 rf~~~~~-~~~~~L~I~~~~~sDsgtY~Ca~~~ 90 (104)
T cd05720 59 RFSGSRS-SNSFVLTLKNFQKENEGYYFCSVAS 90 (104)
T ss_pred eEEEEec-CCEEEEEECCCCHHHCEEEEEEEcc
Confidence 4544334 4667899999999999999998763
No 356
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.31 E-value=0.0011 Score=36.72 Aligned_cols=71 Identities=13% Similarity=0.168 Sum_probs=42.8
Q ss_pred cceEeecCCeEEE-EEEEc-cCCCCeEEEeeCCEeccCCCCcEEEecCC---EEEEEEccCCCCCCeeEEEEEEcCC
Q psy16859 88 TMMSVALGEDISF-SFRLA-GSPKPKVTWMKGIKDITTSSRTMTETVND---YVRLTLKRATDDENGTYFIVARNIY 159 (168)
Q Consensus 88 ~~~~~~~g~~~~l-~C~~~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~ 159 (168)
....+.+|+.+.+ .|.+. |.|.+.+.|+.+....... .......+. .+.+.+.....+|.-.++|.+.+..
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~-~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSES-HSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccce-eeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence 3455678888888 88865 6899999999753221110 000011111 1355565555556669999999874
No 357
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=97.27 E-value=0.00065 Score=44.10 Aligned_cols=49 Identities=24% Similarity=0.531 Sum_probs=36.7
Q ss_pred CCceEEEEECC-EecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEccc
Q psy16859 2 VKPEVIWLRGN-TPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEY 55 (168)
Q Consensus 2 p~p~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 55 (168)
..|+..|...+ +.+ .+..+..+... +.|.+.+...+++|.|+|.+....
T Consensus 11 iDP~y~W~GP~g~~l-~gn~~~nIT~T----G~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPL-SGNSYVNITET----GKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCccc-CCCCeEEEccC----ceEEeeccccccCCceEEEEEEEe
Confidence 35899999854 445 44556665544 369999999999999999988654
No 358
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.25 E-value=0.022 Score=39.94 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=55.3
Q ss_pred EEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEEeccCCCcccCCCCeEEecCCcceEeecCCeEEEEEEEcc-CCCC
Q psy16859 32 HTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAG-SPKP 110 (168)
Q Consensus 32 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~ 110 (168)
..|.|..++...+|.|+=...+..+.......++|.. ..+|.+.+.+ ..+.+|+...-.|.+.. +|+.
T Consensus 182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~--------yr~Psvsv~~---~PvL~Ge~Y~AtC~va~YYPp~ 250 (466)
T PHA03270 182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRM--------FRRPSLSIRP---HAVLEGEPFGATCVAANYYPGD 250 (466)
T ss_pred ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEE--------ecCCcccccC---CccccCCCceEEEEeeeecCCC
Confidence 3599999999999999998776655333322333322 2344444433 34779999999999876 3432
Q ss_pred --eEEEeeCCEeccC
Q psy16859 111 --KVTWMKGIKDITT 123 (168)
Q Consensus 111 --~~~W~~~~~~~~~ 123 (168)
.+.|+.++..+..
T Consensus 251 Sv~lrWf~ng~~V~~ 265 (466)
T PHA03270 251 RAAFRWFEGGDEVFA 265 (466)
T ss_pred ceEEEEEeCCccccC
Confidence 4999999987753
No 359
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.25 E-value=0.0021 Score=35.59 Aligned_cols=52 Identities=21% Similarity=0.435 Sum_probs=29.2
Q ss_pred CCC-ceEEEEECCEecCCCCCceEEEecCCC----EEEEEEcCCCCCCCeEEEEEEEccc
Q psy16859 1 YVK-PEVIWLRGNTPLPKSSPRFKYIEDSNN----LHTLILSGVTAEEAGKYTCRVSNEY 55 (168)
Q Consensus 1 ~p~-p~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~ 55 (168)
||. .+|.|.+||..+..+........+.++ ...|.+. +++...|+|.+.+..
T Consensus 28 yP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~ 84 (94)
T cd05767 28 FPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWG 84 (94)
T ss_pred ECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCC
Confidence 454 489999999987432111111112122 2235554 345668999998753
No 360
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.23 E-value=0.0018 Score=37.40 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=25.7
Q ss_pred CceEEEecC-CCEEEEEEcCCCCCCCeEEEEEEEc
Q psy16859 20 PRFKYIEDS-NNLHTLILSGVTAEEAGKYTCRVSN 53 (168)
Q Consensus 20 ~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~ 53 (168)
.||...... .....|+|.+++.+|+|.|.|....
T Consensus 63 ~rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 63 GRFTITRDTSKSTVYLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred CcEEEEEEccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence 456554331 3456899999999999999998864
No 361
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.22 E-value=0.0012 Score=33.74 Aligned_cols=37 Identities=22% Similarity=0.466 Sum_probs=26.9
Q ss_pred eEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEc
Q psy16859 5 EVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSN 53 (168)
Q Consensus 5 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 53 (168)
+|.|++ |..+.... ..+|.+.+...+-.|.|.|.+.+
T Consensus 18 si~W~k-G~~~~~~~-----------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 18 NITWKK-GKEILEVS-----------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cEEEec-Cccccccc-----------ccEEeccCcccCCCcceEecCcc
Confidence 589999 55442111 12688888899999999998866
No 362
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.21 E-value=0.0024 Score=34.39 Aligned_cols=52 Identities=23% Similarity=0.460 Sum_probs=30.4
Q ss_pred CCCc-eEEEEECCEecCCCCCceEEEecCCC----EEEEEEcCCCCCCCeEEEEEEEccc
Q psy16859 1 YVKP-EVIWLRGNTPLPKSSPRFKYIEDSNN----LHTLILSGVTAEEAGKYTCRVSNEY 55 (168)
Q Consensus 1 ~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~ 55 (168)
||.. +|.|++++..+...........+.++ ...|.+. ..+...|+|.+.+..
T Consensus 21 ~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 21 YPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES 77 (83)
T ss_dssp BSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred ECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence 5655 89999999987432211111111133 2245555 556668999998764
No 363
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.18 E-value=0.02 Score=39.94 Aligned_cols=84 Identities=17% Similarity=0.193 Sum_probs=54.5
Q ss_pred CCEEEEEEcCCCCCCCeEEEEEEEccccee--eEEEEEEEEeccCCCcccCCCCeEEecCCcceEeecCCeEEEEEEEcc
Q psy16859 29 NNLHTLILSGVTAEEAGKYTCRVSNEYGYT--ETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAG 106 (168)
Q Consensus 29 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 106 (168)
.....|.|.++...|+|.|+-.+.+..... .....+.+. ..||.+...+ ..+..|+...-.|.+..
T Consensus 204 t~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~---------~RPPsVsV~a---~PVL~Ge~YkAtC~vAn 271 (490)
T PHA03271 204 TNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVC---------QRPASVDVLA---PPVLSGENYKASCIVRH 271 (490)
T ss_pred cceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEE---------ecCCCccccC---CccccCCCceEEEEeee
Confidence 445689999999999997755554432222 223444443 2355444433 23778999999999876
Q ss_pred -CCCC--eEEEeeCCEeccCC
Q psy16859 107 -SPKP--KVTWMKGIKDITTS 124 (168)
Q Consensus 107 -~p~~--~~~W~~~~~~~~~~ 124 (168)
.|+. .+.|+.+|......
T Consensus 272 YYPP~SvrlrWf~nG~~V~~~ 292 (490)
T PHA03271 272 FYPPGSVYVSWRQNGNIATPR 292 (490)
T ss_pred ecCCCceEEEEEeCCccccCc
Confidence 3432 49999998876543
No 364
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.10 E-value=0.0025 Score=35.41 Aligned_cols=52 Identities=21% Similarity=0.325 Sum_probs=26.4
Q ss_pred CCC-ceEEEEECCEecCCCCCceEEEecCCC---EEEEEEcCCCCCCCeEEEEEEEcc
Q psy16859 1 YVK-PEVIWLRGNTPLPKSSPRFKYIEDSNN---LHTLILSGVTAEEAGKYTCRVSNE 54 (168)
Q Consensus 1 ~p~-p~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~~~~~ 54 (168)
||. -+|.|.+||..+..+........+.+. ...|.|..-. ....|+|.+.+.
T Consensus 29 yP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~ 84 (96)
T cd07697 29 FPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHE 84 (96)
T ss_pred eCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEEC
Confidence 453 388999999886322111111111011 1235444321 233599999874
No 365
>PHA02633 hypothetical protein; Provisional
Probab=97.07 E-value=0.0017 Score=32.40 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=23.5
Q ss_pred EEEEEccCCCCCCeeEEEEEEcCCceeeEE
Q psy16859 136 VRLTLKRATDDENGTYFIVARNIYGSDRAF 165 (168)
Q Consensus 136 ~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~ 165 (168)
..|-|.++..+|+|.|.|.+.|..--...+
T Consensus 18 ~nLwilpa~~sDSGiYiC~~rn~t~c~~~s 47 (63)
T PHA02633 18 NNMLILNPTQSDSGIYMCITKNETYSDMMK 47 (63)
T ss_pred ccEEEeccccccCcEEEEEEcCCCeeEEEE
Confidence 368888999999999999999875444433
No 366
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.97 E-value=0.0037 Score=35.19 Aligned_cols=55 Identities=24% Similarity=0.359 Sum_probs=29.2
Q ss_pred CCCc-eEEEEECCEecCCCC-CceEEEecC--CC----EEEEEEcCCCCCCCeEEEEEEEccc
Q psy16859 1 YVKP-EVIWLRGNTPLPKSS-PRFKYIEDS--NN----LHTLILSGVTAEEAGKYTCRVSNEY 55 (168)
Q Consensus 1 ~p~p-~v~W~~~~~~~~~~~-~~~~~~~~~--~~----~~~l~i~~~~~~d~G~Y~C~~~~~~ 55 (168)
||.. +|.|++||+.+.... .......+. ++ ...|.|..-...+...|+|.+.+..
T Consensus 29 yP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 29 SPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA 91 (102)
T ss_pred eCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence 4554 789999998874211 000011110 12 2245554333345568999998754
No 367
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.96 E-value=0.0044 Score=31.77 Aligned_cols=49 Identities=24% Similarity=0.303 Sum_probs=33.2
Q ss_pred CCeEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEc
Q psy16859 95 GEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARN 157 (168)
Q Consensus 95 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 157 (168)
...+.|.|.+ ...+.|++ |..+.... ..++.+-....+-.|.|.|.+.+
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc
Confidence 4478899965 24599999 44333211 23566666677779999999877
No 368
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.93 E-value=0.007 Score=34.84 Aligned_cols=58 Identities=14% Similarity=0.196 Sum_probs=32.5
Q ss_pred CCCc-eEEEEECCEecCCCCCc-eEEEecCCC----EEEEEEcCCCCCC-CeEEEEEEEccccee
Q psy16859 1 YVKP-EVIWLRGNTPLPKSSPR-FKYIEDSNN----LHTLILSGVTAEE-AGKYTCRVSNEYGYT 58 (168)
Q Consensus 1 ~p~p-~v~W~~~~~~~~~~~~~-~~~~~~~~~----~~~l~i~~~~~~d-~G~Y~C~~~~~~~~~ 58 (168)
||.. +|.|++|++.+...... .......++ ...|.|......+ ...|+|.+.+.....
T Consensus 31 yP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~ 95 (115)
T cd05769 31 YPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTD 95 (115)
T ss_pred eCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCcc
Confidence 5774 99999999887432111 011111012 2346666544333 568999999764433
No 369
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.91 E-value=0.00057 Score=39.84 Aligned_cols=74 Identities=14% Similarity=0.175 Sum_probs=39.4
Q ss_pred ecCCeEEEEEEEccC-----CCCeEEEeeCCEeccCCCCc------------EE-EecCCEEEEEEccCCCCCCeeEEEE
Q psy16859 93 ALGEDISFSFRLAGS-----PKPKVTWMKGIKDITTSSRT------------MT-ETVNDYVRLTLKRATDDENGTYFIV 154 (168)
Q Consensus 93 ~~g~~~~l~C~~~~~-----p~~~~~W~~~~~~~~~~~~~------------~~-~~~~~~~~l~i~~~~~~d~g~y~C~ 154 (168)
.-.+++.|.|.+... +...+.|..++..+-.-+.. .+ ....+..+|.+...+.- .|.|+|.
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe 103 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE 103 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence 356789999998641 22349999887754321110 00 00012345777664333 8999999
Q ss_pred EEcCCceeeEEEE
Q psy16859 155 ARNIYGSDRAFVT 167 (168)
Q Consensus 155 ~~n~~g~~~~~~~ 167 (168)
+.......+..+.
T Consensus 104 Vt~~~~ege~~i~ 116 (130)
T PF08204_consen 104 VTELSREGETTIE 116 (130)
T ss_dssp EEETTEEEEEEEE
T ss_pred EEecCCCceEEEE
Confidence 9887766655443
No 370
>PHA03270 envelope glycoprotein C; Provisional
Probab=96.89 E-value=0.082 Score=37.25 Aligned_cols=104 Identities=15% Similarity=0.233 Sum_probs=47.8
Q ss_pred eEEEEECCEecCC-CCCceEEEecCCC---EEEEEEcCCCCCC-CeEEEEEEE-cccceeeEEEEEEEEeccCCCcccCC
Q psy16859 5 EVIWLRGNTPLPK-SSPRFKYIEDSNN---LHTLILSGVTAEE-AGKYTCRVS-NEYGYTETFARVDVINVSSGAVKHEK 78 (168)
Q Consensus 5 ~v~W~~~~~~~~~-~~~~~~~~~~~~~---~~~l~i~~~~~~d-~G~Y~C~~~-~~~~~~~~~~~l~v~~~~~~~~~~~~ 78 (168)
.+.||+|+.++.. ..-+.......++ .++|++.+...+. .=+.+|.+. +........++-.+
T Consensus 253 ~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~------------ 320 (466)
T PHA03270 253 AFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATG------------ 320 (466)
T ss_pred EEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccc------------
Confidence 6899999998732 1111112222233 3345444332211 127899875 32222222222122
Q ss_pred CCeEEecCCcceEeecCCeEEEEEEEccCC-CCeEEEeeCCEeccC
Q psy16859 79 PAMFLTRPDTMMSVALGEDISFSFRLAGSP-KPKVTWMKGIKDITT 123 (168)
Q Consensus 79 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~~~~~~~ 123 (168)
.|.+...|.-.+....|..+ |.+.--| ...+.|..++...+.
T Consensus 321 ~P~VY~~P~Isv~F~dG~AV---CtA~CVPegV~l~W~V~D~~~pa 363 (466)
T PHA03270 321 APTVLPRPTIEMEFGGDEAV---CTAACVPEGVTLAWLLGADPAPA 363 (466)
T ss_pred cCccccCCeEEEEEeCCEEE---EeccccCCCCEEEEEecCCCCCC
Confidence 12222233333444455443 6665444 447999876654443
No 371
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.79 E-value=0.013 Score=32.59 Aligned_cols=51 Identities=24% Similarity=0.281 Sum_probs=24.9
Q ss_pred ceEEEEECCEecCCCCCceEEEecCCC----EEEEEEcCCCCCCCeEEEEEEEccc
Q psy16859 4 PEVIWLRGNTPLPKSSPRFKYIEDSNN----LHTLILSGVTAEEAGKYTCRVSNEY 55 (168)
Q Consensus 4 p~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~ 55 (168)
.+|+|+||++.............. ++ ...|.+..-..++.-.|+|.+.+..
T Consensus 32 i~v~W~r~~~~~~~~~~~~~~~~~-dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~ 86 (96)
T cd07696 32 VNVTWTRGSGEPVKASIQPPESHN-NATLSVTSTLNVSTDDWISGDTFQCKVTHPD 86 (96)
T ss_pred cEEEEEECCeEeeeEEecccccCC-CCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence 489999987432111000001111 22 1235554333334457999998864
No 372
>KOG4597|consensus
Probab=96.64 E-value=0.0054 Score=43.31 Aligned_cols=80 Identities=19% Similarity=0.081 Sum_probs=55.8
Q ss_pred cceEeecCCeEEEEEEEccCCCCeEEEee---CCEeccCCCCcEE--EecCCEEEEEEccCCCCCCeeEEEEEEcCCcee
Q psy16859 88 TMMSVALGEDISFSFRLAGSPKPKVTWMK---GIKDITTSSRTMT--ETVNDYVRLTLKRATDDENGTYFIVARNIYGSD 162 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~---~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 162 (168)
....+..+++..++|-+.|.+.+.|.|.+ +...+........ ........|.|=+....|+|.|+|.+.|..|..
T Consensus 204 a~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~ 283 (560)
T KOG4597|consen 204 AEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFL 283 (560)
T ss_pred chhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecccccccee
Confidence 34556788899999999999999999986 2222221111111 111223468888888999999999999999988
Q ss_pred eEEEE
Q psy16859 163 RAFVT 167 (168)
Q Consensus 163 ~~~~~ 167 (168)
.+.+.
T Consensus 284 ~rdv~ 288 (560)
T KOG4597|consen 284 RRDVP 288 (560)
T ss_pred eccce
Confidence 76653
No 373
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.53 E-value=0.017 Score=32.12 Aligned_cols=51 Identities=18% Similarity=0.148 Sum_probs=30.1
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCC----EEEEEEcCCCCCCCeEEEEEEEccc
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNN----LHTLILSGVTAEEAGKYTCRVSNEY 55 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~ 55 (168)
.|+++|.|+.+..-.. ........++ .+.+.+...+.+|.-.++|.+.+..
T Consensus 30 kPaa~IsW~~~~~G~~----~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 30 RPAADVTWETNVYGTS----ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred ccCCEeEEeCCCCCcc----ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence 4899999998633211 0111111111 2346666566667779999999874
No 374
>PHA02982 hypothetical protein; Provisional
Probab=96.49 E-value=0.013 Score=37.04 Aligned_cols=73 Identities=8% Similarity=0.195 Sum_probs=48.4
Q ss_pred ceEeecCCeEEEEEEEcc-CCCCeEEEeeC-CEecc----------C--------CCCcEEEecCCEEEEEEccCCCCCC
Q psy16859 89 MMSVALGEDISFSFRLAG-SPKPKVTWMKG-IKDIT----------T--------SSRTMTETVNDYVRLTLKRATDDEN 148 (168)
Q Consensus 89 ~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~-~~~~~----------~--------~~~~~~~~~~~~~~l~i~~~~~~d~ 148 (168)
.+....++++.|.|.... .....+.|..+ +..+. . .+.......+..++|+|+++..+..
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~ 112 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL 112 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence 344667899999999543 33445888863 22222 1 1112233344567999999999999
Q ss_pred eeEEEEEEcCCce
Q psy16859 149 GTYFIVARNIYGS 161 (168)
Q Consensus 149 g~y~C~~~n~~g~ 161 (168)
|=|+|.+....+.
T Consensus 113 GCYtc~~ks~~~k 125 (251)
T PHA02982 113 GCFTCEAKDAEGK 125 (251)
T ss_pred CceEEEEecCCCc
Confidence 9999999985543
No 375
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.47 E-value=0.017 Score=32.07 Aligned_cols=50 Identities=10% Similarity=0.291 Sum_probs=25.6
Q ss_pred ceEEEEECCEecCCCCCce-EEEecCCC----EEEEEEcCCCCCCCeEEEEEEEccc
Q psy16859 4 PEVIWLRGNTPLPKSSPRF-KYIEDSNN----LHTLILSGVTAEEAGKYTCRVSNEY 55 (168)
Q Consensus 4 p~v~W~~~~~~~~~~~~~~-~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~ 55 (168)
.+|.|++||+. ....... ....+ ++ ...|.+....-.....|+|.+.+..
T Consensus 33 i~vtW~k~g~~-~~~~~~~~~~~~~-dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 33 VTFTWNSGSNS-TSGVKTYPAVLQS-GGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred cEEEEeECCEE-CCCcEECCCEeCC-CCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 48899999987 2221000 01111 11 1235554332223557999998764
No 376
>PHA03283 envelope glycoprotein E; Provisional
Probab=96.40 E-value=0.22 Score=36.07 Aligned_cols=85 Identities=20% Similarity=0.243 Sum_probs=54.0
Q ss_pred EEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEEeccCCCcc----------cCCCCeEEecCCcceEeecCCeEEEE
Q psy16859 32 HTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVK----------HEKPAMFLTRPDTMMSVALGEDISFS 101 (168)
Q Consensus 32 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~g~~~~l~ 101 (168)
.-|+|.+++.+++|.|+-..++..+.....+.|+|..+...... ...-..+.......+....|+++.+.
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~ls 213 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDLS 213 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeEe
Confidence 36999999999999999999987775556777778663321100 00011233334455667788888876
Q ss_pred EEEcc---CC--CCeEEEee
Q psy16859 102 FRLAG---SP--KPKVTWMK 116 (168)
Q Consensus 102 C~~~~---~p--~~~~~W~~ 116 (168)
-.... .+ ..++.|+.
T Consensus 214 i~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 214 VHLESDIGDPSFSATIDWYY 233 (542)
T ss_pred EEEeeccCCCCceEEEEEEE
Confidence 65542 12 23588975
No 377
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.27 E-value=0.011 Score=38.63 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=35.1
Q ss_pred CCCeEEEee-CCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCC
Q psy16859 108 PKPKVTWMK-GIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIY 159 (168)
Q Consensus 108 p~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 159 (168)
..|.+.|.. ++..+.......+. +.+.|.+.+...+++|.|+|.+.-..
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT---~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNIT---ETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEc---cCceEEeeccccccCCceEEEEEEEe
Confidence 467899996 45555544333332 33479999999999999999997643
No 378
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=96.15 E-value=0.27 Score=34.52 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=47.0
Q ss_pred cceEeecCCeEEEEEEEc--cCC-CCeEEEeeCCEecc-----------------CCCCcEEEecC------CEEEEEEc
Q psy16859 88 TMMSVALGEDISFSFRLA--GSP-KPKVTWMKGIKDIT-----------------TSSRTMTETVN------DYVRLTLK 141 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~--~~p-~~~~~W~~~~~~~~-----------------~~~~~~~~~~~------~~~~l~i~ 141 (168)
..+.+..|..+.+.|... |+. .....|+--+-++. ..+.+.+.... ..++|+|+
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 456677799999999865 333 44588975432221 12223322221 23689999
Q ss_pred cCCCCCCeeEEEEEEcC
Q psy16859 142 RATDDENGTYFIVARNI 158 (168)
Q Consensus 142 ~~~~~d~g~y~C~~~n~ 158 (168)
++...+.|=|+|.|...
T Consensus 352 ka~I~N~GCY~~~a~~g 368 (500)
T PHA02914 352 KAHINNAGCYEAQAFMG 368 (500)
T ss_pred eEEEEcCCceEEEEecC
Confidence 99999999999999875
No 379
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.12 E-value=0.035 Score=32.55 Aligned_cols=61 Identities=23% Similarity=0.216 Sum_probs=35.5
Q ss_pred eEEEEECCEecCC---CCCce--------EEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 5 EVIWLRGNTPLPK---SSPRF--------KYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 5 ~v~W~~~~~~~~~---~~~~~--------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
.|.|..+++.+-. ...+. .+..-..+.++|.+...+.- .|+|+|.+..........+.|..
T Consensus 48 ~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeVt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 48 YVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEVTELSREGETTIELKY 119 (130)
T ss_dssp EEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEEEecCCCceEEEEEEE
Confidence 5899998876521 11111 11111245567888775444 79999999877666666666665
No 380
>KOG1480|consensus
Probab=96.06 E-value=0.0033 Score=46.93 Aligned_cols=60 Identities=30% Similarity=0.494 Sum_probs=41.6
Q ss_pred CCceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeE-EEEEEE
Q psy16859 2 VKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET-FARVDV 66 (168)
Q Consensus 2 p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~v 66 (168)
|...++|++++..+.+ +.++..... ..|.+..+++.|.|+|+|++.|-.+.... .+.+.+
T Consensus 158 paae~~w~k~e~~~~p-d~n~~~~~d----~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~v 218 (909)
T KOG1480|consen 158 PKAEVEWLKNEVVIDP-DANVIRASD----HNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQV 218 (909)
T ss_pred hhhhhhccccCCCCCc-cccchhhhc----CCccccchhhhhcccceeeeehhhccccccceEEEE
Confidence 5567899999988754 333333333 25899999999999999999987654433 333333
No 381
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=95.98 E-value=0.024 Score=28.89 Aligned_cols=37 Identities=16% Similarity=0.379 Sum_probs=23.9
Q ss_pred eEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcc
Q psy16859 5 EVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNE 54 (168)
Q Consensus 5 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 54 (168)
.+.|++|+..+.. ... .+.+.+-. ++.|.|.|.+.+.
T Consensus 20 ~i~W~~n~~~~~g-~~~-----------~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 20 DIKWKKNDQVSQG-SDE-----------KYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred CceEEeCCccCCC-CCc-----------eEEeeccC-CCCceEEEEeCCC
Confidence 4899999866532 111 23333444 8899999998643
No 382
>PHA03042 CD47-like protein; Provisional
Probab=95.90 E-value=0.068 Score=35.28 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=38.9
Q ss_pred ecCCeEEEEEEEccC-----CCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCc
Q psy16859 93 ALGEDISFSFRLAGS-----PKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG 160 (168)
Q Consensus 93 ~~g~~~~l~C~~~~~-----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 160 (168)
.-.+++.+.|.+..- ....+.|..++..+-..+.. ...+|.+... ..-.|+|+|+|.+..-
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------n~aSL~~~f~-~~l~GNYTCEv~~l~n 94 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------NTSSLKFNFS-KNLSGNYTCEAINKFN 94 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------cceEEEEecc-ccCCCceeEEEeeccc
Confidence 356789999998642 24459999988876543321 1134555432 2238999999987543
No 383
>PHA03269 envelope glycoprotein C; Provisional
Probab=95.69 E-value=0.52 Score=34.07 Aligned_cols=137 Identities=13% Similarity=0.131 Sum_probs=61.6
Q ss_pred eEEEEECCEecCCCCCceEEEecCCC----EEEEEEcCCCCCC--CeEEEEEEE-cccceeeEEEEEEEEeccCCCcccC
Q psy16859 5 EVIWLRGNTPLPKSSPRFKYIEDSNN----LHTLILSGVTAEE--AGKYTCRVS-NEYGYTETFARVDVINVSSGAVKHE 77 (168)
Q Consensus 5 ~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d--~G~Y~C~~~-~~~~~~~~~~~l~v~~~~~~~~~~~ 77 (168)
.+.||+|+.++....-+.......++ .++|++......| --..+|.+. +..+.....++-.+
T Consensus 361 rlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaa----------- 429 (566)
T PHA03269 361 IVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAV----------- 429 (566)
T ss_pred EEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheeccccc-----------
Confidence 68999999888421111111111122 3445553322222 335799875 32222221112122
Q ss_pred CCCeEEecCCcceEeecCCeEEEEEEEccCCC--CeEEEeeCCEeccCCCCcEEEecC-CE-EEEEEcc---CCCCC-Ce
Q psy16859 78 KPAMFLTRPDTMMSVALGEDISFSFRLAGSPK--PKVTWMKGIKDITTSSRTMTETVN-DY-VRLTLKR---ATDDE-NG 149 (168)
Q Consensus 78 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~~~~~~~~~~~~~~~~~-~~-~~l~i~~---~~~~d-~g 149 (168)
.|.+...|.-++....|..+ |.+..-|. ..+.|..+........... .... +. +...+.. +...| --
T Consensus 430 -tP~VY~~PtISm~FedG~AV---CtA~CVP~~~V~l~WlVgD~p~~~~~t~i-tG~C~ehPGLVNLRS~~pLS~~dgpv 504 (566)
T PHA03269 430 -TPDVYPFPNVSIEIIDGHIV---CLAKCVPRGVVHFNWWINDIPIEHENSEI-LGVCDNNKRFVNLQSSCDTSELDGPI 504 (566)
T ss_pred -CCccccCCeEEEEEeCCEEE---EecccccCCCceEEEEecCCCCCCcccee-eccCCCCCCceeecccccccccCCce
Confidence 12222333334445555444 77765554 4799987665433322211 1111 11 2233333 33343 35
Q ss_pred eEEEEEEc
Q psy16859 150 TYFIVARN 157 (168)
Q Consensus 150 ~y~C~~~n 157 (168)
.|+|.+.-
T Consensus 505 eYTCrL~G 512 (566)
T PHA03269 505 TYSCHLDG 512 (566)
T ss_pred eEEEEEee
Confidence 89999863
No 384
>KOG1480|consensus
Probab=95.57 E-value=0.0047 Score=46.20 Aligned_cols=73 Identities=22% Similarity=0.339 Sum_probs=54.1
Q ss_pred cceEeecCCeEEEEEEE-ccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceee
Q psy16859 88 TMMSVALGEDISFSFRL-AGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDR 163 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~ 163 (168)
....+.++....+.|.. .+.|...+.|++++..+.+...... .....+.+..+...|.|.|+|.+.|..+...
T Consensus 137 ~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~---~~d~~li~~~arlsd~~nytc~a~ni~~~r~ 210 (909)
T KOG1480|consen 137 VGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIR---ASDHNLIISQARLSDSGNYTCEATNIVAKRK 210 (909)
T ss_pred hhheecccccccccccCcccchhhhhhccccCCCCCccccchh---hhcCCccccchhhhhcccceeeeehhhcccc
Confidence 45567788888888874 4678888999999987776332221 1123588889999999999999999776543
No 385
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=95.46 E-value=0.15 Score=35.06 Aligned_cols=21 Identities=10% Similarity=0.357 Sum_probs=16.8
Q ss_pred eEEEEEEEcc-CC-CCeEEEeeC
Q psy16859 97 DISFSFRLAG-SP-KPKVTWMKG 117 (168)
Q Consensus 97 ~~~l~C~~~~-~p-~~~~~W~~~ 117 (168)
.++|.|.+.| .| ...+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 5799999998 44 346999998
No 386
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=95.18 E-value=0.062 Score=30.22 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=40.3
Q ss_pred eEEEEEEEccCCCCe--EEEeeCCEeccCCC-CcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceee
Q psy16859 97 DISFSFRLAGSPKPK--VTWMKGIKDITTSS-RTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDR 163 (168)
Q Consensus 97 ~~~l~C~~~~~p~~~--~~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~ 163 (168)
.+...-.....+... +.|..+........ ...+....+..+|.|+.++..|+|.|.-++.+..|...
T Consensus 29 sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~ 98 (108)
T PF11465_consen 29 SVQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVC 98 (108)
T ss_dssp EEEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEE
T ss_pred EEEEEEEcccCCceEEEEEEcCCCcccccccccceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEE
Confidence 344444444444443 66665554443211 11223333445899999999999999999999988764
No 387
>PHA03273 envelope glycoprotein C; Provisional
Probab=95.16 E-value=0.8 Score=32.92 Aligned_cols=99 Identities=12% Similarity=0.136 Sum_probs=48.4
Q ss_pred eEEEEECCEecCC-CC--CceEEEec--CCCEEEEEEcCCCC-CCCeEEEEEEE-cccceeeEEEEEEEEeccCCCcccC
Q psy16859 5 EVIWLRGNTPLPK-SS--PRFKYIED--SNNLHTLILSGVTA-EEAGKYTCRVS-NEYGYTETFARVDVINVSSGAVKHE 77 (168)
Q Consensus 5 ~v~W~~~~~~~~~-~~--~~~~~~~~--~~~~~~l~i~~~~~-~d~G~Y~C~~~-~~~~~~~~~~~l~v~~~~~~~~~~~ 77 (168)
.+.||+|+.++.. .. .......+ ....++|++.+... +..-+.+|.+. +........+.-.+
T Consensus 269 ~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~----------- 337 (486)
T PHA03273 269 KLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAG----------- 337 (486)
T ss_pred EEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccc-----------
Confidence 7899999998851 11 11111112 11234566655432 33347899875 32222222111111
Q ss_pred CCCeEEecCCcceEeecCCeEEEEEEEccCCC--CeEEEeeCC
Q psy16859 78 KPAMFLTRPDTMMSVALGEDISFSFRLAGSPK--PKVTWMKGI 118 (168)
Q Consensus 78 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~~ 118 (168)
.|.+...|.-.+....|..+ |.+.--|. ..+.|..+.
T Consensus 338 -~P~Vy~~P~Is~~F~~G~AV---CtA~CVP~egV~l~W~v~D 376 (486)
T PHA03273 338 -TPSVFVAPTVSVTVEDGDAV---CTAKCVPSTGVFVSWSVND 376 (486)
T ss_pred -cCccccCCeEEEEEeCCEEE---EecccccCCCeeEEEEccC
Confidence 12222333334444455444 77766554 679998755
No 388
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=94.81 E-value=0.1 Score=29.95 Aligned_cols=33 Identities=18% Similarity=0.378 Sum_probs=25.4
Q ss_pred CceEEEec-CCCEEEEEEcCCCCCCCeEEEEEEE
Q psy16859 20 PRFKYIED-SNNLHTLILSGVTAEEAGKYTCRVS 52 (168)
Q Consensus 20 ~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~ 52 (168)
.++....+ ..+..+|+|.+++.+|++.|.|...
T Consensus 61 ~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca~e 94 (115)
T cd05721 61 DGFNCDGTLGNEQVNFTLQNLRANQTDIYFCKIE 94 (115)
T ss_pred CCeEEeEeCCCCEEEEEEcCCCHHHCeEEEEEee
Confidence 45544433 3667899999999999999999763
No 389
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.80 E-value=0.16 Score=28.46 Aligned_cols=49 Identities=10% Similarity=0.093 Sum_probs=24.5
Q ss_pred ceEEEEECCEecCCCCCceEEEecCCC----EEEEEEcCCCCCCCeEEEEEEEccc
Q psy16859 4 PEVIWLRGNTPLPKSSPRFKYIEDSNN----LHTLILSGVTAEEAGKYTCRVSNEY 55 (168)
Q Consensus 4 p~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~ 55 (168)
..|.|.+++.. .. ....... +.++ .+.|.|..-.-.....|+|.+.+..
T Consensus 37 i~V~W~~~g~~-~~-~~t~~~~-~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~ 89 (99)
T cd04986 37 AVFTWTPSGGK-EA-VQTSAES-DQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPE 89 (99)
T ss_pred eEEEEEECCcc-Cc-EEcCccc-CCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCC
Confidence 58999999864 11 0000001 1112 2245555322233346999998764
No 390
>PHA03282 envelope glycoprotein E; Provisional
Probab=94.59 E-value=1.2 Score=32.16 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=20.6
Q ss_pred EEEEcCCCCCCCeEEEEEEEcccc
Q psy16859 33 TLILSGVTAEEAGKYTCRVSNEYG 56 (168)
Q Consensus 33 ~l~i~~~~~~d~G~Y~C~~~~~~~ 56 (168)
+|.|.+++.+|+|.|+..+.....
T Consensus 125 tl~l~~a~~~DsG~Y~L~~~~~~~ 148 (540)
T PHA03282 125 TLVLREARETDSGMYVLSVSRAPN 148 (540)
T ss_pred eEEEeeccccCCceEEEEecCCCC
Confidence 799999999999999998765433
No 391
>PHA03042 CD47-like protein; Provisional
Probab=94.31 E-value=0.22 Score=32.98 Aligned_cols=52 Identities=19% Similarity=0.345 Sum_probs=31.1
Q ss_pred eEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEE
Q psy16859 5 EVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVD 65 (168)
Q Consensus 5 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 65 (168)
.|.|..+++.+-..+. .+.++|.+... ..-.|+|+|++.+..........|.
T Consensus 52 ~V~Wkf~~~~If~~n~--------tn~aSL~~~f~-~~l~GNYTCEv~~l~n~gk~~IeLk 103 (286)
T PHA03042 52 HINWKFNNKVIFKKNN--------TNTSSLKFNFS-KNLSGNYTCEAINKFNKIKNTIELQ 103 (286)
T ss_pred EEEEEeCCeeEEEecC--------CcceEEEEecc-ccCCCceeEEEeecccCccEEEEEE
Confidence 4789888876632111 12246666443 4457999999987655544444444
No 392
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=94.16 E-value=0.26 Score=27.49 Aligned_cols=47 Identities=26% Similarity=0.338 Sum_probs=25.8
Q ss_pred ceEEEEECCEecCCCCCceEEE----ecCCCEEEEEEcCCCCCCCe-EEEEEEEc
Q psy16859 4 PEVIWLRGNTPLPKSSPRFKYI----EDSNNLHTLILSGVTAEEAG-KYTCRVSN 53 (168)
Q Consensus 4 p~v~W~~~~~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~G-~Y~C~~~~ 53 (168)
.+|.|+++...+.... |.-. ........+++.-. .+|.| +|+|.+.-
T Consensus 33 l~v~LlkG~~~l~~~~--f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L 84 (99)
T cd07689 33 LEIELLKGETLLPSKS--FLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKL 84 (99)
T ss_pred eEEEEecCcceecccc--cccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEE
Confidence 7899999877663221 1110 00011234555554 55555 99999864
No 393
>PHA03052 Hypothetical protein; Provisional
Probab=93.39 E-value=0.4 Score=24.54 Aligned_cols=35 Identities=11% Similarity=0.329 Sum_probs=27.2
Q ss_pred cceEeecCCeEEEEEEEc-c--CCCCeEEEeeCCEecc
Q psy16859 88 TMMSVALGEDISFSFRLA-G--SPKPKVTWMKGIKDIT 122 (168)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~-~--~p~~~~~W~~~~~~~~ 122 (168)
..+.+..|..+++.|.+. | ...+.+.|..++..+.
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 467788999999999986 2 2345699999888774
No 394
>PHA03271 envelope glycoprotein C; Provisional
Probab=93.11 E-value=2.3 Score=30.36 Aligned_cols=101 Identities=16% Similarity=0.197 Sum_probs=47.7
Q ss_pred eEEEEECCEecCCCCCceEE---EecC---CCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEEeccCCCcccCC
Q psy16859 5 EVIWLRGNTPLPKSSPRFKY---IEDS---NNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEK 78 (168)
Q Consensus 5 ~v~W~~~~~~~~~~~~~~~~---~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~ 78 (168)
.+.||.||.++.....+-.. .... ...++|++.+...+..-..+|.+.=..+.......-.+
T Consensus 279 rlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaa------------ 346 (490)
T PHA03271 279 YVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATA------------ 346 (490)
T ss_pred EEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeeccc------------
Confidence 68999999877432211111 1111 12345555444333334789987522121111111111
Q ss_pred CCeEEecCCcceEeecCCeEEEEEEEccCC-CCeEEEeeCCEe
Q psy16859 79 PAMFLTRPDTMMSVALGEDISFSFRLAGSP-KPKVTWMKGIKD 120 (168)
Q Consensus 79 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~~~~ 120 (168)
.|.+...|.-.+....|..+ |.+..-| ...+.|..+...
T Consensus 347 tP~VY~~P~ISv~FedG~AV---CtA~CVP~gV~lrWlVgD~p 386 (490)
T PHA03271 347 IPTVYHHPRISLAFKDGYAI---CTIECVPSGITVRWLVHDEP 386 (490)
T ss_pred CCccccCCeEEEEEeCCEEE---EeccccCCCcEEEEEecCCC
Confidence 22223334334445555444 6665444 447999875544
No 395
>KOG4597|consensus
Probab=92.79 E-value=0.23 Score=35.60 Aligned_cols=64 Identities=14% Similarity=0.169 Sum_probs=43.1
Q ss_pred CCceEEEEE---CCEecCCCCCceEEEec--CCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEE
Q psy16859 2 VKPEVIWLR---GNTPLPKSSPRFKYIED--SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVI 67 (168)
Q Consensus 2 p~p~v~W~~---~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 67 (168)
|.+.|+|-+ |+..+... ..+...+ ...+..|.|-+....|+|-|+|.+.+..|.....+.+.+.
T Consensus 224 q~r~V~c~qv~anr~~vv~~--~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c~s~ 292 (560)
T KOG4597|consen 224 QYRVVTCEQVFANRENVVMR--PNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRRDVPCSSV 292 (560)
T ss_pred cCceeeeehhhccccceeec--CccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeeccceeeee
Confidence 667888865 33322111 1111111 2345679999999999999999999999988887766664
No 396
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=92.72 E-value=0.14 Score=36.77 Aligned_cols=85 Identities=21% Similarity=0.346 Sum_probs=15.2
Q ss_pred EEEEEcCCCCCCCeEEEEEEEcccceeeE-EEEEEEEeccCCC-c--------ccCCCCeEEecCCcceEeecCCeEEEE
Q psy16859 32 HTLILSGVTAEEAGKYTCRVSNEYGYTET-FARVDVINVSSGA-V--------KHEKPAMFLTRPDTMMSVALGEDISFS 101 (168)
Q Consensus 32 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~v~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~g~~~~l~ 101 (168)
..|.|.+++.+|+|.|+-...+..+.... .+.|.|......+ . .......+.......+....|+++.+.
T Consensus 89 ~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~~ 168 (439)
T PF02480_consen 89 GGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHLS 168 (439)
T ss_dssp ---------------------------------------------------------SEEEEEE--SEEE--TT--EE--
T ss_pred CceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEEe
Confidence 46999999999999999999877655433 5566665432210 0 000011222333356677789988887
Q ss_pred EEEccC----C--CCeEEEee
Q psy16859 102 FRLAGS----P--KPKVTWMK 116 (168)
Q Consensus 102 C~~~~~----p--~~~~~W~~ 116 (168)
-.+... . ..++.|+.
T Consensus 169 v~l~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 169 VHLQSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp -EEEEEESSS--EEEEEEEEE
T ss_pred EEEEeccCCCCCeeEEEEEEE
Confidence 765531 1 22588986
No 397
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=92.56 E-value=0.91 Score=24.32 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=21.3
Q ss_pred EEEEcCCCCCCCeEEEEEEE-cccceeeEEEEEEE
Q psy16859 33 TLILSGVTAEEAGKYTCRVS-NEYGYTETFARVDV 66 (168)
Q Consensus 33 ~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~~~l~v 66 (168)
.+.....+..|+|.+.|.+. +..........+.|
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 35566677899999999994 43333333444433
No 398
>PHA02982 hypothetical protein; Provisional
Probab=90.85 E-value=3 Score=26.86 Aligned_cols=76 Identities=12% Similarity=0.124 Sum_probs=45.8
Q ss_pred CCEEEEEEcCCCCCCCeEEEEEEEcccceeeE-EEEEEEEeccCCCcccCCCCeEEecCCcceEeecCCeEEEEEEEccC
Q psy16859 29 NNLHTLILSGVTAEEAGKYTCRVSNEYGYTET-FARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGS 107 (168)
Q Consensus 29 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 107 (168)
+..++|+|.++..+..|.|+|++....+..+. ..-|.|+.. .+.. ....-.....+.|-+-..
T Consensus 97 g~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~-----------~V~~-----~W~e~nNeT~V~CyVgS~ 160 (251)
T PHA02982 97 GNSSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEIQKE-----------DILY-----VVEEHNNETIITCFVGSK 160 (251)
T ss_pred ccceeEEeccCCcccCCceEEEEecCCCchheeheeeeEecc-----------eEEE-----EEEecCCeEEEEEEEEec
Confidence 66789999999999999999999976654433 444555211 1111 111122345567876543
Q ss_pred CCCeEEEeeCCEe
Q psy16859 108 PKPKVTWMKGIKD 120 (168)
Q Consensus 108 p~~~~~W~~~~~~ 120 (168)
..+--.|..+|..
T Consensus 161 ~~dvp~W~V~GVv 173 (251)
T PHA02982 161 HGDVPRFIVAGIV 173 (251)
T ss_pred cCCCccEEEeeEE
Confidence 3332388877653
No 399
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=90.13 E-value=1.8 Score=23.18 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=17.6
Q ss_pred EEEccCCCCCCeeEEEEE-EcCCcee
Q psy16859 138 LTLKRATDDENGTYFIVA-RNIYGSD 162 (168)
Q Consensus 138 l~i~~~~~~d~g~y~C~~-~n~~g~~ 162 (168)
+........|+|.+.|.| .+.....
T Consensus 45 ~~~~~~~~~d~G~w~C~a~~~~~k~~ 70 (80)
T PF05790_consen 45 VSTFTPTTEDSGTWVCTASDNEPKER 70 (80)
T ss_dssp EEEESBTCGGSEEEEEEEEECTTEEE
T ss_pred EEEecCCCCCCEEEEEEEcCCceEEE
Confidence 445566778999999999 5544433
No 400
>PHA03112 IL-18 binding protein; Provisional
Probab=88.70 E-value=2.9 Score=25.08 Aligned_cols=71 Identities=20% Similarity=0.210 Sum_probs=40.7
Q ss_pred ecCCeEEEEEEEccC-CC-CeEEEeeCC-EeccCCC-------------CcEEEecCCEEEEEEccCCCC-CCeeEEEEE
Q psy16859 93 ALGEDISFSFRLAGS-PK-PKVTWMKGI-KDITTSS-------------RTMTETVNDYVRLTLKRATDD-ENGTYFIVA 155 (168)
Q Consensus 93 ~~g~~~~l~C~~~~~-p~-~~~~W~~~~-~~~~~~~-------------~~~~~~~~~~~~l~i~~~~~~-d~g~y~C~~ 155 (168)
.+++.+.|.|.+-+. |. .-+.|..++ ..+.... ............+.+..++.+ ..-.++|+.
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCVL 115 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCVL 115 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEEE
Confidence 358899999998764 44 349999654 2222110 011111122345666777654 344899998
Q ss_pred EcCCceee
Q psy16859 156 RNIYGSDR 163 (168)
Q Consensus 156 ~n~~g~~~ 163 (168)
....|...
T Consensus 116 ~D~~~~~k 123 (141)
T PHA03112 116 MDLDGPIK 123 (141)
T ss_pred ecCCchhh
Confidence 87665443
No 401
>PHA03286 envelope glycoprotein E; Provisional
Probab=88.50 E-value=7.7 Score=28.18 Aligned_cols=84 Identities=11% Similarity=0.001 Sum_probs=51.7
Q ss_pred EEEEcCCCCCCCeEEEEEEEcccceee-EEEEEEEEeccCC--Cccc--CC----CCeEEecCCcceEeecCCeEEEEEE
Q psy16859 33 TLILSGVTAEEAGKYTCRVSNEYGYTE-TFARVDVINVSSG--AVKH--EK----PAMFLTRPDTMMSVALGEDISFSFR 103 (168)
Q Consensus 33 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v~~~~~~--~~~~--~~----~~~~~~~~~~~~~~~~g~~~~l~C~ 103 (168)
-|+|.+++.+++|.|+-...|..+... ..+-|.|...... +... .. ...+.......+....|+++.+.-.
T Consensus 128 ~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv~ 207 (492)
T PHA03286 128 ELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASVT 207 (492)
T ss_pred ceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEEEE
Confidence 699999999999999999998765544 4667777533210 0000 00 0123334446667778988877655
Q ss_pred Ecc-----CCCCeEEEee
Q psy16859 104 LAG-----SPKPKVTWMK 116 (168)
Q Consensus 104 ~~~-----~p~~~~~W~~ 116 (168)
... .-..++.|+.
T Consensus 208 l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 208 AHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EeecccCCCceEEEEEEE
Confidence 541 1133588986
No 402
>KOG0613|consensus
Probab=87.11 E-value=2.5 Score=34.47 Aligned_cols=131 Identities=14% Similarity=0.047 Sum_probs=74.7
Q ss_pred EEEEcCCCCCCCeEEEEEEEcccceeeEEE--EEEEEeccCCCc----ccCCCCeEEec--CCcceEeecCCeEEEEEEE
Q psy16859 33 TLILSGVTAEEAGKYTCRVSNEYGYTETFA--RVDVINVSSGAV----KHEKPAMFLTR--PDTMMSVALGEDISFSFRL 104 (168)
Q Consensus 33 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~--~l~v~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~g~~~~l~C~~ 104 (168)
+..|.+....+.+.|+|...+..+...... .+.+......+. ....++..... ....+....+..+.+.|..
T Consensus 279 t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~ 358 (1205)
T KOG0613|consen 279 TKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTAL 358 (1205)
T ss_pred cccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccc
Confidence 455566666777888888877665543322 222211111000 00011111111 1134555667789999999
Q ss_pred ccCCCCe-EEEeeCCEeccCCCC--cEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceee
Q psy16859 105 AGSPKPK-VTWMKGIKDITTSSR--TMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDR 163 (168)
Q Consensus 105 ~~~p~~~-~~W~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~ 163 (168)
.+...+. +.|+.+......... ...........+.+..+...+.+.|.|.+.|..|...
T Consensus 359 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~ 420 (1205)
T KOG0613|consen 359 SGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQ 420 (1205)
T ss_pred cCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCccc
Confidence 9988777 999986654443321 1111112224577778888899999999999988654
No 403
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=86.75 E-value=3.7 Score=22.54 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=39.3
Q ss_pred ceEeecCCeEEEEEEEccC-----CCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEE
Q psy16859 89 MMSVALGEDISFSFRLAGS-----PKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVA 155 (168)
Q Consensus 89 ~~~~~~g~~~~l~C~~~~~-----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 155 (168)
...+..|.+++..|.+... ....+.|..++..++... +... ....+.+++.+......-.|-|..
T Consensus 12 ~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~q-y~~i-n~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 12 SPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQ-YRVI-NDTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp SSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGC-EEEE-STTEEEEEESS--SSEEEEEEEEE
T ss_pred CCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhH-ccee-CCeEEEEEEccCCCCCceEEEEEE
Confidence 3467899999999998632 344699998887655433 3222 233367778777666655666653
No 404
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=86.11 E-value=5.3 Score=24.65 Aligned_cols=37 Identities=24% Similarity=0.211 Sum_probs=26.2
Q ss_pred CEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 30 NLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 30 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
...-|.|.+.+.+|+|.|.-.++-........+.+.+
T Consensus 122 ~~~lL~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~~~v 158 (161)
T PF01688_consen 122 NGVLLRIRNPRPEDSGIYYLRVWLDGANKADVFRLSV 158 (161)
T ss_pred cceEEEeCCCCcccceEEEEEEEECCCCCCcEEEEee
Confidence 3446999999999999999999855444333344433
No 405
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=84.94 E-value=4.9 Score=22.38 Aligned_cols=51 Identities=24% Similarity=0.297 Sum_probs=27.1
Q ss_pred CCCceEEEEECCEecCCCCCceEEEecCCC----EEEEEEcCCCCCCCeEEEEEEEccc
Q psy16859 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNN----LHTLILSGVTAEEAGKYTCRVSNEY 55 (168)
Q Consensus 1 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~ 55 (168)
.|+..|.|.-+ + ......+.....++ .+.+.+-.....|...-+|.+.+..
T Consensus 33 rPpa~ItW~t~---l-~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~ 87 (98)
T cd05890 33 KPPSVVRWDTR---L-KGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRN 87 (98)
T ss_pred cCCcEeEEEcc---C-CCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEecc
Confidence 38889999742 1 01111221222122 1234445556677778999998753
No 406
>KOG0613|consensus
Probab=83.99 E-value=1.7 Score=35.32 Aligned_cols=138 Identities=17% Similarity=0.102 Sum_probs=70.8
Q ss_pred EEEEECCEecCCCC-CceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEEeccCCCcccCCCCeEEe
Q psy16859 6 VIWLRGNTPLPKSS-PRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLT 84 (168)
Q Consensus 6 v~W~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~ 84 (168)
+.||++........ ..+..... .....+.|..+...+.+.|.|.+.|..|.........|..... ...+....
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~-~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~-----gt~~~~~k 440 (1205)
T KOG0613|consen 367 AQGYHGEEVSSESLGALPCPVGT-VTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMP-----GTQPPKFK 440 (1205)
T ss_pred heeeccccccccccccccccccc-ccCcchhhhhcCcccccccccceeccCCcccccchhhcccccC-----CCCCcccc
Confidence 77777664432111 11111222 3334688888999999999999999887765543333322111 11222222
Q ss_pred cCCcceEeecC--CeEEEEEEEccCCCC--eEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEE
Q psy16859 85 RPDTMMSVALG--EDISFSFRLAGSPKP--KVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYF 152 (168)
Q Consensus 85 ~~~~~~~~~~g--~~~~l~C~~~~~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 152 (168)
.. .......+ ..+.+.|...+.+.+ .+.|++++.... +...-.......+|.+......+.+.|.
T Consensus 441 k~-~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s--~~s~~l~r~~~tslLlk~~~~~~~A~~~ 509 (1205)
T KOG0613|consen 441 KD-VSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLS--DRSVTLTRDVLTSLLLKVASLSDGAQYT 509 (1205)
T ss_pred cc-ccccccccCCcccccccCCCCccccceeEeeccCCcccc--cccccccccchhhheeeccCCCccchhh
Confidence 22 12223333 678888988877755 355555433222 1111111122234556666666666664
No 407
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=83.37 E-value=4.5 Score=20.74 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=34.3
Q ss_pred ceEEEEECCEecC-----CCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 4 PEVIWLRGNTPLP-----KSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 4 p~v~W~~~~~~~~-----~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
..+.||++++.+. ...++++..+ -..+.+...|.+...+....|..-....+.|
T Consensus 7 v~H~W~~~g~~~~~i~l~i~g~r~Rt~S---------~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 7 VYHRWYKNGKLVARIPLPISGGRWRTWS---------SKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEEECCEEEEEEEEeccCCCEEEEE---------EeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 3578999997652 2233433222 2233447889999999988887766555554
No 408
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=82.48 E-value=16 Score=26.33 Aligned_cols=113 Identities=11% Similarity=0.009 Sum_probs=63.0
Q ss_pred EEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEEeccCCCcccCCCCeEEecCCcceEeecCC-eEEEEEEEccC--
Q psy16859 31 LHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGE-DISFSFRLAGS-- 107 (168)
Q Consensus 31 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~l~C~~~~~-- 107 (168)
.++|+|.++..+..|-|+|++....-......-|.|.. .+.. .+..++. .....|-+...
T Consensus 345 ~STLTIkka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d------------~V~f-----~W~~e~~n~T~V~Cyv~sy~~ 407 (500)
T PHA02914 345 NSTLTIKKAHINNAGCYEAQAFMGKFKEECRHCFKVAD------------HVFF-----KWNTEGDNETKVACYAAQYDM 407 (500)
T ss_pred hceEEeeeEEEEcCCceEEEEecCcchhhhhhheEecc------------EEEE-----EEEeccCceEEEEEEEEeccc
Confidence 56899999999999999999986533333333444411 1111 1222333 34566876443
Q ss_pred CCCeEEEeeCCEeccCCCCcEE-------EecCCEEEEEEccCCCCC-CeeEEEEEEcCCc
Q psy16859 108 PKPKVTWMKGIKDITTSSRTMT-------ETVNDYVRLTLKRATDDE-NGTYFIVARNIYG 160 (168)
Q Consensus 108 p~~~~~W~~~~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d-~g~y~C~~~n~~g 160 (168)
-++.+.|..+|..........+ ...-....+.|.+-...| --.-.|...-..|
T Consensus 408 kp~si~wkvnGV~~~G~~~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~ 468 (500)
T PHA02914 408 QPFSILWKSNGVSFGGEIADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQG 468 (500)
T ss_pred CCceeEEEEccEEecCeecCcccccccccccccceEEEEEecccCccccccceEEEecCCC
Confidence 3556899988765443211000 111123456666655555 4566777665444
No 409
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=82.04 E-value=6 Score=22.04 Aligned_cols=60 Identities=12% Similarity=0.072 Sum_probs=34.2
Q ss_pred EEEEEE-EccCCCCeEEEeeC--CEeccCCCCcEEEec-CC----EEEEEEccCCCCCCeeEEEEEEcCCcee
Q psy16859 98 ISFSFR-LAGSPKPKVTWMKG--IKDITTSSRTMTETV-ND----YVRLTLKRATDDENGTYFIVARNIYGSD 162 (168)
Q Consensus 98 ~~l~C~-~~~~p~~~~~W~~~--~~~~~~~~~~~~~~~-~~----~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 162 (168)
+.-.|. +.|.|+..+.|..+ |.. . ...... .+ .+.+.+......|.-..+|.+.......
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~-e----tq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~ 90 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEA-E----FQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRF 90 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCce-e----eeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccc
Confidence 445688 56899999999842 221 0 000001 11 1334455555566678999999864433
No 410
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=80.65 E-value=5 Score=28.01 Aligned_cols=15 Identities=13% Similarity=0.339 Sum_probs=9.7
Q ss_pred CCCCCeEEEEEEEcc
Q psy16859 40 TAEEAGKYTCRVSNE 54 (168)
Q Consensus 40 ~~~d~G~Y~C~~~~~ 54 (168)
...+...|+|.+.+.
T Consensus 289 ~~~~~~~Y~C~V~Hs 303 (338)
T PHA02865 289 PTDMSNQIVCVVFHS 303 (338)
T ss_pred CCCCCCCcEEEEEeC
Confidence 445556688877764
No 411
>KOG0200|consensus
Probab=78.68 E-value=21 Score=27.43 Aligned_cols=110 Identities=16% Similarity=0.260 Sum_probs=56.3
Q ss_pred EEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEEeccCCCcccCCCCeEEecCCcceEeecCCeEEEEEEEccCCCCe
Q psy16859 32 HTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPK 111 (168)
Q Consensus 32 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~ 111 (168)
..+.+..+...|.|.|+|.+.+ ......+. ... ...+.+............+....+ +...+.+.
T Consensus 13 ~~~~~~~~~~~~~~~y~~~~~~----~~~~~~~~--~~~------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 77 (609)
T KOG0200|consen 13 WFLIIDSVVPGDKGFYTCLVSN----INLIISLD--DIV------IHRPILLAGENANPNTVVTVGVPL---AFSIPQPF 77 (609)
T ss_pred ceEEEEEEEecCCccEEEEEec----CceeeEee--ccc------CcccccccCCCCCcceeeccccee---eeecCCCc
Confidence 3678888889999999999998 11111222 111 111112222112233334444444 22223555
Q ss_pred EEEeeCCEec-----cCCCC-----------cEEEecCCEEEEEEccCCCCCCeeEEEEEEc
Q psy16859 112 VTWMKGIKDI-----TTSSR-----------TMTETVNDYVRLTLKRATDDENGTYFIVARN 157 (168)
Q Consensus 112 ~~W~~~~~~~-----~~~~~-----------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 157 (168)
+.|....... ..... .... ......+.+.++...+.+.|.|...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~ 138 (609)
T KOG0200|consen 78 IKWGTNLEIECEDGLFEYKTKKTLSFVEIEYNRLV-DGTFESGLIYNVSLTEAGEYLCWTGR 138 (609)
T ss_pred ceeeeeecccccccCcchhheeeeeeeeccccccc-cCceEeeeeeccChhhcceeeccCCC
Confidence 6666433110 00000 0000 22345678888999999999998875
No 412
>PHA03281 envelope glycoprotein E; Provisional
Probab=78.01 E-value=27 Score=26.31 Aligned_cols=84 Identities=17% Similarity=0.200 Sum_probs=51.6
Q ss_pred EEEEcCCCCCCCeEEEEEEEcccce-eeEEEEEEEEeccCCCcc------cCCCCeEEecCCcceEeecCCeEEEEEEEc
Q psy16859 33 TLILSGVTAEEAGKYTCRVSNEYGY-TETFARVDVINVSSGAVK------HEKPAMFLTRPDTMMSVALGEDISFSFRLA 105 (168)
Q Consensus 33 ~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~ 105 (168)
-|+|.+++..++|.|+-..+...|. ..+.+-|+|.......+. ......+......++....|+++.+...+.
T Consensus 299 vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~L~ 378 (642)
T PHA03281 299 VLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMHLQ 378 (642)
T ss_pred eeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEEEe
Confidence 6999999999999999888865553 344666777553310000 000112333444556677888888777665
Q ss_pred cC--C---CCeEEEee
Q psy16859 106 GS--P---KPKVTWMK 116 (168)
Q Consensus 106 ~~--p---~~~~~W~~ 116 (168)
.. . ...+.|+.
T Consensus 379 s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 379 YKIHDAPFDLLLEWLY 394 (642)
T ss_pred eeccCCCceeEEEEEE
Confidence 32 1 33588986
No 413
>PHA03282 envelope glycoprotein E; Provisional
Probab=77.00 E-value=7.9 Score=28.30 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCCCeEEEEEEEc
Q psy16859 31 LHTLILSGVTAEEAGKYTCRVSN 53 (168)
Q Consensus 31 ~~~l~i~~~~~~d~G~Y~C~~~~ 53 (168)
...|.|.|+..+++|.|.|++..
T Consensus 332 ~VdL~F~nAp~saSGLYVfVl~y 354 (540)
T PHA03282 332 TVNLQLRDASEASGGLYVCVVYV 354 (540)
T ss_pred ccceEecCCCcccCceEEEEEEE
Confidence 34899999999999999999874
No 414
>PHA03292 envelope glycoprotein I; Provisional
Probab=76.45 E-value=20 Score=25.50 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=27.2
Q ss_pred CCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 29 NNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 29 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
....-|.|.+.+.+|+|.|...++-........+.+.+
T Consensus 125 e~~vLL~I~~P~~~DSGiY~LRV~Ldga~~aDvF~lsv 162 (413)
T PHA03292 125 ETNVLLNITGPQPADSGAYILRVKLDHAPTADVFGLSA 162 (413)
T ss_pred CcceEEEeCCCCcccceeEEEEEEeCCCccCceeEEEE
Confidence 33457999999999999999999865444434444444
No 415
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=76.40 E-value=11 Score=20.75 Aligned_cols=46 Identities=15% Similarity=0.574 Sum_probs=29.8
Q ss_pred CceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEE
Q psy16859 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVS 52 (168)
Q Consensus 3 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 52 (168)
...|.|..|+..++ .++++...+ ..+++++.+.....+-.|.|...
T Consensus 37 a~~I~Wkln~~~iP--~~qy~~in~--~~SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 37 ASQIVWKLNGEKIP--GSQYRVIND--TVSSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp TTCEEEECSSCEST--CGCEEEEST--TEEEEEESS--SSEEEEEEEEEC
T ss_pred cceEEEEECCEECC--hhHcceeCC--eEEEEEEccCCCCCceEEEEEEc
Confidence 45789999988773 345655544 33688888877666667777643
No 416
>PHA03290 envelope glycoprotein I; Provisional
Probab=75.84 E-value=11 Score=26.14 Aligned_cols=39 Identities=13% Similarity=-0.033 Sum_probs=27.3
Q ss_pred CCEEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEE
Q psy16859 29 NNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVI 67 (168)
Q Consensus 29 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 67 (168)
....-|.|.+.+.+|+|.|...++-.......-+.+.+.
T Consensus 126 e~~vLL~I~~P~~~DSGiY~LRV~Ldga~~sDvF~lsv~ 164 (357)
T PHA03290 126 DAEIIFKINKPGIEDAGIYLLLVQLDHSRLFDGFFLGLN 164 (357)
T ss_pred CcceEEEeCCCCcccCeeEEEEEEeCCCcccceEEEEEE
Confidence 334579999999999999999998554333333444443
No 417
>PHA03189 UL14 tegument protein; Provisional
Probab=73.46 E-value=14 Score=25.41 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=17.7
Q ss_pred EEEEEEcCCCCCCCeEEEEEEEccc
Q psy16859 31 LHTLILSGVTAEEAGKYTCRVSNEY 55 (168)
Q Consensus 31 ~~~l~i~~~~~~d~G~Y~C~~~~~~ 55 (168)
..+|++. +.-+-+|.|.|.+.|..
T Consensus 133 ~ltLtF~-v~t~taG~Y~CvLrN~t 156 (348)
T PHA03189 133 RLTLTFR-VSTSTAGMYECVLRNET 156 (348)
T ss_pred EEEEEEE-EEecccceEEEEecccc
Confidence 4566664 45567899999998864
No 418
>PHA03289 envelope glycoprotein I; Provisional
Probab=73.22 E-value=12 Score=25.94 Aligned_cols=36 Identities=22% Similarity=0.137 Sum_probs=26.4
Q ss_pred EEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEE
Q psy16859 31 LHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV 66 (168)
Q Consensus 31 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 66 (168)
..-|.|.+.+++|+|.|...++-........+.+.+
T Consensus 121 gvLL~I~~Pr~~DSGiYyLRV~Ldga~~sDvF~lsv 156 (352)
T PHA03289 121 GLLLTIIEPRMSDTGIYYIRVSLAGRNKSDIFRTSV 156 (352)
T ss_pred ceEEEeCCCCcccCeeEEEEEEeCCCccCceEEEEE
Confidence 347999999999999999999865444333444444
No 419
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=71.11 E-value=8.7 Score=19.68 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=20.9
Q ss_pred ceEEEEECCEecCCCCCceEEEecCCCEEEEEEcCCCCCCCeEEEEEEEc
Q psy16859 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSN 53 (168)
Q Consensus 4 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 53 (168)
.-+.||-||..+- ++... +|++.+ -.++|+|+.+.
T Consensus 11 LPiswYcN~TRLl------Rlt~~-----Tlt~~~----ltcNFtCV~qS 45 (71)
T PF11049_consen 11 LPISWYCNGTRLL------RLTQQ-----TLTVVT----LTCNFTCVGQS 45 (71)
T ss_pred CcccEEECCceee------eecCC-----eEeeee----eeEEeeecCCC
Confidence 3478998887652 22222 455533 35889998764
No 420
>PHA03283 envelope glycoprotein E; Provisional
Probab=69.87 E-value=16 Score=27.26 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCCCCCeEEEEEEEcc
Q psy16859 29 NNLHTLILSGVTAEEAGKYTCRVSNE 54 (168)
Q Consensus 29 ~~~~~l~i~~~~~~d~G~Y~C~~~~~ 54 (168)
.+...|.+.++..+++|.|.|++...
T Consensus 312 ~~~v~L~f~nap~~~SGLYVfVv~yN 337 (542)
T PHA03283 312 QNRVDLLFKNAPASASGLYVFVLLYN 337 (542)
T ss_pred CCCcceEeccCCcccCceEEEEEEEC
Confidence 34457999999999999999998743
No 421
>PHA03281 envelope glycoprotein E; Provisional
Probab=69.35 E-value=12 Score=28.03 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=21.5
Q ss_pred CCEEEEEEcCCCCCCCeEEEEEEEcc
Q psy16859 29 NNLHTLILSGVTAEEAGKYTCRVSNE 54 (168)
Q Consensus 29 ~~~~~l~i~~~~~~d~G~Y~C~~~~~ 54 (168)
.+...|.+.++..+++|.|.|++...
T Consensus 472 ~n~vdL~F~nApasaSGLYVfVl~yN 497 (642)
T PHA03281 472 DGGSALKFVDAAESLSGLYVFIIHFN 497 (642)
T ss_pred CCCcceEeccCCcccCceEEEEEEEC
Confidence 33457999999999999999998743
No 422
>COG5475 Uncharacterized small protein [Function unknown]
Probab=68.66 E-value=13 Score=18.33 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=14.1
Q ss_pred CeeEEEEEEcCCceeeE
Q psy16859 148 NGTYFIVARNIYGSDRA 164 (168)
Q Consensus 148 ~g~y~C~~~n~~g~~~~ 164 (168)
.|.|.|..++..|....
T Consensus 28 ~Gmy~C~Wf~g~g~~~~ 44 (60)
T COG5475 28 DGMYECRWFDGYGVKRE 44 (60)
T ss_pred CCeEEEEEecCCCcccc
Confidence 39999999999887653
No 423
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=68.14 E-value=5.4 Score=19.29 Aligned_cols=17 Identities=18% Similarity=0.456 Sum_probs=13.2
Q ss_pred CCCCeeEEEEEEcCCce
Q psy16859 145 DDENGTYFIVARNIYGS 161 (168)
Q Consensus 145 ~~d~g~y~C~~~n~~g~ 161 (168)
.+.+..|.|.++|..|.
T Consensus 7 kdssnsflctvqnkng~ 23 (65)
T PF13220_consen 7 KDSSNSFLCTVQNKNGD 23 (65)
T ss_pred ecCCCceEEEEecccHh
Confidence 34467899999998874
No 424
>PHA03286 envelope glycoprotein E; Provisional
Probab=66.94 E-value=16 Score=26.72 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=19.5
Q ss_pred EEEEcCCCCCCCeEEEEEEEcc
Q psy16859 33 TLILSGVTAEEAGKYTCRVSNE 54 (168)
Q Consensus 33 ~l~i~~~~~~d~G~Y~C~~~~~ 54 (168)
.|.+.++..+++|.|.|++...
T Consensus 308 nL~f~nA~~s~SGLYVfVl~yN 329 (492)
T PHA03286 308 SFRLANAQPTDAGLYVVVALYN 329 (492)
T ss_pred ceeecCCCcccCceEEEEEEEC
Confidence 5999999999999999998743
No 425
>PHA03291 envelope glycoprotein I; Provisional
Probab=66.07 E-value=18 Score=25.44 Aligned_cols=37 Identities=19% Similarity=0.150 Sum_probs=27.3
Q ss_pred EEEEEEcCCCCCCCeEEEEEEEcccceeeEEEEEEEE
Q psy16859 31 LHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVI 67 (168)
Q Consensus 31 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 67 (168)
..-|.|.+...+|+|.|...++-........+.|.+.
T Consensus 128 ~vLL~i~~P~~~DsGiYvLRV~vdgat~adlF~lg~~ 164 (401)
T PHA03291 128 QPLLRARGAARAVVGLYVLRVWVEGATNASLFPLGLA 164 (401)
T ss_pred ceEEEecCCCcccceeEEEEEEeCCCcccceEEEeee
Confidence 3469999999999999999998654444444555554
No 426
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=65.24 E-value=17 Score=26.70 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCCCeEEEEEEEcc
Q psy16859 32 HTLILSGVTAEEAGKYTCRVSNE 54 (168)
Q Consensus 32 ~~l~i~~~~~~d~G~Y~C~~~~~ 54 (168)
..|.+.++..+++|.|.|++...
T Consensus 269 ~~l~f~~a~~~~sGLYv~V~~~n 291 (439)
T PF02480_consen 269 VDLQFTNAPESASGLYVFVVYYN 291 (439)
T ss_dssp SSEEESS--GGG-EEEEEEEEET
T ss_pred cceEecCCCcccCceEEEEEEEC
Confidence 46999999999999999998743
No 427
>PHA03240 envelope glycoprotein M; Provisional
Probab=63.20 E-value=16 Score=23.73 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=18.9
Q ss_pred CEEEEEEccCCCCCCeeEEEEEEcCCc
Q psy16859 134 DYVRLTLKRATDDENGTYFIVARNIYG 160 (168)
Q Consensus 134 ~~~~l~i~~~~~~d~g~y~C~~~n~~g 160 (168)
.+++|.|..+..+|.|+|.-.-....|
T Consensus 103 ~NstL~i~~vn~sd~~nYcr~k~~~~g 129 (258)
T PHA03240 103 HNSTLIIAHLNLSDAGEYCRKKCPPKG 129 (258)
T ss_pred ccceEEEEEEeecCcchhhhccCCCCC
Confidence 346899999999999998543333333
No 428
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=56.52 E-value=26 Score=17.87 Aligned_cols=20 Identities=35% Similarity=0.883 Sum_probs=12.1
Q ss_pred ecCCeEEEEEEEccCCCCeEEEee
Q psy16859 93 ALGEDISFSFRLAGSPKPKVTWMK 116 (168)
Q Consensus 93 ~~g~~~~l~C~~~~~p~~~~~W~~ 116 (168)
..|..++|. |.+...+.|++
T Consensus 3 ~~G~N~TL~----Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 3 TVGSNVTLV----GPPDGPVTWYK 22 (63)
T ss_pred eEcCcEEEe----CCCCCceEEEE
Confidence 456666655 43445699983
No 429
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=55.92 E-value=32 Score=18.61 Aligned_cols=56 Identities=16% Similarity=0.258 Sum_probs=34.4
Q ss_pred eEEEEEEEccCCCCeEEEeeCCEeccCCCCcEEEecCCEEEEEEccCCCCCCeeEEEEEEcCCceeeE
Q psy16859 97 DISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRA 164 (168)
Q Consensus 97 ~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~ 164 (168)
...|.+.+.+. ...+.|+.|+..+....... .+.+ .....|.|+-.+....|....
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~~--------~~~~---~~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQPGH--------QLFW---QPDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCCCC--------eEEe---CCCCCeeEEEEEEcCCCCEEE
Confidence 45555666554 44999999999884332111 1222 124578888888877776543
No 430
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=53.91 E-value=2e+02 Score=27.22 Aligned_cols=69 Identities=17% Similarity=0.157 Sum_probs=47.7
Q ss_pred CCCCCeEEEEEEE--cccceeeEEEEEEEEeccCCCcccCCCCeEEecCCcceEeecCCeEEEEEEEccCCCCeEEEeeC
Q psy16859 40 TAEEAGKYTCRVS--NEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKG 117 (168)
Q Consensus 40 ~~~d~G~Y~C~~~--~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~ 117 (168)
+..+.|.|+..+. |..+....+..+.|+.+.. .+.... ....+..|+.++|.+.+...+...+.|..+
T Consensus 1835 Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~---------~L~L~a-s~~~~~~n~~v~fsa~l~~GS~Vtf~w~fG 1904 (2740)
T TIGR00864 1835 TFPDAGTFAIRLNASNAVSGKSASREFFAEEPIF---------GLELKA-SKKIAAIGEKVEFQILLAAGSAVNFRLQIG 1904 (2740)
T ss_pred ecCCCeEEEEEEEEEcccCcceeeeeEEEEEecc---------eEEEec-ccccccCCCEEEEEEEecCCCceEEEEEeC
Confidence 4678899988654 7666666677778865432 222223 334567899999999887767788999875
Q ss_pred C
Q psy16859 118 I 118 (168)
Q Consensus 118 ~ 118 (168)
+
T Consensus 1905 d 1905 (2740)
T TIGR00864 1905 G 1905 (2740)
T ss_pred C
Confidence 4
No 431
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=48.02 E-value=37 Score=17.13 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=19.8
Q ss_pred EeecCCeEEEEEEEccCCCCeEEEeeCC
Q psy16859 91 SVALGEDISFSFRLAGSPKPKVTWMKGI 118 (168)
Q Consensus 91 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~ 118 (168)
.+..|+.+.|...........+.|..++
T Consensus 7 ~~~~g~~v~f~~~~~~g~~~~y~W~fgd 34 (69)
T PF00801_consen 7 YVPTGQPVTFTASSSDGSPVTYSWDFGD 34 (69)
T ss_dssp CEBTTSEEEEEETTTTSSECEEEEE-SS
T ss_pred EEcCCCEEEEEEEccCCCCeEEEEEECC
Confidence 4668888998887743445679999877
No 432
>PHA02935 Hypothetical protein; Provisional
Probab=47.42 E-value=76 Score=20.52 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=21.7
Q ss_pred EEEEcCCCCCCCeEEEEEEEcccceeeE-EEEEEE
Q psy16859 33 TLILSGVTAEEAGKYTCRVSNEYGYTET-FARVDV 66 (168)
Q Consensus 33 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~v 66 (168)
-|.|..++-+|+|.|.=+-.-..|..-. +..+.|
T Consensus 103 clnisslryedsgsykgvshlkdgvivtttmnisv 137 (349)
T PHA02935 103 CLNISSLRYEDSGSYKGVSHLKDGVIVTTTMNISV 137 (349)
T ss_pred EeeccceeeccCCcccCchhhcCceEEEEEEEEEE
Confidence 3666777889999998766555554432 344444
No 433
>PF11327 DUF3129: Protein of unknown function (DUF3129); InterPro: IPR021476 This eukaryotic family of proteins has no known function.
Probab=42.97 E-value=57 Score=20.81 Aligned_cols=38 Identities=24% Similarity=0.482 Sum_probs=26.3
Q ss_pred CCEEEEEEcCCCCCCCeEEEEEEEcc-cceeeEEEEEEE
Q psy16859 29 NNLHTLILSGVTAEEAGKYTCRVSNE-YGYTETFARVDV 66 (168)
Q Consensus 29 ~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~~l~v 66 (168)
++...+++..+..+-+|-|+|.+... .+.......+.|
T Consensus 90 gG~i~mt~hQVN~DGaGP~~C~iD~tg~g~~~~~~~~~v 128 (184)
T PF11327_consen 90 GGSISMTIHQVNADGAGPFTCDIDETGTGTFSNFTPLTV 128 (184)
T ss_pred CCEEEEEEEEecCCCCcCeEEEECCCCCccccccEeceE
Confidence 66678888889888899999999754 333123334444
No 434
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=37.58 E-value=1.1e+02 Score=19.50 Aligned_cols=52 Identities=12% Similarity=0.213 Sum_probs=30.7
Q ss_pred CceEEEEECCEecCCCCC-ceE--EEecC--CCEEEEEEcCCCCCCCeEEEEEEEcc
Q psy16859 3 KPEVIWLRGNTPLPKSSP-RFK--YIEDS--NNLHTLILSGVTAEEAGKYTCRVSNE 54 (168)
Q Consensus 3 ~p~v~W~~~~~~~~~~~~-~~~--~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~ 54 (168)
.|.++|--+...|..+.- ... +.... ...+.+.|.+..-.|.-.|.|.+...
T Consensus 122 ~PtitWsVgs~rl~n~gftqtwy~iqPGvCgilrS~v~~~R~~G~~~~~y~c~~~~~ 178 (226)
T PF05955_consen 122 QPTITWSVGSDRLRNDGFTQTWYGIQPGVCGILRSEVRIPRAEGRDNVDYLCEIRAL 178 (226)
T ss_pred CCeEEEEeccceeecCCccceeecccCcceeeEeeeeecccCCCCCcccEEeccccc
Confidence 689999887766632221 111 11110 11234677777888888999988744
No 435
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=35.70 E-value=4.1e+02 Score=25.54 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=44.5
Q ss_pred CCCCeEEEEEEE--cccceeeEEEEEEEEeccCCCcccCCCCeEEecCCcceEeecCCeEEEEEEEccCCCCeEEEeeCC
Q psy16859 41 AEEAGKYTCRVS--NEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGI 118 (168)
Q Consensus 41 ~~d~G~Y~C~~~--~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~ 118 (168)
..+.|.|...+. |..|....+..+.|+.+.. .+.... ....+..|..+++.-.........+.|..++
T Consensus 1666 ~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~epi~---------~L~L~a-S~~~aavn~~V~fs~~lt~GS~vty~W~~gd 1735 (2740)
T TIGR00864 1666 PLEAGPCDIFLQAANLLGQATADCTIDFLEPAG---------NLMLQA-SDNPAAVNALINLSAELAEGSGLQYRWFLEE 1735 (2740)
T ss_pred cCCCceEEEEEEEeecccceeeEEEEEEEEEcC---------ceEEec-cCCcccCCCeEEEEEEecCCCCcEEEEEECC
Confidence 467798877654 7777777777777754321 122222 1234567888998877777677889999755
No 436
>KOG1026|consensus
Probab=27.81 E-value=32 Score=27.28 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=26.5
Q ss_pred eEeecCCeEEEEEEEccCCCCeEEEeeCCEec
Q psy16859 90 MSVALGEDISFSFRLAGSPKPKVTWMKGIKDI 121 (168)
Q Consensus 90 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~ 121 (168)
..+..+..+++.|...+.|.+...|+..+...
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~ 233 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLAS 233 (774)
T ss_pred hhhcccchheeeeecccCCCcceeeecccccc
Confidence 55678889999999999999999999765443
No 437
>PF10572 UPF0556: Uncharacterised protein family UPF0556; InterPro: IPR018887 This family of proteins has no known function.
Probab=27.27 E-value=1.5e+02 Score=18.42 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=11.2
Q ss_pred CCCCeeEEEEEEcCCc
Q psy16859 145 DDENGTYFIVARNIYG 160 (168)
Q Consensus 145 ~~d~g~y~C~~~n~~g 160 (168)
.+|.+.|+|.+..+.|
T Consensus 69 s~d~~~~sC~I~RPqg 84 (158)
T PF10572_consen 69 SDDNGHYSCIIWRPQG 84 (158)
T ss_pred cCCCCceEEEEECCCC
Confidence 4466778888877765
No 438
>PF15096 G6B: G6B family
Probab=26.11 E-value=40 Score=21.47 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=16.9
Q ss_pred CCCCCeEEEEEEEcccceeeEEEEEEEEe
Q psy16859 40 TAEEAGKYTCRVSNEYGYTETFARVDVIN 68 (168)
Q Consensus 40 ~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 68 (168)
...|+|+|.|...+.. .+-..|.|..
T Consensus 82 s~GDSGTFfCkGr~e~---ESRT~LhVLG 107 (224)
T PF15096_consen 82 SAGDSGTFFCKGRQEE---ESRTVLHVLG 107 (224)
T ss_pred hcCCccceEecCcccc---cceeeeeeec
Confidence 4689999999976532 2333466654
No 439
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=25.53 E-value=38 Score=14.98 Aligned_cols=10 Identities=30% Similarity=0.693 Sum_probs=7.2
Q ss_pred CCCCeEEEEE
Q psy16859 41 AEEAGKYTCR 50 (168)
Q Consensus 41 ~~d~G~Y~C~ 50 (168)
..+.|.|.|.
T Consensus 20 ~~~dG~~yC~ 29 (36)
T PF11781_consen 20 YSDDGFYYCD 29 (36)
T ss_pred EccCCEEEhh
Confidence 3567899983
No 440
>PF05566 Pox_vIL-18BP: Orthopoxvirus interleukin 18 binding protein; InterPro: IPR008791 Interleukin-18 (IL-18) is a proinflammatory cytokine that plays a key role in the activation of natural killer and T helper 1 cell responses principally by inducing interferon-gamma (IFN-gamma). Several poxvirus genes encode proteins with sequence similarity to IL-18BPs. It has been shown that vaccinia, ectromelia and cowpox viruses secrete from infected cells a soluble IL-18BP (vIL-18BP) that may modulate the host antiviral response. The expression of vIL-18BPs by distinct poxvirus genera that cause local or general viral dissemination, or persistent or acute infections in the host, emphasises the importance of IL-18 in response to viral infections [].; PDB: 3F62_A.
Probab=24.82 E-value=1.5e+02 Score=17.12 Aligned_cols=30 Identities=13% Similarity=0.121 Sum_probs=22.1
Q ss_pred EEEEccCCCCCCeeEEEEEEcCCceeeEEE
Q psy16859 137 RLTLKRATDDENGTYFIVARNIYGSDRAFV 166 (168)
Q Consensus 137 ~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~ 166 (168)
.|.+.....-+.-.|+|+.....|.....+
T Consensus 94 vL~vt~t~Kf~h~rfTCVL~t~DGvskk~i 123 (126)
T PF05566_consen 94 VLHVTDTEKFAHYRFTCVLTTIDGVSKKNI 123 (126)
T ss_dssp EEEE--TTTTTTEEEEEEEEETTEEEEE--
T ss_pred eeeecchhhccceeEEEEEEcCCccccccc
Confidence 577788888888999999999988776554
No 441
>CHL00039 psbF photosystem II protein VI
Probab=23.89 E-value=32 Score=15.23 Aligned_cols=9 Identities=44% Similarity=0.711 Sum_probs=6.1
Q ss_pred CCCceEEEE
Q psy16859 1 YVKPEVIWL 9 (168)
Q Consensus 1 ~p~p~v~W~ 9 (168)
||-.++.|.
T Consensus 7 yPifTvRwl 15 (39)
T CHL00039 7 YPIFTVRWL 15 (39)
T ss_pred ccceEeehh
Confidence 566677775
No 442
>PHA03298 envelope glycoprotein L; Provisional
Probab=23.35 E-value=62 Score=19.22 Aligned_cols=14 Identities=14% Similarity=0.479 Sum_probs=10.0
Q ss_pred CCceEEEEECCEec
Q psy16859 2 VKPEVIWLRGNTPL 15 (168)
Q Consensus 2 p~p~v~W~~~~~~~ 15 (168)
|+..|.||++|...
T Consensus 94 ~pEvI~wyksGtA~ 107 (167)
T PHA03298 94 NPEAIFWYKNGTAA 107 (167)
T ss_pred CceeEEEecCCceE
Confidence 45578899988543
Done!