RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16859
(168 letters)
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 123 bits (311), Expect = 2e-36
Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 7/167 (4%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
KP V W R + +++ E H LI++ VT ++A Y R +N+ G A
Sbjct: 33 KPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTA 92
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
++V L + GE +S +G P P +TW KG I
Sbjct: 93 SLEVE-----VPAKIHLPKTLEGMGA-VHALRGEVVSIKIPFSGKPDPVITWQKGQDLID 146
Query: 123 TSSR-TMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ + T + + + G Y + A+N +G D+ V +
Sbjct: 147 NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193
Score = 66.7 bits (163), Expect = 2e-14
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P + W +G + ++ ++ I + + +GV ++AG Y N +G +
Sbjct: 133 DPVITWQKGQDLI-DNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTV 191
Query: 63 RVDVI 67
+DV
Sbjct: 192 ELDVA 196
Score = 62.4 bits (152), Expect = 8e-13
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Query: 82 FLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRT--MTETVNDYVRLT 139
F + +V + + ++ G PKP V W + K+I + E Y +L
Sbjct: 7 FKEELRNL-NVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI 65
Query: 140 LKRATDDENGTYFIVARNIYGSDR--AFVTV 168
+ TDD+ Y + A N GS A + V
Sbjct: 66 IASVTDDDATVYQVRATNQGGSVSGTASLEV 96
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 123 bits (311), Expect = 4e-35
Identities = 31/177 (17%), Positives = 69/177 (38%), Gaps = 13/177 (7%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+V W + + + S R K + L ++ T + GKY + + +
Sbjct: 137 DLKVNWSHNGSAI-RYSDRVK-TGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTV 194
Query: 63 RVDV----------INVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKV 112
+ + A+ + A L ++++ G+ ++ + + G P P+V
Sbjct: 195 DLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEV 254
Query: 113 TWMKGIKDITTSSR-TMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+W+K K + + + T+ + ++G Y +V +N YGS+ + TV
Sbjct: 255 SWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTV 311
Score = 102 bits (255), Expect = 5e-27
Identities = 25/165 (15%), Positives = 60/165 (36%), Gaps = 5/165 (3%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
++W + + + + + + TL+++ + ++AG Y + ++ G ++ +
Sbjct: 37 THIVWYKDEREIS-VDEKHDF---KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLK 92
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITT 123
+ ++ K + S A G + +SF KV W I
Sbjct: 93 LVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQL-YSFVTYYVEDLKVNWSHNGSAIRY 151
Query: 124 SSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
S R T + + L + T ++ G Y + + + V +
Sbjct: 152 SDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDL 196
Score = 69.9 bits (171), Expect = 5e-15
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
PEV WL+ L S ++ ++GV+ ++GKY V N+YG +
Sbjct: 251 PPEVSWLKNEKALA-SDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDF 309
Query: 63 RVDVI 67
V V
Sbjct: 310 TVSVF 314
Score = 55.3 bits (133), Expect = 8e-10
Identities = 12/96 (12%), Positives = 36/96 (37%), Gaps = 5/96 (5%)
Query: 74 VKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPK-PKVTWMKGIKDITTSSRTMTETV 132
+ F+ V ++ ++A K + W K ++I+ + +
Sbjct: 2 IDPFTGPHFVEYLSWE--VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK-- 57
Query: 133 NDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ L + + + G Y ++ ++ G D++ + +
Sbjct: 58 DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL 93
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 119 bits (301), Expect = 7e-35
Identities = 41/169 (24%), Positives = 63/169 (37%), Gaps = 15/169 (8%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P++ W R L S ++K + HTL + E+ G YTC +NE G ET +
Sbjct: 36 LPDIKWYRFGKELI-QSRKYK-MSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSS 93
Query: 63 RVDVINVSSGAVKHEKPAMFLTRP-DTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDI 121
++ + P P A+G + G P P +TW G K +
Sbjct: 94 KLLL---------QATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLL 144
Query: 122 TTSSRTMTETVNDYVRLTLKRAT--DDENGTYFIVARNIYGSDRAFVTV 168
S E Y L +K G Y + N++G+ A + V
Sbjct: 145 QNSENITIENTEHYTHLVMKNVQRKTHA-GKYKVQLSNVFGTVDAILDV 192
Score = 67.4 bits (165), Expect = 1e-14
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 2/97 (2%)
Query: 72 GAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTET 131
GA+ E P + + LGE S ++ G P P + W + K++ S + +
Sbjct: 1 GAMSGEAPG-IRKEMKDV-TTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSS 58
Query: 132 VNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
LT+ ++ G Y +A N G +
Sbjct: 59 DGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKL 95
Score = 64.3 bits (157), Expect = 1e-13
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEE-AGKYTCRVSNEYGYTETF 61
P + W G L +S IE++ + L++ V + AGKY ++SN +G +
Sbjct: 132 VPAMTWFHGQKLLQ-NSENIT-IENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAI 189
Query: 62 ARVDV 66
V++
Sbjct: 190 LDVEI 194
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 118 bits (298), Expect = 3e-34
Identities = 30/178 (16%), Positives = 67/178 (37%), Gaps = 15/178 (8%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+V W + + + S R K + L ++ T + GKY + + +
Sbjct: 32 DLKVNWSHNGSAI-RYSDRVK-TGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTV 89
Query: 63 RVDVINVSSGA-----------VKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPK 111
+ + + + PD +++ G+ ++ + + G P P+
Sbjct: 90 DLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDV-VTIQEGKALNLTCNVWGDPPPE 148
Query: 112 VTWMKGIKDITTSSR-TMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
V+W+K K + + + T+ + ++G Y +V +N YGS+ + TV
Sbjct: 149 VSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTV 206
Score = 74.5 bits (183), Expect = 3e-17
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
PEV WL+ L + ++ ++GV+ ++GKY V N+YG +
Sbjct: 146 PPEVSWLKNEKAL-AQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDF 204
Query: 63 RVDVI 67
V V
Sbjct: 205 TVSVF 209
Score = 55.6 bits (134), Expect = 3e-10
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
Query: 95 GEDISF-SFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFI 153
E I SF KV W I S R T + + L + T ++ G Y +
Sbjct: 17 AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVM 76
Query: 154 VARNIYGSDRAFVTV 168
+ + V +
Sbjct: 77 ELFDGKTGHQKTVDL 91
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 119 bits (300), Expect = 8e-34
Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 12/166 (7%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
++ W + N + +K N TL + VT +AG+YTC SN G A
Sbjct: 34 PIKITWAKDNREIR-PGGNYKMTLVENT-ATLTVLKVTKGDAGQYTCYASNVAGKDSCSA 91
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
++ V E P F+ + + V E + ++ GSP+ KV W K +I
Sbjct: 92 QLGV---------QEPP-RFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQ 141
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
SS+ V L + + +++G Y A N GS + ++
Sbjct: 142 ESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSL 187
Score = 116 bits (293), Expect = 9e-33
Identities = 32/166 (19%), Positives = 67/166 (40%), Gaps = 13/166 (7%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+ +V+W + T + S +F+ + L + ++ E++G YTC N G +
Sbjct: 128 EIKVLWYKDETEIQ-ESSKFRMSFVESV-AVLEMYNLSVEDSGDYTCEAHNAAGSASSST 185
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
+ V ++P +F +P + G D+ L G+P +V+W K +++
Sbjct: 186 SLKV----------KEPPVFRKKPHPV-ETLKGADVHLECELQGTPPFQVSWHKDKRELR 234
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ + + N + + + G Y A N GS ++
Sbjct: 235 SGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSI 280
Score = 66.7 bits (163), Expect = 7e-14
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 79 PAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRL 138
P F +P ++ +ALGE +F + G+ K+TW K ++I V + L
Sbjct: 5 PPFFDLKPVSVD-LALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 139 TLKRATDDENGTYFIVARNIYGSDR--AFVTV 168
T+ + T + G Y A N+ G D A + V
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 95
Score = 64.8 bits (158), Expect = 3e-13
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+V W + L S ++K I N L ++ + V + + G+Y C+ SN+ G
Sbjct: 221 PFQVSWHKDKRELR-SGKKYK-IMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVG 278
Query: 63 RVDV 66
+ +
Sbjct: 279 SITL 282
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 114 bits (288), Expect = 6e-33
Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 8/166 (4%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
PEV W R + S+ I S+ L + VT +G+Y+ + +N G + A
Sbjct: 34 VPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTA 93
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
+ V P F+ R + M+V G + R+ G P P V + + +I
Sbjct: 94 ELLV-------KAETAPPNFVQRLQS-MTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQ 145
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+S D L + A +++GTY + A N G + +
Sbjct: 146 SSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
Score = 67.1 bits (164), Expect = 1e-14
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P V + R + +SS F+ I +L++L+++ E++G Y+ +N G + A
Sbjct: 132 TPVVKFYRDGAEI-QSSLDFQ-ISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTA 189
Query: 63 RVDV 66
+ V
Sbjct: 190 ELLV 193
Score = 64.0 bits (156), Expect = 2e-13
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 77 EKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMT--ETVND 134
+ F +++ V G +F ++G P P+V+W + + I+TS+ +
Sbjct: 3 TQAPTFTQPLQSVV-VLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG 61
Query: 135 YVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+LT+ T +G Y + A N G + +
Sbjct: 62 RAKLTIPAVTKANSGRYSLKATNGSGQATSTAEL 95
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 117 bits (295), Expect = 2e-31
Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 14/168 (8%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
++ W + N + +K N TL + VT +AG+YTC SN G A
Sbjct: 226 PIKITWAKDNREIR-PGGNYKMTLVENT-ATLTVLKVTKGDAGQYTCYASNVAGKDSCSA 283
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
++ V ++P F+ + + V E + ++ GSP+ KV W K +I
Sbjct: 284 QLGV----------QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQ 333
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDR--AFVTV 168
SS+ V L + + +++G Y A N GS + V
Sbjct: 334 ESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV 381
Score = 114 bits (286), Expect = 3e-30
Identities = 34/166 (20%), Positives = 66/166 (39%), Gaps = 13/166 (7%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+ +V+W + T + S +F+ + L + ++ E++G YTC N G +
Sbjct: 320 EIKVLWYKDETEIQ-ESSKFRMSFVESV-AVLEMYNLSVEDSGDYTCEAHNAAGSASSST 377
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
+ V E P F +P + G D+ L G+P +V+W K +++
Sbjct: 378 SLKV---------KEPPV-FRKKPHPV-ETLKGADVHLECELQGTPPFQVSWHKDKRELR 426
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ + + N + + + G Y A N GSD ++
Sbjct: 427 SGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSI 472
Score = 114 bits (286), Expect = 3e-30
Identities = 39/166 (23%), Positives = 65/166 (39%), Gaps = 10/166 (6%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+V W + L + N TL + G+Y C SN G + A
Sbjct: 130 PLQVSWYKDGELLK-DDANLQTSFIHNV-ATLQILQTDQSHVGQYNCSASNPLGTASSSA 187
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
++ + +HE P F +P ++ +ALGE +F + G+ K+TW K ++I
Sbjct: 188 KLTLS-------EHEVPPFFDLKPVSV-DLALGESGTFKCHVTGTAPIKITWAKDNREIR 239
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
V + LT+ + T + G Y A N+ G D +
Sbjct: 240 PGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL 285
Score = 110 bits (277), Expect = 4e-29
Identities = 35/167 (20%), Positives = 68/167 (40%), Gaps = 14/167 (8%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+V W + L S ++K I N L ++ + V + + G+Y C+ SN+ G
Sbjct: 413 PFQVSWHKDKRELR-SGKKYK-IMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVG 470
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
+ + + P F+ + + +S +GE++ + G+ V W K +I
Sbjct: 471 SITL----------KAPPRFVKKL-SDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIV 519
Query: 123 TSSRTMTETVNDYV-RLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
S + + ++ + L RA G Y +N G+ F T+
Sbjct: 520 RESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATL 566
Score = 109 bits (273), Expect = 1e-28
Identities = 34/166 (20%), Positives = 72/166 (43%), Gaps = 10/166 (6%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+ + W + +T L +S+P +K +N +L+++ V + G+YTC+ N G + A
Sbjct: 34 EIRIAWYKEHTKL-RSAPAYKMQFKNNV-ASLVINKVDHSDVGEYTCKAENSVGAVASSA 91
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
+ + + + P F + + LG ++F R+ GS +V+W K + +
Sbjct: 92 VLVIK-------ERKLPPSFARKLKDV-HETLGFPVAFECRINGSEPLQVSWYKDGELLK 143
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ T +++ L + + G Y A N G+ + +
Sbjct: 144 DDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKL 189
Score = 66.8 bits (163), Expect = 1e-13
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
V W + + + S N TL S AGKYTC++ NE G E FA
Sbjct: 506 PISVAWFKDKGEIVRESDNIWISYSENI-ATLQFSRAEPANAGKYTCQIKNEAGTQECFA 564
Query: 63 RVDVI 67
+ V+
Sbjct: 565 TLSVL 569
Score = 61.0 bits (148), Expect = 1e-11
Identities = 17/91 (18%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 78 KPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVR 137
+P F+ + + A+GE I+ ++ G+P+ ++ W K + ++ + N+
Sbjct: 4 EPPYFIEPLEHV-EAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVAS 62
Query: 138 LTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
L + + + G Y A N G+ + +
Sbjct: 63 LVINKVDHSDVGEYTCKAENSVGAVASSAVL 93
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 112 bits (283), Expect = 5e-31
Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 7/167 (4%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
KP V W R + +++ E H LI++ VT ++A Y R +N+ G A
Sbjct: 33 KPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTA 92
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
++V K P L + GE +S +G P P +TW KG I
Sbjct: 93 SLEVEV----PAKIHLPK-TLEGMGA-VHALRGEVVSIKIPFSGKPDPVITWQKGQDLID 146
Query: 123 TSSRTMTETVNDYVRLTLKRATDDEN-GTYFIVARNIYGSDRAFVTV 168
+ + L + ++ G Y + A+N +G D+ V +
Sbjct: 147 NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193
Score = 62.9 bits (153), Expect = 2e-12
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 82 FLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSR--TMTETVNDYVRLT 139
F + +V + + ++ G PKP V W + K+I + E Y +L
Sbjct: 7 FKEELRNL-NVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI 65
Query: 140 LKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ TDD+ Y + A N GS ++
Sbjct: 66 IASVTDDDATVYQVRATNQGGSVSGTASL 94
Score = 59.8 bits (145), Expect = 2e-11
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P + W +G + ++ ++ I + + +GV ++AG Y N +G +
Sbjct: 133 DPVITWQKGQDLI-DNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTV 191
Query: 63 RVDVI 67
+DV
Sbjct: 192 ELDVA 196
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 108 bits (271), Expect = 6e-30
Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 21/180 (11%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P + WL+ + R I+ + +L++ V + G YTC V N++G
Sbjct: 44 TPSISWLKNGREF-RGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTY 102
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMK------ 116
+DV+ +P + P + LG D+ F ++ +P + W+K
Sbjct: 103 TLDVL-----ERSPHRPILQAGLPAN-QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNG 156
Query: 117 ------GIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDR--AFVTV 168
G +T ++E+V VRL L ++ + G Y A N G +++V
Sbjct: 157 SKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSV 216
Score = 56.9 bits (137), Expect = 1e-10
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Query: 70 SSGAVKHEKPAMFLTRPDTM----MSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSS 125
+ + A + TRP+ M ++V + F AG+P P ++W+K ++
Sbjct: 1 ADPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH 60
Query: 126 RT-MTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
R + + L ++ + G Y V N +GS R T+
Sbjct: 61 RIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTL 104
Score = 55.3 bits (133), Expect = 5e-10
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 10/75 (13%)
Query: 3 KPEVIWLRGNTPLPK----------SSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVS 52
+P + WL+ + + E L L+ V+ + G+Y CR +
Sbjct: 143 QPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRAT 202
Query: 53 NEYGYTETFARVDVI 67
N G E + V
Sbjct: 203 NFIGVAEKAFWLSVH 217
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 107 bits (269), Expect = 9e-30
Identities = 39/179 (21%), Positives = 65/179 (36%), Gaps = 20/179 (11%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P + WL+ R + N +LI+ V + G YTC V NEYG
Sbjct: 48 MPTMRWLKNGKEFK-QEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY 106
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKD-- 120
+DV+ S +P + P S +G D+ F ++ +P + W+K ++
Sbjct: 107 HLDVVERS-----RHRPILQAGLPAN-ASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNG 160
Query: 121 ---------ITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDR--AFVTV 168
+ ++ L L T+ + G Y N G A++TV
Sbjct: 161 SKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219
Score = 58.0 bits (140), Expect = 6e-11
Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 4/105 (3%)
Query: 68 NVSSGAVKHEKPAMFLTRPD---TMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTS 124
+ S +++ + + +V + F G+P P + W+K K+
Sbjct: 4 DFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE 63
Query: 125 SRT-MTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
R + N + L ++ + G Y V N YGS +
Sbjct: 64 HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 108
Score = 55.7 bits (134), Expect = 3e-10
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 3 KPEVIWLRGNTPLPKS----------SPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVS 52
+P + W++ + I SN L L VT +AG+Y C+VS
Sbjct: 147 QPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNA-EVLALFNVTEADAGEYICKVS 205
Query: 53 NEYGYTETFARVDVI 67
N G A + V+
Sbjct: 206 NYIGQANQSAWLTVL 220
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 102 bits (257), Expect = 3e-28
Identities = 27/175 (15%), Positives = 61/175 (34%), Gaps = 25/175 (14%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+P + W R + + ++ + L + + + G Y CR +N+ G E A
Sbjct: 33 EPAISWFRNGKLIE-ENEKYILKGSN---TELTVRNIINSDGGPYVCRATNKAGEDEKQA 88
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
+ V +P + + + ++ G P P++TW + + T
Sbjct: 89 FLQV---------FVQP-HIIQLKNE--TTYENGQVTLVCDAEGEPIPEITWKRAVDGFT 136
Query: 123 TS-------SRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDR--AFVTV 168
+ R + + L +K ++G Y A + G + ++ +
Sbjct: 137 FTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191
Score = 55.2 bits (133), Expect = 4e-10
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 79 PAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRL 138
PA+ + + + GE+++FS R +GSP+P ++W + K I + + + + N L
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT--EL 60
Query: 139 TLKRATDDENGTYFIVARNIYGSDRAFVTV 168
T++ + + G Y A N G D +
Sbjct: 61 TVRNIINSDGGPYVCRATNKAGEDEKQAFL 90
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 104 bits (260), Expect = 1e-27
Identities = 34/181 (18%), Positives = 63/181 (34%), Gaps = 22/181 (12%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P + WL+ +L++ V + G YTC V N++G
Sbjct: 152 TPSISWLKNGREFRGEHRIGGIKLRHQQ-WSLVMESVVPSDRGNYTCVVENKFGSIRQTY 210
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKD-- 120
+DV+ +P + P + LG D+ F ++ +P + W+K ++
Sbjct: 211 TLDVL-----ERSPHRPILQAGLPAN-QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNG 264
Query: 121 -----------ITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDR--AFVT 167
+ T + L+L T ++ G Y +A N G A++
Sbjct: 265 SKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV 324
Query: 168 V 168
V
Sbjct: 325 V 325
Score = 90.4 bits (224), Expect = 2e-22
Identities = 38/181 (20%), Positives = 66/181 (36%), Gaps = 21/181 (11%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+W++ T L S R L + + E++G Y+CR F+
Sbjct: 38 MGPTVWVKDGTGLV-PSERVLVGP-----QRLQVLNASHEDSGAYSCRQRLTQRVLCHFS 91
Query: 63 RVDVINVSSG----------AVKHEKPAMFLTRPDTM----MSVALGEDISFSFRLAGSP 108
SSG + A + TRP+ M ++V + F AG+P
Sbjct: 92 VRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNP 151
Query: 109 KPKVTWMKGIKDITTSSR-TMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVT 167
P ++W+K ++ R + + L ++ + G Y V N +GS R T
Sbjct: 152 TPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYT 211
Query: 168 V 168
+
Sbjct: 212 L 212
Score = 56.9 bits (137), Expect = 2e-10
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 3 KPEVIWLRGNTPL-----PKSSPRFKYIEDSN------NLHTLILSGVTAEEAGKYTCRV 51
+P + WL+ P +P ++ + L L L VT E+AG+YTC
Sbjct: 251 QPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLA 310
Query: 52 SNEYGYTETFARVDVI 67
N G++ A + V+
Sbjct: 311 GNSIGFSHHSAWLVVL 326
Score = 50.4 bits (120), Expect = 4e-08
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 6/90 (6%)
Query: 77 EKPAMFLTRPDTMMSVALGEDISFS-FRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDY 135
E P + + + G+ + S G P W+K + S R +
Sbjct: 6 EVPGPEPGQQEQL-VFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQR-- 62
Query: 136 VRLTLKRATDDENGTYFIVARNIYGSDRAF 165
L + A+ +++G Y R F
Sbjct: 63 --LQVLNASHEDSGAYSCRQRLTQRVLCHF 90
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 104 bits (260), Expect = 3e-27
Identities = 32/169 (18%), Positives = 62/169 (36%), Gaps = 18/169 (10%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF- 61
+ + + + + + L+ E+ G YTC V N G +
Sbjct: 241 MGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHS 300
Query: 62 ARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDI 121
++ V P + +P+ ++ V G+D++ ++ G P P V W K +
Sbjct: 301 LKLTV---------VSAPK-YEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL 350
Query: 122 TTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDR--AFVTV 168
+ T+T++ L +K + + G Y A N +G V V
Sbjct: 351 SGGRATVTDSG-----LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 88.0 bits (218), Expect = 3e-21
Identities = 29/176 (16%), Positives = 49/176 (27%), Gaps = 10/176 (5%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKY-----IEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGY 57
KP + W + + ++ + NL+ I++ + KY C N
Sbjct: 130 KPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVD 189
Query: 58 TETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKG 117
E I + K M G+ +P + K
Sbjct: 190 EEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKN 249
Query: 118 IKDITTSS--RTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDR---AFVTV 168
KD+ + R RL K ++ G Y N G + +TV
Sbjct: 250 GKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV 305
Score = 66.9 bits (163), Expect = 9e-14
Identities = 20/168 (11%), Positives = 40/168 (23%), Gaps = 21/168 (12%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
+ W + +D +L+ A + G Y C G
Sbjct: 37 VKYSWKKDGKSYNWQEHNAALRKDEG---SLVFLRPQASDEGHYQCFAETPAG------- 86
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLA-GSPKPKVTWMKGIKDIT 122
V + + + + + G L PKP +TW K +
Sbjct: 87 --VASSRVISFRKTYLIASPAKTHE-KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGAD 143
Query: 123 TSSRTMTETVNDYVR-------LTLKRATDDENGTYFIVARNIYGSDR 163
++ + + + Y A+N +
Sbjct: 144 PNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEE 191
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 101 bits (254), Expect = 6e-27
Identities = 21/177 (11%), Positives = 64/177 (36%), Gaps = 16/177 (9%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKY-IEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
+V ++ + P++K I+ + + + + + E+ G YT ++ + +
Sbjct: 137 NAKVNYIFNEKEI-FEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHST 195
Query: 62 ARVDVINVSSGAVKHE---------KPAMFLTRPDTMMSVALGEDISFSFRLAGSPKP-K 111
+ + E + F+ V ++ ++A K
Sbjct: 196 VVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS--WEVTGECNVLLKCKVANIKKETH 253
Query: 112 VTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ W K ++I+ + + + L + + + G Y ++ ++ G D++ + +
Sbjct: 254 IVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL 308
Score = 98.9 bits (246), Expect = 1e-25
Identities = 26/170 (15%), Positives = 70/170 (41%), Gaps = 6/170 (3%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
K E W + + SPR + +E N + + ++ G Y+C V++ G ++
Sbjct: 31 KSEFSWSKDYVST-EDSPRLE-VESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYL 88
Query: 63 RV--DVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKD 120
++ + + + +H+ P + + + + G+ + S KV ++ K+
Sbjct: 89 IDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKE 148
Query: 121 ITTSSRTMTETVND--YVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
I + + + + +++ D++ GTY ++ ++ + V +
Sbjct: 149 IFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVL 198
Score = 58.1 bits (140), Expect = 9e-11
Identities = 7/63 (11%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
++W + + + + + TL+++ + ++AG Y + ++ G ++ +
Sbjct: 252 THIVWYKDEREISVDE----KHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLK 307
Query: 64 VDV 66
+
Sbjct: 308 LVD 310
Score = 57.7 bits (139), Expect = 1e-10
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 3/92 (3%)
Query: 77 EKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYV 136
P F + ++F +PK + +W K S R E+ +
Sbjct: 2 IDP--FTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKT 58
Query: 137 RLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
++T K D+ G Y + G +++
Sbjct: 59 KMTFKDLGMDDLGIYSCDVTDTDGIASSYLID 90
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 98.7 bits (246), Expect = 2e-26
Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 10/172 (5%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+P+++W + + +D + I T + Y C SN G
Sbjct: 35 RPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVST 94
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
R+ V P V + +G+P P++TW K +
Sbjct: 95 RL---TVLREDQIPRGFPTIDMGPQL-KVVERTRTATMLCAASGNPDPEITWFKDFLPVD 150
Query: 123 TSS---RTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSD---RAFVTV 168
TS+ R L ++++ + + G Y VA N G+ A + V
Sbjct: 151 TSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYV 202
Score = 56.0 bits (135), Expect = 2e-10
Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 6/96 (6%)
Query: 76 HEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVND- 134
P F P + G SF + G P+PK+ W K K ++ + E +
Sbjct: 4 ETPP-RFTRTPVDQ-TGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGS 61
Query: 135 --YVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+R+ R DE Y VA N G +
Sbjct: 62 GSVLRIQPLRTPRDE-AIYECVASNNVGEISVSTRL 96
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 103 bits (257), Expect = 2e-26
Identities = 29/170 (17%), Positives = 49/170 (28%), Gaps = 20/170 (11%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLH----TLILSGVTAEEAGKYTCRVSNEYGYT 58
+ W N L + + +N +S V + G YTC S +
Sbjct: 257 GFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS 316
Query: 59 ETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGI 118
A V + EK + T + E+ FS R P+ + TW
Sbjct: 317 ---ALVTI---------VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSR 364
Query: 119 KDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
K + + + ++ + G Y A N T+
Sbjct: 365 KSFPCEQKGLDNGYS----ISKFCNHKHQPGEYIFHAENDDAQFTKMFTL 410
Score = 87.8 bits (217), Expect = 4e-21
Identities = 24/177 (13%), Positives = 45/177 (25%), Gaps = 36/177 (20%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+ W P +N +++ + G+Y N+
Sbjct: 355 QIRCTWTFSRKSFPCEQKGL------DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMF 408
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
+++ KP + +A S G P P TW K
Sbjct: 409 TLNI---------RRKPQV----------LAEASASQASCFSDGYPLPSWTWKKCSDKSP 449
Query: 123 TSSRTMTETVNDY-----------VRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ +TE V + TL + + A N G+ + +
Sbjct: 450 NCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILL 506
Score = 81.7 bits (201), Expect = 6e-19
Identities = 22/162 (13%), Positives = 47/162 (29%), Gaps = 19/162 (11%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+W+ ++ L P F + + ++++ +T +AG+Y + +E
Sbjct: 77 NISCLWVFKHSSLN-CQPHFDL--QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILF 133
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
V + L RP + + P+P V W+
Sbjct: 134 TVSI---------RNTLLYTLRRPYF---RKMENQDALVCISESVPEPIVEWVLCDSQGE 181
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRA 164
+ V ++ + ARN G +
Sbjct: 182 SCKEESPAVVKKEEKVLHE----LFGTDIRCCARNELGRECT 219
Score = 64.7 bits (157), Expect = 5e-13
Identities = 13/135 (9%), Positives = 38/135 (28%), Gaps = 6/135 (4%)
Query: 39 VTAEEAGKYTC----RVSNEYGYTETFARVDVINVSSGAVKHEKP-AMFLTRPDTMMSVA 93
++ C +N+ ++ + V +P + + V
Sbjct: 2 TGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVD 61
Query: 94 LGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFI 153
+ I+ + W+ + + V + + + T+ + G Y +
Sbjct: 62 VSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQN-RGVVSMVILKMTETQAGEYLL 120
Query: 154 VARNIYGSDRAFVTV 168
++ + TV
Sbjct: 121 FIQSEATNYTILFTV 135
Score = 57.0 bits (137), Expect = 2e-10
Identities = 20/173 (11%), Positives = 43/173 (24%), Gaps = 26/173 (15%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+P V W+ ++ + + C NE G
Sbjct: 168 EPIVEWVLCDSQGESCKEESPAVVKKEEKV------LHELFGTDIRCCARNELGR----- 216
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFS-FRLAGSPKPKVTWMKGIKDI 121
+ T P + +GE + + + +TW K +
Sbjct: 217 -----ECTRLFTIDLNQTPQTTLPQL--FLKVGEPLWIRCKAVHVNHGFGLTWELENKAL 269
Query: 122 TTSSR------TMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ + T+ + + ++ G Y + A VT+
Sbjct: 270 EEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS-ALVTI 321
Score = 41.6 bits (97), Expect = 5e-05
Identities = 8/73 (10%), Positives = 19/73 (26%), Gaps = 9/73 (12%)
Query: 3 KPEVIWLRGNTPLPKSS----PRFKYIEDSNNLHT-----LILSGVTAEEAGKYTCRVSN 53
P W + + P + + + + L+ A + C N
Sbjct: 436 LPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYN 495
Query: 54 EYGYTETFARVDV 66
G + ++
Sbjct: 496 SLGTSCETILLNS 508
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 97.7 bits (243), Expect = 4e-26
Identities = 22/177 (12%), Positives = 63/177 (35%), Gaps = 16/177 (9%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNN-LHTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
+V ++ + P++K D N + + + + E+ G YT ++ + +
Sbjct: 32 NAKVNYIFNEKEI-FEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHST 90
Query: 62 ARVDVINVSSGAVKHE---------KPAMFLTRPDTMMSVALGEDISFSFRLAGSPKP-K 111
+ + E + F+ V ++ ++A K
Sbjct: 91 VVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS--WEVTGECNVLLKCKVANIKKETH 148
Query: 112 VTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ W K ++I+ + + + L + + + G Y ++ ++ G D++ + +
Sbjct: 149 IVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL 203
Score = 53.4 bits (128), Expect = 2e-09
Identities = 12/87 (13%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Query: 84 TRPDTMMSVALGEDISFSFRLA-GSPKPKVTWMKGIKDITTSSRTMTETVNDY--VRLTL 140
T+ + + + + F + S KV ++ K+I + + + + +
Sbjct: 6 TKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFM 65
Query: 141 KRATDDENGTYFIVARNIYGSDRAFVT 167
++ D++ GTY ++ ++ + V
Sbjct: 66 EKLQDEDEGTYTFQLQDGKATNHSTVV 92
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 96.8 bits (241), Expect = 5e-26
Identities = 31/167 (18%), Positives = 57/167 (34%), Gaps = 14/167 (8%)
Query: 4 PEVIWLRGN-TPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF- 61
++ W N L + R + + ++ TL + ++AG Y C V+ E G
Sbjct: 33 KDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEAT 92
Query: 62 ARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDI 121
V + +K MF P GED + S P + W +D+
Sbjct: 93 VNVKI---------FQKL-MFKNAPTPQE-FKEGEDAVIVCDVVSSLPPTIIWKHKGRDV 141
Query: 122 TTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+++ L ++ + GTY R + + F +
Sbjct: 142 ILKKDVRFIVLSNNY-LQIRGIKKTDEGTYRCEGRILARGEINFKDI 187
Score = 57.9 bits (140), Expect = 4e-11
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 5/66 (7%)
Query: 3 KPEVIWLRGNTPLP-KSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
P +IW + K RF + + + L + G+ + G Y C F
Sbjct: 129 PPTIIWKHKGRDVILKKDVRFIVLSN----NYLQIRGIKKTDEGTYRCEGRILARGEINF 184
Query: 62 ARVDVI 67
+ VI
Sbjct: 185 KDIQVI 190
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 96.9 bits (241), Expect = 8e-26
Identities = 30/163 (18%), Positives = 68/163 (41%), Gaps = 7/163 (4%)
Query: 6 VIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVD 65
WL P+ + + +++ +N L ++ V A + G Y+C VS+ F++
Sbjct: 42 YRWLLNEFPVFITMDKRRFVSQTN--GNLYIANVEASDKGNYSCFVSSPSITKSVFSKFI 99
Query: 66 VINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSS 125
+ PA + + + +G++++ G+P P + W K ++ + +++
Sbjct: 100 PLIPIPERTTKPYPADIVVQFKD-VYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTA 158
Query: 126 RTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ + V L + ++ G Y A NI G D+ +
Sbjct: 159 EI---STSGAV-LKIFNIQLEDEGIYECEAENIRGKDKHQARI 197
Score = 57.6 bits (139), Expect = 6e-11
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P++ W + P+P ++ I S L + + E+ G Y C N G + A
Sbjct: 142 VPDIRWRKVLEPMPSTA----EISTSG--AVLKIFNIQLEDEGIYECEAENIRGKDKHQA 195
Query: 63 RVDV 66
R+ V
Sbjct: 196 RIYV 199
Score = 34.1 bits (78), Expect = 0.009
Identities = 12/91 (13%), Positives = 20/91 (21%), Gaps = 6/91 (6%)
Query: 82 FLTRPDTMMSVALGEDISFSFRLAGSPKP--KVTWMK--GIKDITTSSRTMTETVNDYVR 137
F + V G+ + W+ IT R N
Sbjct: 10 FPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG--N 67
Query: 138 LTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
L + + G Y + + F
Sbjct: 68 LYIANVEASDKGNYSCFVSSPSITKSVFSKF 98
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 101 bits (252), Expect = 1e-25
Identities = 35/166 (21%), Positives = 52/166 (31%), Gaps = 21/166 (12%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P W + + TLI+ E++GKY C V+N G
Sbjct: 277 VPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVET 336
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
+ V P P +V G F+ + G+P V+WMK K I
Sbjct: 337 VLTV----------TAPLSAKIDP-PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG 385
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
S L ++ ++ G Y RN S A +
Sbjct: 386 HSESV----------LRIESVKKEDKGMYQCFVRNDRESAEASAEL 421
Score = 98.9 bits (246), Expect = 7e-25
Identities = 29/171 (16%), Positives = 51/171 (29%), Gaps = 7/171 (4%)
Query: 3 KPEVIWLRGNTPLPKSSPRF--KYIEDSNNLHTLILSGVTAEEA-GKYTCRVSNEYGYTE 59
V W + KY+ + L + V E+ Y CR +
Sbjct: 170 VEVVSWHTDEEENYFPGAEYDGKYLVLPSG--ELHIREVGPEDGYKSYQCRTKHRLTGET 227
Query: 60 TFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIK 119
+ V + + P + M + + ++ G P P W K I+
Sbjct: 228 RLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIE 287
Query: 120 DITTSSRTMTETVNDYV--RLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
T + V L +K A +++G Y V N G + +
Sbjct: 288 GTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVL 338
Score = 97.7 bits (243), Expect = 2e-24
Identities = 28/171 (16%), Positives = 57/171 (33%), Gaps = 25/171 (14%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
V W++ + S L + V E+ G Y C V N+ E A
Sbjct: 372 IKTVSWMKDGKAIGHSE------------SVLRIESVKKEDKGMYQCFVRNDRESAEASA 419
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
+ + + + P + + ++ G + G+P P+++W K I
Sbjct: 420 ELKLG------GRFDPP--VIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIA 471
Query: 123 TSSR-----TMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ R +T + L + ++ G Y +A++ G +
Sbjct: 472 NNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKL 522
Score = 93.1 bits (231), Expect = 8e-23
Identities = 36/170 (21%), Positives = 58/170 (34%), Gaps = 18/170 (10%)
Query: 5 EVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARV 64
+ W + L + V A AG +TC N G+ + +
Sbjct: 651 NIDWTLDGQAIS-EDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPL 709
Query: 65 DVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTS 124
+V P ++ P T + A G D + G PKP+VTW K + D
Sbjct: 710 NV----------YVPPRWILEP-TDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGE 758
Query: 125 SRTMTETVNDYV---RLTLKRATDDENGTYFIVARNIYGSDRA---FVTV 168
+ + ++ N V L + G Y A N GS + ++V
Sbjct: 759 YKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISV 808
Score = 91.5 bits (227), Expect = 3e-22
Identities = 30/174 (17%), Positives = 68/174 (39%), Gaps = 24/174 (13%)
Query: 3 KPEVIWLRGNTPLPKSSPRFK----YIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
PE+ W + ++ R++ + + + L ++ V A + G Y C ++ G
Sbjct: 458 TPEISWELDGKKIA-NNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVA 516
Query: 59 ETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGI 118
E A+++V + P ++ + + ++ GE + + +AG P + W +
Sbjct: 517 EHSAKLNV---------YGLP--YIRQMEK-KAIVAGETLIVTCPVAGYPIDSIVWERDN 564
Query: 119 KDITTSSRTMTETVNDYVRLTLKRATDDEN-GTYFIVARNIYG---SDRAFVTV 168
+ + + + L ++ + + TY VA+N G V V
Sbjct: 565 RALPINRKQKVFPNGT---LIIENVERNSDQATYTCVAKNQEGYSARGSLEVQV 615
Score = 71.1 bits (174), Expect = 4e-15
Identities = 22/170 (12%), Positives = 43/170 (25%), Gaps = 19/170 (11%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLH---TLILSGVTAEEAGKYTCRVSNEYGYTE 59
PE+IW+R + P + I L A Y C N++G
Sbjct: 68 MPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSII 127
Query: 60 TFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRL---AGSPKPKVTWMK 116
+ V+ + + V G + V+W
Sbjct: 128 S---------RDVHVRAVVAQYYEADVNK-EHVIRGNSAVIKCLIPSFVADFVEVVSWHT 177
Query: 117 GIKDITTSSRTMTE--TVNDYVRLTLKRAT-DDENGTYFIVARNIYGSDR 163
++ V L ++ +D +Y ++ +
Sbjct: 178 DEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGET 227
Score = 63.4 bits (154), Expect = 2e-12
Identities = 18/136 (13%), Positives = 40/136 (29%), Gaps = 15/136 (11%)
Query: 34 LILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVA 93
+ + + + G A +K +FL P + +
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANP--------PDADQKGPVFLKEPTNRIDFS 52
Query: 94 LGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRAT------DDE 147
+ +G+P P++ W++ + + +D +L +
Sbjct: 53 NSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG-KLVFPPFRAEDYRQEVH 111
Query: 148 NGTYFIVARNIYGSDR 163
Y +ARN +GS
Sbjct: 112 AQVYACLARNQFGSII 127
Score = 49.9 bits (119), Expect = 6e-08
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLH----TLILSGVTAEEAGKYTCRVSNEYGYT 58
KP+V W + P +K ++ S+N+ TL + + G Y C N G
Sbjct: 743 KPQVTWKKAVGDTP---GEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSG 799
Query: 59 ETFARVDVINVS 70
+ + +
Sbjct: 800 LSAVIMISVQAH 811
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 99.9 bits (249), Expect = 1e-25
Identities = 28/174 (16%), Positives = 59/174 (33%), Gaps = 20/174 (11%)
Query: 3 KPEVIWLRGNTPLP------KSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYG 56
PE+ W R R + + +L + V ++G+Y C ++ G
Sbjct: 29 IPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGS-SSLHIKDVKLSDSGRYDCEAASRIG 87
Query: 57 YTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMK 116
+ +D+ E F++ G I+ S + +P + W +
Sbjct: 88 GHQKSMYLDI----------EYAPKFISNQTI-YYSWEGNPINISCDVKSNPPASIHWRR 136
Query: 117 GIKDITTSSRTMTETVND--YVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ + T +T + + L + +D++ G Y A N G+ +
Sbjct: 137 DKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYIL 190
Score = 56.4 bits (136), Expect = 3e-10
Identities = 11/67 (16%), Positives = 23/67 (34%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+ W R LP + + L ++ + + G+Y C +N G
Sbjct: 129 PASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEY 188
Query: 63 RVDVINV 69
+ + +V
Sbjct: 189 ILALADV 195
Score = 52.5 bits (126), Expect = 7e-09
Identities = 14/98 (14%), Positives = 34/98 (34%), Gaps = 10/98 (10%)
Query: 78 KPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIK-------DITTSSRTMTE 130
+P + + + ++ G P P++TW + + D + R +
Sbjct: 1 QPH-IIQLKNE--TTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVK 57
Query: 131 TVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ L +K ++G Y A + G + + +
Sbjct: 58 GQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL 95
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 99.1 bits (247), Expect = 3e-25
Identities = 41/166 (24%), Positives = 65/166 (39%), Gaps = 18/166 (10%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P WLRG + S ++ + S L++S VT +++G YTC V+ + A
Sbjct: 250 PPSFTWLRGEEVIQLRSKKYSLLGGS----NLLISNVTDDDSGTYTCVVTYKNENISASA 305
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
+ V+ P FL P + DI F ++G P P V WMK +
Sbjct: 306 ELTVLV----------PPWFLNHPSN-LYAYESMDIEFECAVSGKPVPTVNWMKNGDVVI 354
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
S + V L + + G Y VA N G+ ++ +
Sbjct: 355 PSDY--FQIVGGS-NLRILGVVKSDEGFYQCVAENEAGNAQSSAQL 397
Score = 90.7 bits (225), Expect = 3e-22
Identities = 34/167 (20%), Positives = 62/167 (37%), Gaps = 10/167 (5%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF- 61
P + W + L + + + L +S + ++G Y C N
Sbjct: 150 MPTIHWQKNQQDLNPIPGDSRVVVLPSG--ALQISRLQPGDSGVYRCSARNPASTRTGNE 207
Query: 62 ARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDI 121
A V +++ + FL RP + G+D ++G P P TW++G + I
Sbjct: 208 AEVRILSDP----GLHRQLYFLQRPSN-VIAIEGKDAVLECCVSGYPPPSFTWLRGEEVI 262
Query: 122 TTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
S+ ++ L + TDD++GTY V + A +
Sbjct: 263 QLRSKKY--SLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAEL 307
Score = 79.1 bits (195), Expect = 4e-18
Identities = 33/172 (19%), Positives = 60/172 (34%), Gaps = 18/172 (10%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNL--HTLILSGVTAEEAGKYTCRVSNEYGYT--E 59
P + W + L K + +L ++ S + G Y C S +
Sbjct: 52 PVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIIS 111
Query: 60 TFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIK 119
A+V V P FL++ +++ + +G+ + + G P P + W K +
Sbjct: 112 RTAKVMV----------AGPLRFLSQTESI-TAFMGDTVLLKCEVIGDPMPTIHWQKNQQ 160
Query: 120 DITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG---SDRAFVTV 168
D+ V L + R ++G Y ARN + A V +
Sbjct: 161 DLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRI 212
Score = 56.4 bits (136), Expect = 3e-10
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P V W++ + S F+ + L + GV + G Y C NE G ++ A
Sbjct: 341 VPTVNWMKNGDVVI-PSDYFQIVGG----SNLRILGVVKSDEGFYQCVAENEAGNAQSSA 395
Query: 63 RVDVI 67
++ V
Sbjct: 396 QLIVP 400
Score = 40.6 bits (95), Expect = 8e-05
Identities = 16/128 (12%), Positives = 30/128 (23%), Gaps = 20/128 (15%)
Query: 50 RVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGS-P 108
R +E + F++ P G ++ +
Sbjct: 2 RWGSELESSHHHHHHGG---------RRSL-HFVSEPSDA-VTMRGGNVLLNCSAESDRG 50
Query: 109 KPKVTWMKGIKDITTSSRTMTETVND----YVRLTLKRATDDENGTYFIVARNIYG---- 160
P + W K + + + + + R + G Y A
Sbjct: 51 VPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSII 110
Query: 161 SDRAFVTV 168
S A V V
Sbjct: 111 SRTAKVMV 118
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 94.9 bits (236), Expect = 5e-25
Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 7/163 (4%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEE-AGKYTCRVSNEYGYTETF 61
P ++W + + + R+ +E + L + V A Y C N G +
Sbjct: 35 PPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVG--DAV 92
Query: 62 ARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDI 121
+ + + G + P T + +G + + + G+P P + W+K +
Sbjct: 93 SADATLTIYEGDKTPAGFPVITQGPGT-RVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKV 151
Query: 122 TTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRA 164
S+ ++ D L ++ + +++ G Y VA N G++ +
Sbjct: 152 DMSNPRY--SLKDGF-LQIENSREEDQGKYECVAENSMGTEHS 191
Score = 56.0 bits (135), Expect = 3e-10
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P + W++ T + S+PR+ ++D L + E+ GKY C N G + A
Sbjct: 139 TPNIYWIKNQTKVDMSNPRY-SLKD----GFLQIENSREEDQGKYECVAENSMGTEHSKA 193
Score = 53.3 bits (128), Expect = 2e-09
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 9/99 (9%)
Query: 77 EKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYV 136
P + +P V +G SF G P P + W K K ++ + T
Sbjct: 4 AHPPEIIRKPQNQ-GVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG 62
Query: 137 ----RLTLKRATDDENGTYFIVARNIYG---SDRAFVTV 168
R+ RA D+ Y VA N G S A +T+
Sbjct: 63 ISILRIEPVRAGRDD-APYECVAENGVGDAVSADATLTI 100
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 96.4 bits (240), Expect = 7e-25
Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 17/167 (10%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF- 61
PE+ W + P+ S+ + + + L + + GKY C +N G +
Sbjct: 137 DPEITWFKDFLPVDPSASNGRIKQLRS--GALQIESSEETDQGKYECVATNSAGVRYSSP 194
Query: 62 ARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDI 121
A + V V++ P F P + + G +++ + GSP P V WM+G +D+
Sbjct: 195 ANLYVR------VQNVAP-RFSILPMSH-EIMPGGNVNITCVAVGSPMPYVKWMQGAEDL 246
Query: 122 TTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
T R L+ ++ Y VA + G A +
Sbjct: 247 TPEDDMPVG------RNVLELTDVKDSANYTCVAMSSLGVIEAVAQI 287
Score = 95.3 bits (237), Expect = 2e-24
Identities = 32/170 (18%), Positives = 53/170 (31%), Gaps = 9/170 (5%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEE-AGKYTCRVSNEYGYTETF 61
KP V W + + S D + L + + Y C N G
Sbjct: 35 KPRVTWNKKGKKVN-SQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVH 93
Query: 62 ARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDI 121
A++ V P + V + +G+P P++TW K +
Sbjct: 94 AKL---TVLREDQLPSGFPNIDMGP-QLKVVERTRTATMLCAASGNPDPEITWFKDFLPV 149
Query: 122 TTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG---SDRAFVTV 168
S+ L ++ + + + G Y VA N G S A + V
Sbjct: 150 DPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYV 199
Score = 57.5 bits (139), Expect = 1e-10
Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 77 EKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYV 136
E+P F+ P + G SF + G PKP+VTW K K + + E
Sbjct: 4 EEPPRFIKEPKDQI-GVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 137 ---RLTLKRATDDENGTYFIVARNIYGSD--RAFVTV 168
R+ R DE Y VA+N G A +TV
Sbjct: 63 AVLRIQPLRTPRDE-NVYECVAQNSVGEITVHAKLTV 98
Score = 56.8 bits (137), Expect = 2e-10
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P V W++G L + +L +++ YTC + G E A
Sbjct: 234 MPYVKWMQGAEDLTPED-DMP-------VGRNVLELTDVKDSANYTCVAMSSLGVIEAVA 285
Query: 63 RVDVI 67
++ V
Sbjct: 286 QITVK 290
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 96.1 bits (239), Expect = 8e-25
Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 12/168 (7%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P +IW + ++I SNN L + G+ + G Y C F
Sbjct: 129 PPTIIWKHKGRDVI-LKKDVRFIVLSNN--YLQIRGIKKTDEGTYRCEGRILARGEINFK 185
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
+ VI V + P + + + LG+ ++ G P+P ++W K + I
Sbjct: 186 DIQVI-V------NVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIE 238
Query: 123 TSSRTMTE--TVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ +D LT++ ++ Y +A N G A + +
Sbjct: 239 NEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL 286
Score = 93.4 bits (232), Expect = 7e-24
Identities = 31/167 (18%), Positives = 57/167 (34%), Gaps = 14/167 (8%)
Query: 4 PEVIWLRGNT-PLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET-F 61
++ W N L + R + + ++ TL + ++AG Y C V+ E G
Sbjct: 33 KDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEAT 92
Query: 62 ARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDI 121
V + +K MF P GED + S P + W +D+
Sbjct: 93 VNVKI---------FQKL-MFKNAPTPQE-FKEGEDAVIVCDVVSSLPPTIIWKHKGRDV 141
Query: 122 TTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+++ L ++ + GTY R + + F +
Sbjct: 142 ILKKDVRFIVLSNNY-LQIRGIKKTDEGTYRCEGRILARGEINFKDI 187
Score = 56.8 bits (137), Expect = 2e-10
Identities = 11/65 (16%), Positives = 24/65 (36%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+P + W + P+ + S++ L + V + +Y C N+ G +
Sbjct: 225 EPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASI 284
Query: 63 RVDVI 67
+ V
Sbjct: 285 HLKVF 289
Score = 42.9 bits (101), Expect = 1e-05
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 90 MSVALGEDISFSFRLAGSPK-PKVTWMK--GIKDITTSSRTMTETVNDYV-RLTLKRATD 145
+++GE F ++AG K ++W G K R +D LT+ A
Sbjct: 12 GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANI 71
Query: 146 DENGTYFIVARNIYG---SDRAFVTV 168
D+ G Y V G V +
Sbjct: 72 DDAGIYKCVVTAEDGTQSEATVNVKI 97
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 97.8 bits (243), Expect = 1e-24
Identities = 29/170 (17%), Positives = 50/170 (29%), Gaps = 20/170 (11%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLH----TLILSGVTAEEAGKYTCRVSNEYGYT 58
+ W N L + + +N +S V + G YTC S +
Sbjct: 257 GFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS 316
Query: 59 ETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGI 118
A V + EK + T + E+ FS R P+ + TW
Sbjct: 317 ---ALVTI---------VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSR 364
Query: 119 KDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
K + +++ ++ + G Y A N T+
Sbjct: 365 KSFPCEQK----GLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTL 410
Score = 80.1 bits (197), Expect = 2e-18
Identities = 23/162 (14%), Positives = 46/162 (28%), Gaps = 19/162 (11%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+W+ ++ L P F + + ++++ +T +AG+Y + +E
Sbjct: 77 NISCLWVFKHSSLN-CQPHFDL--QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILF 133
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
V + L RP + + P+P V W+
Sbjct: 134 TVSI---------RNTLLYTLRRPYF---RKMENQDALVCISESVPEPIVEWVLCDSQGE 181
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRA 164
+ V K + ARN G +
Sbjct: 182 SCKEESPAVVKKEE----KVLHELFGTDIRCCARNELGRECT 219
Score = 66.6 bits (162), Expect = 1e-13
Identities = 22/173 (12%), Positives = 46/173 (26%), Gaps = 26/173 (15%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+P V W+ ++ + + C NE G T
Sbjct: 168 EPIVEWVLCDSQGESCKEESPAVVKKEEKV------LHELFGTDIRCCARNELGRECTRL 221
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFR-LAGSPKPKVTWMKGIKDI 121
+N T P + + +GE + + + + +TW K +
Sbjct: 222 FTIDLN----------QTPQTTLPQ--LFLKVGEPLWIRCKAVHVNHGFGLTWELENKAL 269
Query: 122 TTSSRTMTETVND------YVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ T + + + ++ G Y + A VT+
Sbjct: 270 EEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS-ALVTI 321
Score = 63.5 bits (154), Expect = 1e-12
Identities = 13/135 (9%), Positives = 38/135 (28%), Gaps = 6/135 (4%)
Query: 39 VTAEEAGKYTC----RVSNEYGYTETFARVDVINVSSGAVKHEKP-AMFLTRPDTMMSVA 93
++ C +N+ ++ + V +P + + V
Sbjct: 2 TGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVD 61
Query: 94 LGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFI 153
+ I+ + W+ + + V + + + T+ + G Y +
Sbjct: 62 VSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQN-RGVVSMVILKMTETQAGEYLL 120
Query: 154 VARNIYGSDRAFVTV 168
++ + TV
Sbjct: 121 FIQSEATNYTILFTV 135
Score = 53.9 bits (129), Expect = 3e-09
Identities = 7/66 (10%), Positives = 20/66 (30%), Gaps = 6/66 (9%)
Query: 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET 60
Y + W P K +++ +++ + G+Y N+
Sbjct: 353 YPQIRCTWTFSRKSFPCEQ---KGLDNG---YSISKFCNHKHQPGEYIFHAENDDAQFTK 406
Query: 61 FARVDV 66
+++
Sbjct: 407 MFTLNI 412
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 97.3 bits (242), Expect = 1e-24
Identities = 34/166 (20%), Positives = 52/166 (31%), Gaps = 21/166 (12%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P W + + TLI+ E++GKY C V+N G
Sbjct: 241 APSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVET 300
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
+ V + P +V G F+ + G+P V+WMK K I
Sbjct: 301 VLTV---------TAPLS-AKIDP-PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG 349
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
S L ++ ++ G Y RN S A +
Sbjct: 350 HSESV----------LRIESVKKEDKGMYQCFVRNDRESAEASAEL 385
Score = 79.2 bits (195), Expect = 3e-18
Identities = 30/171 (17%), Positives = 50/171 (29%), Gaps = 8/171 (4%)
Query: 3 KPEVIWLRGNTPL--PKSSPRFKYIEDSNNLHTLILSGVTAEEA-GKYTCRVSNEYGYTE 59
V W P + KY+ + L + V E+ Y CR +
Sbjct: 135 VEVVSWHTDEEENYFPGAEYDGKYLVLPSG--ELHIREVGPEDGYKSYQCRTKHRLTGET 192
Query: 60 TFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIK 119
+ V + + P + + + IS G P P W K I+
Sbjct: 193 RLSATKGRLVITEPISSSAPRTPALVQKPL-ELMVAHTISLLCPAQGFPAPSFRWYKFIE 251
Query: 120 DITTSSRTM--TETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
T + L +K A +++G Y V N G + +
Sbjct: 252 GTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVL 302
Score = 61.1 bits (148), Expect = 1e-11
Identities = 23/171 (13%), Positives = 43/171 (25%), Gaps = 21/171 (12%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLH---TLILSGVTAEEAGKYTCRVSNEYGYTE 59
PE+IW+R + P + I L A Y C N++G
Sbjct: 33 MPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFG--- 89
Query: 60 TFARVDVINVSSGA-VKHEKPAMFLTRPDTMMSVALGEDISFS---FRLAGSPKPKVTWM 115
+S V+ + + V G V+W
Sbjct: 90 -------SIISRDVHVRAVVAQYYEADVNK-EHVIRGNSAVIKCLIPSFVADFVEVVSWH 141
Query: 116 KGIKDITTSSRTMTE--TVNDYVRLTLKRAT-DDENGTYFIVARNIYGSDR 163
++ V L ++ +D +Y ++ +
Sbjct: 142 TDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGET 192
Score = 52.2 bits (125), Expect = 1e-08
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 12/64 (18%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
V W++ + S L + V E+ G Y C V N+ E A
Sbjct: 336 IKTVSWMKDGKAIGHSE------------SVLRIESVKKEDKGMYQCFVRNDRESAEASA 383
Query: 63 RVDV 66
+ +
Sbjct: 384 ELKL 387
Score = 42.2 bits (99), Expect = 3e-05
Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 10/101 (9%)
Query: 77 EKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMK-GIKDITTSSRTMTETVN-- 133
+K +FL P + + + +G+P P++ W++ + + +
Sbjct: 1 QKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK 60
Query: 134 ---DYVRLTLKRATDDENGTYFIVARNIYG---SDRAFVTV 168
R R Y +ARN +G S V
Sbjct: 61 LVFPPFRAEDYRQEVHA-QVYACLARNQFGSIISRDVHVRA 100
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 97.2 bits (242), Expect = 1e-24
Identities = 40/168 (23%), Positives = 63/168 (37%), Gaps = 19/168 (11%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P++ W + LP +F N L ++ V+ E++G+Y C SN+ G
Sbjct: 251 TPDIAWYKKGGDLPSDKAKF-----ENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTI 305
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
V V P +L P + +A GED R G+PKP V WM + +
Sbjct: 306 SVRV---------KAAPY-WLDEPKN-LILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQ 354
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSD--RAFVTV 168
++ V + + Y N +G AFV+V
Sbjct: 355 SAPPNPNREVAGDT-IIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401
Score = 87.2 bits (216), Expect = 6e-21
Identities = 33/171 (19%), Positives = 60/171 (35%), Gaps = 10/171 (5%)
Query: 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEA-GKYTCRVSNEYGYTE 59
P + W+ + R + L S V ++ Y+C + +T
Sbjct: 144 LPSPVIFWMSSSMEPITQDKRVSQGHN----GDLYFSNVMLQDMQTDYSCNARFHFTHTI 199
Query: 60 TFARVDVINVSSGAVKHEKPAMFLTRPDTM--MSVALGEDISFSFRLAGSPKPKVTWMKG 117
+ V + E+ F+ T V G D+ +G P P + W K
Sbjct: 200 QQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKK 259
Query: 118 IKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
D+ + N L + +++++G YF +A N GS R ++V
Sbjct: 260 GGDLPSDKAKFE---NFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISV 307
Score = 72.2 bits (177), Expect = 1e-15
Identities = 34/167 (20%), Positives = 52/167 (31%), Gaps = 21/167 (12%)
Query: 3 KPEVIWLRGNTPLPKSS-PRFKYIEDSNNLHTLILSGVTAEE-AGKYTCRVSNEYGYTET 60
P W R + + PR S L SG EE G+Y C N++G +
Sbjct: 46 APSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALS 105
Query: 61 -FARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRL-AGSPKPKVTWMK-G 117
R+ V K ++ + V G ++ G P P + WM
Sbjct: 106 NRIRLQV----------SKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSS 155
Query: 118 IKDITTSSR-TMTETVNDYVRLTLKRAT-DDENGTYFIVARNIYGSD 162
++ IT R + + L D Y AR +
Sbjct: 156 MEPITQDKRVSQGHNGD----LYFSNVMLQDMQTDYSCNARFHFTHT 198
Score = 60.7 bits (147), Expect = 1e-11
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
KP V W+ PL S+P E + + T+I Y C SNE+GY A
Sbjct: 341 KPTVQWMVNGEPLQ-SAPPNPNREVAGD--TIIFRDTQISSRAVYQCNTSNEHGYLLANA 397
Query: 63 RVDVINV 69
V V++V
Sbjct: 398 FVSVLDV 404
Score = 44.9 bits (106), Expect = 3e-06
Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 7/97 (7%)
Query: 79 PAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVND---- 134
P + V ++I G+P P W + + +
Sbjct: 16 PPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTL 75
Query: 135 YVRLTLKRATDDENGTYFIVARNIYG---SDRAFVTV 168
+ ++ G Y ARN +G S+R + V
Sbjct: 76 VIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQV 112
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 93.3 bits (232), Expect = 1e-24
Identities = 36/163 (22%), Positives = 59/163 (36%), Gaps = 18/163 (11%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT-ETF 61
+PE+ W R + R+ E+ L + V + G Y C +N G E+
Sbjct: 36 QPEISWTRNKILIKLFDTRYSIRENGQ---LLTILSVEDSDDGIYCCTANNGVGGAVESC 92
Query: 62 ARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDI 121
+ V KP P + + G G+PKP V+W+KG +
Sbjct: 93 GALQV---------KMKP-KITRPPINV-KIIEGLKAVLPCTTMGNPKPSVSWIKGDSAL 141
Query: 122 TTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRA 164
+SR L + ++ G Y VA+N G+ +
Sbjct: 142 RENSRIAVLESGS---LRIHNVQKEDAGQYRCVAKNSLGTAYS 181
Score = 55.1 bits (133), Expect = 4e-10
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 5/99 (5%)
Query: 73 AVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETV 132
A K K + T +T+ + E +F + P+P+++W + I +
Sbjct: 1 AEKLPKAPVITTPLETVD-ALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRE 59
Query: 133 NDYVRLTLKRATDDENGTYFIVARNIYG---SDRAFVTV 168
N + LT+ D ++G Y A N G + V
Sbjct: 60 NGQL-LTILSVEDSDDGIYCCTANNGVGGAVESCGALQV 97
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 92.5 bits (230), Expect = 3e-24
Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 14/167 (8%)
Query: 3 KPEVIWLRGNTPL-PKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
P V WL N + S RF + + + L + + + G Y C E F
Sbjct: 31 APAVSWLYHNEEVTTISDNRFAMLAN----NNLQILNINKSDEGIYRCEGRVEARGEIDF 86
Query: 62 ARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDI 121
+ V + + PA+ + + + GE+++FS R +GSP+P ++W + K I
Sbjct: 87 RDIIV-------IVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLI 139
Query: 122 TTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ + + LT++ + + G Y A N G D +
Sbjct: 140 EENEKYI--LKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 184
Score = 60.6 bits (147), Expect = 4e-12
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+P + W R + + ++ + L + + + G Y CR +N+ G E A
Sbjct: 127 EPAISWFRNGKLIE-ENEKYILKGSN---TELTVRNIINSDGGPYVCRATNKAGEDEKQA 182
Query: 63 RVDVI 67
+ V
Sbjct: 183 FLQVF 187
Score = 47.5 bits (113), Expect = 2e-07
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 2/87 (2%)
Query: 82 FLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLK 141
F + GED R++ SP P V+W+ +++TT S + + L +
Sbjct: 5 FREVV-SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN-LQIL 62
Query: 142 RATDDENGTYFIVARNIYGSDRAFVTV 168
+ G Y R + F +
Sbjct: 63 NINKSDEGIYRCEGRVEARGEIDFRDI 89
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 92.2 bits (229), Expect = 3e-24
Identities = 29/171 (16%), Positives = 56/171 (32%), Gaps = 25/171 (14%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF- 61
+P++ W++ + + + + + + L L V +AG+Y C+V + +
Sbjct: 31 EPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQP 90
Query: 62 ARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKP-KVTWMKGIKD 120
+ V E F P ++V S G P+P + W +G
Sbjct: 91 VWLTV----------EGVPFFTVEPKD-LAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTK 139
Query: 121 ITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG---SDRAFVTV 168
I L ++ + A N+ G S A V +
Sbjct: 140 IGGP---------APSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 181
Score = 52.5 bits (126), Expect = 3e-09
Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
Query: 79 PAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVR- 137
+ P + V+ G+ + + + G +P + W+K + + +
Sbjct: 2 GLKLMGAPVKLT-VSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60
Query: 138 -LTLKRATDDENGTYFIVARNIYG---SDRAFVTV 168
L+LK + G Y+ + S ++TV
Sbjct: 61 FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTV 95
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 95.1 bits (236), Expect = 4e-24
Identities = 22/171 (12%), Positives = 43/171 (25%), Gaps = 17/171 (9%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+ + W + ++ + + L L E++G Y C N +
Sbjct: 54 RINLTWHKNDSARTVPGEEETRMWAQD--GALWLLPALQEDSGTYVCTTRNASYCDKMSI 111
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDIS-----FSFRLAGSPKPKVTWMKG 117
+ V E FL + L S K+ W K
Sbjct: 112 ELRV---------FENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKD 162
Query: 118 IKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ + L + ++ G Y V + + +T
Sbjct: 163 SLLLDKDNEKFLSVRGTT-HLLVHDVALEDAGYYRCVLTFAHEGQQYNITR 212
Score = 92.1 bits (228), Expect = 6e-23
Identities = 29/183 (15%), Positives = 61/183 (33%), Gaps = 22/183 (12%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
++ W + + L K + +F + + L++ V E+AG Y C ++ + +
Sbjct: 154 DVKIQWYKDSLLLDKDNEKFLSVRGTT---HLLVHDVALEDAGYYRCVLTFAHEGQQYNI 210
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFS---FRLAGSPKPKVTWMKG-- 117
+ + K E + ++ T +S +LG ++ F G+P + W
Sbjct: 211 TRSI-ELRIKKKKEETIPVIISPLKT-ISASLGSRLTIPCKVFLGTGTPLTTMLWWTAND 268
Query: 118 -----------IKDITTSSRTMTETVNDYVRLTLKRAT-DDENGTYFIVARNIYGSDRAF 165
+ + + V L T +D + + V N
Sbjct: 269 THIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLR 328
Query: 166 VTV 168
TV
Sbjct: 329 TTV 331
Score = 50.5 bits (120), Expect = 4e-08
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 7/84 (8%)
Query: 92 VALGEDISFS-------FRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRAT 144
GE ++ + SP+ +TW K T T L L A
Sbjct: 30 RLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPAL 89
Query: 145 DDENGTYFIVARNIYGSDRAFVTV 168
+++GTY RN D+ + +
Sbjct: 90 QEDSGTYVCTTRNASYCDKMSIEL 113
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 94.1 bits (234), Expect = 5e-24
Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 18/170 (10%)
Query: 3 KPEVIWLRGNTPLP-KSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEY-GYTET 60
P V WL N + S RF + + + L + + + G Y C E G +
Sbjct: 127 APAVSWLYHNEEVTTISDNRFAMLAN----NNLQILNINKSDEGIYRCEGRVEARGEIDF 182
Query: 61 FARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKD 120
+ ++NV PA+ + + + GE+++FS R +GSP+P ++W + K
Sbjct: 183 RDIIVIVNV--------PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKL 234
Query: 121 ITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDR--AFVTV 168
I + + + + N LT++ + + G Y A N G D AF+ V
Sbjct: 235 IEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Score = 89.9 bits (223), Expect = 2e-22
Identities = 30/166 (18%), Positives = 59/166 (35%), Gaps = 14/166 (8%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF-A 62
+ W S+ R ++ L + E+AG Y C+ ++ G T+
Sbjct: 33 ESIDWYNPQGEKIISTQRVV-VQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATV 91
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
+++ ++K F + GED R++ SP P V+W+ +++T
Sbjct: 92 VLEI---------YQKL-TFREVV-SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVT 140
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
T S + + L + + G Y R + F +
Sbjct: 141 TISDNRFAMLANNN-LQILNINKSDEGIYRCEGRVEARGEIDFRDI 185
Score = 57.9 bits (140), Expect = 9e-11
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+P + W R + + ++ + L + + + G Y CR +N+ G E A
Sbjct: 223 EPAISWFRNGKLIE-ENEKYILKGSN---TELTVRNIINSDGGPYVCRATNKAGEDEKQA 278
Query: 63 RVDVI 67
+ V
Sbjct: 279 FLQVF 283
Score = 53.7 bits (129), Expect = 3e-09
Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 82 FLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLK 141
+ +++GE F+ G P+ + + I ++ R + + RLT+
Sbjct: 7 VTISLSKVE-LSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIY 65
Query: 142 RATDDENGTYFIVARNIYGSDR---AFVTV 168
A ++ G Y A + G + + +
Sbjct: 66 NANIEDAGIYRCQATDAKGQTQEATVVLEI 95
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 94.9 bits (236), Expect = 7e-24
Identities = 29/166 (17%), Positives = 53/166 (31%), Gaps = 7/166 (4%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+ W+ P + + RF E N L ++ V + G YTC V+N +
Sbjct: 132 ELSYAWIFNEYPSYQDNRRFVSQETGN----LYIAKVEKSDVGNYTCVVTNTVTNHKVLG 187
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
+ + + V E + + G + G+P P + W +
Sbjct: 188 PPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPI 247
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
L + ++ G+Y VA N G + A +
Sbjct: 248 ARKAR---RHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQL 290
Score = 94.1 bits (234), Expect = 2e-23
Identities = 33/168 (19%), Positives = 59/168 (35%), Gaps = 22/168 (13%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P ++W R + R + L + E+AG Y C N G
Sbjct: 234 VPTILWRRADGKPIARKARR-----HKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKG 288
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
++ + +P ++ + + VA+ E + + + G PKP W+K +
Sbjct: 289 QLTF---------YAQPN-WVQIIND-IHVAMEESVFWECKANGRPKPTYRWLKNGDPLL 337
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSD--RAFVTV 168
T R + L + + G Y VA N +G A ++V
Sbjct: 338 TRDR--IQIEQG--TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
Score = 73.7 bits (181), Expect = 3e-16
Identities = 30/163 (18%), Positives = 56/163 (34%), Gaps = 17/163 (10%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET-F 61
KP + W T + F+Y +L LI + ++AG Y C +N +G +
Sbjct: 37 KPHIRWKLNGTDVD-IGMDFRYSVVDGSL--LINNPNKTQDAGTYQCIATNSFGTIVSRE 93
Query: 62 ARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRL-AGSPKPKVTWMKGIKD 120
A++ + + F TR + +SV G+ + S + W+
Sbjct: 94 AKLQFAYLEN----------FKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYP 143
Query: 121 ITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDR 163
+R L + + + G Y V N + +
Sbjct: 144 SYQDNRRFVSQETG--NLYIAKVEKSDVGNYTCVVTNTVTNHK 184
Score = 57.5 bits (139), Expect = 2e-10
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
KP WL+ PL + R + IE TL ++ V +AG Y C N++G + A
Sbjct: 324 KPTYRWLKNGDPLL-TRDRIQ-IEQG----TLNITIVNLSDAGMYQCVAENKHGVIFSSA 377
Query: 63 RVDVI 67
+ VI
Sbjct: 378 ELSVI 382
Score = 41.0 bits (96), Expect = 7e-05
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 95 GEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIV 154
+ + S + G+PKP + W D+ V+ + + T D GTY +
Sbjct: 23 EKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDA-GTYQCI 81
Query: 155 ARNIYG---SDRAFVTV 168
A N +G S A +
Sbjct: 82 ATNSFGTIVSREAKLQF 98
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 91.9 bits (228), Expect = 7e-24
Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 27/168 (16%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET-F 61
+ W + N +P + N LI + V ++AG Y CRV+N + + + +
Sbjct: 47 FVQYQWFKMNKEIP-----------NGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQW 95
Query: 62 ARVDV-----INVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMK 116
+++DV S E P T + G + GSP P W K
Sbjct: 96 SQLDVCDIPESFQRSVDGVSESKLQICVEP-TSQKLMPGSTLVLQCVAVGSPIPHYQWFK 154
Query: 117 GIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRA 164
+T ++ + + GTY+ N S +
Sbjct: 155 NELPLTHETKK---------LYMVPYVDLEHQGTYWCHVYNDRDSQDS 193
Score = 53.7 bits (129), Expect = 1e-09
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 11/67 (16%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P W + PL + ++ V E G Y C V N+ ++
Sbjct: 147 IPHYQWFKNELPLTHETK-----------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKK 195
Query: 63 RVDVINV 69
+I+
Sbjct: 196 VEIIIDE 202
Score = 48.3 bits (115), Expect = 1e-07
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 13/94 (13%)
Query: 78 KPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVR 137
+ + P++ +V G+ + R G P + W K K+I + +
Sbjct: 17 RGSKITVNPESK-AVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTS---------E 66
Query: 138 LTLKRATDDENGTYFIVARNIYG---SDRAFVTV 168
L + G Y N + S + + V
Sbjct: 67 LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDV 100
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 93.6 bits (232), Expect = 1e-23
Identities = 32/179 (17%), Positives = 57/179 (31%), Gaps = 19/179 (10%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P++ W + PL + F ++D LI+ V + G YTC S Y +
Sbjct: 138 LPKLQWYKDCKPLLLDNIHFSGVKD-----RLIVMNVAEKHRGNYTCHASYTYLGKQYPI 192
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
+ ++ K +P ++ + M V LG I + G W I
Sbjct: 193 TRVIEFITLEENKPTRPV-IVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVID 251
Query: 123 TSSRTMTE------------TVNDYVRLTLKRAT-DDENGTYFIVARNIYGSDRAFVTV 168
+ E L + + A+N +G D A++ +
Sbjct: 252 EDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 310
Score = 82.8 bits (204), Expect = 1e-19
Identities = 27/171 (15%), Positives = 53/171 (30%), Gaps = 18/171 (10%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
K + W + ++ P S+ + I L E++G Y C V N
Sbjct: 35 KGTITWYKDDSKTPVSTEQASRIHQHK--EKLWFVPAKVEDSGHYYCVVRNSSYCLRIKI 92
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFS------FRLAGSPKPKVTWMK 116
+ ++E + + + + D F+ + PK+ W K
Sbjct: 93 SAKFV-------ENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYK 145
Query: 117 GIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVT 167
K + + + + RL + + G Y A Y + +T
Sbjct: 146 DCKPLLLDNIHFSGVKD---RLIVMNVAEKHRGNYTCHASYTYLGKQYPIT 193
Score = 40.1 bits (93), Expect = 1e-04
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 105 AGSPKPKVTWMK-GIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDR 163
K +TW K K ++ + + L A +++G Y+ V RN R
Sbjct: 31 PNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK-LWFVPAKVEDSGHYYCVVRNSSYCLR 89
Query: 164 AFVTV 168
++
Sbjct: 90 IKISA 94
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 95.2 bits (236), Expect = 2e-23
Identities = 29/186 (15%), Positives = 60/186 (32%), Gaps = 27/186 (14%)
Query: 1 YVKPEVIWLR-GNTPLPKSSPRF-----------------KYIEDSNNLHTLILSGVTAE 42
+ W + G PLP + +N++ + L + +
Sbjct: 576 STFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQ 635
Query: 43 EAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSF 102
+ G Y C + + V + + ++GE I S
Sbjct: 636 DQGDYVCLAQDRKTKKRHCVVRQLT------VLERVAPTITGNLEN-QTTSIGESIEVSC 688
Query: 103 RLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSD 162
+G+P P++ W K + + S + + N LT++R ++ G Y A ++ G
Sbjct: 689 TASGNPPPQIMWFKDNETLVEDSGIVLKDGN--RNLTIRRVRKEDEGLYTCQACSVLGCA 746
Query: 163 RAFVTV 168
+
Sbjct: 747 KVEAFF 752
Score = 94.4 bits (234), Expect = 3e-23
Identities = 35/174 (20%), Positives = 65/174 (37%), Gaps = 21/174 (12%)
Query: 2 VKPEVIWLRGNTPLPKSSPRFKYI------EDSNNLHTLILSGVTAEEAGKYTCRVSNEY 55
V + W ++ + + E L TL + GVT + G YTC S+
Sbjct: 254 VGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 313
Query: 56 GYTETFARVDVINVSSGAVKHEKP-AMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTW 114
+ V V HEKP F + ++++ +GE + + G P P++ W
Sbjct: 314 MTKKNSTFVRV---------HEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKW 364
Query: 115 MKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
K + ++ V LT+ ++ + G Y ++ N ++ V
Sbjct: 365 YKNGIPLESNHTIKAGHV-----LTIMEVSERDTGNYTVILTNPISKEKQSHVV 413
Score = 80.2 bits (197), Expect = 3e-18
Identities = 32/185 (17%), Positives = 53/185 (28%), Gaps = 33/185 (17%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
V +G + + +F IE N L A + Y C N+ G E
Sbjct: 486 RSVEDFQGGNKIEVNKNQFALIEGKN-KTVSTLVIQAANVSALYKCEAVNKVGRGERVIS 544
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMK------- 116
V + +PD E +S S +TW K
Sbjct: 545 FHV----------TRGPEITLQPDM--QPTEQESVSLWCTADRSTFENLTWYKLGPQPLP 592
Query: 117 -------------GIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDR 163
++ + + ND + + LK A+ + G Y +A++ R
Sbjct: 593 IHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKR 652
Query: 164 AFVTV 168
V
Sbjct: 653 HCVVR 657
Score = 79.8 bits (196), Expect = 4e-18
Identities = 27/200 (13%), Positives = 52/200 (26%), Gaps = 47/200 (23%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
PE+ W + PL H L + V+ + G YT ++N +
Sbjct: 359 PPEIKWYKNGIPLE---SNHTIKAG----HVLTIMEVSERDTGNYTVILTNPISKEKQSH 411
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKP-KVTWMKGIKDI 121
V ++ V EK + S G + + + P P + W +++
Sbjct: 412 VVSLV-VYVPPQIGEKSL-----ISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEE 465
Query: 122 TTSS---------------------------------RTMTETVNDYVRLTLKRATDDEN 148
+ + + TL + +
Sbjct: 466 CANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVS 525
Query: 149 GTYFIVARNIYGSDRAFVTV 168
Y A N G ++
Sbjct: 526 ALYKCEAVNKVGRGERVISF 545
Score = 77.1 bits (189), Expect = 3e-17
Identities = 19/166 (11%), Positives = 43/166 (25%), Gaps = 8/166 (4%)
Query: 4 PEVIWLRGNTPLP-KSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
++ WL N + D TL + V + G Y C + +
Sbjct: 57 RDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYV 116
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
V A ++ ++ + + + S V+ +
Sbjct: 117 YVQDYRSPFIASVSDQH------GVVYITENKNKTVVIPCLGSISN-LNVSLCARYPEKR 169
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ + T+ G F A+ S ++ + +
Sbjct: 170 FVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYI 215
Score = 75.9 bits (186), Expect = 7e-17
Identities = 17/175 (9%), Positives = 45/175 (25%), Gaps = 21/175 (12%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
+ R + ++ + AG C ++
Sbjct: 159 VSLCARYPEKRFVPDGNRISW----DSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMY 214
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITT 123
+ V+ V + + L+ + +++GE + + + +
Sbjct: 215 IVVV------VGYRIYDVVLSPSHG-IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKH 267
Query: 124 SSRTM----------TETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ + +E LT+ T + G Y A + + + V
Sbjct: 268 QHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFV 322
Score = 62.5 bits (151), Expect = 3e-12
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P+++W + N L + S ++D N L + V E+ G YTC+ + G + A
Sbjct: 695 PPQIMWFKDNETLVEDSGIV--LKDGN--RNLTIRRVRKEDEGLYTCQACSVLGCAKVEA 750
Query: 63 RVDVI 67
+
Sbjct: 751 FFIIE 755
Score = 60.9 bits (147), Expect = 1e-11
Identities = 15/126 (11%), Positives = 32/126 (25%), Gaps = 17/126 (13%)
Query: 44 AGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFR 103
+ C + +D+ P L+ ++++ + + R
Sbjct: 9 VALWLCVETRAASVGLPSVSLDL------------P--RLSIQKDILTIKANTTLQITCR 54
Query: 104 LAGSPKPKVTWMKGIKDITTSSR-TMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSD 162
G W T LT+ + ++ G Y R +
Sbjct: 55 --GQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLAS 112
Query: 163 RAFVTV 168
+V V
Sbjct: 113 VIYVYV 118
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 89.8 bits (223), Expect = 2e-23
Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 15/167 (8%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF- 61
+ + + S+ R ++ L + E+AG Y C+ ++ G T+
Sbjct: 31 ESIDWYNPQGEKII-STQRVV-VQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEAT 88
Query: 62 ARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDI 121
+++ ++K F GED R++ SP P V+W+ +++
Sbjct: 89 VVLEI---------YQKL-TFREVVSP-QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEV 137
Query: 122 TTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
TT S + + L + + G Y R + F +
Sbjct: 138 TTISDNRFAMLANNN-LQILNINKSDEGIYRCEGRVEARGEIDFRDI 183
Score = 58.3 bits (141), Expect = 2e-11
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 3 KPEVIWLRGNTPLP-KSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
P V WL N + S RF + + + L + + + G Y C E F
Sbjct: 125 APAVSWLYHNEEVTTISDNRFAMLAN----NNLQILNINKSDEGIYRCEGRVEARGEIDF 180
Query: 62 ARVDVI-NV 69
+ VI NV
Sbjct: 181 RDIIVIVNV 189
Score = 54.4 bits (131), Expect = 6e-10
Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 82 FLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLK 141
+ +++GE F+ G P+ + + I ++ R + + RLT+
Sbjct: 5 VTISLSKV-ELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIY 63
Query: 142 RATDDENGTYFIVARNIYGSDR---AFVTV 168
A ++ G Y A + G + + +
Sbjct: 64 NANIEDAGIYRCQATDAKGQTQEATVVLEI 93
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 94.3 bits (234), Expect = 3e-23
Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 19/175 (10%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLH---TLILSGVTAEEAGKYTCRVSNEYGYTET 60
W R N+ + N TL +S ++G + C +N +G
Sbjct: 242 VYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANV 301
Query: 61 FARVDVINVSSGAVKHEKPAMFLT-RPDTMMSVALGEDISFSFRLAGSPKPK-VTWMKGI 118
++V +K + + +T + V GE++ PKP+ W+
Sbjct: 302 TTTLEV---------VDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMN 352
Query: 119 KDITTSSRTMTETVNDYVR-----LTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ T ++ N+ L L R E GTY + N + V
Sbjct: 353 RTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNV 407
Score = 88.6 bits (219), Expect = 3e-21
Identities = 35/182 (19%), Positives = 53/182 (29%), Gaps = 33/182 (18%)
Query: 3 KPEVI-WLRGNTPLPKSSPRFKYIEDSNNL---HTLILSGVTAEEAGKYTCRVSNEYGYT 58
KPE W+ N + E+ +N+ L L+ + E G YT VSN
Sbjct: 342 KPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNA 401
Query: 59 ETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKG- 117
V V LT + AG P+P + W
Sbjct: 402 AIAFNVYV----------NTKPEILTYDR-------LVNGMLQCVAAGFPEPTIDWYFCP 444
Query: 118 -----------IKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFV 166
D+ T + + V+ ++ + NGT A N G A+
Sbjct: 445 GTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYF 504
Query: 167 TV 168
Sbjct: 505 NF 506
Score = 53.1 bits (127), Expect = 5e-09
Identities = 20/171 (11%), Positives = 38/171 (22%), Gaps = 30/171 (17%)
Query: 2 VKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
V W + + + I A GKYTC + +
Sbjct: 60 DPGFVKWTFEILDETNENKQ----------NEWITEKAEATNTGKYTCTNKHGLSNS--- 106
Query: 62 ARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDI 121
V V PA + + D P+ +KG
Sbjct: 107 IYVFV----------RDPAKLFLVDRS-LYGKEDNDTLVRCP-LTDPEVTNYSLKG-CQG 153
Query: 122 TTSSRTMTETVNDYVRLTLKRATDDEN-GTYFIVARN---IYGSDRAFVTV 168
+ + + + +K + S++ + V
Sbjct: 154 KPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKV 204
Score = 44.3 bits (104), Expect = 5e-06
Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 28/132 (21%)
Query: 41 AEEAGKYTC----RVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGE 96
A A + C + + G ++ P++ + D + V +G+
Sbjct: 4 ARGAWDFLCVLLLLLRVQTGSSQPSVSPGE---------PSPPSIHPGKSD--LIVRVGD 52
Query: 97 DISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVAR 156
+I G V W I D T ++ ++A G Y +
Sbjct: 53 EIRLLCTDPGF----VKWTFEILDETNENKQNE--------WITEKAEATNTGKYTCTNK 100
Query: 157 NIYGSDRAFVTV 168
+ + +V V
Sbjct: 101 HGLSN-SIYVFV 111
Score = 43.1 bits (101), Expect = 1e-05
Identities = 8/74 (10%), Positives = 18/74 (24%), Gaps = 10/74 (13%)
Query: 3 KPEVIWLRGN----------TPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVS 52
+P + W P+ + + + + G C+
Sbjct: 435 EPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAY 494
Query: 53 NEYGYTETFARVDV 66
N+ G T +
Sbjct: 495 NDVGKTSAYFNFAF 508
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 90.6 bits (224), Expect = 2e-22
Identities = 26/173 (15%), Positives = 50/173 (28%), Gaps = 25/173 (14%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+ W+ + + + + + + TC N+ G E
Sbjct: 187 LEQAGWILTELEQSATVMKSGGLPSLG---LTLANVTSDLNRKNVTCWAENDVGRAEVSV 243
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
+V+V + + F + G P P + W+ +
Sbjct: 244 QVNVS---------------FPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLN 288
Query: 123 TSSRTMTETVNDYVR-------LTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+S TE + L L + T NG Y ++A N +G A +
Sbjct: 289 ETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA 341
Score = 52.0 bits (124), Expect = 1e-08
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 5/70 (7%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLH-----TLILSGVTAEEAGKYTCRVSNEYGY 57
P + WL + L ++S F + L L+ T G YT +N +G
Sbjct: 275 APSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ 334
Query: 58 TETFARVDVI 67
+
Sbjct: 335 ASASIMAAFM 344
Score = 49.7 bits (118), Expect = 6e-08
Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 3/91 (3%)
Query: 79 PAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRL 138
L SV +G+D+ ++ G + W+ ++ S+ M + L
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWIL--TELEQSATVMKSGGLPSLGL 214
Query: 139 TLKRAT-DDENGTYFIVARNIYGSDRAFVTV 168
TL T D A N G V V
Sbjct: 215 TLANVTSDLNRKNVTCWAENDVGRAEVSVQV 245
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 89.5 bits (222), Expect = 6e-22
Identities = 35/168 (20%), Positives = 63/168 (37%), Gaps = 25/168 (14%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P++ W + + S L + V E+ G Y C N G
Sbjct: 236 VPQIKWRKLDGSQTS------KWLSSEP--LLHIQNVDFEDEGTYECEAENIKGRDTYQG 287
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
R+ + H +P +L +G D+ +S +G P+P V W++ + +
Sbjct: 288 RIII---------HAQPD-WLDVITD-TEADIGSDLRWSCVASGKPRPAVRWLRDGQPLA 336
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSD--RAFVTV 168
+ +R E L + +++G Y VA N +G+ A +TV
Sbjct: 337 SQNR--IEVSGG--ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380
Score = 88.4 bits (219), Expect = 2e-21
Identities = 27/168 (16%), Positives = 62/168 (36%), Gaps = 11/168 (6%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT--ET 60
WL P + +++ + L ++ A + G Y+C ++ +
Sbjct: 131 ALSYRWLLNEFPNFIPADGRRFVSQTTG--NLYIAKTEASDLGNYSCFATSHIDFITKSV 188
Query: 61 FARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKD 120
F++ +++++ + P++ P G+ ++ G+P P++ W K
Sbjct: 189 FSKFSQLSLAAEDARQYAPSIKAKFPAD-TYALTGQMVTLECFAFGNPVPQIKWRKLDGS 247
Query: 121 ITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
T+ + L ++ ++ GTY A NI G D +
Sbjct: 248 QTSKWLSSEPL------LHIQNVDFEDEGTYECEAENIKGRDTYQGRI 289
Score = 69.1 bits (169), Expect = 1e-14
Identities = 28/169 (16%), Positives = 47/169 (27%), Gaps = 17/169 (10%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
W T L P +Y + +L +I + V A++AG Y C +N G +
Sbjct: 36 PATYRWKMNGTELK-MGPDSRYRLVAGDL--VISNPVKAKDAGSYQCVATNARG--TVVS 90
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRL-AGSPKPKVTWMK--GIK 119
R + F + + G + F+ P W+
Sbjct: 91 REASLRFGF-------LQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPN 143
Query: 120 DITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
I R L + + + G Y A + V
Sbjct: 144 FIPADGRRFVSQTTG--NLYIAKTEASDLGNYSCFATSHIDFITKSVFS 190
Score = 39.8 bits (93), Expect = 2e-04
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 4/77 (5%)
Query: 95 GEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIV 154
E ++ + R +P W ++ + V + ++ D G+Y V
Sbjct: 22 EEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDA-GSYQCV 80
Query: 155 ARNIYG---SDRAFVTV 168
A N G S A +
Sbjct: 81 ATNARGTVVSREASLRF 97
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 86.8 bits (215), Expect = 7e-22
Identities = 32/179 (17%), Positives = 62/179 (34%), Gaps = 24/179 (13%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNN--LHTLILSGVTAEEAGKYTCRVSNEYGYTET 60
+P + W + P+ + + ++ + + G ++ G+Y C N G +
Sbjct: 38 EPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVS 97
Query: 61 F-ARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFS-FRLAGSPKPKVTWMKGI 118
A + + + F P VA GE G P+P + W+K
Sbjct: 98 RHASLQIAVL---------RDDFRVEP-KDTRVAKGETALLECGPPKGIPEPTLIWIKDG 147
Query: 119 KDITTSSRTMTETVNDYVR------LTLKRATDDENGTYFIVARNIYGSDR---AFVTV 168
+ M+ + VR L + + G Y +A+N+ G+ A + V
Sbjct: 148 VPLDDLKA-MSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV 205
Score = 54.1 bits (130), Expect = 1e-09
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 13/84 (15%)
Query: 3 KPEVIWLRGNTPLP-------KSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEY 55
+P +IW++ PL +S R + ++ L++S V + G Y C N
Sbjct: 138 EPTLIWIKDGVPLDDLKAMSFGASSRVRIVDG----GNLLISNVEPIDEGNYKCIAQNLV 193
Query: 56 GYTE-TFARVDVINVSSGAVKHEK 78
G E ++A++ V V + A H
Sbjct: 194 GTRESSYAKLIV-QVKAAAHHHHH 216
Score = 52.9 bits (127), Expect = 3e-09
Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 73 AVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMK-GIKDITTSSRTMTET 131
A +++ P + P ++ V E + + ++ G P+P + W K G T ++
Sbjct: 4 AGQYQSP-RIIEHPTDLV-VKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQ 61
Query: 132 VND---YVRLTLKRATDDENGTYFIVARNIYG---SDRAFVTV 168
D + T++ + + G Y+ VA+N G S A + +
Sbjct: 62 FKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 84.2 bits (208), Expect = 5e-21
Identities = 39/180 (21%), Positives = 56/180 (31%), Gaps = 23/180 (12%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLH------TLILSGVTAEEAGKYTCRVSNEYG 56
P V W + I S + VT E+ G YTC VS E G
Sbjct: 33 SPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGG 92
Query: 57 YTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFS-FRLAGSPKPKVTWM 115
+ +V +I + P T S +G + GSP + TW
Sbjct: 93 NSYGEVKVKLIVLV--------PPSKPTVNIP-SSATIGNRAVLTCSEQDGSPPSEYTWF 143
Query: 116 KGIKDITTSSRTMTETVNDYVR-------LTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
K + T+ ++ N L + + G Y ARN YG+ V
Sbjct: 144 KDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAV 203
Score = 55.7 bits (134), Expect = 2e-10
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLH-----TLILSGVTAEEAGKYTCRVSNEYGY 57
E W + +P + + +S+ + L+ ++A + G+Y+C N YG
Sbjct: 137 PSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGT 196
Query: 58 TETFARVDV 66
T V +
Sbjct: 197 PMTSNAVRM 205
Score = 50.7 bits (121), Expect = 2e-08
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 8/98 (8%)
Query: 79 PAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVR- 137
++ + + + + + S +G P+V W D T + Y
Sbjct: 3 GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDR 62
Query: 138 -------LTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+T K T ++ GTY + G+ V V
Sbjct: 63 VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKV 100
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 78.9 bits (195), Expect = 6e-20
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 1/96 (1%)
Query: 73 AVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETV 132
+ P+ V GE + ++ G+ TWMK K I S E
Sbjct: 1 GSSGSSGPQIIQFPEDQ-KVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENS 59
Query: 133 NDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ +LT+ A + G Y ++ N GS +A V +
Sbjct: 60 ENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNL 95
Score = 65.4 bits (160), Expect = 1e-14
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
W++ + + S K +E+S N L + E G YT V N+ G +
Sbjct: 36 PITCTWMKFRKQI-QESEHMK-VENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQV 93
Query: 63 RVDVI 67
+ V+
Sbjct: 94 NLTVV 98
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 84.2 bits (208), Expect = 1e-19
Identities = 24/162 (14%), Positives = 49/162 (30%), Gaps = 23/162 (14%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+ WL + L +S +T + +G YTC+ +N
Sbjct: 410 PAQYSWLIDGNIQQHTQ-------------ELFISNITEKNSGLYTCQANNSASGHSRTT 456
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
+ + + V + ++F+ + W+ G + +
Sbjct: 457 VKTITVS-------AELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNG-QSLP 508
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRA 164
S R N LTL T ++ Y +N ++R+
Sbjct: 509 VSPRLQLSNGNR--TLTLFNVTRNDARAYVCGIQNSVSANRS 548
Score = 83.5 bits (206), Expect = 2e-19
Identities = 33/166 (19%), Positives = 53/166 (31%), Gaps = 26/166 (15%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET-FA 62
+W LP SPR + + TL L VT +A Y C + N +
Sbjct: 496 TTYLWWVNGQSLP-VSPRLQLSNGN---RTLTLFNVTRNDARAYVCGIQNSVSANRSDPV 551
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
+DV P + P S G +++ S A +P P+ +W
Sbjct: 552 TLDV---------LYGPDTPIISPPDS-SYLSGANLNLSCHSASNPSPQYSWRINGIPQQ 601
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ L + + T + NGTY N+ +
Sbjct: 602 HTQ-----------VLFIAKITPNNNGTYACFVSNLATGRNNSIVK 636
Score = 79.6 bits (196), Expect = 4e-18
Identities = 35/165 (21%), Positives = 53/165 (32%), Gaps = 24/165 (14%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
+W N LP SPR + SN+ TL L VT + G Y C + NE +
Sbjct: 318 TTYLWWVNNQSLP-VSPRLQL---SNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPV 373
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITT 123
++NV P P G ++S S A +P + +W+
Sbjct: 374 --ILNV------LYGPDDPTISPSY-TYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQH 424
Query: 124 SSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ L + T+ +G Y A N
Sbjct: 425 TQ-----------ELFISNITEKNSGLYTCQANNSASGHSRTTVK 458
Score = 77.7 bits (191), Expect = 2e-17
Identities = 33/165 (20%), Positives = 56/165 (33%), Gaps = 24/165 (14%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
+W N LP SPR + + TL L VT + Y C N R
Sbjct: 140 ATYLWWVNNQSLP-VSPRLQLSNGN---RTLTLFNVTRNDTASYKCETQNPVS----ARR 191
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITT 123
D + ++ V + A ++ +T S GE+++ S A +P + +W +
Sbjct: 192 SDSVILN---VLYGPDAPTISPLNT--SYRSGENLNLSCHAASNPPAQYSWFVNGTFQQS 246
Query: 124 SSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ L + T + +G+Y A N
Sbjct: 247 TQ-----------ELFIPNITVNNSGSYTCQAHNSDTGLNRTTVT 280
Score = 75.4 bits (185), Expect = 1e-16
Identities = 27/161 (16%), Positives = 49/161 (30%), Gaps = 23/161 (14%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
+ W T + L + +T +G YTC+ N
Sbjct: 233 AQYSWFVNGTFQQSTQ-------------ELFIPNITVNNSGSYTCQAHNSDTGLNRTTV 279
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITT 123
+ V E P F+T ++ V + ++ + + W+ + +
Sbjct: 280 TTIT------VYAEPPKPFITSNNS-NPVEDEDAVALTCEPEIQNTTYLWWVNN-QSLPV 331
Query: 124 SSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRA 164
S R N LTL T ++ G Y +N D +
Sbjct: 332 SPRLQLSNDNR--TLTLLSVTRNDVGPYECGIQNELSVDHS 370
Score = 66.9 bits (163), Expect = 1e-13
Identities = 28/171 (16%), Positives = 52/171 (30%), Gaps = 18/171 (10%)
Query: 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET 60
+ VI + TP P S R ++ +L++ + + G YT V E
Sbjct: 44 QIIGYVIGTQQATPGPAYSGREIIYPNA----SLLIQNIIQNDTGFYTLHVIKSDLVNE- 98
Query: 61 FARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKD 120
+ + + + V + ++F+ W +
Sbjct: 99 -------EATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQS 150
Query: 121 ITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG---SDRAFVTV 168
+ S R N LTL T ++ +Y +N SD + V
Sbjct: 151 LPVSPRLQLSNGNR--TLTLFNVTRNDTASYKCETQNPVSARRSDSVILNV 199
Score = 48.8 bits (116), Expect = 2e-07
Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 14/69 (20%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P+ W P + L ++ +T G Y C VSN
Sbjct: 588 SPQYSWRINGIPQQHTQ-------------VLFIAKITPNNNGTYACFVSNLATGRNNSI 634
Query: 63 RVDVINVSS 71
+ VS+
Sbjct: 635 VKSI-TVSA 642
Score = 33.8 bits (77), Expect = 0.020
Identities = 11/95 (11%), Positives = 25/95 (26%), Gaps = 17/95 (17%)
Query: 91 SVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMT----------------ETVND 134
+VA G+++ +W KG + E +
Sbjct: 10 NVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYP 69
Query: 135 YVRLTLKRATDDENGTYFIVARN-IYGSDRAFVTV 168
L ++ ++ G Y + ++ A
Sbjct: 70 NASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQF 104
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 81.0 bits (200), Expect = 1e-19
Identities = 33/176 (18%), Positives = 58/176 (32%), Gaps = 23/176 (13%)
Query: 3 KPEVIWLRGNTPLPKSSPRF---KYIEDSNNLH--TLILSGVTAEEAGKYTCRVSNEYGY 57
P + W +G + + + S +L ++ + + G Y C N G
Sbjct: 38 TPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGE 97
Query: 58 TETF-ARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFR-LAGSPKPKVTWM 115
+ A ++V F P + VA+GE + G P+P ++W
Sbjct: 98 AVSHDASLEV---------AILRDDFRQNPSDV-MVAVGEPAVMECQPPRGHPEPTISWK 147
Query: 116 KGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDR---AFVTV 168
K + +T L + + G Y V N+ G A +TV
Sbjct: 148 KDGSPLDDKDERITIRGGK---LMITYTRKSDAGKYVCVGTNMVGERESEVAELTV 200
Score = 55.6 bits (134), Expect = 4e-10
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 16/85 (18%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET-F 61
+P + W + +PL I L+++ +AGKY C +N G E+
Sbjct: 141 EPTISWKKDGSPLD-DKDERITIRG----GKLMITYTRKSDAGKYVCVGTNMVGERESEV 195
Query: 62 ARVDVINVSSGAVKHEKPAMFLTRP 86
A + V E+P+ F+
Sbjct: 196 AELTV---------LERPS-FVKAA 210
Score = 47.5 bits (113), Expect = 3e-07
Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 12/105 (11%)
Query: 74 VKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMK-------GIKDITTSSR 126
+ P + P + V+ GE + + + G P P + W K D +
Sbjct: 5 QEDFPP-RIVEHPSDL-IVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM 62
Query: 127 TMTETVNDYVRLTLKRATDDENGTYFIVARNIYG---SDRAFVTV 168
+ ++R+ R + + G Y VARN G S A + V
Sbjct: 63 LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 80.3 bits (198), Expect = 1e-19
Identities = 33/177 (18%), Positives = 59/177 (33%), Gaps = 30/177 (16%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLH-------TLILSGVTAEEAGKYTCRVSNEYG 56
PEV WLR L + + + L ++ + + G+Y C V +
Sbjct: 33 PEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQ 92
Query: 57 YTET-FARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKP-KVTW 114
+ V + P FL P+ +VA + S + G P+P + W
Sbjct: 93 TFVSQPGYVGL---------EGLPY-FLEEPED-RTVAANTPFNLSCQAQGPPEPVDLLW 141
Query: 115 MKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG---SDRAFVTV 168
++ + T+ + L + ++ A N G S A +TV
Sbjct: 142 LQDAVPLATAPGHGPQRS-----LHVPGLNKT--SSFSCEAHNAKGVTTSRTATITV 191
Score = 44.5 bits (105), Expect = 3e-06
Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 14/104 (13%)
Query: 78 KPAMFLTRPDTMMSVALGEDISFS-FRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYV 136
+ + F+ P + A G + P+V W++ + + + T T+
Sbjct: 1 EESPFVGNPGNIT-GARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGED 59
Query: 137 R---------LTLKRATDDENGTYFIVARNIYG---SDRAFVTV 168
L + + G Y + + S +V +
Sbjct: 60 EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGL 103
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 80.4 bits (198), Expect = 2e-19
Identities = 34/183 (18%), Positives = 58/183 (31%), Gaps = 24/183 (13%)
Query: 1 YVKPEVIWLR-GNTPLPKSSPRFKYIEDSNNLH-----TLILSGVTAEEAGKYTCRVSNE 54
+ P V W + + + + S VT ++ G+YTC VS E
Sbjct: 28 FSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEE 87
Query: 55 YGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFS-FRLAGSPKPKVT 113
G + + V P+ + SV +G + GSP + +
Sbjct: 88 GGQNYGEVSIHL-TV------LVPPSKPTISVPS--SVTIGNRAVLTCSEHDGSPPSEYS 138
Query: 114 WMKGIKDITTSSRTMTETVNDYVR--------LTLKRATDDENGTYFIVARNIYGSDRAF 165
W K + T+ T + L T ++G Y+ A+N YG+
Sbjct: 139 WFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRS 198
Query: 166 VTV 168
Sbjct: 199 EAA 201
Score = 52.3 bits (125), Expect = 4e-09
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLH------TLILSGVTAEEAGKYTCRVSNEYG 56
E W + + + + +++ LI VTA ++G+Y C+ N YG
Sbjct: 134 PSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG 193
Query: 57 YTETFARVDVI 67
+
Sbjct: 194 TAMRSEAAHMD 204
Score = 47.7 bits (113), Expect = 2e-07
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 10/99 (10%)
Query: 78 KPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVR 137
K + T + V E I + +G P+V W T ++ Y
Sbjct: 1 KGS-VYTAQSDV-QVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYAD 58
Query: 138 --------LTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+T T +NG Y + G + V++
Sbjct: 59 RVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSI 97
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 78.6 bits (193), Expect = 1e-18
Identities = 30/188 (15%), Positives = 57/188 (30%), Gaps = 36/188 (19%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLH----------------------TLILSGVTA 41
++ WL + ++ ++ +
Sbjct: 34 LDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQL 93
Query: 42 EEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFS 101
+ G Y C+V G + V KP+ TR S +G D
Sbjct: 94 SDIGTYQCKVKKAPGVANKKFLLTV---------LVKPS--GTRCFVDGSEEIGNDFKLK 142
Query: 102 -FRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG 160
GS + W K T + + E + +++K A+ + +GTY +N G
Sbjct: 143 CEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPV--ISVKNASSEYSGTYSCTVQNRVG 200
Query: 161 SDRAFVTV 168
SD+ + +
Sbjct: 201 SDQCMLRL 208
Score = 54.7 bits (131), Expect = 6e-10
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+ W + + +P + + + ++E +G Y+C V N G +
Sbjct: 151 PLQFEWQKLSDSQTMPTPWLAEMTSP----VISVKNASSEYSGTYSCTVQNRVGSDQCML 206
Query: 63 RVDVI 67
R+DV+
Sbjct: 207 RLDVV 211
Score = 32.0 bits (72), Expect = 0.058
Identities = 14/113 (12%), Positives = 29/113 (25%), Gaps = 28/113 (24%)
Query: 84 TRPDTMMSVALGEDISFSFRLAGSPKPK----VTWMKGIKDITTSSRTMTETVNDYVR-- 137
T P+ + A GE + SP+ + + W+ D + + D +
Sbjct: 4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDN 63
Query: 138 ----------------------LTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ + + GTY + G +
Sbjct: 64 YYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLL 116
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 77.6 bits (191), Expect = 1e-18
Identities = 30/172 (17%), Positives = 54/172 (31%), Gaps = 27/172 (15%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
W + L + + + ++ AE++G+Y C V + + A
Sbjct: 35 MYSYWTKNGVELTAT-------RKNASNMEYRINKPRAEDSGEYHC-VYHFVSAPKANAT 86
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT- 122
++V P + + G+D + G P P+ W K +
Sbjct: 87 IEV---------KAAP-DITGHKRSE-NKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFE 135
Query: 123 ----TSSRTMTETVNDYVRLTLKRA--TDDENGTYFIVARNIYGSDRAFVTV 168
+S R +Y L + T+D G Y A N GS +
Sbjct: 136 EISNSSGRFFIINKENYTELNIVNLQITEDP-GEYECNATNSIGSASVSTVL 186
Score = 52.9 bits (127), Expect = 2e-09
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 3 KPEVIWLRGNTPLP----KSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
PE +W + + SS RF I N I++ E+ G+Y C +N G
Sbjct: 121 HPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSA 180
Query: 59 ETFARVDV 66
+ V
Sbjct: 181 SVSTVLRV 188
Score = 48.7 bits (116), Expect = 7e-08
Identities = 12/96 (12%), Positives = 32/96 (33%), Gaps = 10/96 (10%)
Query: 76 HEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVT--WMKGIKDITTSSRTMTETVN 133
+P +T + ++ ++ L S + W K ++T + + +
Sbjct: 1 QNEPR-IVTSEEVII-RDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNME- 57
Query: 134 DYVRLTLKRATDDENGTYFIVARNIYGSDR-AFVTV 168
+ + +++G Y V + A + V
Sbjct: 58 ----YRINKPRAEDSGEYHCVYHFVSAPKANATIEV 89
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 77.2 bits (189), Expect = 1e-17
Identities = 28/176 (15%), Positives = 51/176 (28%), Gaps = 17/176 (9%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+ W + N L ++ S + LI+ E++G+Y C V + +
Sbjct: 158 YNNITWYKNNQELIIDGTKY-----SQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDI 212
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPK----VTWMKGI 118
V V + F D ++V +GE + + + + W
Sbjct: 213 VVSR--CKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPS 270
Query: 119 KDITTSSRTMTETVNDYVR-----LTLKRAT-DDENGTYFIVARNIYGSDRAFVTV 168
I + + L + T + TY N Y TV
Sbjct: 271 GWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTV 326
Score = 59.5 bits (143), Expect = 3e-11
Identities = 20/168 (11%), Positives = 47/168 (27%), Gaps = 24/168 (14%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAG-KYTCRVSNEYGYTE-TF 61
V W + + R K L ++ T+ ++ +Y C V+ + G
Sbjct: 68 NVVNWEKIGKTRRPLNRRVKN-------GDLWIANYTSNDSHRRYLCTVTTKNGDCVQGI 120
Query: 62 ARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLA-GSPKPKVTWMKGIKD 120
R + + P + I + +TW K ++
Sbjct: 121 VRSHI---------RKPP--SCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQE 169
Query: 121 ITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ +++ L + +++G Y + + V
Sbjct: 170 LIIDGTKYSQSGQ---NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVV 214
Score = 43.3 bits (101), Expect = 1e-05
Identities = 16/70 (22%), Positives = 21/70 (30%), Gaps = 4/70 (5%)
Query: 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNL---HTLILSGVTAEEAGK-YTCRVSNEYG 56
+ W + + I S+ TL VT E G YTCR N Y
Sbjct: 259 VDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYF 318
Query: 57 YTETFARVDV 66
V +
Sbjct: 319 DKTLTTTVVL 328
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 72.0 bits (177), Expect = 2e-17
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 1/87 (1%)
Query: 82 FLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLK 141
LT + + G + G+P P TW G + + + + +
Sbjct: 5 ILTASRKI-KIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFP 63
Query: 142 RATDDENGTYFIVARNIYGSDRAFVTV 168
A ++G Y + +N G D A V
Sbjct: 64 SAKRADSGNYKLKVKNELGEDEAIFEV 90
Score = 61.6 bits (150), Expect = 2e-13
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P W G++ +P ++ ++ ++ ++G Y +V NE G E
Sbjct: 31 DPTATWTVGDSGAA-LAPELL-VDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIF 88
Query: 63 RVDV 66
V V
Sbjct: 89 EVIV 92
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 76.1 bits (187), Expect = 2e-17
Identities = 21/168 (12%), Positives = 46/168 (27%), Gaps = 23/168 (13%)
Query: 5 EVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARV 64
V W +P ++ + TL T + G Y C + T +
Sbjct: 31 SVEWDGPISPYWT-------LDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHL 83
Query: 65 DVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAG-SPKPKVTWMKGIKDITT 123
V + + ++V G++ + + K V+ M+
Sbjct: 84 YV---------KDPAHSWNLLAQE-VTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVL 133
Query: 124 SSRTMTETVNDYVRLTLKRATDDENGTYFIVARN---IYGSDRAFVTV 168
+ +++A ++ TY S ++ V
Sbjct: 134 RKTVYFFSPWRG--FIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKV 179
Score = 75.0 bits (184), Expect = 7e-17
Identities = 26/171 (15%), Positives = 45/171 (26%), Gaps = 15/171 (8%)
Query: 2 VKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNE-YGYTET 60
+K V +R + + + I+ ++ Y C+ T T
Sbjct: 118 LKDSVSLMREGGRQVLRKTVYFF----SPWRGFIIRKAKVLDSNTYVCKTMVNGRESTST 173
Query: 61 FARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMK---G 117
+ V V P P + GE + +K
Sbjct: 174 GIWLKVNRVHPE------PPQIKLEPSKL-VRIRGEAAQIVCSATNAEVGFNVILKRGDT 226
Query: 118 IKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+I +S L+L + G Y VA N G+ A +
Sbjct: 227 KLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNF 277
Score = 51.5 bits (123), Expect = 1e-08
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 3 KPEVIWL-RGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
+ L RG+T L + L L+ V ++AG Y+C SN+ G
Sbjct: 215 VGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTAT 274
Query: 62 ARVDVI 67
V+
Sbjct: 275 MNFQVV 280
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 72.0 bits (177), Expect = 4e-17
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P++ W R N + ++ R +D+ TL++ V ++AG YT NE G T
Sbjct: 44 PPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNT 103
Query: 63 RVDVI 67
R+DV
Sbjct: 104 RLDVT 108
Score = 61.6 bits (150), Expect = 3e-13
Identities = 19/103 (18%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Query: 70 SSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSR--T 127
+ +H++ MF+ +P V G+ + +++ P PK+ W + + + ++ +
Sbjct: 6 HHHSHEHKRAPMFIYKP-QSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRIS 64
Query: 128 MTETVNDYVRLTLKRATDDENGTYFIVARNIYGSD--RAFVTV 168
+ + V L +K + G Y + A N G + V
Sbjct: 65 LYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDV 107
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 70.8 bits (174), Expect = 6e-17
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
PE W + + + S R + +N+ L++ VT E++ + N G T + A
Sbjct: 34 DPECEWYKNGVKI-ERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHA 92
Query: 63 RVDV 66
+ V
Sbjct: 93 FLLV 96
Score = 65.0 bits (159), Expect = 1e-14
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Query: 78 KPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSR-TMTETVNDYV 136
+ R +V G D F R+ G P P+ W K I S R ++
Sbjct: 4 EAPKIFERI-QSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVC 62
Query: 137 RLTLKRATDDENGTYFIVARNIYGSD--RAFVTV 168
L ++ T +++ + + A NI G AF+ V
Sbjct: 63 ELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 70.0 bits (172), Expect = 1e-16
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 3/99 (3%)
Query: 72 GAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTET 131
G + R V G++ F + P +V W ++ SS+
Sbjct: 1 GPFTLDHAPRITLRM-RSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTN 59
Query: 132 VNDYVRLTLKRATDDENGTYFIVARNIYGSDR--AFVTV 168
+ + L + D++GTY V N G A + V
Sbjct: 60 TSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDV 98
Score = 68.5 bits (168), Expect = 6e-16
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
EV W L + S + +++ + TL + +++G Y +N G +A
Sbjct: 37 TAEVKWYHNGVEL-QESSKIH-YTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYA 94
Query: 63 RVDV 66
+DV
Sbjct: 95 TLDV 98
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 73.8 bits (181), Expect = 2e-16
Identities = 23/171 (13%), Positives = 43/171 (25%), Gaps = 15/171 (8%)
Query: 2 VKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
++ V +R + + H + ++ Y C +
Sbjct: 118 LEAGVSLVRVRGRPLMRHTNYSFSPW----HGFTIHRAKFIQSQDYQCSALMGGRKVMSI 173
Query: 62 -ARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKD 120
R+ V V G P P + GE + +++
Sbjct: 174 SIRLKVQKVIPG------PPALTLVPAEL-VRIRGEAAQIVCSASSVDVNFDVFLQHNNT 226
Query: 121 ITTSSRTMTETVNDYVR---LTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ N Y + L L + G Y VA N+ G +
Sbjct: 227 KLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFF 277
Score = 71.9 bits (176), Expect = 8e-16
Identities = 24/168 (14%), Positives = 44/168 (26%), Gaps = 23/168 (13%)
Query: 5 EVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARV 64
V W SP + D ++ L + T + G Y C + +
Sbjct: 31 SVEWDGPP------SPHWTLYSDGSS-SILSTNNATFQNTGTYRCTEPGDPLGGSAAIHL 83
Query: 65 DVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAG-SPKPKVTWMKGIKDITT 123
V + PA + V +D L + V+ ++
Sbjct: 84 YV----------KDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLM 133
Query: 124 SSRTMTETVNDYVRLTLKRATDDENGTYFIVARN---IYGSDRAFVTV 168
+ + T+ RA ++ Y A S + V
Sbjct: 134 RHTNYSFSPWHG--FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKV 179
Score = 53.4 bits (128), Expect = 3e-09
Identities = 17/64 (26%), Positives = 23/64 (35%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
+V NT L + + TL L V + AG Y+C SN G T
Sbjct: 217 FDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMF 276
Query: 64 VDVI 67
V+
Sbjct: 277 FRVV 280
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 69.2 bits (170), Expect = 3e-16
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
KP V WLR P+ + R E L L + +AG YTC+ NEYG + A
Sbjct: 34 KPVVSWLRNRQPV-RPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEA 92
Query: 63 RVDV 66
R++V
Sbjct: 93 RLEV 96
Score = 64.2 bits (157), Expect = 2e-14
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 77 EKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSS-RTMTETVNDY 135
+ P F SV G+D+ S R+ G PKP V+W++ + + R E
Sbjct: 3 KAPPTFKVSL-MDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGL 61
Query: 136 VRLTLKRATDDENGTYFIVARNIYGSDR--AFVTV 168
RL + A + G Y A N YG+ + A + V
Sbjct: 62 CRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 69.3 bits (170), Expect = 3e-16
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
KP++ W + + S + D + +L + T ++ G YT +N G
Sbjct: 37 KPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTG 96
Query: 63 RVDVINVSSG 72
R+ V V+SG
Sbjct: 97 RLMVQAVNSG 106
Score = 65.8 bits (161), Expect = 7e-15
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 72 GAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSR--TMT 129
G+ F + + G ++F+ R+AG+PKPK+ W K K I+ S T+
Sbjct: 1 GSSGSSGAPFFEMKL-KHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQ 59
Query: 130 ETVNDYVRLTLKRATDDENGTYFIVARNIYGSD--RAFVTV 168
++ L +T D++G Y I+A N G + V
Sbjct: 60 RDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMV 100
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 69.0 bits (169), Expect = 3e-16
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P + WL+ + R + N +LI+ V + G YTC V NEYG
Sbjct: 37 MPTMRWLKNGKEFKQE-HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY 95
Query: 63 RVDVI 67
+DV+
Sbjct: 96 HLDVV 100
Score = 55.5 bits (134), Expect = 5e-11
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 4/97 (4%)
Query: 76 HEKPAMFLTRP---DTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSR-TMTET 131
+++ + + +V + F G+P P + W+K K+ R +
Sbjct: 1 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKV 60
Query: 132 VNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
N + L ++ + G Y V N YGS +
Sbjct: 61 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 97
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 71.2 bits (174), Expect = 4e-16
Identities = 19/181 (10%), Positives = 47/181 (25%), Gaps = 44/181 (24%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLH---------------TLILSGVTAEEAGKY 47
+ W N + + + L+ LI+ + E++ Y
Sbjct: 24 SIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 83
Query: 48 TCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGS 107
C V ++ + V ++ DT + G+ ++ +
Sbjct: 84 ICEVEDQKEEVQLL----VFGLT-------------ANSDT--HLLQGQSLTLTLESPPG 124
Query: 108 PKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVT 167
P V +T L++ + ++GT+ +
Sbjct: 125 SSPSVQCRSPRGKNIQGGKT----------LSVSQLELQDSGTWTCTVLQNQKKVEFKID 174
Query: 168 V 168
+
Sbjct: 175 I 175
Score = 45.4 bits (107), Expect = 1e-06
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 12/65 (18%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P V + TL +S + +++G +TC V E
Sbjct: 126 SPSVQCRSPRGKNIQGG------------KTLSVSQLELQDSGTWTCTVLQNQKKVEFKI 173
Query: 63 RVDVI 67
+ V+
Sbjct: 174 DIVVL 178
Score = 30.3 bits (68), Expect = 0.22
Identities = 9/71 (12%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
Query: 95 GEDISFSFRLAGSPKPKVTWMKG--IKDITTSSRTMTETVNDYVRLTLKRATDDENGTYF 152
G+ + + + + W IK + +T+ + R + + G +
Sbjct: 10 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69
Query: 153 IVARNIYGSDR 163
++ +N+ D
Sbjct: 70 LIIKNLKIEDS 80
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 69.9 bits (171), Expect = 6e-16
Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 9/137 (6%)
Query: 36 LSGVTAEEA-GKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVAL 94
+SG++ +A G N A ++ + + H KP F M V
Sbjct: 1 ISGMSGRKASGSSPTSPINANKVENEDAFLEEV---AEEKPHVKP-YFTKTILDM-EVVE 55
Query: 95 GEDISFSFRLAGSPKPKVTWMKGIKDITTSSR-TMTETVNDYVRLTLKRATDDENGTYFI 153
G F ++ G P P+V W K + S + LT+ D++ Y
Sbjct: 56 GSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC 115
Query: 154 VARNIYGSD--RAFVTV 168
A N G A + V
Sbjct: 116 KAVNSLGEATCTAELLV 132
Score = 68.0 bits (166), Expect = 3e-15
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
PEV+W + + P+ S F+ D +L +S V ++ KYTC+ N G A
Sbjct: 70 DPEVMWFKDDNPVK-ESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTA 128
Query: 63 RVDV 66
+ V
Sbjct: 129 ELLV 132
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 67.7 bits (166), Expect = 1e-15
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P+V W + +S K I LH+LI V A +AG Y C N G
Sbjct: 34 APDVSWYLNGRTV-QSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTV 92
Query: 63 RVDVI 67
++DV+
Sbjct: 93 QLDVL 97
Score = 54.6 bits (132), Expect = 9e-11
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Query: 79 PAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSR-TMTETVNDYVR 137
P F+ P+ M S+ G F+++G P P V+W + + + M +
Sbjct: 5 PPRFIQVPENM-SIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS 63
Query: 138 LTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
L + + G Y VA+N G V +
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAGEATFTVQL 94
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 72.2 bits (176), Expect = 1e-15
Identities = 35/184 (19%), Positives = 55/184 (29%), Gaps = 22/184 (11%)
Query: 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEY-GYTE 59
VKP + W G + + I + L G YTC V+ G T
Sbjct: 152 SVKPTITWYMGCYKIQNFN---NVIPEGM---NLSFLIALISNNGNYTCVVTYPENGRTF 205
Query: 60 TFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISF----SFRLAGSPKPKVTWM 115
R + V P + + GE++ F + +V W
Sbjct: 206 HLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWT 265
Query: 116 KGIKDIT----------TSSRTMTETVNDYVRLTLKRAT-DDENGTYFIVARNIYGSDRA 164
K + S + TE L++K+ T +D +Y AR+ G
Sbjct: 266 IDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAK 325
Query: 165 FVTV 168
V
Sbjct: 326 AAKV 329
Score = 67.2 bits (163), Expect = 6e-14
Identities = 28/168 (16%), Positives = 49/168 (29%), Gaps = 9/168 (5%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSN---NLHTLILSGVTAEEAGKYTCRVSNEYGYTE 59
+IW P + ++ L + G YTC + N ++
Sbjct: 47 GLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSK 106
Query: 60 TFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIK 119
++V+ S K + + + + S KP +TW G
Sbjct: 107 VAFPLEVVQKDSCFNSPMKLPV--HKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCY 164
Query: 120 DITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVT 167
I + + E +N L+ A NG Y V +T
Sbjct: 165 KIQNFNNVIPEGMN----LSFLIALISNNGNYTCVVTYPENGRTFHLT 208
Score = 47.9 bits (113), Expect = 3e-07
Identities = 14/74 (18%), Positives = 20/74 (27%), Gaps = 9/74 (12%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIE--------DSNNLHTLILSGVTAE-EAGKYTCRVSN 53
+ EV W + E D L + VT+E Y C +
Sbjct: 259 RNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARS 318
Query: 54 EYGYTETFARVDVI 67
G A+V
Sbjct: 319 AKGEVAKAAKVKQK 332
Score = 39.9 bits (92), Expect = 2e-04
Identities = 11/88 (12%), Positives = 25/88 (28%), Gaps = 5/88 (5%)
Query: 86 PDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYV-----RLTL 140
P + + F++ A S + W +D + + L
Sbjct: 24 PARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWF 83
Query: 141 KRATDDENGTYFIVARNIYGSDRAFVTV 168
+ ++ G Y + RN + +
Sbjct: 84 RPTLLNDTGNYTCMLRNTTYCSKVAFPL 111
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 71.3 bits (174), Expect = 2e-15
Identities = 23/167 (13%), Positives = 49/167 (29%), Gaps = 16/167 (9%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLH-TLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
++ W +P +S ++ + + IL + + TC+V +E
Sbjct: 148 AQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLL 207
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKP-KVTWMKGIKDI 121
V + V P + + + +P+P W + +
Sbjct: 208 TV-NLTVYY-------PPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPL 259
Query: 122 TTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ L ++ N T N G+ +A +TV
Sbjct: 260 PPFAVAQGAQ------LLIRPVDKPINTTLICNVTNALGARQAELTV 300
Score = 54.7 bits (131), Expect = 1e-09
Identities = 25/185 (13%), Positives = 47/185 (25%), Gaps = 32/185 (17%)
Query: 5 EVIWLRGNTPLP------------KSSPRFKYIEDSNNL----HTLILSGVTAEEAGKYT 48
++ W R S R +++ +L + G+ E+ G YT
Sbjct: 36 QLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYT 95
Query: 49 CRVSN-EYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFS-FRLAG 106
C G + V KP + G
Sbjct: 96 CLFVTFPQGSRSVDIWLRV---------LAKPQNTAEVQKV--QLTGEPVPMARCVSTGG 144
Query: 107 SPKPKVTWMKGIKDITTSSRTMTE---TVNDYVRLTLKRATDDENGTYFIVARNIYGSDR 163
P ++TW + + +S+ TV L ++ + +
Sbjct: 145 RPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKP 204
Query: 164 AFVTV 168
+TV
Sbjct: 205 QLLTV 209
Score = 49.3 bits (117), Expect = 8e-08
Identities = 12/62 (19%), Positives = 17/62 (27%), Gaps = 8/62 (12%)
Query: 5 EVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARV 64
W PLP + L++ V C V+N G + V
Sbjct: 249 GYNWSTTMGPLPPFA------VAQGA--QLLIRPVDKPINTTLICNVTNALGARQAELTV 300
Query: 65 DV 66
V
Sbjct: 301 QV 302
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 67.3 bits (165), Expect = 2e-15
Identities = 18/67 (26%), Positives = 33/67 (49%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
PEV W G + +IE++++L TLI+ V ++ G YT + NE+G
Sbjct: 34 TPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATV 93
Query: 63 RVDVINV 69
+ + ++
Sbjct: 94 NIHIRSI 100
Score = 65.8 bits (161), Expect = 5e-15
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 79 PAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSS--RTMTETVNDYV 136
P P + S+ G+ ++ + G P P+VTW G + I + R E +D
Sbjct: 5 PPKIEALPSDI-SIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLT 63
Query: 137 RLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
L + + G Y + N +GSD A V +
Sbjct: 64 TLIIMDVQKQDGGLYTLSLGNEFGSDSATVNI 95
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 66.6 bits (163), Expect = 2e-15
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
+V W G L ++S +++ + + + L + +T + G Y C+V N+YG ++A
Sbjct: 32 TQVTWYFGVRQL-ENSEKYEITYE-DGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAE 89
Query: 64 VDV 66
+ V
Sbjct: 90 LFV 92
Score = 60.8 bits (148), Expect = 5e-13
Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 80 AMFLTRPDTMMSVALGEDISFSFRLAGSPKP-KVTWMKGIKDITTSSRTMTETVNDYVRL 138
AM + G + + ++ + +VTW G++ + S + + L
Sbjct: 2 AMV-SGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAIL 60
Query: 139 TLKRATDDENGTYFIVARNIYGSD--RAFVTV 168
+K T ++GTY N YG D A + V
Sbjct: 61 YVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 67.0 bits (164), Expect = 2e-15
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P V+W +G L +S R H L+L+ +AG Y CR N G A
Sbjct: 42 PPVVVWEKGGQQLA-ASERLS-FPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAA 99
Query: 63 RVDVI 67
V V+
Sbjct: 100 AVTVL 104
Score = 64.3 bits (157), Expect = 2e-14
Identities = 26/100 (26%), Positives = 35/100 (35%), Gaps = 1/100 (1%)
Query: 69 VSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTM 128
+ + + P FL P + V G + + G P P V W KG + + S R
Sbjct: 3 MKASSGDQGSPPCFLRFPRPV-RVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLS 61
Query: 129 TETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
L L A + G Y ARN G A V
Sbjct: 62 FPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAV 101
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 70.5 bits (172), Expect = 3e-15
Identities = 20/166 (12%), Positives = 37/166 (22%), Gaps = 16/166 (9%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
V W + + L C V+ +
Sbjct: 166 SVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLT 225
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKP-KVTWMKGIKDIT 122
++V +P + + D D+ + + +P + W +
Sbjct: 226 LNV---------QYEPEVTIEGFDG-NWYLQRMDVKLTCKADANPPATEYHWTTLNGSLP 275
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
T+ GTY A N G+ V V
Sbjct: 276 KGVEAQNRTL-----FFKGPINYSLAGTYICEATNPIGTRSGQVEV 316
Score = 62.8 bits (152), Expect = 2e-12
Identities = 26/163 (15%), Positives = 49/163 (30%), Gaps = 10/163 (6%)
Query: 10 RGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNE-YGYTETFARVDVIN 68
G + L R +++ S T+ LS + E+ G Y C + G E+ + V+
Sbjct: 70 MGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVM- 128
Query: 69 VSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLA-GSPKPKVTWMKGIKDITTSSRT 127
K + + + A G P V+W +K
Sbjct: 129 -----AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEI 183
Query: 128 MTE--TVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
TV R L + + + + + +T+
Sbjct: 184 RNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTL 226
Score = 49.0 bits (116), Expect = 1e-07
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 7/62 (11%)
Query: 5 EVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARV 64
E W N LPK ++ N + AG Y C +N G V
Sbjct: 264 EYHWTTLNGSLPKGV-------EAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEV 316
Query: 65 DV 66
++
Sbjct: 317 NI 318
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 66.6 bits (163), Expect = 3e-15
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 79 PAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRL 138
A LT+P +M +V GE FS G P P VTW++ + ++TS+R T
Sbjct: 14 AARILTKPRSM-TVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTF 72
Query: 139 TLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ + G Y +V N G A T+
Sbjct: 73 EISSVQASDEGNYSVVVENSEGKQEAEFTL 102
Score = 65.5 bits (160), Expect = 1e-14
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P V WLR L +S R + + + T +S V A + G Y+ V N G E
Sbjct: 43 VPTVTWLRKGQVL-STSARHQ-VTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEF 100
Query: 63 RVDV 66
+ +
Sbjct: 101 TLTI 104
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 66.2 bits (162), Expect = 4e-15
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P++ W P+ + K + N +H+LI+ VT+ +AG YTC +N G
Sbjct: 38 TPDLSWQLDGKPV-RPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSL 96
Query: 63 RVDVI 67
+ V
Sbjct: 97 ELVVA 101
Score = 55.1 bits (133), Expect = 9e-11
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Query: 75 KHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSR-TMTETVN 133
+P FL P + +V G+ +++G P P ++W K + S M N
Sbjct: 6 SGFRP-HFLQAPGDL-TVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVREN 63
Query: 134 DYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
L ++ T + G Y +A N G + + +
Sbjct: 64 GVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLEL 98
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 68.5 bits (167), Expect = 5e-15
Identities = 28/183 (15%), Positives = 62/183 (33%), Gaps = 31/183 (16%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNL---------------HTLILSGVTAEEAGKYT 48
W +GNT +++ +SN +L+ +T ++ G YT
Sbjct: 29 GAFAWYKGNTTAI-DKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYT 87
Query: 49 CRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSP 108
+++E V FL +T +V + ++ + L+
Sbjct: 88 LDMTDENYRRTQATVRFH-------VHQPVTQPFLQVTNT--TVKELDSVTLT-CLSNDI 137
Query: 109 KPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG---SDRAF 165
+ W+ + + + R MT + N+ + L + ++ G Y N S+
Sbjct: 138 GANIQWLFNSQSLQLTER-MTLSQNNSI-LRIDPIKREDAGEYQCEISNPVSVRRSNSIK 195
Query: 166 VTV 168
+ +
Sbjct: 196 LDI 198
Score = 50.8 bits (121), Expect = 2e-08
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYG 56
+ WL + L + R S N L + + E+AG+Y C +SN
Sbjct: 138 GANIQWLFNSQSLQ-LTERMTL---SQNNSILRIDPIKREDAGEYQCEISNPVS 187
Score = 28.5 bits (63), Expect = 0.81
Identities = 13/95 (13%), Positives = 22/95 (23%), Gaps = 16/95 (16%)
Query: 83 LTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKG--------IKDITTSSRTMT----- 129
+T VA ++ W KG I +S
Sbjct: 2 VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAY 61
Query: 130 ---ETVNDYVRLTLKRATDDENGTYFIVARNIYGS 161
E + L + T + G Y + +
Sbjct: 62 SGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYR 96
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 67.4 bits (164), Expect = 1e-14
Identities = 24/186 (12%), Positives = 44/186 (23%), Gaps = 31/186 (16%)
Query: 3 KPEVIWLRGNTPLPKS---------------SPRFKYIEDSNNLHTLILSGVTAEEAGKY 47
+ EV W + + F I S N L+++ G Y
Sbjct: 23 EIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNY 82
Query: 48 TCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGS 107
CR+ + V+ KP + ++ + +
Sbjct: 83 LCRMKLGETEVTKQEHLSVV----------KPLTLSVHSER-SQFPDFSVLTVTCTVNAF 131
Query: 108 PKPKVTWMKG----IKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDR 163
P P V W+ + M E + V +N
Sbjct: 132 PHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAH 191
Query: 164 A-FVTV 168
+V+
Sbjct: 192 GVYVSG 197
Score = 33.8 bits (77), Expect = 0.014
Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 20/98 (20%)
Query: 91 SVALGEDISFS---FRLAGSPKPKVTWMK-GIKDITTSSRTMTETV-------------- 132
+ LGE ++ + R++ P+ +V+W K G + M V
Sbjct: 2 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH 61
Query: 133 --NDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ L + A +G Y + +
Sbjct: 62 RSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHL 99
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 65.1 bits (159), Expect = 2e-14
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Query: 76 HEKPAMFLTRP-DTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVND 134
E P + L R +GE ++ G P+P+V W KG + TS + T +
Sbjct: 19 AEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHV-RTSDF 77
Query: 135 YVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+++A ++G Y + + D A + +
Sbjct: 78 DTVFFVRQAARSDSGEYELSVQIENMKDTATIRI 111
Score = 57.8 bits (140), Expect = 1e-11
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+P+V+W +G PL S R + S+ + ++G+Y V E
Sbjct: 53 RPQVVWTKGGAPLDTS--RVH-VRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATI 109
Query: 63 RVDVI 67
R+ V+
Sbjct: 110 RIRVV 114
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 68.0 bits (165), Expect = 2e-14
Identities = 26/165 (15%), Positives = 48/165 (29%), Gaps = 25/165 (15%)
Query: 27 DSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRP 86
+ TL L+ V ++ G+Y C+V+ TE +D +V H
Sbjct: 85 ANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEF--GLDAKSVVLKVTGHTPSNNVHVST 142
Query: 87 DTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVR--------- 137
++ V G DI+ + VTW G + + + +
Sbjct: 143 AEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSE 202
Query: 138 ------------LTLKRATDDENGTYFIVARNIYGSDR--AFVTV 168
L ++ A + G + G T+
Sbjct: 203 IAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
Score = 45.7 bits (107), Expect = 1e-06
Identities = 11/86 (12%), Positives = 21/86 (24%), Gaps = 19/86 (22%)
Query: 3 KPEVIWLRGNTPLPKS-------------------SPRFKYIEDSNNLHTLILSGVTAEE 43
V W G T S + L++ +
Sbjct: 165 NANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITD 224
Query: 44 AGKYTCRVSNEYGYTETFARVDVINV 69
AG+ C ++ G + ++ V
Sbjct: 225 AGRVWCELATGQGELDADRSSTILKV 250
Score = 31.0 bits (69), Expect = 0.13
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 81 MFLTRPDTMMSVALGEDISFS---FRLAGSPKPKVTWMKGIKDITTS 124
M + T + V G + + P ++W+KG ++
Sbjct: 3 MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRST 49
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 68.7 bits (167), Expect = 2e-14
Identities = 19/181 (10%), Positives = 48/181 (26%), Gaps = 44/181 (24%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLH---------------TLILSGVTAEEAGKY 47
+ W N + + + L+ LI+ + E++ Y
Sbjct: 23 SIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 82
Query: 48 TCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGS 107
C V ++ + V +++ DT + G+ ++ +
Sbjct: 83 ICEVEDQKEEVQLL----VFGLTA-------------NSDT--HLLQGQSLTLTLESPPG 123
Query: 108 PKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVT 167
P V +T L++ + ++GT+ +
Sbjct: 124 SSPSVQCRSPRGKNIQGGKT----------LSVSQLELQDSGTWTCTVLQNQKKVEFKID 173
Query: 168 V 168
+
Sbjct: 174 I 174
Score = 60.2 bits (145), Expect = 2e-11
Identities = 33/177 (18%), Positives = 56/177 (31%), Gaps = 23/177 (12%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P V PR K I+ TL +S + +++G +TC V E
Sbjct: 125 SPSVQCRS---------PRGKNIQGGK---TLSVSQLELQDSGTWTCTVLQNQKKVEFKI 172
Query: 63 RVDVI---NVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAG--SPKPKVTWMKG 117
+ V+ SS K E + + P L ++ S K +T+
Sbjct: 173 DIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLK 232
Query: 118 IKDITTSSRTMTETVNDY----VRLTLKRATDDEN--GTYFIVARNIYGSDRAFVTV 168
K+++ T + + LTL +A G + G V +
Sbjct: 233 NKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNL 289
Score = 54.0 bits (129), Expect = 3e-09
Identities = 17/152 (11%), Positives = 34/152 (22%), Gaps = 35/152 (23%)
Query: 8 WLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEA--GKYTCRVSNEYGYTETFARVD 65
+ + + K L L + A G T + + G +
Sbjct: 231 LKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLV 290
Query: 66 VINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSS 125
V+ + + G SPK ++ K+ S
Sbjct: 291 VMRATQ-------------LQKNLTCEVWG---------PTSPKLMLSLKLENKEAKVSK 328
Query: 126 RTMTETVNDYVRLTLKRATDDENGTYFIVARN 157
R + E G + + +
Sbjct: 329 -----------REKAVWVLNPEAGMWQCLLSD 349
Score = 27.1 bits (59), Expect = 3.3
Identities = 9/71 (12%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
Query: 95 GEDISFSFRLAGSPKPKVTWMKG--IKDITTSSRTMTETVNDYVRLTLKRATDDENGTYF 152
G+ + + + + W IK + +T+ + R + + G +
Sbjct: 9 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68
Query: 153 IVARNIYGSDR 163
++ +N+ D
Sbjct: 69 LIIKNLKIEDS 79
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 63.5 bits (155), Expect = 4e-14
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+P IW + + ++K ED L + ++G YTC V N G +
Sbjct: 35 RPTAIWTKDGKAI-TQGGKYKLSED-KGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSC 92
Query: 63 RVDV 66
++ +
Sbjct: 93 KLTI 96
Score = 61.5 bits (150), Expect = 2e-13
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 4/95 (4%)
Query: 76 HEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDY 135
KP + +T +V+ F+ + G P+P W K K IT +
Sbjct: 4 SSKP-VIVTGLQDT-TVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGG 61
Query: 136 VRLTLKRATDDENGTYFIVARNIYGSD--RAFVTV 168
L + + ++G Y +N GS +T+
Sbjct: 62 FFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 65.8 bits (160), Expect = 6e-14
Identities = 25/173 (14%), Positives = 54/173 (31%), Gaps = 23/173 (13%)
Query: 4 PEVIWLRGNTPL-----PKSSPRFKYIED--SNNLHTLILSGVTAEEAGKYTCRVSNEYG 56
E+ +R + S R +E+ + V ++G+Y C V
Sbjct: 32 TELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAA 91
Query: 57 YTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMK 116
+ + V V A ++ ++ V ++ + + G P +V+W
Sbjct: 92 WDYKYLTVKV------------KASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQN 139
Query: 117 -GIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ T+ RT L LK + + + N + + +
Sbjct: 140 VSVPANTSHIRTPEGLYQVTSVLRLK---PQPSRNFSCMFWNAHMKELTSAII 189
Score = 38.1 bits (88), Expect = 5e-04
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 6/67 (8%)
Query: 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNL-HTLILSGVTAEEAGKYTCRVSNEYGYTE 59
Y EV W + P S +I L + + + + ++C N +
Sbjct: 130 YPLAEVSWQNVSVPANTS-----HIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKEL 184
Query: 60 TFARVDV 66
T A +D
Sbjct: 185 TSAIIDP 191
Score = 37.3 bits (86), Expect = 8e-04
Identities = 10/94 (10%), Positives = 30/94 (31%), Gaps = 9/94 (9%)
Query: 84 TRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTM----TETVNDYVR-- 137
T P + +V +G +S ++ ++ + ++ + + +
Sbjct: 6 TAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLG 65
Query: 138 ---LTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ ++G Y + D ++TV
Sbjct: 66 KALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTV 99
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 62.8 bits (153), Expect = 8e-14
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 89 MMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVR-----LTLKRA 143
+ S F + G+PKP + W + S T+ L L
Sbjct: 10 LESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNP 69
Query: 144 TDDENGTYFIVARNIYGSDRAFVTV 168
T NG Y ++A+N YG D ++
Sbjct: 70 THMNNGDYTLIAKNEYGKDEKQISA 94
Score = 59.4 bits (144), Expect = 2e-12
Identities = 16/68 (23%), Positives = 21/68 (30%), Gaps = 3/68 (4%)
Query: 3 KPEVIWLRGNTPLPKSSP---RFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTE 59
KP + W L +S + + L L T G YT NEYG E
Sbjct: 30 KPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDE 89
Query: 60 TFARVDVI 67
+
Sbjct: 90 KQISAHFM 97
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 62.0 bits (151), Expect = 2e-13
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P+++W + N L + L + V E+ G YTC+ + G + A
Sbjct: 39 PPQIMWFKDNETLV-EDSGIVL---KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEA 94
Query: 63 RVDV 66
+
Sbjct: 95 FFII 98
Score = 58.1 bits (141), Expect = 7e-12
Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 76 HEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDY 135
P + + ++GE I S +G+P P++ W K + + S + + +
Sbjct: 8 RVAP-TITGNLENQ-TTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK--DGN 63
Query: 136 VRLTLKRATDDENGTYFIVARNIYGSDR--AFVTV 168
LT++R ++ G Y A ++ G + AF +
Sbjct: 64 RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII 98
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 61.6 bits (150), Expect = 2e-13
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 70 SSGAVKHEKPAMFLTRP-DTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTM 128
SSG+ E F + D +V G+D + G+P P++TW+ + I + T
Sbjct: 2 SSGSSGMEVAPSFSSVLKDC--AVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC 59
Query: 129 TETVNDYVRLTLKRATDDENGTYFIVARNIYGSDR--AFVTV 168
L ++ A +++GTY +A N G A+VTV
Sbjct: 60 E---AGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 60.0 bits (146), Expect = 9e-13
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 5/64 (7%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P + WL P+ + + + L + E+ G YTC N G A
Sbjct: 40 VPRITWLLNGQPIQYARSTCE-----AGVAELHIQDALPEDHGTYTCLAENALGQVSCSA 94
Query: 63 RVDV 66
V V
Sbjct: 95 WVTV 98
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 63.4 bits (154), Expect = 3e-13
Identities = 20/166 (12%), Positives = 49/166 (29%), Gaps = 29/166 (17%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
K ++ R K +K ++ TL + + ++ Y + + G
Sbjct: 41 KKKIAQFRKEKETFKEKDTYKLFKNG----TLKIKHLKTDDQDIYKVSIYDTKGKNVLEK 96
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
D+ + + KP + T + + + + P++ + K +
Sbjct: 97 IFDL-KI---QERVSKPKISWT----------CINTTLTCEVMNGTDPELNLYQDGKHLK 142
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
S R+ + T + + A N + + V
Sbjct: 143 LSQ-----------RVITHKWTTSLSAKFKCTAGNKVSKESSVEPV 177
Score = 40.3 bits (94), Expect = 8e-05
Identities = 10/64 (15%), Positives = 17/64 (26%), Gaps = 13/64 (20%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
PE+ + L S +I T + K+ C N+ +
Sbjct: 129 DPELNLYQDGKHLKLSQ-------------RVITHKWTTSLSAKFKCTAGNKVSKESSVE 175
Query: 63 RVDV 66
V
Sbjct: 176 PVSC 179
Score = 31.4 bits (71), Expect = 0.079
Identities = 12/87 (13%), Positives = 22/87 (25%), Gaps = 11/87 (12%)
Query: 93 ALGEDISFS--FRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVR---------LTLK 141
ALG+DI+ + W K + + L +K
Sbjct: 12 ALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIK 71
Query: 142 RATDDENGTYFIVARNIYGSDRAFVTV 168
D+ Y + + G +
Sbjct: 72 HLKTDDQDIYKVSIYDTKGKNVLEKIF 98
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 60.9 bits (148), Expect = 5e-13
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P + WL+ P PR E TL + + + G YTC ++ G T A
Sbjct: 37 LPVISWLKEGFTFPGRDPRATIQEQG----TLQIKNLRISDTGTYTCVATSSSGETSWSA 92
Query: 63 RVDVI 67
+DV
Sbjct: 93 VLDVT 97
Score = 48.2 bits (115), Expect = 3e-08
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 4/93 (4%)
Query: 76 HEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDY 135
P + L P ++A+ + G P P ++W+K T+ +
Sbjct: 6 SGPP-IILQGP-ANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRA--TIQEQ 61
Query: 136 VRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
L +K + GTY VA + G +
Sbjct: 62 GTLQIKNLRISDTGTYTCVATSSSGETSWSAVL 94
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 62.7 bits (152), Expect = 6e-13
Identities = 28/173 (16%), Positives = 50/173 (28%), Gaps = 31/173 (17%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
WL+G L ED+ + ++ G+Y+C E T A
Sbjct: 30 TGHRWLKGGVVLK---------EDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGT---AN 77
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKP-KVTWMKGIKDI- 121
+ + P + + GE + P W K
Sbjct: 78 IQL----------HGPPRVKAVKSS-EHINEGETAMLVCKSESVPPVTDWAWYKITDSED 126
Query: 122 -----TTSSRTMTETVNDYVRLTLKRATDDEN-GTYFIVARNIYGSDRAFVTV 168
+ SR + L ++ + + G Y + GSD+A +T+
Sbjct: 127 KALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITL 179
Score = 46.2 bits (109), Expect = 5e-07
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 7/69 (10%)
Query: 4 PEVIWLRGNT-----PLPKSSPRFKYIEDSNNLHTLILSGVTAEE-AGKYTCRVSNEYGY 57
+ W + + S RF + S L + + E G+Y C ++ G
Sbjct: 114 TDWAWYKITDSEDKALMNGSESRFF-VSSSQGRSELHIENLNMEADPGQYRCNGTSSKGS 172
Query: 58 TETFARVDV 66
+ + V
Sbjct: 173 DQAIITLRV 181
Score = 35.8 bits (82), Expect = 0.003
Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 9/68 (13%)
Query: 92 VALGEDISFSFRLAGSPKPKV--TWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENG 149
LG I + L S W+KG + E + K +DD+ G
Sbjct: 10 EDLGSKILLTCSLNDSATEVTGHRWLKG-------GVVLKEDALPGQKTEFKVDSDDQWG 62
Query: 150 TYFIVARN 157
Y V
Sbjct: 63 EYSCVFLP 70
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted
in U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 60.9 bits (148), Expect = 6e-13
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P ++W + + R K +E+ L + + G+YTC S G A
Sbjct: 37 VPTILWRKDGVLVSTQDSRIKQLENG----VLQIRYAKLGDTGRYTCIASTPSGEATWSA 92
Query: 63 RVDV 66
++V
Sbjct: 93 YIEV 96
Score = 52.1 bits (125), Expect = 2e-09
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 3/97 (3%)
Query: 72 GAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTET 131
G+ P + P +VA+ S GSP P + W K ++T + +
Sbjct: 1 GSSGSSGPPVIRQGP-VNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQL 59
Query: 132 VNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
N L ++ A + G Y +A G +
Sbjct: 60 ENG--VLQIRYAKLGDTGRYTCIASTPSGEATWSAYI 94
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 60.4 bits (146), Expect = 9e-13
Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 13/104 (12%)
Query: 77 EKPAMFLTRPDTMMSVALGEDISFSFRLAGSP---KPKVTWMKGI---------KDITTS 124
+ +F+ RP V +G I+FS R+AG+ P V W KG + +
Sbjct: 2 DPIGLFVMRPQDG-EVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLH 60
Query: 125 SRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ L + A G+Y D + +
Sbjct: 61 DSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNL 104
Score = 51.9 bits (124), Expect = 1e-09
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 7/71 (9%)
Query: 3 KPEVIWLRGNT--PLPKSSPRFKYIEDSNN-----LHTLILSGVTAEEAGKYTCRVSNEY 55
P V W +G K + + + L L ++ G Y C VS +
Sbjct: 36 PPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKD 95
Query: 56 GYTETFARVDV 66
+ + + V
Sbjct: 96 KFDCSNFNLTV 106
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 63.2 bits (153), Expect = 1e-12
Identities = 22/171 (12%), Positives = 47/171 (27%), Gaps = 24/171 (14%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+ V + D + I E Y C+ + ++ A
Sbjct: 123 QLVVTLHEKKGDVALP-----VPYDHQRGFSGI------FEDRSYICKTTIGDREVDSDA 171
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
++ + + T V GE+I+ + G+ W K+
Sbjct: 172 YYVYR------LQVSSINVSVNAVQT--VVRQGENITLMCIVIGNEVVNFEWTYPRKESG 223
Query: 123 TSSRTMTETVNDYVR-----LTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+T+ + D L + A +++GTY + +
Sbjct: 224 RLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAI 274
Score = 59.3 bits (143), Expect = 3e-11
Identities = 24/162 (14%), Positives = 47/162 (29%), Gaps = 19/162 (11%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
V+W R + P+ + +D L L+ +T + G+Y C ++ G +
Sbjct: 26 APVVWERMSQEPPQEMAK---AQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERK 82
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFR-LAGSPKPKVTWMKGIKDIT 122
I V + FL + + L E + P+ VT + D+
Sbjct: 83 RLYIFVP------DPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQLVVTLHEKKGDVA 136
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRA 164
+ E+ +Y +
Sbjct: 137 LPVPY---------DHQRGFSGIFEDRSYICKTTIGDREVDS 169
Score = 46.2 bits (109), Expect = 1e-06
Identities = 9/68 (13%), Positives = 18/68 (26%), Gaps = 3/68 (4%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLH---TLILSGVTAEEAGKYTCRVSNEYGYTE 59
W + H L + E++G YTC V+ +
Sbjct: 210 VVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQ 269
Query: 60 TFARVDVI 67
+++
Sbjct: 270 DEKAINIT 277
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 59.7 bits (145), Expect = 2e-12
Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 14/84 (16%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
V W TPL ++ + H L L + +++G G A
Sbjct: 42 YEPVHWFLDKTPL-HANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASA 96
Query: 63 RVDVINVSSGAVKHEKPAMFLTRP 86
+ V EKP++F
Sbjct: 97 ALRV---------TEKPSVFSRSG 111
Score = 55.5 bits (134), Expect = 6e-11
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 4/94 (4%)
Query: 76 HEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSR-TMTETVND 134
+ + + + V G +F R++ + V W + + +
Sbjct: 10 QGRRVHIIEDLEDV-DVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGG 68
Query: 135 YVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
Y LTL++ ++GT + A + S A + V
Sbjct: 69 YHVLTLRQLALKDSGTIYFEAGDQRAS--AALRV 100
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 59.6 bits (144), Expect = 3e-12
Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 13/106 (12%)
Query: 75 KHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSP---KPKVTWMKGI---------KDIT 122
+F+ +P +V +GEDI+F ++ KP + W KG K +
Sbjct: 3 SGSSGILFIEKPQGG-TVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQ 61
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ + + +A D+ G Y D +
Sbjct: 62 LKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDL 107
Score = 51.5 bits (123), Expect = 3e-09
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
Query: 3 KPEVIWLRGNTPLPKSSP----RFKYIEDSNN---LHTLILSGVTAEEAGKYTCRVSNEY 55
KP + W +G S + K + ++ + + AG Y C V+ +
Sbjct: 39 KPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKD 98
Query: 56 GYTETFARVDVI 67
+ ++V
Sbjct: 99 KFDSCSFDLEVH 110
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 59.1 bits (143), Expect = 3e-12
Identities = 13/68 (19%), Positives = 18/68 (26%), Gaps = 4/68 (5%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLH---TLILSGVTAEEAGKYTCRVSNEYGYTE 59
P + WL PL + S L+ + T G YT N G
Sbjct: 34 PPTLHWLHNGQPL-RESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTAN 92
Query: 60 TFARVDVI 67
+
Sbjct: 93 QTINGHFL 100
Score = 57.1 bits (138), Expect = 2e-11
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Query: 94 LGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVR----LTLKRATDDENG 149
L + F + G+P P + W+ + + S E + L + T NG
Sbjct: 19 LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNG 78
Query: 150 TYFIVARNIYGSDRAFVTV 168
Y ++A+N G+ +
Sbjct: 79 NYTLIAKNPLGTANQTING 97
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 60.3 bits (145), Expect = 5e-12
Identities = 19/175 (10%), Positives = 45/175 (25%), Gaps = 23/175 (13%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYG-----Y 57
+ W + + + + L + G Y C+ S Y
Sbjct: 29 AKNITWFKDGKMIG---------FLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVY 79
Query: 58 TETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGS---------P 108
+ D ++ +K D + + ++G+ P
Sbjct: 80 YRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQYP 139
Query: 109 KPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDR 163
++ W K+I ++ + + +++G Y R D
Sbjct: 140 GSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDA 194
Score = 50.7 bits (120), Expect = 2e-08
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 7/67 (10%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF- 61
E++W + + D ++L + E++G Y C F
Sbjct: 140 GSEILWQHNDKNIGGDEDDKNIGSDEDHL--SLKEFSELEQSGYYVCYPRGSKPEDANFY 197
Query: 62 ----ARV 64
ARV
Sbjct: 198 LYLRARV 204
Score = 33.7 bits (76), Expect = 0.015
Identities = 9/57 (15%), Positives = 13/57 (22%), Gaps = 7/57 (12%)
Query: 106 GSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSD 162
+ +TW K K I + + L D G Y
Sbjct: 26 DAEAKNITWFKDGKMIGFLTEDKK-------KWNLGSNAKDPRGMYQCKGSQNKSKP 75
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 58.2 bits (141), Expect = 5e-12
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 9/75 (12%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
K W + + + S R I H L++ V E+ G YT A
Sbjct: 36 KVTGKWYKNGVEV-RPSKRIT-ISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLS--A 91
Query: 63 RVDVINV-----SSG 72
+++ + + SSG
Sbjct: 92 KLNFLEIKVSGPSSG 106
Score = 53.5 bits (129), Expect = 3e-10
Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 2/97 (2%)
Query: 72 GAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTET 131
G+ L + +V E F ++ K W K ++ S R
Sbjct: 1 GSSGSSGQLEVLQDIADL-TVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISH 58
Query: 132 VNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
V + +L + ++ G Y V S A +
Sbjct: 59 VGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNF 95
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 57.8 bits (140), Expect = 8e-12
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
EV WL+ + S ++ E TL +S + + Y C V E +
Sbjct: 44 DAEVKWLKNGQEIQMSGSKYI-FESIGAKRTLTISQCSLADDAAYQCVVGGE----KCST 98
Query: 63 RVDV 66
+ V
Sbjct: 99 ELFV 102
Score = 52.4 bits (126), Expect = 8e-10
Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 4/100 (4%)
Query: 70 SSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSS-RTM 128
++ +K F + + V+ G I + LA +V W+K ++I S + +
Sbjct: 6 HHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYI 64
Query: 129 TETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
E++ LT+ + + ++ Y V S + V
Sbjct: 65 FESIGAKRTLTISQCSLADDAAYQCVVGGEKCS--TELFV 102
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 61.2 bits (147), Expect = 8e-12
Identities = 18/180 (10%), Positives = 46/180 (25%), Gaps = 27/180 (15%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIED-SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
+V+ P R + +++++G+ E+AG+Y C ++ E
Sbjct: 260 NCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGS 319
Query: 62 ARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTW------- 114
+ R T++ G ++ + +
Sbjct: 320 PIQAW-------QLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGA 372
Query: 115 -MKGIKDITTSSRTMTETVNDYVR-----------LTLKRATDDENGTYFIVARNIYGSD 162
+ S + + + L + T + G Y+ +
Sbjct: 373 QNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWR 432
Score = 57.3 bits (137), Expect = 2e-10
Identities = 17/163 (10%), Positives = 42/163 (25%), Gaps = 5/163 (3%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+ P R L +++++ + +AG+Y C+ ++ + A
Sbjct: 156 VLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNA 215
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
+ V+ + + + F R + V K
Sbjct: 216 DLQVLKPEP--ELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAP 273
Query: 123 TSSRTMTETVND---YVRLTLKRATDDENGTYFIVARNIYGSD 162
+ D + + ++ G Y A +
Sbjct: 274 AFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQ 316
Score = 48.8 bits (115), Expect = 2e-07
Identities = 19/183 (10%), Positives = 48/183 (26%), Gaps = 29/183 (15%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIED-SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
+ K + R N + ++ ++ +++G+Y C +
Sbjct: 45 GCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSR----- 99
Query: 62 ARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWM-----K 116
+S L + +V LG ++ + K +
Sbjct: 100 ------GLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGL 153
Query: 117 GIKDITTSSRTMTETVNDYVR------------LTLKRATDDENGTYFIVARNIYGSDRA 164
+ SS + +R + + + + G Y A + S++
Sbjct: 154 YPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKK 213
Query: 165 FVT 167
Sbjct: 214 NAD 216
Score = 48.5 bits (114), Expect = 3e-07
Identities = 31/178 (17%), Positives = 54/178 (30%), Gaps = 26/178 (14%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLH-TLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P ++ G R +E+ N T+IL+ +T+ +AG Y C + + + T
Sbjct: 378 PLLVDSEGWVKAQYEG-RLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVE 436
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLA----GSPKPKVTWMKGI 118
+ ++ LGE + K W
Sbjct: 437 I------------KIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTG 484
Query: 119 KDITTSSRT-------MTETVNDYVRLTLKRATDDENGTYF-IVARNIYGSDRAFVTV 168
S + + V LTL T + G Y+ V + + + A V V
Sbjct: 485 CQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYV 542
Score = 47.3 bits (111), Expect = 5e-07
Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 6/93 (6%)
Query: 1 YVKPEVIWLRGNTPLPKS-----SPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEY 55
Y K W S S F ++++ L +L L+ VT + G Y C V +
Sbjct: 473 YEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGH 532
Query: 56 GYTETFA-RVDVINVSSGAVKHEKPAMFLTRPD 87
Y ET A V V + + A PD
Sbjct: 533 FYGETAAVYVAVEERKAAGSRDVSLAKADAAPD 565
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 59.2 bits (143), Expect = 1e-11
Identities = 21/170 (12%), Positives = 52/170 (30%), Gaps = 30/170 (17%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLH-----TLILSGVTAEEAGKYTCRVSNEYGYT 58
EV W RG+T + + + K S L + +T +++G Y V + G
Sbjct: 28 DEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTR 87
Query: 59 ETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGI 118
+D+ + +++P + + + + ++ +G
Sbjct: 88 ILNKALDL-----------RILEMVSKPMIYWE---CSNATLTCEVLEGTDVELKLYQGK 133
Query: 119 KDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ + + + T+ + + A N + V
Sbjct: 134 EHLRSLR-----------QKTMSYQWTNLRAPFKCKAVNRVSQESEMEVV 172
Score = 34.2 bits (78), Expect = 0.008
Identities = 6/54 (11%), Positives = 11/54 (20%), Gaps = 13/54 (24%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYG 56
E+ +G L +S + C+ N
Sbjct: 124 DVELKLYQGKEHLRSL-------------RQKTMSYQWTNLRAPFKCKAVNRVS 164
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 56.9 bits (138), Expect = 1e-11
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
W PL +SP + IED H LIL G+ + + +N ++ A
Sbjct: 33 DVHGQWKLKGQPL-AASPDCEIIED-GKKHILILHNCQLGMTGEVSFQAANT----KSAA 86
Query: 63 RVDV 66
+ V
Sbjct: 87 NLKV 90
Score = 48.1 bits (115), Expect = 3e-08
Identities = 15/79 (18%), Positives = 21/79 (26%), Gaps = 3/79 (3%)
Query: 90 MSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENG 149
+ V +GE F L P W + + S L L G
Sbjct: 15 VEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTG 73
Query: 150 TYFIVARNIYGSDRAFVTV 168
A N + A + V
Sbjct: 74 EVSFQAANTKSA--ANLKV 90
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 57.6 bits (139), Expect = 1e-11
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 7/80 (8%)
Query: 96 EDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVR-------LTLKRATDDEN 148
F + G P P + W+ + +S TE + L L + T N
Sbjct: 16 HHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNN 75
Query: 149 GTYFIVARNIYGSDRAFVTV 168
G Y ++A N +G A +
Sbjct: 76 GNYTLLAANPFGQASASIMA 95
Score = 55.3 bits (133), Expect = 1e-10
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHT-----LILSGVTAEEAGKYTCRVSNEYGY 57
P + WL + L ++S F + T L L+ T G YT +N +G
Sbjct: 29 APSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ 88
Query: 58 TETFARVDVI 67
+
Sbjct: 89 ASASIMAAFM 98
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 57.8 bits (139), Expect = 2e-11
Identities = 27/126 (21%), Positives = 42/126 (33%), Gaps = 32/126 (25%)
Query: 75 KHEKPAMFLTRPDTM---MSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT--------- 122
+ E P + L P + + V G + ++G P P V W K I
Sbjct: 10 RQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPD 69
Query: 123 --------------------TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSD 162
T R ET D T++ A ++ G Y + +N G D
Sbjct: 70 APEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGED 129
Query: 163 RAFVTV 168
+ +TV
Sbjct: 130 QVNLTV 135
Score = 48.2 bits (114), Expect = 6e-08
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
W+ L ++ R + +E + + + G E+ G YT V N G +
Sbjct: 75 GDSDEWVFDKKLLCETEGRVR-VETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNL 133
Query: 63 RVDVI 67
V VI
Sbjct: 134 TVKVI 138
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 59.0 bits (142), Expect = 2e-11
Identities = 23/173 (13%), Positives = 48/173 (27%), Gaps = 23/173 (13%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P W SP + + TL ++ V+ Y C + E E
Sbjct: 30 SPFFSWRTQI-----DSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGI 84
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGS---PKPKVTWMKGIK 119
+V++ + H + G+ I+ +A + ++ +KG
Sbjct: 85 QVEIYSFPKDPEIHLSG-----------PLEAGKPITVKCSVADVYPFDRLEIDLLKGDH 133
Query: 120 DITTSSRTMTETVNDY----VRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ + + +T +D A+ + TV
Sbjct: 134 LMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTV 186
Score = 42.5 bits (99), Expect = 2e-05
Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 3/85 (3%)
Query: 84 TRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRA 143
T P++ +G+ +S + G P +W I + LT+
Sbjct: 5 TTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQID---SPLNGKVTNEGTTSTLTMNPV 61
Query: 144 TDDENGTYFIVARNIYGSDRAFVTV 168
+ +Y A + V
Sbjct: 62 SFGNEHSYLCTATCESRKLEKGIQV 86
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 60.2 bits (146), Expect = 2e-11
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET 60
P V W + + L K S ++ + N + L ++ V ++ G+YT R N YG E
Sbjct: 509 SSPPVVTWHKDDREL-KQSVKYM-KRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEE 566
Query: 61 FARVDV 66
++V
Sbjct: 567 IVFLNV 572
Score = 59.8 bits (145), Expect = 3e-11
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 84 TRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRA 143
V G+ +F R+ S P VTW K +++ S + M + LT+ R
Sbjct: 486 IVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRV 545
Query: 144 TDDENGTYFIVARNIYGSD--RAFVTV 168
D+ G Y + A+N YG+ F+ V
Sbjct: 546 KGDDKGEYTVRAKNSYGTKEEIVFLNV 572
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 59.8 bits (144), Expect = 2e-11
Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 29/166 (17%)
Query: 6 VIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVD 65
W + + P NN TL ++ T+E AG Y V + T + V
Sbjct: 38 YTWTKDDQPH------------ENNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVF 85
Query: 66 VINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRL---AGSPKPKVTWMKGIKDIT 122
+ ++ + + +T P V+ D+ + G +
Sbjct: 86 L-------MEEAELIVNITEPQH-FYVSSQTDVELHATVKFSGGKTPADNYE------LH 131
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
S + ++ +T++ T D+NG Y + A +
Sbjct: 132 YSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGESEDSAASAST 177
Score = 53.7 bits (128), Expect = 3e-09
Identities = 29/179 (16%), Positives = 57/179 (31%), Gaps = 40/179 (22%)
Query: 8 WLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVI 67
W +G + + + + TA++ G YT +V E + A +
Sbjct: 134 WSKGEDVI-------------DTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKI- 179
Query: 68 NVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLA--------GSPKPKVTW----- 114
+VALG +IS ++ ++ G P + +
Sbjct: 180 --------MLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQ 231
Query: 115 MKGIKDITTSSRTMTETVNDYV-----RLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+G T + E + + L + AT D+ ++ VA+ + V V
Sbjct: 232 REGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEV 290
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 59.9 bits (144), Expect = 2e-11
Identities = 22/167 (13%), Positives = 42/167 (25%), Gaps = 32/167 (19%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+ +V L+L + ++C + E
Sbjct: 310 RAKVTLNGVPAQPLGPRA------------QLLLKATPEDNGRSFSCSATLEVAGQLIHK 357
Query: 63 RVDV-INVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDI 121
+ V P + + + + G+P P++ +K
Sbjct: 358 NQTRELRV------LYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 411
Query: 122 TTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
++T T + GTY AR+ G VTV
Sbjct: 412 LPIGESVTVTRDL-------------EGTYLCRARSTQGEVTREVTV 445
Score = 48.3 bits (114), Expect = 2e-07
Identities = 27/166 (16%), Positives = 48/166 (28%), Gaps = 26/166 (15%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+ +V G+ L +P Y DS + + E + TC V ET
Sbjct: 220 EAQVHLALGDQRL---NPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQ 276
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDIT 122
V + + PA + +S E + + P+ KVT
Sbjct: 277 TVTI---------YSFPAPNVILTKPEVS----EGTEVTVKCEAHPRAKVTL-------- 315
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ + + +L LK +D ++ A
Sbjct: 316 --NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQ 359
Score = 44.5 bits (104), Expect = 4e-06
Identities = 18/168 (10%), Positives = 43/168 (25%), Gaps = 24/168 (14%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
P ++ + TPLPK + + +E + C + G +
Sbjct: 28 PMLLGIE--TPLPKKELL------LPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTF 79
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGS---PKPKVTWMKGIKD 120
+ V + +G++++ ++ G V ++G K+
Sbjct: 80 LTVYW----------TPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKE 129
Query: 121 ITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ V T+ D + +
Sbjct: 130 LKREP---AVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFE 174
Score = 40.2 bits (93), Expect = 1e-04
Identities = 16/65 (24%), Positives = 21/65 (32%), Gaps = 17/65 (26%)
Query: 3 KPEVIWLR-GNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
PE+ L+ G PLP VT + G Y CR + G
Sbjct: 399 LPELKCLKDGTFPLPIGESVT----------------VTRDLEGTYLCRARSTQGEVTRE 442
Query: 62 ARVDV 66
V+V
Sbjct: 443 VTVNV 447
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 56.6 bits (137), Expect = 2e-11
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
W + P+ + S R K + +H L+++ E+ G Y A
Sbjct: 34 NIPGKWTKNGLPV-QESDRLK-VVQKGRIHKLVIANALTEDEGDYVFAPDA--YNVTLPA 89
Query: 63 RVDVINV-SSG 72
+V VI+ SSG
Sbjct: 90 KVHVISGPSSG 100
Score = 50.0 bits (120), Expect = 5e-09
Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 3/92 (3%)
Query: 77 EKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYV 136
LT +V LG++I + S W K + S R
Sbjct: 5 SSGLKILTPLTDQ-TVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIH 61
Query: 137 RLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+L + A ++ G Y + A V V
Sbjct: 62 KLVIANALTEDEGDYVFAPDAYNVTLPAKVHV 93
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 59.0 bits (142), Expect = 2e-11
Identities = 19/175 (10%), Positives = 44/175 (25%), Gaps = 19/175 (10%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
V + DS + AG C ++
Sbjct: 38 LNVSLCARYPEKRFVPDGNRISWDSK--KGFTIPSYMISYAGMVFCEAKINDESYQSIMY 95
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWM-----KGI 118
+ V V + + P + +++GE + + + +
Sbjct: 96 IVV-------VVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKH 148
Query: 119 KDITTSSRTMTETVNDYVR-----LTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ +R + ++ LT+ T + G Y A + + + V
Sbjct: 149 QHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFV 203
Score = 45.2 bits (106), Expect = 2e-06
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 15/84 (17%)
Query: 2 VKPEVIWLRGNTPLPKSSPRFKYIEDSNNLH------TLILSGVTAEEAGKYTCRVSNEY 55
V + W ++ + ++ + TL + GVT + G YTC S+
Sbjct: 135 VGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 194
Query: 56 GYTETFARVDVINVSSGAVKHEKP 79
+ V V HE P
Sbjct: 195 MTKKNSTFVRV---------HEDP 209
Score = 32.5 bits (73), Expect = 0.037
Identities = 6/90 (6%), Positives = 22/90 (24%), Gaps = 1/90 (1%)
Query: 79 PAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRL 138
++ ++ + + V+ + + +
Sbjct: 8 ASVSDQHGVVYITENKNKTVVIPCL-GSISNLNVSLCARYPEKRFVPDGNRISWDSKKGF 66
Query: 139 TLKRATDDENGTYFIVARNIYGSDRAFVTV 168
T+ G F A+ S ++ + +
Sbjct: 67 TIPSYMISYAGMVFCEAKINDESYQSIMYI 96
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 59.4 bits (143), Expect = 2e-11
Identities = 19/173 (10%), Positives = 46/173 (26%), Gaps = 17/173 (9%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
+ + + + F + I + A C + + +
Sbjct: 121 SQYSLIECDGKSLPTDLTFVP---NPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHS--- 174
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKP-KVTWMKGIKDIT 122
D + P + + + G+ + + W+K
Sbjct: 175 -DKFTLKVREAIKAIPVVSVPETSH--LLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQ 231
Query: 123 TSSRTMTETVNDYVR-------LTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
++ + + LT+ A D++G + A N +GS T+
Sbjct: 232 HIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTL 284
Score = 54.4 bits (130), Expect = 1e-09
Identities = 22/170 (12%), Positives = 38/170 (22%), Gaps = 27/170 (15%)
Query: 2 VKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
V W N + I A G YTC SN +
Sbjct: 36 DPDFVRWTFKTYFNEMVE---------NKKNEWIQEKAEATRTGTYTCSNSNGLTSS--- 83
Query: 62 ARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDI 121
V V + +FL + D L + + ++
Sbjct: 84 IYVFV---------RDPAKLFLVGLP--LFGKEDSDALVRCPLTDPQVSQYSLIECDGKS 132
Query: 122 TTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARN---IYGSDRAFVTV 168
+ T + + + A+ SD+ + V
Sbjct: 133 LPTDLTFVPNPKAGITIKNVKRAYHR-LCVRCAAQRDGTWLHSDKFTLKV 181
Score = 50.1 bits (119), Expect = 5e-08
Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLH-----TLILSGVTAEEAGKYTCRVSNEYGYT 58
+WL+ N + + + TL +S +++G + C +N +G
Sbjct: 219 VNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSA 278
Query: 59 ETFARVDVI 67
+ V+
Sbjct: 279 NVTTTLKVV 287
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 57.9 bits (140), Expect = 3e-11
Identities = 25/167 (14%), Positives = 42/167 (25%), Gaps = 38/167 (22%)
Query: 6 VIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVD 65
+ W +P + ++G+YTC+ +
Sbjct: 37 IQWFHNGNLIPTHT------------QPSYRFKANNNDSGEYTCQTGQ--TSLSDPVHLT 82
Query: 66 VINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFS-FRLAGSPKPKVTWMKGIKDITTS 124
V + + T GE I P KVT+ + K S
Sbjct: 83 V---------LFEWLVLQTPHLE---FQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFS 130
Query: 125 SRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG---SDRAFVTV 168
T ++ +A +G Y Y S +TV
Sbjct: 131 HLDPT--------FSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
Score = 39.8 bits (93), Expect = 9e-05
Identities = 7/53 (13%), Positives = 15/53 (28%), Gaps = 10/53 (18%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYG 56
+V + + + S+ T + +G Y C + Y
Sbjct: 116 VKVTFFQNGKSQ----------KFSHLDPTFSIPQANHSHSGDYHCTGNIGYT 158
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 58.9 bits (142), Expect = 3e-11
Identities = 23/140 (16%), Positives = 44/140 (31%), Gaps = 17/140 (12%)
Query: 33 TLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSV 92
L ++ V ++AG Y C +S G V V ++
Sbjct: 81 ALQITDVKLQDAGVYRCMISYG-GADYKRITVKV-----------NAPYNKINQRILVVD 128
Query: 93 ALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVND----YVRLTLKRATDDEN 148
+ + + + G PK +V W + + T T + + V TL R N
Sbjct: 129 PVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTL-RINTTTN 187
Query: 149 GTYFIVARNIYGSDRAFVTV 168
++ R + + +
Sbjct: 188 EIFYCTFRRLDPEENHTAEL 207
Score = 40.8 bits (95), Expect = 7e-05
Identities = 9/67 (13%), Positives = 18/67 (26%), Gaps = 1/67 (1%)
Query: 1 YVKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILS-GVTAEEAGKYTCRVSNEYGYTE 59
Y K EVIW + + + L + + + + C
Sbjct: 143 YPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEEN 202
Query: 60 TFARVDV 66
A + +
Sbjct: 203 HTAELVI 209
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 58.3 bits (141), Expect = 3e-11
Identities = 29/174 (16%), Positives = 45/174 (25%), Gaps = 39/174 (22%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+ W R LP S+ I ++ + L ++ + + G Y C N G
Sbjct: 47 SATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEF 106
Query: 63 RVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRL----AGSP---------- 108
+ + P+ P F G P
Sbjct: 107 ILVQA---------DTPSS----PSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRA 153
Query: 109 KPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTY-FIV-ARNIYG 160
+ W D +S T+ LK T TY + A N G
Sbjct: 154 VGEEVWHSKWYDAKEASMEGIVTIVG-----LKPET-----TYAVRLAALNGKG 197
Score = 58.3 bits (141), Expect = 3e-11
Identities = 12/103 (11%), Positives = 35/103 (33%), Gaps = 4/103 (3%)
Query: 68 NVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRT 127
+ H + + G ++ + + P ++W + + + +S+ +
Sbjct: 8 SALVPRGSHMYAPKL--QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYS 65
Query: 128 MTETVNDYVR--LTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ N L + ++++ G Y A N G + +
Sbjct: 66 NIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFIL 108
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 56.2 bits (136), Expect = 3e-11
Identities = 24/98 (24%), Positives = 32/98 (32%), Gaps = 5/98 (5%)
Query: 70 SSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLA-GSPKPKVTWMKGIKDITTSSRTM 128
SSG+ R TM V GE SF L+ S W G K + +SSR
Sbjct: 2 SSGS---SGHVGITKRLKTM-EVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQ 57
Query: 129 TETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFV 166
L ++ A + G R + V
Sbjct: 58 ATRQGRKYILVVREAAPSDAGEVVFSVRGLTSKASLIV 95
Score = 52.0 bits (125), Expect = 1e-09
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 2 VKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
+W G + SS RF+ + L++ +AG+ V +
Sbjct: 37 ASDPAMWTVGGKTV-GSSSRFQ-ATRQGRKYILVVREAAPSDAGEVVFSVRGL----TSK 90
Query: 62 ARVDV 66
A + V
Sbjct: 91 ASLIV 95
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 55.8 bits (135), Expect = 4e-11
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
V WL+ + + S ++ + + + L++ G + ++AG+YTC V
Sbjct: 37 TPVHWLKDRKAI-RKSQKYDVVCE-GTMAMLVIRGASLKDAGEYTCEVEASKSTASLHVE 94
Query: 64 VDVINVSSG 72
SSG
Sbjct: 95 EKASGPSSG 103
Score = 54.2 bits (131), Expect = 2e-10
Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 5/99 (5%)
Query: 70 SSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMT 129
SSG+ PA + + VA GED+ L+ + P V W+K K I S +
Sbjct: 2 SSGS---SGPAAIIKPLEDQ-WVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDV 56
Query: 130 ETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
L ++ A+ + G Y + V
Sbjct: 57 VCEGTMAMLVIRGASLKDAGEYTCEVEASKSTASLHVEE 95
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 58.5 bits (141), Expect = 5e-11
Identities = 25/168 (14%), Positives = 40/168 (23%), Gaps = 30/168 (17%)
Query: 2 VKPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
P P PR L+L + ++C + E
Sbjct: 122 AHPRAKVTLNGVPAQPLGPR----------AQLLLKATPEDNGRSFSCSATLEVAGQLIH 171
Query: 62 ARVDV-INVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKD 120
+ V P + + + + G+P P++ +K
Sbjct: 172 KNQTRELRV------LYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTF 225
Query: 121 ITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
T D GTY AR+ G VTV
Sbjct: 226 PLPIGE-------------SVTVTRDLEGTYLCRARSTQGEVTREVTV 260
Score = 49.7 bits (118), Expect = 7e-08
Identities = 29/159 (18%), Positives = 48/159 (30%), Gaps = 26/159 (16%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
+V G+ L +P Y DS + + E + TC V ET
Sbjct: 36 AQVHLALGDQRL---NPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQT 92
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITT 123
V + + PA + V+ G +++ P+ KVT G+
Sbjct: 93 VTI---------YSFPAPNVILTKP--EVSEGTEVTVK--CEAHPRAKVTL-NGVPAQPL 138
Query: 124 SSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSD 162
R +L LK +D ++ A
Sbjct: 139 GPR---------AQLLLKATPEDNGRSFSCSATLEVAGQ 168
Score = 40.8 bits (95), Expect = 7e-05
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 15/64 (23%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
PE+ L+ + + L VT + G Y CR + G
Sbjct: 214 LPELKCLK---------------DGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREV 258
Query: 63 RVDV 66
V+V
Sbjct: 259 TVNV 262
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 55.5 bits (134), Expect = 6e-11
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
+ WLR L S R + + + + ++G Y C S+ G T+
Sbjct: 32 QSINWLRDGVQLA-ESNRTRITGE-----EVEVQDSVPADSGLYACVTSSPSGSDTTYFS 85
Query: 64 VDVINVSS 71
V+V +
Sbjct: 86 VNVSDALP 93
Score = 50.9 bits (122), Expect = 3e-09
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 90 MSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENG 149
V G+ + RL + W++ + S+RT + ++ + ++G
Sbjct: 13 FLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRI----TGEEVEVQDSVPADSG 67
Query: 150 TYFIVARNIYGSDRAFVTV 168
Y V + GSD + +V
Sbjct: 68 LYACVTSSPSGSDTTYFSV 86
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 55.6 bits (133), Expect = 6e-11
Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 13/104 (12%)
Query: 77 EKPAMFLTRPDTMMSVALGEDISFSFRLAGSP---KPKVTWMKG----IKDITTSSRTMT 129
E +FL +PD++ SV G+D ++ G KP + W KG + + + +
Sbjct: 10 EPTGVFLKKPDSV-SVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFK 68
Query: 130 ETVNDYVR-----LTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
E+ N L + + + G Y + + D +
Sbjct: 69 ESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNI 112
Score = 44.0 bits (103), Expect = 2e-06
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 3 KPEVIWLRGNTP--LPKSSPRFKY---IEDSNNLHT--LILSGVTAEEAGKYTCRVSNEY 55
KP + W +G KS RF + ++N++T L + V + G Y V +
Sbjct: 44 KPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKD 103
Query: 56 GYTETFARVDV 66
+DV
Sbjct: 104 TCDSCGFNIDV 114
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 55.1 bits (133), Expect = 8e-11
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
K EV W + + + S ++ E L ++ + +Y +E +
Sbjct: 36 KLEVKWYKNGQEI-RPSTKYI-FEHKGCQRILFINNCQMTDDSEYYVTAGDE----KCST 89
Query: 63 RVDV 66
+ V
Sbjct: 90 ELFV 93
Score = 53.9 bits (130), Expect = 2e-10
Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 3/93 (3%)
Query: 76 HEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDY 135
A F D V G + F L PK +V W K ++I S++ + E
Sbjct: 4 GSSGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQ 62
Query: 136 VRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
L + ++ Y++ A + S + V
Sbjct: 63 RILFINNCQMTDDSEYYVTAGDEKCS--TELFV 93
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 55.0 bits (133), Expect = 9e-11
Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
V W +G L ++S + + ++ L +S + ++ YTC + G ++ A
Sbjct: 36 AATVTWRKGLLEL-RASGKHQPSQE-GLTLRLTISALEKADSDTYTCDI----GQAQSRA 89
Query: 63 RVDV 66
++ V
Sbjct: 90 QLLV 93
Score = 51.6 bits (124), Expect = 2e-09
Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 4/97 (4%)
Query: 72 GAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTET 131
G+ F + V F+ + P VTW KG+ ++ S +
Sbjct: 1 GSSGSSGANCFTEELTNL-QVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQ 58
Query: 132 VNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+RLT+ ++ TY A + V
Sbjct: 59 EGLTLRLTISALEKADSDTYTCDIGQAQSR--AQLLV 93
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 54.7 bits (132), Expect = 1e-10
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
+V W RG + + +S ++ + HTL + V + G Y G ++
Sbjct: 37 VKVRWQRGGSDI-SASNKYG-LATEGTRHTLTVREVGPADQGSYAVIA----GSSKVKFD 90
Query: 64 VDVI 67
+ VI
Sbjct: 91 LKVI 94
Score = 51.2 bits (123), Expect = 2e-09
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 77 EKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYV 136
+ + F +P ++ VA G F KV W +G DI+ S++ T
Sbjct: 6 KPVSAFSKKPRSV-EVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRH 63
Query: 137 RLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
LT++ + G+Y ++A + + V
Sbjct: 64 TLTVREVGPADQGSYAVIAGSSKVK--FDLKV 93
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 57.2 bits (138), Expect = 1e-10
Identities = 22/168 (13%), Positives = 42/168 (25%), Gaps = 37/168 (22%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
W T S+P + ++ + ++G+Y C+
Sbjct: 32 SSTQWFLNGTATQTSTP------------SYRITSASVNDSGEYRCQRGLSGRSDPIQLE 79
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFS-FRLAGSPKPKVTWMKGIKDIT 122
+ + + L + GE ++ V + + K
Sbjct: 80 I------------HRGWLLLQVSSRV--FTEGEPLALRCHAWKDKLVYNVLYYRNGKAFK 125
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG--SDRAFVTV 168
LT+ + NGTY + S VTV
Sbjct: 126 FFHWNSN--------LTILKTNISHNGTYHCSGMGKHRYTSAGISVTV 165
Score = 55.7 bits (134), Expect = 4e-10
Identities = 22/170 (12%), Positives = 42/170 (24%), Gaps = 27/170 (15%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
V++ R L + G Y C ++ YT
Sbjct: 113 YNVLYYRNGKAFKFFHWN----------SNLTILKTNISHNGTYHCSGMGKHRYTSAGIS 162
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITT 123
V V P + + + G ++ S + +
Sbjct: 163 VTVK------ELFPAPVLNASVTSP---LLEGNLVTLSCETKLLLQRPGLQLYFSFY--M 211
Query: 124 SSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG-----SDRAFVTV 168
S+T+ + A +++G Y+ A G S + V
Sbjct: 212 GSKTLRGRNTSS-EYQILTARREDSGLYWCEAATEDGNVLKRSPELELQV 260
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 56.8 bits (136), Expect = 2e-10
Identities = 26/211 (12%), Positives = 50/211 (23%), Gaps = 59/211 (27%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIED------------------SNNLHTLILSGVTAEEA 44
V WL S Y + +N +L+L V +
Sbjct: 37 VDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADE 96
Query: 45 GKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRL 104
G YTC + + V++ + + V +G+ +
Sbjct: 97 GIYTCEIRLKNESMVMKKPVELWVL--------------PEEPRDLRVRVGDTTQMRCSI 142
Query: 105 AGSPKP---KVTWMKGIKDITTSSRTMTETVNDYVR------------------------ 137
+ + KV WM T ++ N
Sbjct: 143 QSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGS 202
Query: 138 LTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ L+ + + G Y R + +
Sbjct: 203 IKLQTVKESDQGIYTCSIYVGKLESRKTIVL 233
Score = 42.2 bits (98), Expect = 3e-05
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 33 TLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVI 67
++ L V + G YTC + + + V+
Sbjct: 202 SIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVV 236
Score = 33.3 bits (75), Expect = 0.028
Identities = 18/113 (15%), Positives = 29/113 (25%), Gaps = 25/113 (22%)
Query: 79 PAMFLTRPDTMMSVALGEDISFS---FRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDY 135
P + ++ P + V +GE + R +V W+ S + N
Sbjct: 6 PGLTVSSPQ--LRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLS 63
Query: 136 VR--------------------LTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
V L L+ + G Y R S V
Sbjct: 64 VPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPV 116
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 54.0 bits (130), Expect = 2e-10
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 76 HEKPAMFLTRPDTMMSVALGEDISFSFR-LAGSPKPKVTWMKGIKDITTSSRTMTETVND 134
KP M SV G D++F + SP + W + S +
Sbjct: 6 PSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGI-- 63
Query: 135 YVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
LT++ + GTY N++ D+ T+
Sbjct: 64 ---LTIRNVQPSDAGTYVCTGSNMFAMDQGTATL 94
Score = 46.0 bits (109), Expect = 2e-07
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 3 KPEVIWLR-GNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
++W R N LP + D N L + V +AG Y C SN + +
Sbjct: 40 AYTLVWTRLHNGKLPSRA------MDFN--GILTIRNVQPSDAGTYVCTGSNMFAMDQGT 91
Query: 62 ARVDV 66
A + V
Sbjct: 92 ATLHV 96
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 53.9 bits (130), Expect = 2e-10
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 3 KPEVIWLRGNTPL-PKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
V W + + P R++ + H LI+ G T +A +Y+ + ++
Sbjct: 35 DANVKWFKNGEEIIPGPKSRYRIRVE-GKKHILIIEGATKADAAEYSVMTTGG----QSS 89
Query: 62 ARVDV 66
A++ V
Sbjct: 90 AKLSV 94
Score = 45.8 bits (109), Expect = 3e-07
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 6/94 (6%)
Query: 77 EKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITT--SSRTMTETVND 134
M + + + GE + ++ V W K ++I SR
Sbjct: 5 SSGIMVTKQLEDT-TAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGK 62
Query: 135 YVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
L ++ AT + Y ++ G A ++V
Sbjct: 63 KHILIIEGATKADAAEYSVMTTG--GQSSAKLSV 94
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 54.0 bits (130), Expect = 2e-10
Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 4/100 (4%)
Query: 70 SSGAVKHEKPAMFL-TRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTM 128
SSG+ + + + ++ E + + L P +V W K +++ S +
Sbjct: 2 SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALL 60
Query: 129 TETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ + RL L +++G Y + S VTV
Sbjct: 61 LQKEDTVRRLVLPAVQLEDSGEYLCEIDDESAS--FTVTV 98
Score = 52.5 bits (126), Expect = 8e-10
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
EV W + + SP ++ + + L+L V E++G+Y C + +E
Sbjct: 41 WAEVRWTKDGEEV-VESPALL-LQKEDTVRRLVLPAVQLEDSGEYLCEIDDE----SASF 94
Query: 63 RVDV 66
V V
Sbjct: 95 TVTV 98
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 53.6 bits (129), Expect = 2e-10
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
+ WLR L S R + + + + ++G Y C S+ G T+
Sbjct: 38 QSINWLRDGVQLV-ESNRTRITGE-----EVEVRDSIPADSGLYACVTSSPSGSDTTYFS 91
Query: 64 VDV 66
V+V
Sbjct: 92 VNV 94
Score = 50.2 bits (120), Expect = 5e-09
Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 78 KPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVR 137
+P +++ V G+ + RL + W++ + S+RT +
Sbjct: 8 QPWGVPVEVESL-LVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRT--RITGEE-- 61
Query: 138 LTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ ++ + ++G Y V + GSD + +V
Sbjct: 62 VEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 53.5 bits (129), Expect = 3e-10
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
V W +G L + R+ +D L + ++ +AG+Y+C E T A
Sbjct: 35 VAPVEWKKGPETL-RDGGRYSLKQD-GTRCELQIHDLSVADAGEYSCMCGQE----RTSA 88
Query: 63 RVDVINVSSGAVKHEKPA 80
+ V + + + P+
Sbjct: 89 TLTVRALPARFTEGSGPS 106
Score = 51.6 bits (124), Expect = 1e-09
Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 5/97 (5%)
Query: 72 GAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTET 131
G+ PA F T + G + L S V W KG + + R +
Sbjct: 1 GSSGSSGPARFTQDLKTK-EASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQ 57
Query: 132 VNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
L + + + G Y + S A +TV
Sbjct: 58 DGTRCELQIHDLSVADAGEYSCMCGQERTS--ATLTV 92
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 53.2 bits (128), Expect = 4e-10
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
W + + + S ++ H LIL +++G++ CR F
Sbjct: 38 DFPATWYKDGQKV-EESELLV-VKMDGRKHRLILPEAKVQDSGEFECRTEGV----SAFF 91
Query: 63 RVDV 66
V V
Sbjct: 92 GVTV 95
Score = 50.9 bits (122), Expect = 3e-09
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 7/100 (7%)
Query: 70 SSGAVKHEKPAMFLT-RPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTM 128
SSG+ P L+ + ++ E + + L+ TW K + + S +
Sbjct: 2 SSGS---SGPVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLV 57
Query: 129 TETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ RL L A ++G + + VTV
Sbjct: 58 VKMDGRKHRLILPEAKVQDSGEFECRTEGVSAF--FGVTV 95
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 53.2 bits (128), Expect = 4e-10
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+ EV W + L SS + + +E L++ EAG+Y+C + +
Sbjct: 39 QTEVTWYKDGKKL-SSSSKVR-VEAVGCTRRLVVQQAGQAEAGEYSCEAGGQ----QLSF 92
Query: 63 RVDV 66
R+ V
Sbjct: 93 RLQV 96
Score = 48.9 bits (117), Expect = 2e-08
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 90 MSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENG 149
+ G + S +A + +VTW K K +++SS+ E V RL +++A E G
Sbjct: 21 VQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAG 79
Query: 150 TYFIVARNIYGSDRAFVTV 168
Y A S + V
Sbjct: 80 EYSCEAGGQQLS--FRLQV 96
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 53.1 bits (128), Expect = 5e-10
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
V W GN L + ++ ++ + L++ + +++G+Y+C G T A
Sbjct: 37 APVKWCYGNNVL-RPGDKYSLRQE-GAMLELVVRNLRPQDSGRYSCSF----GDQTTSAT 90
Query: 64 VDVINVSSG 72
+ V + SG
Sbjct: 91 LTVTALPSG 99
Score = 51.2 bits (123), Expect = 3e-09
Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 4/97 (4%)
Query: 72 GAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTET 131
G+ P F + V G + L+ P V W G + +
Sbjct: 1 GSSGSSGPVRFQEALKDL-EVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQ 58
Query: 132 VNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ L ++ ++G Y + S A +TV
Sbjct: 59 EGAMLELVVRNLRPQDSGRYSCSFGDQTTS--ATLTV 93
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 53.1 bits (128), Expect = 5e-10
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 3 KPEVIWLRGNTPLPKS-SPRFKY-IEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET 60
+V+W++ L + S + +Y + H LI S V E+ G+Y + +
Sbjct: 36 GAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGG----QC 91
Query: 61 FARVDV 66
A + V
Sbjct: 92 EAELIV 97
Score = 49.3 bits (118), Expect = 1e-08
Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 8/101 (7%)
Query: 72 GAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTS----SRT 127
G+ P + +T + V +G+ + + + +V WMK ++T +R
Sbjct: 1 GSSGSSGPVLIVTPLEDQ-QVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARY 58
Query: 128 MTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ L ++ G Y ++ A + V
Sbjct: 59 RFKKDGKRHILIFSDVVQEDRGRYQVITNGGQCE--AELIV 97
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 53.1 bits (128), Expect = 5e-10
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
V W +G+ L + R +D L + G+ AE+AG+Y C E T A
Sbjct: 46 MAPVEWWKGHETL-RDGDRHSLRQD-GARCELQIRGLVAEDAGEYLCMCGKE----RTSA 99
Query: 63 RVDVI 67
+ V
Sbjct: 100 MLTVR 104
Score = 50.4 bits (121), Expect = 5e-09
Identities = 20/116 (17%), Positives = 30/116 (25%), Gaps = 14/116 (12%)
Query: 53 NEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKV 112
+ T A + V P F G L S V
Sbjct: 2 SSGSSGRTSAMLTVR---------ALPIKFTEGLRNE-EATEGATAVLRCEL--SKMAPV 49
Query: 113 TWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
W KG + + R L ++ ++ G Y + S A +TV
Sbjct: 50 EWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKERTS--AMLTV 103
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 52.0 bits (125), Expect = 8e-10
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 11/67 (16%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P W + PL + + ++ V E G Y C V N+ ++
Sbjct: 32 IPHYQWFKNELPLTHETKK-----------LYMVPYVDLEHQGTYWCHVYNDRDSQDSKK 80
Query: 63 RVDVINV 69
+I+
Sbjct: 81 VEIIIDE 87
Score = 47.3 bits (113), Expect = 5e-08
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 12/81 (14%)
Query: 91 SVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGT 150
+ G + GSP P W K +T ++ + + + GT
Sbjct: 14 KLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL---------YMVPYVDLEHQGT 64
Query: 151 YFIVARNIYG---SDRAFVTV 168
Y+ N S + + +
Sbjct: 65 YWCHVYNDRDSQDSKKVEIII 85
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 52.0 bits (125), Expect = 1e-09
Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 13/101 (12%)
Query: 70 SSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMT 129
SSG+ E+ + P+ +VA G ++ + + P P++ WMK + +
Sbjct: 2 SSGSSGLEEVQ-LVVEPEGG-AVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPV- 58
Query: 130 ETVNDYVRLTLKRATDDENGTYFIVARNIYGSDR--AFVTV 168
L L + GTY VA + + V++
Sbjct: 59 --------LILPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
Score = 49.3 bits (118), Expect = 1e-08
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 11/68 (16%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
P++ W++ PLP LIL + ++ G Y+C ++ +
Sbjct: 39 SPQIHWMKDGVPLPLPPS-----------PVLILPEIGPQDQGTYSCVATHSSHGPQESR 87
Query: 63 RVDVINVS 70
V + +
Sbjct: 88 AVSISIIE 95
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 53.4 bits (128), Expect = 1e-09
Identities = 23/169 (13%), Positives = 51/169 (30%), Gaps = 38/169 (22%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
W + +++ +L + E++G+Y C+
Sbjct: 35 SSTKWFHNGSLSEETNS------------SLNIVNAKFEDSGEYKCQHQQVNE------- 75
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFS-FRLAGSPKPKVTWMKGIKDIT 122
S V E + +L + V G+ + KV + K + +
Sbjct: 76 -------SEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALK 128
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG---SDRAFVTV 168
+++ AT +++GTY+ + S+ +TV
Sbjct: 129 YWYENHN--------ISITNATVEDSGTYYCTGKVWQLDYESEPLNITV 169
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 52.7 bits (126), Expect = 1e-09
Identities = 15/83 (18%), Positives = 24/83 (28%), Gaps = 11/83 (13%)
Query: 3 KPEVIWLRGNTPLPKSSPRFK-----------YIEDSNNLHTLILSGVTAEEAGKYTCRV 51
PE+ W + + T+ + + E+ G Y CR
Sbjct: 50 VPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRA 109
Query: 52 SNEYGYTETFARVDVINVSSGAV 74
SN+ V V + AV
Sbjct: 110 SNDPDRNHLTRAPRVKWVRAQAV 132
Score = 50.0 bits (119), Expect = 1e-08
Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 14/110 (12%)
Query: 68 NVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRT 127
+ S + A F+ P + +G + GSP P++ W +
Sbjct: 10 HSSGLVPRGSHMAGFVQAPLSQ-QRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQ 68
Query: 128 M-------------TETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRA 164
+ T + +++ +++ GTY A N +
Sbjct: 69 LWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHL 118
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 52.0 bits (124), Expect = 8e-09
Identities = 25/185 (13%), Positives = 46/185 (24%), Gaps = 34/185 (18%)
Query: 5 EVIWLRGNTPL----------------PKSSPRFKYIEDSNNLH--TLILSGVTAEEAGK 46
E+ W+ + R + D L + VTA ++GK
Sbjct: 38 ELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGK 97
Query: 47 YTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAG 106
Y C + Y + + K A + + I R G
Sbjct: 98 YLCYFQDGDFYEKALVEL-------------KVAALGSDLHVDVKGYKDGGIHLECRSTG 144
Query: 107 -SPKPKVTWMKGI-KDITTSSRTMTETVND-YVRLTLKRATDDENGTYFIVARNIYGSDR 163
P+P++ W ++I T + Y R+
Sbjct: 145 WYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLE 204
Query: 164 AFVTV 168
++
Sbjct: 205 KTASI 209
Score = 32.8 bits (74), Expect = 0.039
Identities = 9/66 (13%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 3 KPEVIWLRGNT-PLPKSSPRFKYIEDSNNLHTLILS-GVTAEEAGKYTCRVSNEYGYTET 60
+P++ W +P + D L+ + S + +C + + E
Sbjct: 148 QPQIQWSNNKGENIPTVEA--PVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEK 205
Query: 61 FARVDV 66
A + +
Sbjct: 206 TASISI 211
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 51.6 bits (124), Expect = 1e-08
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 4 PEVIWL--RGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
P ++WL R + KS+ R D TL + ++ G Y C +N G
Sbjct: 415 PAILWLSPRKHLVSAKSNGRLTVFPDG----TLEVRYAQVQDNGTYLCIAANAGGNDSMP 470
Query: 62 ARVDV 66
A + V
Sbjct: 471 AHLHV 475
Score = 48.9 bits (117), Expect = 2e-07
Identities = 23/90 (25%), Positives = 36/90 (40%)
Query: 79 PAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRL 138
A R + V G + F R G P P + W+ K + ++ TV L
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTL 443
Query: 139 TLKRATDDENGTYFIVARNIYGSDRAFVTV 168
++ A +NGTY +A N G+D +
Sbjct: 444 EVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 49.0 bits (117), Expect = 2e-08
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 11/100 (11%)
Query: 79 PAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSS---RTMTETVND- 134
P + P + V+ GE + + + G P P + W KG + + T R+ +
Sbjct: 9 PPRIVEHPSDL-IVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67
Query: 135 ---YVRLTLKRATDDENGTYFIVARNIYG---SDRAFVTV 168
++R+ R + + G Y VARN G S A + V
Sbjct: 68 SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
Score = 41.3 bits (97), Expect = 2e-05
Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 6/80 (7%)
Query: 3 KPEVIWLRGNTPLPKSSPRF---KYIEDSNNLHTLIL--SGVTAEEAGKYTCRVSNEYGY 57
P + W +G + + + S +L L + + + G Y C N G
Sbjct: 38 TPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGE 97
Query: 58 TETF-ARVDVINVSSGAVKH 76
+ A ++V + H
Sbjct: 98 AVSHDASLEVAAAAHHHHHH 117
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 50.5 bits (120), Expect = 3e-08
Identities = 21/154 (13%), Positives = 42/154 (27%), Gaps = 18/154 (11%)
Query: 10 RGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNE-YGYTETFARVDVIN 68
+ + + +L + G+ E+ G YTC G + V+
Sbjct: 56 PSYSESKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLA 115
Query: 69 VSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTM 128
+ +K + V+ G G P ++TW + + +S+
Sbjct: 116 KPQNTAEVQKVQLTGEPVPMARCVSTG----------GRPPAQITWHSDLGGMPQTSQVP 165
Query: 129 -----TETVNDYVRLTLKRATDDENGTYFIVARN 157
T TV L + +
Sbjct: 166 GFLSGTVTVTSLWILVPSS--QVDGKQVTCKVEH 197
Score = 31.2 bits (70), Expect = 0.12
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHT----LILSGVTAEEAGKYTCRVSNE 54
++ W +P++S + + T IL + + + TC+V +E
Sbjct: 146 PAQITWHSDLGGMPQTS---QVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHE 198
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 50.5 bits (121), Expect = 4e-08
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 3 KPEVIWLRGN-TPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
V W+ N T + + + + S+ TL + VT ++ G YTC VSN G T
Sbjct: 369 LTSVSWITPNGTVMTHGAYKVRIAVLSDG--TLNFTNVTVQDTGMYTCMVSNSVGNTTAS 426
Query: 62 ARVDVI 67
A ++V
Sbjct: 427 ATLNVT 432
Score = 50.1 bits (120), Expect = 5e-08
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 4/92 (4%)
Query: 79 PAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMK--GIKDITTSSRTMTETVNDYV 136
A + P ++V G R A + V+W+ G + + ++D
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCR-ASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGT 398
Query: 137 RLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
L T + G Y + N G+ A T+
Sbjct: 399 -LNFTNVTVQDTGMYTCMVSNSVGNTTASATL 429
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 50.1 bits (120), Expect = 6e-08
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 3 KPEVIWL--RGNTPLPKS-SPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTE 59
V WL G S PR + D TL S V + G YTC V+N G +
Sbjct: 379 MSSVKWLLPNGTVLSHASRHPRISVLNDG----TLNFSHVLLSDTGVYTCMVTNVAGNSN 434
Query: 60 TFARVDV 66
A ++V
Sbjct: 435 ASAYLNV 441
Score = 47.4 bits (113), Expect = 4e-07
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 7/94 (7%)
Query: 77 EKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMK--GIKDITTSSRTMTETVND 134
P + + P + ++ G R P V W+ G S +ND
Sbjct: 351 SAPFI-MDAPRDLN-ISEGRMAELKCR--TPPMSSVKWLLPNGTVLSHASRHPRISVLND 406
Query: 135 YVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
L + G Y + N+ G+ A +
Sbjct: 407 GT-LNFSHVLLSDTGVYTCMVTNVAGNSNASAYL 439
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 49.8 bits (119), Expect = 7e-08
Identities = 12/69 (17%), Positives = 18/69 (26%), Gaps = 3/69 (4%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+V N + + L V E+ G YTC E
Sbjct: 275 MTKVWVSPSNEQVLSQGSNGSVSVRNG---DLFFKKVQVEDGGVYTCYAMGETFNETLSV 331
Query: 63 RVDVINVSS 71
+ V N +
Sbjct: 332 ELKVYNFTL 340
Score = 49.1 bits (117), Expect = 1e-07
Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Query: 86 PDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATD 145
++ LG+ ++ KV + + + + +V + L K+
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGD-LFFKKVQV 310
Query: 146 DENGTYFIVARNIYGSDRAFVTV 168
++ G Y A ++ V +
Sbjct: 311 EDGGVYTCYAMGETFNETLSVEL 333
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 47.9 bits (114), Expect = 1e-07
Identities = 20/167 (11%), Positives = 47/167 (28%), Gaps = 38/167 (22%)
Query: 6 VIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVD 65
W + + + + + T ++G+Y C+ + +++
Sbjct: 40 TQWFHNESLISSQAS------------SYFIDAATVNDSGEYRCQTNLSTLSDP--VQLE 85
Query: 66 VINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFS-FRLAGSPKPKVTWMKGIKDITTS 124
V H + + I + KVT+++ KD
Sbjct: 86 V---------HIGWLLLQAPRWV---FKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF 133
Query: 125 SRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG---SDRAFVTV 168
+ +AT ++G+YF S+ +T+
Sbjct: 134 HHNSD--------FHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172
Score = 36.0 bits (83), Expect = 0.002
Identities = 7/65 (10%), Positives = 19/65 (29%), Gaps = 11/65 (16%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYG-YTETFA 62
+V +L+ ++ + T +++G Y CR +
Sbjct: 119 HKVTYLQNGKDRK----------YFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETV 168
Query: 63 RVDVI 67
+ +
Sbjct: 169 NITIT 173
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 48.2 bits (114), Expect = 3e-07
Identities = 16/135 (11%), Positives = 32/135 (23%), Gaps = 10/135 (7%)
Query: 33 TLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSV 92
L +S +++ + V V+ H + V
Sbjct: 124 ELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLG-------HPCTRTPHFLRIQNVEV 176
Query: 93 ALGEDISFSFRLAGSPKPKVTWMKGIKDIT---TSSRTMTETVNDYVRLTLKRATDDENG 149
G+ +F G D+ +T + + T + G
Sbjct: 177 NAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAG 236
Query: 150 TYFIVARNIYGSDRA 164
Y + R G +
Sbjct: 237 KYRCMIRTEGGVGIS 251
Score = 34.4 bits (78), Expect = 0.016
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 4 PEVIW-LRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYG 56
L+G K + + + T +AGKY C + E G
Sbjct: 194 AGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGG 247
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 46.8 bits (110), Expect = 3e-07
Identities = 23/166 (13%), Positives = 41/166 (24%), Gaps = 28/166 (16%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
+ W + + + ++ H ++ E++G Y C T +
Sbjct: 26 DENLKWEKNG----------QELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYL 75
Query: 63 RVDVINVSSGAVKHE----------KPAMFLTRPDTMMSVALGEDISFSFRLA-GSPKPK 111
+ V + K T + G S L G
Sbjct: 76 KARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGLTDKT 135
Query: 112 VTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARN 157
+ W+K I+ + T L D GTY
Sbjct: 136 IKWLKDGSIISPLNATKN-------TWNLGNNAKDPRGTYQCQGAK 174
Score = 36.8 bits (84), Expect = 0.001
Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 9/56 (16%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
+ WL+ + + + +T L + G Y C+ + E
Sbjct: 133 DKTIKWLKDGSIISPLN---------ATKNTWNLGNNAKDPRGTYQCQGAKETSNP 179
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 45.7 bits (108), Expect = 3e-07
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 6/70 (8%)
Query: 3 KPEVI-WLRGNTPL-PKSSPRFKYIEDSNN---LHTLILSGVTAE-EAGKYTCRVSNEYG 56
P+ I W L +S R+ S + TL +S + Y C N +G
Sbjct: 42 PPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFG 101
Query: 57 YTETFARVDV 66
R+
Sbjct: 102 SDTEIIRLKE 111
Score = 44.1 bits (104), Expect = 1e-06
Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 20/121 (16%)
Query: 56 GYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKP-KVTW 114
G + + + V + P ++ T GE + +P P ++ W
Sbjct: 1 GSSGSSGTLTV---------NGPP--IISSTQTQH-ALHGEKGQIKCFIRSTPPPDRIAW 48
Query: 115 MKGIKDITTSS----RTMTETVNDYVR--LTLKRATD-DENGTYFIVARNIYGSDRAFVT 167
+ + + T + + V LT+ D Y A N +GSD +
Sbjct: 49 SWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIR 108
Query: 168 V 168
+
Sbjct: 109 L 109
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 46.8 bits (111), Expect = 4e-07
Identities = 20/167 (11%), Positives = 48/167 (28%), Gaps = 38/167 (22%)
Query: 6 VIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVD 65
W + + + + + T +++G+Y C+ ++
Sbjct: 40 TQWFHNESLISSQAS------------SYFIDAATVDDSGEYRCQTQL-STLSDPV---- 82
Query: 66 VINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFS-FRLAGSPKPKVTWMKGIKDITTS 124
+ V G + + P + I + KVT+++ K
Sbjct: 83 QLEVHIGWLLLQAPR---------WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF 133
Query: 125 SRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYG---SDRAFVTV 168
+ +AT ++G+YF S+ +T+
Sbjct: 134 HHNSD--------FYIPKATLKDSGSYFCRGLVGSKNVSSETVQITI 172
Score = 35.2 bits (81), Expect = 0.004
Identities = 7/53 (13%), Positives = 16/53 (30%), Gaps = 10/53 (18%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYG 56
+V +L+ ++ + T +++G Y CR
Sbjct: 119 HKVTYLQNGKGRK----------YFHHNSDFYIPKATLKDSGSYFCRGLVGSK 161
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 43.2 bits (101), Expect = 3e-06
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 11/82 (13%)
Query: 2 VKPEVIWLRGNTPLPKSSPRFKYIEDSNNLH------TLILSGVTAEEAGKYTCRVSNEY 55
V + W ++ + ++ + TL + GVT + G YTC S+
Sbjct: 38 VGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 97
Query: 56 GYTETFARVDV-----INVSSG 72
+ V V + SG
Sbjct: 98 MTKKNSTFVRVHEKPFVAFGSG 119
Score = 38.2 bits (88), Expect = 2e-04
Identities = 12/93 (12%), Positives = 31/93 (33%), Gaps = 10/93 (10%)
Query: 86 PDTMMSVALGEDISFSFRLAGSPKPKVTWM----------KGIKDITTSSRTMTETVNDY 135
P + +++GE + + + + K + + +++ +E
Sbjct: 14 PSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFL 73
Query: 136 VRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
LT+ T + G Y A + + + V
Sbjct: 74 STLTIDGVTRSDQGLYTCAASSGLMTKKNSTFV 106
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 44.2 bits (104), Expect = 4e-06
Identities = 21/162 (12%), Positives = 54/162 (33%), Gaps = 18/162 (11%)
Query: 3 KPEVIWLRGNTPLPKSSPRFK---YIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTE 59
K V+ + P +K + +NNL ++++ + + G Y C V
Sbjct: 36 KKMVLTMMSGDM--NIWPEYKNRTIFDITNNL-SIVILALRPSDEGTYECVVLKYEKDAF 92
Query: 60 TFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAG-SPKPKVTWMKGI 118
+ + +S A + + +G P+P ++W++
Sbjct: 93 KREHLAEVTLSVKADFPTPSI-------SDFEIPTSNIRRIICSTSGGFPEPHLSWLENG 145
Query: 119 KDITTSSRTMTETVND---YVRLTLKRATDDENGTYFIVARN 157
+++ + T+++ V L N ++ + +
Sbjct: 146 EELNAINTTVSQDPETELYAVSSKL-DFNMTTNHSFMCLIKY 186
Score = 31.1 bits (70), Expect = 0.13
Identities = 5/52 (9%), Positives = 12/52 (23%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNE 54
+P + WL L + ++ + C +
Sbjct: 136 EPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYG 187
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 43.7 bits (103), Expect = 4e-06
Identities = 15/163 (9%), Positives = 45/163 (27%), Gaps = 28/163 (17%)
Query: 6 VIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVD 65
+ + S ++ L + V+ E+ G Y R+ +E ++
Sbjct: 43 LEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKI-TME 101
Query: 66 VINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSS 125
V + +++P + + + + ++ +G + + +
Sbjct: 102 VYEM-------------VSKPMIYWE---CSNATLTCEVLEGTDVELKLYQGKEHLRSLR 145
Query: 126 RTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ T+ + + A N + V
Sbjct: 146 -----------QKTMSYQWTNLRAPFKCKAVNRVSQESEMEVV 177
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 43.4 bits (102), Expect = 6e-06
Identities = 18/173 (10%), Positives = 51/173 (29%), Gaps = 37/173 (21%)
Query: 4 PEVIWLRGNTPL-------PKSSPRFKY-IEDSNNLHTLILSGVTAEEAGKYTCRVSNEY 55
EV+W + + ++ FK + +L + +T+ + +Y N
Sbjct: 24 KEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNIT 83
Query: 56 GYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWM 115
T F + V+ + +++P + + + + ++
Sbjct: 84 D-TMKF-FLYVLEM-------------VSKPMIYWE---CSNATLTCEVLEGTDVELKLY 125
Query: 116 KGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+G + + + + T+ + + A N + V
Sbjct: 126 QGKEHLRSLR-----------QKTMSYQWTNLRAPFKCKAVNRVSQESEMEVV 167
Score = 30.7 bits (69), Expect = 0.15
Identities = 7/52 (13%), Positives = 13/52 (25%), Gaps = 13/52 (25%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNE 54
E+ +G L +L +S + C+ N
Sbjct: 119 DVELKLYQGKEHL-------------RSLRQKTMSYQWTNLRAPFKCKAVNR 157
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 42.4 bits (99), Expect = 6e-06
Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 14/100 (14%)
Query: 82 FLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWM-----KGIKDITTSSRTMTETVNDYV 136
+P+T S G D+SF+ A S +T+ + ++D + +
Sbjct: 13 ITVQPETQ-SAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGEL 71
Query: 137 R-----LTLKRATDDENGTYFIVARNIYGSDR---AFVTV 168
L L+ G Y V N +GS A +T+
Sbjct: 72 MEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 38.9 bits (90), Expect = 1e-04
Identities = 12/58 (20%), Positives = 16/58 (27%), Gaps = 6/58 (10%)
Query: 5 EVIWLRGNTPLPKSSPRFKYIEDSNNLH------TLILSGVTAEEAGKYTCRVSNEYG 56
W N L + + L L V G Y C +SN +G
Sbjct: 43 TFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFG 100
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 41.8 bits (98), Expect = 8e-06
Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 3 KPEVIWLRGNTPL-------PKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEY 55
+ W R + + S + ++ +S V+ + G+YTC +
Sbjct: 35 NTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFTM- 93
Query: 56 GYTETFARVDVI 67
+ A + V+
Sbjct: 94 PVKTSKAYLTVL 105
Score = 29.4 bits (66), Expect = 0.24
Identities = 8/71 (11%), Positives = 22/71 (30%), Gaps = 9/71 (12%)
Query: 90 MSVALGEDISFSFRLAGSPKPKVTWMK--------GIKDITTSSR-TMTETVNDYVRLTL 140
++V G + R+ + + W K +R + + +++
Sbjct: 16 VTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISV 75
Query: 141 KRATDDENGTY 151
+ + G Y
Sbjct: 76 SDVSLSDEGQY 86
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 43.3 bits (101), Expect = 8e-06
Identities = 26/164 (15%), Positives = 47/164 (28%), Gaps = 22/164 (13%)
Query: 16 PKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRV-SNEYGYTETFARVDVINVSSGAV 74
+ ++ L+L+ + Y C V + G E AR++V
Sbjct: 61 MHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVF------A 114
Query: 75 KHEKPAMFLTRPDTMMSVALGEDISFSFRLA-GSPKPKVTWMKGIKDITTSSRTMTETVN 133
K E T+ + + G+P PK+TW + + + E
Sbjct: 115 KPEAT-EVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYM 173
Query: 134 DYV-------------RLTLKRATDDENGTYFIVARNIYGSDRA 164
L L+ DD + ++ A R
Sbjct: 174 TSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRH 217
Score = 30.5 bits (68), Expect = 0.21
Identities = 8/62 (12%), Positives = 14/62 (22%), Gaps = 11/62 (17%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLH-----------TLILSGVTAEEAGKYTCRVS 52
P++ W R L ++ TL L + + C
Sbjct: 150 PKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAH 209
Query: 53 NE 54
Sbjct: 210 YS 211
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 41.5 bits (97), Expect = 1e-05
Identities = 11/72 (15%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 3 KPEVIWLRGNTPL-------PKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEY 55
+ WL + + +++ + S N ++ + VT ++ G Y C ++
Sbjct: 30 NSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSD- 88
Query: 56 GYTETFARVDVI 67
+ +V V+
Sbjct: 89 SVSTKEVKVIVL 100
Score = 38.8 bits (90), Expect = 1e-04
Identities = 12/97 (12%), Positives = 32/97 (32%), Gaps = 10/97 (10%)
Query: 82 FLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMK--------GIKDITTSSR-TMTETV 132
LT ++V G+ ++ + + W+ + +S+ +
Sbjct: 3 SLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHS 62
Query: 133 NDYVRLTLKRATDDENGTYF-IVARNIYGSDRAFVTV 168
+ + +T+ T + G Y + + + V V
Sbjct: 63 ANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIV 99
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 42.4 bits (98), Expect = 3e-05
Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 9/96 (9%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
V W N L SP++ + L++ ++ ++G Y C +S E +T +
Sbjct: 562 ARVFWKFQNGVLKAESPKYGLMGR----KNLLIFNLSEGDSGVYQC-LSEERVKNKTVFQ 616
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDIS 99
V V+ ++ + + P + G I+
Sbjct: 617 V----VAKHVLEVKVVPKPVVAPTLSVVQTEGSRIA 648
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 41.0 bits (95), Expect = 6e-05
Identities = 25/154 (16%), Positives = 48/154 (31%), Gaps = 10/154 (6%)
Query: 16 PKSSPRFKYIED-SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAV 74
P++ RF+ + D +L + E+ G Y RV ++ + + +N+ A+
Sbjct: 65 PETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQ-NKLNLEVTAL 123
Query: 75 KHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVND 134
+ FL ++ L + S P +W S T +
Sbjct: 124 IEKPDIHFLEPLESGRPTRLSCSLPGSCE--AGPPLTFSWTGN----ALSPLDPETTRSS 177
Query: 135 YVRLTLKRATDDENGTYFIVARNIYGSDRAFVTV 168
+ LT + D + TV
Sbjct: 178 ELTLTPRPE--DHGTNLTCQMKRQGAQVTTERTV 209
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 39.8 bits (92), Expect = 9e-05
Identities = 10/71 (14%), Positives = 23/71 (32%), Gaps = 8/71 (11%)
Query: 4 PEVIWLRGNTPL-------PKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYG 56
+ W R + + + + ++ +S V + G+YTC +
Sbjct: 68 SSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTM-P 126
Query: 57 YTETFARVDVI 67
+ V V+
Sbjct: 127 VRTAKSLVTVL 137
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 40.8 bits (94), Expect = 1e-04
Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 6/64 (9%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
W P + L + +TA++ G Y C + E Y
Sbjct: 529 ATYSWRHKENVEQSCEPGHQSPN-----CILFIENLTAQQYGHYFC-EAQEGSYFREAQH 582
Query: 64 VDVI 67
++
Sbjct: 583 WQLL 586
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 39.9 bits (93), Expect = 1e-04
Identities = 18/144 (12%), Positives = 44/144 (30%), Gaps = 14/144 (9%)
Query: 8 WLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVI 67
++ +T + E + + A +AG+Y C+ + ++++
Sbjct: 43 IIKNSTYREIGRRLKFWNETDPEFV---IDHMDANKAGRYQCQYRIGHYRFRYSDTLELV 99
Query: 68 NVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRT 127
+ + GE+IS + A P + + K + ++
Sbjct: 100 -----VTGLYGKPFLSADRGLV--LMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQS 152
Query: 128 MTETVNDYVRLTLKRATDDENGTY 151
N +L + +G Y
Sbjct: 153 GEHPAN----FSLGPVDLNVSGIY 172
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 39.2 bits (91), Expect = 2e-04
Identities = 19/172 (11%), Positives = 46/172 (26%), Gaps = 41/172 (23%)
Query: 4 PEVIWLRGNTPLP-------------KSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCR 50
+ WL T L ++P+ + ++L LS + E+ G Y +
Sbjct: 29 NFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQ 88
Query: 51 VSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLA----- 105
+S + + + ++ L L ++++ L
Sbjct: 89 ISTKTSAKLSSYTLRIL-------------RQLRNIQVTNHSQLFQNMTCELHLTCSVED 135
Query: 106 GSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVARN 157
W +++ + ++ Y +A N
Sbjct: 136 ADDNVSFRWEALGNTLSSQPN---------LTVSWDPRISS-EQDYTCIAEN 177
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell
adhesion protein, immunoglobulin fold, I-SET fold, cell
adhesion glycoprotein; 1.9A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Length = 210
Score = 39.1 bits (90), Expect = 2e-04
Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 7/64 (10%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
V W +T L ++ L + + AG C S +
Sbjct: 37 GASVQWRGLDTSLGA-------VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTV 89
Query: 63 RVDV 66
++ V
Sbjct: 90 QLLV 93
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 38.9 bits (90), Expect = 3e-04
Identities = 19/164 (11%), Positives = 42/164 (25%), Gaps = 23/164 (14%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
PE L T L + + L + E + C +
Sbjct: 31 PERGGLE--TSLRR-----NGTQRGLRWLARQLVDIREPE-TQPVCFFRCARRTLQARGL 82
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGS---PKPKVTWMKGIKD 120
+ P +GE+ + S R+ G+ +T ++G ++
Sbjct: 83 IRTFQRPDRVELMPLPPW----------QPVGENFTLSCRVPGAGPRASLTLTLLRGAQE 132
Query: 121 IT--TSSRTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSD 162
+ + + + T+ +D + A
Sbjct: 133 LIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRPH 176
Score = 27.3 bits (60), Expect = 2.1
Identities = 8/52 (15%), Positives = 17/52 (32%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNE 54
+ LRG L + S + + T + + ++CR +
Sbjct: 121 SLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELD 172
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 38.7 bits (90), Expect = 3e-04
Identities = 21/161 (13%), Positives = 42/161 (26%), Gaps = 23/161 (14%)
Query: 6 VIWLRGNTPLPKSSP-RFKYIEDSNNLHTLILSGVTAEEAGKYTC---RVSNEYGYTETF 61
+ + G + P + L + ++G Y C T F
Sbjct: 47 LFYSVGIGQISSEVPQNLSASRPQDRQFILSSKKLLLSDSGFYLCAWSVSVGAGVPTIYF 106
Query: 62 ARVDVINVSSGAVKHEKPAMFLTRP-----DTMMSVALGEDISFSFRLAGSPKP-KVTWM 115
+ V K P + + P L + P +++W
Sbjct: 107 GEGSWLTVVEDLNKVFPPEVAVFEPSEAEISHTQKATLVCLAT-----GFFPDHVELSWW 161
Query: 116 KGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVAR 156
K++ + T + LK + Y + +R
Sbjct: 162 VNGKEVHSGVCTDPQ--------PLKEQPALNDSRYALSSR 194
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 38.0 bits (88), Expect = 3e-04
Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 18/85 (21%)
Query: 5 EVIWLRGNTP----------------LPKSSPRFKYIEDSNNLH--TLILSGVTAEEAGK 46
EV W R P+ R + +++S L + V + G
Sbjct: 40 EVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGG 99
Query: 47 YTCRVSNEYGYTETFARVDVINVSS 71
YTC + E + V +
Sbjct: 100 YTCFFRDHSYQEEAAVELKVEDPFY 124
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 38.7 bits (90), Expect = 4e-04
Identities = 30/158 (18%), Positives = 47/158 (29%), Gaps = 20/158 (12%)
Query: 6 VIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVD 65
+I+ + P P S +L +SG+ AE+ Y C N + F
Sbjct: 46 LIY--RDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGT 103
Query: 66 VINVSSGAVKHEKPAMFLTRP----DTMMSVALGEDISFSFRLAGSPKP-KVTWMKGIKD 120
+ V + P + L P L IS F P V W
Sbjct: 104 KVTVLGQPKAN--PTVTLFPPSSEELQANKATLVCLIS-DF----YPGAVTVAWKADGSP 156
Query: 121 ITTSSRTMT---ETVNDYV---RLTLKRATDDENGTYF 152
+ T ++ N Y L+L + +Y
Sbjct: 157 VKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYS 194
Score = 32.5 bits (74), Expect = 0.049
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
Query: 6 VIWLRGNTPLPKSSPRFKYIEDSNNLHT----LILSGVTAEEAGKYTCRVSNEYGYTETF 61
V W +P+ K + SNN + L L+ + Y+C+V++E E
Sbjct: 148 VAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVE-- 205
Query: 62 ARVDVINVSSGAVKHEKPAMFLTRP 86
+ S + K P++F P
Sbjct: 206 -KTVAPTECSASTKG--PSVFPLAP 227
Score = 30.6 bits (69), Expect = 0.26
Identities = 22/162 (13%), Positives = 51/162 (31%), Gaps = 29/162 (17%)
Query: 6 VIWLRGNTPLPKSSPRFKYIEDSNNLH----TLILSGVTAEEAGKYTCRVSNEYGYTETF 61
W + + + + + N+ + L + + +Y C+VSN+
Sbjct: 355 FNWYVDGVQVHNAKTKPR-EQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIE 413
Query: 62 ARVDVINVSSGAVKHEKPAMFLTRPDTMM----SVALG--------EDISFSFRLAGSPK 109
I+ + G + +P ++ P V+L DI+ + G P+
Sbjct: 414 KT---ISKAKGQPR--EPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPE 468
Query: 110 PKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTY 151
T + Y +LT+ ++ + +
Sbjct: 469 NNYK-------TTPPVLDSDGSFFLYSKLTVDKSRWQQGNVF 503
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 37.9 bits (87), Expect = 7e-04
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 5/55 (9%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
V W+ R + L+L V ++G Y+C + T
Sbjct: 37 ATVHWVLRKPAAGSHPSR-----WAGMGRRLLLRSVQLHDSGNYSCYRAGRPAGT 86
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 36.8 bits (85), Expect = 7e-04
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 8/69 (11%)
Query: 6 VIWLRGNTPLPKSSPRFK-------YIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
+I G+ P K S + ++ ++ + + G Y C+V G
Sbjct: 57 IILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDA-SINVTNLQLSDIGTYQCKVKKAPGVA 115
Query: 59 ETFARVDVI 67
+ V+
Sbjct: 116 NKKIHLVVL 124
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 37.5 bits (86), Expect = 0.001
Identities = 18/159 (11%), Positives = 44/159 (27%), Gaps = 7/159 (4%)
Query: 6 VIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVD 65
V+ LRG L + + + + T + ++CR + + +
Sbjct: 121 VVLLRGEKELKREP----AVGEPAEV-TTTVLVRRDHHGANFSCRTELDLR-PQGLELFE 174
Query: 66 VINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSS 125
+ P + + + + + L G + +
Sbjct: 175 NTSAPYQLQTFVLP-ATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN 233
Query: 126 RTMTETVNDYVRLTLKRATDDENGTYFIVARNIYGSDRA 164
T+T + + T ++ GT + I G+
Sbjct: 234 PTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQ 272
Score = 25.6 bits (55), Expect = 8.4
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 7/66 (10%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKY--TCRVSNEYGYTET 60
+ +V G+ L + +++ VTAE+ G TC V ET
Sbjct: 220 EAQVHLALGDQRLNPTV-----TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQET 274
Query: 61 FARVDV 66
V +
Sbjct: 275 LQTVTI 280
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 34.4 bits (78), Expect = 0.004
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 7/67 (10%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF- 61
E++W + + D ++L + E++G Y C F
Sbjct: 33 GSEILWQHNDKNIGGDEDDKNIGSDEDHL--SLKEFSELEQSGYYVCYPRGSKPEDANFY 90
Query: 62 ----ARV 64
ARV
Sbjct: 91 LYLRARV 97
Score = 27.4 bits (60), Expect = 1.2
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 107 SPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDEN-GTYFIVARNIYGSDR 163
P ++ W K+I ++ L+LK ++ E G Y R D
Sbjct: 31 YPGSEILWQHNDKNIGGDEDDKNIGSDED-HLSLKEFSELEQSGYYVCYPRGSKPEDA 87
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 35.7 bits (82), Expect = 0.004
Identities = 22/155 (14%), Positives = 50/155 (32%), Gaps = 12/155 (7%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
E+I+ + P+ + + + N ++ +S +T +AG Y C + F
Sbjct: 46 RELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKS 105
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMM-SVALGEDISFSFRLAGSPKP-KVTWMKGIKDI 121
+S A T +V+ S F SP+ + W K ++
Sbjct: 106 GAGTELSVRAKPSAPVVSGPAARATPQHTVSFT-CESHGF----SPRDITLKWFKNGNEL 160
Query: 122 TTSSRTMTE-----TVNDYVRLTLKRATDDENGTY 151
+ + + + + + +D +
Sbjct: 161 SDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQV 195
Score = 26.8 bits (59), Expect = 3.6
Identities = 15/155 (9%), Positives = 42/155 (27%), Gaps = 27/155 (17%)
Query: 5 EVIWLRGNTPLPKSSPRFKYIEDSNNLHT----LILSGVTAEEAGKYTCRVSNEYGYTET 60
+ W + L + ++ + + + C V++ +
Sbjct: 150 TLKWFKNGNELSDFQTNVDP-VGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTL--QG 206
Query: 61 FARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKP-KVTWMKGIK 119
N+S + V + + P+ ++TW++
Sbjct: 207 DPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVR-----KFYPQRLQLTWLENGN 261
Query: 120 DITTSSRTMTETVNDYVRLTLKRATDDENGTYFIV 154
T + + T++++GTY +
Sbjct: 262 VSRTETAS--------------TVTENKDGTYNWM 282
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 35.4 bits (81), Expect = 0.005
Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 4/122 (3%)
Query: 33 TLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLTRPDTMMSV 92
+L L G+ EEAG+Y C V + +++V S + D M
Sbjct: 83 SLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEV-VASPASRLLLDQVGMKENEDKYMCE 141
Query: 93 ALG---EDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATDDENG 149
+ G E I+ ++ P + + + M T N L L + +D
Sbjct: 142 SSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGT 201
Query: 150 TY 151
Y
Sbjct: 202 VY 203
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 34.9 bits (80), Expect = 0.007
Identities = 22/157 (14%), Positives = 46/157 (29%), Gaps = 23/157 (14%)
Query: 10 RGNTPLPKSSP-RFKYIEDSNNLHTLILSGVTAEEAGKYTC---RVSNEYGYTETFARVD 65
T +F S L TL ++ E++ Y C +++ + F
Sbjct: 77 SKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGT 136
Query: 66 VINVSSGAVKHEKPAMFLTRP-----DTMMSVALGEDISFSFRLAGSPKP-KVTWMKGIK 119
+ V+ P + + P L + P +++W K
Sbjct: 137 RLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLAT-----GFYPDHVELSWWVNGK 191
Query: 120 DITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVAR 156
++ + T + LK + Y + +R
Sbjct: 192 EVHSGVSTDPQ--------PLKEQPALNDSRYSLSSR 220
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 33.3 bits (75), Expect = 0.013
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 27 DSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTE 59
+ TL L+ V ++ G+Y C+V+ TE
Sbjct: 87 ANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTE 119
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 34.1 bits (78), Expect = 0.014
Identities = 23/161 (14%), Positives = 42/161 (26%), Gaps = 23/161 (14%)
Query: 6 VIWLR-GNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYG---YTETF 61
+ LR KS P Y+ L L + C S ++ F
Sbjct: 47 LFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGRTLYCTSSADHWTNTGQLYF 106
Query: 62 ARVDVINVSSGAVKHEKPAMFLTRP-----DTMMSVALGEDISFSFRLAGSPKP-KVTWM 115
+ V P + + P L + P +++W
Sbjct: 107 GEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLAT-----GFYPDHVELSWW 161
Query: 116 KGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVAR 156
K++ + T + LK + Y + +R
Sbjct: 162 VNGKEVHSGVSTDPQ--------PLKEQPALNDSRYALSSR 194
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell
immunoglobulin mucin, signaling protein; 1.95A {Mus
musculus} PDB: 3kaa_A*
Length = 109
Score = 33.0 bits (75), Expect = 0.015
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIED-SNNLHTLILSGVTAEEAGKYTCRVSNE 54
E++ + S R++ D + +LI+ VT ++ G Y CR+
Sbjct: 43 NELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFP 94
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 33.7 bits (77), Expect = 0.017
Identities = 22/155 (14%), Positives = 44/155 (28%), Gaps = 21/155 (13%)
Query: 10 RGNTPLPKSSP-RFKYIEDSNNLHTLILSGVTAEEAGKYTC-RVSNEYGYTETFARVDVI 67
T +F S L TL ++ E++ Y C ++ + F +
Sbjct: 54 SKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRL 113
Query: 68 NVSSGAVKHEKPAMFLTRP-----DTMMSVALGEDISFSFRLAGSPKP-KVTWMKGIKDI 121
V P + + P L + P +++W K++
Sbjct: 114 TVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLAT-----GFYPDHVELSWWVNGKEV 168
Query: 122 TTSSRTMTETVNDYVRLTLKRATDDENGTYFIVAR 156
+ T + LK + Y + +R
Sbjct: 169 HSGVCTDPQ--------PLKEQPALNDSRYALSSR 195
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 32.6 bits (74), Expect = 0.017
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 11/73 (15%)
Query: 5 EVIWLRGNTPLPKSSPRFKY---------IEDSNNLHTLILSGVTAEEAGKYTCRVS-NE 54
+V W + + L + + + L L L +T + G+Y C
Sbjct: 36 QVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGL-GLTLQSLTVNDTGEYFCIYHTYP 94
Query: 55 YGYTETFARVDVI 67
G ++V+
Sbjct: 95 DGTYTGRIFLEVL 107
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 32.5 bits (74), Expect = 0.020
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLH----TLILSGVTAEEAGKYTCRVSN 53
++ + P S R +++ +L + G+ E+ G YTC
Sbjct: 46 GSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVT 100
>3osk_A Cytotoxic T-lymphocyte protein 4; beta sandwich, homodimer,
immunoglobulin superfamily (beta S fold, receptor,
signalling, B7-1(CD80), B7-2(CD86); HET: NAG; 1.80A
{Homo sapiens} PDB: 2x44_D 1i85_C 1ah1_A* 1i8l_C* 3bx7_C
Length = 130
Score = 32.4 bits (73), Expect = 0.025
Identities = 13/55 (23%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
Query: 4 PEVIWLRGNT--PLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYG 56
EV L S N L + G+ A + G Y C+V Y
Sbjct: 47 TEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYP 101
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 33.0 bits (75), Expect = 0.026
Identities = 22/149 (14%), Positives = 42/149 (28%), Gaps = 17/149 (11%)
Query: 5 EVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARV 64
E + P+ + + + + + AG+Y+C ++E +
Sbjct: 36 EYQLHFEGSLFAVDRPKPPERINKVKFY---IPDMNSRMAGQYSCIYRVGELWSEPSNLL 92
Query: 65 DVINVSSGAVKHEKPAMFLT-RPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITT 123
D++ V L+ P V GE ++F R + +K +
Sbjct: 93 DLV------VTEMYDTPTLSVHPGPE--VISGEKVTFYCR-LDTATSMFLLLKEGRSSHV 143
Query: 124 SSRTMTETVNDYVRLTLKRATDDENGTYF 152
L T GTY
Sbjct: 144 QRGYGKVQAE----FPLGPVTTAHRGTYR 168
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA,
IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB:
3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Length = 257
Score = 33.0 bits (76), Expect = 0.028
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 3 KPEVIWLRGNTPLPKSSP-RFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
+W+ + L P RF S ++L +S + AE+A Y C + + +T
Sbjct: 183 SSPKLWIYSTSNLASGVPARFS-GSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFT 238
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 33.0 bits (75), Expect = 0.029
Identities = 22/156 (14%), Positives = 43/156 (27%), Gaps = 29/156 (18%)
Query: 6 VIWLRGNTPLPKS--SPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
+I K RF + + + +S + E++ Y C S +G + F
Sbjct: 47 LIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGP 106
Query: 64 VDVINVSSGAVKHEKPAMFLTRP--------DTMMSVALGEDISFSFRLAGSPKPKVTWM 115
+ V P + L P V L +++W
Sbjct: 107 GTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDH-------VELSWW 159
Query: 116 KGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTY 151
K++ + T + + N +Y
Sbjct: 160 VNGKEVHSGVSTDPQAY------------KESNYSY 183
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 31.8 bits (72), Expect = 0.033
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 5 EVIWLRGNTPLPKSSPRFKYIED-SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
+IW G+ + S R+ S +L + ++G Y CRV + +
Sbjct: 45 TLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVT 104
Query: 64 VDVI 67
+
Sbjct: 105 FSLQ 108
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin,
CD277, immune system; 3.52A {Mus musculus}
Length = 254
Score = 32.7 bits (75), Expect = 0.033
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
P ++ + + RF S TL ++ V E+ G Y C+ SN + +T
Sbjct: 180 PRLLIKYASQSIFGIPSRFS-GSGSGTEFTLSINSVETEDFGIYFCQQSNSWPHT 233
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 31.7 bits (72), Expect = 0.033
Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 27 DSNNLHTLILSGVTAEEAGKYTCRVSNE 54
DS++ TL L + ++ G Y C + ++
Sbjct: 65 DSDSW-TLRLHNLQIKDKGLYQCIIHHK 91
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 31.7 bits (72), Expect = 0.037
Identities = 8/66 (12%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 6 VIWLRGNTPLPKSSPRFKYIEDSNNLH-TLILSGVTAEEAGKYTCRVSNEYGYTETFARV 64
+ + R + + + ++ L+L + E++G Y R +
Sbjct: 52 IHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEISDSNRWLDVKG 111
Query: 65 DVINVS 70
+ V+
Sbjct: 112 TTVTVT 117
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 31.9 bits (72), Expect = 0.044
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 33 TLILSGVTAEEAGKYTCRVSN 53
TL L G+T E+ G YTC +
Sbjct: 94 TLALHGLTVEDEGNYTCEFAT 114
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 31.5 bits (71), Expect = 0.050
Identities = 9/49 (18%), Positives = 19/49 (38%)
Query: 21 RFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINV 69
R K +L ++ + ++ YTC V+ + R +I +
Sbjct: 67 RLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIEL 115
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2;
beta barrel, immunoglobulin fold, IGV domain, TIM,
immune system; 1.50A {Mus musculus}
Length = 115
Score = 31.1 bits (70), Expect = 0.056
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 5 EVIWLRGNTPLPKSSPRFKYIEDSNNLH-TLILSGVTAEEAGKYTCRV 51
+IW G T + + R++ + + + +L + + G Y C V
Sbjct: 46 SLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTVVGDGGPYCCVV 93
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain
FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus}
SCOP: b.1.1.1 b.1.1.1
Length = 282
Score = 32.0 bits (73), Expect = 0.059
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 6 VIWLRGNTPLPKSSP-RFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
+W+ + L P RF S ++L +S + AE+A Y C+ + Y T
Sbjct: 205 KLWIYSTSNLASGVPARFS-GSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLT 257
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor,
immune system/receptor/complex, TCR, MHC,
immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E
2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D*
3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E
3kxf_E 2cde_B ...
Length = 252
Score = 32.3 bits (73), Expect = 0.059
Identities = 18/154 (11%), Positives = 43/154 (27%), Gaps = 11/154 (7%)
Query: 6 VIWLRGNTPLPKS--SPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
+ + + K + + + L ++ Y C S+ Y + F
Sbjct: 48 IYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGP 107
Query: 64 VDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKP-KVTWMKGIKDIT 122
+ V+ P + + P + P +++W K++
Sbjct: 108 GTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH 167
Query: 123 TSSRTMTETVNDYVRLTLKRATDDENGTYFIVAR 156
+ T + LK + Y + +R
Sbjct: 168 SGVSTDPQ--------PLKEQPALNDSRYSLSSR 193
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell
membrane, disulfide bond, glycoprotein, immunoglobulin
domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC;
3.60A {Homo sapiens}
Length = 589
Score = 32.3 bits (73), Expect = 0.067
Identities = 7/65 (10%), Positives = 21/65 (32%), Gaps = 5/65 (7%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
++W + +PK Y + ++ + + + TC + +
Sbjct: 39 ANYIVWKTNHFTIPKEQ----YTIINRTASSVTFTDIASLNIQ-LTCNILTFGQLEQNVY 93
Query: 63 RVDVI 67
+ +I
Sbjct: 94 GITII 98
Score = 30.4 bits (68), Expect = 0.30
Identities = 7/78 (8%), Positives = 12/78 (15%), Gaps = 10/78 (12%)
Query: 92 VALGEDISFS-------FRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRAT 144
V L + + + W I T +N
Sbjct: 15 VQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYT---IINRTASSVTFTDI 71
Query: 145 DDENGTYFIVARNIYGSD 162
N +
Sbjct: 72 ASLNIQLTCNILTFGQLE 89
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 31.3 bits (71), Expect = 0.085
Identities = 21/148 (14%), Positives = 46/148 (31%), Gaps = 12/148 (8%)
Query: 5 EVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARV 64
E + +P P + + N + +T + AG+Y C + G+++ +
Sbjct: 34 EYRLDKEESPAPWDR---QNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPL 90
Query: 65 DVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMK-GIKDITT 123
+++ + L+ V G+ ++ + + SP K
Sbjct: 91 ELV------MTGAYSKPTLS-ALPSPLVTSGKSVTLLCQ-SRSPMDTFLLCKERAAHPLL 142
Query: 124 SSRTMTETVNDYVRLTLKRATDDENGTY 151
R+ + T GTY
Sbjct: 143 CLRSEHGAQQHQAEFPMSPVTSVHGGTY 170
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4;
beta barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 30.7 bits (69), Expect = 0.086
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 5 EVIWLRGNTPLPKSSPRFKYIEDSNNLH-TLILSGVTAEEAGKYTCRVSN 53
E++ G + + S ++ + +L +S ++G Y CR+
Sbjct: 45 ELLRTDGTRIISRKSTKYTLLGKVQFGEVSLTISNTNRGDSGVYCCRIEV 94
>1dqt_A CTLA4, cytotoxic T lymphocyte associated antigen 4;
immunoglobulin variable domain-like beta-sandwich,
homodimer, immune system; 2.00A {Mus musculus} SCOP:
b.1.1.1
Length = 117
Score = 30.8 bits (69), Expect = 0.099
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 4 PEVIWLRGNT--PLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYG 56
EV + F + + L + G+ A + G Y C+V Y
Sbjct: 45 TEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTGLYLCKVELMYP 99
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 31.3 bits (71), Expect = 0.10
Identities = 7/55 (12%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 5 EVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTE 59
E + P+ + + + + + AG+Y+C ++E
Sbjct: 33 EYQLHFEGSLFAVDRPKPPERINKVKFY---IPDMNSRMAGQYSCIYRVGELWSE 84
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 31.5 bits (71), Expect = 0.11
Identities = 11/58 (18%), Positives = 16/58 (27%), Gaps = 2/58 (3%)
Query: 6 VIWLRGNTPLPKS--SPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
+ + G K +K S +LIL T + Y C G
Sbjct: 44 IHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQ 101
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 30.3 bits (68), Expect = 0.13
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 10/67 (14%)
Query: 5 EVIWLRGNTPL---------PKSSPRFKY-IEDSNNLHTLILSGVTAEEAGKYTCRVSNE 54
++ W +FK + L +S V E+ Y RV +
Sbjct: 36 QLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKK 95
Query: 55 YGYTETF 61
G + +
Sbjct: 96 TGNEQEW 102
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 30.0 bits (67), Expect = 0.14
Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 11/72 (15%)
Query: 3 KPEVIWLRGNTPLPKSSPRFKY--------IEDSNNLHTLILSGVTAEEAGKYTCRVSNE 54
+ W L + P + IE H LIL V +++G V
Sbjct: 35 IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGAL---VGFS 91
Query: 55 YGYTETFARVDV 66
+ A + +
Sbjct: 92 CPGVQDSAALTI 103
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 31.1 bits (70), Expect = 0.17
Identities = 23/157 (14%), Positives = 46/157 (29%), Gaps = 25/157 (15%)
Query: 5 EVIWLRGNTPLPKSSPRFKYIEDSNNLHT----LILSGVTAEEAGKYTCRVSNEYGYTET 60
W + P D ++ L +TC + T
Sbjct: 281 TFTWTPSSGKSAVQGPP---ERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPL 337
Query: 61 FARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAG-SPKP-KVTWMKGI 118
A + S + +P + L P +AL E ++ + G SPK V W++G
Sbjct: 338 TATL------SKSGNTFRPEVHLLPP-PSEELALNELVTLTCLARGFSPKDVLVRWLQGS 390
Query: 119 KDITTSSRTMTETVNDYVRLTLKRATDDENGTYFIVA 155
+++ + + T+ + +
Sbjct: 391 QELPREKYLTWASRQE---------PSQGTTTFAVTS 418
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 30.8 bits (69), Expect = 0.18
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 26 EDSNNLHTLILSG--VTAEEAGKYTCRVSNEYGYTETFARVDV 66
+++ I + + ++G + C V+ G E + V
Sbjct: 377 NHTDHFSVAIFTIHRILPPDSGVWVCSVNTVAGMVEKPFNISV 419
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 29.9 bits (67), Expect = 0.20
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 11 GNTPLPKSSPRFKY-IEDSNNLH----TLILSGVTAEEAGKYTCRVSNE 54
P FK I+ + ++++ + + G +TC V N
Sbjct: 55 KGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNP 103
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody,
domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Length = 256
Score = 30.4 bits (69), Expect = 0.21
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 6 VIWLRGNTPLPKSSP-RFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
+ + + P RF S TL +S V AE+ G Y C + YT
Sbjct: 170 KLLIYKVSNRFSGVPDRFS-GSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYT 222
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 30.2 bits (68), Expect = 0.21
Identities = 22/154 (14%), Positives = 42/154 (27%), Gaps = 25/154 (16%)
Query: 6 VIWLRGNTPLPKSSPRFKYIEDSNNL----HTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
W + P D L +TC + T
Sbjct: 39 FTWTPSSGKSAVQGPP---ERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKT--- 92
Query: 62 ARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAG-SPKP-KVTWMKGIK 119
+ S + +P + L P +AL E ++ + G SPK V W++G +
Sbjct: 93 ---PLTATLSKSGNTFRPEVHLLPP-PSEELALNELVTLTCLARGFSPKDVLVRWLQGSQ 148
Query: 120 DITTSSRTMTETVNDYVRLTLKRATDDENGTYFI 153
++ + + T+ +
Sbjct: 149 ELPREKYLTWASRQE---------PSQGTTTFAV 173
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 30.4 bits (68), Expect = 0.22
Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 19/160 (11%)
Query: 5 EVIWLRGNTPLPKSSPRFKYIEDSNN---LHTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
++ WL + ++ L LS YTC+V+ + E
Sbjct: 42 QITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDS 101
Query: 62 ARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAG----SPKPKVTWMK- 116
+ + G + +L+RP + + + + + + + ++TW +
Sbjct: 102 TKKCADSNPRG------VSAYLSRP-SPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRA 154
Query: 117 GIKDITTSSRTMTETVNDYVR----LTLKRATDDENGTYF 152
K + S+R + N + L + E TY
Sbjct: 155 SGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQ 194
Score = 29.6 bits (66), Expect = 0.45
Identities = 27/161 (16%), Positives = 50/161 (31%), Gaps = 23/161 (14%)
Query: 5 EVIWLRGNTPLPKSSPRFKYIEDSNNL----HTLILSGVTAEEAGKYTCRVSNEYGYTET 60
++ W R + P + K + N TL + E Y CRV++ +
Sbjct: 148 QLTWSRASGK-PVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRAL 206
Query: 61 FARVDVINVSSGAVKHEKPAMFLTRPDTMM--SVALGEDISFSFRLAGSPKP-KVTWMKG 117
+SG + F T L I +F P+ V W+
Sbjct: 207 MRS---TTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQ-NF----MPEDISVQWLHN 258
Query: 118 IKDITTSSRTMTETVND-------YVRLTLKRATDDENGTY 151
+ + + T+ + RL + RA ++ +
Sbjct: 259 EVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEF 299
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 29.5 bits (66), Expect = 0.25
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 18 SSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
SS F + D+NN + L L+ + E G Y C V +
Sbjct: 71 SSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMY 111
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B,
IG-beta, BCR, immunoglobulin domain, protein binding;
3.20A {Homo sapiens}
Length = 134
Score = 29.6 bits (67), Expect = 0.27
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 28 SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
+ +L TL + G+ E+ G Y C+
Sbjct: 76 NESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQ 109
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system;
3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 229
Score = 30.0 bits (68), Expect = 0.31
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 11/76 (14%)
Query: 26 EDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDV------INVSSGAVKHEKP 79
+ + NL L + + + G Y C + G + + + V + H KP
Sbjct: 69 DIAKNLAVLKILAPSERDEGSYYC-ACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKP 127
Query: 80 AMFLTRPDTMMSVALG 95
++F+ + +
Sbjct: 128 SVFVMKN----GTNVA 139
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 29.1 bits (65), Expect = 0.35
Identities = 8/48 (16%), Positives = 16/48 (33%)
Query: 5 EVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVS 52
+ + + +P ++ L + V +A Y CRV
Sbjct: 54 KEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVE 101
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 29.6 bits (66), Expect = 0.37
Identities = 23/156 (14%), Positives = 43/156 (27%), Gaps = 23/156 (14%)
Query: 6 VIWLRGNTPLPKSSP---RFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFA 62
++ + KS +F + TL + E++ Y C S Y E F
Sbjct: 47 LVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFF 106
Query: 63 RVDV-INVSSGAVKHEKPAMFLTRP-----DTMMSVALGEDISFSFRLAGSPKP-KVTWM 115
+ V P + + P L + P +++W
Sbjct: 107 GPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLAT-----GFYPDHVELSWW 161
Query: 116 KGIKDITTSSRTMTETVNDYVRLTLKRATDDENGTY 151
K++ + T + LK + Y
Sbjct: 162 VNGKEVHSGVCTDPQ--------PLKEQPALNDSRY 189
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5
isoform 1; immunoglobulin-like fold, immune system;
1.85A {Homo sapiens}
Length = 196
Score = 29.5 bits (66), Expect = 0.37
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 5 EVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTE 59
E ++ +P P + ++ + +T AG+Y C + G++E
Sbjct: 34 EYRLVKEGSPEPWDTQNPLEPKNKARFS---IPSMTEHHAGRYRCYYYSPAGWSE 85
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB:
3kho_A*
Length = 133
Score = 28.8 bits (65), Expect = 0.48
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 28 SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
+ +++TL + + E+ G Y C+ +
Sbjct: 73 NGSVYTLTIQNIQYEDNGIYFCKQKCDSANHNVT 106
>3iz6_E 40S ribosomal protein S2 (S5P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
2zkq_e 1s1h_E
Length = 274
Score = 29.5 bits (66), Expect = 0.54
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 105 AGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLK 141
A KV GI+D+ TSSR T+T+ ++V+ T
Sbjct: 189 AARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFD 225
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 29.1 bits (65), Expect = 0.59
Identities = 26/151 (17%), Positives = 43/151 (28%), Gaps = 16/151 (10%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
+ + + + +S VT AG YTCR S+ + T A
Sbjct: 52 NNFMLYKEDRIHIPIFH------GRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAP 105
Query: 64 VD--VINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMK-GIKD 120
+ VI V+ + + L P + V GE + + K GI
Sbjct: 106 SNPVVIMVT----GNHRKPSLLAHPGPL--VKSGERVILQCW-SDIMFEHFFLHKEGISK 158
Query: 121 ITTSSRTMTETVNDYVRLTLKRATDDENGTY 151
+ ++ GTY
Sbjct: 159 DPSRLVGQIHDGVSKANFSIGPMMLALAGTY 189
Score = 26.0 bits (57), Expect = 7.7
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 33 TLILSGVTAEEAGKYTCRVSNEYG 56
+ + AG Y C S +
Sbjct: 175 NFSIGPMMLALAGTYRCYGSVTHT 198
>3u5c_C Guanine nucleotide-binding protein subunit beta-L protein (ASC1,
RACK1); translation, ribosome, ribosomal, ribosomal R
ribosomal protein, eukaryotic ribosome, RNA-protein C;
3.00A {Saccharomyces cerevisiae} PDB: 3izb_E 3o30_B
3o2z_B 3u5g_C 3jyv_E* 1s1h_E
Length = 254
Score = 29.1 bits (65), Expect = 0.59
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 105 AGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLK 141
A K+ + G++D+ T S T T+ + ++
Sbjct: 180 ASPAVKKLLQLAGVEDVYTQSNGKTRTLENTLKAAFV 216
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 28.3 bits (63), Expect = 0.61
Identities = 7/49 (14%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 28 SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKH 76
N + ++ ++ +++G+Y C + V + V H
Sbjct: 71 ENGTFVVNIAQLSQDDSGRYKCGL--GINSRGLSFDVSL-EVLEHHHHH 116
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune
system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L
2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L*
1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L*
1mfb_L* ...
Length = 212
Score = 28.8 bits (65), Expect = 0.64
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 5 EVIWLRGNTPLPKSSPRFKYIEDSNNLH----TLILSGVTAEEAGKYTCRVSNE 54
V W TP+ + + SNN + L L+ E Y+C+V++E
Sbjct: 148 TVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHE 201
Score = 28.8 bits (65), Expect = 0.76
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 28 SNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
+ L ++G E+ Y C + +
Sbjct: 69 IGDKAALTITGAQTEDEAIYFCALWSNNKLV 99
>1cid_A T cell surface glycoprotein CD4; 2.80A {Rattus norvegicus} SCOP:
b.1.1.1 b.1.1.3
Length = 177
Score = 28.6 bits (63), Expect = 0.67
Identities = 11/66 (16%), Positives = 23/66 (34%)
Query: 8 WLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVI 67
+ KS+ K+ TL + V+ + AG ++ + G + V+
Sbjct: 48 LKNQKVSVQKSTSNPKFQLSETLPLTLQIPQVSLQFAGSGNLTLTLDRGILYQEVNLVVM 107
Query: 68 NVSSGA 73
V+
Sbjct: 108 KVTQPD 113
>2h26_A CD1B antigen, T-cell surface glycoprotein CD1B; lipid, endogenous
ligand, phosphatidylcholine, MHC, antigen presentation,
immune system; HET: NAG FUC 6PL 6UL; 1.80A {Homo
sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 3t8x_A* 1gzq_A*
1gzp_A* 1uqs_A* 3l9r_A*
Length = 286
Score = 28.7 bits (65), Expect = 0.71
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 39 VTAEEAGKYTCRV 51
V EA +CRV
Sbjct: 251 VADGEAAGLSCRV 263
>2xzm_E Ribosomal protein S5 containing protein; ribosome, translation;
3.93A {Tetrahymena thermophila} PDB: 2xzn_E
Length = 296
Score = 28.8 bits (64), Expect = 0.83
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 105 AGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLK 141
A KV G++DI TSS+ T T ++++ T
Sbjct: 181 AAPIPKKVLQFAGVQDIYTSSQGCTRTRGNFLKATYY 217
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 28.6 bits (64), Expect = 0.83
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 28 SNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
S TL +S V AE+ G Y C + + T
Sbjct: 109 SGTDFTLKISRVEAEDLGIYYCVQGSHFPPT 139
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2,
alzheimer'S disease, immunotherapies, APP, immune
system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B*
1h3p_L
Length = 252
Score = 28.5 bits (64), Expect = 0.88
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 28 SNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
S TL +S V AE+ G Y C ++ T
Sbjct: 105 SGTDFTLRISRVEAEDLGVYYCFQASLVPLT 135
>3g08_A T-cell surface glycoprotein CD1D1; antigen presentation,
glycolipid, NKT cells, cell membrane, glycoprotein,
immune response, immunoglobulin domain; HET: NAG FEE
PLM; 1.60A {Mus musculus} PDB: 1z5l_A* 2gaz_A* 2q7y_A*
2akr_A* 3ma7_C* 3o8x_A* 3o9w_A* 3qux_A* 3quy_A* 3quz_A*
3rzc_A* 3t1f_A* 3ta3_A* 3tvm_A* 3ubx_A* 3ilp_A* 3ilq_C*
3rtq_A* 3rug_A* 3ard_A* ...
Length = 285
Score = 28.7 bits (65), Expect = 0.93
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 39 VTAEEAGKYTCRV 51
V A E CRV
Sbjct: 253 VEAGEEAGLACRV 265
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit,
conformation-specific, amyloid, immune system; 1.54A
{Oryctolagus cuniculus}
Length = 213
Score = 28.3 bits (64), Expect = 0.93
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 28 SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
S TL +S + +A Y C+ + E +F
Sbjct: 67 SGTDFTLTISDLECADAATYYCQSTYENPTYVSF 100
>1onq_A T-cell surface glycoprotein CD1A; protein-glycolipid complex, beta
sheet platform,, immune SYS; HET: NAG FUC SLF; 2.15A
{Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 1xz0_A*
Length = 283
Score = 28.4 bits (64), Expect = 0.93
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 39 VTAEEAGKYTCRV 51
V A EA +CRV
Sbjct: 251 VAAGEAADLSCRV 263
>3ov6_A Beta-2-microglobulin, T-cell surface glycoprotein cell surface
glycoprotein CD1B; MHC, immunoglobulin domain, immune
system, antigen presentat; HET: NAG D12 MK0; 2.50A {Homo
sapiens}
Length = 397
Score = 28.8 bits (65), Expect = 0.93
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 39 VTAEEAGKYTCRV 51
V EA +CRV
Sbjct: 369 VADGEAAGLSCRV 381
Score = 27.3 bits (61), Expect = 3.0
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 39 VTAEEAGKYTCRV 51
T E +Y CRV
Sbjct: 73 FTPTEKDEYACRV 85
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV,
immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Length = 264
Score = 28.5 bits (64), Expect = 0.94
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
P+++ T RF S TL + V AE+ Y C+ + Y +T
Sbjct: 54 PKLLISWAFTRKSGVPDRFT-GSGSGTDFTLTIGSVKAEDLAVYYCQQYSNYPWT 107
>3s6c_A Beta-2-microglobulin, T-cell surface glycoprotein
membrane-associated; MHC, immunoglobulin domain, immune
system, antigen presentat glycosylation; HET: NAG FUC;
2.90A {Homo sapiens}
Length = 392
Score = 28.5 bits (64), Expect = 0.99
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 39 VTAEEAGKYTCRV 51
V A EA +CRV
Sbjct: 358 VAAGEAAGLSCRV 370
Score = 26.9 bits (60), Expect = 3.7
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 39 VTAEEAGKYTCRV 51
T E +Y CRV
Sbjct: 70 FTPTEKDEYACRV 82
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid
factor IGG1-FC, immunoglobulin C region, membrane,
glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG
GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 234
Score = 28.5 bits (64), Expect = 0.99
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 6 VIWLRGNTPLPKSSPRFKYIEDSNNLH----TLILSGVTAEEAGKYTCRVSNE-YGYTET 60
V W P+ K + SNN + L L+ + Y+C+V++E +T
Sbjct: 169 VAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT 228
Query: 61 FAR 63
A
Sbjct: 229 VAP 231
Score = 27.4 bits (61), Expect = 2.3
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 28 SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
S +L +SG+ +E+ Y C ++ F
Sbjct: 87 SGTSASLAISGLRSEDEADYYCATWDDSLSAVIF 120
>3huj_A R3G1, T-cell surface glycoprotein CD1D; CD1D,
alpha-galactosylceramide, protein complex, cell
membrane, disulfide bond, endosome; HET: NDG BMA NAG
AGH; 2.50A {Homo sapiens} PDB: 2po6_A* 3u0p_A* 3sdx_A*
1zt4_A* 3tzv_C*
Length = 284
Score = 28.3 bits (64), Expect = 1.00
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 39 VTAEEAGKYTCRV 51
V A EA +CRV
Sbjct: 252 VVAGEAAGLSCRV 264
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody,
virus/viral protein/antibiotic complex; 2.30A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.1
Length = 247
Score = 28.4 bits (64), Expect = 1.0
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 6 VIWLRGNTPLPKSSP-RFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
+I+ + P RF S TL +S + E+ Y C+ + + T
Sbjct: 181 LIY--DASTRATGIPDRFS-GSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPT 231
>3dbx_A CD1-2 antigen; CD1, evolution, antigen-presentation, MHC-fold,
hydrophobic groove, immunoglobulin domain, membrane,
transmembrane; HET: NAG PLM; 2.00A {Gallus gallus}
Length = 289
Score = 28.3 bits (64), Expect = 1.1
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 39 VTAEEAGKYTCRV 51
V+ ++ Y CRV
Sbjct: 257 VSPQDGHGYACRV 269
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus
musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Length = 218
Score = 28.0 bits (63), Expect = 1.1
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 4/58 (6%)
Query: 7 IWLRGNTPLPKSSP-RFKYIEDSNNLHTLILSGVTAEEAGKYTC--RVSNEYGYTETF 61
+ G+ P RF S L +S + E+ Y C + + + F
Sbjct: 50 LKKDGSHSTGDGIPDRFS-GSSSGADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVF 106
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus
musculus}
Length = 233
Score = 28.4 bits (64), Expect = 1.1
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 28 SNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
+ + +E+ Y C S+ YT
Sbjct: 89 YGTDFVFTIENMLSEDVADYYCLQSDNLPYT 119
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen,
beta-turn, immune system; HET: NLE; NMR {Rattus
norvegicus} SCOP: b.1.1.1 b.1.1.1
Length = 257
Score = 28.2 bits (63), Expect = 1.2
Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 15/124 (12%)
Query: 6 VIWLRGNTPLPKSSP-RFKYIED-SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
+W G T + R D S N L ++ + ++ G Y C GY F
Sbjct: 50 RMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWY 109
Query: 64 VDV-------------INVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKP 110
D G + LT+ +++S ++G+ ++ S + + +
Sbjct: 110 FDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNINN 169
Query: 111 KVTW 114
+ W
Sbjct: 170 YLAW 173
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal,
immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP:
b.1.1.2 d.19.1.1
Length = 315
Score = 28.4 bits (64), Expect = 1.2
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 39 VTAEEAGKYTCRV 51
V A E CRV
Sbjct: 250 VEAGEEAGLACRV 262
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function,
NPPSFA, national PROJ protein structural and functional
analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Length = 121
Score = 27.5 bits (61), Expect = 1.2
Identities = 18/119 (15%), Positives = 36/119 (30%), Gaps = 23/119 (19%)
Query: 39 VTAEEAGKYTCRVSNEYGYTETFA----------RVDVINVSSGAVKHEKPAMFLTR--P 86
+ AE+ VS +G + F V+V+ V F+
Sbjct: 5 IPAEDDRGIKSNVSKHFGRSRYFVFVDIEGEDVKNVEVVEVPFEEHGPGDLPNFIKDHGA 64
Query: 87 DTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRATD 145
+++ +G F G I +T +++ + ++ LK D
Sbjct: 65 KIVLTYGIGRRAIEYFNSLG-----------ISVVTGVYGRISDVIKAFIGGKLKIDYD 112
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune
system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A*
3uyp_A* 3uzv_B 1dzb_A
Length = 253
Score = 28.0 bits (63), Expect = 1.3
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
P+++ R + RF S TL ++ V A++ Y C+ SNE +T
Sbjct: 180 PKLLIYRASNLESGIPARFS-GSGSRTDFTLTINPVEADDVATYFCQRSNEVPWT 233
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 27.1 bits (60), Expect = 1.4
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 33 TLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVI 67
L +S V E+ G Y RV E ++V
Sbjct: 74 ALHISNVRKEDKGTYYMRVLRETENELKI-TLEVF 107
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F
membrane, envelope protein, fusion protein, membrane,
trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Length = 280
Score = 28.0 bits (63), Expect = 1.4
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Query: 6 VIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVD 65
+ + + P S RF S N +L ++G+ E+ Y C + F
Sbjct: 187 LSYRNNDRP-SGISERFS-ASRSGNTASLTITGLQPEDEADYYCSTWDSSLSAVVFGGGT 244
Query: 66 VINVSSGAVKHEKPA 80
+ V A
Sbjct: 245 KLTVLGQPKAAPSAA 259
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120,
broadly neutralizing antibody, 3B3 single chain variable
fragment, immune system; 2.50A {Homo sapiens}
Length = 256
Score = 28.1 bits (63), Expect = 1.4
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
P ++ + S RF S TL ++ V E+ Y C+V YT
Sbjct: 193 PRLVIHGVSNRASGISDRFS-GSGSGTDFTLTITRVEPEDFALYYCQVYGASSYT 246
>3jvg_A T-cell surface glycoprotein CD1A1 antigen; CD1, T-cell, lipid,
antigen, transmembrane, disulfide bond, immune response,
immunoglobulin domain, MHC I, polymorphism; HET: UNL
NAG; 2.20A {Gallus gallus}
Length = 281
Score = 28.0 bits (63), Expect = 1.5
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 39 VTAEEAGKYTCRV 51
V+ ++ Y CRV
Sbjct: 249 VSPQDGHGYACRV 261
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion;
2.40A {Homo sapiens}
Length = 184
Score = 27.5 bits (61), Expect = 1.6
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 28 SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET 60
+ L + + AG+Y C N ++
Sbjct: 48 YQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLP 80
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 27.2 bits (60), Expect = 1.7
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 7/81 (8%)
Query: 6 VIWLRGNTPLPKSSPRFKYIED--SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFAR 63
++ G+ K R I+D N T+ + + +A Y C + E +
Sbjct: 49 LVKTSGSEQEVKRD-RVS-IKDNQKNRTFTVTMEDLMKTDADTYWCGI--EKTGNDLGVT 104
Query: 64 VDVINVSSGAVKHEKPAMFLT 84
V V + V E+ + T
Sbjct: 105 VQVT-IDPAPVTQEETSSSPT 124
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 27.6 bits (61), Expect = 1.9
Identities = 5/56 (8%), Positives = 17/56 (30%), Gaps = 3/56 (5%)
Query: 6 VIWLRGNTPLPKS---SPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
W + + + +P + ++ L + + C+V++
Sbjct: 53 FSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA 108
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 1.9
Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 28/91 (30%)
Query: 9 LRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEY-GYTETFARVDVI 67
+R N S+ F+ I D I + E + YT R T+ F
Sbjct: 1684 IRENY----SAMIFETIVDGKLKTEKIFKEIN-EHSTSYTFRSEKGLLSATQ-FT----- 1732
Query: 68 NVSSGAVKHEKPAMFLTRPDTMMSVALGEDI 98
+PA+ L M A ED+
Sbjct: 1733 ----------QPALTL------MEKAAFEDL 1747
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC,
antigen recognition, TCR-PMHC, membrane receptor system;
2.75A {Mus musculus}
Length = 256
Score = 27.8 bits (62), Expect = 1.9
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 6 VIWLRGNTPLPKSSPRFKYIED-SNNLHTLILSGVTAEEAGKYTCRVSNEYGY 57
++ P+ + F+ S++ L + V ++ Y C VS +
Sbjct: 49 LLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDSAVYFCAVSAKGTG 101
Score = 27.4 bits (61), Expect = 1.9
Identities = 8/48 (16%), Positives = 13/48 (27%), Gaps = 1/48 (2%)
Query: 11 GNTPLPKSSP-RFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGY 57
P +K + L L + + Y C S+ G
Sbjct: 188 AGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQ 235
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 27.0 bits (60), Expect = 1.9
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 28 SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSG 72
+ + T+ + + +AG Y C + G + +V V N+
Sbjct: 70 RDFIFTVTMEDLRMSDAGIYWCGI--TKGGLDPMFKVTV-NIGPV 111
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system;
2.88A {Mus musculus}
Length = 291
Score = 27.7 bits (62), Expect = 2.0
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 8 WLRGNTPLPKSSP-RFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
+ + P RF S TL +S V AE+ Y C+ S + YT
Sbjct: 211 LIYWASTRESGVPDRFT-GSGSGTDFTLTISSVQAEDLAVYYCKQSYYHMYT 261
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system;
3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 242
Score = 27.6 bits (62), Expect = 2.0
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 10/87 (11%)
Query: 7 IWLRGNTPLPKSSPRFKYI---EDSNNLHTLILSGVTAEEAGKYTC-RVSNEYGYTETFA 62
I G P K+ + TL + V ++ Y C + +
Sbjct: 52 ISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQDIATYYCALWEAQQELGKKIK 111
Query: 63 ------RVDVINVSSGAVKHEKPAMFL 83
++ + + A KP +FL
Sbjct: 112 VFGPGTKLIITDKQLDADVSPKPTIFL 138
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 27.2 bits (60), Expect = 2.2
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 6 VIWLRGNTPLPKSSPRFKYIEDSNNL----HTLILSGVTAEEAGKYTCRVSNEYGYT 58
+ W N + + + + ED N+ TL + ++ C+V+N+ +
Sbjct: 47 ISWFVNNVEVHTAQTQ-THREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPS 102
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;
anti-CD3epsilon, T-cell receptor, signalling, IMMU;
2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B
3ldb_B*
Length = 213
Score = 27.2 bits (61), Expect = 2.2
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 28 SNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
S + +S + +E+ G Y C+ Y +T
Sbjct: 67 SGRDSSFTISSLESEDIGSYYCQQYYNYPWT 97
>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin,
CD277, immune system; HET: NAG; 3.14A {Mus musculus}
Length = 259
Score = 27.3 bits (61), Expect = 2.3
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
P+++ R + RF S TL +S + E+ Y C+ + Y YT
Sbjct: 44 PKLLIYRASNLHTGVPSRFS-GSGSATGFTLTISSLQPEDIATYYCQQGHSYPYT 97
>1yjd_C TP44, T-cell-specific surface glycoprotein CD28; IGSF, CD28
homodimer, immune system-signaling protein comple; HET:
NAG; 2.70A {Homo sapiens} SCOP: b.1.1.1
Length = 140
Score = 27.0 bits (59), Expect = 2.4
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 28 SNNLHTLILSGVTAEEAGKYTCRVSNEY 55
N T L + + Y C++ Y
Sbjct: 75 GNESVTFYLQNLYVNQTDIYFCKIEVMY 102
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer,
SCFV, variable domain, immune system; 2.60A {Mus
musculus} SCOP: b.1.1.1 b.1.1.1
Length = 240
Score = 27.3 bits (61), Expect = 2.5
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
P+++ R + RF S TLI+ V A++ Y C+ +NE YT
Sbjct: 48 PKLLIYRASNLESGIPVRFS-GTGSRTDFTLIIDPVEADDVATYYCQQTNEDPYT 101
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 27.2 bits (59), Expect = 2.5
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 8 WLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYG 56
WL+G K + + + T +AGKY C + E G
Sbjct: 199 WLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGG 247
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 26.2 bits (58), Expect = 2.6
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 23 KYIEDSNNLHTLILSGVTAEEAGKYTC--RVSNEYGYTE 59
K + + + E+AG Y C +VS +
Sbjct: 47 KEKDKEQDAAEFSFAVTNLEDAGTYQCRYQVSEPLWTSN 85
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, cell membrane, glycoprotein;
1.80A {Homo sapiens} PDB: 3rp1_A
Length = 106
Score = 26.2 bits (58), Expect = 2.7
Identities = 7/52 (13%), Positives = 12/52 (23%)
Query: 5 EVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYG 56
R + + S + + V+ AG Y C
Sbjct: 38 TFRLERESRSTYNDTEDVSQASPSESEARFRIDSVSEGNAGPYRCIYYKPPK 89
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme,
antigen, allergen, antimic bacteriolytic enzyme,
glycosidase, hydrolase; 1.20A {Mus musculus} PDB:
3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A
1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L
1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Length = 213
Score = 26.8 bits (60), Expect = 3.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 28 SNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
S TL ++ V E+ G Y C+ SN + YT
Sbjct: 67 SGTDFTLSINSVETEDFGMYFCQQSNSWPYT 97
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 26.9 bits (59), Expect = 3.2
Identities = 26/142 (18%), Positives = 44/142 (30%), Gaps = 15/142 (10%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEY---GYTET 60
PE + + + ED + TLIL T +A Y C + T
Sbjct: 43 PEYVIHGLTSNVNNRMASLAIAEDRKSS-TLILHRATLRDAAVYYCILPLAGGTSYGKLT 101
Query: 61 FARVDVINVSSGAVKHEKPAMFLTRP--DTMMSVALGEDISFSFRLAGSPKPKVTWMKGI 118
F + ++ V + PA++ R + SV L D + V+ K
Sbjct: 102 FGQGTILTVHPNIQNPD-PAVYQLRDSKSSDKSVCLFTDF--------DSQTNVSQSKDS 152
Query: 119 KDITTSSRTMTETVNDYVRLTL 140
T + D+ +
Sbjct: 153 DVYITDKTVLDMRSMDFKSNSA 174
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 26.8 bits (59), Expect = 3.7
Identities = 24/127 (18%), Positives = 40/127 (31%), Gaps = 8/127 (6%)
Query: 26 EDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKHEKPAMFLT- 84
D + +S +T + AG Y C S + + A D +++ + L+
Sbjct: 57 HDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIV---IIGLYEKPSLSA 113
Query: 85 RPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYVRLTLKRAT 144
+P V GE+++ S S +G L AT
Sbjct: 114 QPGPT--VLAGENVTLSCSSRSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT 171
Query: 145 DDENGTY 151
GTY
Sbjct: 172 H--GGTY 176
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick
filament, immune system, cell adhesion; NMR {Mus
musculus}
Length = 142
Score = 26.1 bits (57), Expect = 3.9
Identities = 6/57 (10%), Positives = 23/57 (40%)
Query: 4 PEVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTET 60
+V ++ + + +I+ + + + + + E+ G YT ++ + +
Sbjct: 68 AKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQIQDGKATGHS 124
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 26.1 bits (57), Expect = 4.0
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 21 RFKYIEDSNNLH-TLILSGVTAEEAGKYTCRVSNE---YGYTETFARVDVI 67
RF + D + TL + +AG+Y R+ + Y V+V
Sbjct: 76 RFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVT 126
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex
(immunorece immunoglobulin) complex; HET: NAG NDG;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 212
Score = 26.5 bits (59), Expect = 4.0
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 28 SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
S TL +SG E+ Y C S F
Sbjct: 65 SGTTATLTISGAQPEDEAAYYCLSSYGDNNDLVF 98
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 26.5 bits (58), Expect = 4.1
Identities = 23/148 (15%), Positives = 41/148 (27%), Gaps = 9/148 (6%)
Query: 5 EVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARV 64
+ R + D + + + + AG Y C S + + A
Sbjct: 36 HFLLHREGKFKD-TLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPS 94
Query: 65 DVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMK-GIKDITT 123
D +++ + L+ +V GE ++ S + S + G
Sbjct: 95 DPLDIV---ITGLYEKPSLS-AQPGPTVLAGESVTLSCS-SRSSYDMYHLSREGEAHERR 149
Query: 124 SSRTMTETVNDYVRLTLKRATDDENGTY 151
S L AT GTY
Sbjct: 150 FSAGPKVNGTFQADFPLGPATH--GGTY 175
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 26.0 bits (57), Expect = 4.1
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 12/73 (16%)
Query: 1 YVKPEVIWLRGN---------TPLPKSSPRFKY-IED--SNNLHTLILSGVTAEEAGKYT 48
VK + +W R + + + +P + L + + + E+AG+Y
Sbjct: 25 DVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDLGGGLLQVEMVTLQEEDAGEYG 84
Query: 49 CRVSNEYGYTETF 61
C V G
Sbjct: 85 CMVDGARGPQILH 97
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN,
beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis}
SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Length = 338
Score = 26.7 bits (60), Expect = 4.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 64 VDVINVSSGAVKHEKP 79
VD+I+ SSGA+ H
Sbjct: 243 VDLIDCSSGALVHADI 258
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd reductase,
NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2
PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A*
2vuu_A*
Length = 352
Score = 26.7 bits (59), Expect = 4.7
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 81 MFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDI 121
F + P + + L D +F + P + W+ D+
Sbjct: 156 NFTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDV 196
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 26.1 bits (57), Expect = 4.9
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 17 KSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
SS F + D+NN + L L+ + E G Y C V +
Sbjct: 75 NSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMY 116
>2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha,
immunoglobulin superfamily, transmembrane,
phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo
sapiens} PDB: 2jjt_C* 2vsc_A*
Length = 127
Score = 25.9 bits (56), Expect = 5.3
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 33 TLILSGVTA-EEAGKYTCRVSNEYGYTETFARVDVINVS 70
+L + A G YTC V+ ET + VS
Sbjct: 79 SLKMDKSDAVSHTGNYTCEVTELTREGETIIELKYRVVS 117
>3sob_L Antibody light chain; beta propeller, protein binding-immune system
complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Length = 237
Score = 26.0 bits (58), Expect = 5.3
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 28 SNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
S TL +S + E+ Y C+ S T
Sbjct: 90 SGTDFTLTISSLQPEDFATYYCQQSYTTPPT 120
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A
{Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A
1c5d_L 1bfo_A 3b9k_L*
Length = 210
Score = 26.0 bits (58), Expect = 5.4
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 28 SNNLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
S TL + V A++ Y C+ S T
Sbjct: 66 SGTDFTLTIDPVEADDTAIYFCQQSWNGPLT 96
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, extra celluar domain, domain
swappin nysgrc, structural genomics; 1.90A {Mus
musculus}
Length = 118
Score = 25.5 bits (56), Expect = 5.5
Identities = 8/37 (21%), Positives = 12/37 (32%)
Query: 23 KYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTE 59
K E + V G Y+C S ++E
Sbjct: 54 KSTEPYKTEDEFEIGPVNETITGHYSCIYSKGITWSE 90
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 26.2 bits (57), Expect = 5.6
Identities = 24/154 (15%), Positives = 46/154 (29%), Gaps = 19/154 (12%)
Query: 6 VIWLRGNTPLPKSS---PRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTE-TF 61
+I + L + RF SN+ +L + A ++ Y C S + F
Sbjct: 72 LINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYF 131
Query: 62 ARVDVINVSSGAVKHEKPAMFLTRPDTMMSVALGEDISFSFR-LAGSPKP---KVTWMKG 117
+ V P + + P + + LA P +++W
Sbjct: 132 GPGTRLLVLEDLKNVFPPEVAVFEP---SEAEISHTQKATLVCLATGFYPDHVELSWWVN 188
Query: 118 IKDITTSSRTMTETVNDYVRLTLKRATDDENGTY 151
K++ + T + LK + Y
Sbjct: 189 GKEVHSGVCTDPQ--------PLKEQPALNDSRY 214
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 25.4 bits (56), Expect = 5.8
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 33 TLILSGVTAEEAGKYTCRVSNEYGYTETFARVD--------VINVSSGAVKH 76
+L ++ +T +++G Y C+ + YG + V+ V++ A H
Sbjct: 67 SLRINDLTVKDSGTYRCKPESRYGSYDAVCAALNDQYGGGTVVTVNAAAHHH 118
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of
dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN;
1.60A {Thermoanaerobacter pseudethanolicus AT} PDB:
3krz_A*
Length = 343
Score = 26.3 bits (59), Expect = 6.0
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 64 VDVINVSSGAVKHEKP 79
VD+I+VSSG + +
Sbjct: 243 VDLIDVSSGGLLNVDI 258
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1;
immunoglobulin-like folds, immune system; 1.80A {Homo
sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A
1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 26.0 bits (57), Expect = 6.0
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 5 EVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNE 54
E R P + + ++ + +T E G+Y C ++
Sbjct: 34 EYRLYREKKTAPWIT---RIPQELVKKGQFPIPSITWEHTGRYRCYYGSD 80
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2,
immune system; 2.10A {Orectolobus maculatus}
Length = 108
Score = 25.3 bits (56), Expect = 6.2
Identities = 6/37 (16%), Positives = 14/37 (37%)
Query: 28 SNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARV 64
+N +L + + E++G Y C+ +
Sbjct: 62 GSNSASLTIRDLRVEDSGTYKCKAYRRCAFNTGVGYK 98
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel,
oxidoreductase, flavoprotein; HET: FMN; 2.30A
{Geobacillus kaustophilus} PDB: 3gr8_A*
Length = 340
Score = 26.0 bits (58), Expect = 6.6
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 64 VDVINVSSGAVKHEKP 79
VD+++VSSGA+ +
Sbjct: 243 VDLVDVSSGAIVPARM 258
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm,
mouse IGG, zinc-finger, DNA-binding, RNA-binding,
tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC;
1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 26.0 bits (57), Expect = 7.0
Identities = 5/56 (8%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 6 VIWLRGNTPLPKSSPRFKYIEDSN---NLHTLILSGVTAEEAGKYTCRVSNEYGYT 58
W + + + + + + ++ ++ L + ++ CRV++
Sbjct: 39 FSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA 94
>3a98_B Engulfment and cell motility protein 1; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Length = 203
Score = 25.8 bits (56), Expect = 7.2
Identities = 16/123 (13%), Positives = 29/123 (23%), Gaps = 1/123 (0%)
Query: 17 KSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETFARVDVINVSSGAVKH 76
+ +F Y S N L + G+ + V +
Sbjct: 45 RRQDKFWYCRLSPNHKVLHYGDLEESPQGEVPHDSLQDKLPVADIKAVVTGKDCPHMKEK 104
Query: 77 EKPAMFLTRPDTMMSVALGEDISFSFRLAGSPKPKVTWMKGIKDITTSSRTMTETVNDYV 136
+ S+ + +F +A W G+ + T ND
Sbjct: 105 GALKQNKEVLELAFSILYDSNCQLNF-IAPDKHEYCIWTDGLNALLGKDMMSDLTRNDLD 163
Query: 137 RLT 139
L
Sbjct: 164 TLL 166
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen
complex, HIV inhibiting antibody; 1.89A {Mus musculus}
PDB: 1jp5_A
Length = 247
Score = 25.7 bits (57), Expect = 7.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 33 TLILSGVTAEEAGKYTCRVSNEYGYT 58
TL +S V AE+ G Y C + + T
Sbjct: 77 TLKISRVEAEDLGIYYCFQGSHFPPT 102
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, domain swapping, collagen
receptor, structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 25.0 bits (55), Expect = 8.1
Identities = 8/37 (21%), Positives = 12/37 (32%)
Query: 23 KYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTE 59
K E + V G Y+C S ++E
Sbjct: 54 KSTEPYKTEDEFEIGPVNETITGHYSCIYSKGITWSE 90
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A
{Sulfolobus tokodaii}
Length = 522
Score = 26.0 bits (58), Expect = 8.4
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 74 VKHEKPAMFLTRPDTMMSVALGEDISF 100
+K + MF+T P+ V LGE++SF
Sbjct: 191 IKGDAYYMFVTGPEITKVV-LGEEVSF 216
>2bc4_A HLA class II histocompatibility antigen, DM alpha chain; MHC class
II, immune system; HET: NDG BMA; 2.27A {Homo sapiens}
PDB: 1hdm_A 1k8i_A*
Length = 211
Score = 25.5 bits (55), Expect = 8.8
Identities = 10/47 (21%), Positives = 16/47 (34%)
Query: 5 EVIWLRGNTPLPKSSPRFKYIEDSNNLHTLILSGVTAEEAGKYTCRV 51
V W + P+ P F D + T E + ++C V
Sbjct: 132 TVNWQHHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIV 178
>3ux9_B SCFV antibody; five helices, long loop connecting helix,
hydrophobic intera cytokine-immune system complex; 2.80A
{Homo sapiens}
Length = 256
Score = 25.7 bits (57), Expect = 9.1
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 3 KPEVIWLRGNTPLPKSSP-RFKYIEDSNNLHTLILSGVTAEEAGKYTCRVSNEYGYTETF 61
+ + N P P RF S +L ++G+ +E+ Y C+V + F
Sbjct: 45 TAPKLLIYDNNQRPSGVPDRFS-GSKSGTSASLAITGLQSEDEADYYCQVRDNNENEWVF 103
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.384
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,563,813
Number of extensions: 145898
Number of successful extensions: 1579
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1017
Number of HSP's successfully gapped: 591
Length of query: 168
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 81
Effective length of database: 4,272,666
Effective search space: 346085946
Effective search space used: 346085946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.6 bits)