Query psy1686
Match_columns 448
No_of_seqs 333 out of 1725
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 23:53:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1686.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1686hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2680|consensus 100.0 1.3E-89 2.8E-94 674.0 24.2 329 2-331 1-450 (454)
2 COG1224 TIP49 DNA helicase TIP 100.0 3.7E-82 8E-87 632.6 23.9 313 13-328 11-450 (450)
3 KOG1942|consensus 100.0 2.7E-77 5.7E-82 585.8 18.9 321 5-328 2-456 (456)
4 PF06068 TIP49: TIP49 C-termin 100.0 5.1E-77 1.1E-81 602.6 16.3 268 18-288 1-397 (398)
5 COG2256 MGS1 ATPase related to 100.0 1.6E-43 3.5E-48 360.0 15.6 210 28-308 12-236 (436)
6 KOG2028|consensus 100.0 2.2E-39 4.8E-44 325.8 14.3 224 25-313 123-374 (554)
7 COG2812 DnaX DNA polymerase II 100.0 6.2E-39 1.3E-43 339.5 15.2 228 29-308 5-242 (515)
8 PRK14956 DNA polymerase III su 100.0 2.4E-34 5.3E-39 302.7 15.4 340 28-440 6-362 (484)
9 PRK14958 DNA polymerase III su 100.0 4.3E-32 9.4E-37 289.5 15.2 229 28-308 4-242 (509)
10 PRK07994 DNA polymerase III su 100.0 8.5E-32 1.8E-36 292.6 16.6 230 28-309 4-243 (647)
11 PRK07003 DNA polymerase III su 100.0 5E-32 1.1E-36 295.4 14.2 230 28-309 4-243 (830)
12 COG1224 TIP49 DNA helicase TIP 100.0 1.2E-32 2.7E-37 276.7 3.3 105 339-443 215-331 (450)
13 PRK14960 DNA polymerase III su 100.0 6.8E-31 1.5E-35 283.9 16.7 229 28-308 3-241 (702)
14 PRK14964 DNA polymerase III su 100.0 8.5E-31 1.8E-35 277.6 16.3 228 29-308 2-239 (491)
15 PF06068 TIP49: TIP49 C-termin 100.0 1.6E-32 3.5E-37 278.9 2.2 106 339-444 198-319 (398)
16 PRK14952 DNA polymerase III su 100.0 4.5E-30 9.8E-35 277.2 19.3 229 30-309 3-243 (584)
17 PRK12323 DNA polymerase III su 100.0 1.5E-30 3.2E-35 280.8 15.2 234 28-309 4-248 (700)
18 PRK14949 DNA polymerase III su 100.0 3.3E-30 7.2E-35 285.3 16.8 229 28-308 4-242 (944)
19 PRK14951 DNA polymerase III su 100.0 3.8E-30 8.3E-35 279.0 16.5 234 28-309 4-248 (618)
20 PRK06645 DNA polymerase III su 100.0 6.7E-30 1.5E-34 272.1 17.1 236 28-308 9-254 (507)
21 KOG1942|consensus 100.0 2.8E-31 6E-36 261.6 5.5 105 339-443 213-336 (456)
22 PRK14965 DNA polymerase III su 100.0 5.1E-30 1.1E-34 277.3 14.5 310 28-408 4-324 (576)
23 PRK05563 DNA polymerase III su 100.0 2.6E-29 5.6E-34 271.0 17.3 308 28-407 4-322 (559)
24 PRK14957 DNA polymerase III su 100.0 4.9E-29 1.1E-33 267.3 15.8 229 28-308 4-242 (546)
25 KOG2680|consensus 100.0 2.5E-30 5.5E-35 255.4 4.6 101 343-443 216-328 (454)
26 PF05496 RuvB_N: Holliday junc 100.0 1.3E-29 2.9E-34 243.7 6.9 201 26-290 10-229 (233)
27 PRK14961 DNA polymerase III su 100.0 2.7E-28 5.9E-33 250.2 16.7 229 28-308 4-242 (363)
28 PRK07764 DNA polymerase III su 100.0 3.2E-28 6.9E-33 271.5 18.1 231 28-309 3-245 (824)
29 PRK08691 DNA polymerase III su 100.0 3.3E-28 7.1E-33 264.8 17.3 230 28-309 4-243 (709)
30 PRK14969 DNA polymerase III su 100.0 4.6E-28 9.9E-33 259.7 16.4 229 28-308 4-242 (527)
31 PRK14959 DNA polymerase III su 100.0 1.2E-27 2.7E-32 258.7 19.2 311 28-408 4-325 (624)
32 PRK08451 DNA polymerase III su 99.9 2.1E-27 4.5E-32 253.9 17.6 228 29-308 3-240 (535)
33 PRK09111 DNA polymerase III su 99.9 5.3E-27 1.2E-31 254.3 16.9 233 28-308 12-255 (598)
34 PRK14962 DNA polymerase III su 99.9 2.4E-27 5.2E-32 251.0 13.7 228 29-308 3-240 (472)
35 PRK07133 DNA polymerase III su 99.9 4.5E-27 9.7E-32 257.6 15.6 228 28-308 6-241 (725)
36 PRK05896 DNA polymerase III su 99.9 1.3E-26 2.8E-31 249.8 15.8 229 28-308 4-242 (605)
37 PRK06647 DNA polymerase III su 99.9 7.5E-27 1.6E-31 251.8 13.7 229 28-308 4-242 (563)
38 PRK14953 DNA polymerase III su 99.9 1.8E-26 3.9E-31 245.2 15.4 229 28-308 4-242 (486)
39 PRK14971 DNA polymerase III su 99.9 3.6E-26 7.8E-31 248.8 17.0 311 30-408 7-325 (614)
40 PRK14954 DNA polymerase III su 99.9 7.7E-26 1.7E-30 245.9 18.9 236 29-308 5-255 (620)
41 PRK14955 DNA polymerase III su 99.9 2E-25 4.3E-30 231.7 18.8 316 29-408 5-336 (397)
42 PRK13341 recombination factor 99.9 1.3E-25 2.8E-30 247.9 17.7 218 24-308 12-245 (725)
43 PRK13342 recombination factor 99.9 2.3E-25 5E-30 232.1 16.7 208 29-309 1-218 (413)
44 PRK14963 DNA polymerase III su 99.9 2.4E-24 5.3E-29 229.8 16.7 226 29-308 3-238 (504)
45 PRK14950 DNA polymerase III su 99.9 6.1E-24 1.3E-28 230.5 17.8 230 30-308 6-243 (585)
46 PRK06305 DNA polymerase III su 99.9 2.1E-23 4.6E-28 220.0 16.7 229 29-308 6-244 (451)
47 COG2255 RuvB Holliday junction 99.9 2.9E-23 6.3E-28 204.5 15.5 217 30-310 16-251 (332)
48 PRK14948 DNA polymerase III su 99.9 2.8E-23 6.1E-28 226.4 15.2 229 29-308 5-243 (620)
49 PLN03025 replication factor C 99.9 1.1E-22 2.4E-27 204.9 16.9 213 28-308 1-221 (319)
50 TIGR02397 dnaX_nterm DNA polym 99.9 1.3E-21 2.8E-26 197.5 17.5 308 29-408 3-320 (355)
51 KOG0989|consensus 99.9 2.9E-21 6.3E-26 191.9 17.4 204 30-299 26-242 (346)
52 PRK14970 DNA polymerase III su 99.9 1.6E-20 3.4E-25 192.1 19.1 306 28-414 5-318 (367)
53 PRK07940 DNA polymerase III su 99.8 2.8E-20 6E-25 193.4 13.0 199 39-284 3-215 (394)
54 PRK09112 DNA polymerase III su 99.8 1.6E-19 3.4E-24 185.2 15.5 218 33-286 16-244 (351)
55 PRK07471 DNA polymerase III su 99.8 9.9E-19 2.1E-23 180.2 14.7 223 34-285 13-241 (365)
56 PRK00080 ruvB Holliday junctio 99.8 8.2E-18 1.8E-22 170.1 17.8 218 31-310 16-250 (328)
57 PRK07399 DNA polymerase III su 99.8 7.9E-18 1.7E-22 170.3 16.8 208 40-286 3-225 (314)
58 TIGR02902 spore_lonB ATP-depen 99.8 4.4E-18 9.5E-23 183.1 15.4 248 28-308 53-330 (531)
59 PRK08058 DNA polymerase III su 99.8 2.2E-18 4.8E-23 175.0 12.2 198 40-285 4-207 (329)
60 PRK00440 rfc replication facto 99.8 2.4E-17 5.2E-22 163.5 17.5 212 28-308 5-224 (319)
61 PRK14700 recombination factor 99.7 3.8E-18 8.3E-23 170.2 9.6 96 211-308 5-113 (300)
62 PRK05707 DNA polymerase III su 99.7 2.4E-17 5.2E-22 167.8 13.1 188 55-284 11-205 (328)
63 TIGR00635 ruvB Holliday juncti 99.7 1.3E-16 2.9E-21 158.5 17.0 131 176-309 82-228 (305)
64 PRK06871 DNA polymerase III su 99.7 5.3E-17 1.2E-21 165.0 13.8 192 54-285 12-206 (325)
65 PRK05564 DNA polymerase III su 99.7 4.9E-17 1.1E-21 163.4 13.4 187 40-285 3-193 (313)
66 TIGR00678 holB DNA polymerase 99.7 3E-17 6.4E-22 152.8 11.0 182 55-279 3-188 (188)
67 PRK12402 replication factor C 99.7 3.7E-16 8.1E-21 156.4 17.2 232 31-308 6-247 (337)
68 PRK04132 replication factor C 99.7 1.2E-16 2.5E-21 178.8 14.3 135 153-308 611-752 (846)
69 KOG0991|consensus 99.7 1.5E-16 3.2E-21 153.8 12.0 228 27-322 14-263 (333)
70 PRK07993 DNA polymerase III su 99.7 1.6E-16 3.5E-21 162.1 11.8 193 54-285 12-207 (334)
71 PHA02544 44 clamp loader, smal 99.7 2.5E-15 5.3E-20 150.1 16.9 205 27-307 8-228 (316)
72 PRK08084 DNA replication initi 99.6 3.5E-15 7.5E-20 144.8 15.5 207 27-308 8-234 (235)
73 TIGR02903 spore_lon_C ATP-depe 99.6 3.4E-15 7.3E-20 163.4 16.8 247 28-308 142-428 (615)
74 PRK04195 replication factor C 99.6 5.6E-15 1.2E-19 157.2 17.2 205 29-307 3-222 (482)
75 PRK08769 DNA polymerase III su 99.6 2.3E-15 4.9E-20 152.8 10.7 194 54-284 14-210 (319)
76 PRK06090 DNA polymerase III su 99.6 2.9E-15 6.2E-20 152.0 10.7 188 54-284 13-203 (319)
77 PRK07276 DNA polymerase III su 99.6 5.6E-15 1.2E-19 148.1 12.6 192 45-284 6-199 (290)
78 PF13177 DNA_pol3_delta2: DNA 99.6 1.4E-15 3E-20 139.9 6.0 158 45-246 1-162 (162)
79 TIGR02881 spore_V_K stage V sp 99.6 1.4E-14 2.9E-19 142.2 12.4 106 176-289 106-237 (261)
80 PTZ00112 origin recognition co 99.6 4.3E-14 9.4E-19 156.7 17.5 147 177-332 871-1030(1164)
81 TIGR02639 ClpA ATP-dependent C 99.6 9.5E-15 2.1E-19 162.7 12.5 225 27-311 169-430 (731)
82 PRK06620 hypothetical protein; 99.6 1.2E-13 2.7E-18 132.6 18.2 117 177-307 87-213 (214)
83 PRK06893 DNA replication initi 99.6 7.3E-14 1.6E-18 134.9 16.2 209 28-308 3-228 (229)
84 PRK00411 cdc6 cell division co 99.6 9.3E-14 2E-18 142.7 17.4 146 176-330 139-304 (394)
85 TIGR02928 orc1/cdc6 family rep 99.5 2.5E-13 5.5E-18 138.0 18.3 146 176-330 130-296 (365)
86 TIGR00602 rad24 checkpoint pro 99.5 5.9E-14 1.3E-18 153.5 14.5 247 28-307 72-352 (637)
87 PRK06964 DNA polymerase III su 99.5 5E-14 1.1E-18 144.3 10.6 194 62-284 17-227 (342)
88 TIGR03345 VI_ClpV1 type VI sec 99.5 8.1E-14 1.7E-18 157.5 12.9 221 27-306 174-427 (852)
89 COG0470 HolB ATPase involved i 99.5 6.5E-14 1.4E-18 138.9 9.4 202 41-288 1-205 (325)
90 PRK08485 DNA polymerase III su 99.5 9E-14 2E-18 132.0 9.3 116 153-289 40-174 (206)
91 PRK05917 DNA polymerase III su 99.4 6.5E-13 1.4E-17 133.1 10.6 166 54-277 7-176 (290)
92 PRK08727 hypothetical protein; 99.4 1.1E-11 2.4E-16 120.1 18.8 117 177-308 95-229 (233)
93 PRK05642 DNA replication initi 99.4 5.9E-12 1.3E-16 122.2 16.7 119 177-308 99-233 (234)
94 PRK05818 DNA polymerase III su 99.4 1.2E-12 2.5E-17 129.3 11.8 141 111-285 39-193 (261)
95 KOG0990|consensus 99.3 1.8E-11 3.8E-16 123.2 14.9 228 22-308 23-258 (360)
96 PRK08699 DNA polymerase III su 99.3 5.3E-12 1.1E-16 128.6 10.3 180 62-277 17-201 (325)
97 PRK09087 hypothetical protein; 99.3 4E-11 8.6E-16 116.2 15.1 121 177-310 89-222 (226)
98 PRK07132 DNA polymerase III su 99.3 1.9E-11 4E-16 123.3 12.8 114 153-284 72-186 (299)
99 CHL00181 cbbX CbbX; Provisiona 99.3 2.7E-11 5.9E-16 121.3 13.7 107 176-289 123-253 (287)
100 COG1474 CDC6 Cdc6-related prot 99.3 9.5E-11 2.1E-15 121.3 16.0 146 176-330 124-287 (366)
101 KOG2035|consensus 99.3 8.2E-11 1.8E-15 116.6 14.1 217 32-289 5-235 (351)
102 PRK08903 DnaA regulatory inact 99.2 2.4E-10 5.2E-15 109.4 15.8 121 176-308 91-224 (227)
103 TIGR02880 cbbX_cfxQ probable R 99.2 9.2E-11 2E-15 117.2 12.3 107 176-289 122-252 (284)
104 CHL00081 chlI Mg-protoporyphyr 99.2 2E-10 4.2E-15 118.2 14.9 133 176-310 145-322 (350)
105 TIGR03346 chaperone_ClpB ATP-d 99.2 4.8E-11 1E-15 135.3 9.3 205 27-290 160-396 (852)
106 TIGR03420 DnaA_homol_Hda DnaA 99.2 7.8E-10 1.7E-14 104.8 15.7 120 177-307 92-225 (226)
107 PRK10865 protein disaggregatio 99.2 2.1E-10 4.5E-15 130.2 12.7 204 27-289 165-400 (857)
108 PRK00149 dnaA chromosomal repl 99.2 4.8E-10 1E-14 118.5 14.7 120 176-310 212-349 (450)
109 TIGR01241 FtsH_fam ATP-depende 99.0 4.5E-09 9.7E-14 112.5 16.6 214 35-310 49-295 (495)
110 TIGR02030 BchI-ChlI magnesium 99.0 3.7E-09 8E-14 108.4 14.6 133 176-310 132-309 (337)
111 PRK10787 DNA-binding ATP-depen 99.0 2.8E-09 6E-14 120.0 14.9 225 38-308 318-580 (784)
112 TIGR03015 pepcterm_ATPase puta 99.0 2.1E-08 4.6E-13 97.5 18.8 145 154-309 106-265 (269)
113 TIGR00763 lon ATP-dependent pr 99.0 2.4E-09 5.3E-14 120.4 13.6 222 40-308 319-584 (775)
114 CHL00176 ftsH cell division pr 99.0 5.4E-09 1.2E-13 115.2 15.2 219 35-310 177-423 (638)
115 PRK06581 DNA polymerase III su 99.0 3.3E-09 7.2E-14 103.9 11.7 117 153-287 72-192 (263)
116 COG1223 Predicted ATPase (AAA+ 99.0 4.8E-09 1E-13 103.6 12.4 216 34-309 114-354 (368)
117 TIGR02442 Cob-chelat-sub cobal 99.0 1.5E-08 3.2E-13 111.9 17.3 135 175-311 126-305 (633)
118 PRK13407 bchI magnesium chelat 98.9 2.9E-08 6.2E-13 101.8 16.9 132 176-309 129-305 (334)
119 TIGR00362 DnaA chromosomal rep 98.9 1.9E-08 4E-13 104.9 15.9 122 177-310 201-337 (405)
120 PRK05342 clpX ATP-dependent pr 98.9 9.7E-09 2.1E-13 108.0 13.0 112 175-286 173-374 (412)
121 PRK12422 chromosomal replicati 98.9 3.3E-08 7.1E-13 104.9 16.5 123 176-310 203-343 (445)
122 CHL00095 clpC Clp protease ATP 98.9 7.9E-09 1.7E-13 117.0 11.5 120 149-289 254-400 (821)
123 PRK11034 clpA ATP-dependent Cl 98.9 3E-08 6.5E-13 111.3 14.7 123 176-309 279-432 (758)
124 PRK03992 proteasome-activating 98.9 6.1E-08 1.3E-12 101.0 15.9 123 176-310 225-372 (389)
125 PRK14087 dnaA chromosomal repl 98.8 6E-08 1.3E-12 103.0 15.8 123 176-309 207-347 (450)
126 CHL00095 clpC Clp protease ATP 98.8 3.5E-08 7.6E-13 111.8 13.7 96 176-271 612-760 (821)
127 TIGR03345 VI_ClpV1 type VI sec 98.7 8.3E-08 1.8E-12 109.2 14.0 111 176-287 669-827 (852)
128 PRK13531 regulatory ATPase Rav 98.7 3.1E-07 6.7E-12 98.2 17.3 116 177-308 109-281 (498)
129 PRK14088 dnaA chromosomal repl 98.7 1.3E-07 2.9E-12 100.1 14.3 121 176-310 195-332 (440)
130 TIGR01242 26Sp45 26S proteasom 98.7 2.7E-07 5.9E-12 95.0 15.5 123 175-309 215-362 (364)
131 PTZ00454 26S protease regulato 98.7 4.4E-07 9.5E-12 95.2 16.0 125 175-311 238-387 (398)
132 PRK11034 clpA ATP-dependent Cl 98.7 1.3E-07 2.8E-12 106.2 12.4 96 176-271 558-694 (758)
133 PTZ00361 26 proteosome regulat 98.7 2E-07 4.2E-12 98.9 12.9 124 175-310 276-424 (438)
134 CHL00195 ycf46 Ycf46; Provisio 98.7 6.4E-07 1.4E-11 96.2 16.7 221 29-311 216-464 (489)
135 COG0593 DnaA ATPase involved i 98.6 4.9E-07 1.1E-11 94.8 14.9 226 23-310 69-313 (408)
136 TIGR02639 ClpA ATP-dependent C 98.6 2.7E-07 5.8E-12 103.5 13.7 96 176-271 554-690 (731)
137 TIGR00382 clpX endopeptidase C 98.6 4.5E-07 9.7E-12 95.5 14.1 112 175-287 181-381 (413)
138 PF00308 Bac_DnaA: Bacterial d 98.6 4.7E-07 1E-11 87.3 11.1 106 176-290 98-216 (219)
139 PRK14086 dnaA chromosomal repl 98.6 1.1E-06 2.3E-11 96.4 14.8 123 176-310 378-515 (617)
140 TIGR03346 chaperone_ClpB ATP-d 98.5 6.7E-07 1.5E-11 101.9 13.6 111 177-287 669-822 (852)
141 TIGR01243 CDC48 AAA family ATP 98.5 1.5E-06 3.2E-11 97.5 16.1 207 36-309 448-709 (733)
142 PRK10865 protein disaggregatio 98.5 1.5E-06 3.3E-11 99.1 14.8 96 176-271 671-807 (857)
143 KOG1514|consensus 98.3 4.7E-06 1E-10 91.5 12.8 148 175-329 508-676 (767)
144 COG1222 RPT1 ATP-dependent 26S 98.3 8.8E-06 1.9E-10 83.7 13.4 122 176-311 245-393 (406)
145 PRK10733 hflB ATP-dependent me 98.3 1E-05 2.3E-10 89.7 14.6 210 37-309 148-391 (644)
146 TIGR01128 holA DNA polymerase 98.2 1.3E-05 2.8E-10 79.3 12.5 122 176-308 47-176 (302)
147 TIGR01817 nifA Nif-specific re 98.2 1.3E-05 2.8E-10 86.8 13.1 123 176-304 291-439 (534)
148 COG1239 ChlI Mg-chelatase subu 98.2 1.4E-05 2.9E-10 83.8 12.5 135 175-310 144-322 (423)
149 KOG0734|consensus 98.2 1.9E-05 4E-10 84.8 13.6 223 26-309 285-540 (752)
150 smart00350 MCM minichromosome 98.2 2.5E-05 5.5E-10 84.3 13.9 134 176-310 301-504 (509)
151 TIGR03689 pup_AAA proteasome A 98.1 0.00012 2.6E-09 79.2 17.8 91 153-257 272-377 (512)
152 CHL00206 ycf2 Ycf2; Provisiona 98.1 2.6E-05 5.6E-10 93.5 13.5 141 154-309 1720-1876(2281)
153 PRK13406 bchD magnesium chelat 98.1 2.3E-05 5E-10 86.0 12.0 129 175-311 93-251 (584)
154 TIGR02640 gas_vesic_GvpN gas v 98.1 4.5E-05 9.9E-10 75.3 12.7 128 177-308 107-255 (262)
155 KOG2227|consensus 98.0 8.1E-06 1.8E-10 86.3 6.6 145 176-329 257-436 (529)
156 COG0542 clpA ATP-binding subun 98.0 2.8E-05 6.1E-10 87.2 11.0 211 20-272 461-734 (786)
157 TIGR02031 BchD-ChlD magnesium 98.0 4.6E-05 1E-09 83.8 12.5 134 176-311 85-259 (589)
158 TIGR01243 CDC48 AAA family ATP 98.0 0.00012 2.6E-09 82.3 15.9 101 176-286 272-392 (733)
159 COG0466 Lon ATP-dependent Lon 98.0 8E-05 1.7E-09 82.3 13.5 194 61-308 344-582 (782)
160 KOG1969|consensus 97.9 0.00014 3E-09 80.5 13.5 139 153-306 366-533 (877)
161 TIGR02974 phageshock_pspF psp 97.9 0.00016 3.4E-09 74.1 12.8 124 176-302 94-242 (329)
162 PRK11388 DNA-binding transcrip 97.8 3.7E-05 8.1E-10 84.9 8.2 127 176-307 417-568 (638)
163 KOG0730|consensus 97.8 0.00012 2.7E-09 80.1 11.7 207 36-309 429-673 (693)
164 PF00004 AAA: ATPase family as 97.8 5.8E-05 1.3E-09 64.7 7.5 51 176-238 59-125 (132)
165 TIGR00368 Mg chelatase-related 97.8 0.00017 3.7E-09 77.9 12.0 131 176-308 296-497 (499)
166 COG0464 SpoVK ATPases of the A 97.8 0.00025 5.5E-09 75.9 13.3 146 143-309 312-482 (494)
167 PRK10820 DNA-binding transcrip 97.7 0.00059 1.3E-08 74.0 13.6 122 176-303 299-447 (520)
168 TIGR02329 propionate_PrpR prop 97.6 0.0005 1.1E-08 74.8 12.7 130 176-306 308-466 (526)
169 COG0714 MoxR-like ATPases [Gen 97.6 0.00069 1.5E-08 68.9 12.8 67 177-249 114-193 (329)
170 COG0542 clpA ATP-binding subun 97.6 0.00045 9.8E-09 77.7 11.5 138 124-289 226-392 (786)
171 PF03215 Rad17: Rad17 cell cyc 97.6 0.002 4.4E-08 70.0 15.8 113 175-288 132-269 (519)
172 PRK10365 transcriptional regul 97.5 0.00017 3.8E-09 75.2 7.0 127 176-305 234-384 (441)
173 TIGR00764 lon_rel lon-related 97.5 0.00058 1.3E-08 75.5 11.4 135 176-310 218-391 (608)
174 COG1221 PspF Transcriptional r 97.5 0.0002 4.4E-09 75.2 6.8 208 37-290 74-309 (403)
175 PRK09862 putative ATP-dependen 97.5 0.0012 2.5E-08 71.6 12.5 132 176-309 295-491 (506)
176 PRK11608 pspF phage shock prot 97.4 0.0019 4.1E-08 66.0 12.5 115 176-290 101-240 (326)
177 PRK07452 DNA polymerase III su 97.4 0.0017 3.7E-08 65.6 12.0 123 176-308 62-197 (326)
178 PRK15115 response regulator Gl 97.4 0.00067 1.4E-08 71.2 8.9 126 176-305 229-379 (444)
179 PF05621 TniB: Bacterial TniB 97.3 0.0032 6.9E-08 64.0 13.2 239 28-306 22-285 (302)
180 TIGR00390 hslU ATP-dependent p 97.3 0.0011 2.4E-08 70.3 10.2 134 176-309 248-429 (441)
181 PRK05201 hslU ATP-dependent pr 97.3 0.00094 2E-08 70.8 9.7 133 176-309 250-431 (443)
182 PRK05022 anaerobic nitric oxid 97.3 0.0029 6.4E-08 68.4 13.4 114 176-291 282-421 (509)
183 PRK15424 propionate catabolism 97.3 0.002 4.3E-08 70.4 11.6 128 176-304 323-479 (538)
184 PLN00020 ribulose bisphosphate 97.3 0.0032 6.9E-08 65.9 12.2 112 143-271 184-328 (413)
185 PRK05574 holA DNA polymerase I 97.2 0.0029 6.3E-08 63.8 11.3 121 176-308 77-211 (340)
186 COG3267 ExeA Type II secretory 97.2 0.0028 6E-08 63.0 10.6 139 155-304 114-267 (269)
187 PF01078 Mg_chelatase: Magnesi 97.1 0.00039 8.5E-09 67.0 4.0 28 175-202 106-133 (206)
188 COG0465 HflB ATP-dependent Zn 97.1 0.0069 1.5E-07 66.7 13.9 214 35-309 144-389 (596)
189 PTZ00111 DNA replication licen 97.1 0.0058 1.3E-07 70.0 13.7 135 176-310 558-804 (915)
190 PRK15429 formate hydrogenlyase 97.1 0.0041 8.8E-08 69.6 12.1 115 176-290 471-609 (686)
191 KOG0731|consensus 97.0 0.01 2.3E-07 66.8 14.4 212 39-308 309-551 (774)
192 TIGR01818 ntrC nitrogen regula 97.0 0.0054 1.2E-07 64.6 11.3 127 176-306 229-380 (463)
193 COG2204 AtoC Response regulato 97.0 0.007 1.5E-07 64.9 11.7 219 39-304 139-385 (464)
194 PRK13765 ATP-dependent proteas 97.0 0.0063 1.4E-07 67.8 11.8 133 176-308 227-398 (637)
195 COG0606 Predicted ATPase with 96.8 0.017 3.7E-07 61.9 13.3 28 175-202 283-310 (490)
196 KOG1970|consensus 96.8 0.018 3.9E-07 62.6 13.6 108 175-287 194-320 (634)
197 KOG2004|consensus 96.8 0.0041 8.9E-08 69.2 8.2 92 176-278 506-633 (906)
198 COG1067 LonB Predicted ATP-dep 96.7 0.0018 3.9E-08 72.0 5.4 126 175-309 225-398 (647)
199 TIGR02915 PEP_resp_reg putativ 96.7 0.014 3E-07 61.3 11.4 125 176-303 234-382 (445)
200 KOG0733|consensus 96.5 0.039 8.5E-07 60.8 13.0 107 143-271 259-392 (802)
201 PRK10923 glnG nitrogen regulat 96.4 0.022 4.7E-07 60.4 11.0 123 176-304 233-382 (469)
202 PRK11361 acetoacetate metaboli 96.4 0.023 5.1E-07 59.7 11.2 125 176-304 238-387 (457)
203 PF00493 MCM: MCM2/3/5 family 96.4 0.0046 1E-07 63.4 5.7 133 176-310 122-326 (331)
204 KOG0740|consensus 96.4 0.014 3.1E-07 61.9 9.1 89 175-271 245-352 (428)
205 KOG0652|consensus 96.4 0.027 5.9E-07 56.6 10.4 134 153-307 251-409 (424)
206 PRK06585 holA DNA polymerase I 96.4 0.05 1.1E-06 55.4 12.7 119 176-308 82-208 (343)
207 PF07726 AAA_3: ATPase family 96.3 0.0055 1.2E-07 55.2 4.7 59 174-238 61-130 (131)
208 TIGR01650 PD_CobS cobaltochela 96.3 0.02 4.3E-07 59.0 9.1 96 176-271 135-252 (327)
209 KOG0742|consensus 96.1 0.065 1.4E-06 56.8 12.1 169 23-255 338-525 (630)
210 PRK05629 hypothetical protein; 96.1 0.074 1.6E-06 53.9 12.4 119 176-308 65-190 (318)
211 COG3604 FhlA Transcriptional r 96.1 0.012 2.7E-07 63.2 6.9 210 33-290 215-456 (550)
212 KOG0736|consensus 96.1 0.12 2.7E-06 58.3 14.5 98 36-188 667-777 (953)
213 COG1219 ClpX ATP-dependent pro 96.0 0.02 4.4E-07 58.8 7.7 132 153-285 141-362 (408)
214 COG1241 MCM2 Predicted ATPase 95.9 0.064 1.4E-06 60.2 11.8 133 176-310 384-592 (682)
215 KOG0727|consensus 95.9 0.057 1.2E-06 54.2 9.9 137 153-309 235-395 (408)
216 KOG0737|consensus 95.9 0.02 4.3E-07 59.6 6.9 104 173-289 184-310 (386)
217 KOG0745|consensus 95.8 0.096 2.1E-06 55.9 11.7 65 226-290 422-508 (564)
218 PF01637 Arch_ATPase: Archaeal 95.8 0.046 9.9E-07 50.9 8.5 97 176-280 119-232 (234)
219 PRK07914 hypothetical protein; 95.8 0.12 2.6E-06 52.5 12.1 119 176-308 65-192 (320)
220 cd00009 AAA The AAA+ (ATPases 95.5 0.033 7.1E-07 47.1 6.0 66 176-244 85-151 (151)
221 KOG0482|consensus 95.1 0.11 2.4E-06 56.3 9.6 134 176-310 440-638 (721)
222 KOG1051|consensus 94.9 0.11 2.3E-06 59.9 9.2 79 176-255 661-781 (898)
223 PRK04132 replication factor C 94.8 0.014 2.9E-07 67.0 2.0 49 28-82 7-55 (846)
224 KOG0651|consensus 94.6 0.08 1.7E-06 54.4 6.7 37 142-187 201-237 (388)
225 COG3829 RocR Transcriptional r 94.6 0.15 3.2E-06 55.7 8.9 122 176-304 341-491 (560)
226 PRK12377 putative replication 94.5 0.2 4.3E-06 49.7 9.0 33 176-208 164-201 (248)
227 PHA02244 ATPase-like protein 94.3 0.12 2.7E-06 54.2 7.4 70 176-247 181-263 (383)
228 PF13173 AAA_14: AAA domain 94.2 0.053 1.1E-06 47.5 3.9 65 176-250 62-127 (128)
229 PHA00729 NTP-binding motif con 94.2 0.044 9.5E-07 53.7 3.6 36 226-261 108-143 (226)
230 PF07728 AAA_5: AAA domain (dy 93.8 0.09 1.9E-06 46.1 4.6 62 176-237 66-139 (139)
231 COG1220 HslU ATP-dependent pro 93.8 0.53 1.1E-05 49.1 10.6 132 176-308 251-431 (444)
232 PRK08487 DNA polymerase III su 93.7 0.61 1.3E-05 47.6 11.1 118 176-308 72-198 (328)
233 KOG0726|consensus 93.6 0.27 5.8E-06 50.4 8.0 39 175-213 278-333 (440)
234 KOG0738|consensus 93.5 0.25 5.4E-06 52.2 7.8 45 226-271 362-413 (491)
235 PRK05907 hypothetical protein; 93.1 0.94 2E-05 46.4 11.2 120 177-308 71-201 (311)
236 KOG0728|consensus 93.1 1 2.3E-05 45.3 11.0 122 176-311 241-389 (404)
237 PF06144 DNA_pol3_delta: DNA p 93.0 0.3 6.6E-06 44.2 6.8 102 176-286 58-170 (172)
238 COG1466 HolA DNA polymerase II 92.9 1.7 3.6E-05 44.6 12.8 121 177-309 76-206 (334)
239 KOG0733|consensus 92.4 1.3 2.9E-05 49.3 11.6 95 153-270 591-711 (802)
240 PRK11331 5-methylcytosine-spec 91.5 0.71 1.5E-05 49.8 8.3 80 176-255 273-369 (459)
241 KOG0730|consensus 91.3 1.8 3.9E-05 48.5 11.2 133 149-307 260-413 (693)
242 PF05673 DUF815: Protein of un 91.2 2.4 5.3E-05 42.3 11.1 109 176-285 107-244 (249)
243 KOG0735|consensus 90.9 1.5 3.3E-05 49.6 10.3 115 153-290 747-885 (952)
244 KOG0480|consensus 90.4 1.8 3.8E-05 48.5 10.1 134 177-310 444-643 (764)
245 PF13401 AAA_22: AAA domain; P 90.4 0.46 9.9E-06 40.7 4.7 34 177-210 89-123 (131)
246 PF14516 AAA_35: AAA-like doma 90.2 1.6 3.5E-05 44.7 9.4 92 175-276 127-233 (331)
247 KOG0744|consensus 89.2 2.7 5.8E-05 43.9 9.7 97 140-255 223-337 (423)
248 COG3284 AcoR Transcriptional a 88.6 0.82 1.8E-05 50.7 6.0 113 176-290 408-540 (606)
249 KOG0739|consensus 88.6 2.1 4.5E-05 44.3 8.4 88 175-271 225-331 (439)
250 cd07979 TAF9 TATA Binding Prot 88.6 2.3 4.9E-05 37.6 7.7 60 249-312 6-68 (117)
251 KOG0735|consensus 88.5 7.6 0.00016 44.3 13.3 144 153-311 477-649 (952)
252 KOG1968|consensus 88.4 2.3 4.9E-05 49.4 9.6 98 177-287 430-536 (871)
253 COG2842 Uncharacterized ATPase 87.5 7.2 0.00016 39.9 11.5 126 39-207 70-197 (297)
254 COG5271 MDN1 AAA ATPase contai 87.2 2.3 5E-05 52.6 8.7 92 178-281 958-1071(4600)
255 KOG1808|consensus 87.2 2.1 4.5E-05 53.0 8.7 77 177-258 509-599 (1856)
256 cd07981 TAF12 TATA Binding Pro 86.9 3.8 8.1E-05 33.0 7.5 61 246-310 3-67 (72)
257 PRK04841 transcriptional regul 86.3 6.7 0.00014 44.8 11.9 96 176-284 122-226 (903)
258 KOG0741|consensus 86.0 14 0.0003 41.1 13.2 94 177-286 600-719 (744)
259 PF07724 AAA_2: AAA domain (Cd 85.0 0.7 1.5E-05 43.1 2.7 27 177-203 70-107 (171)
260 smart00763 AAA_PrkA PrkA AAA d 84.6 2.9 6.2E-05 43.9 7.2 80 176-255 237-324 (361)
261 PRK06526 transposase; Provisio 83.9 4 8.7E-05 40.5 7.7 38 176-213 160-200 (254)
262 PLN03210 Resistant to P. syrin 83.1 6.1 0.00013 47.2 10.1 64 176-258 297-364 (1153)
263 CHL00195 ycf46 Ycf46; Provisio 81.5 23 0.0005 38.6 13.0 112 176-307 82-205 (489)
264 KOG1051|consensus 81.5 7.7 0.00017 45.2 9.7 68 176-254 281-359 (898)
265 PF05872 DUF853: Bacterial pro 81.2 2.1 4.5E-05 46.3 4.7 78 164-253 244-330 (502)
266 PRK08116 hypothetical protein; 80.9 1.4 3.1E-05 43.9 3.3 25 177-201 180-206 (268)
267 KOG0732|consensus 80.9 17 0.00036 43.2 12.1 102 149-271 346-470 (1080)
268 PF00808 CBFD_NFYB_HMF: Histon 80.5 11 0.00025 29.2 7.6 58 246-307 4-65 (65)
269 KOG0729|consensus 80.4 7.8 0.00017 39.6 8.2 121 176-307 271-415 (435)
270 KOG0478|consensus 80.1 17 0.00037 41.3 11.3 27 177-203 528-554 (804)
271 PF07693 KAP_NTPase: KAP famil 79.7 17 0.00037 36.2 10.6 79 175-255 172-260 (325)
272 PF13335 Mg_chelatase_2: Magne 78.1 9.4 0.0002 32.4 6.9 50 259-308 43-94 (96)
273 PF00158 Sigma54_activat: Sigm 77.5 2.1 4.5E-05 39.8 3.0 27 176-202 94-120 (168)
274 smart00576 BTP Bromodomain tra 77.0 15 0.00032 29.8 7.5 56 250-309 12-70 (77)
275 COG2036 HHT1 Histones H3 and H 75.1 14 0.00031 31.4 7.1 47 259-309 37-83 (91)
276 PF02291 TFIID-31kDa: Transcri 74.7 13 0.00029 33.5 7.3 60 249-312 17-79 (129)
277 smart00803 TAF TATA box bindin 74.6 23 0.0005 28.1 7.8 57 246-307 4-64 (65)
278 PRK09183 transposase/IS protei 74.1 6.9 0.00015 38.8 5.9 24 176-199 165-190 (259)
279 cd03287 ABC_MSH3_euk MutS3 hom 73.8 5.3 0.00012 38.9 4.9 38 176-213 111-153 (222)
280 PLN00035 histone H4; Provision 73.8 22 0.00047 31.0 8.0 61 244-309 29-93 (103)
281 COG1373 Predicted ATPase (AAA+ 73.7 7.8 0.00017 41.0 6.4 67 176-252 95-161 (398)
282 cd03284 ABC_MutS1 MutS1 homolo 73.6 7.8 0.00017 37.3 6.0 38 176-213 110-152 (216)
283 KOG0736|consensus 72.9 57 0.0012 37.9 13.0 85 175-271 490-594 (953)
284 KOG2170|consensus 72.6 9.7 0.00021 39.4 6.5 58 153-214 160-225 (344)
285 PF09077 Phage-MuB_C: Mu B tra 72.6 2.4 5.3E-05 35.0 1.8 66 242-308 9-76 (78)
286 PF10923 DUF2791: P-loop Domai 72.6 19 0.00042 38.5 9.0 76 176-255 240-343 (416)
287 PF13191 AAA_16: AAA ATPase do 72.5 3.4 7.3E-05 37.2 3.0 55 150-204 125-179 (185)
288 cd03285 ABC_MSH2_euk MutS2 hom 72.2 7.4 0.00016 37.6 5.5 46 68-128 31-83 (222)
289 PRK07952 DNA replication prote 71.2 9.1 0.0002 37.9 5.9 26 176-201 163-190 (244)
290 PRK04296 thymidine kinase; Pro 70.0 9 0.00019 36.0 5.4 32 176-207 79-110 (190)
291 PF12846 AAA_10: AAA-like doma 69.9 4.3 9.4E-05 39.3 3.3 67 174-252 219-294 (304)
292 PF14532 Sigma54_activ_2: Sigm 69.9 9.8 0.00021 33.5 5.3 38 176-213 70-109 (138)
293 COG2511 GatE Archaeal Glu-tRNA 69.2 26 0.00055 38.8 9.0 202 177-386 376-602 (631)
294 PTZ00015 histone H4; Provision 69.1 35 0.00075 29.7 8.3 61 244-309 30-94 (102)
295 smart00382 AAA ATPases associa 69.1 8.6 0.00019 31.6 4.6 22 176-197 79-100 (148)
296 PF04851 ResIII: Type III rest 69.1 6.4 0.00014 35.0 4.0 22 176-197 147-169 (184)
297 cd00076 H4 Histone H4, one of 68.5 35 0.00076 28.6 7.9 60 245-309 14-77 (85)
298 smart00534 MUTSac ATPase domai 68.1 8.9 0.00019 35.7 4.9 38 176-213 79-121 (185)
299 cd00046 DEXDc DEAD-like helica 65.5 5.3 0.00012 33.0 2.6 20 176-195 104-123 (144)
300 COG3283 TyrR Transcriptional r 64.7 29 0.00062 37.0 8.1 122 177-303 295-442 (511)
301 cd03243 ABC_MutS_homologs The 62.9 23 0.00049 33.3 6.6 19 175-193 108-127 (202)
302 TIGR01448 recD_rel helicase, p 62.8 9.2 0.0002 43.6 4.6 25 176-200 417-441 (720)
303 KOG0743|consensus 62.3 45 0.00098 36.1 9.3 125 153-321 275-428 (457)
304 TIGR00764 lon_rel lon-related 60.0 5.3 0.00011 44.7 2.0 40 36-82 13-52 (608)
305 COG3950 Predicted ATP-binding 59.2 7.2 0.00016 41.1 2.6 84 119-203 226-324 (440)
306 smart00417 H4 Histone H4. 58.8 50 0.0011 27.1 6.9 55 245-304 14-72 (74)
307 PF00488 MutS_V: MutS domain V 58.1 16 0.00035 35.8 4.8 38 176-213 123-165 (235)
308 TIGR02562 cas3_yersinia CRISPR 58.0 13 0.00029 44.0 4.8 37 176-212 594-633 (1110)
309 PF03847 TFIID_20kDa: Transcri 57.7 44 0.00096 26.8 6.4 48 259-310 18-65 (68)
310 PF00931 NB-ARC: NB-ARC domain 57.6 35 0.00077 33.1 7.2 92 176-283 102-202 (287)
311 cd03286 ABC_MSH6_euk MutS6 hom 57.5 20 0.00044 34.7 5.4 38 176-213 110-152 (218)
312 PRK09376 rho transcription ter 57.1 8.9 0.00019 41.0 2.9 20 164-187 249-268 (416)
313 PRK09694 helicase Cas3; Provis 55.5 16 0.00035 42.7 5.0 27 175-201 439-465 (878)
314 PRK13765 ATP-dependent proteas 55.2 7.5 0.00016 43.8 2.2 41 34-82 25-65 (637)
315 PF13604 AAA_30: AAA domain; P 54.7 13 0.00028 35.2 3.4 96 176-287 94-189 (196)
316 PF09415 CENP-X: CENP-S associ 54.6 13 0.00027 30.3 2.8 66 230-309 1-67 (72)
317 cd03282 ABC_MSH4_euk MutS4 hom 54.5 29 0.00062 33.2 5.8 37 176-213 109-150 (204)
318 TIGR00767 rho transcription te 54.4 13 0.00028 39.8 3.6 28 158-189 242-269 (415)
319 PF07524 Bromo_TP: Bromodomain 54.1 82 0.0018 25.2 7.6 56 250-309 12-70 (77)
320 COG1484 DnaC DNA replication p 53.5 58 0.0013 32.3 7.9 34 45-82 87-120 (254)
321 smart00487 DEXDc DEAD-like hel 53.4 8.8 0.00019 33.8 2.0 13 177-189 131-143 (201)
322 KOG0479|consensus 53.1 1.3E+02 0.0029 34.1 11.0 51 259-309 576-641 (818)
323 KOG0741|consensus 52.8 24 0.00052 39.2 5.4 60 153-213 303-378 (744)
324 cd01128 rho_factor Transcripti 52.8 24 0.00051 35.1 5.0 26 164-201 96-121 (249)
325 smart00763 AAA_PrkA PrkA AAA d 52.4 16 0.00036 38.4 4.0 43 40-82 49-93 (361)
326 PF10236 DAP3: Mitochondrial r 50.6 1.3E+02 0.0028 30.7 10.1 41 239-280 258-307 (309)
327 KOG0481|consensus 50.5 60 0.0013 36.1 7.9 27 176-202 429-455 (729)
328 cd03281 ABC_MSH5_euk MutS5 hom 50.0 28 0.00061 33.4 5.0 14 176-189 109-123 (213)
329 COG1435 Tdk Thymidine kinase [ 49.2 26 0.00057 34.0 4.5 25 177-201 84-108 (201)
330 COG2909 MalT ATP-dependent tra 48.8 1.3E+02 0.0029 35.2 10.6 97 176-284 130-234 (894)
331 TIGR02746 TraC-F-type type-IV 48.5 32 0.0007 39.2 5.9 90 175-271 637-734 (797)
332 PF00072 Response_reg: Respons 46.7 46 0.00099 26.9 5.2 69 176-255 44-112 (112)
333 PF00125 Histone: Core histone 46.7 41 0.0009 26.4 4.7 46 259-308 28-73 (75)
334 COG4650 RtcR Sigma54-dependent 46.2 10 0.00022 39.2 1.4 53 140-203 256-310 (531)
335 PF00270 DEAD: DEAD/DEAH box h 46.1 12 0.00025 33.1 1.6 15 176-190 120-134 (169)
336 KOG3334|consensus 46.0 97 0.0021 28.7 7.3 57 249-310 18-78 (148)
337 PRK08939 primosomal protein Dn 45.8 16 0.00034 37.3 2.7 14 176-189 218-231 (306)
338 PF07652 Flavi_DEAD: Flaviviru 45.2 43 0.00093 31.0 5.1 23 174-196 94-116 (148)
339 PF00265 TK: Thymidine kinase; 44.8 23 0.0005 33.2 3.4 25 176-201 77-101 (176)
340 KOG0870|consensus 44.1 1.5E+02 0.0032 28.1 8.4 46 259-308 31-76 (172)
341 TIGR01587 cas3_core CRISPR-ass 43.7 24 0.00052 35.8 3.6 24 177-200 126-149 (358)
342 PHA03368 DNA packaging termina 38.1 37 0.0008 38.7 4.2 39 175-213 352-391 (738)
343 cd03283 ABC_MutS-like MutS-lik 38.0 1.5E+02 0.0032 28.1 7.8 38 175-213 105-147 (199)
344 TIGR01070 mutS1 DNA mismatch r 37.9 49 0.0011 38.6 5.3 36 68-118 593-635 (840)
345 TIGR00643 recG ATP-dependent D 37.6 34 0.00073 38.3 3.8 24 177-200 359-382 (630)
346 cd00074 H2A Histone 2A; H2A is 36.9 1.3E+02 0.0028 26.6 6.6 59 246-308 22-84 (115)
347 PRK05399 DNA mismatch repair p 36.8 73 0.0016 37.2 6.5 35 68-117 608-649 (854)
348 PF12775 AAA_7: P-loop contain 36.6 25 0.00055 35.2 2.4 81 175-255 100-190 (272)
349 PRK13695 putative NTPase; Prov 36.5 45 0.00097 30.4 3.9 69 175-255 96-169 (174)
350 COG4098 comFA Superfamily II D 35.9 43 0.00093 35.4 3.9 37 176-212 203-243 (441)
351 PHA03333 putative ATPase subun 35.8 51 0.0011 37.8 4.8 38 176-213 295-332 (752)
352 TIGR02858 spore_III_AA stage I 34.1 2.9E+02 0.0062 27.8 9.5 28 53-82 99-126 (270)
353 TIGR03744 traC_PFL_4706 conjug 33.0 1.3E+02 0.0028 35.3 7.8 88 175-271 733-824 (893)
354 PF03354 Terminase_1: Phage Te 30.4 67 0.0015 34.6 4.6 39 175-213 123-162 (477)
355 PRK15455 PrkA family serine pr 29.6 47 0.001 37.4 3.3 43 40-82 75-118 (644)
356 PF03266 NTPase_1: NTPase; In 29.5 48 0.001 30.7 2.9 64 176-251 96-164 (168)
357 TIGR00929 VirB4_CagE type IV s 29.4 84 0.0018 35.7 5.4 88 175-269 629-720 (785)
358 COG1102 Cmk Cytidylate kinase 29.4 41 0.0009 32.0 2.4 71 71-171 4-75 (179)
359 PF09848 DUF2075: Uncharacteri 29.3 38 0.00083 34.8 2.4 27 175-201 83-117 (352)
360 PF05970 PIF1: PIF1-like helic 28.2 37 0.00079 35.3 2.0 27 177-203 104-130 (364)
361 TIGR00390 hslU ATP-dependent p 27.8 38 0.00082 36.6 2.1 42 41-84 12-65 (441)
362 PRK10536 hypothetical protein; 27.4 71 0.0015 32.2 3.8 27 174-200 175-201 (262)
363 PF05729 NACHT: NACHT domain 27.4 1.4E+02 0.003 25.8 5.4 69 176-255 82-160 (166)
364 COG5192 BMS1 GTP-binding prote 27.2 2.1E+02 0.0045 32.5 7.5 36 177-212 137-172 (1077)
365 PRK10875 recD exonuclease V su 27.0 64 0.0014 36.3 3.8 26 175-200 265-290 (615)
366 COG4088 Predicted nucleotide k 26.8 4.3E+02 0.0093 26.5 8.8 63 176-255 74-136 (261)
367 COG1200 RecG RecG-like helicas 26.6 90 0.0019 35.6 4.8 35 177-212 386-420 (677)
368 PF12774 AAA_6: Hydrolytic ATP 26.4 4.4E+02 0.0095 25.8 9.1 76 177-253 86-175 (231)
369 PHA02558 uvsW UvsW helicase; P 26.4 54 0.0012 35.5 3.0 24 176-199 223-246 (501)
370 smart00488 DEXDc2 DEAD-like he 26.1 45 0.00097 33.6 2.2 21 175-195 236-256 (289)
371 smart00489 DEXDc3 DEAD-like he 26.1 45 0.00097 33.6 2.2 21 175-195 236-256 (289)
372 COG3899 Predicted ATPase [Gene 25.9 3.8E+02 0.0083 31.4 9.9 100 175-288 154-266 (849)
373 PRK14712 conjugal transfer nic 25.8 93 0.002 39.0 5.0 93 175-285 930-1024(1623)
374 PRK13826 Dtr system oriT relax 25.8 63 0.0014 38.9 3.6 27 176-202 469-495 (1102)
375 PRK06921 hypothetical protein; 24.6 1.9E+02 0.004 28.9 6.2 11 176-186 178-188 (266)
376 PF13304 AAA_21: AAA domain; P 24.5 1.3E+02 0.0027 27.1 4.7 37 177-213 259-298 (303)
377 PF07240 Turandot: Stress-indu 24.5 71 0.0015 27.0 2.7 29 389-419 26-54 (85)
378 PF06733 DEAD_2: DEAD_2; Inte 24.5 38 0.00083 31.0 1.2 13 176-188 146-158 (174)
379 PF06309 Torsin: Torsin; Inte 24.5 34 0.00074 30.8 0.9 45 40-88 24-75 (127)
380 COG1061 SSL2 DNA or RNA helica 23.9 64 0.0014 34.6 2.9 26 176-201 147-172 (442)
381 COG0249 MutS Mismatch repair A 23.6 1.2E+02 0.0026 35.5 5.2 23 68-90 608-637 (843)
382 cd08050 TAF6 TATA Binding Prot 23.5 3.4E+02 0.0074 28.1 8.1 56 249-309 4-63 (343)
383 COG2607 Predicted ATPase (AAA+ 23.2 8.2E+02 0.018 25.0 11.9 111 175-286 139-277 (287)
384 TIGR02760 TraI_TIGR conjugativ 22.9 1.1E+02 0.0023 39.4 4.9 95 175-285 1112-1208(1960)
385 TIGR01447 recD exodeoxyribonuc 22.6 1E+02 0.0022 34.6 4.2 26 175-200 259-284 (586)
386 PRK10917 ATP-dependent DNA hel 22.3 83 0.0018 35.7 3.6 21 177-197 385-405 (681)
387 TIGR02768 TraA_Ti Ti-type conj 21.4 93 0.002 35.8 3.8 28 175-202 439-466 (744)
388 PF00176 SNF2_N: SNF2 family N 20.8 68 0.0015 31.0 2.2 13 175-187 134-146 (299)
389 PF13086 AAA_11: AAA domain; P 20.5 38 0.00082 31.2 0.4 14 69-82 19-32 (236)
390 PRK13889 conjugal transfer rel 20.4 88 0.0019 37.3 3.4 26 176-201 434-459 (988)
391 COG0218 Predicted GTPase [Gene 20.3 4.3E+02 0.0092 25.7 7.4 59 153-213 87-145 (200)
392 PF13545 HTH_Crp_2: Crp-like h 20.0 1.1E+02 0.0024 23.6 2.9 22 396-417 42-63 (76)
No 1
>KOG2680|consensus
Probab=100.00 E-value=1.3e-89 Score=674.02 Aligned_cols=329 Identities=64% Similarity=1.017 Sum_probs=315.7
Q ss_pred CcccccccccccccccccccccCccCCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCC--------------
Q psy1686 2 IAAAKVQEVREITRVERVGAHSHIRGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMV-------------- 67 (448)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~hsHi~glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~g-------------- 67 (448)
||.....|+||+++++||++||||+||||++.++|++.++|||||.++|+|+|++++||++||++|
T Consensus 1 ~a~~~~~e~rDv~~veri~aHSHI~GlGldd~le~~~~s~GmVGQ~~AR~Aagvi~kmi~egkiaGraiLiaG~pgtGKt 80 (454)
T KOG2680|consen 1 MATLDLIEIRDVTRVERIGAHSHIRGLGLDDVLEPRYVSEGMVGQVKARKAAGVILKMIREGKIAGRAILIAGQPGTGKT 80 (454)
T ss_pred CcccccccccchhhhhhccchhhccccCCCcccCcccccccchhhHHHHHHhHHHHHHHHcCcccceEEEEecCCCCCce
Confidence 567788899999999999999999999999999999999999999999999999999999999986
Q ss_pred --------------CCcccccCCC--------------------------------------------C-----Cc----
Q psy1686 68 --------------WPCVMCGRGK--------------------------------------------N-----PQ---- 80 (448)
Q Consensus 68 --------------pf~~~~G~ei--------------------------------------------~-----GK---- 80 (448)
||+.++|||| | ||
T Consensus 81 AiAmg~sksLG~~tpF~~i~gSEI~SlEmsKTEAltQAfRksiGvrIKEetevIEGEVVeiqidRp~tg~g~k~GKlt~k 160 (454)
T KOG2680|consen 81 AIAMGMSKSLGDDTPFTSISGSEIYSLEMSKTEALTQAFRKSIGVRIKEETEVIEGEVVEIQIDRPATGMGSKVGKLTLK 160 (454)
T ss_pred eeeeehhhhhCCCCceeeeecceeeeecccHHHHHHHHHHHhhceEeeheeeeecceEEEEEeeccccCcCcccceeEEe
Confidence 9999999999 1 22
Q ss_pred ch-----------------------hh---hhhhccCcc--------ccccCCCccCCCCccccCCCcccceeeeeeccc
Q psy1686 81 KV-----------------------KK---ISTATGREE--------EPDYDGWLADVTKDLRCPDGELQKRKTVVHTVT 126 (448)
Q Consensus 81 tt-----------------------~~---I~~~~gk~~--------a~~~d~~~~~~~~fv~~p~ge~~k~kei~~~vt 126 (448)
|| |+ |++++||++ +++||+ +|.+++|||||+||++|+||++|+||
T Consensus 161 TtdMEt~ydlG~Kmi~~l~KeKV~aGDVI~idka~GkitKlGrSf~rsrdyDa-mG~~tkfVqCPeGElqkrkevvhtvs 239 (454)
T KOG2680|consen 161 TTDMETIYDLGMKMIESLTKEKVQAGDVITIDKASGKITKLGRSFTRSRDYDA-MGSQTKFVQCPEGELQKRKEVVHTVS 239 (454)
T ss_pred ecchhhHHHHHHHHHHHhhHhhccCCceEEEEcccceeehhhccccccccCCc-cCCccceecCCchhhhheeeeeEeee
Confidence 11 00 999999999 889999 78899999999999999999999999
Q ss_pred hhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCCe
Q psy1686 127 LHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSPV 206 (448)
Q Consensus 127 LheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi 206 (448)
|||||++|||+|||.|+|+|+++||++|+|++||..+.+|+++|+++++|+||||||||||+.+||+||||++|+.++|+
T Consensus 240 LHeIDViNSrtqG~lALFsGdTGEIr~EvRdqin~KV~eWreEGKAeivpGVLFIDEvHMLDIEcFsFlNrAlE~d~~Pi 319 (454)
T KOG2680|consen 240 LHEIDVINSRTQGFLALFSGDTGEIRSEVRDQINTKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALENDMAPI 319 (454)
T ss_pred ecccccccccccceEEEEeCCcccccHHHHHHHHHHHHHHHhcCCeeeccceEEEeeehhhhhHHHHHHHHHhhhccCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHH
Q psy1686 207 VITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAI 280 (448)
Q Consensus 207 ~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL 280 (448)
+++|||+|++.|+||++.+||+||.+||+|++||...||+.+|+++||++|| ++++|+++|.+++...++|||+
T Consensus 320 iimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai 399 (454)
T KOG2680|consen 320 IIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAI 399 (454)
T ss_pred EEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 9999999999999899999999
Q ss_pred HHHHHHHHHhhhhCCCcccHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhh
Q psy1686 281 QLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMFDS 331 (448)
Q Consensus 281 ~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~D~~~s~~~L~~~~~~~l~~~ 331 (448)
+|+..|...|.++++..+..+||+++|.+|+|.++|.+||.+++..|||++
T Consensus 400 ~Lit~a~~~~~krk~~~v~~~di~r~y~LFlD~~Rs~~yl~E~~~~y~~~~ 450 (454)
T KOG2680|consen 400 HLITAASLVCLKRKGKVVEVDDIERVYRLFLDEKRSMKYLTEYQSGYLFSE 450 (454)
T ss_pred HHHHHHHHHHHHhcCceeehhHHHHHHHHHhhhhhhhHHHHHhhhcccccc
Confidence 999999999888888899999999999999999999999999999999975
No 2
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=100.00 E-value=3.7e-82 Score=632.63 Aligned_cols=313 Identities=52% Similarity=0.854 Sum_probs=295.2
Q ss_pred cccccccccccCccCCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCC-------------------------
Q psy1686 13 ITRVERVGAHSHIRGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMV------------------------- 67 (448)
Q Consensus 13 ~~~~~~~~~hsHi~glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~g------------------------- 67 (448)
....+||++||||+|||||+.++|+...+|||||.++|+|+|++++||++||++|
T Consensus 11 ~~~~~~i~aHSHI~GLGLdeng~~k~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG 90 (450)
T COG1224 11 VGERERIAAHSHIKGLGLDENGKAKFIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELG 90 (450)
T ss_pred cchhcccchhccccccccCCCCCEeEcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3445789999999999999999999999999999999999999999999999997
Q ss_pred ---CCcccccCCCC------------------------------------------------Cc---------ch-----
Q psy1686 68 ---WPCVMCGRGKN------------------------------------------------PQ---------KV----- 82 (448)
Q Consensus 68 ---pf~~~~G~ei~------------------------------------------------GK---------tt----- 82 (448)
||+.++|||+. +| +|
T Consensus 91 ~dvPF~~isgsEiYS~E~kKTE~L~qa~RraIGvrikE~reV~EGeV~~l~i~~~~~p~~~y~~~~~~~~i~LkT~d~~k 170 (450)
T COG1224 91 EDVPFVAISGSEIYSLEVKKTEALTQALRRAIGVRIKETREVYEGEVVELEIRRARNPLNPYGKVPSGAIITLKTKDEEK 170 (450)
T ss_pred CCCCceeeccceeeeecccHHHHHHHHHHHhhceEeeeeeEEEEEEEEEEEEeeccCCCCCccccccceEEEEEecccce
Confidence 99999999990 11 01
Q ss_pred -------------------hh---hhhhccCcc--------cc-ccCCCccCCCCccccCCCcccceeeeeeccchhhhh
Q psy1686 83 -------------------KK---ISTATGREE--------EP-DYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEID 131 (448)
Q Consensus 83 -------------------~~---I~~~~gk~~--------a~-~~d~~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD 131 (448)
|+ |+++||+++ ++ +||. ++++|||||+|+++|+||++|+|||||||
T Consensus 171 ~~~lg~~i~~ql~~~~V~~GDVI~Id~etG~V~klGrs~~~~~~~~dl---~~~~~V~~P~Gev~K~KEi~~~vTLHDlD 247 (450)
T COG1224 171 TLRLGPEIAEQLVKEGVEEGDVIYIDAETGRVKKLGRSKARAREDFDL---EDTRFVPLPEGEVQKRKEIVQTVTLHDLD 247 (450)
T ss_pred EeecCHHHHHHHHHhCcccCCEEEEEccccEEEEeecccccccccccc---cceEEEECCCCceeeeEEEEEEEEehhhh
Confidence 11 999999999 33 6665 78899999999999999999999999999
Q ss_pred hhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEe
Q psy1686 132 VINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSPVVITAT 211 (448)
Q Consensus 132 ~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT 211 (448)
++|||++|+.+++++..+||++++|+++|+.+++|+++|+|+++||||||||+||||.+||+||+|++|+.++|++||||
T Consensus 248 v~nar~~G~~sl~~~~~~eI~~evR~~vn~~V~~~ieeGkAElVpGVLFIDEvHmLDIE~FsFlnrAlEse~aPIii~At 327 (450)
T COG1224 248 VANARAQGILSLFSGGTGEITDEVREEVNEKVKKWIEEGKAELVPGVLFIDEVHMLDIECFSFLNRALESELAPIIILAT 327 (450)
T ss_pred hhhccccchHhhhcCCcccCCHHHHHHHHHHHHHHHhcCcEEeecceEEEechhhhhHHHHHHHHHHhhcccCcEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy1686 212 NRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITT 285 (448)
Q Consensus 212 ~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~ 285 (448)
|+|++.|+||++.+||+||.+||+|.+||+++||+.+||++||++|| ++++|+++|+.++...|+|||++||..
T Consensus 328 NRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~p 407 (450)
T COG1224 328 NRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTP 407 (450)
T ss_pred CCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccH
Confidence 99999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHhhhhCCCcccHHHHHHHHHHhcchhHHHHHHHHHHhhhh
Q psy1686 286 ASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYM 328 (448)
Q Consensus 286 a~~~a~~~~~~~It~e~V~~~~~lf~D~~~s~~~L~~~~~~~l 328 (448)
|..+|..+++..|..+||+++..+|+|.++|++|++.++..++
T Consensus 408 a~iiA~~rg~~~V~~~dVe~a~~lF~D~krSv~~v~~~~~~~~ 450 (450)
T COG1224 408 ASIIAKRRGSKRVEVEDVERAKELFLDVKRSVEYVEKYEGLLL 450 (450)
T ss_pred HHHHHHHhCCCeeehhHHHHHHHHHhhHHHHHHHHHHHHhhcC
Confidence 9999988889999999999999999999999999998887653
No 3
>KOG1942|consensus
Probab=100.00 E-value=2.7e-77 Score=585.78 Aligned_cols=321 Identities=45% Similarity=0.768 Sum_probs=304.2
Q ss_pred cccccccccccccccccccCccCCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCC-----------------
Q psy1686 5 AKVQEVREITRVERVGAHSHIRGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMV----------------- 67 (448)
Q Consensus 5 ~~~~~~~~~~~~~~~~~hsHi~glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~g----------------- 67 (448)
++++||++..+..||++|||||||||++...|.....|||||+++|+|+|++++||+++|++|
T Consensus 2 ~~ieeVkst~~~~ria~HsHvkgLGlde~g~~~~~~~g~vGQ~~AReAagiivdlik~KkmaGravLlaGppgtGKTAlA 81 (456)
T KOG1942|consen 2 VKIEEVKSTGRTQRIAAHSHVKGLGLDETGNAVEVAAGFVGQENAREAAGIIVDLIKSKKMAGRAVLLAGPPGTGKTALA 81 (456)
T ss_pred cchhhhcccccchhhhhhhhccccCcCCCCCeeecccccccchhhhhhhhHHHHHHHhhhccCcEEEEecCCCCchhHHH
Confidence 578899999999999999999999999999999999999999999999999999999999986
Q ss_pred -----------CCcccccCCC----------------------------------------------C--Ccch------
Q psy1686 68 -----------WPCVMCGRGK----------------------------------------------N--PQKV------ 82 (448)
Q Consensus 68 -----------pf~~~~G~ei----------------------------------------------~--GKtt------ 82 (448)
|||.+.|||+ | |||.
T Consensus 82 laisqELG~kvPFcpmvgSEvyS~EvKKTEvLmenfRRaIglRikEtKeVYEGEVtEl~p~e~enp~ggygKtIshv~i~ 161 (456)
T KOG1942|consen 82 LAISQELGPKVPFCPMVGSEVYSNEVKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPVEAENPLGGYGKTISHVVIG 161 (456)
T ss_pred HHHHHHhCCCCCcccccchhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhcceeeEeccccccCCCCccCceeeeeEEE
Confidence 9999999999 1 4432
Q ss_pred ---hh---------------------------hhhhccCcc--------ccccCCCccCCCCccccCCCcccceeeeeec
Q psy1686 83 ---KK---------------------------ISTATGREE--------EPDYDGWLADVTKDLRCPDGELQKRKTVVHT 124 (448)
Q Consensus 83 ---~~---------------------------I~~~~gk~~--------a~~~d~~~~~~~~fv~~p~ge~~k~kei~~~ 124 (448)
++ |+++||.++ |.+||+ ++.+|||+|+||++|+||++|+
T Consensus 162 LKtaKgtKqLkLdPsiyesi~kerv~~GDViYIEaNsGavKrvGRsda~ateFDL---EaeeyVPlPKGeVhKkKeivQd 238 (456)
T KOG1942|consen 162 LKTAKGTKQLKLDPSIYESIQKERVEVGDVIYIEANSGAVKRVGRSDAYATEFDL---EAEEYVPLPKGEVHKKKEIVQD 238 (456)
T ss_pred EeecCCcceeccChHHHHHHHHhhhccCcEEEEEeccchhhcccccccchhhccc---ccceeecCCccchhhhHHHhhh
Confidence 11 888899888 899998 7889999999999999999999
Q ss_pred cchhhhhhhcccccc-------chhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHH
Q psy1686 125 VTLHEIDVINSRTHG-------FLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNR 197 (448)
Q Consensus 125 vtLheiD~~nsr~~g-------~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk 197 (448)
|||||+|+||+|||| +.++++..++|||+.+|.+||+.+++|+++|.+|++|+||||||||||+.+||.+|+|
T Consensus 239 VtLhDLD~ANARPqGgqdvlsmmgqlmkPkKTEITdkLR~eiNkvVn~Yid~GvAElvPGVLFIDEVhMLDiEcFTyL~k 318 (456)
T KOG1942|consen 239 VTLHDLDVANARPQGGQDVLSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGVAELVPGVLFIDEVHMLDIECFTYLHK 318 (456)
T ss_pred cchhhcccccCCCCccchHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcchhhhcCcceEeeehhhhhhHHHHHHHH
Confidence 999999999999998 7889999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCeEEEEecCceeEeeccc-cCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHH
Q psy1686 198 ALESEMSPVVITATNRGVTKIRGTA-YSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKI 270 (448)
Q Consensus 198 ~lEe~~~pi~IlaT~~~i~lI~~Tt-enp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~ 270 (448)
++|++.+|++|+|||+|.+.|+||+ ..+||+||++||+|.+|+++.+|+++|+++||++|+ ++++|+++++++
T Consensus 319 alES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~ 398 (456)
T KOG1942|consen 319 ALESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEI 398 (456)
T ss_pred HhcCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhh
Confidence 9999999999999999999999975 678999999999999999999999999999999999 999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhcchhHHHHHHHHHHhhhh
Q psy1686 271 ALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYM 328 (448)
Q Consensus 271 a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~D~~~s~~~L~~~~~~~l 328 (448)
+++.++|||+++|..|...|...|+..|..+||+++..+|+|.++|.+.|.+.++.|+
T Consensus 399 gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf~Dak~s~k~l~~~~~k~~ 456 (456)
T KOG1942|consen 399 GTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTELFLDAKRSAKILEESQNKYL 456 (456)
T ss_pred ccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHHHhchhhHHHHHhhhccCC
Confidence 9999999999999999999887888899999999999999999999999998777664
No 4
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=100.00 E-value=5.1e-77 Score=602.65 Aligned_cols=268 Identities=62% Similarity=0.971 Sum_probs=209.8
Q ss_pred ccccccCccCCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCC----------------------------CC
Q psy1686 18 RVGAHSHIRGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMV----------------------------WP 69 (448)
Q Consensus 18 ~~~~hsHi~glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~g----------------------------pf 69 (448)
||++|||||||||++.++|++..+|||||.++|+|+|++++||++||++| ||
T Consensus 1 Ri~~HSHI~GLGld~~~~~~~~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 1 RIGAHSHIKGLGLDENGEARYIADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp HHGCCTT--S--B-TTS-B-SEETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred CcccccccccCCcCCCCCEeeccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 79999999999999999999999999999999999999999999999997 99
Q ss_pred cccccCCC----------------------------------------------C-Cc----------ch----------
Q psy1686 70 CVMCGRGK----------------------------------------------N-PQ----------KV---------- 82 (448)
Q Consensus 70 ~~~~G~ei----------------------------------------------~-GK----------tt---------- 82 (448)
+.++|||| + || |+
T Consensus 81 ~~isgSEiyS~e~kKTE~L~qa~RraIGvrIkE~~eV~EGeVvei~~~~~~~~~~~~~~~~~~~i~LkT~~~~~~l~l~~ 160 (398)
T PF06068_consen 81 VSISGSEIYSSEVKKTEALTQAFRRAIGVRIKEEKEVYEGEVVEIKIEEAENPLNYGKTIKHGKITLKTTDMEKTLKLGP 160 (398)
T ss_dssp EEEEGGGG-BTTC-HHHHHHHHHHCSEEEEEEEEECEEEEEEEEEEE---E-TTS-SSSS-EEEEEEEETTCEEEEEE-C
T ss_pred eEcccceeeecccCchHHHHHHHHHhheEEEEEEEEEEEEEEEEEEEeeccCccccCCcceEEEEEEEEcCCceEecCCH
Confidence 99999999 0 11 11
Q ss_pred -------------hh---hhhhccCcc--------ccccCCCccCCCCccccCCCcccceeeeeeccchhhhhhhccccc
Q psy1686 83 -------------KK---ISTATGREE--------EPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTH 138 (448)
Q Consensus 83 -------------~~---I~~~~gk~~--------a~~~d~~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~ 138 (448)
|+ |+++||+++ +++||+ ++.+|||||+||++|+||++|+|||||||++|||+|
T Consensus 161 ~i~~~l~kekV~~GDVI~Id~~tG~V~k~Grs~~~~~~~D~---~~~~~V~~P~Gev~K~KEiv~~vTLHDlD~~Nsr~q 237 (398)
T PF06068_consen 161 KIYEQLQKEKVRVGDVIYIDKNTGRVKKVGRSDSYAKDYDL---EATKFVPCPKGEVHKRKEIVQTVTLHDLDVANSRPQ 237 (398)
T ss_dssp HHHHHHHHTT--TTCEEEEETTTTEEEEEEEECCCS-TTSE---CCTTEE---SS-SEEEEEEEEEEEHHHHHHHCC---
T ss_pred HHHHHHHHhCCccCcEEEEECCCCeEEEEecccchhhcccc---ccceEeeCCCCcceEEEEEEEEEeHHHhhhhhhccc
Confidence 11 999999998 889997 678999999999999999999999999999999999
Q ss_pred cchhhh----cCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCc
Q psy1686 139 GFLALF----AGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRG 214 (448)
Q Consensus 139 g~~a~~----~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~ 214 (448)
|+.++| +++++||++++|++||+.+++|+++|+++++||||||||+||||.+||+||+|++|++++|++|||||++
T Consensus 238 ~~lslf~~~~~~~~~EI~~elR~eInk~V~~wieegkAelvpGVLFIDEvHmLDiEcFsfLnralEs~~sPiiIlATNRg 317 (398)
T PF06068_consen 238 DFLSLFGQLFKGDTGEITDELREEINKKVNKWIEEGKAELVPGVLFIDEVHMLDIECFSFLNRALESELSPIIILATNRG 317 (398)
T ss_dssp ------------------HHHHHHHHHHHHHHHHCTSEEEEE-EEEEESGGGSBHHHHHHHHHHHTSTT--EEEEEES-S
T ss_pred cHHHHHHhhcCCCcccchHHHHHHHhHHHHHHHhcCceEEecceEEecchhhccHHHHHHHHHHhcCCCCcEEEEecCce
Confidence 988888 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy1686 215 VTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASV 288 (448)
Q Consensus 215 i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~ 288 (448)
++.|++|+..+||+||.+||+||+|+++.||+.+|+++||+.|| ++++|+++|++++.+.++|||++||..|..
T Consensus 318 ~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~i 397 (398)
T PF06068_consen 318 ITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPASI 397 (398)
T ss_dssp EEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHHH
T ss_pred eeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhhc
Confidence 99999999999999999999999999999999999999999999 999999999999999999999999998854
No 5
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.6e-43 Score=360.02 Aligned_cols=210 Identities=19% Similarity=0.299 Sum_probs=186.6
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.||+++|||++ ++++|||+|+.++.++|++||++|++++ +++||||..|||| |++++.+. + ..
T Consensus 12 ~PLA~rmRP~~-lde~vGQ~HLlg~~~~lrr~v~~~~l~S--mIl~GPPG~GKTTlA~liA~~~-------~------~~ 75 (436)
T COG2256 12 MPLAERLRPKS-LDEVVGQEHLLGEGKPLRRAVEAGHLHS--MILWGPPGTGKTTLARLIAGTT-------N------AA 75 (436)
T ss_pred cChHHHhCCCC-HHHhcChHhhhCCCchHHHHHhcCCCce--eEEECCCCCCHHHHHHHHHHhh-------C------Cc
Confidence 49999999999 7999999999999999999999999999 9999999559987 88775543 3 37
Q ss_pred ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 107 DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
|.. +||+++|+ +|+|+.++++.+.. ..|+ ++|||||||||
T Consensus 76 f~~------------------------------~sAv~~gv-----kdlr~i~e~a~~~~-~~gr----~tiLflDEIHR 115 (436)
T COG2256 76 FEA------------------------------LSAVTSGV-----KDLREIIEEARKNR-LLGR----RTILFLDEIHR 115 (436)
T ss_pred eEE------------------------------eccccccH-----HHHHHHHHHHHHHH-hcCC----ceEEEEehhhh
Confidence 887 88999999 99999999985443 4464 59999999999
Q ss_pred CCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc--------
Q psy1686 187 LDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-------- 258 (448)
Q Consensus 187 L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra-------- 258 (448)
||+.+|++|++.+| ++.+++||||||||+|.++++|||||+||.|+|++.+||+++|+ ||
T Consensus 116 fnK~QQD~lLp~vE-----------~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~-ra~~~~~rgl 183 (436)
T COG2256 116 FNKAQQDALLPHVE-----------NGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLK-RALLDEERGL 183 (436)
T ss_pred cChhhhhhhhhhhc-----------CCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHH-HHHhhhhcCC
Confidence 99999999999999 69999999999999999999999999999999999999999999 54
Q ss_pred ------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 ------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 ------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|.|||+||.+...++. +. .++.+.++++++
T Consensus 184 ~~~~~~i~~~a~~~l~~~s-~GD~R~aLN~LE~~~~~~~~-~~-~~~~~~l~~~l~ 236 (436)
T COG2256 184 GGQIIVLDEEALDYLVRLS-NGDARRALNLLELAALSAEP-DE-VLILELLEEILQ 236 (436)
T ss_pred CcccccCCHHHHHHHHHhc-CchHHHHHHHHHHHHHhcCC-Cc-ccCHHHHHHHHh
Confidence 6799999999999 99999999999999887742 22 455899988886
No 6
>KOG2028|consensus
Probab=100.00 E-value=2.2e-39 Score=325.79 Aligned_cols=224 Identities=18% Similarity=0.311 Sum_probs=188.6
Q ss_pred ccCCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccC
Q psy1686 25 IRGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLAD 103 (448)
Q Consensus 25 i~glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~ 103 (448)
++++||+++|||++ ++++|||+|+.+..|+|+++|++|++++ +++||||..|||| |+++.+|.|..
T Consensus 123 ~qh~PLaermRPkt-L~dyvGQ~hlv~q~gllrs~ieq~~ipS--mIlWGppG~GKTtlArlia~tsk~~---------- 189 (554)
T KOG2028|consen 123 LQHKPLAERMRPKT-LDDYVGQSHLVGQDGLLRSLIEQNRIPS--MILWGPPGTGKTTLARLIASTSKKH---------- 189 (554)
T ss_pred hccCChhhhcCcch-HHHhcchhhhcCcchHHHHHHHcCCCCc--eEEecCCCCchHHHHHHHHhhcCCC----------
Confidence 47999999999999 7999999999999999999999999999 9999999659987 88777765432
Q ss_pred CCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEec
Q psy1686 104 VTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDE 183 (448)
Q Consensus 104 ~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDE 183 (448)
...|+. ++|..++. .|+|+.+.++.+++...++ ++||||||
T Consensus 190 Syrfve------------------------------lSAt~a~t-----~dvR~ife~aq~~~~l~kr----kTilFiDE 230 (554)
T KOG2028|consen 190 SYRFVE------------------------------LSATNAKT-----NDVRDIFEQAQNEKSLTKR----KTILFIDE 230 (554)
T ss_pred ceEEEE------------------------------Eeccccch-----HHHHHHHHHHHHHHhhhcc----eeEEEeHH
Confidence 235776 66666666 9999999999877765553 69999999
Q ss_pred cCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 184 VHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 184 VH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|||| ||.+||.++|++ +++.|++||||||||+|.++.+|+|||.||.+++++.+++..||. |+
T Consensus 231 iHRF--------NksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~-raia~l~ 298 (554)
T KOG2028|consen 231 IHRF--------NKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILM-RAIASLG 298 (554)
T ss_pred hhhh--------hhhhhhccccee---ccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHH-HHHHhhc
Confidence 9998 555555555555 389999999999999999999999999999999999999999999 53
Q ss_pred ---------------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-hhhhC---CCcccHHHHHHHHH---Hhcch
Q psy1686 259 ---------------MQTDGLRVLTKIALDTSLRYAIQLITTASVV-CRRRK---ATEICMEDIRKVYA---LFLDE 313 (448)
Q Consensus 259 ---------------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~-a~~~~---~~~It~e~V~~~~~---lf~D~ 313 (448)
+++.++++|+.++ +||+|.|||.||++... +.+.+ ...++.+||++.++ .+||.
T Consensus 299 dser~~~~l~n~s~~ve~siidyla~ls-dGDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~~~YDr 374 (554)
T KOG2028|consen 299 DSERPTDPLPNSSMFVEDSIIDYLAYLS-DGDARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSHILYDR 374 (554)
T ss_pred cccccCCCCCCcchhhhHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhccceecc
Confidence 8899999999999 99999999999998543 22222 23699999999986 34554
No 7
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.2e-39 Score=339.46 Aligned_cols=228 Identities=25% Similarity=0.320 Sum_probs=188.8
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCc
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKD 107 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~f 107 (448)
+|+...||+. |+++|||+|+.++ |.+++..||++|-+ .++||...|||| |||.+ +..+|..+ ..+
T Consensus 5 ~L~rKyRP~~-F~evvGQe~v~~~---L~nal~~~ri~hAY-lfsG~RGvGKTt~Ari~A-------kalNC~~~--~~~ 70 (515)
T COG2812 5 VLARKYRPKT-FDDVVGQEHVVKT---LSNALENGRIAHAY-LFSGPRGVGKTTIARILA-------KALNCENG--PTA 70 (515)
T ss_pred HHHHHhCccc-HHHhcccHHHHHH---HHHHHHhCcchhhh-hhcCCCCcCchhHHHHHH-------HHhcCCCC--CCC
Confidence 4677899999 8999999999755 99999999999833 356666359987 88884 44555221 334
Q ss_pred cccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccC
Q psy1686 108 LRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVH 185 (448)
Q Consensus 108 v~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH 185 (448)
. |||+|..|+++.. .+++.|||+||++ |+ +++|+.++++ .+....| .++||+|||||
T Consensus 71 e--PC~~C~~Ck~I~~g~~~DviEiDaASn~--gV------------ddiR~i~e~v-~y~P~~~----ryKVyiIDEvH 129 (515)
T COG2812 71 E--PCGKCISCKEINEGSLIDVIEIDAASNT--GV------------DDIREIIEKV-NYAPSEG----RYKVYIIDEVH 129 (515)
T ss_pred C--cchhhhhhHhhhcCCcccchhhhhhhcc--Ch------------HHHHHHHHHh-ccCCccc----cceEEEEecHH
Confidence 4 5566656666665 5999999999997 44 9999877664 3333444 57999999999
Q ss_pred CCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------
Q psy1686 186 MLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------ 258 (448)
Q Consensus 186 ~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------ 258 (448)
||++.+||+|+|++||||.+ +|||||++ +++||++++|||+.|.|++++.++|...|+.-+
T Consensus 130 MLS~~afNALLKTLEEPP~hV~FIlATTe------------~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~ 197 (515)
T COG2812 130 MLSKQAFNALLKTLEEPPSHVKFILATTE------------PQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN 197 (515)
T ss_pred hhhHHHHHHHhcccccCccCeEEEEecCC------------cCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999998 99999999 999999999999999999999999988888544
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++||.+|++.| +|++|+|+++|+++..++ .+.||.+.|+.+++
T Consensus 198 ~e~~aL~~ia~~a-~Gs~RDalslLDq~i~~~----~~~It~~~v~~~lG 242 (515)
T COG2812 198 IEEDALSLIARAA-EGSLRDALSLLDQAIAFG----EGEITLESVRDMLG 242 (515)
T ss_pred cCHHHHHHHHHHc-CCChhhHHHHHHHHHHcc----CCcccHHHHHHHhC
Confidence 9999999999999 999999999999996653 35799999998886
No 8
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.4e-34 Score=302.65 Aligned_cols=340 Identities=18% Similarity=0.156 Sum_probs=237.9
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.+|++++||++ |+++|||+|+.+ .|.+++++++++| ..+|+||+..|||| |++. |+.++|. ..
T Consensus 6 ~~L~~KyRP~~-f~dvVGQe~iv~---~L~~~i~~~ri~h-a~Lf~GP~GtGKTTlAriL-------Ak~Lnce----~~ 69 (484)
T PRK14956 6 EVLSRKYRPQF-FRDVIHQDLAIG---ALQNALKSGKIGH-AYIFFGPRGVGKTTIARIL-------AKRLNCE----NP 69 (484)
T ss_pred chhHHHhCCCC-HHHHhChHHHHH---HHHHHHHcCCCCe-EEEEECCCCCCHHHHHHHH-------HHhcCcc----cc
Confidence 57899999999 899999999985 4999999999987 34789998558876 7766 3444441 11
Q ss_pred ccccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
...-|||.|..|+++.. ..+++|||+++++ |+ +++|+.++.+. .....| .++|+|||||
T Consensus 70 ~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~--gV------------d~IReL~e~l~-~~p~~g----~~KV~IIDEa 130 (484)
T PRK14956 70 IGNEPCNECTSCLEITKGISSDVLEIDAASNR--GI------------ENIRELRDNVK-FAPMGG----KYKVYIIDEV 130 (484)
T ss_pred cCccccCCCcHHHHHHccCCccceeechhhcc--cH------------HHHHHHHHHHH-hhhhcC----CCEEEEEech
Confidence 12346677777777766 4567889887654 33 78887766543 222334 3589999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|||+.++||+|+|++|+|+.+ +||++|+. +++||++++|||++|.|++++.+++.+.|+..+
T Consensus 131 h~Ls~~A~NALLKtLEEPp~~viFILaTte------------~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi 198 (484)
T PRK14956 131 HMLTDQSFNALLKTLEEPPAHIVFILATTE------------FHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV 198 (484)
T ss_pred hhcCHHHHHHHHHHhhcCCCceEEEeecCC------------hhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999887 77888887 899999999999999999999999999998665
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhcccCCC
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMFDSTVTGGA 337 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~D~~~s~~~L~~~~~~~l~~~~~~~~~ 337 (448)
++++++.+|++.| +||+|+|+++|+++..++ ...||.+.|.++++.. +.+....++ +.+..+|.
T Consensus 199 ~~e~eAL~~Ia~~S-~Gd~RdAL~lLeq~i~~~----~~~it~~~V~~~lg~~-~~~~~~~l~---------~si~~~d~ 263 (484)
T PRK14956 199 QYDQEGLFWIAKKG-DGSVRDMLSFMEQAIVFT----DSKLTGVKIRKMIGYH-GIEFLTSFI---------KSLIDPDN 263 (484)
T ss_pred CCCHHHHHHHHHHc-CChHHHHHHHHHHHHHhC----CCCcCHHHHHHHhCCC-CHHHHHHHH---------HHHHcCCc
Confidence 8999999999999 999999999999986543 2369999999888632 322222222 11111221
Q ss_pred CCccc-ccccccccCchhhHHHHHHHHhcchhhHHHhhhccccccccccCCCCCCChHHHHHHHHHHHHHHHhccceeec
Q psy1686 338 GDTKM-EVDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGHSEKNR 416 (448)
Q Consensus 338 ~~~~l-E~e~~v~lp~g~v~k~ke~v~~vTLhdlD~~na~~~g~~~l~~~~~~EI~~e~R~~i~~~v~~~i~~g~aelv~ 416 (448)
...++ ..++++ -.| .+..+++.++.-|-+|++..+..+.. ..-.+++++-.+++-+....+ +.++|.|
T Consensus 264 ~~~al~~l~~l~--~~G--~d~~~~~~~l~~~~r~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~---~~~~l~~ 332 (484)
T PRK14956 264 HSKSLEILESLY--QEG--QDIYKFLWDSIEFTHTLNLIRDSLAD----RESVNFPKEDLQKMKSDFENV---DSSKLNF 332 (484)
T ss_pred HHHHHHHHHHHH--HcC--CCHHHHHHHHHHHHHHHHHHhhcccc----hhhccCCHHHHHHHHHHHHhc---CHHHHHH
Confidence 11111 111222 223 24667888999999999988765321 112466766666655555444 4566766
Q ss_pred h--hhhhhhhhh----hhccCceeEEeccc
Q psy1686 417 V--KLTMFLRGL----IEGTVTAKTLSSPN 440 (448)
Q Consensus 417 ~--~~~~~l~~~----~e~~~~~~~~~~~n 440 (448)
. +++.+...+ +..+.+|.++++.-
T Consensus 333 ~~~~~~~~~~~~~~~~~~~s~~~r~~~E~~ 362 (484)
T PRK14956 333 LSGKLFEIYEKIKTIRLRNSFEIKVFTEIQ 362 (484)
T ss_pred HHHHHHHHHHHHHHhhhccCCCchHHHHHH
Confidence 6 445444444 34456677666544
No 9
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=4.3e-32 Score=289.46 Aligned_cols=229 Identities=21% Similarity=0.250 Sum_probs=185.1
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
..|+++.||++ |+++|||+|+.++ |.+++++++++|.+ .|+||+..|||| |++. |+.++|. ..
T Consensus 4 ~~l~~kyRP~~-f~divGq~~v~~~---L~~~~~~~~l~ha~-Lf~Gp~G~GKTt~A~~l-------Ak~l~c~----~~ 67 (509)
T PRK14958 4 QVLARKWRPRC-FQEVIGQAPVVRA---LSNALDQQYLHHAY-LFTGTRGVGKTTISRIL-------AKCLNCE----KG 67 (509)
T ss_pred hhHHHHHCCCC-HHHhcCCHHHHHH---HHHHHHhCCCCeeE-EEECCCCCCHHHHHHHH-------HHHhcCC----CC
Confidence 45788999999 8999999999864 89999999999832 688998558875 7766 3444441 22
Q ss_pred ccccCCCcccceeeee--eccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVV--HTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~--~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
....|||+|..|+++. .+.+++|+|.++.+ |+ +++|+.++.. ......| .++|+||||+
T Consensus 68 ~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~--~v------------~~iR~l~~~~-~~~p~~~----~~kV~iIDE~ 128 (509)
T PRK14958 68 VSANPCNDCENCREIDEGRFPDLFEVDAASRT--KV------------EDTRELLDNI-PYAPTKG----RFKVYLIDEV 128 (509)
T ss_pred CCcccCCCCHHHHHHhcCCCceEEEEcccccC--CH------------HHHHHHHHHH-hhccccC----CcEEEEEECh
Confidence 3445777777777764 47899999988643 33 8899877654 2222334 4699999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|||+.++||+|+|++|+|+.+ +||++|++ ++++|++++|||++|+|++++.+++.+.|+..+
T Consensus 129 ~~ls~~a~naLLk~LEepp~~~~fIlattd------------~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi 196 (509)
T PRK14958 129 HMLSGHSFNALLKTLEEPPSHVKFILATTD------------HHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV 196 (509)
T ss_pred HhcCHHHHHHHHHHHhccCCCeEEEEEECC------------hHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999887 68888887 889999999999999999999999988776554
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|+|+++|+++..+ +.+.||.++|..+++
T Consensus 197 ~~~~~al~~ia~~s-~GslR~al~lLdq~ia~----~~~~It~~~V~~~lg 242 (509)
T PRK14958 197 EFENAALDLLARAA-NGSVRDALSLLDQSIAY----GNGKVLIADVKTMLG 242 (509)
T ss_pred CCCHHHHHHHHHHc-CCcHHHHHHHHHHHHhc----CCCCcCHHHHHHHHC
Confidence 8999999999999 99999999999988543 345799999999875
No 10
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.97 E-value=8.5e-32 Score=292.64 Aligned_cols=230 Identities=22% Similarity=0.271 Sum_probs=185.6
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
++|++++||++ |+++|||+|+.+ .|.+++++|+++|. .+|+||+..|||| +++. |+.++|. ..
T Consensus 4 ~~La~KyRP~~-f~divGQe~vv~---~L~~~l~~~rl~hA-yLf~Gp~GvGKTTlAr~l-------Ak~L~c~----~~ 67 (647)
T PRK07994 4 QVLARKWRPQT-FAEVVGQEHVLT---ALANALDLGRLHHA-YLFSGTRGVGKTTIARLL-------AKGLNCE----TG 67 (647)
T ss_pred hhHHHHhCCCC-HHHhcCcHHHHH---HHHHHHHcCCCCeE-EEEECCCCCCHHHHHHHH-------HHhhhhc----cC
Confidence 57889999999 899999999986 58999999999982 2689998558876 7766 3444441 22
Q ss_pred ccccCCCcccceeeee--eccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVV--HTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~--~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
+..-|||.|..|+++. .+++++++|.++.. |+ +++|+.++... ....+| .++||||||+
T Consensus 68 ~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~--~V------------ddiR~li~~~~-~~p~~g----~~KV~IIDEa 128 (647)
T PRK07994 68 ITATPCGECDNCREIEQGRFVDLIEIDAASRT--KV------------EDTRELLDNVQ-YAPARG----RFKVYLIDEV 128 (647)
T ss_pred CCCCCCCCCHHHHHHHcCCCCCceeecccccC--CH------------HHHHHHHHHHH-hhhhcC----CCEEEEEech
Confidence 3445777777777776 47899999887422 23 88998776543 323345 3599999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|||+.++||+|+|++|||+.+ +||++|+. +++||++++|||+.|+|++++.++|.+.|+.++
T Consensus 129 h~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~------------~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i 196 (647)
T PRK07994 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTD------------PQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI 196 (647)
T ss_pred HhCCHHHHHHHHHHHHcCCCCeEEEEecCC------------ccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999988 78888887 789999999999999999999999999988644
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
++++++.+|++.| +||+|+|+++++++..+ +...|+.++|+.+++.
T Consensus 197 ~~e~~aL~~Ia~~s-~Gs~R~Al~lldqaia~----~~~~it~~~v~~~lg~ 243 (647)
T PRK07994 197 PFEPRALQLLARAA-DGSMRDALSLTDQAIAS----GNGQVTTDDVSAMLGT 243 (647)
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHHcc
Confidence 8999999999999 99999999999988543 3446999999887763
No 11
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.97 E-value=5e-32 Score=295.35 Aligned_cols=230 Identities=22% Similarity=0.258 Sum_probs=184.3
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
+.|++++||++ |+++|||+|+++ .|++++++|+++|.+ +|+|++..|||| +++. ++.++|. ..
T Consensus 4 ~vLarKYRPqt-FdEVIGQe~Vv~---~L~~aL~~gRL~HAy-LFtGPpGvGKTTlAriL-------AKaLnCe----~~ 67 (830)
T PRK07003 4 QVLARKWRPKD-FASLVGQEHVVR---ALTHALDGGRLHHAY-LFTGTRGVGKTTLSRIF-------AKALNCE----TG 67 (830)
T ss_pred HhHHHHhCCCc-HHHHcCcHHHHH---HHHHHHhcCCCCeEE-EEECCCCCCHHHHHHHH-------HHHhcCc----cC
Confidence 35788999999 899999999986 589999999999832 588998558876 6665 3444441 12
Q ss_pred ccccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
...-|||.|..|+++.. +.+++|||..+++ |+ +++|+.++... .....+ .++||||||+
T Consensus 68 ~~~~PCG~C~sCr~I~~G~h~DviEIDAas~r--gV------------DdIReLIe~a~-~~P~~g----r~KVIIIDEa 128 (830)
T PRK07003 68 VTSQPCGVCRACREIDEGRFVDYVEMDAASNR--GV------------DEMAALLERAV-YAPVDA----RFKVYMIDEV 128 (830)
T ss_pred CCCCCCcccHHHHHHhcCCCceEEEecccccc--cH------------HHHHHHHHHHH-hccccC----CceEEEEeCh
Confidence 23346677777777654 6789999987654 33 88998887553 222223 3599999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|||+..+||+|+|++|+++.+ +||++||. +++||++|+|||+.|+|++++.++|.+.|+..+
T Consensus 129 h~LT~~A~NALLKtLEEPP~~v~FILaTtd------------~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI 196 (830)
T PRK07003 129 HMLTNHAFNAMLKTLEEPPPHVKFILATTD------------PQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI 196 (830)
T ss_pred hhCCHHHHHHHHHHHHhcCCCeEEEEEECC------------hhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999877 88999988 889999999999999999999999998888544
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
++++++.+|++.+ +||+|+||++|+++..+. ...|+.++|+.+++.
T Consensus 197 ~id~eAL~lIA~~A-~GsmRdALsLLdQAia~~----~~~It~~~V~~~LG~ 243 (830)
T PRK07003 197 AFEPQALRLLARAA-QGSMRDALSLTDQAIAYS----ANEVTETAVSGMLGA 243 (830)
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc----cCCcCHHHHHHHhCC
Confidence 8999999999999 999999999999986543 346899888887753
No 12
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.97 E-value=1.2e-32 Score=276.72 Aligned_cols=105 Identities=45% Similarity=0.720 Sum_probs=101.8
Q ss_pred CcccccccccccCchhhHHHHHHHHhcchhhHHHhhhccccccccccCCCCCCChHHHHHHHHHHHHHHHhccceeechh
Q psy1686 339 DTKMEVDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGHSEKNRVK 418 (448)
Q Consensus 339 ~~~lE~e~~v~lp~g~v~k~ke~v~~vTLhdlD~~na~~~g~~~l~~~~~~EI~~e~R~~i~~~v~~~i~~g~aelv~~~ 418 (448)
++++++++|||||+|+|+|.||++|+|||||||++|||+||++++|++...||++|+|++||++|++|++||+|||||||
T Consensus 215 ~~dl~~~~~V~~P~Gev~K~KEi~~~vTLHDlDv~nar~~G~~sl~~~~~~eI~~evR~~vn~~V~~~ieeGkAElVpGV 294 (450)
T COG1224 215 DFDLEDTRFVPLPEGEVQKRKEIVQTVTLHDLDVANARAQGILSLFSGGTGEITDEVREEVNEKVKKWIEEGKAELVPGV 294 (450)
T ss_pred cccccceEEEECCCCceeeeEEEEEEEEehhhhhhhccccchHhhhcCCcccCCHHHHHHHHHHHHHHHhcCcEEeecce
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h------------hhhhhhhhhccCceeEEecccccc
Q psy1686 419 L------------TMFLRGLIEGTVTAKTLSSPNKLL 443 (448)
Q Consensus 419 ~------------~~~l~~~~e~~~~~~~~~~~n~~~ 443 (448)
| |||||+++|+.++|+||||||||.
T Consensus 295 LFIDEvHmLDIE~FsFlnrAlEse~aPIii~AtNRG~ 331 (450)
T COG1224 295 LFIDEVHMLDIECFSFLNRALESELAPIIILATNRGM 331 (450)
T ss_pred EEEechhhhhHHHHHHHHHHhhcccCcEEEEEcCCce
Confidence 9 999999999999999999999986
No 13
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=6.8e-31 Score=283.89 Aligned_cols=229 Identities=23% Similarity=0.272 Sum_probs=184.1
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.+|++++||++ |+++|||+|+.+ .|.++|++|+++| ..+|+||+..|||| |++. |+.++|. ..
T Consensus 3 ~~LarKyRPkt-FddVIGQe~vv~---~L~~aI~~grl~H-AyLF~GPpGvGKTTlAriL-------AK~LnC~----~~ 66 (702)
T PRK14960 3 QVLARKYRPRN-FNELVGQNHVSR---ALSSALERGRLHH-AYLFTGTRGVGKTTIARIL-------AKCLNCE----TG 66 (702)
T ss_pred hhHHHHhCCCC-HHHhcCcHHHHH---HHHHHHHcCCCCe-EEEEECCCCCCHHHHHHHH-------HHHhCCC----cC
Confidence 46889999998 899999999965 5899999999987 23789999558876 7766 4444441 12
Q ss_pred ccccCCCcccceeee--eeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTV--VHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei--~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
...-|||.|..|+.+ ..+++++++|+++.+ |+ +++|+.++... .....| .++|+||||+
T Consensus 67 ~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~--~V------------ddIReli~~~~-y~P~~g----k~KV~IIDEV 127 (702)
T PRK14960 67 VTSTPCEVCATCKAVNEGRFIDLIEIDAASRT--KV------------EDTRELLDNVP-YAPTQG----RFKVYLIDEV 127 (702)
T ss_pred CCCCCCccCHHHHHHhcCCCCceEEecccccC--CH------------HHHHHHHHHHh-hhhhcC----CcEEEEEech
Confidence 233455666666655 458899999997543 23 78998777543 222334 3589999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|||+..+|++|+|++|+++.+ +||++|+. ++++|.+++|||++|+|+|++.+++.+.|+..+
T Consensus 128 h~LS~~A~NALLKtLEEPP~~v~FILaTtd------------~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI 195 (702)
T PRK14960 128 HMLSTHSFNALLKTLEEPPEHVKFLFATTD------------PQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI 195 (702)
T ss_pred HhcCHHHHHHHHHHHhcCCCCcEEEEEECC------------hHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999998876 78888877 788999999999999999999999998887544
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++.+|++.+ +||+|+|+++|+++..+ +.+.|+.++|..+++
T Consensus 196 ~id~eAL~~IA~~S-~GdLRdALnLLDQaIay----g~g~IT~edV~~lLG 241 (702)
T PRK14960 196 AADQDAIWQIAESA-QGSLRDALSLTDQAIAY----GQGAVHHQDVKEMLG 241 (702)
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHhc
Confidence 9999999999999 99999999999988543 355799999998876
No 14
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=8.5e-31 Score=277.57 Aligned_cols=228 Identities=18% Similarity=0.222 Sum_probs=184.5
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCc
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKD 107 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~f 107 (448)
.|+.++||++ |+++|||+++.+ .|.+++.+|++++. .+|+||+..|||| |+|.+ +.++|..|+
T Consensus 2 ~la~KyRP~~-f~dliGQe~vv~---~L~~a~~~~ri~ha-~Lf~Gp~G~GKTT~ArilA-------k~LnC~~~~---- 65 (491)
T PRK14964 2 NLALKYRPSS-FKDLVGQDVLVR---ILRNAFTLNKIPQS-ILLVGASGVGKTTCARIIS-------LCLNCSNGP---- 65 (491)
T ss_pred ChhHHhCCCC-HHHhcCcHHHHH---HHHHHHHcCCCCce-EEEECCCCccHHHHHHHHH-------HHHcCcCCC----
Confidence 5788999998 899999999975 58999999999863 4689998558876 77763 344442222
Q ss_pred cccCCCcccceeeee--eccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccC
Q psy1686 108 LRCPDGELQKRKTVV--HTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVH 185 (448)
Q Consensus 108 v~~p~ge~~k~kei~--~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH 185 (448)
..-|||.|..|+++. .+.+++|||+++++ |+ +++|+.++.+. .....+ .++|+||||+|
T Consensus 66 ~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~--~v------------ddIR~Iie~~~-~~P~~~----~~KVvIIDEah 126 (491)
T PRK14964 66 TSDPCGTCHNCISIKNSNHPDVIEIDAASNT--SV------------DDIKVILENSC-YLPISS----KFKVYIIDEVH 126 (491)
T ss_pred CCCCccccHHHHHHhccCCCCEEEEecccCC--CH------------HHHHHHHHHHH-hccccC----CceEEEEeChH
Confidence 223556666666655 58999999998654 33 89998887652 222333 46999999999
Q ss_pred CCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------
Q psy1686 186 MLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------ 258 (448)
Q Consensus 186 ~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------ 258 (448)
||+.++||+|+|++|+|+.+ +||++|+. +.++|++++|||++|.|++++.+++.+.|...+
T Consensus 127 ~Ls~~A~NaLLK~LEePp~~v~fIlatte------------~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~ 194 (491)
T PRK14964 127 MLSNSAFNALLKTLEEPAPHVKFILATTE------------VKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE 194 (491)
T ss_pred hCCHHHHHHHHHHHhCCCCCeEEEEEeCC------------hHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999887 78888876 788999999999999999999999999988655
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|+|+++|+++..++ ++.||.++|+++++
T Consensus 195 i~~eAL~lIa~~s-~GslR~alslLdqli~y~----~~~It~e~V~~llg 239 (491)
T PRK14964 195 HDEESLKLIAENS-SGSMRNALFLLEQAAIYS----NNKISEKSVRDLLG 239 (491)
T ss_pred CCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc----CCCCCHHHHHHHHc
Confidence 9999999999999 999999999999987664 24799999998764
No 15
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.97 E-value=1.6e-32 Score=278.86 Aligned_cols=106 Identities=47% Similarity=0.765 Sum_probs=77.8
Q ss_pred CcccccccccccCchhhHHHHHHHHhcchhhHHHhhhccccccccc----cCCCCCCChHHHHHHHHHHHHHHHhcccee
Q psy1686 339 DTKMEVDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALF----AGDTGEITPEVREQISAKVTEWREEGHSEK 414 (448)
Q Consensus 339 ~~~lE~e~~v~lp~g~v~k~ke~v~~vTLhdlD~~na~~~g~~~l~----~~~~~EI~~e~R~~i~~~v~~~i~~g~ael 414 (448)
++++++++||+||+|+|+|.||++|++||||||++|||+||++++| +|+++||++|+|+|||++|++|+++|+|||
T Consensus 198 ~~D~~~~~~V~~P~Gev~K~KEiv~~vTLHDlD~~Nsr~q~~lslf~~~~~~~~~EI~~elR~eInk~V~~wieegkAel 277 (398)
T PF06068_consen 198 DYDLEATKFVPCPKGEVHKRKEIVQTVTLHDLDVANSRPQDFLSLFGQLFKGDTGEITDELREEINKKVNKWIEEGKAEL 277 (398)
T ss_dssp TTSECCTTEE---SS-SEEEEEEEEEEEHHHHHHHCC---------------------HHHHHHHHHHHHHHHHCTSEEE
T ss_pred ccccccceEeeCCCCcceEEEEEEEEEeHHHhhhhhhccccHHHHHHhhcCCCcccchHHHHHHHhHHHHHHHhcCceEE
Confidence 3477889999999999999999999999999999999999998877 888999999999999999999999999999
Q ss_pred echhh------------hhhhhhhhhccCceeEEeccccccc
Q psy1686 415 NRVKL------------TMFLRGLIEGTVTAKTLSSPNKLLK 444 (448)
Q Consensus 415 v~~~~------------~~~l~~~~e~~~~~~~~~~~n~~~~ 444 (448)
||||| |||||+++|+.++|+||+|||||..
T Consensus 278 vpGVLFIDEvHmLDiEcFsfLnralEs~~sPiiIlATNRg~~ 319 (398)
T PF06068_consen 278 VPGVLFIDEVHMLDIECFSFLNRALESELSPIIILATNRGIT 319 (398)
T ss_dssp EE-EEEEESGGGSBHHHHHHHHHHHTSTT--EEEEEES-SEE
T ss_pred ecceEEecchhhccHHHHHHHHHHhcCCCCcEEEEecCceee
Confidence 99999 9999999999999999999999864
No 16
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=4.5e-30 Score=277.22 Aligned_cols=229 Identities=14% Similarity=0.154 Sum_probs=183.5
Q ss_pred CCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCcc
Q psy1686 30 LDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDL 108 (448)
Q Consensus 30 L~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv 108 (448)
|.+++||++ |+++|||+|+.+ .|.++|++|+++|. .+|+||+..|||| |++. |+.+.|.. ...
T Consensus 3 l~~kyRP~~-f~eivGq~~i~~---~L~~~i~~~r~~ha-~Lf~Gp~G~GKTt~A~~l-------Ak~l~c~~----~~~ 66 (584)
T PRK14952 3 LYRKYRPAT-FAEVVGQEHVTE---PLSSALDAGRINHA-YLFSGPRGCGKTSSARIL-------ARSLNCAQ----GPT 66 (584)
T ss_pred HHHHhCCCc-HHHhcCcHHHHH---HHHHHHHcCCCCeE-EEEECCCCCCHHHHHHHH-------HHHhcccc----CCC
Confidence 567899999 899999999975 49999999999992 2688998558875 6666 34444411 122
Q ss_pred ccCCCcccceeeeee----ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 109 RCPDGELQKRKTVVH----TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 109 ~~p~ge~~k~kei~~----~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
.-|||+|..|+++.. ++++.++|.++++ |+ +++|+.++... .....+ .++|+||||+
T Consensus 67 ~~pCg~C~~C~~i~~~~~~~~dvieidaas~~--gv------------d~iRel~~~~~-~~P~~~----~~KVvIIDEa 127 (584)
T PRK14952 67 ATPCGVCESCVALAPNGPGSIDVVELDAASHG--GV------------DDTRELRDRAF-YAPAQS----RYRIFIVDEA 127 (584)
T ss_pred CCcccccHHHHHhhcccCCCceEEEecccccc--CH------------HHHHHHHHHHH-hhhhcC----CceEEEEECC
Confidence 347788888887752 5788899887654 33 88888766542 223334 3589999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|||+.++||+|+|++|+++.+ +||++|+. +++++++|+|||++|.|++++.+++.+.|...+
T Consensus 128 h~Lt~~A~NALLK~LEEpp~~~~fIL~tte------------~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi 195 (584)
T PRK14952 128 HMVTTAGFNALLKIVEEPPEHLIFIFATTE------------PEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV 195 (584)
T ss_pred CcCCHHHHHHHHHHHhcCCCCeEEEEEeCC------------hHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999877 88888877 789999999999999999999999988887544
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
++++++.+|++.+ +||+|+|+++|+++..++ ++..||.++|..+++.
T Consensus 196 ~i~~~al~~Ia~~s-~GdlR~aln~Ldql~~~~---~~~~It~~~v~~llg~ 243 (584)
T PRK14952 196 VVDDAVYPLVIRAG-GGSPRDTLSVLDQLLAGA---ADTHVTYQRALGLLGA 243 (584)
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcc---CCCCcCHHHHHHHHCC
Confidence 9999999999999 999999999999986543 2457999999988753
No 17
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=1.5e-30 Score=280.80 Aligned_cols=234 Identities=24% Similarity=0.281 Sum_probs=183.3
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccC-CC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLAD-VT 105 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~-~~ 105 (448)
..|++++||++ |+++|||+|+.+ .|.+++++||++|. .+|+|++..|||| +++..+ .++|.... ..
T Consensus 4 ~vLarKYRPqt-FddVIGQe~vv~---~L~~al~~gRLpHA-~LFtGP~GvGKTTLAriLAk-------aLnC~~p~~~~ 71 (700)
T PRK12323 4 QVLARKWRPRD-FTTLVGQEHVVR---ALTHALEQQRLHHA-YLFTGTRGVGKTTLSRILAK-------SLNCTGADGEG 71 (700)
T ss_pred hhHHHHhCCCc-HHHHcCcHHHHH---HHHHHHHhCCCceE-EEEECCCCCCHHHHHHHHHH-------HhcCCCccccc
Confidence 35788999999 899999999985 59999999999982 2689998448875 776533 33330000 01
Q ss_pred CccccCCCcccceeeee--eccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEec
Q psy1686 106 KDLRCPDGELQKRKTVV--HTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDE 183 (448)
Q Consensus 106 ~fv~~p~ge~~k~kei~--~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDE 183 (448)
....-|||.|..|+++. .+.+++|||.++++ |+ +++|+.++... .....| .++|+||||
T Consensus 72 g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~--gV------------DdIReLie~~~-~~P~~g----r~KViIIDE 132 (700)
T PRK12323 72 GITAQPCGQCRACTEIDAGRFVDYIEMDAASNR--GV------------DEMAQLLDKAV-YAPTAG----RFKVYMIDE 132 (700)
T ss_pred cCCCCCCcccHHHHHHHcCCCCcceEecccccC--CH------------HHHHHHHHHHH-hchhcC----CceEEEEEC
Confidence 12233566666666554 57899999988543 33 88998777543 222334 359999999
Q ss_pred cCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc----
Q psy1686 184 VHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL---- 258 (448)
Q Consensus 184 VH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra---- 258 (448)
+|||+.++||+|+|++|+++.+ +||++||. +++|+++|+|||++|+|++++.+++.+.|+..+
T Consensus 133 ah~Ls~~AaNALLKTLEEPP~~v~FILaTte------------p~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg 200 (700)
T PRK12323 133 VHMLTNHAFNAMLKTLEEPPEHVKFILATTD------------PQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG 200 (700)
T ss_pred hHhcCHHHHHHHHHhhccCCCCceEEEEeCC------------hHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC
Confidence 9999999999999999998876 89999998 889999999999999999999999998887543
Q ss_pred --CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 259 --MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 259 --i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
++++++++|++.+ +||+|+|+++++++..+ +...|+.++|.++++.
T Consensus 201 i~~d~eAL~~IA~~A-~Gs~RdALsLLdQaia~----~~~~It~~~V~~~LG~ 248 (700)
T PRK12323 201 IAHEVNALRLLAQAA-QGSMRDALSLTDQAIAY----SAGNVSEEAVRGMLGA 248 (700)
T ss_pred CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----ccCCcCHHHHHHHhCC
Confidence 8999999999999 99999999999988653 2346999999888764
No 18
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=3.3e-30 Score=285.26 Aligned_cols=229 Identities=21% Similarity=0.290 Sum_probs=180.8
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.+|++++||++ |+++|||+|+++. |+++|.+||++|. .+|+||+..|||| +++. |+.++| + ..
T Consensus 4 ~~LaeKyRP~t-FddIIGQe~Iv~~---LknaI~~~rl~HA-yLFtGPpGtGKTTLARiL-------Ak~Lnc---e-~~ 67 (944)
T PRK14949 4 QVLARKWRPAT-FEQMVGQSHVLHA---LTNALTQQRLHHA-YLFTGTRGVGKTSLARLF-------AKGLNC---E-QG 67 (944)
T ss_pred hhHHHHhCCCC-HHHhcCcHHHHHH---HHHHHHhCCCCeE-EEEECCCCCCHHHHHHHH-------HHhccC---c-cC
Confidence 57899999999 8999999999854 8999999999992 2689998548876 7765 334443 1 11
Q ss_pred ccccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
...-|||.|..|+++.. +++++++|.++.+ |+ +++|+.+... ......| .++||||||+
T Consensus 68 ~~~~pCg~C~sC~~i~~g~~~DviEidAas~~--kV------------DdIReLie~v-~~~P~~g----k~KViIIDEA 128 (944)
T PRK14949 68 VTATPCGVCSSCVEIAQGRFVDLIEVDAASRT--KV------------DDTRELLDNV-QYRPSRG----RFKVYLIDEV 128 (944)
T ss_pred CCCCCCCCchHHHHHhcCCCceEEEecccccc--CH------------HHHHHHHHHH-HhhhhcC----CcEEEEEech
Confidence 22346677777776665 6778888876432 23 7898877654 3333344 3599999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|||++++||+|+|++|+|+.+ +||++|+. +++|+++|+|||++|+|+|++.+++.+.|+.++
T Consensus 129 h~LT~eAqNALLKtLEEPP~~vrFILaTTe------------~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI 196 (944)
T PRK14949 129 HMLSRSSFNALLKTLEEPPEHVKFLLATTD------------PQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL 196 (944)
T ss_pred HhcCHHHHHHHHHHHhccCCCeEEEEECCC------------chhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999887 68887776 778999999999999999999999999988654
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|+|+++++++..+ +...|+.+.|.++++
T Consensus 197 ~~edeAL~lIA~~S-~Gd~R~ALnLLdQala~----~~~~It~~~V~~llG 242 (944)
T PRK14949 197 PFEAEALTLLAKAA-NGSMRDALSLTDQAIAF----GGGQVMLTQVQTMLG 242 (944)
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCcccHHHHHHHhC
Confidence 8999999999999 99999999999988643 334688887776654
No 19
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=3.8e-30 Score=278.97 Aligned_cols=234 Identities=23% Similarity=0.297 Sum_probs=182.8
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCC-C
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADV-T 105 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~-~ 105 (448)
+.|++++||++ |+++|||+|+.+ .|.+++++|+++|. ..|+||+..|||| +++.++. ++|...+. .
T Consensus 4 ~vla~KyRP~~-f~dviGQe~vv~---~L~~~l~~~rl~ha-~Lf~Gp~GvGKTtlAr~lAk~-------LnC~~~~~~~ 71 (618)
T PRK14951 4 LVLARKYRPRS-FSEMVGQEHVVQ---ALTNALTQQRLHHA-YLFTGTRGVGKTTVSRILAKS-------LNCQGPDGQG 71 (618)
T ss_pred HHHHHHHCCCC-HHHhcCcHHHHH---HHHHHHHcCCCCeE-EEEECCCCCCHHHHHHHHHHH-------hcCCCccccc
Confidence 35778999998 899999999975 59999999999983 2689998558876 7766433 33310000 0
Q ss_pred CccccCCCcccceeee--eeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEec
Q psy1686 106 KDLRCPDGELQKRKTV--VHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDE 183 (448)
Q Consensus 106 ~fv~~p~ge~~k~kei--~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDE 183 (448)
.-..-|||.|..|+.+ ..+.+++|+|.+..+ |+ +++|+.++.+. .....| .++|+||||
T Consensus 72 ~~~~~pCg~C~~C~~i~~g~h~D~~eldaas~~--~V------------d~iReli~~~~-~~p~~g----~~KV~IIDE 132 (618)
T PRK14951 72 GITATPCGVCQACRDIDSGRFVDYTELDAASNR--GV------------DEVQQLLEQAV-YKPVQG----RFKVFMIDE 132 (618)
T ss_pred CCCCCCCCccHHHHHHHcCCCCceeecCccccc--CH------------HHHHHHHHHHH-hCcccC----CceEEEEEC
Confidence 0112355666555555 447899999987653 23 88998886542 222233 359999999
Q ss_pred cCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc----
Q psy1686 184 VHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL---- 258 (448)
Q Consensus 184 VH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra---- 258 (448)
+|||+.++||+|+|++|+++.+ +||++|++ ++++|.+++|||++|+|++++.+++.+.|+..+
T Consensus 133 vh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd------------~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~eg 200 (618)
T PRK14951 133 VHMLTNTAFNAMLKTLEEPPEYLKFVLATTD------------PQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAEN 200 (618)
T ss_pred hhhCCHHHHHHHHHhcccCCCCeEEEEEECC------------chhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcC
Confidence 9999999999999999999887 88899887 788999999999999999999999998887654
Q ss_pred --CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 259 --MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 259 --i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
++++++.+|++.+ +||+|+|+++|+++..+ +...||.++|+++++.
T Consensus 201 i~ie~~AL~~La~~s-~GslR~al~lLdq~ia~----~~~~It~~~V~~~Lg~ 248 (618)
T PRK14951 201 VPAEPQALRLLARAA-RGSMRDALSLTDQAIAF----GSGQLQEAAVRQMLGS 248 (618)
T ss_pred CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHHcC
Confidence 8999999999999 99999999999988654 3457999999988763
No 20
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.97 E-value=6.7e-30 Score=272.08 Aligned_cols=236 Identities=18% Similarity=0.192 Sum_probs=185.8
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.+++++.||++ |+++|||+++.+ .|.+++.+|++++. .+++||+..|||| |++.+ +.++|..+....
T Consensus 9 ~~la~kyRP~~-f~dliGq~~vv~---~L~~ai~~~ri~~a-~Lf~Gp~G~GKTT~ArilA-------k~Lnc~~~~~~~ 76 (507)
T PRK06645 9 IPFARKYRPSN-FAELQGQEVLVK---VLSYTILNDRLAGG-YLLTGIRGVGKTTSARIIA-------KAVNCSALITEN 76 (507)
T ss_pred cchhhhhCCCC-HHHhcCcHHHHH---HHHHHHHcCCCCce-EEEECCCCCCHHHHHHHHH-------HHhcCccccccC
Confidence 68899999999 899999999975 58999999999863 5789999558875 77663 333331111112
Q ss_pred ccccCCCcccceeeee--eccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVV--HTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~--~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
....|||.|..|+.+. .+.+++|||+++.. |+ +++|+.++.+.. ....+ .++|+||||+
T Consensus 77 ~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~--~v------------d~Ir~iie~a~~-~P~~~----~~KVvIIDEa 137 (507)
T PRK06645 77 TTIKTCEQCTNCISFNNHNHPDIIEIDAASKT--SV------------DDIRRIIESAEY-KPLQG----KHKIFIIDEV 137 (507)
T ss_pred cCcCCCCCChHHHHHhcCCCCcEEEeeccCCC--CH------------HHHHHHHHHHHh-ccccC----CcEEEEEECh
Confidence 2234455555555554 47899999987643 33 899998877632 22333 3699999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|||+..+|++|+|++|+++.+ +||++|+. +.++|++++|||++|.|++++.+|+.++|+.++
T Consensus 138 ~~Ls~~a~naLLk~LEepp~~~vfI~aTte------------~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi 205 (507)
T PRK06645 138 HMLSKGAFNALLKTLEEPPPHIIFIFATTE------------VQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL 205 (507)
T ss_pred hhcCHHHHHHHHHHHhhcCCCEEEEEEeCC------------hHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999998877 77788876 678999999999999999999999999998666
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++|+++|++.+ +||+|+|+++|+++..++.. .+..||.++|+++++
T Consensus 206 ~ie~eAL~~Ia~~s-~GslR~al~~Ldkai~~~~~-~~~~It~~~V~~llg 254 (507)
T PRK06645 206 KTDIEALRIIAYKS-EGSARDAVSILDQAASMSAK-SDNIISPQVINQMLG 254 (507)
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhcc-CCCCcCHHHHHHHHC
Confidence 8999999999999 99999999999999776531 234799999999875
No 21
>KOG1942|consensus
Probab=99.97 E-value=2.8e-31 Score=261.64 Aligned_cols=105 Identities=29% Similarity=0.488 Sum_probs=101.4
Q ss_pred CcccccccccccCchhhHHHHHHHHhcchhhHHHhhhcccccc-------ccccCCCCCCChHHHHHHHHHHHHHHHhcc
Q psy1686 339 DTKMEVDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFL-------ALFAGDTGEITPEVREQISAKVTEWREEGH 411 (448)
Q Consensus 339 ~~~lE~e~~v~lp~g~v~k~ke~v~~vTLhdlD~~na~~~g~~-------~l~~~~~~EI~~e~R~~i~~~v~~~i~~g~ 411 (448)
.|++|+++|||+|+|+|+|.||++|+|||||||++||||||++ ++++++++|||+++|.+||++||+|||+|.
T Consensus 213 eFDLEaeeyVPlPKGeVhKkKeivQdVtLhDLD~ANARPqGgqdvlsmmgqlmkPkKTEITdkLR~eiNkvVn~Yid~Gv 292 (456)
T KOG1942|consen 213 EFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDVANARPQGGQDVLSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGV 292 (456)
T ss_pred hcccccceeecCCccchhhhHHHhhhcchhhcccccCCCCccchHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcch
Confidence 4689999999999999999999999999999999999999975 688999999999999999999999999999
Q ss_pred ceeechhh------------hhhhhhhhhccCceeEEecccccc
Q psy1686 412 SEKNRVKL------------TMFLRGLIEGTVTAKTLSSPNKLL 443 (448)
Q Consensus 412 aelv~~~~------------~~~l~~~~e~~~~~~~~~~~n~~~ 443 (448)
|||||||| |+|||++|||..+|+||.|||||.
T Consensus 293 AElvPGVLFIDEVhMLDiEcFTyL~kalES~iaPivifAsNrG~ 336 (456)
T KOG1942|consen 293 AELVPGVLFIDEVHMLDIECFTYLHKALESPIAPIVIFASNRGM 336 (456)
T ss_pred hhhcCcceEeeehhhhhhHHHHHHHHHhcCCCCceEEEecCCcc
Confidence 99999999 999999999999999999999985
No 22
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.96 E-value=5.1e-30 Score=277.32 Aligned_cols=310 Identities=17% Similarity=0.214 Sum_probs=214.8
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
+-|++++||++ |+++|||+|+.+ .|.++|++|+++|. .+|+|||..|||+ +++. |+.++|. ..
T Consensus 4 ~~l~~k~RP~~-f~~iiGq~~v~~---~L~~~i~~~~~~ha-yLf~Gp~G~GKtt~A~~l-------ak~l~c~----~~ 67 (576)
T PRK14965 4 LVLARKYRPQT-FSDLTGQEHVSR---TLQNAIDTGRVAHA-FLFTGARGVGKTSTARIL-------AKALNCE----QG 67 (576)
T ss_pred HHHHHHhCCCC-HHHccCcHHHHH---HHHHHHHcCCCCeE-EEEECCCCCCHHHHHHHH-------HHhhcCC----CC
Confidence 34678999998 899999999974 58999999999882 2689999558875 6655 3334431 11
Q ss_pred ccccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
...-|||+|..|+++.. +++++++|.++++ |+ +++|+.++.+ ......+ .++|+||||+
T Consensus 68 ~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~--~v------------~~ir~l~~~~-~~~p~~~----~~KVvIIdev 128 (576)
T PRK14965 68 LTAEPCNVCPPCVEITEGRSVDVFEIDGASNT--GV------------DDIRELRENV-KYLPSRS----RYKIFIIDEV 128 (576)
T ss_pred CCCCCCCccHHHHHHhcCCCCCeeeeeccCcc--CH------------HHHHHHHHHH-HhccccC----CceEEEEECh
Confidence 22336677777766654 6778888876543 23 7888766554 2222233 3699999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|||+.++||+|+|++|+|+.+ +||++|+. +++||++++|||++|.|++++.++|...|...+
T Consensus 129 ~~Lt~~a~naLLk~LEepp~~~~fIl~t~~------------~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi 196 (576)
T PRK14965 129 HMLSTNAFNALLKTLEEPPPHVKFIFATTE------------PHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI 196 (576)
T ss_pred hhCCHHHHHHHHHHHHcCCCCeEEEEEeCC------------hhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC
Confidence 999999999999999999887 88888887 799999999999999999999999988877543
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhcccCCC
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMFDSTVTGGA 337 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~D~~~s~~~L~~~~~~~l~~~~~~~~~ 337 (448)
++++++.+|++.+ +||+|+|+++|+++..++ +..|+.++|..+++. .+.....+++. .+..++.
T Consensus 197 ~i~~~al~~la~~a-~G~lr~al~~Ldqliay~----g~~It~edV~~llG~-~~~~~l~~ll~---------al~~~d~ 261 (576)
T PRK14965 197 SISDAALALVARKG-DGSMRDSLSTLDQVLAFC----GDAVGDDDVAELLGV-VDRRLLLDISA---------AVFGRDT 261 (576)
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc----cCCCCHHHHHHHhCC-CCHHHHHHHHH---------HHHcCCH
Confidence 9999999999999 999999999999886654 236999999988653 23222222221 1111111
Q ss_pred CCccc-ccccccccCchhhHHHHHHHHhcchhhHHHhhhccccccccccCCCCCCChHHHHHHHHHHHHHHH
Q psy1686 338 GDTKM-EVDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWRE 408 (448)
Q Consensus 338 ~~~~l-E~e~~v~lp~g~v~k~ke~v~~vTLhdlD~~na~~~g~~~l~~~~~~EI~~e~R~~i~~~v~~~i~ 408 (448)
.. .+ -.+++.. .| .....+++.++.|-+|++..+..+... ....++++-++.+.+..+.|=.
T Consensus 262 ~~-al~~l~~l~~--~G--~~~~~~l~~Ll~~~RdLl~~k~~~~~~----~~l~~~~~~~~~~~~~A~~~s~ 324 (576)
T PRK14965 262 RA-LLEIVERVDE--FG--YNMRQFCQELIDHLRNLVVLRAVGEPG----DLLDLSEAELAELRAQAAAADA 324 (576)
T ss_pred HH-HHHHHHHHHH--hC--CCHHHHHHHHHHHHHHHHHHHhcCchh----hhccCCHHHHHHHHHHHHcCCH
Confidence 10 00 0011111 11 224567788888888888777432111 0113555666666666666633
No 23
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.96 E-value=2.6e-29 Score=270.96 Aligned_cols=308 Identities=20% Similarity=0.243 Sum_probs=215.4
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
..|.+++||++ |+++|||+|+.+ .|.+.+++++++|.+ .|+||+..|||+ |++. |+.++|..+ .
T Consensus 4 ~al~~k~rP~~-f~~viGq~~v~~---~L~~~i~~~~~~hay-Lf~Gp~GtGKTt~Ak~l-------Akal~c~~~--~- 68 (559)
T PRK05563 4 QALYRKWRPQT-FEDVVGQEHITK---TLKNAIKQGKISHAY-LFSGPRGTGKTSAAKIF-------AKAVNCLNP--P- 68 (559)
T ss_pred HHHHHHhCCCc-HHhccCcHHHHH---HHHHHHHcCCCCeEE-EEECCCCCCHHHHHHHH-------HHHhcCCCC--C-
Confidence 34678899999 899999999975 589999999998833 579998558875 6655 344444111 1
Q ss_pred ccccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
..-|||.|..|+.+.. +.+++++|.+.++ |+ +++|+.++++. .....+ .++|+||||+
T Consensus 69 -~~~pC~~C~~C~~i~~g~~~dv~eidaas~~--~v------------d~ir~i~~~v~-~~p~~~----~~kViIIDE~ 128 (559)
T PRK05563 69 -DGEPCNECEICKAITNGSLMDVIEIDAASNN--GV------------DEIRDIRDKVK-YAPSEA----KYKVYIIDEV 128 (559)
T ss_pred -CCCCCCccHHHHHHhcCCCCCeEEeeccccC--CH------------HHHHHHHHHHh-hCcccC----CeEEEEEECc
Confidence 2236666667776654 6889999987543 23 78888776643 222233 4699999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|||+..+||+|+|++|+|+.+ +||++|+. ++++|++++|||+.+.|.+++.+++.+.|+..+
T Consensus 129 ~~Lt~~a~naLLKtLEepp~~~ifIlatt~------------~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi 196 (559)
T PRK05563 129 HMLSTGAFNALLKTLEEPPAHVIFILATTE------------PHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI 196 (559)
T ss_pred ccCCHHHHHHHHHHhcCCCCCeEEEEEeCC------------hhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999877 88888876 789999999999999999999999999988655
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhcccCCC
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMFDSTVTGGA 337 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~D~~~s~~~L~~~~~~~l~~~~~~~~~ 337 (448)
++++++.+|++.+ +||+|+|+++|+++..++ ...||.++|.++++.. +.....+++. .+..++.
T Consensus 197 ~i~~~al~~ia~~s-~G~~R~al~~Ldq~~~~~----~~~It~~~V~~vlg~~-~~~~i~~l~~---------al~~~d~ 261 (559)
T PRK05563 197 EYEDEALRLIARAA-EGGMRDALSILDQAISFG----DGKVTYEDALEVTGSV-SQEALDDLVD---------AIVEGDV 261 (559)
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc----cCCCCHHHHHHHhCCC-CHHHHHHHHH---------HHHccCH
Confidence 8999999999999 999999999999986553 3479999999887532 1111111111 1111111
Q ss_pred CCcccc-cccccccCchhhHHHHHHHHhcchhhHHHhhhccccccccccCCCCCCChHHHHHHHHHHHHHH
Q psy1686 338 GDTKME-VDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWR 407 (448)
Q Consensus 338 ~~~~lE-~e~~v~lp~g~v~k~ke~v~~vTLhdlD~~na~~~g~~~l~~~~~~EI~~e~R~~i~~~v~~~i 407 (448)
.. .+. .+++....+ ....++..+..|-+|++..+..+... ...++++..+.+.+..+.|=
T Consensus 262 ~~-al~~l~~l~~~g~----d~~~~l~~L~~~~Rdll~~k~~~~~~-----~~~~~~~~~~~~~~~a~~~s 322 (559)
T PRK05563 262 AK-ALKILEELLDEGK----DPNRFIEDLIYYLRDLLLVKTSPELE-----ILDESTENDELFKELSEKLD 322 (559)
T ss_pred HH-HHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHhhcCccc-----ccccCHHHHHHHHHHHHhCC
Confidence 00 000 011111111 23467778888888888776442211 12456666666666666663
No 24
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.96 E-value=4.9e-29 Score=267.28 Aligned_cols=229 Identities=23% Similarity=0.305 Sum_probs=182.0
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
++|++++||++ |+++|||+|+.+ .|.+++++|+++| ..+|+||+..|||| |++.+. .+.|. ..
T Consensus 4 ~~La~KyRP~~-f~diiGq~~~v~---~L~~~i~~~rl~h-a~Lf~Gp~GvGKTTlAr~lAk-------~L~c~----~~ 67 (546)
T PRK14957 4 QALARKYRPQS-FAEVAGQQHALN---SLVHALETQKVHH-AYLFTGTRGVGKTTLGRLLAK-------CLNCK----TG 67 (546)
T ss_pred hhHHHHHCcCc-HHHhcCcHHHHH---HHHHHHHcCCCCe-EEEEECCCCCCHHHHHHHHHH-------HhCCC----CC
Confidence 57899999998 899999999985 4899999999987 34689998558876 665533 23320 11
Q ss_pred ccccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
...-|||.|..|+.+.+ +.+++++|.++.. |+ +++|+.++.. ......|+ ++|+||||+
T Consensus 68 ~~~~pCg~C~sC~~i~~~~~~dlieidaas~~--gv------------d~ir~ii~~~-~~~p~~g~----~kViIIDEa 128 (546)
T PRK14957 68 VTAEPCNKCENCVAINNNSFIDLIEIDAASRT--GV------------EETKEILDNI-QYMPSQGR----YKVYLIDEV 128 (546)
T ss_pred CCCCCCcccHHHHHHhcCCCCceEEeeccccc--CH------------HHHHHHHHHH-HhhhhcCC----cEEEEEech
Confidence 12235677777777665 6889999876542 33 7888877654 33334443 589999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|+|+.++|++|+|++|+++.+ +||++|+. ++++|++++|||++|+|+|++.++|.+.|+..+
T Consensus 129 ~~ls~~a~naLLK~LEepp~~v~fIL~Ttd------------~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi 196 (546)
T PRK14957 129 HMLSKQSFNALLKTLEEPPEYVKFILATTD------------YHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI 196 (546)
T ss_pred hhccHHHHHHHHHHHhcCCCCceEEEEECC------------hhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999877 68888877 899999999999999999999999998888543
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|+|+++|+.+..++ ++.|+.++|+++++
T Consensus 197 ~~e~~Al~~Ia~~s-~GdlR~alnlLek~i~~~----~~~It~~~V~~~l~ 242 (546)
T PRK14957 197 NSDEQSLEYIAYHA-KGSLRDALSLLDQAISFC----GGELKQAQIKQMLG 242 (546)
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc----cCCCCHHHHHHHHc
Confidence 9999999999999 999999999999987653 25799999998654
No 25
>KOG2680|consensus
Probab=99.96 E-value=2.5e-30 Score=255.43 Aligned_cols=101 Identities=59% Similarity=0.904 Sum_probs=99.0
Q ss_pred ccccccccCchhhHHHHHHHHhcchhhHHHhhhccccccccccCCCCCCChHHHHHHHHHHHHHHHhccceeechhh---
Q psy1686 343 EVDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGHSEKNRVKL--- 419 (448)
Q Consensus 343 E~e~~v~lp~g~v~k~ke~v~~vTLhdlD~~na~~~g~~~l~~~~~~EI~~e~R~~i~~~v~~~i~~g~aelv~~~~--- 419 (448)
...+||+||+|+++|+||.+|++||||+|+.|+|.||+++||+|+++||.+|+|+|||++|.+|.++||||+|||||
T Consensus 216 ~~tkfVqCPeGElqkrkevvhtvsLHeIDViNSrtqG~lALFsGdTGEIr~EvRdqin~KV~eWreEGKAeivpGVLFID 295 (454)
T KOG2680|consen 216 SQTKFVQCPEGELQKRKEVVHTVSLHEIDVINSRTQGFLALFSGDTGEIRSEVRDQINTKVAEWREEGKAEIVPGVLFID 295 (454)
T ss_pred CccceecCCchhhhheeeeeEeeeecccccccccccceEEEEeCCcccccHHHHHHHHHHHHHHHhcCCeeeccceEEEe
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------hhhhhhhhhccCceeEEecccccc
Q psy1686 420 ---------TMFLRGLIEGTVTAKTLSSPNKLL 443 (448)
Q Consensus 420 ---------~~~l~~~~e~~~~~~~~~~~n~~~ 443 (448)
||||||++|...+|+++||||||.
T Consensus 296 EvHMLDIEcFsFlNrAlE~d~~PiiimaTNrgi 328 (454)
T KOG2680|consen 296 EVHMLDIECFSFLNRALENDMAPIIIMATNRGI 328 (454)
T ss_pred eehhhhhHHHHHHHHHhhhccCcEEEEEcCCce
Confidence 999999999999999999999986
No 26
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.96 E-value=1.3e-29 Score=243.67 Aligned_cols=201 Identities=19% Similarity=0.234 Sum_probs=139.3
Q ss_pred cCCCCCCCCCccccccccccchhhhhhhHHHHHHHhc--CCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCcc
Q psy1686 26 RGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKE--EVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLA 102 (448)
Q Consensus 26 ~glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~--~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~ 102 (448)
..-+|++++||++ +++||||+|+.+..+++.++.+. +.+.| +++||||..|||| |+|+++ +++.
T Consensus 10 ~~~~l~~~lRP~~-L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h--~lf~GPPG~GKTTLA~IIA~-------e~~~--- 76 (233)
T PF05496_consen 10 EEAPLAERLRPKS-LDEFIGQEHLKGNLKILIRAAKKRGEALDH--MLFYGPPGLGKTTLARIIAN-------ELGV--- 76 (233)
T ss_dssp --S-HHHHTS-SS-CCCS-S-HHHHHHHHHHHHHHHCTTS---E--EEEESSTTSSHHHHHHHHHH-------HCT----
T ss_pred cchhhHHhcCCCC-HHHccCcHHHHhhhHHHHHHHHhcCCCcce--EEEECCCccchhHHHHHHHh-------ccCC---
Confidence 4567899999998 89999999999999999998865 34667 9999999549987 887643 3332
Q ss_pred CCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEe
Q psy1686 103 DVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFID 182 (448)
Q Consensus 103 ~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfID 182 (448)
+|.. ++ |..-+=..|+...+.. +.. .+|||||
T Consensus 77 ---~~~~------------------------------~s----g~~i~k~~dl~~il~~-----l~~------~~ILFID 108 (233)
T PF05496_consen 77 ---NFKI------------------------------TS----GPAIEKAGDLAAILTN-----LKE------GDILFID 108 (233)
T ss_dssp ----EEE------------------------------EE----CCC--SCHHHHHHHHT-------T------T-EEEEC
T ss_pred ---CeEe------------------------------cc----chhhhhHHHHHHHHHh-----cCC------CcEEEEe
Confidence 3433 11 1101111455443322 122 4899999
Q ss_pred ccCCCCHHHHHHHHHhhhhcCCCeEEEEecC---------ceeEeeccccCCCCCCChhhhhhcccc-cCCCCCHHHHHH
Q psy1686 183 EVHMLDIECFSFLNRALESEMSPVVITATNR---------GVTKIRGTAYSSPHGIPIDLLDRMVII-PTQPYQDEEIQA 252 (448)
Q Consensus 183 EVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~---------~i~lI~~Ttenp~~~Ip~~lLSR~~ii-~~~pys~~eI~~ 252 (448)
|||||++.+|++|+.++|+....++|.++.. ..++|||||.. ..++.+|++|+.++ ++..|+.+|+.+
T Consensus 109 EIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~--g~ls~pLrdRFgi~~~l~~Y~~~el~~ 186 (233)
T PF05496_consen 109 EIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRA--GLLSSPLRDRFGIVLRLEFYSEEELAK 186 (233)
T ss_dssp TCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSG--CCTSHCCCTTSSEEEE----THHHHHH
T ss_pred chhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccc--cccchhHHhhcceecchhcCCHHHHHH
Confidence 9999999999999999999765555543322 25999999964 56899999999865 899999999999
Q ss_pred HHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy1686 253 ILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 253 IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a 290 (448)
|+++.+ +++++...||+.| +|++|.|+++|+++.++|
T Consensus 187 Iv~r~a~~l~i~i~~~~~~~Ia~rs-rGtPRiAnrll~rvrD~a 229 (233)
T PF05496_consen 187 IVKRSARILNIEIDEDAAEEIARRS-RGTPRIANRLLRRVRDFA 229 (233)
T ss_dssp HHHHCCHCTT-EE-HHHHHHHHHCT-TTSHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHhCCCcCHHHHHHHHHhc-CCChHHHHHHHHHHHHHH
Confidence 999655 9999999999999 999999999999987766
No 27
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.96 E-value=2.7e-28 Score=250.17 Aligned_cols=229 Identities=21% Similarity=0.217 Sum_probs=179.2
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.+|++++||++ |+++|||+|+.+. |.++++.|+++|+ ..++||+..|||| |++. |+.+.| ...
T Consensus 4 ~~l~~kyrP~~-~~~iiGq~~~~~~---l~~~~~~~~~~h~-~L~~Gp~G~GKTtla~~l-------a~~l~c----~~~ 67 (363)
T PRK14961 4 QILARKWRPQY-FRDIIGQKHIVTA---ISNGLSLGRIHHA-WLLSGTRGVGKTTIARLL-------AKSLNC----QNG 67 (363)
T ss_pred HHHHHHhCCCc-hhhccChHHHHHH---HHHHHHcCCCCeE-EEEecCCCCCHHHHHHHH-------HHHhcC----CCC
Confidence 46889999998 8999999999864 8999999999983 2689998558876 6654 233333 123
Q ss_pred ccccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
+.+-|||.|..|+++.+ +.+++++|.++.. ++ +++|+.++... .....+ .++|+||||+
T Consensus 68 ~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~--~v------------~~ir~i~~~~~-~~p~~~----~~kviIIDEa 128 (363)
T PRK14961 68 ITSNPCRKCIICKEIEKGLCLDLIEIDAASRT--KV------------EEMREILDNIY-YSPSKS----RFKVYLIDEV 128 (363)
T ss_pred CCCCCCCCCHHHHHHhcCCCCceEEecccccC--CH------------HHHHHHHHHHh-cCcccC----CceEEEEECh
Confidence 44457777777777766 5788888865421 12 67776665432 111222 3589999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|+++.+++++|+|++|+++.+ .||++|+. +.+++++++|||++++|+|++.+++.++|+.++
T Consensus 129 ~~l~~~a~naLLk~lEe~~~~~~fIl~t~~------------~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~ 196 (363)
T PRK14961 129 HMLSRHSFNALLKTLEEPPQHIKFILATTD------------VEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI 196 (363)
T ss_pred hhcCHHHHHHHHHHHhcCCCCeEEEEEcCC------------hHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999998877 57777765 567999999999999999999999999988655
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|.|+++|+.+..+ +...|+.++|.++++
T Consensus 197 ~i~~~al~~ia~~s-~G~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 197 DTDEYALKLIAYHA-HGSMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 9999999999999 99999999999988644 345799999998775
No 28
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.96 E-value=3.2e-28 Score=271.48 Aligned_cols=231 Identities=16% Similarity=0.174 Sum_probs=183.5
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
+.|.+++||++ |+++|||+++.+ .|.+++++|+++|. .+|+||+..|||| ++|. |+.++|.. .
T Consensus 3 ~~l~~KyRP~~-f~eiiGqe~v~~---~L~~~i~~~ri~Ha-~Lf~Gp~G~GKTt~A~~l-------Ar~L~C~~----~ 66 (824)
T PRK07764 3 LALYRRYRPAT-FAEVIGQEHVTE---PLSTALDSGRINHA-YLFSGPRGCGKTSSARIL-------ARSLNCVE----G 66 (824)
T ss_pred hhHHHHhCCCC-HHHhcCcHHHHH---HHHHHHHhCCCCce-EEEECCCCCCHHHHHHHH-------HHHhCccc----C
Confidence 45778999999 899999999975 49999999999982 3688998448865 7766 45555511 2
Q ss_pred ccccCCCcccceeeeee----ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEe
Q psy1686 107 DLRCPDGELQKRKTVVH----TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFID 182 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~----~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfID 182 (448)
...-|||+|..|+.+.. ++++++||.++++ |+ +++|+.+..+.. ...++ .++|||||
T Consensus 67 ~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~--~V------------d~iR~l~~~~~~-~p~~~----~~KV~IID 127 (824)
T PRK07764 67 PTSTPCGECDSCVALAPGGPGSLDVTEIDAASHG--GV------------DDARELRERAFF-APAES----RYKIFIID 127 (824)
T ss_pred CCCCCCcccHHHHHHHcCCCCCCcEEEecccccC--CH------------HHHHHHHHHHHh-chhcC----CceEEEEe
Confidence 23347788888887763 4788888876653 23 888886654422 12223 46999999
Q ss_pred ccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc---
Q psy1686 183 EVHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL--- 258 (448)
Q Consensus 183 EVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra--- 258 (448)
|+|||+.++||+|+|++|+++.+ +|||+|+. +.+|+++|+|||++|+|++++.++|.+.|+..+
T Consensus 128 Ead~lt~~a~NaLLK~LEEpP~~~~fIl~tt~------------~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~E 195 (824)
T PRK07764 128 EAHMVTPQGFNALLKIVEEPPEHLKFIFATTE------------PDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQE 195 (824)
T ss_pred chhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC------------hhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999887 88888876 678999999999999999999999998888654
Q ss_pred ---CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 259 ---MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 259 ---i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
++++++.+|++.+ +||+|.++++|+++..++ +...||.++|..+++.
T Consensus 196 Gv~id~eal~lLa~~s-gGdlR~Al~eLEKLia~~---~~~~IT~e~V~allg~ 245 (824)
T PRK07764 196 GVPVEPGVLPLVIRAG-GGSVRDSLSVLDQLLAGA---GPEGVTYERAVALLGV 245 (824)
T ss_pred CCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhhc---CCCCCCHHHHHHHhcC
Confidence 8999999999999 999999999999976443 3456999999988753
No 29
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.96 E-value=3.3e-28 Score=264.75 Aligned_cols=230 Identities=23% Similarity=0.307 Sum_probs=182.1
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
..|++++||++ |+++|||+++.+ .|++++++|++++. .+|+||+..|||| |++. |+.++|. ..
T Consensus 4 ~vLarKYRP~t-FddIIGQe~vv~---~L~~ai~~~rl~Ha-~Lf~GP~GvGKTTlAriL-------Ak~LnC~----~~ 67 (709)
T PRK08691 4 QVLARKWRPKT-FADLVGQEHVVK---ALQNALDEGRLHHA-YLLTGTRGVGKTTIARIL-------AKSLNCE----NA 67 (709)
T ss_pred hhHHHHhCCCC-HHHHcCcHHHHH---HHHHHHHcCCCCeE-EEEECCCCCcHHHHHHHH-------HHHhccc----CC
Confidence 45788999999 899999999985 58999999999872 3689998448875 6655 3444441 12
Q ss_pred ccccCCCcccceeee--eeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTV--VHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei--~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
...-|||+|..|+.+ ..+++++|+|.++.+ |+ ++||+.++.+ ......|+ ++|+||||+
T Consensus 68 ~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~--gV------------d~IRelle~a-~~~P~~gk----~KVIIIDEa 128 (709)
T PRK08691 68 QHGEPCGVCQSCTQIDAGRYVDLLEIDAASNT--GI------------DNIREVLENA-QYAPTAGK----YKVYIIDEV 128 (709)
T ss_pred CCCCCCcccHHHHHHhccCccceEEEeccccC--CH------------HHHHHHHHHH-HhhhhhCC----cEEEEEECc
Confidence 233455555555554 447899999976543 22 7899887654 22223343 589999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|+|+..+|++|+|.+|+++.+ +||++|+. ++++|.+++|||+.|+|++++.++|.+.|+.++
T Consensus 129 d~Ls~~A~NALLKtLEEPp~~v~fILaTtd------------~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi 196 (709)
T PRK08691 129 HMLSKSAFNAMLKTLEEPPEHVKFILATTD------------PHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI 196 (709)
T ss_pred cccCHHHHHHHHHHHHhCCCCcEEEEEeCC------------ccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999998876 78888877 788999999999999999999999999888655
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
++++++.+|++.+ +||+|+|+++|+++..+ +...|+.++|..+++.
T Consensus 197 ~id~eAL~~Ia~~A-~GslRdAlnLLDqaia~----g~g~It~e~V~~lLG~ 243 (709)
T PRK08691 197 AYEPPALQLLGRAA-AGSMRDALSLLDQAIAL----GSGKVAENDVRQMIGA 243 (709)
T ss_pred CcCHHHHHHHHHHh-CCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHHcc
Confidence 9999999999999 99999999999998654 3457999999998764
No 30
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.95 E-value=4.6e-28 Score=259.68 Aligned_cols=229 Identities=21% Similarity=0.254 Sum_probs=179.5
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
..|++++||++ |+++|||+|+.+ .|.+++.+++++|. .+|+||+..|||| |++.+ +.++|.. .
T Consensus 4 ~~l~~k~rP~~-f~divGq~~v~~---~L~~~i~~~~~~ha-~Lf~Gp~G~GKTt~A~~lA-------k~l~c~~----~ 67 (527)
T PRK14969 4 QVLARKWRPKS-FSELVGQEHVVR---ALTNALEQQRLHHA-YLFTGTRGVGKTTLARILA-------KSLNCET----G 67 (527)
T ss_pred HHHHHHhCCCc-HHHhcCcHHHHH---HHHHHHHcCCCCEE-EEEECCCCCCHHHHHHHHH-------HHhcCCC----C
Confidence 35788999998 899999999986 48999999999982 2689998558876 66553 3343311 1
Q ss_pred ccccCCCcccceeeee--eccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVV--HTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~--~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
...-|||+|..|+++. .+++++++|.+++. |+ +++|+.++.+. .....| .++|+||||+
T Consensus 68 ~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~--~v------------d~ir~l~~~~~-~~p~~~----~~kVvIIDEa 128 (527)
T PRK14969 68 VTATPCGVCSACLEIDSGRFVDLIEVDAASNT--QV------------DAMRELLDNAQ-YAPTRG----RFKVYIIDEV 128 (527)
T ss_pred CCCCCCCCCHHHHHHhcCCCCceeEeeccccC--CH------------HHHHHHHHHHh-hCcccC----CceEEEEcCc
Confidence 1123556665555544 47889999876532 23 88998776542 222233 4689999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|+|+.+++|+|+|++|+++.+ +||++|+. +.++|++++|||++|+|++++.+++.+.|...+
T Consensus 129 d~ls~~a~naLLK~LEepp~~~~fIL~t~d------------~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi 196 (527)
T PRK14969 129 HMLSKSAFNAMLKTLEEPPEHVKFILATTD------------PQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI 196 (527)
T ss_pred ccCCHHHHHHHHHHHhCCCCCEEEEEEeCC------------hhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999998877 68888876 778999999999999999999999988777543
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++.+|++.+ +||+|+|+++|+++..+ +...|+.++|+++.+
T Consensus 197 ~~~~~al~~la~~s-~Gslr~al~lldqai~~----~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 197 PFDATALQLLARAA-AGSMRDALSLLDQAIAY----GGGTVNESEVRAMLG 242 (527)
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHHC
Confidence 8999999999999 99999999999998654 345799999998875
No 31
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.95 E-value=1.2e-27 Score=258.68 Aligned_cols=311 Identities=17% Similarity=0.220 Sum_probs=214.4
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.+|++++||++ |+++|||+++. ..|.+++++|++++ -.+|+|||..|||+ |++.+ +.+.|.. .
T Consensus 4 ~~la~KyRP~s-f~dIiGQe~v~---~~L~~ai~~~ri~h-a~Lf~GPpG~GKTtiArilA-------k~L~C~~----~ 67 (624)
T PRK14959 4 ASLTARYRPQT-FAEVAGQETVK---AILSRAAQENRVAP-AYLFSGTRGVGKTTIARIFA-------KALNCET----A 67 (624)
T ss_pred chHHHHhCCCC-HHHhcCCHHHH---HHHHHHHHcCCCCc-eEEEECCCCCCHHHHHHHHH-------HhccccC----C
Confidence 58899999999 89999999995 67999999999876 35689999558875 77653 3344311 1
Q ss_pred ccccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
...-|||.|..|+.+.+ +.++++||.+.++ |+ +++|+.+ +.+.....++ .++|+||||+
T Consensus 68 ~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~~--~I------------d~iR~L~-~~~~~~p~~g----~~kVIIIDEa 128 (624)
T PRK14959 68 PTGEPCNTCEQCRKVTQGMHVDVVEIDGASNR--GI------------DDAKRLK-EAIGYAPMEG----RYKVFIIDEA 128 (624)
T ss_pred CCCCCCcccHHHHHHhcCCCCceEEEeccccc--CH------------HHHHHHH-HHHHhhhhcC----CceEEEEECh
Confidence 12224555555555544 6788899765332 22 7787643 3333333344 3589999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|+|+.+++|+|+|++|+++.. +||++|+. +++++.+|+|||++|+|++|+.+++.++|+..+
T Consensus 129 d~Lt~~a~naLLk~LEEP~~~~ifILaTt~------------~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi 196 (624)
T PRK14959 129 HMLTREAFNALLKTLEEPPARVTFVLATTE------------PHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV 196 (624)
T ss_pred HhCCHHHHHHHHHHhhccCCCEEEEEecCC------------hhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999998765 67787776 778999999999999999999999999888533
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhcccCCC
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMFDSTVTGGA 337 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~D~~~s~~~L~~~~~~~l~~~~~~~~~ 337 (448)
++++++++|++.+ +||+|+|+++|+.+. + .+...|+.++|++++... +.....++++.. . .++.
T Consensus 197 ~id~eal~lIA~~s-~GdlR~Al~lLeqll--~--~g~~~It~d~V~~~lg~~-~~e~vfeLl~AL----~-----~~D~ 261 (624)
T PRK14959 197 DYDPAAVRLIARRA-AGSVRDSMSLLGQVL--A--LGESRLTIDGARGVLGLA-GQELFLRLMEAL----A-----AQDC 261 (624)
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHH--H--hcCCCcCHHHHHHHhCCC-CHHHHHHHHHHH----h-----cCCH
Confidence 9999999999999 999999999999774 2 244579999999888642 333232333210 0 0110
Q ss_pred CCccc-ccccccccCchhhHHHHHHHHhcchhhHHHhhhccccccccccCCCCCCChHHHHHHHHHHHHHHH
Q psy1686 338 GDTKM-EVDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWRE 408 (448)
Q Consensus 338 ~~~~l-E~e~~v~lp~g~v~k~ke~v~~vTLhdlD~~na~~~g~~~l~~~~~~EI~~e~R~~i~~~v~~~i~ 408 (448)
.. .+ -...+.+ .|+ ....++..+..+.+|++..+..+...+ ....++++.++++....++|=.
T Consensus 262 ~a-al~~l~~Ll~--~g~--d~~~iL~~Ll~~~RdLLl~k~~~~~~~---~~l~i~~~~~~~~~~~A~~~s~ 325 (624)
T PRK14959 262 LG-VANVVRELLD--RGV--DMGFFLRELVATWRNLFMLRQAGEAAL---ASLDLPEDEARQWLGWAKRFEP 325 (624)
T ss_pred HH-HHHHHHHHHH--cCC--CHHHHHHHHHHHHHHHHHhhhccccch---hhcccCHHHHHHHHHHHHhCCH
Confidence 00 00 0011111 121 245667888889999988764432211 1235677877777777777643
No 32
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.95 E-value=2.1e-27 Score=253.93 Aligned_cols=228 Identities=21% Similarity=0.275 Sum_probs=177.0
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCc
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKD 107 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~f 107 (448)
.|++++||++ |+++|||+++. ..|.+++++|+++|. ..++|||..|||+ +++.+. .+.|. ....+
T Consensus 3 ~l~~KyRP~~-fdeiiGqe~v~---~~L~~~I~~grl~ha-yLf~Gp~G~GKTt~Ar~LAk-------~L~c~--~~~~~ 68 (535)
T PRK08451 3 ALALKYRPKH-FDELIGQESVS---KTLSLALDNNRLAHA-YLFSGLRGSGKTSSARIFAR-------ALVCE--QGPSS 68 (535)
T ss_pred cHHHHHCCCC-HHHccCcHHHH---HHHHHHHHcCCCCee-EEEECCCCCcHHHHHHHHHH-------HhcCC--CCCCC
Confidence 5788999998 89999999996 458999999999882 2689999558875 554422 22220 11123
Q ss_pred cccCCCcccceeee--eeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccC
Q psy1686 108 LRCPDGELQKRKTV--VHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVH 185 (448)
Q Consensus 108 v~~p~ge~~k~kei--~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH 185 (448)
. |||.|..|+.+ ..+.+++++|.++.+ |+ ++||+.+.... .....+ .++|++|||+|
T Consensus 69 ~--pC~~C~~C~~~~~~~h~dv~eldaas~~--gI------------d~IRelie~~~-~~P~~~----~~KVvIIDEad 127 (535)
T PRK08451 69 T--PCDTCIQCQSALENRHIDIIEMDAASNR--GI------------DDIRELIEQTK-YKPSMA----RFKIFIIDEVH 127 (535)
T ss_pred C--CCcccHHHHHHhhcCCCeEEEecccccc--CH------------HHHHHHHHHHh-hCcccC----CeEEEEEECcc
Confidence 3 45555555544 447788888876554 33 88998886531 111223 35899999999
Q ss_pred CCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------
Q psy1686 186 MLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------ 258 (448)
Q Consensus 186 ~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------ 258 (448)
+|+.++|++|+|++|+|+.+ +||++|+. ++++|++++|||++|+|+|++.+++.+.|..++
T Consensus 128 ~Lt~~A~NALLK~LEEpp~~t~FIL~ttd------------~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~ 195 (535)
T PRK08451 128 MLTKEAFNALLKTLEEPPSYVKFILATTD------------PLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS 195 (535)
T ss_pred cCCHHHHHHHHHHHhhcCCceEEEEEECC------------hhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999876 78888876 789999999999999999999999988887555
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++.+|++.+ +||+|+|+++|+++..++ ...||.++|.++++
T Consensus 196 i~~~Al~~Ia~~s-~GdlR~alnlLdqai~~~----~~~It~~~V~~~lg 240 (535)
T PRK08451 196 YEPEALEILARSG-NGSLRDTLTLLDQAIIYC----KNAITESKVADMLG 240 (535)
T ss_pred CCHHHHHHHHHHc-CCcHHHHHHHHHHHHHhc----CCCCCHHHHHHHhC
Confidence 8999999999999 999999999999987664 34688888887754
No 33
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.95 E-value=5.3e-27 Score=254.32 Aligned_cols=233 Identities=20% Similarity=0.220 Sum_probs=181.0
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCC-
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVT- 105 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~- 105 (448)
.+|++..||++ |+++|||+++++. |.+++++|++++. .+|+||+..|||| |++.++. +.|......
T Consensus 12 ~~la~KyRP~~-f~dliGq~~~v~~---L~~~~~~gri~ha-~L~~Gp~GvGKTt~Ar~lAk~-------L~c~~~~~~~ 79 (598)
T PRK09111 12 RVLARKYRPQT-FDDLIGQEAMVRT---LTNAFETGRIAQA-FMLTGVRGVGKTTTARILARA-------LNYEGPDGDG 79 (598)
T ss_pred hhHHhhhCCCC-HHHhcCcHHHHHH---HHHHHHcCCCCce-EEEECCCCCCHHHHHHHHHHh-------hCcCCccccC
Confidence 46889999998 8999999999854 9999999999973 4689998558875 7766433 333100000
Q ss_pred CccccCCCcccceee--eeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEec
Q psy1686 106 KDLRCPDGELQKRKT--VVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDE 183 (448)
Q Consensus 106 ~fv~~p~ge~~k~ke--i~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDE 183 (448)
.....|||.|..|+. ...+++++++|.++.. |+ ++||+.++.+ ......+ .++|+||||
T Consensus 80 ~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~--gv------------d~IReIie~~-~~~P~~a----~~KVvIIDE 140 (598)
T PRK09111 80 GPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHT--GV------------DDIREIIESV-RYRPVSA----RYKVYIIDE 140 (598)
T ss_pred CCccccCcccHHHHHHhcCCCCceEEecccccC--CH------------HHHHHHHHHH-HhchhcC----CcEEEEEEC
Confidence 111234555555544 4558999999987542 33 8999877654 3332333 358999999
Q ss_pred cCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc----
Q psy1686 184 VHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL---- 258 (448)
Q Consensus 184 VH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra---- 258 (448)
+|+|+.+++|+|+|++|+|+.+ +||++|+. +.+++++++|||++|.|++++.+++.+.|+..+
T Consensus 141 ad~Ls~~a~naLLKtLEePp~~~~fIl~tte------------~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~keg 208 (598)
T PRK09111 141 VHMLSTAAFNALLKTLEEPPPHVKFIFATTE------------IRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEG 208 (598)
T ss_pred hHhCCHHHHHHHHHHHHhCCCCeEEEEEeCC------------hhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 9999999999999999999887 78888876 667999999999999999999999999888654
Q ss_pred --CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 --MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 --i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|+|+++|+++..+ +.+.||.++|+.+++
T Consensus 209 i~i~~eAl~lIa~~a-~Gdlr~al~~Ldkli~~----g~g~It~e~V~~llg 255 (598)
T PRK09111 209 VEVEDEALALIARAA-EGSVRDGLSLLDQAIAH----GAGEVTAEAVRDMLG 255 (598)
T ss_pred CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhh----cCCCcCHHHHHHHhC
Confidence 9999999999999 99999999999987654 234799999998875
No 34
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.94 E-value=2.4e-27 Score=251.04 Aligned_cols=228 Identities=22% Similarity=0.301 Sum_probs=174.4
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCc
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKD 107 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~f 107 (448)
.|++++||++ ++++|||+|+. ..|++++.+|++++. ++++|||..|||| |++.++ .++|. ....+
T Consensus 3 ~l~~kyRP~~-~~divGq~~i~---~~L~~~i~~~~l~~~-~Lf~GPpGtGKTTlA~~lA~-------~l~~~--~~~~~ 68 (472)
T PRK14962 3 ALYRKYRPKT-FSEVVGQDHVK---KLIINALKKNSISHA-YIFAGPRGTGKTTVARILAK-------SLNCE--NRKGV 68 (472)
T ss_pred hhHHHHCCCC-HHHccCcHHHH---HHHHHHHHcCCCCeE-EEEECCCCCCHHHHHHHHHH-------Hhccc--cCCCC
Confidence 3678999999 89999999995 569999999999762 4789999558876 776533 33330 11224
Q ss_pred cccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccC
Q psy1686 108 LRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVH 185 (448)
Q Consensus 108 v~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH 185 (448)
. |||.|..|+.+.. ..+++++|++.++ |+ +++|+..+.+ ......+ .++|+||||+|
T Consensus 69 ~--pc~~c~~c~~i~~g~~~dv~el~aa~~~--gi------------d~iR~i~~~~-~~~p~~~----~~kVvIIDE~h 127 (472)
T PRK14962 69 E--PCNECRACRSIDEGTFMDVIELDAASNR--GI------------DEIRKIRDAV-GYRPMEG----KYKVYIIDEVH 127 (472)
T ss_pred C--CCcccHHHHHHhcCCCCccEEEeCcccC--CH------------HHHHHHHHHH-hhChhcC----CeEEEEEEChH
Confidence 4 4555555555544 5677888776443 22 7888655443 2222233 35899999999
Q ss_pred CCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------
Q psy1686 186 MLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------ 258 (448)
Q Consensus 186 ~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------ 258 (448)
+|+.++|++|++++|+++.. +||++|+. +.+++++++|||.++.|+|++.+++..+|+.++
T Consensus 128 ~Lt~~a~~~LLk~LE~p~~~vv~Ilattn------------~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~ 195 (472)
T PRK14962 128 MLTKEAFNALLKTLEEPPSHVVFVLATTN------------LEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE 195 (472)
T ss_pred HhHHHHHHHHHHHHHhCCCcEEEEEEeCC------------hHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC
Confidence 99999999999999998765 55566654 568999999999999999999999999998655
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++|+++|++.+ +||+|+|+|.|+.+..++ ...||.++|+++++
T Consensus 196 i~~eal~~Ia~~s-~GdlR~aln~Le~l~~~~----~~~It~e~V~~~l~ 240 (472)
T PRK14962 196 IDREALSFIAKRA-SGGLRDALTMLEQVWKFS----EGKITLETVHEALG 240 (472)
T ss_pred CCHHHHHHHHHHh-CCCHHHHHHHHHHHHHhc----CCCCCHHHHHHHHc
Confidence 9999999999999 999999999999876543 22499999998875
No 35
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.94 E-value=4.5e-27 Score=257.59 Aligned_cols=228 Identities=23% Similarity=0.359 Sum_probs=177.1
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
++|+++.||+. |+++|||+++.+ .|+++|++|+++|. ..++|||+.|||+ |++.+. .+.| +...
T Consensus 6 ~~l~~KyRP~~-f~dIiGQe~~v~---~L~~aI~~~rl~HA-YLF~GP~GtGKTt~AriLAk-------~LnC---~~~~ 70 (725)
T PRK07133 6 KALYRKYRPKT-FDDIVGQDHIVQ---TLKNIIKSNKISHA-YLFSGPRGTGKTSVAKIFAN-------ALNC---SHKT 70 (725)
T ss_pred hhHHHHhCCCC-HHHhcCcHHHHH---HHHHHHHcCCCCeE-EEEECCCCCcHHHHHHHHHH-------Hhcc---cccC
Confidence 56788999999 899999999975 59999999999983 2689999558875 776633 3333 1111
Q ss_pred ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 107 DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
...-|||.|..| ...+++++++|.+++. |+ +++|+.+..+ ......| .++|++|||+|+
T Consensus 71 ~~~~pC~~C~~~--~~~~~Dvieidaasn~--~v------------d~IReLie~~-~~~P~~g----~~KV~IIDEa~~ 129 (725)
T PRK07133 71 DLLEPCQECIEN--VNNSLDIIEMDAASNN--GV------------DEIRELIENV-KNLPTQS----KYKIYIIDEVHM 129 (725)
T ss_pred CCCCchhHHHHh--hcCCCcEEEEeccccC--CH------------HHHHHHHHHH-HhchhcC----CCEEEEEEChhh
Confidence 122255666554 3456777888775432 22 7788877654 3333344 368999999999
Q ss_pred CCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------C
Q psy1686 187 LDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------M 259 (448)
Q Consensus 187 L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i 259 (448)
|+.+++++|+|++|+|+.+ +||++|+. ++++|++++|||++++|+|++.+++.+.|..++ +
T Consensus 130 LT~~A~NALLKtLEEPP~~tifILaTte------------~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i 197 (725)
T PRK07133 130 LSKSAFNALLKTLEEPPKHVIFILATTE------------VHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISY 197 (725)
T ss_pred CCHHHHHHHHHHhhcCCCceEEEEEcCC------------hhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999877 77888876 789999999999999999999999999887544 8
Q ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 260 QTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 260 ~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+++++.+|++.+ +||+|.|+++|+.+..++ ...|+.++|+++++
T Consensus 198 d~eAl~~LA~lS-~GslR~AlslLekl~~y~----~~~It~e~V~ellg 241 (725)
T PRK07133 198 EKNALKLIAKLS-SGSLRDALSIAEQVSIFG----NNKITLKNVEELFG 241 (725)
T ss_pred CHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc----cCCCCHHHHHHHHc
Confidence 999999999999 999999999999886553 23599999988654
No 36
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.94 E-value=1.3e-26 Score=249.79 Aligned_cols=229 Identities=21% Similarity=0.269 Sum_probs=177.3
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
..+++++||++ |+++|||+++++ .|.+++++|+++|. .+++||++.|||| |++.+ +.+.|.. .
T Consensus 4 ~~~~~KyRP~~-F~dIIGQe~iv~---~L~~aI~~~rl~hA-~Lf~GP~GvGKTTlA~~lA-------k~L~C~~----~ 67 (605)
T PRK05896 4 ITFYRKYRPHN-FKQIIGQELIKK---ILVNAILNNKLTHA-YIFSGPRGIGKTSIAKIFA-------KAINCLN----P 67 (605)
T ss_pred hhHHHHhCCCC-HHHhcCcHHHHH---HHHHHHHcCCCCce-EEEECCCCCCHHHHHHHHH-------HHhcCCC----C
Confidence 36788999999 899999999974 58999999999862 4589999558876 66552 3333311 1
Q ss_pred ccccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
...-|||.|..|+.+.. +.+++++|.++.. |+ +++|+.++... .....+ .++|++|||+
T Consensus 68 ~~~~~Cg~C~sCr~i~~~~h~DiieIdaas~i--gV------------d~IReIi~~~~-~~P~~~----~~KVIIIDEa 128 (605)
T PRK05896 68 KDGDCCNSCSVCESINTNQSVDIVELDAASNN--GV------------DEIRNIIDNIN-YLPTTF----KYKVYIIDEA 128 (605)
T ss_pred CCCCCCcccHHHHHHHcCCCCceEEecccccc--CH------------HHHHHHHHHHH-hchhhC----CcEEEEEech
Confidence 11235566655555544 6888899876432 23 78988776543 222233 3589999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|+|+.+++++|++++|+|+.+ +||++|+. +++++++++|||++++|.|++.+++...|+.++
T Consensus 129 d~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~------------~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi 196 (605)
T PRK05896 129 HMLSTSAWNALLKTLEEPPKHVVFIFATTE------------FQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI 196 (605)
T ss_pred HhCCHHHHHHHHHHHHhCCCcEEEEEECCC------------hHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999865 77788876 789999999999999999999999998888644
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|+|+++|+.+..++ + ..|+.++|..+.+
T Consensus 197 ~Is~eal~~La~lS-~GdlR~AlnlLekL~~y~---~-~~It~e~V~ellg 242 (605)
T PRK05896 197 KIEDNAIDKIADLA-DGSLRDGLSILDQLSTFK---N-SEIDIEDINKTFG 242 (605)
T ss_pred CCCHHHHHHHHHHc-CCcHHHHHHHHHHHHhhc---C-CCCCHHHHHHHhc
Confidence 9999999999999 999999999999976553 2 3499999988754
No 37
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.94 E-value=7.5e-27 Score=251.82 Aligned_cols=229 Identities=21% Similarity=0.212 Sum_probs=179.3
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
..|+.++||+. |+++|||+|+.+. |.++|++|+++| ..+|+|||..|||+ |++. |+.+.|. ..
T Consensus 4 ~~l~~kyRP~~-f~diiGqe~iv~~---L~~~i~~~~i~h-ayLf~Gp~G~GKTt~Ar~l-------Ak~L~c~----~~ 67 (563)
T PRK06647 4 RGTATKRRPRD-FNSLEGQDFVVET---LKHSIESNKIAN-AYIFSGPRGVGKTSSARAF-------ARCLNCV----NG 67 (563)
T ss_pred HHHHHHhCCCC-HHHccCcHHHHHH---HHHHHHcCCCCe-EEEEECCCCCCHHHHHHHH-------HHhhccc----cC
Confidence 45788999999 8999999999864 999999999987 34689999558875 6655 3334431 11
Q ss_pred ccccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
....|||+|..|+++.. +.+++++|.+.+. |+ +++|+.+..+ ......+ .++|+||||+
T Consensus 68 ~~~~pC~~C~~C~~i~~~~~~dv~~idgas~~--~v------------ddIr~l~e~~-~~~p~~~----~~KVvIIDEa 128 (563)
T PRK06647 68 PTPMPCGECSSCKSIDNDNSLDVIEIDGASNT--SV------------QDVRQIKEEI-MFPPASS----RYRVYIIDEV 128 (563)
T ss_pred CCCCCCccchHHHHHHcCCCCCeEEecCcccC--CH------------HHHHHHHHHH-HhchhcC----CCEEEEEECh
Confidence 22347788888877665 4666777654321 22 7888766544 2233334 3689999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|+|+.+++|+|+|++|+|+.+ +||++|+. +.+++++|+|||+++.|++++.+++.+.|+..+
T Consensus 129 ~~Ls~~a~naLLK~LEepp~~~vfI~~tte------------~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi 196 (563)
T PRK06647 129 HMLSNSAFNALLKTIEEPPPYIVFIFATTE------------VHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI 196 (563)
T ss_pred hhcCHHHHHHHHHhhccCCCCEEEEEecCC------------hHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999998876 77777776 688999999999999999999999999988654
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++.+|++.+ +||+|.|+++|+++..++ ...||.++|+++++
T Consensus 197 ~id~eAl~lLa~~s-~GdlR~alslLdklis~~----~~~It~e~V~~llg 242 (563)
T PRK06647 197 KYEDEALKWIAYKS-TGSVRDAYTLFDQVVSFS----DSDITLEQIRSKMG 242 (563)
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 8999999999999 999999999999886553 34699999998764
No 38
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.94 E-value=1.8e-26 Score=245.16 Aligned_cols=229 Identities=21% Similarity=0.258 Sum_probs=179.1
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.|+++..||++ |+++|||+++.+ .|.++|++|+++|.+ .|+|||..|||| |++.+.. .+|..+ ..
T Consensus 4 ~~~~~kyRP~~-f~diiGq~~i~~---~L~~~i~~~~i~hay-Lf~Gp~G~GKTtlAr~lAk~-------L~c~~~--~~ 69 (486)
T PRK14953 4 IPFARKYRPKF-FKEVIGQEIVVR---ILKNAVKLQRVSHAY-IFAGPRGTGKTTIARILAKV-------LNCLNP--QE 69 (486)
T ss_pred hHHHHhhCCCc-HHHccChHHHHH---HHHHHHHcCCCCeEE-EEECCCCCCHHHHHHHHHHH-------hcCcCC--CC
Confidence 47888999998 899999999975 589999999999832 579999558875 6655332 332111 11
Q ss_pred ccccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
.. |||.|..|..+.. +++++++|.++++ |+ +++|+.++.+ ......| .++|+||||+
T Consensus 70 ~~--pc~~c~nc~~i~~g~~~d~~eidaas~~--gv------------d~ir~I~~~~-~~~P~~~----~~KVvIIDEa 128 (486)
T PRK14953 70 GE--PCGKCENCVEIDKGSFPDLIEIDAASNR--GI------------DDIRALRDAV-SYTPIKG----KYKVYIIDEA 128 (486)
T ss_pred CC--CCCccHHHHHHhcCCCCcEEEEeCccCC--CH------------HHHHHHHHHH-HhCcccC----CeeEEEEECh
Confidence 12 5566655555544 7889999887654 33 7788755443 3333344 3699999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|+|+.++|++|++++|+|+.. +||++|+. +++++++++|||+++.|+|++.+++...|..++
T Consensus 129 d~Lt~~a~naLLk~LEepp~~~v~Il~tt~------------~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi 196 (486)
T PRK14953 129 HMLTKEAFNALLKTLEEPPPRTIFILCTTE------------YDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI 196 (486)
T ss_pred hhcCHHHHHHHHHHHhcCCCCeEEEEEECC------------HHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999998765 88888876 778999999999999999999999999988765
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|.|+++|+.+..++ ...||.++|+++.+
T Consensus 197 ~id~~al~~La~~s-~G~lr~al~~Ldkl~~~~----~~~It~~~V~~~lg 242 (486)
T PRK14953 197 EYEEKALDLLAQAS-EGGMRDAASLLDQASTYG----EGKVTIKVVEEFLG 242 (486)
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc----CCCcCHHHHHHHhC
Confidence 8999999999999 999999999999987543 44799999998653
No 39
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.94 E-value=3.6e-26 Score=248.84 Aligned_cols=311 Identities=17% Similarity=0.200 Sum_probs=208.2
Q ss_pred CCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCcc
Q psy1686 30 LDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDL 108 (448)
Q Consensus 30 L~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv 108 (448)
.++++||.+ |+++|||+++.+ .|.++|++|++++. .+|+|||..|||+ |++.+ +.+.|.. ......
T Consensus 7 ~~~kyRP~~-f~~viGq~~~~~---~L~~~i~~~~l~ha-yLf~Gp~G~GKtt~A~~lA-------k~l~c~~-~~~~~~ 73 (614)
T PRK14971 7 SARKYRPST-FESVVGQEALTT---TLKNAIATNKLAHA-YLFCGPRGVGKTTCARIFA-------KTINCQN-LTADGE 73 (614)
T ss_pred HHHHHCCCC-HHHhcCcHHHHH---HHHHHHHcCCCCee-EEEECCCCCCHHHHHHHHH-------HHhCCCC-CCCCCC
Confidence 467899998 899999999975 48999999999883 3589999558875 55542 3333311 011233
Q ss_pred ccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCC
Q psy1686 109 RCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLD 188 (448)
Q Consensus 109 ~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~ 188 (448)
+|..|+.|+.-....+..+|++|..... ++ +++|+.+..+. .....+ .++|++|||+|+|+
T Consensus 74 ~Cg~C~sC~~~~~~~~~n~~~ld~~~~~--~v------------d~Ir~li~~~~-~~P~~~----~~KVvIIdea~~Ls 134 (614)
T PRK14971 74 ACNECESCVAFNEQRSYNIHELDAASNN--SV------------DDIRNLIEQVR-IPPQIG----KYKIYIIDEVHMLS 134 (614)
T ss_pred CCCcchHHHHHhcCCCCceEEecccccC--CH------------HHHHHHHHHHh-hCcccC----CcEEEEEECcccCC
Confidence 4444444444344446888899875332 12 78998886652 222334 35899999999999
Q ss_pred HHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------CCH
Q psy1686 189 IECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQT 261 (448)
Q Consensus 189 ~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i~d 261 (448)
.+++++|+|++|+|+.+ +||++|+. .++|.++|+|||++++|++++.+++...|...+ +++
T Consensus 135 ~~a~naLLK~LEepp~~tifIL~tt~------------~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~ 202 (614)
T PRK14971 135 QAAFNAFLKTLEEPPSYAIFILATTE------------KHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEP 202 (614)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEeCC------------chhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999998876 77888876 688999999999999999999999998888544 899
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhcccCCCCCcc
Q psy1686 262 DGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMFDSTVTGGAGDTK 341 (448)
Q Consensus 262 eal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~D~~~s~~~L~~~~~~~l~~~~~~~~~~~~~ 341 (448)
+++++|++.+ +||+|+|+++|+.+..++ +. .|+.++|.+.+.. .+.....++++ .+..++...+-
T Consensus 203 ~al~~La~~s-~gdlr~al~~Lekl~~y~---~~-~It~~~V~~~l~~-~~~~~iF~L~d---------ai~~~~~~~al 267 (614)
T PRK14971 203 EALNVIAQKA-DGGMRDALSIFDQVVSFT---GG-NITYKSVIENLNI-LDYDYYFRLTD---------ALLAGKVSDSL 267 (614)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHhc---cC-CccHHHHHHHhCC-CCHHHHHHHHH---------HHHcCCHHHHH
Confidence 9999999999 999999999999987664 22 3998888776642 12222222111 01011100000
Q ss_pred cccccccccCchhhHHHHHHHHhcchhhHHHhhhccccccccccCCCCCCChHHHHHHHHHHHHHHH
Q psy1686 342 MEVDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWRE 408 (448)
Q Consensus 342 lE~e~~v~lp~g~v~k~ke~v~~vTLhdlD~~na~~~g~~~l~~~~~~EI~~e~R~~i~~~v~~~i~ 408 (448)
.-...+...-. .-..++..++.|-+|++-.+.... ....++++.+++.+.+.+++|=.
T Consensus 268 ~ll~~Ll~~g~----~~~~iL~~L~~~fRdlL~~K~~~~-----~~ll~v~~~~~~~~~~qa~~~s~ 325 (614)
T PRK14971 268 LLFDEILNKGF----DGSHFITGLASHFRDLLVCKDAAT-----LQLLEVGESIRQRYLEQAQKCPM 325 (614)
T ss_pred HHHHHHHHcCC----CHHHHHHHHHHHHHHHHHhhcccc-----cccccCCHHHHHHHHHHHHhCCH
Confidence 00011111011 112357778888888888764311 12246677777777666666644
No 40
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.94 E-value=7.7e-26 Score=245.91 Aligned_cols=236 Identities=17% Similarity=0.232 Sum_probs=179.2
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCC-C-
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADV-T- 105 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~-~- 105 (448)
.|++++||.+ |+++|||+++.+ .|++++++|+++| ..+|+||+..|||| |++.+ +.+.|..+.. .
T Consensus 5 ~l~~kyRP~~-f~eivGQe~i~~---~L~~~i~~~ri~h-a~Lf~Gp~GvGKttlA~~lA-------k~L~c~~~~~~~~ 72 (620)
T PRK14954 5 VIARKYRPSK-FADITAQEHITH---TIQNSLRMDRVGH-GYIFSGLRGVGKTTAARVFA-------KAVNCQRMIDDPV 72 (620)
T ss_pred HHHHHHCCCC-HHHhcCcHHHHH---HHHHHHHcCCCCe-eEEEECCCCCCHHHHHHHHH-------HHhCCCCcCCccc
Confidence 4678999999 899999999985 4999999999987 24588999558876 66553 3333311000 0
Q ss_pred --CccccCCCcccceeee--eeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEE
Q psy1686 106 --KDLRCPDGELQKRKTV--VHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFI 181 (448)
Q Consensus 106 --~fv~~p~ge~~k~kei--~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfI 181 (448)
+-+..|||.|..|+.+ ..+.+++++|..++. |+ ++||+.+..... ....| .++|+||
T Consensus 73 ~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~--~v------------d~Ir~l~e~~~~-~P~~~----~~KVvII 133 (620)
T PRK14954 73 YLQEVTEPCGECESCRDFDAGTSLNISEFDAASNN--SV------------DDIRQLRENVRY-GPQKG----RYRVYII 133 (620)
T ss_pred cccccCCCCccCHHHHHHhccCCCCeEEecccccC--CH------------HHHHHHHHHHHh-hhhcC----CCEEEEE
Confidence 0012466666666655 457777888765432 22 889887655432 22334 3589999
Q ss_pred eccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc--
Q psy1686 182 DEVHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-- 258 (448)
Q Consensus 182 DEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra-- 258 (448)
||+|+|+.+++++|+|++|+|+.+ +||++|+. ++++++++.|||++|.|++++.+++...|...+
T Consensus 134 dEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~------------~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~ 201 (620)
T PRK14954 134 DEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTE------------LHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRA 201 (620)
T ss_pred eChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC------------hhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999876 77888776 689999999999999999999999988887543
Q ss_pred ----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhh-hhCCCcccHHHHHHHHH
Q psy1686 259 ----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCR-RRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 ----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~-~~~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|+|++.|+.+..++. ...+..|+.++|.+++.
T Consensus 202 egi~I~~eal~~La~~s-~Gdlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv~ 255 (620)
T PRK14954 202 EGIQIDADALQLIARKA-QGSMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELLN 255 (620)
T ss_pred cCCCCCHHHHHHHHHHh-CCCHHHHHHHHHHHHHhccccccCCccCHHHHHHHHc
Confidence 9999999999999 9999999999998877651 12245799999988764
No 41
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.93 E-value=2e-25 Score=231.67 Aligned_cols=316 Identities=17% Similarity=0.201 Sum_probs=209.4
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCcc-CCC-
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLA-DVT- 105 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~-~~~- 105 (448)
.|++++||+. ++++|||+++.+ .|++++++|+++| ..+|+|||..|||| |++.+.. +.|..+ ++.
T Consensus 5 ~l~~k~RP~~-~~eiiGq~~~~~---~L~~~~~~~~~~h-a~lf~Gp~G~GKtt~A~~~a~~-------l~c~~~~~~~~ 72 (397)
T PRK14955 5 VIARKYRPKK-FADITAQEHITR---TIQNSLRMGRVGH-GYIFSGLRGVGKTTAARVFAKA-------VNCQRMIDDAD 72 (397)
T ss_pred HHHHhcCCCc-HhhccChHHHHH---HHHHHHHhCCcce-eEEEECCCCCCHHHHHHHHHHH-------hcCCCCcCccc
Confidence 4788999999 899999999975 6999999999987 24589999558876 6655332 222000 000
Q ss_pred --CccccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEE
Q psy1686 106 --KDLRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFI 181 (448)
Q Consensus 106 --~fv~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfI 181 (448)
+.+..|||+|..|+.+.+ +.+++++|..... | . ++||+.+.... .....+ .++|+||
T Consensus 73 ~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~--~-------i-----d~Ir~l~~~~~-~~p~~~----~~kvvII 133 (397)
T PRK14955 73 YLQEVTEPCGECESCRDFDAGTSLNISEFDAASNN--S-------V-----DDIRLLRENVR-YGPQKG----RYRVYII 133 (397)
T ss_pred ccccCCCCCCCCHHHHHHhcCCCCCeEeecccccC--C-------H-----HHHHHHHHHHh-hchhcC----CeEEEEE
Confidence 122357788877776665 4444555432211 1 1 78887655442 222333 3589999
Q ss_pred eccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc--
Q psy1686 182 DEVHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-- 258 (448)
Q Consensus 182 DEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra-- 258 (448)
||+|+|+.++++.|++.+|+++.. +||++|++ +.++++++.|||.+++|+|++.+++.+.+..++
T Consensus 134 dea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~------------~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~ 201 (397)
T PRK14955 134 DEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTE------------LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEA 201 (397)
T ss_pred eChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCC------------hHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998766 77777765 678999999999999999999999998888654
Q ss_pred ----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhh-hCCCcccHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhcc
Q psy1686 259 ----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRR-RKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMFDSTV 333 (448)
Q Consensus 259 ----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~-~~~~~It~e~V~~~~~lf~D~~~s~~~L~~~~~~~l~~~~~ 333 (448)
++++++++|++.+ +||+|.|++.|+.+..++.. ..+..|+.++|.+++... +.....+.++. +.
T Consensus 202 ~g~~i~~~al~~l~~~s-~g~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v~~~-~~~~vf~l~~a---------i~ 270 (397)
T PRK14955 202 EGISVDADALQLIGRKA-QGSMRDAQSILDQVIAFSVESEGEGSIRYDKVAELLNYI-DDEHFFAVTDA---------VA 270 (397)
T ss_pred cCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhccccCCCCccCHHHHHHHHCCC-CHHHHHHHHHH---------HH
Confidence 9999999999999 99999999999988777531 234589999998877432 11222211110 00
Q ss_pred cCCCCCcccc-cccccccCchhhHHHHHHHHhcchhhHHHhhhccccccccccCCCCCCChHHHHHHHHHHHHHHH
Q psy1686 334 TGGAGDTKME-VDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWRE 408 (448)
Q Consensus 334 ~~~~~~~~lE-~e~~v~lp~g~v~k~ke~v~~vTLhdlD~~na~~~g~~~l~~~~~~EI~~e~R~~i~~~v~~~i~ 408 (448)
.++..+ ++. ...+....+.. .+++.-++.|-+|+...+......+ ...++.+.+.+.+.+++|=.
T Consensus 271 ~~~~~~-al~~~~~l~~~~~~~----~~iL~ll~~~~R~ll~~k~~~~~~~-----~~~~~~~~~~~~~~a~~~s~ 336 (397)
T PRK14955 271 DGDAVA-MLDVAQFVIRNGYDE----QDFLEKLIEHLRNFLVVHNLRSTRL-----VERPDAVRERYERDAAKFSP 336 (397)
T ss_pred cCCHHH-HHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHHHHhcccccc-----ccCCHHHHHHHHHHHHhCCH
Confidence 000000 000 01111111111 2467778888888887765321111 13355566677777777754
No 42
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.93 E-value=1.3e-25 Score=247.95 Aligned_cols=218 Identities=19% Similarity=0.233 Sum_probs=170.8
Q ss_pred CccCCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCcc
Q psy1686 24 HIRGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLA 102 (448)
Q Consensus 24 Hi~glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~ 102 (448)
+-+-.||++++||++ ++++|||+|+.+..+.|+++++++++++ +.++|||..|||| +++.... .+
T Consensus 12 ~~~~~PLaek~RP~t-ldd~vGQe~ii~~~~~L~~~i~~~~~~s--lLL~GPpGtGKTTLA~aIA~~-------~~---- 77 (725)
T PRK13341 12 SQSEAPLADRLRPRT-LEEFVGQDHILGEGRLLRRAIKADRVGS--LILYGPPGVGKTTLARIIANH-------TR---- 77 (725)
T ss_pred ccccCChHHhcCCCc-HHHhcCcHHHhhhhHHHHHHHhcCCCce--EEEECCCCCCHHHHHHHHHHH-------hc----
Confidence 335679999999999 7999999999998899999999999988 8899999558876 6644221 11
Q ss_pred CCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEe
Q psy1686 103 DVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFID 182 (448)
Q Consensus 103 ~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfID 182 (448)
..|+. +++...+. +++|+.+..+.......+ .+++||||
T Consensus 78 --~~f~~------------------------------lna~~~~i-----~dir~~i~~a~~~l~~~~----~~~IL~ID 116 (725)
T PRK13341 78 --AHFSS------------------------------LNAVLAGV-----KDLRAEVDRAKERLERHG----KRTILFID 116 (725)
T ss_pred --Cccee------------------------------ehhhhhhh-----HHHHHHHHHHHHHhhhcC----CceEEEEe
Confidence 13332 22333343 577777766533222223 25899999
Q ss_pred ccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc----
Q psy1686 183 EVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL---- 258 (448)
Q Consensus 183 EVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra---- 258 (448)
|||+|++.+|++|++.+|+ +.+++|++||+||++.++++++|||.+|+|+|++.+++..+++..+
T Consensus 117 EIh~Ln~~qQdaLL~~lE~-----------g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~ 185 (725)
T PRK13341 117 EVHRFNKAQQDALLPWVEN-----------GTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKE 185 (725)
T ss_pred ChhhCCHHHHHHHHHHhcC-----------ceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999984 6678999999999999999999999999999999999999887421
Q ss_pred ---------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhC--CCcccHHHHHHHHH
Q psy1686 259 ---------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRK--ATEICMEDIRKVYA 308 (448)
Q Consensus 259 ---------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~--~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ .||+|.++++|+.+...+...+ ...||.+.+++++.
T Consensus 186 ~~~g~~~v~I~deaL~~La~~s-~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~ 245 (725)
T PRK13341 186 RGYGDRKVDLEPEAEKHLVDVA-NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQ 245 (725)
T ss_pred hhcCCcccCCCHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHH
Confidence 8999999999999 9999999999999875432111 22388888887664
No 43
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.93 E-value=2.3e-25 Score=232.05 Aligned_cols=208 Identities=21% Similarity=0.299 Sum_probs=168.0
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCc
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKD 107 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~f 107 (448)
||++++||++ ++++|||+|+.+..+.|++++++++.++ +.++||+..|||| +++.... .. ..|
T Consensus 1 pla~~~RP~~-l~d~vGq~~~v~~~~~L~~~i~~~~~~~--ilL~GppGtGKTtLA~~ia~~-------~~------~~~ 64 (413)
T PRK13342 1 PLAERMRPKT-LDEVVGQEHLLGPGKPLRRMIEAGRLSS--MILWGPPGTGKTTLARIIAGA-------TD------APF 64 (413)
T ss_pred ChhhhhCCCC-HHHhcCcHHHhCcchHHHHHHHcCCCce--EEEECCCCCCHHHHHHHHHHH-------hC------CCE
Confidence 7899999998 7999999999999999999999999887 8899999558876 6544221 11 134
Q ss_pred cccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCC
Q psy1686 108 LRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHML 187 (448)
Q Consensus 108 v~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L 187 (448)
+. +++...+. +++|+.++.+.... ..| .++|+||||||+|
T Consensus 65 ~~------------------------------l~a~~~~~-----~~ir~ii~~~~~~~-~~g----~~~vL~IDEi~~l 104 (413)
T PRK13342 65 EA------------------------------LSAVTSGV-----KDLREVIEEARQRR-SAG----RRTILFIDEIHRF 104 (413)
T ss_pred EE------------------------------EecccccH-----HHHHHHHHHHHHhh-hcC----CceEEEEechhhh
Confidence 33 22222233 67888777654322 233 2589999999999
Q ss_pred CHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHh---------c
Q psy1686 188 DIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIR---------L 258 (448)
Q Consensus 188 ~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~R---------a 258 (448)
+..++++|++.+|+ +.+++|++||+||.+.++++++|||.++.|+|++.+++..+|+.. .
T Consensus 105 ~~~~q~~LL~~le~-----------~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~ 173 (413)
T PRK13342 105 NKAQQDALLPHVED-----------GTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVE 173 (413)
T ss_pred CHHHHHHHHHHhhc-----------CcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCC
Confidence 99999999999994 567889999999999999999999999999999999999988752 2
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
+++++++.|++.+ +||+|.++++|+.+... ...|+.++++++++.
T Consensus 174 i~~~al~~l~~~s-~Gd~R~aln~Le~~~~~-----~~~It~~~v~~~~~~ 218 (413)
T PRK13342 174 LDDEALDALARLA-NGDARRALNLLELAALG-----VDSITLELLEEALQK 218 (413)
T ss_pred CCHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-----cCCCCHHHHHHHHhh
Confidence 8899999999999 99999999999988643 346999999888763
No 44
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.92 E-value=2.4e-24 Score=229.80 Aligned_cols=226 Identities=20% Similarity=0.274 Sum_probs=174.7
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCc
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKD 107 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~f 107 (448)
.|++++||++ |+++|||+|+. ..|.+++++++++|. ..|+||+..|||| +++. |+.+.| .++
T Consensus 3 ~l~~KyRP~~-~~dvvGq~~v~---~~L~~~i~~~~l~ha-~Lf~GppGtGKTTlA~~l-------A~~l~c-~~~---- 65 (504)
T PRK14963 3 ALYQRARPIT-FDEVVGQEHVK---EVLLAALRQGRLGHA-YLFSGPRGVGKTTTARLI-------AMAVNC-SGE---- 65 (504)
T ss_pred hHHHhhCCCC-HHHhcChHHHH---HHHHHHHHcCCCCeE-EEEECCCCCCHHHHHHHH-------HHHHhc-cCC----
Confidence 4678999999 89999999995 568999999999982 2789999558876 6654 333443 111
Q ss_pred cccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccC
Q psy1686 108 LRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVH 185 (448)
Q Consensus 108 v~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH 185 (448)
.+.|||+|..|+.+.. +.+++++|...++ |+ +++|+.+..+ ......+ .++|+||||+|
T Consensus 66 ~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~--~v------------d~iR~l~~~~-~~~p~~~----~~kVVIIDEad 126 (504)
T PRK14963 66 DPKPCGECESCLAVRRGAHPDVLEIDAASNN--SV------------EDVRDLREKV-LLAPLRG----GRKVYILDEAH 126 (504)
T ss_pred CCCCCCcChhhHHHhcCCCCceEEecccccC--CH------------HHHHHHHHHH-hhccccC----CCeEEEEECcc
Confidence 1347777777777653 6677788765322 22 7788754433 2222223 36899999999
Q ss_pred CCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------
Q psy1686 186 MLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------ 258 (448)
Q Consensus 186 ~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------ 258 (448)
+++.+++++|++.+|+++.+ +||++|+. +.+++++++|||.+|+|+|++.+++.+.|+.++
T Consensus 127 ~ls~~a~naLLk~LEep~~~t~~Il~t~~------------~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~ 194 (504)
T PRK14963 127 MMSKSAFNALLKTLEEPPEHVIFILATTE------------PEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE 194 (504)
T ss_pred ccCHHHHHHHHHHHHhCCCCEEEEEEcCC------------hhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999998765 77777766 678999999999999999999999999988655
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|+|+|+|+.+..+ +..||.++|.++++
T Consensus 195 i~~~Al~~ia~~s-~GdlR~aln~Lekl~~~-----~~~It~~~V~~~l~ 238 (504)
T PRK14963 195 AEPEALQLVARLA-DGAMRDAESLLERLLAL-----GTPVTRKQVEEALG 238 (504)
T ss_pred CCHHHHHHHHHHc-CCCHHHHHHHHHHHHhc-----CCCCCHHHHHHHHC
Confidence 8999999999999 99999999999987432 23699999988753
No 45
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.91 E-value=6.1e-24 Score=230.52 Aligned_cols=230 Identities=20% Similarity=0.232 Sum_probs=174.7
Q ss_pred CCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCcc
Q psy1686 30 LDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDL 108 (448)
Q Consensus 30 L~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv 108 (448)
|.+++||++ |+++|||+++.+. |.+++.+|+++| ..+|+||+..|||+ +++. |+.+.|.. ......
T Consensus 6 l~~kyRP~~-~~eiiGq~~~~~~---L~~~i~~~~i~~-a~Lf~Gp~G~GKTtlA~~l-------A~~l~c~~-~~~~~~ 72 (585)
T PRK14950 6 LYRKWRSQT-FAELVGQEHVVQT---LRNAIAEGRVAH-AYLFTGPRGVGKTSTARIL-------AKAVNCTT-NDPKGR 72 (585)
T ss_pred HHHHhCCCC-HHHhcCCHHHHHH---HHHHHHhCCCce-EEEEECCCCCCHHHHHHHH-------HHHhcCCC-CCCCCC
Confidence 567899999 8999999999754 899999999987 22689998558875 6644 33333311 112345
Q ss_pred ccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCC
Q psy1686 109 RCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLD 188 (448)
Q Consensus 109 ~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~ 188 (448)
+|..|+.|+.-...++.+++++|..... +. +++|+.++.. ......+ .++|+||||+|+|+
T Consensus 73 ~c~~c~~c~~i~~~~~~d~~~i~~~~~~---------~v-----d~ir~ii~~~-~~~p~~~----~~kVvIIDEa~~L~ 133 (585)
T PRK14950 73 PCGTCEMCRAIAEGSAVDVIEMDAASHT---------SV-----DDAREIIERV-QFRPALA----RYKVYIIDEVHMLS 133 (585)
T ss_pred CCccCHHHHHHhcCCCCeEEEEeccccC---------CH-----HHHHHHHHHH-hhCcccC----CeEEEEEeChHhCC
Confidence 5655555555555556778888754221 22 7888766543 2222223 36999999999999
Q ss_pred HHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------CCH
Q psy1686 189 IECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQT 261 (448)
Q Consensus 189 ~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i~d 261 (448)
.++++.|+|++|+++.. +||++++. .+++++++.|||+++.|++++..++..+|..++ +++
T Consensus 134 ~~a~naLLk~LEepp~~tv~Il~t~~------------~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~ 201 (585)
T PRK14950 134 TAAFNALLKTLEEPPPHAIFILATTE------------VHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEP 201 (585)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEeCC------------hhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999998765 77777765 677889999999999999999999998888654 999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 262 DGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 262 eal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+++.+|++.+ +||+|.|++.|+....+ ++..|+.++|++++.
T Consensus 202 eal~~La~~s-~Gdlr~al~~LekL~~y----~~~~It~e~V~~ll~ 243 (585)
T PRK14950 202 GALEAIARAA-TGSMRDAENLLQQLATT----YGGEISLSQVQSLLG 243 (585)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHhc
Confidence 9999999999 99999999999987554 234799999998765
No 46
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.90 E-value=2.1e-23 Score=220.00 Aligned_cols=229 Identities=20% Similarity=0.206 Sum_probs=169.3
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCc
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKD 107 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~f 107 (448)
.|++++||++ |+++|||+++.+ .|.++++.|++++ ..+++|||..|||+ |++.+. .+.|.. .....
T Consensus 6 ~~~~kyRP~~-~~diiGq~~~v~---~L~~~i~~~~i~h-a~Lf~Gp~G~GKtt~A~~lAk-------~l~c~~-~~~~~ 72 (451)
T PRK06305 6 VSSRKYRPQT-FSEILGQDAVVA---VLKNALRFNRAAH-AYLFSGIRGTGKTTLARIFAK-------ALNCQN-PTEDQ 72 (451)
T ss_pred HHHHHhCCCC-HHHhcCcHHHHH---HHHHHHHcCCCce-EEEEEcCCCCCHHHHHHHHHH-------HhcCCC-cccCC
Confidence 5678999998 899999999975 5999999999986 24689999558875 554422 222200 00112
Q ss_pred cccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccC
Q psy1686 108 LRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVH 185 (448)
Q Consensus 108 v~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH 185 (448)
. |||.|..|+++.. +.+++++|....+ |+ +++|+... .+......+ .++|+||||+|
T Consensus 73 ~--~c~~c~~C~~i~~~~~~d~~~i~g~~~~--gi------------d~ir~i~~-~l~~~~~~~----~~kvvIIdead 131 (451)
T PRK06305 73 E--PCNQCASCKEISSGTSLDVLEIDGASHR--GI------------EDIRQINE-TVLFTPSKS----RYKIYIIDEVH 131 (451)
T ss_pred C--CCcccHHHHHHhcCCCCceEEeeccccC--CH------------HHHHHHHH-HHHhhhhcC----CCEEEEEecHH
Confidence 2 4555555555543 4556666543221 22 78886443 322222223 36899999999
Q ss_pred CCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------
Q psy1686 186 MLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------ 258 (448)
Q Consensus 186 ~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------ 258 (448)
+|+.++++.|+|.+|+++.. +||++|+. +.++.+++.|||.+++|++++.+++.+.|...+
T Consensus 132 ~lt~~~~n~LLk~lEep~~~~~~Il~t~~------------~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~ 199 (451)
T PRK06305 132 MLTKEAFNSLLKTLEEPPQHVKFFLATTE------------IHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE 199 (451)
T ss_pred hhCHHHHHHHHHHhhcCCCCceEEEEeCC------------hHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999998766 67777766 678999999999999999999999998887543
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|.|+++|+.+..+. + ..|+.++|.++++
T Consensus 200 i~~~al~~L~~~s-~gdlr~a~~~Lekl~~~~---~-~~It~~~V~~l~~ 244 (451)
T PRK06305 200 TSREALLPIARAA-QGSLRDAESLYDYVVGLF---P-KSLDPDSVAKALG 244 (451)
T ss_pred CCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc---c-CCcCHHHHHHHHC
Confidence 9999999999999 999999999999876542 2 3599999988764
No 47
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.90 E-value=2.9e-23 Score=204.47 Aligned_cols=217 Identities=20% Similarity=0.228 Sum_probs=166.1
Q ss_pred CCCCCCccccccccccchhhhhhhHHHHHHHhcCC--CCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 30 LDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEV--VMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 30 L~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~k--i~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.+..+||++ +++||||+++++-..+..++-+... +-| +.++|||.-|||| |.|.++. ++. +.+
T Consensus 16 ~e~~lRP~~-l~efiGQ~~vk~~L~ifI~AAk~r~e~lDH--vLl~GPPGlGKTTLA~IIA~E-------mgv----n~k 81 (332)
T COG2255 16 IERSLRPKT-LDEFIGQEKVKEQLQIFIKAAKKRGEALDH--VLLFGPPGLGKTTLAHIIANE-------LGV----NLK 81 (332)
T ss_pred hhcccCccc-HHHhcChHHHHHHHHHHHHHHHhcCCCcCe--EEeeCCCCCcHHHHHHHHHHH-------hcC----CeE
Confidence 456799999 8999999999998888877765444 347 8899999339988 8877442 221 112
Q ss_pred ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 107 DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
..+ |.+. .++.++-+++++ +++| +|||||||||
T Consensus 82 ~ts---Gp~l------------------eK~gDlaaiLt~--------------------Le~~------DVLFIDEIHr 114 (332)
T COG2255 82 ITS---GPAL------------------EKPGDLAAILTN--------------------LEEG------DVLFIDEIHR 114 (332)
T ss_pred ecc---cccc------------------cChhhHHHHHhc--------------------CCcC------CeEEEehhhh
Confidence 222 1110 011112222222 3444 8999999999
Q ss_pred CCHHHHHHHHHhhhhcCCCeEEEEecC---------ceeEeeccccCCCCCCChhhhhhcc-cccCCCCCHHHHHHHHHH
Q psy1686 187 LDIECFSFLNRALESEMSPVVITATNR---------GVTKIRGTAYSSPHGIPIDLLDRMV-IIPTQPYQDEEIQAILKI 256 (448)
Q Consensus 187 L~~~~f~~Llk~lEe~~~pi~IlaT~~---------~i~lI~~Ttenp~~~Ip~~lLSR~~-ii~~~pys~~eI~~IL~~ 256 (448)
|++.....|+.++||+...++|..-.. -+++|||||- .-.++.+|.+|+. +.+++-|+.+||.+|+++
T Consensus 115 l~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr--~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r 192 (332)
T COG2255 115 LSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTR--AGMLTNPLRDRFGIIQRLEFYTVEELEEIVKR 192 (332)
T ss_pred cChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccc--cccccchhHHhcCCeeeeecCCHHHHHHHHHH
Confidence 999999999999999987777632211 1388999985 4568899999996 889999999999999995
Q ss_pred hc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 257 RL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 257 Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
-+ +++++...||+.| +|.+|.|..||.+..++|.-.+...|+.+.+.+++.++
T Consensus 193 ~a~~l~i~i~~~~a~eIA~rS-RGTPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 193 SAKILGIEIDEEAALEIARRS-RGTPRIANRLLRRVRDFAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred HHHHhCCCCChHHHHHHHHhc-cCCcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHh
Confidence 44 9999999999999 99999999999999999987788899999999999864
No 48
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.90 E-value=2.8e-23 Score=226.39 Aligned_cols=229 Identities=19% Similarity=0.226 Sum_probs=172.1
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCc
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKD 107 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~f 107 (448)
|+.+..||++ |++++||+++. ..|.++++++++++ -.+|+||+..|||+ |++.+ +.+.|.. ...+
T Consensus 5 pl~~kyRP~~-f~~liGq~~i~---~~L~~~l~~~rl~~-a~Lf~Gp~G~GKttlA~~lA-------k~L~c~~--~~~~ 70 (620)
T PRK14948 5 PLHHKYRPQR-FDELVGQEAIA---TTLKNALISNRIAP-AYLFTGPRGTGKTSSARILA-------KSLNCLN--SDKP 70 (620)
T ss_pred hHHHHhCCCc-HhhccChHHHH---HHHHHHHHcCCCCc-eEEEECCCCCChHHHHHHHH-------HHhcCCC--cCCC
Confidence 6778899998 89999999996 45899999999864 36789998558875 66553 3333311 1122
Q ss_pred cccCCCcccceeee--eeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccC
Q psy1686 108 LRCPDGELQKRKTV--VHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVH 185 (448)
Q Consensus 108 v~~p~ge~~k~kei--~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH 185 (448)
..-|||.|.-|+.+ ..+.+++++|.... .|+ +++|+.+..+. .....+ .++|+||||+|
T Consensus 71 ~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~--~~v------------d~IReii~~a~-~~p~~~----~~KViIIDEad 131 (620)
T PRK14948 71 TPEPCGKCELCRAIAAGNALDVIEIDAASN--TGV------------DNIRELIERAQ-FAPVQA----RWKVYVIDECH 131 (620)
T ss_pred CCCCCcccHHHHHHhcCCCccEEEEecccc--CCH------------HHHHHHHHHHh-hChhcC----CceEEEEECcc
Confidence 22345554444444 45667788865421 122 88998886652 222233 35899999999
Q ss_pred CCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------
Q psy1686 186 MLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------ 258 (448)
Q Consensus 186 ~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------ 258 (448)
+|+.+++++|+|++|+++.. +||++|+. +.++.++|+|||+++.|++++.+++...|...+
T Consensus 132 ~Lt~~a~naLLK~LEePp~~tvfIL~t~~------------~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~ 199 (620)
T PRK14948 132 MLSTAAFNALLKTLEEPPPRVVFVLATTD------------PQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE 199 (620)
T ss_pred ccCHHHHHHHHHHHhcCCcCeEEEEEeCC------------hhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 99999999999999998877 67888876 667889999999999999999999988777533
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++.+|++.+ +||+|+|+++|+....+. ..||.++|.++.+
T Consensus 200 is~~al~~La~~s-~G~lr~A~~lLeklsL~~-----~~It~e~V~~lvg 243 (620)
T PRK14948 200 IEPEALTLVAQRS-QGGLRDAESLLDQLSLLP-----GPITPEAVWDLLG 243 (620)
T ss_pred CCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcc-----CCCCHHHHHHHhc
Confidence 8899999999999 999999999999875542 2588888887654
No 49
>PLN03025 replication factor C subunit; Provisional
Probab=99.89 E-value=1.1e-22 Score=204.89 Aligned_cols=213 Identities=17% Similarity=0.160 Sum_probs=155.3
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
+|+.++.||++ ++++|||+++.+ .|+++++++++++ +.++|||..|||+ +++.+. +..+ + .
T Consensus 1 ~~w~~kyrP~~-l~~~~g~~~~~~---~L~~~~~~~~~~~--lll~Gp~G~GKTtla~~la~-------~l~~---~--~ 62 (319)
T PLN03025 1 LPWVEKYRPTK-LDDIVGNEDAVS---RLQVIARDGNMPN--LILSGPPGTGKTTSILALAH-------ELLG---P--N 62 (319)
T ss_pred CChhhhcCCCC-HHHhcCcHHHHH---HHHHHHhcCCCce--EEEECCCCCCHHHHHHHHHH-------HHhc---c--c
Confidence 57889999999 799999999875 4888999998877 8899999558875 553322 1111 1 1
Q ss_pred ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 107 DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
|. ....|++....+ |. +.+|+.|........... .-.++|+||||+|+
T Consensus 63 ~~----------------~~~~eln~sd~~---------~~-----~~vr~~i~~~~~~~~~~~--~~~~kviiiDE~d~ 110 (319)
T PLN03025 63 YK----------------EAVLELNASDDR---------GI-----DVVRNKIKMFAQKKVTLP--PGRHKIVILDEADS 110 (319)
T ss_pred Cc----------------cceeeecccccc---------cH-----HHHHHHHHHHHhccccCC--CCCeEEEEEechhh
Confidence 10 011223222221 22 567766654322111000 01358999999999
Q ss_pred CCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------C
Q psy1686 187 LDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------M 259 (448)
Q Consensus 187 L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i 259 (448)
++..+|++|++.+|+++.. .||+++|. +.+++++|+|||.+++|+|++.+++.+.|+..| +
T Consensus 111 lt~~aq~aL~~~lE~~~~~t~~il~~n~------------~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i 178 (319)
T PLN03025 111 MTSGAQQALRRTMEIYSNTTRFALACNT------------SSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPY 178 (319)
T ss_pred cCHHHHHHHHHHHhcccCCceEEEEeCC------------ccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999987654 57777775 667889999999999999999999999998666 9
Q ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 260 QTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 260 ~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+++++++|++.+ +||+|.|+|.|+.+. . +...||.++|.++.+
T Consensus 179 ~~~~l~~i~~~~-~gDlR~aln~Lq~~~--~---~~~~i~~~~v~~~~~ 221 (319)
T PLN03025 179 VPEGLEAIIFTA-DGDMRQALNNLQATH--S---GFGFVNQENVFKVCD 221 (319)
T ss_pred CHHHHHHHHHHc-CCCHHHHHHHHHHHH--h---cCCCCCHHHHHHHcC
Confidence 999999999999 999999999999543 1 234699988887653
No 50
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.88 E-value=1.3e-21 Score=197.54 Aligned_cols=308 Identities=20% Similarity=0.248 Sum_probs=202.5
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCc
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKD 107 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~f 107 (448)
|++++.||++ ++++|||+++.+ .|.+++++|++++. ..++|||..|||+ ++..+ +.+.|. ....+
T Consensus 3 ~~~~~~rp~~-~~~iig~~~~~~---~l~~~~~~~~~~~~-~Ll~G~~G~GKt~~a~~la-------~~l~~~--~~~~~ 68 (355)
T TIGR02397 3 VLARKYRPQT-FEDVIGQEHIVQ---TLKNAIKNGRIAHA-YLFSGPRGTGKTSIARIFA-------KALNCQ--NGPDG 68 (355)
T ss_pred cHHHHhCCCc-HhhccCcHHHHH---HHHHHHHcCCCCeE-EEEECCCCCCHHHHHHHHH-------HHhcCC--CCCCC
Confidence 6788999998 899999999975 48899999999873 3689999558875 54332 222220 11123
Q ss_pred cccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccC
Q psy1686 108 LRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVH 185 (448)
Q Consensus 108 v~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH 185 (448)
. |+|+|..|+.+.. +..++++|..... + .+++|+.++.+. .....+ .++|++|||+|
T Consensus 69 ~--~c~~c~~c~~~~~~~~~~~~~~~~~~~~---------~-----~~~~~~l~~~~~-~~p~~~----~~~vviidea~ 127 (355)
T TIGR02397 69 E--PCNECESCKEINSGSSLDVIEIDAASNN---------G-----VDDIREILDNVK-YAPSSG----KYKVYIIDEVH 127 (355)
T ss_pred C--CCCCCHHHHHHhcCCCCCEEEeeccccC---------C-----HHHHHHHHHHHh-cCcccC----CceEEEEeChh
Confidence 3 5676666655443 3455555443110 1 156777776542 222223 35899999999
Q ss_pred CCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------
Q psy1686 186 MLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------ 258 (448)
Q Consensus 186 ~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------ 258 (448)
+++..+++.|++.+|+++.+ +||++|+. +.++++++.|||.++.|+|++.+++.++|..++
T Consensus 128 ~l~~~~~~~Ll~~le~~~~~~~lIl~~~~------------~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~ 195 (355)
T TIGR02397 128 MLSKSAFNALLKTLEEPPEHVVFILATTE------------PHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK 195 (355)
T ss_pred hcCHHHHHHHHHHHhCCccceeEEEEeCC------------HHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999998776 56666665 667889999999999999999999999998655
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhcccCCCC
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMFDSTVTGGAG 338 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~D~~~s~~~L~~~~~~~l~~~~~~~~~~ 338 (448)
++++++++|++.+ +||+|.|++.|+.+..++ .+.||.++|+++.....+ ....++++ .+..++..
T Consensus 196 i~~~a~~~l~~~~-~g~~~~a~~~lekl~~~~----~~~it~~~v~~~~~~~~~-~~i~~l~~---------ai~~~~~~ 260 (355)
T TIGR02397 196 IEDEALELIARAA-DGSLRDALSLLDQLISFG----NGNITYEDVNELLGLVDD-EKLIELLE---------AILNKDTA 260 (355)
T ss_pred CCHHHHHHHHHHc-CCChHHHHHHHHHHHhhc----CCCCCHHHHHHHhCCCCH-HHHHHHHH---------HHHcCCHH
Confidence 9999999999999 999999999999887654 235999999988753211 11111111 11111110
Q ss_pred CcccccccccccCchhhHHHHHHHHhcchhhHHHhhhccccccccccCCCCCCChHHHHHHHHHHHHHHH
Q psy1686 339 DTKMEVDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWRE 408 (448)
Q Consensus 339 ~~~lE~e~~v~lp~g~v~k~ke~v~~vTLhdlD~~na~~~g~~~l~~~~~~EI~~e~R~~i~~~v~~~i~ 408 (448)
++.--...+.+-.. ....++..+..+-+|+.-.+..|. ...-|++..++.+-+.+.+|=.
T Consensus 261 ~a~~~~~~l~~~~~----~~~~il~~l~~~~r~l~~~k~~~~------~~~~i~~~~~~~l~~~a~~~s~ 320 (355)
T TIGR02397 261 EALKILDEILESGV----DPEKFLEDLIEILRDLLLIKKTPS------NLLAVLESEQEFLKELALKLSL 320 (355)
T ss_pred HHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHhhcCc------cccccCHHHHHHHHHHHHhCCH
Confidence 00000011111111 133466777777777766653320 1112677777777777777744
No 51
>KOG0989|consensus
Probab=99.87 E-value=2.9e-21 Score=191.93 Aligned_cols=204 Identities=20% Similarity=0.227 Sum_probs=149.7
Q ss_pred CCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCcc
Q psy1686 30 LDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDL 108 (448)
Q Consensus 30 L~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv 108 (448)
.-+..||++ +++++||+++.. +|.+.+..+-.++ +.|+|||.+|||+ +++. |++..+ . .
T Consensus 26 wteKYrPkt-~de~~gQe~vV~---~L~~a~~~~~lp~--~LFyGPpGTGKTStalaf-------ar~L~~-----~--~ 85 (346)
T KOG0989|consen 26 WTEKYRPKT-FDELAGQEHVVQ---VLKNALLRRILPH--YLFYGPPGTGKTSTALAF-------ARALNC-----E--Q 85 (346)
T ss_pred hHHHhCCCc-HHhhcchHHHHH---HHHHHHhhcCCce--EEeeCCCCCcHhHHHHHH-------HHHhcC-----c--c
Confidence 568899999 799999999974 5899988844445 8999999657763 4444 444442 1 2
Q ss_pred ccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHH-----hCcccccCeEEEEec
Q psy1686 109 RCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWRE-----EGKAEIVPGVLFIDE 183 (448)
Q Consensus 109 ~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~-----~g~~~i~~~VLfIDE 183 (448)
..|+|-|.- |+ ++...| .=+|+.+...- +... .|..--.++|+++||
T Consensus 86 ~~~~rvl~l----------------na----------SderGi-svvr~Kik~fa-kl~~~~~~~~~~~~~~fKiiIlDE 137 (346)
T KOG0989|consen 86 LFPCRVLEL----------------NA----------SDERGI-SVVREKIKNFA-KLTVLLKRSDGYPCPPFKIIILDE 137 (346)
T ss_pred ccccchhhh----------------cc----------cccccc-cchhhhhcCHH-HHhhccccccCCCCCcceEEEEec
Confidence 344444332 11 111111 23444443321 1111 111111239999999
Q ss_pred cCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc----
Q psy1686 184 VHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL---- 258 (448)
Q Consensus 184 VH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra---- 258 (448)
.|.++.+||++|.|++|+++-. .||+-+|. .-.||.++.|||.=|+|+|+..+++.+.|+.-|
T Consensus 138 cdsmtsdaq~aLrr~mE~~s~~trFiLIcny------------lsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~ 205 (346)
T KOG0989|consen 138 CDSMTSDAQAALRRTMEDFSRTTRFILICNY------------LSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEG 205 (346)
T ss_pred hhhhhHHHHHHHHHHHhccccceEEEEEcCC------------hhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhC
Confidence 9999999999999999997765 89999998 777999999999999999999999999998777
Q ss_pred --CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCccc
Q psy1686 259 --MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEIC 299 (448)
Q Consensus 259 --i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It 299 (448)
||++|+++|+++| +||+|+|+.+|+.++. .+++||
T Consensus 206 v~~d~~al~~I~~~S-~GdLR~Ait~Lqsls~-----~gk~It 242 (346)
T KOG0989|consen 206 VDIDDDALKLIAKIS-DGDLRRAITTLQSLSL-----LGKRIT 242 (346)
T ss_pred CCCCHHHHHHHHHHc-CCcHHHHHHHHHHhhc-----cCcccc
Confidence 9999999999999 9999999999998865 344566
No 52
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.86 E-value=1.6e-20 Score=192.15 Aligned_cols=306 Identities=17% Similarity=0.234 Sum_probs=197.4
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.++++++||++ ++++|||+.+.+ .+.+.+++|++++ ...++|||..|||+ ++..+.. ..+ .
T Consensus 5 ~~~~~k~rP~~-~~~iig~~~~~~---~l~~~i~~~~~~~-~~L~~G~~G~GKt~~a~~la~~-------l~~------~ 66 (367)
T PRK14970 5 VVSARKYRPQT-FDDVVGQSHITN---TLLNAIENNHLAQ-ALLFCGPRGVGKTTCARILARK-------INQ------P 66 (367)
T ss_pred HHHHHHHCCCc-HHhcCCcHHHHH---HHHHHHHcCCCCe-EEEEECCCCCCHHHHHHHHHHH-------hcC------C
Confidence 45788999999 899999999975 5899999999875 35689999558875 4433221 111 0
Q ss_pred ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 107 DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
..+-+ ++ ...+++.|+|..+++ ++ +++|+.+..+. .....+ .+.|+||||+|.
T Consensus 67 ~~~~~-~~-------~~~~~~~~l~~~~~~--~~------------~~i~~l~~~~~-~~p~~~----~~kiviIDE~~~ 119 (367)
T PRK14970 67 GYDDP-NE-------DFSFNIFELDAASNN--SV------------DDIRNLIDQVR-IPPQTG----KYKIYIIDEVHM 119 (367)
T ss_pred CCCCC-CC-------CCCcceEEeccccCC--CH------------HHHHHHHHHHh-hccccC----CcEEEEEeChhh
Confidence 00000 00 012333344443322 11 67777666542 111223 358999999999
Q ss_pred CCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------C
Q psy1686 187 LDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------M 259 (448)
Q Consensus 187 L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i 259 (448)
++..+++.|++.+|+++.+ +||++++. +.++.+++.|||.++.|+|++.+++..+|...+ +
T Consensus 120 l~~~~~~~ll~~le~~~~~~~~Il~~~~------------~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i 187 (367)
T PRK14970 120 LSSAAFNAFLKTLEEPPAHAIFILATTE------------KHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKF 187 (367)
T ss_pred cCHHHHHHHHHHHhCCCCceEEEEEeCC------------cccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999997765 66777665 678899999999999999999999998888644 8
Q ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhcccCCCCC
Q psy1686 260 QTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMFDSTVTGGAGD 339 (448)
Q Consensus 260 ~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~D~~~s~~~L~~~~~~~l~~~~~~~~~~~ 339 (448)
+++++++|++.+ +||+|.|++.|+....++. . .||.++|+.+.... ......++++ .+..++...
T Consensus 188 ~~~al~~l~~~~-~gdlr~~~~~lekl~~y~~---~-~it~~~v~~~~~~~-~~~~if~l~~---------ai~~~~~~~ 252 (367)
T PRK14970 188 EDDALHIIAQKA-DGALRDALSIFDRVVTFCG---K-NITRQAVTENLNIL-DYDTYINVTD---------LILENKIPE 252 (367)
T ss_pred CHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcC---C-CCCHHHHHHHhCCC-CHHHHHHHHH---------HHHcCCHHH
Confidence 999999999999 9999999999999877652 2 39999999887532 1111111111 000011000
Q ss_pred cccccccccccCchhhHHHHHHHHhcchhhHHHhhhccccccccccCCCCCCChHHHHHHHHHHHHHHHhcccee
Q psy1686 340 TKMEVDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGHSEK 414 (448)
Q Consensus 340 ~~lE~e~~v~lp~g~v~k~ke~v~~vTLhdlD~~na~~~g~~~l~~~~~~EI~~e~R~~i~~~v~~~i~~g~ael 414 (448)
.--....+...-+ ..-+++..+..|-+|++..+..+..+ .-.+++..++.+.+.+++|=.+....+
T Consensus 253 a~~~~~~l~~~~~----~~~~il~~l~~~fr~ll~~k~~~~~~-----~l~~~~~~~~~~~~~a~~~s~~~L~~~ 318 (367)
T PRK14970 253 LLLAFNEILRKGF----DGHHFIAGLASHFRDLMVSKTPATIA-----LLEVGEQAKKRYEVQSQKVSQSFLLSG 318 (367)
T ss_pred HHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHhhccCccc-----cccCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 0000011111111 11236777888888888886532211 123557778888888888876443333
No 53
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.83 E-value=2.8e-20 Score=193.38 Aligned_cols=199 Identities=16% Similarity=0.155 Sum_probs=147.4
Q ss_pred cccccccchhhhhhhHHHHHHHhcCC---------CCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCcc
Q psy1686 39 VSQGMVGQLQARRAAGVVLGMIKEEV---------VMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDL 108 (448)
Q Consensus 39 ~~~~~VGQ~~~r~a~~~l~~mI~~~k---------i~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv 108 (448)
.|++++||+++.+. |+++|++++ ++| -..|+||+..|||+ |+.. |+.+.| +....
T Consensus 3 ~f~~IiGq~~~~~~---L~~~i~~~~~~~~~~~~~l~h-a~Lf~Gp~G~GKt~lA~~l-------A~~l~c---~~~~~- 67 (394)
T PRK07940 3 VWDDLVGQEAVVAE---LRAAARAARADVAAAGSGMTH-AWLFTGPPGSGRSVAARAF-------AAALQC---TDPDE- 67 (394)
T ss_pred hhhhccChHHHHHH---HHHHHHhccccccccCCCCCe-EEEEECCCCCcHHHHHHHH-------HHHhCC---CCCCC-
Confidence 37899999999755 999999987 654 35689998447765 5533 333333 11122
Q ss_pred ccCCCcccceeeee--eccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 109 RCPDGELQKRKTVV--HTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 109 ~~p~ge~~k~kei~--~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
-|||+|..|+.+. .+.++|.++.-. .. -+. ++||+.+..+. ....+| .++|+||||+|+
T Consensus 68 -~~Cg~C~~C~~~~~~~hpD~~~i~~~~-~~-------i~i-----~~iR~l~~~~~-~~p~~~----~~kViiIDead~ 128 (394)
T PRK07940 68 -PGCGECRACRTVLAGTHPDVRVVAPEG-LS-------IGV-----DEVRELVTIAA-RRPSTG----RWRIVVIEDADR 128 (394)
T ss_pred -CCCCCCHHHHHHhcCCCCCEEEecccc-cc-------CCH-----HHHHHHHHHHH-hCcccC----CcEEEEEechhh
Confidence 3566666555554 466777664321 11 122 78887766543 222233 468999999999
Q ss_pred CCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-CCHHHH
Q psy1686 187 LDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-MQTDGL 264 (448)
Q Consensus 187 L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra-i~deal 264 (448)
++.+++|+|+|++|+|+.+ +||++|+. +..++++++|||++++|+|++.+++.+.|..+. ++++++
T Consensus 129 m~~~aanaLLk~LEep~~~~~fIL~a~~------------~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~~~~~a 196 (394)
T PRK07940 129 LTERAANALLKAVEEPPPRTVWLLCAPS------------PEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGVDPETA 196 (394)
T ss_pred cCHHHHHHHHHHhhcCCCCCeEEEEECC------------hHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCCCHHHH
Confidence 9999999999999998876 67777776 788999999999999999999999999997443 999999
Q ss_pred HHHHHHcCCCCHHHHHHHHH
Q psy1686 265 RVLTKIALDTSLRYAIQLIT 284 (448)
Q Consensus 265 ~~La~~a~~Gd~R~AL~lLe 284 (448)
..+++.| +|+++.|+.+++
T Consensus 197 ~~la~~s-~G~~~~A~~l~~ 215 (394)
T PRK07940 197 RRAARAS-QGHIGRARRLAT 215 (394)
T ss_pred HHHHHHc-CCCHHHHHHHhc
Confidence 9999999 999999998865
No 54
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.82 E-value=1.6e-19 Score=185.22 Aligned_cols=218 Identities=15% Similarity=0.138 Sum_probs=147.3
Q ss_pred CCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCcc-ccccCCCccCCCCcccc
Q psy1686 33 SLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREE-EPDYDGWLADVTKDLRC 110 (448)
Q Consensus 33 ~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~-a~~~d~~~~~~~~fv~~ 110 (448)
...|+. ++.++||+++... |..++++|+++| ...++||+..||++ ++..+..--+. ..... ......
T Consensus 16 ~~~P~~-~~~l~Gh~~a~~~---L~~a~~~grl~h-a~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~------~~~~~~ 84 (351)
T PRK09112 16 VPSPSE-NTRLFGHEEAEAF---LAQAYREGKLHH-ALLFEGPEGIGKATLAFHLANHILSHPDPAEA------PETLAD 84 (351)
T ss_pred CCCCCc-hhhccCcHHHHHH---HHHHHHcCCCCe-eEeeECCCCCCHHHHHHHHHHHHcCCCccccC------ccccCC
Confidence 367998 7999999999754 899999999987 45678988448876 44221111000 00000 011122
Q ss_pred CCCcccceeee--eeccchhhhhhh-ccccccchhhhcCCCCCCc-hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 111 PDGELQKRKTV--VHTVTLHEIDVI-NSRTHGFLALFAGDTGEIT-PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 111 p~ge~~k~kei--~~~vtLheiD~~-nsr~~g~~a~~~~~~~eI~-~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
|+|.|.-|+.+ ..+.+++.+..- +.+ .|- .+.+|+ +++|+.++ .......+| .+.|++|||+|+
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~-~~~------~~~~I~vd~iR~l~~-~l~~~~~~g----~~rVviIDeAd~ 152 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEK-TGK------FKTAITVDEIRRVGH-FLSQTSGDG----NWRIVIIDPADD 152 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccc-ccc------ccccCCHHHHHHHHH-HhhhccccC----CceEEEEEchhh
Confidence 44554444443 334555544311 111 000 012222 66775433 222222234 358999999999
Q ss_pred CCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc----CCH
Q psy1686 187 LDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----MQT 261 (448)
Q Consensus 187 L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----i~d 261 (448)
|+.+++|+|+|++|+|+.. +||+.|+. +..++++++|||+.++|.|++.+++.++|+..+ +++
T Consensus 153 l~~~aanaLLk~LEEpp~~~~fiLit~~------------~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~~~~ 220 (351)
T PRK09112 153 MNRNAANAILKTLEEPPARALFILISHS------------SGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQGSDG 220 (351)
T ss_pred cCHHHHHHHHHHHhcCCCCceEEEEECC------------hhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccCCCH
Confidence 9999999999999998764 77777765 677899999999999999999999999999644 668
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHH
Q psy1686 262 DGLRVLTKIALDTSLRYAIQLITTA 286 (448)
Q Consensus 262 eal~~La~~a~~Gd~R~AL~lLe~a 286 (448)
+++..+++.| +|++|.|+++++..
T Consensus 221 ~~~~~i~~~s-~G~pr~Al~ll~~~ 244 (351)
T PRK09112 221 EITEALLQRS-KGSVRKALLLLNYG 244 (351)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHhcC
Confidence 9999999999 99999999998754
No 55
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.79 E-value=9.9e-19 Score=180.17 Aligned_cols=223 Identities=18% Similarity=0.138 Sum_probs=153.5
Q ss_pred CCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccc-cccCCCccCCCCccccC
Q psy1686 34 LEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEE-PDYDGWLADVTKDLRCP 111 (448)
Q Consensus 34 ~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a-~~~d~~~~~~~~fv~~p 111 (448)
.+|++ ++++|||+++.+ .|.+++.+|+++|- ..|+||+..||++ |...+..=-|.. ..-++-..+......|+
T Consensus 13 ~~P~~-~~~iiGq~~~~~---~L~~~~~~~rl~HA-~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~ 87 (365)
T PRK07471 13 PHPRE-TTALFGHAAAEA---ALLDAYRSGRLHHA-WLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDP 87 (365)
T ss_pred CCCCc-hhhccChHHHHH---HHHHHHHcCCCCce-EEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCC
Confidence 68998 799999999975 48999999999983 3578988448865 432111100000 00000000112233466
Q ss_pred CCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCc-hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHH
Q psy1686 112 DGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEIT-PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIE 190 (448)
Q Consensus 112 ~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~-~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~ 190 (448)
.|..|++-+-..+.++|.+.-......+ ..+.+|+ ++||+.+... .....+-.+.|++|||+|+++.+
T Consensus 88 ~c~~c~~i~~~~HPDl~~i~~~~~~~~~------~~~~~I~VdqiR~l~~~~-----~~~~~~~~~kVviIDead~m~~~ 156 (365)
T PRK07471 88 DHPVARRIAAGAHGGLLTLERSWNEKGK------RLRTVITVDEVRELISFF-----GLTAAEGGWRVVIVDTADEMNAN 156 (365)
T ss_pred CChHHHHHHccCCCCeEEEecccccccc------cccccccHHHHHHHHHHh-----CcCcccCCCEEEEEechHhcCHH
Confidence 6666666666678888877532111000 0012332 7788755433 12222224689999999999999
Q ss_pred HHHHHHHhhhhcCC-CeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc--CCHHHHHHH
Q psy1686 191 CFSFLNRALESEMS-PVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL--MQTDGLRVL 267 (448)
Q Consensus 191 ~f~~Llk~lEe~~~-pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra--i~deal~~L 267 (448)
++|+|+|++|+|+. .+||+.|+. +..++++++|||+.++|.|++.+++.+.|..+. .+++++..+
T Consensus 157 aanaLLK~LEepp~~~~~IL~t~~------------~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~~~~~~~l 224 (365)
T PRK07471 157 AANALLKVLEEPPARSLFLLVSHA------------PARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLPDDPRAAL 224 (365)
T ss_pred HHHHHHHHHhcCCCCeEEEEEECC------------chhchHHhhccceEEECCCCCHHHHHHHHHHhcccCCHHHHHHH
Confidence 99999999999876 478887777 667899999999999999999999999998655 566667888
Q ss_pred HHHcCCCCHHHHHHHHHH
Q psy1686 268 TKIALDTSLRYAIQLITT 285 (448)
Q Consensus 268 a~~a~~Gd~R~AL~lLe~ 285 (448)
++.| +|++|.|+++++.
T Consensus 225 ~~~s-~Gsp~~Al~ll~~ 241 (365)
T PRK07471 225 AALA-EGSVGRALRLAGG 241 (365)
T ss_pred HHHc-CCCHHHHHHHhcc
Confidence 9999 9999999999863
No 56
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.77 E-value=8.2e-18 Score=170.11 Aligned_cols=218 Identities=18% Similarity=0.198 Sum_probs=150.5
Q ss_pred CCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccc
Q psy1686 31 DDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLR 109 (448)
Q Consensus 31 ~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~ 109 (448)
...+||+. +++||||++..+....+....+...-+.+.+.++|||..|||+ ++..++ +++. ...+..
T Consensus 16 ~~~~rP~~-~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~-------~l~~----~~~~~~ 83 (328)
T PRK00080 16 ERSLRPKS-LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIAN-------EMGV----NIRITS 83 (328)
T ss_pred hhhcCcCC-HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHH-------HhCC----CeEEEe
Confidence 46899998 8999999999988665555544332233458899999558876 553322 1111 001111
Q ss_pred cCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCH
Q psy1686 110 CPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDI 189 (448)
Q Consensus 110 ~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~ 189 (448)
|... .. ..++...+. .+ + .++|+||||||+++.
T Consensus 84 ---~~~~----------------------------~~-----~~~l~~~l~----~l---~----~~~vl~IDEi~~l~~ 116 (328)
T PRK00080 84 ---GPAL----------------------------EK-----PGDLAAILT----NL---E----EGDVLFIDEIHRLSP 116 (328)
T ss_pred ---cccc----------------------------cC-----hHHHHHHHH----hc---c----cCCEEEEecHhhcch
Confidence 1000 00 022322221 11 1 248999999999999
Q ss_pred HHHHHHHHhhhhcCCCeEEEE---------ecCceeEeeccccCCCCCCChhhhhhc-ccccCCCCCHHHHHHHHHHhc-
Q psy1686 190 ECFSFLNRALESEMSPVVITA---------TNRGVTKIRGTAYSSPHGIPIDLLDRM-VIIPTQPYQDEEIQAILKIRL- 258 (448)
Q Consensus 190 ~~f~~Llk~lEe~~~pi~Ila---------T~~~i~lI~~Ttenp~~~Ip~~lLSR~-~ii~~~pys~~eI~~IL~~Ra- 258 (448)
..++.|+.++|+....+++-. .-..+++|++|+. +..++++|.||| .+++|.+|+.+++.+||+..+
T Consensus 117 ~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~--~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~ 194 (328)
T PRK00080 117 VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR--AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSAR 194 (328)
T ss_pred HHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCC--cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 999999999997643222200 0012466777664 356889999998 579999999999999999665
Q ss_pred -----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 259 -----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 259 -----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
++++++++|++.+ +|++|.|.++|+++..+|...+...|+.+++++++..+
T Consensus 195 ~~~~~~~~~~~~~ia~~~-~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 195 ILGVEIDEEGALEIARRS-RGTPRIANRLLRRVRDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HcCCCcCHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 9999999999999 99999999999998877754455689999999999754
No 57
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.77 E-value=7.9e-18 Score=170.30 Aligned_cols=208 Identities=18% Similarity=0.152 Sum_probs=140.9
Q ss_pred ccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCcccce
Q psy1686 40 SQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGELQKR 118 (448)
Q Consensus 40 ~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~ 118 (448)
|++++||+++.+ .|.+++++|++++ -..++||+..||++ |... |+..-| + . |+|.|..|
T Consensus 3 f~~iiGq~~~~~---~L~~~i~~~rl~h-a~Lf~G~~G~Gk~~~A~~~-------a~~llc---~--~----~c~~c~~~ 62 (314)
T PRK07399 3 FANLIGQPLAIE---LLTAAIKQNRIAP-AYLFAGPEGVGRKLAALCF-------IEGLLS---Q--G----SPSKNIRR 62 (314)
T ss_pred HHHhCCHHHHHH---HHHHHHHhCCCCc-eEEEECCCCCCHHHHHHHH-------HHHHcC---C--C----CCCCcHhc
Confidence 789999999974 5999999999976 35688998447754 4322 222222 1 1 34444444
Q ss_pred e-eeeeccchhhhhhhcccccc--chhhhc-------CCCCCCc-hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCC
Q psy1686 119 K-TVVHTVTLHEIDVINSRTHG--FLALFA-------GDTGEIT-PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHML 187 (448)
Q Consensus 119 k-ei~~~vtLheiD~~nsr~~g--~~a~~~-------~~~~eI~-~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L 187 (448)
+ .-..+.+||.++-.... +| ++.-+. .....|+ +++|+.+... .....+| .++|++||++|++
T Consensus 63 ~~~~~~hPDl~~i~p~~~~-~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l-~~~p~~~----~~kVvII~~ae~m 136 (314)
T PRK07399 63 RLEEGNHPDLLWVEPTYQH-QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFL-SRPPLEA----PRKVVVIEDAETM 136 (314)
T ss_pred ccccCCCCCEEEEeccccc-cccccchhhhhhccccccccccCcHHHHHHHHHHH-ccCcccC----CceEEEEEchhhc
Confidence 4 12235666655432110 11 111000 1112332 5677644432 2222233 4699999999999
Q ss_pred CHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhcC-C--HHHH
Q psy1686 188 DIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLM-Q--TDGL 264 (448)
Q Consensus 188 ~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Rai-~--deal 264 (448)
+..+.|+|+|++|||+..+||+.|+. +..++++++|||++++|.|++.+++.++|+..+. + +..+
T Consensus 137 ~~~aaNaLLK~LEEPp~~~fILi~~~------------~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~~~~ 204 (314)
T PRK07399 137 NEAAANALLKTLEEPGNGTLILIAPS------------PESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILNINF 204 (314)
T ss_pred CHHHHHHHHHHHhCCCCCeEEEEECC------------hHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccchhHH
Confidence 99999999999999995588888876 6789999999999999999999999999996552 1 2225
Q ss_pred HHHHHHcCCCCHHHHHHHHHHH
Q psy1686 265 RVLTKIALDTSLRYAIQLITTA 286 (448)
Q Consensus 265 ~~La~~a~~Gd~R~AL~lLe~a 286 (448)
..++..| +||+|.|+++++..
T Consensus 205 ~~l~~~a-~Gs~~~al~~l~~~ 225 (314)
T PRK07399 205 PELLALA-QGSPGAAIANIEQL 225 (314)
T ss_pred HHHHHHc-CCCHHHHHHHHHHH
Confidence 6788899 99999999998754
No 58
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.77 E-value=4.4e-18 Score=183.07 Aligned_cols=248 Identities=21% Similarity=0.247 Sum_probs=155.7
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhh-ccCccccccCCCccCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTA-TGREEEPDYDGWLADVT 105 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~-~gk~~a~~~d~~~~~~~ 105 (448)
-||.++.||++ |++++||+++.++ ++.++..... +.+.++||+.+|||+ |+.... +.+.....+. ++.
T Consensus 53 ~~~~~~~rp~~-f~~iiGqs~~i~~---l~~al~~~~~--~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~----~~~ 122 (531)
T TIGR02902 53 EPLSEKTRPKS-FDEIIGQEEGIKA---LKAALCGPNP--QHVIIYGPPGVGKTAAARLVLEEAKKNPASPFK----EGA 122 (531)
T ss_pred chHHHhhCcCC-HHHeeCcHHHHHH---HHHHHhCCCC--ceEEEECCCCCCHHHHHHHHHHHhhhccCCCcC----CCC
Confidence 48899999998 8999999999766 4555544433 347899999558876 663321 1111000110 112
Q ss_pred CccccCCCcc-cceeeeeecc--chhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEe
Q psy1686 106 KDLRCPDGEL-QKRKTVVHTV--TLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFID 182 (448)
Q Consensus 106 ~fv~~p~ge~-~k~kei~~~v--tLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfID 182 (448)
.|+.+.+... ...+.+.... +.|+-....+.. .|..+ +...-...+. ++ ..++||||
T Consensus 123 ~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~-------~g~~g-~~~~~~G~l~----------~a--~gG~L~Id 182 (531)
T TIGR02902 123 AFVEIDATTARFDERGIADPLIGSVHDPIYQGAGP-------LGIAG-IPQPKPGAVT----------RA--HGGVLFID 182 (531)
T ss_pred CEEEEccccccCCccccchhhcCCcccchhccccc-------cccCC-cccccCchhh----------cc--CCcEEEEe
Confidence 4554332110 0000000000 001100000000 00000 0000000011 11 24899999
Q ss_pred ccCCCCHHHHHHHHHhhhhcCC--------------C---eEEEE--ecCceeEeeccccCCCCCCChhhhhhcccccCC
Q psy1686 183 EVHMLDIECFSFLNRALESEMS--------------P---VVITA--TNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQ 243 (448)
Q Consensus 183 EVH~L~~~~f~~Llk~lEe~~~--------------p---i~Ila--T~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~ 243 (448)
|||+|+..+|+.|++.+|+... | ..|+. -.-...+|++||.+ +..+|++++|||..+.|+
T Consensus 183 EI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~-p~~L~paLrsR~~~I~f~ 261 (531)
T TIGR02902 183 EIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRN-PEEIPPALRSRCVEIFFR 261 (531)
T ss_pred chhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCC-cccCChHHhhhhheeeCC
Confidence 9999999999999999997420 1 01110 11234677887776 568999999999999999
Q ss_pred CCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 244 PYQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 244 pys~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
||+.+|+.+|++..+ ++++++++|++++ . +.|.+.|+++.|+.+|..++...|+.+||++++.
T Consensus 262 pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~-~-n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 262 PLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA-S-NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred CCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh-h-hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 999999999999765 9999999999987 4 8999999999998887656667899999999986
No 59
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.76 E-value=2.2e-18 Score=175.04 Aligned_cols=198 Identities=15% Similarity=0.102 Sum_probs=141.7
Q ss_pred cccccc-chhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCcccc
Q psy1686 40 SQGMVG-QLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGELQK 117 (448)
Q Consensus 40 ~~~~VG-Q~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k 117 (448)
++.++| |+++.+ .|.+++++|+++|.+ .++|||..||++ |+..++ .+.| + ...-.-|||+|.-
T Consensus 4 ~~~i~~~q~~~~~---~L~~~~~~~~l~ha~-Lf~G~~G~gk~~~a~~la~-------~l~c---~-~~~~~~~cg~C~~ 68 (329)
T PRK08058 4 WEQLTALQPVVVK---MLQNSIAKNRLSHAY-LFEGAKGTGKKATALWLAK-------SLFC---L-ERNGVEPCGTCTN 68 (329)
T ss_pred HHHHHhhHHHHHH---HHHHHHHcCCCCceE-EEECCCCCCHHHHHHHHHH-------HHCC---C-CCCCCCCCCcCHH
Confidence 577888 998875 589999999999822 689999448764 553322 2222 0 0111124555555
Q ss_pred eeeee--eccchhhhhhhccccccchhhhcCCCCCCc-hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHH
Q psy1686 118 RKTVV--HTVTLHEIDVINSRTHGFLALFAGDTGEIT-PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSF 194 (448)
Q Consensus 118 ~kei~--~~vtLheiD~~nsr~~g~~a~~~~~~~eI~-~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~ 194 (448)
|+.+. .+.++|.+.... . .|+ ++||+.++..-.. ..+| .++|++|||+|+++.+++|+
T Consensus 69 c~~~~~~~hpD~~~i~~~~------------~--~i~id~ir~l~~~~~~~-~~~~----~~kvviI~~a~~~~~~a~Na 129 (329)
T PRK08058 69 CKRIDSGNHPDVHLVAPDG------------Q--SIKKDQIRYLKEEFSKS-GVES----NKKVYIIEHADKMTASAANS 129 (329)
T ss_pred HHHHhcCCCCCEEEecccc------------c--cCCHHHHHHHHHHHhhC-Cccc----CceEEEeehHhhhCHHHHHH
Confidence 55444 355665553321 1 122 7888877654221 1233 35899999999999999999
Q ss_pred HHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy1686 195 LNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLMQTDGLRVLTKIALD 273 (448)
Q Consensus 195 Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Rai~deal~~La~~a~~ 273 (448)
|+|++||||.+ +||+.|+. +.+++++++|||++++|+|++.+++.+.|+.+.++++...+++..+
T Consensus 130 LLK~LEEPp~~~~~Il~t~~------------~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~gi~~~~~~~l~~~~-- 195 (329)
T PRK08058 130 LLKFLEEPSGGTTAILLTEN------------KHQILPTILSRCQVVEFRPLPPESLIQRLQEEGISESLATLLAGLT-- 195 (329)
T ss_pred HHHHhcCCCCCceEEEEeCC------------hHhCcHHHHhhceeeeCCCCCHHHHHHHHHHcCCChHHHHHHHHHc--
Confidence 99999999887 67777775 7789999999999999999999999999985558888777777764
Q ss_pred CCHHHHHHHHHH
Q psy1686 274 TSLRYAIQLITT 285 (448)
Q Consensus 274 Gd~R~AL~lLe~ 285 (448)
|+++.|+.+++.
T Consensus 196 g~~~~A~~l~~~ 207 (329)
T PRK08058 196 NSVEEALALSED 207 (329)
T ss_pred CCHHHHHHHhcC
Confidence 689999988763
No 60
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.75 E-value=2.4e-17 Score=163.50 Aligned_cols=212 Identities=19% Similarity=0.220 Sum_probs=150.2
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.+..+..||++ +++++||+++.+. |+++++.++.++ +.++|+|..|||+ ++...+. ... .+....
T Consensus 5 ~~w~~kyrP~~-~~~~~g~~~~~~~---l~~~i~~~~~~~--~ll~G~~G~GKt~~~~~l~~~-------l~~-~~~~~~ 70 (319)
T PRK00440 5 EIWVEKYRPRT-LDEIVGQEEIVER---LKSYVKEKNMPH--LLFAGPPGTGKTTAALALARE-------LYG-EDWREN 70 (319)
T ss_pred CccchhhCCCc-HHHhcCcHHHHHH---HHHHHhCCCCCe--EEEECCCCCCHHHHHHHHHHH-------HcC-Cccccc
Confidence 46678999998 7999999998754 889998887766 8999999558875 4422111 000 000001
Q ss_pred ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 107 DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
|+ +++....+ +. +-+++.+........ .+.. .++++||||+|.
T Consensus 71 ~i--------------------~~~~~~~~---------~~-----~~~~~~i~~~~~~~~-~~~~--~~~vviiDe~~~ 113 (319)
T PRK00440 71 FL--------------------ELNASDER---------GI-----DVIRNKIKEFARTAP-VGGA--PFKIIFLDEADN 113 (319)
T ss_pred eE--------------------Eecccccc---------ch-----HHHHHHHHHHHhcCC-CCCC--CceEEEEeCccc
Confidence 11 11111111 11 234444443322211 1111 258999999999
Q ss_pred CCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------C
Q psy1686 187 LDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------M 259 (448)
Q Consensus 187 L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i 259 (448)
|+.+.++.|.+.+|+++.. .+|++++. +.++.+++.|||.++.|+|++.+++..++..++ +
T Consensus 114 l~~~~~~~L~~~le~~~~~~~lIl~~~~------------~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i 181 (319)
T PRK00440 114 LTSDAQQALRRTMEMYSQNTRFILSCNY------------SSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEI 181 (319)
T ss_pred CCHHHHHHHHHHHhcCCCCCeEEEEeCC------------ccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999986654 66666554 456778999999999999999999999998766 9
Q ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 260 QTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 260 ~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+++++++|++.+ +||+|.|++.|+.+... +..||.++|+.+..
T Consensus 182 ~~~al~~l~~~~-~gd~r~~~~~l~~~~~~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 182 TDDALEAIYYVS-EGDMRKAINALQAAAAT-----GKEVTEEAVYKITG 224 (319)
T ss_pred CHHHHHHHHHHc-CCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHhC
Confidence 999999999999 99999999999976543 34799999998875
No 61
>PRK14700 recombination factor protein RarA; Provisional
Probab=99.74 E-value=3.8e-18 Score=170.25 Aligned_cols=96 Identities=10% Similarity=0.130 Sum_probs=84.9
Q ss_pred ecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-------------CCHHHHHHHHHHcCCCCHH
Q psy1686 211 TNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-------------MQTDGLRVLTKIALDTSLR 277 (448)
Q Consensus 211 T~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra-------------i~deal~~La~~a~~Gd~R 277 (448)
++|.+++||+|||||+|.++++|||||+||.|+|++.++|.++|+ || ++++++++|++.| +||+|
T Consensus 5 E~G~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~-ral~~~~~~~~~~~~i~~~al~~ia~~a-~GDaR 82 (300)
T PRK14700 5 ESGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIE-KALSQDEVLAKHKFKIDDGLYNAMHNYN-EGDCR 82 (300)
T ss_pred cCCcEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHH-HHHHhhhccCCcCCCcCHHHHHHHHHhc-CCHHH
Confidence 479999999999999999999999999999999999999999998 44 8899999999999 99999
Q ss_pred HHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 278 YAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 278 ~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
.|||+||.|...+...+...||.++|+++++
T Consensus 83 ~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~ 113 (300)
T PRK14700 83 KILNLLERMFLISTRGDEIYLNKELFDQAVG 113 (300)
T ss_pred HHHHHHHHHHhhccccCCCccCHHHHHHHHh
Confidence 9999999987543222223599999999885
No 62
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.73 E-value=2.4e-17 Score=167.75 Aligned_cols=188 Identities=14% Similarity=0.052 Sum_probs=134.7
Q ss_pred HHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCcccceeeee--eccchhhhh
Q psy1686 55 VVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVV--HTVTLHEID 131 (448)
Q Consensus 55 ~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~--~~vtLheiD 131 (448)
...+++++||++|. ..++||+..||++ |+.. |+.+.|.. + .... |||+|..|+.+. .+.++|.+.
T Consensus 11 ~~~~~~~~~r~~ha-~Lf~G~~G~GK~~~A~~~-------A~~llC~~-~-~~~~--~Cg~C~sC~~~~~g~HPD~~~i~ 78 (328)
T PRK05707 11 LWQQLAGRGRHPHA-YLLHGPAGIGKRALAERL-------AAALLCEA-P-QGGG--ACGSCKGCQLLRAGSHPDNFVLE 78 (328)
T ss_pred HHHHHHHCCCccee-eeeECCCCCCHHHHHHHH-------HHHHcCCC-C-CCCC--CCCCCHHHHHHhcCCCCCEEEEe
Confidence 46778889999883 3578988447764 5433 33344310 0 1122 556665555554 466777774
Q ss_pred hhccc-cccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEE
Q psy1686 132 VINSR-THGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSP-VVIT 209 (448)
Q Consensus 132 ~~nsr-~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~Il 209 (448)
-..+. .-++ ++||+.+.... ....+| .++|++|||+|+++.+++|+|+|++|||+.. +||+
T Consensus 79 ~~~~~~~i~i------------d~iR~l~~~~~-~~~~~~----~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL 141 (328)
T PRK05707 79 PEEADKTIKV------------DQVRELVSFVV-QTAQLG----GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLL 141 (328)
T ss_pred ccCCCCCCCH------------HHHHHHHHHHh-hccccC----CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 43221 1122 88998665543 222334 3589999999999999999999999999876 7777
Q ss_pred EecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc--CCHHHHHHHHHHcCCCCHHHHHHHHH
Q psy1686 210 ATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL--MQTDGLRVLTKIALDTSLRYAIQLIT 284 (448)
Q Consensus 210 aT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra--i~deal~~La~~a~~Gd~R~AL~lLe 284 (448)
.|+. +..++++++|||++++|.|++.+++.+.|..+. .+++....++.++ +|++..|+.+++
T Consensus 142 ~t~~------------~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~la-~Gsp~~A~~l~~ 205 (328)
T PRK05707 142 ISHQ------------PSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPESDERERIELLTLA-GGSPLRALQLHE 205 (328)
T ss_pred EECC------------hhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccCChHHHHHHHHHc-CCCHHHHHHHHC
Confidence 7777 777999999999999999999999999998653 6666667788899 999999998865
No 63
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.72 E-value=1.3e-16 Score=158.52 Aligned_cols=131 Identities=22% Similarity=0.216 Sum_probs=107.2
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEe---------cCceeEeeccccCCCCCCChhhhhhcc-cccCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITAT---------NRGVTKIRGTAYSSPHGIPIDLLDRMV-IIPTQPY 245 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT---------~~~i~lI~~Ttenp~~~Ip~~lLSR~~-ii~~~py 245 (448)
+.+|||||+|+++.++++.|..++++.-..+++.+. -...++|++|+.+ ..++++++|||. ++.|.||
T Consensus 82 ~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~--~~l~~~l~sR~~~~~~l~~l 159 (305)
T TIGR00635 82 GDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA--GMLTSPLRDRFGIILRLEFY 159 (305)
T ss_pred CCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc--cccCHHHHhhcceEEEeCCC
Confidence 479999999999999999999999876654433211 0125677777654 468899999994 6899999
Q ss_pred CHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 246 QDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 246 s~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
+.+|+.++++.++ ++++++++|++.+ +|++|.++++++.+..+|...+...|+.+++++++..
T Consensus 160 ~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~-~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 160 TVEELAEIVSRSAGLLNVEIEPEAALEIARRS-RGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred CHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh-CCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 9999999999766 9999999999999 9999999999999877765445567999999999876
No 64
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.72 E-value=5.3e-17 Score=164.97 Aligned_cols=192 Identities=10% Similarity=0.073 Sum_probs=135.3
Q ss_pred HHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCcccceeeeeeccchhhhhh
Q psy1686 54 GVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDV 132 (448)
Q Consensus 54 ~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~ 132 (448)
.-|.+++++||++|- ..|.||+..||++ |+..+ +...|. ....-.+|..|..|+.-.-..+.++|.++-
T Consensus 12 ~~l~~~~~~~rl~HA-~Lf~G~~G~GK~~lA~~~A-------~~llC~--~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 12 QQITQAFQQGLGHHA-LLFKADSGLGTEQLIRALA-------QWLMCQ--TPQGDQPCGQCHSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred HHHHHHHHcCCccee-EEeECCCCCCHHHHHHHHH-------HHHcCC--CCCCCCCCCCCHHHHHHhcCCCCCEEEEcc
Confidence 458899999999982 3478887337754 44332 222220 001122444444444444455888888753
Q ss_pred hccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEEe
Q psy1686 133 INSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSP-VVITAT 211 (448)
Q Consensus 133 ~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT 211 (448)
...+.- ++ ++||+.++.. .....+|+ ++|++||++|+++.+++|+|+|++||||.. +||+.|
T Consensus 82 ~~~~~I-------~i-----d~iR~l~~~~-~~~~~~g~----~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t 144 (325)
T PRK06871 82 IDNKDI-------GV-----DQVREINEKV-SQHAQQGG----NKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQA 144 (325)
T ss_pred ccCCCC-------CH-----HHHHHHHHHH-hhccccCC----ceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 222212 22 8999765543 33334453 599999999999999999999999999987 777777
Q ss_pred cCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-CCHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy1686 212 NRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-MQTDGLRVLTKIALDTSLRYAIQLITT 285 (448)
Q Consensus 212 ~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra-i~deal~~La~~a~~Gd~R~AL~lLe~ 285 (448)
+. +..++++++|||++++|.|++.+++.+.|..++ .+++....+++++ +|++-.|+.+++.
T Consensus 145 ~~------------~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~l~-~g~p~~A~~~~~~ 206 (325)
T PRK06871 145 DL------------SAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSAEISEILTALRIN-YGRPLLALTFLEQ 206 (325)
T ss_pred CC------------hHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhccChHHHHHHHHHc-CCCHHHHHHHhhC
Confidence 76 788999999999999999999999999998654 5554566777888 8999999888754
No 65
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.72 E-value=4.9e-17 Score=163.42 Aligned_cols=187 Identities=13% Similarity=0.145 Sum_probs=133.8
Q ss_pred ccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCcccce
Q psy1686 40 SQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGELQKR 118 (448)
Q Consensus 40 ~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~ 118 (448)
|+++|||+++.+. |.+++++|+++|.+ .++||+..||++ |+..+ +.+-| . . |.|
T Consensus 3 ~~~i~g~~~~~~~---l~~~~~~~~~~ha~-Lf~G~~G~Gk~~la~~~a-------~~l~c---~-~-----~~~----- 57 (313)
T PRK05564 3 FHTIIGHENIKNR---IKNSIIKNRFSHAH-IIVGEDGIGKSLLAKEIA-------LKILG---K-S-----QQR----- 57 (313)
T ss_pred hhhccCcHHHHHH---HHHHHHcCCCCceE-EeECCCCCCHHHHHHHHH-------HHHcC---C-C-----CCC-----
Confidence 7899999999755 89999999999832 688998448765 44221 11111 0 0 001
Q ss_pred eeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHh
Q psy1686 119 KTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRA 198 (448)
Q Consensus 119 kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~ 198 (448)
.+.++++++..+ |....+ ++||+.+... .....+| .++|++||++|+++.+++|+|+|+
T Consensus 58 ----~h~D~~~~~~~~-----------~~~i~v-~~ir~~~~~~-~~~p~~~----~~kv~iI~~ad~m~~~a~naLLK~ 116 (313)
T PRK05564 58 ----EYVDIIEFKPIN-----------KKSIGV-DDIRNIIEEV-NKKPYEG----DKKVIIIYNSEKMTEQAQNAFLKT 116 (313)
T ss_pred ----CCCCeEEecccc-----------CCCCCH-HHHHHHHHHH-hcCcccC----CceEEEEechhhcCHHHHHHHHHH
Confidence 122222222211 111111 7888877644 2222333 369999999999999999999999
Q ss_pred hhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc--CCHHHHHHHHHHcCCCC
Q psy1686 199 LESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL--MQTDGLRVLTKIALDTS 275 (448)
Q Consensus 199 lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra--i~deal~~La~~a~~Gd 275 (448)
+|+||.. +||+.|+. +..++++++|||++++|.+++.+++.+.|..+. +++++++.++.++ +|+
T Consensus 117 LEepp~~t~~il~~~~------------~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~g~ 183 (313)
T PRK05564 117 IEEPPKGVFIILLCEN------------LEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYNDIKEEEKKSAIAFS-DGI 183 (313)
T ss_pred hcCCCCCeEEEEEeCC------------hHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcCCCHHHHHHHHHHc-CCC
Confidence 9999876 66666655 678999999999999999999999999998663 8899999999999 899
Q ss_pred HHHHHHHHHH
Q psy1686 276 LRYAIQLITT 285 (448)
Q Consensus 276 ~R~AL~lLe~ 285 (448)
...|+..+..
T Consensus 184 ~~~a~~~~~~ 193 (313)
T PRK05564 184 PGKVEKFIED 193 (313)
T ss_pred HHHHHHHhcc
Confidence 9988776543
No 66
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.72 E-value=3e-17 Score=152.81 Aligned_cols=182 Identities=15% Similarity=0.150 Sum_probs=127.3
Q ss_pred HHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCcccceeeeee--ccchhhhh
Q psy1686 55 VVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVH--TVTLHEID 131 (448)
Q Consensus 55 ~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~~--~vtLheiD 131 (448)
.|+++|++|++++ ...++|||..|||+ ++..+. .+.+ ....... |+|.|..|+.+.+ +.+++.++
T Consensus 3 ~l~~~i~~~~~~~-~~L~~G~~G~gkt~~a~~~~~-------~l~~--~~~~~~~--~c~~~~~c~~~~~~~~~d~~~~~ 70 (188)
T TIGR00678 3 QLKRALEKGRLAH-AYLFAGPEGVGKELLALALAK-------ALLC--EQPGGGE--PCGECPSCRLIEAGNHPDLHRLE 70 (188)
T ss_pred HHHHHHHcCCCCe-EEEEECCCCCCHHHHHHHHHH-------HHcC--CCCCCCC--CCCCCHHHHHHHcCCCCcEEEec
Confidence 4789999999976 35689999558875 442211 1111 0011223 3455555555432 33444443
Q ss_pred hhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEE
Q psy1686 132 VINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSP-VVITA 210 (448)
Q Consensus 132 ~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~Ila 210 (448)
..+.. .+. +++|+.++.+. .....+ .+.|+||||+|+|+.++++.|++.+|+++.. .||+.
T Consensus 71 ~~~~~--------~~~-----~~i~~i~~~~~-~~~~~~----~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 71 PEGQS--------IKV-----DQVRELVEFLS-RTPQES----GRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred cccCc--------CCH-----HHHHHHHHHHc-cCcccC----CeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 32211 111 78887665542 222233 3589999999999999999999999997654 66666
Q ss_pred ecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhcCCHHHHHHHHHHcCCCCHHHH
Q psy1686 211 TNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLMQTDGLRVLTKIALDTSLRYA 279 (448)
Q Consensus 211 T~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Rai~deal~~La~~a~~Gd~R~A 279 (448)
|+. +.++++++.|||.++.|.|++.+++.++|+.+.++++++++|++.+ +||+|.|
T Consensus 133 ~~~------------~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~i~~~~-~g~~r~~ 188 (188)
T TIGR00678 133 TPS------------PEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQGISEEAAELLLALA-GGSPGAA 188 (188)
T ss_pred ECC------------hHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcCCCHHHHHHHHHHc-CCCcccC
Confidence 665 4679999999999999999999999999986669999999999999 9999976
No 67
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.70 E-value=3.7e-16 Score=156.38 Aligned_cols=232 Identities=16% Similarity=0.144 Sum_probs=147.4
Q ss_pred CCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccc
Q psy1686 31 DDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLR 109 (448)
Q Consensus 31 ~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~ 109 (448)
.+..||++ +++++||++++.. |.+++++++.++ +.++||+..|||+ ++.... .+.+ .+....++.
T Consensus 6 ~~ky~P~~-~~~~~g~~~~~~~---L~~~~~~~~~~~--lll~Gp~GtGKT~la~~~~~-------~l~~-~~~~~~~~~ 71 (337)
T PRK12402 6 TEKYRPAL-LEDILGQDEVVER---LSRAVDSPNLPH--LLVQGPPGSGKTAAVRALAR-------ELYG-DPWENNFTE 71 (337)
T ss_pred HHhhCCCc-HHHhcCCHHHHHH---HHHHHhCCCCce--EEEECCCCCCHHHHHHHHHH-------HhcC-cccccceEE
Confidence 46789999 7999999998755 788888888766 7899999558875 442211 1110 000012233
Q ss_pred cCCCcccce-eeeeeccchhhhhhhccccccchhhhcCCCCC-CchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCC
Q psy1686 110 CPDGELQKR-KTVVHTVTLHEIDVINSRTHGFLALFAGDTGE-ITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHML 187 (448)
Q Consensus 110 ~p~ge~~k~-kei~~~vtLheiD~~nsr~~g~~a~~~~~~~e-I~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L 187 (448)
++..+.+.. +.... -| -+... +.... +..+. ..+.+|+.+.... ......-.++++||||+|.|
T Consensus 72 i~~~~~~~~~~~~~~---~~-~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~vlilDe~~~l 137 (337)
T PRK12402 72 FNVADFFDQGKKYLV---ED-PRFAH-----FLGTD-KRIRSSKIDNFKHVLKEYA----SYRPLSADYKTILLDNAEAL 137 (337)
T ss_pred echhhhhhcchhhhh---cC-cchhh-----hhhhh-hhhccchHHHHHHHHHHHH----hcCCCCCCCcEEEEeCcccC
Confidence 222222100 00000 00 00000 00000 00000 0133444333221 11111113579999999999
Q ss_pred CHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------CC
Q psy1686 188 DIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQ 260 (448)
Q Consensus 188 ~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i~ 260 (448)
+.+.++.|.+.+|+++.. .||++++. +..++++|.|||..+.|.|++.+++.++|+..+ ++
T Consensus 138 ~~~~~~~L~~~le~~~~~~~~Il~~~~------------~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~ 205 (337)
T PRK12402 138 REDAQQALRRIMEQYSRTCRFIIATRQ------------PSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD 205 (337)
T ss_pred CHHHHHHHHHHHHhccCCCeEEEEeCC------------hhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999987653 56666554 345778999999999999999999999998654 89
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 261 TDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 261 deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++|++.+ .||+|.+++.|+.++. +...||.++|++++.
T Consensus 206 ~~al~~l~~~~-~gdlr~l~~~l~~~~~-----~~~~It~~~v~~~~~ 247 (337)
T PRK12402 206 DDGLELIAYYA-GGDLRKAILTLQTAAL-----AAGEITMEAAYEALG 247 (337)
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHH-----cCCCCCHHHHHHHhC
Confidence 99999999999 9999999999986541 223799999998764
No 68
>PRK04132 replication factor C small subunit; Provisional
Probab=99.70 E-value=1.2e-16 Score=178.80 Aligned_cols=135 Identities=24% Similarity=0.316 Sum_probs=112.4
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCCh
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPI 231 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~ 231 (448)
++||+.|..........+. .++|+||||+|+|+.++|++|+|++|+|+.. .||++||. ++++++
T Consensus 611 d~IR~iIk~~a~~~~~~~~---~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~------------~~kIi~ 675 (846)
T PRK04132 611 NVIREKVKEFARTKPIGGA---SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNY------------SSKIIE 675 (846)
T ss_pred HHHHHHHHHHHhcCCcCCC---CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCC------------hhhCch
Confidence 7899888765432211111 2589999999999999999999999998765 78888887 899999
Q ss_pred hhhhhcccccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHH
Q psy1686 232 DLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRK 305 (448)
Q Consensus 232 ~lLSR~~ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~ 305 (448)
+|+|||++|+|+|++.+++.++|+..| ++++++..|++.| +||+|.|+|+|+.++.. ...||.++|..
T Consensus 676 tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s-~GDlR~AIn~Lq~~~~~-----~~~It~~~V~~ 749 (846)
T PRK04132 676 PIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIA-EGDMRRAINILQAAAAL-----DDKITDENVFL 749 (846)
T ss_pred HHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh-----cCCCCHHHHHH
Confidence 999999999999999999999888544 7899999999999 99999999999987532 23688888877
Q ss_pred HHH
Q psy1686 306 VYA 308 (448)
Q Consensus 306 ~~~ 308 (448)
+.+
T Consensus 750 ~~~ 752 (846)
T PRK04132 750 VAS 752 (846)
T ss_pred HhC
Confidence 664
No 69
>KOG0991|consensus
Probab=99.69 E-value=1.5e-16 Score=153.80 Aligned_cols=228 Identities=18% Similarity=0.172 Sum_probs=164.0
Q ss_pred CCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCC
Q psy1686 27 GLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVT 105 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~ 105 (448)
-+|.-+..||.. ++++||-+.... -|.-+.++|.+++ ++++|||..|||| ..+. |+++ +|+
T Consensus 14 ~l~wVeKYrP~~-l~dIVGNe~tv~---rl~via~~gnmP~--liisGpPG~GKTTsi~~L-------Ar~L---LG~-- 75 (333)
T KOG0991|consen 14 QLPWVEKYRPSV-LQDIVGNEDTVE---RLSVIAKEGNMPN--LIISGPPGTGKTTSILCL-------AREL---LGD-- 75 (333)
T ss_pred cchHHHhhCchH-HHHhhCCHHHHH---HHHHHHHcCCCCc--eEeeCCCCCchhhHHHHH-------HHHH---hCh--
Confidence 345678899998 799999999864 4677788999999 9999999558876 1111 2221 221
Q ss_pred CccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccC
Q psy1686 106 KDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVH 185 (448)
Q Consensus 106 ~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH 185 (448)
.|-. |++.+.+++...| |-+|..|..-.++.+---+. ..+|+++||++
T Consensus 76 ~~ke-----------------------------~vLELNASdeRGI-DvVRn~IK~FAQ~kv~lp~g--rhKIiILDEAD 123 (333)
T KOG0991|consen 76 SYKE-----------------------------AVLELNASDERGI-DVVRNKIKMFAQKKVTLPPG--RHKIIILDEAD 123 (333)
T ss_pred hhhh-----------------------------HhhhccCcccccc-HHHHHHHHHHHHhhccCCCC--ceeEEEeeccc
Confidence 2211 2444444444455 88998887544333222111 24899999999
Q ss_pred CCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------
Q psy1686 186 MLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------ 258 (448)
Q Consensus 186 ~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------ 258 (448)
..+..+|.+|.|++|=+... .|++|.|. +-+|..++.|||.+++|..+++.++-+.|...+
T Consensus 124 SMT~gAQQAlRRtMEiyS~ttRFalaCN~------------s~KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~ 191 (333)
T KOG0991|consen 124 SMTAGAQQALRRTMEIYSNTTRFALACNQ------------SEKIIEPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVN 191 (333)
T ss_pred hhhhHHHHHHHHHHHHHcccchhhhhhcc------------hhhhhhhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCC
Confidence 99999999999999987764 78888887 788999999999999999999999877666443
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHH------------HHHHHHhc--chhHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDI------------RKVYALFL--DEGRSTQYLRE 322 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V------------~~~~~lf~--D~~~s~~~L~~ 322 (448)
|++++|+.|...| +||+|.|||-|..... +-..|+.|.| ++++.-.. +...+++.|.+
T Consensus 192 yt~dgLeaiifta-~GDMRQalNnLQst~~-----g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~~~~~~A~~il~~ 263 (333)
T KOG0991|consen 192 YTDDGLEAIIFTA-QGDMRQALNNLQSTVN-----GFGLVNQENVFKVCDEPHPLLVKKMLQACLKRNIDEALKILAE 263 (333)
T ss_pred CCcchHHHhhhhc-cchHHHHHHHHHHHhc-----cccccchhhhhhccCCCChHHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999 9999999999985532 2234444444 44444322 45677777753
No 70
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.68 E-value=1.6e-16 Score=162.08 Aligned_cols=193 Identities=12% Similarity=0.055 Sum_probs=137.3
Q ss_pred HHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCcccceeeeeeccchhhhhh
Q psy1686 54 GVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDV 132 (448)
Q Consensus 54 ~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~ 132 (448)
.-|.+++++||++| -..|.||+..||++ |.-. |+..-|. .+ ..-.+|..|..|+.-+-..+.|+|.+.-
T Consensus 12 ~~l~~~~~~~rl~H-A~Lf~G~~G~Gk~~lA~~~-------A~~LlC~-~~-~~~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (334)
T PRK07993 12 EQLVGSYQAGRGHH-ALLIQALPGMGDDALIYAL-------SRWLMCQ-QP-QGHKSCGHCRGCQLMQAGTHPDYYTLTP 81 (334)
T ss_pred HHHHHHHHcCCcce-EEeeECCCCCCHHHHHHHH-------HHHHcCC-CC-CCCCCCCCCHHHHHHHcCCCCCEEEEec
Confidence 34789999999998 23478888447754 4322 2222220 00 1112444444444444556888887743
Q ss_pred hccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEEe
Q psy1686 133 INSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSP-VVITAT 211 (448)
Q Consensus 133 ~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT 211 (448)
-...+ .+ ++ ++||+.+... .....+| .++|++||++++++.++.|+|+|++||||.. +||+.|
T Consensus 82 ~~~~~-~I-----~i-----dqiR~l~~~~-~~~~~~g----~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t 145 (334)
T PRK07993 82 EKGKS-SL-----GV-----DAVREVTEKL-YEHARLG----GAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLAC 145 (334)
T ss_pred ccccc-cC-----CH-----HHHHHHHHHH-hhccccC----CceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 21110 01 12 7888866554 3333444 3599999999999999999999999999887 888888
Q ss_pred cCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-CCHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy1686 212 NRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-MQTDGLRVLTKIALDTSLRYAIQLITT 285 (448)
Q Consensus 212 ~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra-i~deal~~La~~a~~Gd~R~AL~lLe~ 285 (448)
+. +..+++|++|||+.+.|.|.+.+++.+.|..+. ++++....+++++ +|++..|+.+++.
T Consensus 146 ~~------------~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~~~~~~a~~~~~la-~G~~~~Al~l~~~ 207 (334)
T PRK07993 146 RE------------PARLLATLRSRCRLHYLAPPPEQYALTWLSREVTMSQDALLAALRLS-AGAPGAALALLQP 207 (334)
T ss_pred CC------------hhhChHHHHhccccccCCCCCHHHHHHHHHHccCCCHHHHHHHHHHc-CCCHHHHHHHhcC
Confidence 87 888999999999999999999999999997553 8888788889999 9999999988763
No 71
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.66 E-value=2.5e-15 Score=150.15 Aligned_cols=205 Identities=15% Similarity=0.107 Sum_probs=141.0
Q ss_pred CCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCC
Q psy1686 27 GLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVT 105 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~ 105 (448)
-++..+..||++ ++++|||++++.. +...+++|+++++ ..++||+..|||+ ++.... ..+ .
T Consensus 8 ~~~w~~kyrP~~-~~~~~~~~~~~~~---l~~~~~~~~~~~~-lll~G~~G~GKT~la~~l~~-------~~~----~-- 69 (316)
T PHA02544 8 EFMWEQKYRPST-IDECILPAADKET---FKSIVKKGRIPNM-LLHSPSPGTGKTTVAKALCN-------EVG----A-- 69 (316)
T ss_pred CCcceeccCCCc-HHHhcCcHHHHHH---HHHHHhcCCCCeE-EEeeCcCCCCHHHHHHHHHH-------HhC----c--
Confidence 356788999998 8999999999764 8888999998872 2348998558875 442211 111 0
Q ss_pred CccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccC
Q psy1686 106 KDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVH 185 (448)
Q Consensus 106 ~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH 185 (448)
.+ +++++.. +. .+.+|+.+..........+ .++|+||||+|
T Consensus 70 ~~--------------------~~i~~~~--------------~~-~~~i~~~l~~~~~~~~~~~----~~~vliiDe~d 110 (316)
T PHA02544 70 EV--------------------LFVNGSD--------------CR-IDFVRNRLTRFASTVSLTG----GGKVIIIDEFD 110 (316)
T ss_pred cc--------------------eEeccCc--------------cc-HHHHHHHHHHHHHhhcccC----CCeEEEEECcc
Confidence 11 1121111 01 1455655544322221112 25899999999
Q ss_pred CC-CHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHH-------
Q psy1686 186 ML-DIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKI------- 256 (448)
Q Consensus 186 ~L-~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~------- 256 (448)
++ +.++++.|.+.+|+++.. .||++++. +.+++++++|||.++.|.+++.++..++++.
T Consensus 111 ~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~------------~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~ 178 (316)
T PHA02544 111 RLGLADAQRHLRSFMEAYSKNCSFIITANN------------KNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKG 178 (316)
T ss_pred cccCHHHHHHHHHHHHhcCCCceEEEEcCC------------hhhchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 99 778889998889987665 56666654 5679999999999999989888876544331
Q ss_pred hc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHH
Q psy1686 257 RL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 257 Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~ 307 (448)
.+ ++++++..+++.+ .||.|.+++.|+... . ...|+.+++....
T Consensus 179 ~~~~~~~~i~~~al~~l~~~~-~~d~r~~l~~l~~~~--~----~~~i~~~~l~~~~ 228 (316)
T PHA02544 179 ILEAEGVEVDMKVLAALVKKN-FPDFRRTINELQRYA--S----TGKIDAGILSEVT 228 (316)
T ss_pred HHHhcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHH--c----cCCCCHHHHHHhh
Confidence 11 8999999999998 899999999999553 1 2368877766543
No 72
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.64 E-value=3.5e-15 Score=144.76 Aligned_cols=207 Identities=18% Similarity=0.177 Sum_probs=138.1
Q ss_pred CCCCCCCCCccccccccc-cchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCC
Q psy1686 27 GLGLDDSLEPRKVSQGMV-GQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADV 104 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~V-GQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~ 104 (448)
=|+|+-.+.|...|++|+ | .+ ..+...++++.... .+|++.++||+..|||. +...... ... .|..
T Consensus 8 Ql~l~~~~~~~~~fd~f~~~-~n-~~a~~~l~~~~~~~--~~~~l~l~Gp~G~GKThLl~a~~~~-------~~~-~~~~ 75 (235)
T PRK08084 8 QLSLPLYLPDDETFASFYPG-DN-DSLLAALQNALRQE--HSGYIYLWSREGAGRSHLLHAACAE-------LSQ-RGRA 75 (235)
T ss_pred ceecCCCCCCcCCccccccC-cc-HHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH-------HHh-CCCe
Confidence 478887788888899999 5 22 33556677776544 23568899998448875 3311110 000 0111
Q ss_pred CCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 105 TKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 105 ~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
..|++ +.+. . ... .++++.+. . ..+||||||
T Consensus 76 v~y~~-----------------~~~~---~----------~~~-----~~~~~~~~----------~----~dlliiDdi 106 (235)
T PRK08084 76 VGYVP-----------------LDKR---A----------WFV-----PEVLEGME----------Q----LSLVCIDNI 106 (235)
T ss_pred EEEEE-----------------HHHH---h----------hhh-----HHHHHHhh----------h----CCEEEEeCh
Confidence 23444 1110 0 000 23332221 1 268999999
Q ss_pred CCCCHH------HHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCC---CChhhhhhc---ccccCCCCCHHHHHH
Q psy1686 185 HMLDIE------CFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHG---IPIDLLDRM---VIIPTQPYQDEEIQA 252 (448)
Q Consensus 185 H~L~~~------~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~---Ip~~lLSR~---~ii~~~pys~~eI~~ 252 (448)
|++... .|+.+++.+|. +...+|.+++ +||.. +.++|.||| .++.++|++.+++.+
T Consensus 107 ~~~~~~~~~~~~lf~l~n~~~e~-----------g~~~li~ts~-~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~ 174 (235)
T PRK08084 107 ECIAGDELWEMAIFDLYNRILES-----------GRTRLLITGD-RPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQ 174 (235)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHc-----------CCCeEEEeCC-CChHHcCcccHHHHHHHhCCceeeecCCCHHHHHH
Confidence 999643 27888898883 3223333333 56666 578999999 899999999999999
Q ss_pred HHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 253 ILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 253 IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+|+.++ ++++++++|++.+ +||+|.++++|+.....+. ..++.||.+.+++++.
T Consensus 175 ~l~~~a~~~~~~l~~~v~~~L~~~~-~~d~r~l~~~l~~l~~~~l-~~~~~it~~~~k~~l~ 234 (235)
T PRK08084 175 ALQLRARLRGFELPEDVGRFLLKRL-DREMRTLFMTLDQLDRASI-TAQRKLTIPFVKEILK 234 (235)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHH-hcCCCCCHHHHHHHHc
Confidence 998656 9999999999999 9999999999998643332 2345699999998874
No 73
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.64 E-value=3.4e-15 Score=163.36 Aligned_cols=247 Identities=17% Similarity=0.212 Sum_probs=153.8
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCcc-ccccCCCccCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREE-EPDYDGWLADVT 105 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~-a~~~d~~~~~~~ 105 (448)
=++++.+||++ |++++||.++.++ +++++..+...+ +.++||+..|||| +++.....+.. ...+. .+.
T Consensus 142 ~~~~~~~rp~~-~~~iiGqs~~~~~---l~~~ia~~~~~~--vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~----~~~ 211 (615)
T TIGR02903 142 KSAQSLLRPRA-FSEIVGQERAIKA---LLAKVASPFPQH--IILYGPPGVGKTTAARLALEEAKKLKHTPFA----EDA 211 (615)
T ss_pred hHHhhhcCcCc-HHhceeCcHHHHH---HHHHHhcCCCCe--EEEECCCCCCHHHHHHHHHHhhhhccCCccc----CCC
Confidence 45788899998 7999999999875 566676665544 8899998559987 66542221110 00000 112
Q ss_pred CccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHH----HHhCc-ccccCeEEE
Q psy1686 106 KDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEW----REEGK-AEIVPGVLF 180 (448)
Q Consensus 106 ~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~----~~~g~-~~i~~~VLf 180 (448)
.|+...+..+. .+..++ .| .++.. ..+...+...+..... ...|. .....++||
T Consensus 212 ~fv~i~~~~l~--------~d~~~i--~~-------~llg~----~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~ 270 (615)
T TIGR02903 212 PFVEVDGTTLR--------WDPREV--TN-------PLLGS----VHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLF 270 (615)
T ss_pred CeEEEechhcc--------CCHHHH--hH-------HhcCC----ccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEE
Confidence 45543222110 000110 00 01111 1111111111000000 00000 012358999
Q ss_pred EeccCCCCHHHHHHHHHhhhhcCC--------------C-----eEEEEecCceeEeeccccCCCCCCChhhhhhccccc
Q psy1686 181 IDEVHMLDIECFSFLNRALESEMS--------------P-----VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIP 241 (448)
Q Consensus 181 IDEVH~L~~~~f~~Llk~lEe~~~--------------p-----i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~ 241 (448)
|||+|+|+..+|+.|++.+|+..- | .+--.....+++|++||.+|. .++++|+|||..+.
T Consensus 271 LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~-~l~~aLrSR~~~i~ 349 (615)
T TIGR02903 271 IDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPE-EINPALRSRCAEVF 349 (615)
T ss_pred EeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEecccccc-ccCHHHHhceeEEE
Confidence 999999999999999999997320 0 000011223688888888754 68999999999999
Q ss_pred CCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhh--------hhCCCcccHHHHHHHH
Q psy1686 242 TQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCR--------RRKATEICMEDIRKVY 307 (448)
Q Consensus 242 ~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~--------~~~~~~It~e~V~~~~ 307 (448)
|.||+.+|+.+|++..+ ++++++++|++++ . +.|+|++.|+.+..++. ..+...|+.++|++++
T Consensus 350 ~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys-~-~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l 427 (615)
T TIGR02903 350 FEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYT-I-EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVI 427 (615)
T ss_pred eCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCC-C-cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHh
Confidence 99999999999999654 8999999999987 3 77999999988865531 1122369999999998
Q ss_pred H
Q psy1686 308 A 308 (448)
Q Consensus 308 ~ 308 (448)
+
T Consensus 428 ~ 428 (615)
T TIGR02903 428 Q 428 (615)
T ss_pred C
Confidence 7
No 74
>PRK04195 replication factor C large subunit; Provisional
Probab=99.63 E-value=5.6e-15 Score=157.18 Aligned_cols=205 Identities=14% Similarity=0.206 Sum_probs=141.0
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHh---cCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCC
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIK---EEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADV 104 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~---~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~ 104 (448)
...+..||++ ++++|||+++... |+++++ .|+. .+.+.++|||..|||+ ++.. |++++.
T Consensus 3 ~W~eKyrP~~-l~dlvg~~~~~~~---l~~~l~~~~~g~~-~~~lLL~GppG~GKTtla~al-------a~el~~----- 65 (482)
T PRK04195 3 PWVEKYRPKT-LSDVVGNEKAKEQ---LREWIESWLKGKP-KKALLLYGPPGVGKTSLAHAL-------ANDYGW----- 65 (482)
T ss_pred CchhhcCCCC-HHHhcCCHHHHHH---HHHHHHHHhcCCC-CCeEEEECCCCCCHHHHHHHH-------HHHcCC-----
Confidence 3457899999 7999999999865 555555 4443 3457899999558875 4433 222221
Q ss_pred CCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 105 TKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 105 ~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
+++. +++...+ + .+.++..+..+.......|. .+.|++|||+
T Consensus 66 -~~ie--------------------lnasd~r---------~-----~~~i~~~i~~~~~~~sl~~~---~~kvIiIDEa 107 (482)
T PRK04195 66 -EVIE--------------------LNASDQR---------T-----ADVIERVAGEAATSGSLFGA---RRKLILLDEV 107 (482)
T ss_pred -CEEE--------------------Ecccccc---------c-----HHHHHHHHHHhhccCcccCC---CCeEEEEecC
Confidence 2222 1111111 0 03455444433221111110 3589999999
Q ss_pred CCCCH----HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCCh-hhhhhcccccCCCCCHHHHHHHHHHhc-
Q psy1686 185 HMLDI----ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPI-DLLDRMVIIPTQPYQDEEIQAILKIRL- 258 (448)
Q Consensus 185 H~L~~----~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~-~lLSR~~ii~~~pys~~eI~~IL~~Ra- 258 (448)
|.|+. ..++.|++.+++...|+++ .+|. ++.++. ++.+||..+.|.+++.+++..+|+..+
T Consensus 108 D~L~~~~d~~~~~aL~~~l~~~~~~iIl-i~n~------------~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~ 174 (482)
T PRK04195 108 DGIHGNEDRGGARAILELIKKAKQPIIL-TAND------------PYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICR 174 (482)
T ss_pred cccccccchhHHHHHHHHHHcCCCCEEE-eccC------------ccccchhhHhccceEEEecCCCHHHHHHHHHHHHH
Confidence 99976 6789999999976666544 4454 455655 899999999999999999999988655
Q ss_pred -----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHH
Q psy1686 259 -----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 259 -----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~ 307 (448)
+++++++.|++.+ +||+|.|++.|+.+ + .+...|+.++++.+.
T Consensus 175 ~egi~i~~eaL~~Ia~~s-~GDlR~ain~Lq~~---a--~~~~~it~~~v~~~~ 222 (482)
T PRK04195 175 KEGIECDDEALKEIAERS-GGDLRSAINDLQAI---A--EGYGKLTLEDVKTLG 222 (482)
T ss_pred HcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHH---h--cCCCCCcHHHHHHhh
Confidence 9999999999999 99999999999862 3 244579999987665
No 75
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.61 E-value=2.3e-15 Score=152.78 Aligned_cols=194 Identities=13% Similarity=0.093 Sum_probs=136.6
Q ss_pred HHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCcccceeeeeeccchhhhhh
Q psy1686 54 GVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDV 132 (448)
Q Consensus 54 ~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~ 132 (448)
.-|..++++||++| -..+.||+..||++ |.-. |+..-| ....+|++|.+|+.-+-..+.|+|.++.
T Consensus 14 ~~l~~~~~~~rl~H-A~Lf~Gp~G~GK~~lA~~l-------A~~LlC-----~~~~~~~~c~~c~~~~~g~HPD~~~i~~ 80 (319)
T PRK08769 14 DQTVAALDAGRLGH-GLLICGPEGLGKRAVALAL-------AEHVLA-----SGPDPAAAQRTRQLIAAGTHPDLQLVSF 80 (319)
T ss_pred HHHHHHHHcCCcce-eEeeECCCCCCHHHHHHHH-------HHHHhC-----CCCCCCCcchHHHHHhcCCCCCEEEEec
Confidence 45789999999998 23478887337754 3322 223332 1223566666666656666788887752
Q ss_pred hccccccchhhhcCCCCCCc-hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEE
Q psy1686 133 INSRTHGFLALFAGDTGEIT-PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSP-VVITA 210 (448)
Q Consensus 133 ~nsr~~g~~a~~~~~~~eI~-~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~Ila 210 (448)
.-.. .|- +.+.+|+ ++||+.++.. .....+| .++|++||++|+++.++.|+|+|++|||+.. +||+.
T Consensus 81 ~p~~-~~~-----k~~~~I~idqIR~l~~~~-~~~p~~g----~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~ 149 (319)
T PRK08769 81 IPNR-TGD-----KLRTEIVIEQVREISQKL-ALTPQYG----IAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLI 149 (319)
T ss_pred CCCc-ccc-----cccccccHHHHHHHHHHH-hhCcccC----CcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEE
Confidence 2111 010 0011221 6777655543 2222334 3599999999999999999999999999987 68888
Q ss_pred ecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhcCCHHHHHHHHHHcCCCCHHHHHHHHH
Q psy1686 211 TNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLMQTDGLRVLTKIALDTSLRYAIQLIT 284 (448)
Q Consensus 211 T~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Rai~deal~~La~~a~~Gd~R~AL~lLe 284 (448)
++. +..++++++|||++++|.+.+.+++.+.|....++++....++.++ +|++-.|+.+++
T Consensus 150 ~~~------------~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~~~~~~a~~~~~l~-~G~p~~A~~~~~ 210 (319)
T PRK08769 150 SAQ------------PARLPATIRSRCQRLEFKLPPAHEALAWLLAQGVSERAAQEALDAA-RGHPGLAAQWLR 210 (319)
T ss_pred ECC------------hhhCchHHHhhheEeeCCCcCHHHHHHHHHHcCCChHHHHHHHHHc-CCCHHHHHHHhc
Confidence 887 7889999999999999999999999999985447776666678888 999999988774
No 76
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.60 E-value=2.9e-15 Score=152.02 Aligned_cols=188 Identities=10% Similarity=-0.006 Sum_probs=130.6
Q ss_pred HHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCcccceeeeeeccchhhhhh
Q psy1686 54 GVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDV 132 (448)
Q Consensus 54 ~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~ 132 (448)
.-|.+++++||++|- ..|.||+..||++ |+.. |+..-| ......+|..|..|+.-+-..+.|+|.++-
T Consensus 13 ~~l~~~~~~~rl~hA-~L~~G~~G~Gk~~lA~~~-------a~~llC---~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (319)
T PRK06090 13 QNWKAGLDAGRIPGA-LLLQSDEGLGVESLVELF-------SRALLC---QNYQSEACGFCHSCELMQSGNHPDLHVIKP 81 (319)
T ss_pred HHHHHHHHcCCccee-EeeECCCCCCHHHHHHHH-------HHHHcC---CCCCCCCCCCCHHHHHHHcCCCCCEEEEec
Confidence 347889999999982 3467877347754 4433 222333 111123444444444444555788887754
Q ss_pred hccccccchhhhcCCCCCCc-hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEE
Q psy1686 133 INSRTHGFLALFAGDTGEIT-PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSP-VVITA 210 (448)
Q Consensus 133 ~nsr~~g~~a~~~~~~~eI~-~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~Ila 210 (448)
.... ..|+ ++||+.+... ......| .++|++||++|+++.++.|+|+|++||||.. +||+.
T Consensus 82 ~~~~------------~~I~vdqiR~l~~~~-~~~~~~~----~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~ 144 (319)
T PRK06090 82 EKEG------------KSITVEQIRQCNRLA-QESSQLN----GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLV 144 (319)
T ss_pred CcCC------------CcCCHHHHHHHHHHH-hhCcccC----CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 3211 1121 7888754332 2222333 3589999999999999999999999999986 78888
Q ss_pred ecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhcCCHHHHHHHHHHcCCCCHHHHHHHHH
Q psy1686 211 TNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLMQTDGLRVLTKIALDTSLRYAIQLIT 284 (448)
Q Consensus 211 T~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Rai~deal~~La~~a~~Gd~R~AL~lLe 284 (448)
|+. +..+++|++|||+.+.|.|.+.+++.+.|....++. ...+++++ +|++..|+++++
T Consensus 145 t~~------------~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~~~--~~~~l~l~-~G~p~~A~~~~~ 203 (319)
T PRK06090 145 THN------------QKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGITV--PAYALKLN-MGSPLKTLAMMK 203 (319)
T ss_pred ECC------------hhhChHHHHhcceeEeCCCCCHHHHHHHHHHcCCch--HHHHHHHc-CCCHHHHHHHhC
Confidence 887 788999999999999999999999999998554553 24567888 999999988865
No 77
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.60 E-value=5.6e-15 Score=148.08 Aligned_cols=192 Identities=13% Similarity=0.086 Sum_probs=132.7
Q ss_pred cchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcc-hhhhhhhccCccccccCCCccCCCCccccCCCcccceeeeee
Q psy1686 45 GQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQK-VKKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVH 123 (448)
Q Consensus 45 GQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKt-t~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~~ 123 (448)
+|..+ ...|.+++++||++|-+ .|+|+. ||+ +|+.. |+..-| .......+|..|..|++-+-..
T Consensus 6 ~q~~~---~~~L~~~~~~~rl~hAy-Lf~G~~--G~~~~A~~~-------A~~llC--~~~~~~~~Cg~C~~C~~i~~~~ 70 (290)
T PRK07276 6 KQPKV---FQRFQTILEQDRLNHAY-LFSGDF--ASFEMALFL-------AQSLFC--EQKEGVLPCGHCRSCRLIEQGE 70 (290)
T ss_pred HHHHH---HHHHHHHHHcCCcceee-eeeCCc--cHHHHHHHH-------HHHHcC--CCCCCCCCCCCCHHHHHHhcCC
Confidence 34444 46699999999999833 467853 553 34433 222222 1111223444444444444556
Q ss_pred ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcC
Q psy1686 124 TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEM 203 (448)
Q Consensus 124 ~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~ 203 (448)
+.|+|.++-.+.. + +. ++||+.+...- ....+| .++|++||++|+++.++.|+|+|++|||+
T Consensus 71 HPD~~~i~p~~~~---I-----~i-----dqIR~l~~~~~-~~p~~~----~~kV~II~~ad~m~~~AaNaLLKtLEEPp 132 (290)
T PRK07276 71 FSDVTVIEPQGQV---I-----KT-----DTIRELVKNFS-QSGYEG----KQQVFIIKDADKMHVNAANSLLKVIEEPQ 132 (290)
T ss_pred CCCeeeecCCCCc---C-----CH-----HHHHHHHHHHh-hCcccC----CcEEEEeehhhhcCHHHHHHHHHHhcCCC
Confidence 8888887543210 1 22 88987665542 223334 45999999999999999999999999999
Q ss_pred CC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhcCCHHHHHHHHHHcCCCCHHHHHHH
Q psy1686 204 SP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLMQTDGLRVLTKIALDTSLRYAIQL 282 (448)
Q Consensus 204 ~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Rai~deal~~La~~a~~Gd~R~AL~l 282 (448)
.. +||+.|+. +..++++++|||++++|.+ +.+++.++|....++++...+++..+ |++..|+.+
T Consensus 133 ~~t~~iL~t~~------------~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~~g~~~~~a~~la~~~--~s~~~A~~l 197 (290)
T PRK07276 133 SEIYIFLLTND------------ENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQKGLLKTQAELLAKLA--QSTSEAEKL 197 (290)
T ss_pred CCeEEEEEECC------------hhhCchHHHHcceeeeCCC-cHHHHHHHHHHcCCChHHHHHHHHHC--CCHHHHHHH
Confidence 86 78888877 7889999999999999988 88999999984447777667777776 478888888
Q ss_pred HH
Q psy1686 283 IT 284 (448)
Q Consensus 283 Le 284 (448)
++
T Consensus 198 ~~ 199 (290)
T PRK07276 198 AQ 199 (290)
T ss_pred hC
Confidence 63
No 78
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.59 E-value=1.4e-15 Score=139.85 Aligned_cols=158 Identities=20% Similarity=0.163 Sum_probs=97.2
Q ss_pred cchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCcccceeeee-
Q psy1686 45 GQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVV- 122 (448)
Q Consensus 45 GQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~- 122 (448)
||+.+. ..|.+++++|+++| ..+++||+..||++ |+.. |+..-+ +..... |+|+|..|+.+.
T Consensus 1 gq~~~~---~~L~~~~~~~~l~h-a~L~~G~~g~gk~~~a~~~-------a~~ll~---~~~~~~--~c~~c~~c~~~~~ 64 (162)
T PF13177_consen 1 GQEEII---ELLKNLIKSGRLPH-ALLFHGPSGSGKKTLALAF-------ARALLC---SNPNED--PCGECRSCRRIEE 64 (162)
T ss_dssp S-HHHH---HHHHHHHHCTC--S-EEEEECSTTSSHHHHHHHH-------HHHHC----TT-CTT----SSSHHHHHHHT
T ss_pred CcHHHH---HHHHHHHHcCCcce-eEEEECCCCCCHHHHHHHH-------HHHHcC---CCCCCC--CCCCCHHHHHHHh
Confidence 888885 55999999999998 23788998447754 3322 111111 111112 455555554443
Q ss_pred -eccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhh
Q psy1686 123 -HTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALES 201 (448)
Q Consensus 123 -~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe 201 (448)
.+.+++.++-.+.+.+ + +. +++|+.++.. .....+-.++|++|||+|.++.+++|+|+|++||
T Consensus 65 ~~~~d~~~~~~~~~~~~-i-----~i-----~~ir~i~~~~-----~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEe 128 (162)
T PF13177_consen 65 GNHPDFIIIKPDKKKKS-I-----KI-----DQIREIIEFL-----SLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEE 128 (162)
T ss_dssp T-CTTEEEEETTTSSSS-B-----SH-----HHHHHHHHHC-----TSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHS
T ss_pred ccCcceEEEecccccch-h-----hH-----HHHHHHHHHH-----HHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcC
Confidence 4677777754443211 1 11 7888555432 2222222469999999999999999999999999
Q ss_pred cCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCC
Q psy1686 202 EMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQ 246 (448)
Q Consensus 202 ~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys 246 (448)
|+.. +|||.|+. +..|+++++|||++++|+|++
T Consensus 129 pp~~~~fiL~t~~------------~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 129 PPENTYFILITNN------------PSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp TTTTEEEEEEES-------------GGGS-HHHHTTSEEEEE----
T ss_pred CCCCEEEEEEECC------------hHHChHHHHhhceEEecCCCC
Confidence 9987 78888887 788999999999999999875
No 79
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.58 E-value=1.4e-14 Score=142.25 Aligned_cols=106 Identities=25% Similarity=0.252 Sum_probs=84.2
Q ss_pred CeEEEEeccCCCC--------HHHHHHHHHhhhhcCCC-eEEEEecCceeEeecccc-CCCCCCChhhhhhc-ccccCCC
Q psy1686 176 PGVLFIDEVHMLD--------IECFSFLNRALESEMSP-VVITATNRGVTKIRGTAY-SSPHGIPIDLLDRM-VIIPTQP 244 (448)
Q Consensus 176 ~~VLfIDEVH~L~--------~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Tte-np~~~Ip~~lLSR~-~ii~~~p 244 (448)
.+||||||+|+|. .++++.|++.+|+...+ ++|+++. +++ ++.+.+++++.||| ..+.|++
T Consensus 106 ~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~--------~~~~~~~~~~~p~L~sRf~~~i~f~~ 177 (261)
T TIGR02881 106 GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGY--------SDEMDYFLSLNPGLRSRFPISIDFPD 177 (261)
T ss_pred CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCC--------cchhHHHHhcChHHHhccceEEEECC
Confidence 3799999999975 57899999999986554 3333322 233 46677899999999 5799999
Q ss_pred CCHHHHHHHHHHhc------CCHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHH
Q psy1686 245 YQDEEIQAILKIRL------MQTDGLRVLTKIA---------LDTSLRYAIQLITTASVV 289 (448)
Q Consensus 245 ys~~eI~~IL~~Ra------i~deal~~La~~a---------~~Gd~R~AL~lLe~a~~~ 289 (448)
|+.+|+.+|++..+ ++++++++|++.. ..||+|.+.|+++.|...
T Consensus 178 ~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~ 237 (261)
T TIGR02881 178 YTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRR 237 (261)
T ss_pred CCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence 99999999998654 9999999986541 258999999999998654
No 80
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.57 E-value=4.3e-14 Score=156.67 Aligned_cols=147 Identities=18% Similarity=0.248 Sum_probs=111.6
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccc-cCCCCCCChhhhhhcc--cccCCCCCHHHHHHH
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTA-YSSPHGIPIDLLDRMV--IIPTQPYQDEEIQAI 253 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Tt-enp~~~Ip~~lLSR~~--ii~~~pys~~eI~~I 253 (448)
.||+|||||+|....+++|+...+-+.. ....+++|+.++ ..-+..+.+.+.|||. .+.|+||+.+||.+|
T Consensus 871 ~IIILDEID~L~kK~QDVLYnLFR~~~~------s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dI 944 (1164)
T PTZ00112 871 SILIIDEIDYLITKTQKVLFTLFDWPTK------INSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKI 944 (1164)
T ss_pred eEEEeehHhhhCccHHHHHHHHHHHhhc------cCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHH
Confidence 6899999999987666777766663321 123345555553 2223345568889986 489999999999999
Q ss_pred HHHhc------CCHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhc-ch-hHHHHHHHHH
Q psy1686 254 LKIRL------MQTDGLRVLTKIA--LDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFL-DE-GRSTQYLREH 323 (448)
Q Consensus 254 L~~Ra------i~deal~~La~~a--~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~-D~-~~s~~~L~~~ 323 (448)
|+.|+ ++++|++++|+.+ ..||+|.||++|+.|+..+ ++..|+.++|+++..... +. .++++.|..|
T Consensus 945 Lk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEik---egskVT~eHVrkAleeiE~srI~e~IktLPlH 1021 (1164)
T PTZ00112 945 IKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENK---RGQKIVPRDITEATNQLFDSPLTNAINYLPWP 1021 (1164)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhc---CCCccCHHHHHHHHHHHHhhhHHHHHHcCCHH
Confidence 99887 8999999999943 2799999999999998753 345899999999987433 33 6788999999
Q ss_pred Hhhhhhhhc
Q psy1686 324 QNEYMFDST 332 (448)
Q Consensus 324 ~~~~l~~~~ 332 (448)
++++|+.-+
T Consensus 1022 qKLVLlALI 1030 (1164)
T PTZ00112 1022 FKMFLTCLI 1030 (1164)
T ss_pred HHHHHHHHH
Confidence 999988543
No 81
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.57 E-value=9.5e-15 Score=162.72 Aligned_cols=225 Identities=20% Similarity=0.240 Sum_probs=156.6
Q ss_pred CCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhh---ccCccccccCCCcc
Q psy1686 27 GLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTA---TGREEEPDYDGWLA 102 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~---~gk~~a~~~d~~~~ 102 (448)
|.+|.+.+||.. ++.+|||++..+. +.+++..++..+ ++++|||..|||+ ++..+. .+.+...-.+
T Consensus 169 ~~~l~~~~r~~~-l~~~igr~~ei~~---~~~~L~~~~~~n--~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~---- 238 (731)
T TIGR02639 169 TVDLTEKAKNGK-IDPLIGREDELER---TIQVLCRRKKNN--PLLVGEPGVGKTAIAEGLALRIAEGKVPENLKN---- 238 (731)
T ss_pred hhhHHHHHhcCC-CCcccCcHHHHHH---HHHHHhcCCCCc--eEEECCCCCCHHHHHHHHHHHHHhCCCchhhcC----
Confidence 668888899998 7999999999763 446666777778 6799999558876 331111 1111000000
Q ss_pred CCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCC--CCCCchHHHHHHHHHHHHHHHhCcccccCeEEE
Q psy1686 103 DVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGD--TGEITPEVREQISAKVTEWREEGKAEIVPGVLF 180 (448)
Q Consensus 103 ~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~--~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLf 180 (448)
.++. .+| +.++.+|. .+|....+++.++++.. . .+.|||
T Consensus 239 --~~~~--------------------~~~--------~~~l~a~~~~~g~~e~~l~~i~~~~~~----~-----~~~ILf 279 (731)
T TIGR02639 239 --AKIY--------------------SLD--------MGSLLAGTKYRGDFEERLKAVVSEIEK----E-----PNAILF 279 (731)
T ss_pred --CeEE--------------------Eec--------HHHHhhhccccchHHHHHHHHHHHHhc----c-----CCeEEE
Confidence 0111 122 22333332 24455566666655421 1 258999
Q ss_pred EeccCCCC---------HHHHHHHHHhhhhcCCCeEEEEecCceeEeecccc---CCCCCCChhhhhhcccccCCCCCHH
Q psy1686 181 IDEVHMLD---------IECFSFLNRALESEMSPVVITATNRGVTKIRGTAY---SSPHGIPIDLLDRMVIIPTQPYQDE 248 (448)
Q Consensus 181 IDEVH~L~---------~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Tte---np~~~Ip~~lLSR~~ii~~~pys~~ 248 (448)
|||+|+|. .++.+.|.+.++ ++.+.+|++||+ ||++.+.++|.+||..|.+++++.+
T Consensus 280 iDEih~l~~~g~~~~~~~~~~~~L~~~l~-----------~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~ 348 (731)
T TIGR02639 280 IDEIHTIVGAGATSGGSMDASNLLKPALS-----------SGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIE 348 (731)
T ss_pred EecHHHHhccCCCCCccHHHHHHHHHHHh-----------CCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHH
Confidence 99999994 457888888887 578899999996 8999999999999999999999999
Q ss_pred HHHHHHHHhc----------CCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHHhhhh----CCCcccHHHHHHHHHH
Q psy1686 249 EIQAILKIRL----------MQTDGLRVLTKIALD-----TSLRYAIQLITTASVVCRRR----KATEICMEDIRKVYAL 309 (448)
Q Consensus 249 eI~~IL~~Ra----------i~deal~~La~~a~~-----Gd~R~AL~lLe~a~~~a~~~----~~~~It~e~V~~~~~l 309 (448)
+..+||+... |+++++..++++|.. .=++.|+.+|+.|.....-. ....|+.++|..+++.
T Consensus 349 ~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~ 428 (731)
T TIGR02639 349 ETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAK 428 (731)
T ss_pred HHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHH
Confidence 9999998311 899999999999722 23889999999876532211 1345999999999875
Q ss_pred hc
Q psy1686 310 FL 311 (448)
Q Consensus 310 f~ 311 (448)
+.
T Consensus 429 ~t 430 (731)
T TIGR02639 429 MA 430 (731)
T ss_pred Hh
Confidence 43
No 82
>PRK06620 hypothetical protein; Validated
Probab=99.57 E-value=1.2e-13 Score=132.59 Aligned_cols=117 Identities=13% Similarity=0.153 Sum_probs=100.1
Q ss_pred eEEEEeccCCCC-HHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcc---cccCCCCCHHHHHH
Q psy1686 177 GVLFIDEVHMLD-IECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV---IIPTQPYQDEEIQA 252 (448)
Q Consensus 177 ~VLfIDEVH~L~-~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~---ii~~~pys~~eI~~ 252 (448)
.+|+|||||.+. ...|..+|...| ++..++|.+++++|.+.+ ++|+||+. ++.++|++.+++..
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~e-----------~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~ 154 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIINE-----------KQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKI 154 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHHh-----------cCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHH
Confidence 789999999985 467777788888 477788999999999988 89999998 99999999999999
Q ss_pred HHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHH
Q psy1686 253 ILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 253 IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~ 307 (448)
+++.++ ++++++++|++.+ +||+|.++++|+.....+.. .++.||.+.+++++
T Consensus 155 ~l~k~~~~~~l~l~~ev~~~L~~~~-~~d~r~l~~~l~~l~~~~~~-~~~~it~~~~~~~l 213 (214)
T PRK06620 155 LIFKHFSISSVTISRQIIDFLLVNL-PREYSKIIEILENINYFALI-SKRKITISLVKEVL 213 (214)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHH-cCCCCCHHHHHHHh
Confidence 988554 9999999999999 99999999999987544433 33569999999875
No 83
>PRK06893 DNA replication initiation factor; Validated
Probab=99.57 E-value=7.3e-14 Score=134.93 Aligned_cols=209 Identities=12% Similarity=0.129 Sum_probs=132.2
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
|+|+-..+|...|++||||.+...+....+.+. . ..+|++.++||+..|||. +....+ ++-. -+....
T Consensus 3 l~l~~~~~~~~~fd~f~~~~~~~~~~~~~~~~~-~--~~~~~l~l~G~~G~GKThL~~ai~~-------~~~~-~~~~~~ 71 (229)
T PRK06893 3 LPLPIHQIDDETLDNFYADNNLLLLDSLRKNFI-D--LQQPFFYIWGGKSSGKSHLLKAVSN-------HYLL-NQRTAI 71 (229)
T ss_pred cccCCCCCCcccccccccCChHHHHHHHHHHhh-c--cCCCeEEEECCCCCCHHHHHHHHHH-------HHHH-cCCCeE
Confidence 677777787777999999998876655555442 2 345878899998548874 331111 0000 001123
Q ss_pred ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 107 DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
|++ +.+.+. + ..++ + ..+ . ...+|||||+|.
T Consensus 72 y~~-----------------~~~~~~-------~-----------~~~~---~----~~~---~----~~dlLilDDi~~ 102 (229)
T PRK06893 72 YIP-----------------LSKSQY-------F-----------SPAV---L----ENL---E----QQDLVCLDDLQA 102 (229)
T ss_pred Eee-----------------HHHhhh-------h-----------hHHH---H----hhc---c----cCCEEEEeChhh
Confidence 444 111000 0 0111 1 111 1 237999999999
Q ss_pred CCH------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCC-CChhhhhhcc---cccCCCCCHHHHHHHHHH
Q psy1686 187 LDI------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHG-IPIDLLDRMV---IIPTQPYQDEEIQAILKI 256 (448)
Q Consensus 187 L~~------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~-Ip~~lLSR~~---ii~~~pys~~eI~~IL~~ 256 (448)
+.. ..|+.+++..+. -.++++++++ +..+... ..+++.||+. ++++++++.++..+||+.
T Consensus 103 ~~~~~~~~~~l~~l~n~~~~~-~~~illits~---------~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 103 VIGNEEWELAIFDLFNRIKEQ-GKTLLLISAD---------CSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred hcCChHHHHHHHHHHHHHHHc-CCcEEEEeCC---------CChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 842 345666666653 1222222222 2111111 2379999996 999999999999999996
Q ss_pred hc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 257 RL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 257 Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++ ++++++++|++.+ +||+|.++++|+.....+. ..++.||.+.|++++.
T Consensus 173 ~a~~~~l~l~~~v~~~L~~~~-~~d~r~l~~~l~~l~~~~~-~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 173 NAYQRGIELSDEVANFLLKRL-DRDMHTLFDALDLLDKASL-QAQRKLTIPFVKEILG 228 (229)
T ss_pred HHHHcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHH-hcCCCCCHHHHHHHhc
Confidence 66 9999999999999 9999999999998743332 2234799999998764
No 84
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.56 E-value=9.3e-14 Score=142.72 Aligned_cols=146 Identities=21% Similarity=0.221 Sum_probs=111.8
Q ss_pred CeEEEEeccCCCC----HHHHHHHHHhhhhcCC-C-eEEEEecCceeEeeccccCCCCCCChhhhhhc--ccccCCCCCH
Q psy1686 176 PGVLFIDEVHMLD----IECFSFLNRALESEMS-P-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRM--VIIPTQPYQD 247 (448)
Q Consensus 176 ~~VLfIDEVH~L~----~~~f~~Llk~lEe~~~-p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~--~ii~~~pys~ 247 (448)
+.|++|||+|.|. .+.++.|.+.+++... + .+|+.++. .+....+.+.+.||+ ..+.|.||+.
T Consensus 139 ~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~---------~~~~~~l~~~~~s~~~~~~i~f~py~~ 209 (394)
T PRK00411 139 VLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSD---------LTFLYILDPRVKSVFRPEEIYFPPYTA 209 (394)
T ss_pred EEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECC---------cchhhhcCHHHHhcCCcceeecCCCCH
Confidence 5789999999996 5678888888776543 3 24444443 111223556677776 4789999999
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhcc--hhH
Q psy1686 248 EEIQAILKIRL--------MQTDGLRVLTKIAL--DTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLD--EGR 315 (448)
Q Consensus 248 ~eI~~IL~~Ra--------i~deal~~La~~a~--~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~D--~~~ 315 (448)
+++.+||+.|+ +++++++++++.+. .||+|+|+++|..|...|..++...|+.++|+++...... ...
T Consensus 210 ~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~~~~~~ 289 (394)
T PRK00411 210 DEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEIVHLSE 289 (394)
T ss_pred HHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999775 89999999998852 5899999999999988887677778999999999975422 256
Q ss_pred HHHHHHHHHhhhhhh
Q psy1686 316 STQYLREHQNEYMFD 330 (448)
Q Consensus 316 s~~~L~~~~~~~l~~ 330 (448)
.++.|..+++.+|.-
T Consensus 290 ~~~~L~~~~k~~L~a 304 (394)
T PRK00411 290 VLRTLPLHEKLLLRA 304 (394)
T ss_pred HHhcCCHHHHHHHHH
Confidence 678888888888764
No 85
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.54 E-value=2.5e-13 Score=137.98 Aligned_cols=146 Identities=20% Similarity=0.216 Sum_probs=106.1
Q ss_pred CeEEEEeccCCCC---HHHHHHHHHhh--hhcC-CC-eEEEEecCceeEeeccccCCCCCCChhhhhhcc--cccCCCCC
Q psy1686 176 PGVLFIDEVHMLD---IECFSFLNRAL--ESEM-SP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV--IIPTQPYQ 246 (448)
Q Consensus 176 ~~VLfIDEVH~L~---~~~f~~Llk~l--Ee~~-~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~--ii~~~pys 246 (448)
+.|++|||+|.|. .+.++.|.+.. ++.+ .+ .+|+++|.- ...-.+.+.+.||+. .+.|+||+
T Consensus 130 ~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~---------~~~~~l~~~~~s~~~~~~i~f~p~~ 200 (365)
T TIGR02928 130 SLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDL---------KFRENLDPRVKSSLCEEEIIFPPYD 200 (365)
T ss_pred eEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCc---------chHhhcCHHHhccCCcceeeeCCCC
Confidence 5789999999994 34466677763 3322 22 444445430 001136677888884 78999999
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhc-c-hh
Q psy1686 247 DEEIQAILKIRL--------MQTDGLRVLTKIAL--DTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFL-D-EG 314 (448)
Q Consensus 247 ~~eI~~IL~~Ra--------i~deal~~La~~a~--~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~-D-~~ 314 (448)
.+|+.+||+.|+ +++++++++++++. .||+|.|+++++.|...|..++...|+.++|+++..... + ..
T Consensus 201 ~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~~~~~ 280 (365)
T TIGR02928 201 AEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEKDRLL 280 (365)
T ss_pred HHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999775 78999998887652 699999999999999888766777899999999887532 2 24
Q ss_pred HHHHHHHHHHhhhhhh
Q psy1686 315 RSTQYLREHQNEYMFD 330 (448)
Q Consensus 315 ~s~~~L~~~~~~~l~~ 330 (448)
.+++.|..|++.+|.-
T Consensus 281 ~~i~~l~~~~~~~l~a 296 (365)
T TIGR02928 281 ELIRGLPTHSKLVLLA 296 (365)
T ss_pred HHHHcCCHHHHHHHHH
Confidence 5677777777766553
No 86
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.54 E-value=5.9e-14 Score=153.55 Aligned_cols=247 Identities=12% Similarity=0.084 Sum_probs=137.7
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCC---CCcccccCCCCCcch-hhhhhhccCccccccCCCccC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMV---WPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLAD 103 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~g---pf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~ 103 (448)
.++.+++||+. +++++||++..+. ++.+++...+.+ -+++++||+..|||| +++.++. ++. +
T Consensus 72 ~pW~eKyrP~~-ldel~~~~~ki~~---l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~-------l~~---~ 137 (637)
T TIGR00602 72 EPWVEKYKPET-QHELAVHKKKIEE---VETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE-------LGI---Q 137 (637)
T ss_pred CchHHHhCCCC-HHHhcCcHHHHHH---HHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH-------hhh---H
Confidence 46889999999 7999999999875 677777655443 457899998558876 5544221 110 0
Q ss_pred CCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCc-ccccCeEEEEe
Q psy1686 104 VTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGK-AEIVPGVLFID 182 (448)
Q Consensus 104 ~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~-~~i~~~VLfID 182 (448)
..++.. |-+... .-+.| .+..+....+....++. ++.++.+..+-......|. ..-.+.|+|||
T Consensus 138 ~~Ew~n-pv~~~~-------~~~~~--~~~~s~~~~~~~~~s~~-----~~F~~fl~~a~~~~~~~g~~~~~~~~IILID 202 (637)
T TIGR00602 138 VQEWSN-PTLPDF-------QKNDH--KVTLSLESCFSNFQSQI-----EVFSEFLLRATNKLQMLGDDLMTDKKIILVE 202 (637)
T ss_pred HHHHhh-hhhhcc-------ccccc--ccchhhhhccccccchH-----HHHHHHHHHHHhhhcccccccCCceeEEEee
Confidence 001100 000000 00000 00011111133333333 5666666554321101110 01135899999
Q ss_pred cc----CCCCHHHHHHHH-HhhhhcCCCeEEEEecCceeEeecccc-CCCCC----CChhhhh--hcccccCCCCCHHHH
Q psy1686 183 EV----HMLDIECFSFLN-RALESEMSPVVITATNRGVTKIRGTAY-SSPHG----IPIDLLD--RMVIIPTQPYQDEEI 250 (448)
Q Consensus 183 EV----H~L~~~~f~~Ll-k~lEe~~~pi~IlaT~~~i~lI~~Tte-np~~~----Ip~~lLS--R~~ii~~~pys~~eI 250 (448)
|+ |+.+...++.|. ...+....| +|+++++. .-+..+. .-.|. +++++++ ||.+|.|+||+..+|
T Consensus 203 EiPn~~~r~~~~lq~lLr~~~~e~~~~p-LI~I~TE~--~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l 279 (637)
T TIGR00602 203 DLPNQFYRDTRALHEILRWKYVSIGRCP-LVFIITES--LEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIM 279 (637)
T ss_pred cchhhchhhHHHHHHHHHHHhhcCCCce-EEEEecCC--ccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHH
Confidence 99 876554444444 355544334 33333321 0000000 00144 5689999 556799999999996
Q ss_pred HHHHH----Hhc--------C-CHHHHHHHHHHcCCCCHHHHHHHHHHHHH----HhhhhCCCcccHHHHHHHH
Q psy1686 251 QAILK----IRL--------M-QTDGLRVLTKIALDTSLRYAIQLITTASV----VCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 251 ~~IL~----~Ra--------i-~deal~~La~~a~~Gd~R~AL~lLe~a~~----~a~~~~~~~It~e~V~~~~ 307 (448)
.+.|+ .++ + ++++++.|+..+ +||+|.||+.|+.++. .+...+...++..++++..
T Consensus 280 ~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s-~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~ 352 (637)
T TIGR00602 280 KKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGC-SGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSK 352 (637)
T ss_pred HHHHHHHHHhhhhccccccccCCHHHHHHHHHhC-CChHHHHHHHHHHHHhcCCccccccccccccHHHhhhcc
Confidence 55555 332 1 468999999988 9999999999998743 2322344568878877664
No 87
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.51 E-value=5e-14 Score=144.25 Aligned_cols=194 Identities=13% Similarity=0.024 Sum_probs=124.3
Q ss_pred cCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCcccceeeeeeccchhhhhhhcc-cccc
Q psy1686 62 EEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINS-RTHG 139 (448)
Q Consensus 62 ~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~ns-r~~g 139 (448)
.||++| -..|.||+..||++ |+.. |+.+.|. ++.....||..|..|++-+-..+.++|.+.-... ...|
T Consensus 17 ~~rl~h-a~Lf~Gp~G~GK~~lA~~~-------A~~LlC~-~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~ 87 (342)
T PRK06964 17 RARLPH-ALLLHGQAGIGKLDFAQHL-------AQGLLCE-TPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAP 87 (342)
T ss_pred cCCcce-EEEEECCCCCCHHHHHHHH-------HHHHcCC-CCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccccccc
Confidence 578887 23478987337754 4433 2333331 0011123444444444444455788887732110 0000
Q ss_pred chh------h--hcCCC-----CCCc-hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCC
Q psy1686 140 FLA------L--FAGDT-----GEIT-PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSP 205 (448)
Q Consensus 140 ~~a------~--~~~~~-----~eI~-~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p 205 (448)
.++ . ..|.+ ..|+ ++||+.+... .....+| .++|++||++|+++.++.|+|+|++|||+..
T Consensus 88 ~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~-~~~~~~~----~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~ 162 (342)
T PRK06964 88 GAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFC-GVGTHRG----GARVVVLYPAEALNVAAANALLKTLEEPPPG 162 (342)
T ss_pred ccccccccchhhcccccccccccccCHHHHHHHHHHh-ccCCccC----CceEEEEechhhcCHHHHHHHHHHhcCCCcC
Confidence 000 0 01110 1221 7888755433 2222233 4689999999999999999999999999987
Q ss_pred -eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhcCCHHHHHHHHHHcCCCCHHHHHHHHH
Q psy1686 206 -VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLMQTDGLRVLTKIALDTSLRYAIQLIT 284 (448)
Q Consensus 206 -i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Rai~deal~~La~~a~~Gd~R~AL~lLe 284 (448)
+||+.|+. +..++++++|||+.++|.|.+.+++.+.|..+.+++. +.++..+ +|++..|+.+++
T Consensus 163 t~fiL~t~~------------~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~~~~~--~~~l~~~-~Gsp~~Al~~~~ 227 (342)
T PRK06964 163 TVFLLVSAR------------IDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQGVADA--DALLAEA-GGAPLAALALAS 227 (342)
T ss_pred cEEEEEECC------------hhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcCCChH--HHHHHHc-CCCHHHHHHHHC
Confidence 78888887 8889999999999999999999999999985555543 2346777 899999988764
No 88
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.51 E-value=8.1e-14 Score=157.48 Aligned_cols=221 Identities=19% Similarity=0.217 Sum_probs=148.0
Q ss_pred CCCCCCCCCccccccccccchhhhhhhHHHHHHHh---cCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCcc
Q psy1686 27 GLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIK---EEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLA 102 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~---~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~ 102 (448)
|.+|.+.+||.. ++.+|||++. |+++|+ .++..+ .+++|+|..|||+ ++..+. .+..
T Consensus 174 ~~~L~~~~r~~~-ld~~iGr~~e------i~~~i~~l~r~~~~n--~lLvG~pGvGKTal~~~La~-------~i~~--- 234 (852)
T TIGR03345 174 TTDLTAQAREGK-IDPVLGRDDE------IRQMIDILLRRRQNN--PILTGEAGVGKTAVVEGLAL-------RIAA--- 234 (852)
T ss_pred hhhHHHHhcCCC-CCcccCCHHH------HHHHHHHHhcCCcCc--eeEECCCCCCHHHHHHHHHH-------HHhh---
Confidence 467888899998 7999999997 566664 667778 5699999548876 332111 0000
Q ss_pred CCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcC--CCCCCchHHHHHHHHHHHHHHHhCcccccCeEEE
Q psy1686 103 DVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAG--DTGEITPEVREQISAKVTEWREEGKAEIVPGVLF 180 (448)
Q Consensus 103 ~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~--~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLf 180 (448)
..+| ...+...+..+|+. ++.+| ..+|....+|+.++++. ..+ .+.|||
T Consensus 235 ---~~v~----------~~l~~~~i~~l~l~--------~l~ag~~~~ge~e~~lk~ii~e~~----~~~----~~~ILf 285 (852)
T TIGR03345 235 ---GDVP----------PALRNVRLLSLDLG--------LLQAGASVKGEFENRLKSVIDEVK----ASP----QPIILF 285 (852)
T ss_pred ---CCCC----------ccccCCeEEEeehh--------hhhcccccchHHHHHHHHHHHHHH----hcC----CCeEEE
Confidence 0111 00111222223332 22222 34555567777776552 122 358999
Q ss_pred EeccCCCCH-----HHH---HHHHHhhhhcCCCeEEEEecCceeEeecccc---CCCCCCChhhhhhcccccCCCCCHHH
Q psy1686 181 IDEVHMLDI-----ECF---SFLNRALESEMSPVVITATNRGVTKIRGTAY---SSPHGIPIDLLDRMVIIPTQPYQDEE 249 (448)
Q Consensus 181 IDEVH~L~~-----~~f---~~Llk~lEe~~~pi~IlaT~~~i~lI~~Tte---np~~~Ip~~lLSR~~ii~~~pys~~e 249 (448)
|||+|+|.. .++ ++|.++++ ++.+.+|++||+ +|++.+.++|++||++|.+++.+.++
T Consensus 286 IDEih~l~~~g~~~~~~d~~n~Lkp~l~-----------~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~ 354 (852)
T TIGR03345 286 IDEAHTLIGAGGQAGQGDAANLLKPALA-----------RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEET 354 (852)
T ss_pred EeChHHhccCCCccccccHHHHhhHHhh-----------CCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHH
Confidence 999999963 333 46777777 588999999996 79999999999999999999999999
Q ss_pred HHHHHHH---hc-------CCHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHhh-hhCCCcccHHHHHHH
Q psy1686 250 IQAILKI---RL-------MQTDGLRVLTKIAL-----DTSLRYAIQLITTASVVCR-RRKATEICMEDIRKV 306 (448)
Q Consensus 250 I~~IL~~---Ra-------i~deal~~La~~a~-----~Gd~R~AL~lLe~a~~~a~-~~~~~~It~e~V~~~ 306 (448)
..+||+. +. |+|+|+..++++|. ..=+-+|+.+|+.|+.... ......++.+++++-
T Consensus 355 ~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~ 427 (852)
T TIGR03345 355 AIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRR 427 (852)
T ss_pred HHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence 9999642 11 89999999999982 2246789999999865432 223344555555443
No 89
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.49 E-value=6.5e-14 Score=138.92 Aligned_cols=202 Identities=19% Similarity=0.162 Sum_probs=135.3
Q ss_pred cccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCC-CccccCCCcccce
Q psy1686 41 QGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVT-KDLRCPDGELQKR 118 (448)
Q Consensus 41 ~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~-~fv~~p~ge~~k~ 118 (448)
++++|++++... .+......+++++ ...++|||..|||+ |.-. |+++-| +.. ...+|.++..|+.
T Consensus 1 ~~~~~~~~~~~~--l~~~~~~~~~~~h-alL~~Gp~G~Gktt~a~~l-------A~~l~~---~~~~~~~~~~~~~~~~~ 67 (325)
T COG0470 1 DELVPWQEAVKR--LLVQALESGRLPH-ALLFYGPPGVGKTTAALAL-------AKELLC---ENPTGLLPCGHCRSCKL 67 (325)
T ss_pred CCcccchhHHHH--HHHHHHhcCCCCc-eeeeeCCCCCCHHHHHHHH-------HHHHhC---CCcccCCcccchhhhhH
Confidence 357888888754 2334444777766 35689998558865 3322 222222 111 1122222234444
Q ss_pred eeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHh
Q psy1686 119 KTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRA 198 (448)
Q Consensus 119 kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~ 198 (448)
-....+-++||+.....+..+ -+.+.||+..... . ....+-.++|++|||++.++.+++|+|+|+
T Consensus 68 ~~~~~~~d~lel~~s~~~~~~----------i~~~~vr~~~~~~----~-~~~~~~~~kviiidead~mt~~A~nallk~ 132 (325)
T COG0470 68 IPAGNHPDFLELNPSDLRKID----------IIVEQVRELAEFL----S-ESPLEGGYKVVIIDEADKLTEDAANALLKT 132 (325)
T ss_pred HhhcCCCceEEecccccCCCc----------chHHHHHHHHHHh----c-cCCCCCCceEEEeCcHHHHhHHHHHHHHHH
Confidence 444456788888877776322 1114455433322 1 111122469999999999999999999999
Q ss_pred hhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhcCCHHHHHHHHHHcCCCCHH
Q psy1686 199 LESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLMQTDGLRVLTKIALDTSLR 277 (448)
Q Consensus 199 lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Rai~deal~~La~~a~~Gd~R 277 (448)
+|+|+.. .||+.||. +.+|.+++.|||++++|+| ...+..|.. .+++++..++..+ .||+|
T Consensus 133 lEep~~~~~~il~~n~------------~~~il~tI~SRc~~i~f~~--~~~~~~i~~---~e~~~l~~i~~~~-~gd~r 194 (325)
T COG0470 133 LEEPPKNTRFILITND------------PSKILPTIRSRCQRIRFKP--PSRLEAIAW---LEDQGLEEIAAVA-EGDAR 194 (325)
T ss_pred hccCCCCeEEEEEcCC------------hhhccchhhhcceeeecCC--chHHHHHHH---hhccchhHHHHHH-HHHHH
Confidence 9999876 77788886 7889999999999999999 445555555 5578899999999 99999
Q ss_pred HHHHHHHHHHH
Q psy1686 278 YAIQLITTASV 288 (448)
Q Consensus 278 ~AL~lLe~a~~ 288 (448)
.|+|.|+.+..
T Consensus 195 ~~i~~lq~~~~ 205 (325)
T COG0470 195 KAINPLQALAA 205 (325)
T ss_pred cCCCHHHHHHH
Confidence 99999997754
No 90
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=99.49 E-value=9e-14 Score=132.05 Aligned_cols=116 Identities=15% Similarity=0.168 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCCh
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPI 231 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~ 231 (448)
+++|+.++.+-.. .. .+.++||++|+|+.+++|+|+|++||||.+ +||++|+. +..+++
T Consensus 40 d~iReii~~~~~~---~~-----~~k~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~------------~~~llp 99 (206)
T PRK08485 40 EDAKEVIAEAYIA---ES-----EEKIIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKS------------KNLLLP 99 (206)
T ss_pred HHHHHHHHHHhhC---CC-----CcEEEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCC------------hHhCch
Confidence 8899988765321 11 133568999999999999999999999987 88888887 888999
Q ss_pred hhhhhccc-------------ccCCCCCHHHHHHHHHHhc-----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy1686 232 DLLDRMVI-------------IPTQPYQDEEIQAILKIRL-----MQTDGLRVLTKIALDTSLRYAIQLITTASVV 289 (448)
Q Consensus 232 ~lLSR~~i-------------i~~~pys~~eI~~IL~~Ra-----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~ 289 (448)
+++|||++ +.|++++.++|.+.|+... .+++++++|++++ .|++|+|+++.+++..+
T Consensus 100 TI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~~~ke~~~~~~ea~~lIa~la-~~s~r~~l~l~~q~l~~ 174 (206)
T PRK08485 100 TIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKELEKENKLSKEELKELIESLL-KECVKYKIPLNEEELEY 174 (206)
T ss_pred HHHhhheeccccccccccccccccCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHH-HHHHHHHcCccHHHHHH
Confidence 99999987 7799999999999996421 7888999999999 99999999999988654
No 91
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=6.5e-13 Score=133.14 Aligned_cols=166 Identities=13% Similarity=0.119 Sum_probs=111.0
Q ss_pred HHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCC-Ccccceeeeeeccchhhhh
Q psy1686 54 GVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPD-GELQKRKTVVHTVTLHEID 131 (448)
Q Consensus 54 ~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~-ge~~k~kei~~~vtLheiD 131 (448)
.-|.+++++||++|- ..|.||+..||++ |.-. |+. .-|+. ...|++-.-..+.|+|.+.
T Consensus 7 ~~L~~~i~~~rl~HA-yLf~G~~G~Gk~~lA~~~-------A~~-----------llC~~~~~~c~~~~~~~HPD~~~i~ 67 (290)
T PRK05917 7 EALIQRVRDQKVPSA-IILHGQDLSNLSARAYEL-------ASL-----------ILKETSPEAAYKISQKIHPDIHEFS 67 (290)
T ss_pred HHHHHHHHcCCcCee-EeeECCCCCcHHHHHHHH-------HHH-----------HhCCCCccHHHHHhcCCCCCEEEEe
Confidence 458899999999982 2477887446643 3211 111 22211 1122222333466666653
Q ss_pred hhcc-ccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEE
Q psy1686 132 VINS-RTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSP-VVIT 209 (448)
Q Consensus 132 ~~ns-r~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~Il 209 (448)
-... +. + +. +++|+.+.+. .....+| .++|++||++|+++.+++|+|+|++||||.. +||+
T Consensus 68 p~~~~~~--I-----~i-----dqiR~l~~~~-~~~p~e~----~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL 130 (290)
T PRK05917 68 PQGKGRL--H-----SI-----ETPRAIKKQI-WIHPYES----PYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIIL 130 (290)
T ss_pred cCCCCCc--C-----cH-----HHHHHHHHHH-hhCccCC----CceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEE
Confidence 2211 00 0 12 7788655443 2323334 4699999999999999999999999999987 7788
Q ss_pred EecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhcCCHHHHHHHHHHcCCCCHH
Q psy1686 210 ATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLMQTDGLRVLTKIALDTSLR 277 (448)
Q Consensus 210 aT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Rai~deal~~La~~a~~Gd~R 277 (448)
.|+. +..++++++|||++++|.|+... .++++....++..+ +|++.
T Consensus 131 ~~~~------------~~~ll~TI~SRcq~~~~~~~~~~---------~i~~~~~~~l~~~~-~g~~~ 176 (290)
T PRK05917 131 TSAK------------PQRLPPTIRSRSLSIHIPMEEKT---------LVSKEDIAYLIGYA-QGKES 176 (290)
T ss_pred EeCC------------hhhCcHHHHhcceEEEccchhcc---------CCCHHHHHHHHHHh-CCChh
Confidence 8887 88899999999999999997221 27888888899998 89885
No 92
>PRK08727 hypothetical protein; Validated
Probab=99.42 E-value=1.1e-11 Score=120.12 Aligned_cols=117 Identities=17% Similarity=0.226 Sum_probs=89.0
Q ss_pred eEEEEeccCCCC--H----HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCC---CCChhhhhh---cccccCCC
Q psy1686 177 GVLFIDEVHMLD--I----ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPH---GIPIDLLDR---MVIIPTQP 244 (448)
Q Consensus 177 ~VLfIDEVH~L~--~----~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~---~Ip~~lLSR---~~ii~~~p 244 (448)
.+|+|||+|++. . ..|+.++...+. ...+|++++. ||- .+.++|.|| |+++.|+|
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~--~~~vI~ts~~-----------~p~~l~~~~~dL~SRl~~~~~~~l~~ 161 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAA--GITLLYTARQ-----------MPDGLALVLPDLRSRLAQCIRIGLPV 161 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHc--CCeEEEECCC-----------ChhhhhhhhHHHHHHHhcCceEEecC
Confidence 789999999995 2 234444444442 1234444443 233 346999999 88999999
Q ss_pred CCHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 245 YQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 245 ys~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++.+++.+||+.+| ++++++++|++.+ +||+|.++++|+.+...+... ++.||.+.+++++.
T Consensus 162 ~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~-~rd~r~~l~~L~~l~~~~~~~-~~~it~~~~~~~l~ 229 (233)
T PRK08727 162 LDDVARAAVLRERAQRRGLALDEAAIDWLLTHG-ERELAGLVALLDRLDRESLAA-KRRVTVPFLRRVLE 229 (233)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHh
Confidence 99999999999766 9999999999999 999999999999876444323 34799999998875
No 93
>PRK05642 DNA replication initiation factor; Validated
Probab=99.42 E-value=5.9e-12 Score=122.23 Aligned_cols=119 Identities=12% Similarity=0.203 Sum_probs=95.3
Q ss_pred eEEEEeccCCCCH------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCC-Chhhhhhc---ccccCCCCC
Q psy1686 177 GVLFIDEVHMLDI------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGI-PIDLLDRM---VIIPTQPYQ 246 (448)
Q Consensus 177 ~VLfIDEVH~L~~------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~I-p~~lLSR~---~ii~~~pys 246 (448)
.+|+||++|.+.. +-|+.++...| ++..+++.+++.+|.+.. .++|.||+ +++.++|++
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~-----------~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~ 167 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRD-----------SGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLS 167 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHh-----------cCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCC
Confidence 6899999999842 24566666665 355667777776666665 69999999 899999999
Q ss_pred HHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 247 DEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 247 ~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
.++...+++.++ ++++++++|++.+ ++|+|.++++|+.....+. ..++.||..-+++++.
T Consensus 168 ~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~-~~d~r~l~~~l~~l~~~~l-~~~~~it~~~~~~~L~ 233 (234)
T PRK05642 168 DEDKLRALQLRASRRGLHLTDEVGHFILTRG-TRSMSALFDLLERLDQASL-QAQRKLTIPFLKETLG 233 (234)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHH-HcCCcCCHHHHHHHhc
Confidence 999999999666 9999999999999 9999999999998864443 2345799999998764
No 94
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=1.2e-12 Score=129.30 Aligned_cols=141 Identities=15% Similarity=0.010 Sum_probs=103.0
Q ss_pred CCCccccee--eeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCC
Q psy1686 111 PDGELQKRK--TVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLD 188 (448)
Q Consensus 111 p~ge~~k~k--ei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~ 188 (448)
|||.|..|+ .-..+.|+|.+.-... + + +. +++|+.+...-..-.+.| .++|++||++++++
T Consensus 39 ~Cg~C~sC~~i~~~~HPDl~~i~p~~~-~--I-----~i-----d~ir~l~~~l~~~s~e~~----~~KV~II~~ae~m~ 101 (261)
T PRK05818 39 FCKTCESCLKILNGKYNDFYLIFDQKN-P--I-----KK-----EDALSIINKLNRPSVESN----GKKIYIIYGIEKLN 101 (261)
T ss_pred CCCCCHHHHHHhcCCCCCEEEecCCcc-c--C-----CH-----HHHHHHHHHHccCchhcC----CCEEEEeccHhhhC
Confidence 455555444 4455888887632221 1 1 22 788876654321111222 25999999999999
Q ss_pred HHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCC----------CHHHHHHHHHHh
Q psy1686 189 IECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPY----------QDEEIQAILKIR 257 (448)
Q Consensus 189 ~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~py----------s~~eI~~IL~~R 257 (448)
.++.|+|+|++||||.. +||+.|+. +..++++++|||+++.|.++ ++.++.+.|..+
T Consensus 102 ~~AaNaLLK~LEEPp~~t~fiLit~~------------~~~lLpTI~SRCq~~~~~~~~~~~~~~~~~~~~~i~~~L~~~ 169 (261)
T PRK05818 102 KQSANSLLKLIEEPPKNTYGIFTTRN------------ENNILNTILSRCVQYVVLSKEKKVPFKVESNDRYFQYILLSF 169 (261)
T ss_pred HHHHHHHHHhhcCCCCCeEEEEEECC------------hHhCchHhhhheeeeecCChhhhcccccccChHHHHHHHHHc
Confidence 99999999999999987 77788877 78899999999999999998 777777777644
Q ss_pred c-CCHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy1686 258 L-MQTDGLRVLTKIALDTSLRYAIQLITT 285 (448)
Q Consensus 258 a-i~deal~~La~~a~~Gd~R~AL~lLe~ 285 (448)
. +++ .++..+ +|+...|+.+++.
T Consensus 170 ~~~d~----~i~~~a-~g~~~~a~~l~~~ 193 (261)
T PRK05818 170 YSVDE----QLQAYN-NGSFSKLKNIIET 193 (261)
T ss_pred cCccH----HHHHHc-CCCHHHHHHHHHH
Confidence 3 544 566778 9999999999994
No 95
>KOG0990|consensus
Probab=99.34 E-value=1.8e-11 Score=123.19 Aligned_cols=228 Identities=14% Similarity=0.077 Sum_probs=155.2
Q ss_pred ccCccCCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcchhhhhhhccCccccccCCCc
Q psy1686 22 HSHIRGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKVKKISTATGREEEPDYDGWL 101 (448)
Q Consensus 22 hsHi~glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt~~I~~~~gk~~a~~~d~~~ 101 (448)
-|-..-+|.-+..||.. +.++|||+... ..+.+.+..++++| +.++|||..|||++ .+.+ |+++
T Consensus 23 ~~~~~~~pwvekyrP~~-l~dv~~~~ei~---st~~~~~~~~~lPh--~L~YgPPGtGktst-----i~a~-a~~l---- 86 (360)
T KOG0990|consen 23 QSPQYPQPWVEKYRPPF-LGIVIKQEPIW---STENRYSGMPGLPH--LLFYGPPGTGKTST-----ILAN-ARDF---- 86 (360)
T ss_pred CCcccCCCCccCCCCch-hhhHhcCCchh---hHHHHhccCCCCCc--ccccCCCCCCCCCc-----hhhh-hhhh----
Confidence 34456788889999998 79999999996 55788888888888 67999985466521 1111 2222
Q ss_pred cCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHH-HHhCcccccCeEEE
Q psy1686 102 ADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEW-REEGKAEIVPGVLF 180 (448)
Q Consensus 102 ~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~-~~~g~~~i~~~VLf 180 (448)
.||.+- |++ +..+.+++...| +=+|++|..-..-+ +.-.....-++.++
T Consensus 87 -------y~~~~~-------------------~~m---~lelnaSd~rgi-d~vr~qi~~fast~~~~~fst~~~fKlvI 136 (360)
T KOG0990|consen 87 -------YSPHPT-------------------TSM---LLELNASDDRGI-DPVRQQIHLFASTQQPTTYSTHAAFKLVI 136 (360)
T ss_pred -------cCCCCc-------------------hhH---HHHhhccCccCC-cchHHHHHHHHhhccceeccccCceeEEE
Confidence 222110 111 333444444444 66777776432111 00001112368999
Q ss_pred EeccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-
Q psy1686 181 IDEVHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL- 258 (448)
Q Consensus 181 IDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra- 258 (448)
+||.+..+.++||+|-|..|.+-.. .|+ +--|++.++-++++|||.-|+|.|++..++..++...+
T Consensus 137 LDEADaMT~~AQnALRRviek~t~n~rF~------------ii~n~~~ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e 204 (360)
T KOG0990|consen 137 LDEADAMTRDAQNALRRVIEKYTANTRFA------------TISNPPQKIHPAQQSRCTRFRFAPLTMAQQTERQSHIRE 204 (360)
T ss_pred ecchhHhhHHHHHHHHHHHHHhccceEEE------------EeccChhhcCchhhcccccCCCCCCChhhhhhHHHHHHh
Confidence 9999999999999999999976433 222 33477999999999999999999999999888887655
Q ss_pred -----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+++++...+++.+ .||+|.|+|.|......-.......+..+.|....+
T Consensus 205 ~e~~~~~~~~~~a~~r~s-~gDmr~a~n~Lqs~~~~~~~~~e~~~~~~~vy~c~g 258 (360)
T KOG0990|consen 205 SEQKETNPEGYSALGRLS-VGDMRVALNYLQSILKKVMERKELNNPNDLVYQCKG 258 (360)
T ss_pred cchhhcCHHHHHHHHHHh-HHHHHHHHHHHHHHHHHhCCCCCCCCchhhHHHhcC
Confidence 8999999999999 999999999999775432111122345555555443
No 96
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.32 E-value=5.3e-12 Score=128.58 Aligned_cols=180 Identities=15% Similarity=0.080 Sum_probs=115.1
Q ss_pred cCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCcccceeee--eeccchhhhhhhccc-c
Q psy1686 62 EEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTV--VHTVTLHEIDVINSR-T 137 (448)
Q Consensus 62 ~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei--~~~vtLheiD~~nsr-~ 137 (448)
.+|++| -..|+||+..||++ |+..++. ..|. .+..... |||+|..|+.+ ..+.++|+++..... .
T Consensus 17 ~~r~~h-A~Lf~G~~G~GK~~la~~~a~~-------llC~-~~~~~~~--~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~ 85 (325)
T PRK08699 17 WERRPN-AWLFAGKKGIGKTAFARFAAQA-------LLCE-TPAPGHK--PCGECMSCHLFGQGSHPDFYEITPLSDEPE 85 (325)
T ss_pred cCCcce-EEEeECCCCCCHHHHHHHHHHH-------HcCC-CCCCCCC--CCCcCHHHHHHhcCCCCCEEEEeccccccc
Confidence 578887 34588988448865 5544332 2220 0111122 45555555544 457888888764321 1
Q ss_pred ccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCcee
Q psy1686 138 HGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSP-VVITATNRGVT 216 (448)
Q Consensus 138 ~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~ 216 (448)
.|-..-.-++ ++||+.++.+. .....| .++|++||++|+|+.++++.|+|++|+++.. +||+.|..
T Consensus 86 ~g~~~~~I~i-----d~iR~l~~~~~-~~p~~~----~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~--- 152 (325)
T PRK08699 86 NGRKLLQIKI-----DAVREIIDNVY-LTSVRG----GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHA--- 152 (325)
T ss_pred ccccCCCcCH-----HHHHHHHHHHh-hCcccC----CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCC---
Confidence 1100000012 88998665442 222334 3599999999999999999999999998754 67777776
Q ss_pred EeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhcCCHHHHHHHHHHcCCCCHH
Q psy1686 217 KIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLMQTDGLRVLTKIALDTSLR 277 (448)
Q Consensus 217 lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Rai~deal~~La~~a~~Gd~R 277 (448)
+..+++++.|||++++|.|++.+++.+.|..+.++++. ..+ ..+ +|+..
T Consensus 153 ---------~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~~~~~~-~~l-~~~-~g~p~ 201 (325)
T PRK08699 153 ---------ADKVLPTIKSRCRKMVLPAPSHEEALAYLRERGVAEPE-ERL-AFH-SGAPL 201 (325)
T ss_pred ---------hHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcCCCcHH-HHH-HHh-CCChh
Confidence 66899999999999999999999999998755444432 223 334 56653
No 97
>PRK09087 hypothetical protein; Validated
Probab=99.31 E-value=4e-11 Score=116.16 Aligned_cols=121 Identities=12% Similarity=0.166 Sum_probs=99.7
Q ss_pred eEEEEeccCCCC---HHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCC-Chhhhhhc---ccccCCCCCHHH
Q psy1686 177 GVLFIDEVHMLD---IECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGI-PIDLLDRM---VIIPTQPYQDEE 249 (448)
Q Consensus 177 ~VLfIDEVH~L~---~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~I-p~~lLSR~---~ii~~~pys~~e 249 (448)
++++|||+|.+. .+.|..++...| ++..++|.+++.+|.+.. .++|.||| .++.++|++.++
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~-----------~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~ 157 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQ-----------AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDAL 157 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHh-----------CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHH
Confidence 579999999984 345777777777 356677777778877776 79999999 899999999999
Q ss_pred HHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 250 IQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 250 I~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
+..+|+.++ ++++++++|++.+ .||+|.++.+|.+....+.. .++.||...+++++..+
T Consensus 158 ~~~iL~~~~~~~~~~l~~ev~~~La~~~-~r~~~~l~~~l~~L~~~~~~-~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 158 LSQVIFKLFADRQLYVDPHVVYYLVSRM-ERSLFAAQTIVDRLDRLALE-RKSRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHhh
Confidence 999999666 9999999999999 89999999988877655532 34579999999998754
No 98
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.30 E-value=1.9e-11 Score=123.33 Aligned_cols=114 Identities=12% Similarity=0.087 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCCh
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPI 231 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~ 231 (448)
+++|+.+...-..-.+.| .++|++||++|+++.+++|+|+|++|+||.. +||+.|+. +.++.+
T Consensus 72 d~Ir~l~~~~~~~~~~~~----~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~------------~~kll~ 135 (299)
T PRK07132 72 SEFLSAINKLYFSSFVQS----QKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKN------------INKVLP 135 (299)
T ss_pred HHHHHHHHHhccCCcccC----CceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCC------------hHhChH
Confidence 788876655421111112 3699999999999999999999999999987 66666665 678999
Q ss_pred hhhhhcccccCCCCCHHHHHHHHHHhcCCHHHHHHHHHHcCCCCHHHHHHHHH
Q psy1686 232 DLLDRMVIIPTQPYQDEEIQAILKIRLMQTDGLRVLTKIALDTSLRYAIQLIT 284 (448)
Q Consensus 232 ~lLSR~~ii~~~pys~~eI~~IL~~Rai~deal~~La~~a~~Gd~R~AL~lLe 284 (448)
+++|||++++|.|++.+++.+.|..+.++++....++.++ + ++..|+.++.
T Consensus 136 TI~SRc~~~~f~~l~~~~l~~~l~~~~~~~~~a~~~a~~~-~-~~~~a~~~~~ 186 (299)
T PRK07132 136 TIVSRCQVFNVKEPDQQKILAKLLSKNKEKEYNWFYAYIF-S-NFEQAEKYIN 186 (299)
T ss_pred HHHhCeEEEECCCCCHHHHHHHHHHcCCChhHHHHHHHHc-C-CHHHHHHHHh
Confidence 9999999999999999999999885568888788888887 5 5988888754
No 99
>CHL00181 cbbX CbbX; Provisional
Probab=99.30 E-value=2.7e-11 Score=121.34 Aligned_cols=107 Identities=26% Similarity=0.292 Sum_probs=80.8
Q ss_pred CeEEEEeccCCC---------CHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcc-cccCCC
Q psy1686 176 PGVLFIDEVHML---------DIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV-IIPTQP 244 (448)
Q Consensus 176 ~~VLfIDEVH~L---------~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~-ii~~~p 244 (448)
++||||||+|+| +.++++.|++.+|+.... ++|+|++.. .....+..+++|+|||. +|.|.|
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~-------~~~~~~~~np~L~sR~~~~i~F~~ 195 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKD-------RMDKFYESNPGLSSRIANHVDFPD 195 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcH-------HHHHHHhcCHHHHHhCCceEEcCC
Confidence 489999999997 578999999999986543 444443321 01224556799999997 899999
Q ss_pred CCHHHHHHHHHHhc------CCHHHHHHHHHH----c---CCCCHHHHHHHHHHHHHH
Q psy1686 245 YQDEEIQAILKIRL------MQTDGLRVLTKI----A---LDTSLRYAIQLITTASVV 289 (448)
Q Consensus 245 ys~~eI~~IL~~Ra------i~deal~~La~~----a---~~Gd~R~AL~lLe~a~~~ 289 (448)
|+.+|+.+|++.-+ +++++...+..+ + .-|++|..-++++.+...
T Consensus 196 ~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~ 253 (287)
T CHL00181 196 YTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMR 253 (287)
T ss_pred cCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHH
Confidence 99999999988543 888877666664 1 237899999999988754
No 100
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=9.5e-11 Score=121.27 Aligned_cols=146 Identities=19% Similarity=0.239 Sum_probs=105.6
Q ss_pred CeEEEEeccCCCCHH---HHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcc--cccCCCCCHHH
Q psy1686 176 PGVLFIDEVHMLDIE---CFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV--IIPTQPYQDEE 249 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~---~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~--ii~~~pys~~e 249 (448)
.-|+++||++.|... ..+.|.++.++.-.. .+|+.+|. ..+. -.+-+-+.||.. .|.|+||+.+|
T Consensus 124 ~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~-~~~~--------~~ld~rv~s~l~~~~I~F~pY~a~e 194 (366)
T COG1474 124 TVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSND-DKFL--------DYLDPRVKSSLGPSEIVFPPYTAEE 194 (366)
T ss_pred eEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEecc-HHHH--------HHhhhhhhhccCcceeeeCCCCHHH
Confidence 478999999999654 677777777765211 23333332 1000 112344555553 57799999999
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhc--chhHHH
Q psy1686 250 IQAILKIRL--------MQTDGLRVLTKIA--LDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFL--DEGRST 317 (448)
Q Consensus 250 I~~IL~~Ra--------i~deal~~La~~a--~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~--D~~~s~ 317 (448)
|++||+.|+ +++++++++|..+ ..||+|+|+.+|+.|+..|+.++...|+.++|+++....- -..+.+
T Consensus 195 l~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~~~~~~~~ 274 (366)
T COG1474 195 LYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIERDVLEEVL 274 (366)
T ss_pred HHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhHHHHHHHH
Confidence 999999988 9999999999763 4679999999999999999988999999999999954311 124557
Q ss_pred HHHHHHHhhhhhh
Q psy1686 318 QYLREHQNEYMFD 330 (448)
Q Consensus 318 ~~L~~~~~~~l~~ 330 (448)
+.|..|++.++..
T Consensus 275 ~~L~~~~ki~L~~ 287 (366)
T COG1474 275 KTLPLHQKIVLLA 287 (366)
T ss_pred HcCCHhHHHHHHH
Confidence 7777777777554
No 101
>KOG2035|consensus
Probab=99.26 E-value=8.2e-11 Score=116.59 Aligned_cols=217 Identities=18% Similarity=0.218 Sum_probs=138.8
Q ss_pred CCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcchhh------hhhhccCccccccCCCccCCC
Q psy1686 32 DSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKVKK------ISTATGREEEPDYDGWLADVT 105 (448)
Q Consensus 32 ~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt~~------I~~~~gk~~a~~~d~~~~~~~ 105 (448)
+..||++ ++++.+-+.. ++-|......+-++| ..++||-..||+|.- +. +.|.- .... +..
T Consensus 5 dkyrpks-l~~l~~~~e~---~~~Lksl~~~~d~PH--ll~yGPSGaGKKTrimclL~elY-G~gve---klki---~~~ 71 (351)
T KOG2035|consen 5 DKYRPKS-LDELIYHEEL---ANLLKSLSSTGDFPH--LLVYGPSGAGKKTRIMCLLRELY-GVGVE---KLKI---ETR 71 (351)
T ss_pred hhcCcch-hhhcccHHHH---HHHHHHhcccCCCCe--EEEECCCCCCchhhHHHHHHHHh-CCCch---heee---eeE
Confidence 5689998 7999988776 455666666788888 888998744887611 11 11100 0000 111
Q ss_pred CccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCC-CCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 106 KDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTG-EITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 106 ~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~-eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
.|.. |.+ |+-|+.---+.+-+.+.=| ..|... -+=+|+-+++... ..++.. ..-..+|++|-|+
T Consensus 72 t~~t-pS~---kklEistvsS~yHlEitPS--------DaG~~DRvViQellKevAQt--~qie~~-~qr~fKvvvi~ea 136 (351)
T KOG2035|consen 72 TFTT-PSK---KKLEISTVSSNYHLEITPS--------DAGNYDRVVIQELLKEVAQT--QQIETQ-GQRPFKVVVINEA 136 (351)
T ss_pred EEec-CCC---ceEEEEEecccceEEeChh--------hcCcccHHHHHHHHHHHHhh--cchhhc-cccceEEEEEech
Confidence 2322 222 1222222112222222211 112100 0112222222221 112111 1124699999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
+-|++++|-+|-|++|-+... .+|+..|. ...|.+++.|||+.++....+++||..+|..-+
T Consensus 137 d~LT~dAQ~aLRRTMEkYs~~~RlIl~cns------------~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l 204 (351)
T KOG2035|consen 137 DELTRDAQHALRRTMEKYSSNCRLILVCNS------------TSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL 204 (351)
T ss_pred HhhhHHHHHHHHHHHHHHhcCceEEEEecC------------cccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999876 66666676 556889999999999999999999998888544
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVV 289 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~ 289 (448)
+.++.+..|++-+ +|++|.||-+||.+...
T Consensus 205 ~lp~~~l~rIa~kS-~~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 205 QLPKELLKRIAEKS-NRNLRRALLMLEAVRVN 235 (351)
T ss_pred cCcHHHHHHHHHHh-cccHHHHHHHHHHHHhc
Confidence 8899999999999 99999999999988654
No 102
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.24 E-value=2.4e-10 Score=109.36 Aligned_cols=121 Identities=15% Similarity=0.156 Sum_probs=92.2
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC---CCeEEEEecCceeEeeccccCC-CCCCChhhhhhc---ccccCCCCCHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM---SPVVITATNRGVTKIRGTAYSS-PHGIPIDLLDRM---VIIPTQPYQDE 248 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~---~pi~IlaT~~~i~lI~~Ttenp-~~~Ip~~lLSR~---~ii~~~pys~~ 248 (448)
.+++||||+|.++...+..|...++... .++++++++. .| ...+-.++.||+ ..+++.|++.+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~----------~~~~~~l~~~L~sr~~~~~~i~l~pl~~~ 160 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPA----------APLALPLREDLRTRLGWGLVYELKPLSDA 160 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCC----------CHHhCCCCHHHHHHHhcCeEEEecCCCHH
Confidence 3789999999999888888888776422 1234333332 22 223458899996 79999999999
Q ss_pred HHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 249 EIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 249 eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+...+|+..+ ++++++++|++.. .||+|.+.++|+....+|. ..++.||...++++++
T Consensus 161 ~~~~~l~~~~~~~~v~l~~~al~~L~~~~-~gn~~~l~~~l~~l~~~~~-~~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 161 DKIAALKAAAAERGLQLADEVPDYLLTHF-RRDMPSLMALLDALDRYSL-EQKRPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHH-HhCCCCCHHHHHHHHh
Confidence 8888887422 9999999999987 9999999999998765553 3346899999999875
No 103
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.21 E-value=9.2e-11 Score=117.20 Aligned_cols=107 Identities=22% Similarity=0.260 Sum_probs=82.3
Q ss_pred CeEEEEeccCCC---------CHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcc-cccCCC
Q psy1686 176 PGVLFIDEVHML---------DIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV-IIPTQP 244 (448)
Q Consensus 176 ~~VLfIDEVH~L---------~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~-ii~~~p 244 (448)
++||||||+|+| +.+.++.|++.+|+.... ++|++++.. .....+.++++|+|||. .|.|.|
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~-------~~~~~~~~np~L~sR~~~~i~fp~ 194 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKD-------RMDSFFESNPGFSSRVAHHVDFPD 194 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcH-------HHHHHHhhCHHHHhhCCcEEEeCC
Confidence 489999999988 467889999999976433 333333221 01235567899999995 899999
Q ss_pred CCHHHHHHHHHHhc------CCHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHH
Q psy1686 245 YQDEEIQAILKIRL------MQTDGLRVLTKI-------ALDTSLRYAIQLITTASVV 289 (448)
Q Consensus 245 ys~~eI~~IL~~Ra------i~deal~~La~~-------a~~Gd~R~AL~lLe~a~~~ 289 (448)
|+.+|+.+|++.-+ +++++++.+.++ ..-|++|.+-|+++.+...
T Consensus 195 l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 195 YSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred cCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 99999999988533 899999988887 3358999999999998754
No 104
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.21 E-value=2e-10 Score=118.22 Aligned_cols=133 Identities=23% Similarity=0.228 Sum_probs=90.6
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCe----EEEEecCceeEeeccccCCCC-CCChhhhhhcc-cccCCCCCH-H
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPV----VITATNRGVTKIRGTAYSSPH-GIPIDLLDRMV-IIPTQPYQD-E 248 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi----~IlaT~~~i~lI~~Ttenp~~-~Ip~~lLSR~~-ii~~~pys~-~ 248 (448)
.++||||||++|+...|+.|+.++++....+ .-...... ++-.+|.||.. .+|+++++|+. .+.+...+. +
T Consensus 145 ~GiL~lDEInrL~~~~Q~~LLeam~e~~~~ier~G~s~~~p~r--fiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~ 222 (350)
T CHL00081 145 RGILYVDEVNLLDDHLVDILLDSAASGWNTVEREGISIRHPAR--FVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPE 222 (350)
T ss_pred CCEEEecChHhCCHHHHHHHHHHHHhCCeEEeeCCeeeecCCC--EEEEeccCcccCCCCHHHHHHhCceeecCCCCChH
Confidence 4899999999999999999999998621000 00000111 22222444433 48999999986 445554442 2
Q ss_pred HHHHHHH-----------------------------Hhc------CCHHHHHHHHHHcC--C-CCHHHHHHHHHHHHHHh
Q psy1686 249 EIQAILK-----------------------------IRL------MQTDGLRVLTKIAL--D-TSLRYAIQLITTASVVC 290 (448)
Q Consensus 249 eI~~IL~-----------------------------~Ra------i~deal~~La~~a~--~-Gd~R~AL~lLe~a~~~a 290 (448)
+-.+||+ .|. ++++.+++|++++. + -+.|-.+.++..|...|
T Consensus 223 ~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~A 302 (350)
T CHL00081 223 LRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALA 302 (350)
T ss_pred HHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHH
Confidence 2223332 121 89999999999852 2 38999999999998877
Q ss_pred hhhCCCcccHHHHHHHHHHh
Q psy1686 291 RRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 291 ~~~~~~~It~e~V~~~~~lf 310 (448)
--+|+..|+.+||+.+..+.
T Consensus 303 al~GR~~V~pdDv~~~a~~v 322 (350)
T CHL00081 303 AFEGRTEVTPKDIFKVITLC 322 (350)
T ss_pred HHcCCCCCCHHHHHHHHHHH
Confidence 66888999999999998754
No 105
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.18 E-value=4.8e-11 Score=135.34 Aligned_cols=205 Identities=19% Similarity=0.178 Sum_probs=133.0
Q ss_pred CCCCCCCCCccccccccccchhhhhhhHHHHHHHh---cCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCcc
Q psy1686 27 GLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIK---EEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLA 102 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~---~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~ 102 (448)
|.+|.+..||.. ++.+|||++. ++++|+ .++..+ .+++|||..|||+ ++-.. ...-
T Consensus 160 ~~~l~~~~~~~~-~~~~igr~~e------i~~~~~~l~r~~~~n--~lL~G~pGvGKT~l~~~la-------~~i~---- 219 (852)
T TIGR03346 160 ARDLTERAREGK-LDPVIGRDEE------IRRTIQVLSRRTKNN--PVLIGEPGVGKTAIVEGLA-------QRIV---- 219 (852)
T ss_pred hhhHHHHhhCCC-CCcCCCcHHH------HHHHHHHHhcCCCCc--eEEEcCCCCCHHHHHHHHH-------HHHh----
Confidence 357888899998 7999999996 455554 444455 5689998448875 33110 0000
Q ss_pred CCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCC--CCCCchHHHHHHHHHHHHHHHhCcccccCeEEE
Q psy1686 103 DVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGD--TGEITPEVREQISAKVTEWREEGKAEIVPGVLF 180 (448)
Q Consensus 103 ~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~--~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLf 180 (448)
..++| .. .+...+..+|+ .++.+|. .++.-..+++.++... ..+ .+.|||
T Consensus 220 --~~~~p--~~--------l~~~~~~~l~~--------~~l~a~~~~~g~~e~~l~~~l~~~~----~~~----~~~ILf 271 (852)
T TIGR03346 220 --NGDVP--ES--------LKNKRLLALDM--------GALIAGAKYRGEFEERLKAVLNEVT----KSE----GQIILF 271 (852)
T ss_pred --ccCCc--hh--------hcCCeEEEeeH--------HHHhhcchhhhhHHHHHHHHHHHHH----hcC----CCeEEE
Confidence 01111 00 00111111222 2222222 2333344555554331 222 258999
Q ss_pred EeccCCCC--------HHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCC---CCCChhhhhhcccccCCCCCHHH
Q psy1686 181 IDEVHMLD--------IECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSP---HGIPIDLLDRMVIIPTQPYQDEE 249 (448)
Q Consensus 181 IDEVH~L~--------~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~---~~Ip~~lLSR~~ii~~~pys~~e 249 (448)
|||+|+|. .++.+.|..+++ ++.+.+|++||.+++ +...+++.+||..|.+.+.+.++
T Consensus 272 IDEih~l~~~g~~~~~~d~~~~Lk~~l~-----------~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~ 340 (852)
T TIGR03346 272 IDELHTLVGAGKAEGAMDAGNMLKPALA-----------RGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVED 340 (852)
T ss_pred eccHHHhhcCCCCcchhHHHHHhchhhh-----------cCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHH
Confidence 99999995 245677766655 578999999998877 77899999999988999999999
Q ss_pred HHHHHHHhc----------CCHHHHHHHHHHcC--CCC---HHHHHHHHHHHHHHh
Q psy1686 250 IQAILKIRL----------MQTDGLRVLTKIAL--DTS---LRYAIQLITTASVVC 290 (448)
Q Consensus 250 I~~IL~~Ra----------i~deal~~La~~a~--~Gd---~R~AL~lLe~a~~~a 290 (448)
...||+... ++++++..++.+|. -+| +..|+.+|+.|+...
T Consensus 341 ~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~ 396 (852)
T TIGR03346 341 TISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARI 396 (852)
T ss_pred HHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHH
Confidence 999987422 89999999998872 124 889999999987543
No 106
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.17 E-value=7.8e-10 Score=104.85 Aligned_cols=120 Identities=16% Similarity=0.189 Sum_probs=86.9
Q ss_pred eEEEEeccCCCCH--HHHHHHHHhhhhcC--CCeEEEEecCceeEeeccccCCCCCCC-hhhhhhc---ccccCCCCCHH
Q psy1686 177 GVLFIDEVHMLDI--ECFSFLNRALESEM--SPVVITATNRGVTKIRGTAYSSPHGIP-IDLLDRM---VIIPTQPYQDE 248 (448)
Q Consensus 177 ~VLfIDEVH~L~~--~~f~~Llk~lEe~~--~pi~IlaT~~~i~lI~~Ttenp~~~Ip-~~lLSR~---~ii~~~pys~~ 248 (448)
++|+|||+|+++. +.+..|...++... ...+|++++. ..+...+. +++.+|+ ..+++.|++.+
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~---------~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~ 162 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRA---------APAQLPLRLPDLRTRLAWGLVFQLPPLSDE 162 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCC---------ChHHCCcccHHHHHHHhcCeeEecCCCCHH
Confidence 6899999999975 33666666554321 1133333332 11111133 7888897 48999999999
Q ss_pred HHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHH
Q psy1686 249 EIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 249 eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~ 307 (448)
|+..+++..+ ++++++++|++.. .|++|.+.++|+.+..++.. +++.||.+.|++++
T Consensus 163 e~~~~l~~~~~~~~~~~~~~~l~~L~~~~-~gn~r~L~~~l~~~~~~~~~-~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 163 EKIAALQSRAARRGLQLPDEVADYLLRHG-SRDMGSLMALLDALDRASLA-AKRKITIPFVKEVL 225 (226)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHh
Confidence 9999988543 9999999999987 99999999999998766544 44579999998875
No 107
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.15 E-value=2.1e-10 Score=130.20 Aligned_cols=204 Identities=18% Similarity=0.174 Sum_probs=129.2
Q ss_pred CCCCCCCCCccccccccccchhhhhhhHHHHHHHh---cCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCcc
Q psy1686 27 GLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIK---EEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLA 102 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~---~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~ 102 (448)
|-+|.+..||.. ++.+|||++. ++++|+ ..+-.+ .+++|||..|||+ ++..+.. .-
T Consensus 165 ~~~l~~~~r~~~-l~~vigr~~e------i~~~i~iL~r~~~~n--~lL~G~pGvGKT~l~~~la~~-------i~---- 224 (857)
T PRK10865 165 TIDLTERAEQGK-LDPVIGRDEE------IRRTIQVLQRRTKNN--PVLIGEPGVGKTAIVEGLAQR-------II---- 224 (857)
T ss_pred hhhHHHHHhcCC-CCcCCCCHHH------HHHHHHHHhcCCcCc--eEEECCCCCCHHHHHHHHHHH-------hh----
Confidence 467888899998 7999999996 566664 444445 6699998448876 3311110 00
Q ss_pred CCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCC--CCCCchHHHHHHHHHHHHHHHhCcccccCeEEE
Q psy1686 103 DVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGD--TGEITPEVREQISAKVTEWREEGKAEIVPGVLF 180 (448)
Q Consensus 103 ~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~--~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLf 180 (448)
...+| .. .+...+..+| +.++.+|. .++....+++.+++.. ..+ .+.|||
T Consensus 225 --~~~vp--~~--------l~~~~~~~l~--------l~~l~ag~~~~g~~e~~lk~~~~~~~----~~~----~~~ILf 276 (857)
T PRK10865 225 --NGEVP--EG--------LKGRRVLALD--------MGALVAGAKYRGEFEERLKGVLNDLA----KQE----GNVILF 276 (857)
T ss_pred --cCCCc--hh--------hCCCEEEEEe--------hhhhhhccchhhhhHHHHHHHHHHHH----HcC----CCeEEE
Confidence 01111 00 0001111122 22223222 3444456666665432 122 258999
Q ss_pred EeccCCCCH--------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCC---CCCChhhhhhcccccCCCCCHHH
Q psy1686 181 IDEVHMLDI--------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSP---HGIPIDLLDRMVIIPTQPYQDEE 249 (448)
Q Consensus 181 IDEVH~L~~--------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~---~~Ip~~lLSR~~ii~~~pys~~e 249 (448)
|||+|+|.. ++.+.|.++++ ++.+.+|++||.+++ +.+.+++.+||..+.+..-+.++
T Consensus 277 IDEih~l~~~~~~~~~~d~~~~lkp~l~-----------~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~ 345 (857)
T PRK10865 277 IDELHTMVGAGKADGAMDAGNMLKPALA-----------RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVED 345 (857)
T ss_pred EecHHHhccCCCCccchhHHHHhcchhh-----------cCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHH
Confidence 999999953 46888887776 688999999999886 77899999999755555558888
Q ss_pred HHHHHHHhc----------CCHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHH
Q psy1686 250 IQAILKIRL----------MQTDGLRVLTKIAL-----DTSLRYAIQLITTASVV 289 (448)
Q Consensus 250 I~~IL~~Ra----------i~deal~~La~~a~-----~Gd~R~AL~lLe~a~~~ 289 (448)
...||+... ++++++...+.++. ..=...|+.+++.++..
T Consensus 346 ~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~ 400 (857)
T PRK10865 346 TIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASS 400 (857)
T ss_pred HHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhcc
Confidence 888886311 78998887767651 22456788888877543
No 108
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.15 E-value=4.8e-10 Score=118.48 Aligned_cols=120 Identities=21% Similarity=0.277 Sum_probs=91.8
Q ss_pred CeEEEEeccCCCCH------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCC---CChhhhhhc---ccccCC
Q psy1686 176 PGVLFIDEVHMLDI------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHG---IPIDLLDRM---VIIPTQ 243 (448)
Q Consensus 176 ~~VLfIDEVH~L~~------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~---Ip~~lLSR~---~ii~~~ 243 (448)
..+|+|||||.+.. +.|+.|+..++.. .+++ ++++. ||.. +.+.+.||+ +++.++
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~-~~ii-its~~-----------~p~~l~~l~~~l~SRl~~gl~v~i~ 278 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAG-KQIV-LTSDR-----------PPKELPGLEERLRSRFEWGLTVDIE 278 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCC-CcEE-EECCC-----------CHHHHHHHHHHHHhHhcCCeeEEec
Confidence 47999999999943 3455555666632 2232 23332 2333 557899999 589999
Q ss_pred CCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 244 PYQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 244 pys~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
|++.++..+||+.++ ++++++++|++.+ .||+|...++|.....++... +..||.+.+++++..+
T Consensus 279 ~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~-~~~~R~l~~~l~~l~~~~~~~-~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 279 PPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNI-TSNVRELEGALNRLIAYASLT-GKPITLELAKEALKDL 349 (450)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCc-CCCHHHHHHHHHHHHHHHHhh-CCCCCHHHHHHHHHHh
Confidence 999999999999776 9999999999999 999999999999887666433 4569999999999854
No 109
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.04 E-value=4.5e-09 Score=112.50 Aligned_cols=214 Identities=19% Similarity=0.265 Sum_probs=133.0
Q ss_pred CccccccccccchhhhhhhHHHHHHHhcC--------CC-CCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCC
Q psy1686 35 EPRKVSQGMVGQLQARRAAGVVLGMIKEE--------VV-MVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADV 104 (448)
Q Consensus 35 ~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~--------ki-~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~ 104 (448)
.|...+++++|++++++...-+...++.. +. .| +.++|||.+|||+ ++.. |++.+
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~g--iLL~GppGtGKT~la~al-------A~~~~------ 113 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKG--VLLVGPPGTGKTLLAKAV-------AGEAG------ 113 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCc--EEEECCCCCCHHHHHHHH-------HHHcC------
Confidence 56777999999999987754444444421 11 13 7789999558875 5532 12222
Q ss_pred CCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 105 TKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 105 ~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
.+|+.++..++. ..+.|. =.+.+|+.+..+.. . .|.||||||+
T Consensus 114 ~~~~~i~~~~~~-------------------------~~~~g~---~~~~l~~~f~~a~~------~---~p~Il~iDEi 156 (495)
T TIGR01241 114 VPFFSISGSDFV-------------------------EMFVGV---GASRVRDLFEQAKK------N---APCIIFIDEI 156 (495)
T ss_pred CCeeeccHHHHH-------------------------HHHhcc---cHHHHHHHHHHHHh------c---CCCEEEEech
Confidence 245543222211 111121 11567766665421 1 3689999999
Q ss_pred CCCCHH--------------HHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhh--hcc-cccCCCCCH
Q psy1686 185 HMLDIE--------------CFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-IIPTQPYQD 247 (448)
Q Consensus 185 H~L~~~--------------~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-ii~~~pys~ 247 (448)
|.+... ..+.|+..++... .+.++.+|++| |.+..+.+++++ |+- .+.+.+.+.
T Consensus 157 d~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~-------~~~~v~vI~aT--n~~~~ld~al~r~gRfd~~i~i~~Pd~ 227 (495)
T TIGR01241 157 DAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG-------TNTGVIVIAAT--NRPDVLDPALLRPGRFDRQVVVDLPDI 227 (495)
T ss_pred hhhhhccccCcCCccHHHHHHHHHHHhhhcccc-------CCCCeEEEEec--CChhhcCHHHhcCCcceEEEEcCCCCH
Confidence 998432 2334444444321 12233344433 337789999987 553 788999999
Q ss_pred HHHHHHHHHhc----C-CHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 248 EEIQAILKIRL----M-QTDGLRVLTKIALDT-SLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 248 ~eI~~IL~~Ra----i-~deal~~La~~a~~G-d~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
++-.+|++... + ++..+..+++.+ .| +.++.-+++..|...|..++...|+.+++++++...
T Consensus 228 ~~R~~il~~~l~~~~~~~~~~l~~la~~t-~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 228 KGREEILKVHAKNKKLAPDVDLKAVARRT-PGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRV 295 (495)
T ss_pred HHHHHHHHHHHhcCCCCcchhHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 88889888543 3 344577888887 55 778888888888766655566789999999999753
No 110
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.03 E-value=3.7e-09 Score=108.41 Aligned_cols=133 Identities=25% Similarity=0.280 Sum_probs=90.8
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEE----EEecCceeEeeccccCCC-CCCChhhhhhcc-cccCCCCCH-H
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVI----TATNRGVTKIRGTAYSSP-HGIPIDLLDRMV-IIPTQPYQD-E 248 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~I----laT~~~i~lI~~Ttenp~-~~Ip~~lLSR~~-ii~~~pys~-~ 248 (448)
.++|||||+|+|+...|+.|+.++++....+-. ..-+..+++|. |.||. ..+|+++++|+. .+.+.+... +
T Consensus 132 ~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~ivia--t~np~eg~l~~~LldRf~l~i~l~~p~~~e 209 (337)
T TIGR02030 132 RGILYIDEVNLLEDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVG--SGNPEEGELRPQLLDRFGLHAEIRTVRDVE 209 (337)
T ss_pred CCEEEecChHhCCHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEe--ccccccCCCCHHHHhhcceEEECCCCCCHH
Confidence 389999999999999999999999874200000 00011112222 23332 358999999996 444544443 4
Q ss_pred HHHHHHHHh-----------------------------c------CCHHHHHHHHHHc--CCC-CHHHHHHHHHHHHHHh
Q psy1686 249 EIQAILKIR-----------------------------L------MQTDGLRVLTKIA--LDT-SLRYAIQLITTASVVC 290 (448)
Q Consensus 249 eI~~IL~~R-----------------------------a------i~deal~~La~~a--~~G-d~R~AL~lLe~a~~~a 290 (448)
+-.+|++.+ . ++++++++|++++ .+. +.|-++.++..|...|
T Consensus 210 er~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~A 289 (337)
T TIGR02030 210 LRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALA 289 (337)
T ss_pred HHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHH
Confidence 434444321 0 8899999998874 123 6899999999998887
Q ss_pred hhhCCCcccHHHHHHHHHHh
Q psy1686 291 RRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 291 ~~~~~~~It~e~V~~~~~lf 310 (448)
.-+|+..|+.+||+.+..+.
T Consensus 290 al~GR~~V~~dDv~~~a~~v 309 (337)
T TIGR02030 290 AFEGRTEVTVDDIRRVAVLA 309 (337)
T ss_pred HHcCCCCCCHHHHHHHHHHH
Confidence 77888899999999998754
No 111
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.03 E-value=2.8e-09 Score=119.97 Aligned_cols=225 Identities=16% Similarity=0.182 Sum_probs=126.8
Q ss_pred ccccc-cccchhhhhhhH-HHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhh-ccCccccccCCCccCCCCccccCCC
Q psy1686 38 KVSQG-MVGQLQARRAAG-VVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTA-TGREEEPDYDGWLADVTKDLRCPDG 113 (448)
Q Consensus 38 ~~~~~-~VGQ~~~r~a~~-~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~-~gk~~a~~~d~~~~~~~~fv~~p~g 113 (448)
..++. ..|++.+++..- .+..+...++..||++.+.|||..|||+ +++..+ .| .+|..+--|
T Consensus 318 ~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~--------------~~~~~i~~~ 383 (784)
T PRK10787 318 EILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG--------------RKYVRMALG 383 (784)
T ss_pred HHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC--------------CCEEEEEcC
Confidence 33454 999999987632 1222333455678999999999558876 554322 22 133332112
Q ss_pred cccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHH--
Q psy1686 114 ELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIEC-- 191 (448)
Q Consensus 114 e~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~-- 191 (448)
.+. +...+. |....+.|. -...+.+.+.. .+. ...|+||||+|.+++..
T Consensus 384 ~~~------------d~~~i~----g~~~~~~g~---~~G~~~~~l~~-------~~~---~~~villDEidk~~~~~~g 434 (784)
T PRK10787 384 GVR------------DEAEIR----GHRRTYIGS---MPGKLIQKMAK-------VGV---KNPLFLLDEIDKMSSDMRG 434 (784)
T ss_pred CCC------------CHHHhc----cchhccCCC---CCcHHHHHHHh-------cCC---CCCEEEEEChhhcccccCC
Confidence 111 111110 111111111 11223333322 121 24799999999998875
Q ss_pred --HHHHHHhhhhcCCCeEE------EEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 192 --FSFLNRALESEMSPVVI------TATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 192 --f~~Llk~lEe~~~pi~I------laT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
+++|+.+++......|- -..-..+++|. |+ | ++.||++|||||.+|.|.+|+.+|+.+|.+...
T Consensus 435 ~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~-Ta-N-~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~ 511 (784)
T PRK10787 435 DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVA-TS-N-SMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQI 511 (784)
T ss_pred CHHHHHHHHhccccEEEEecccccccccCCceEEEE-cC-C-CCCCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHH
Confidence 59999999852111110 00113344554 33 4 457999999999999999999999988865311
Q ss_pred -----------CCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHH--hhh--hC---CCcccHHHHHHHHH
Q psy1686 259 -----------MQTDGLRVLTKIA-LDTSLRYAIQLITTASVV--CRR--RK---ATEICMEDIRKVYA 308 (448)
Q Consensus 259 -----------i~deal~~La~~a-~~Gd~R~AL~lLe~a~~~--a~~--~~---~~~It~e~V~~~~~ 308 (448)
++++++++|++.. .+-.+|..=..++..+.. +.. .+ ...|+.+++.+.++
T Consensus 512 ~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 512 ERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLG 580 (784)
T ss_pred HHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhC
Confidence 9999999998742 122555544444443321 110 11 13688888888775
No 112
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.02 E-value=2.1e-08 Score=97.53 Aligned_cols=145 Identities=18% Similarity=0.179 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhc---CCC-eEEEEecCceeEeeccccCCCCCC
Q psy1686 154 EVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESE---MSP-VVITATNRGVTKIRGTAYSSPHGI 229 (448)
Q Consensus 154 eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~---~~p-i~IlaT~~~i~lI~~Ttenp~~~I 229 (448)
++...+...+......|+ +.|++|||+|.++.++++.|....+-. ... .++++.... +.. ..+.+.
T Consensus 106 ~~~~~l~~~l~~~~~~~~----~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~--~~~--~l~~~~-- 175 (269)
T TIGR03015 106 ALLRELEDFLIEQFAAGK----RALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE--FRE--TLQSPQ-- 175 (269)
T ss_pred HHHHHHHHHHHHHHhCCC----CeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH--HHH--HHcCch--
Confidence 334444444333334453 479999999999998888765433311 111 112111110 000 001111
Q ss_pred Chhhhhhc-ccccCCCCCHHHHHHHHHHhc----------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcc
Q psy1686 230 PIDLLDRM-VIIPTQPYQDEEIQAILKIRL----------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEI 298 (448)
Q Consensus 230 p~~lLSR~-~ii~~~pys~~eI~~IL~~Ra----------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~I 298 (448)
..++.+|+ ..+.+.|++.+|+.+.+..+. +++++++.|.+.+ +|++|....+...+...|...+...|
T Consensus 176 ~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s-~G~p~~i~~l~~~~~~~a~~~~~~~i 254 (269)
T TIGR03015 176 LQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFS-RGIPRLINILCDRLLLSAFLEEKREI 254 (269)
T ss_pred hHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHc-CCcccHHHHHHHHHHHHHHHcCCCCC
Confidence 24677885 488999999999999887543 8999999999999 99999988888888776655677889
Q ss_pred cHHHHHHHHHH
Q psy1686 299 CMEDIRKVYAL 309 (448)
Q Consensus 299 t~e~V~~~~~l 309 (448)
+.++|+.+..-
T Consensus 255 ~~~~v~~~~~~ 265 (269)
T TIGR03015 255 GGEEVREVIAE 265 (269)
T ss_pred CHHHHHHHHHH
Confidence 99999998864
No 113
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.01 E-value=2.4e-09 Score=120.41 Aligned_cols=222 Identities=17% Similarity=0.183 Sum_probs=125.1
Q ss_pred ccccccchhhhhhhHHHHHHH----hcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCc
Q psy1686 40 SQGMVGQLQARRAAGVVLGMI----KEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGE 114 (448)
Q Consensus 40 ~~~~VGQ~~~r~a~~~l~~mI----~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge 114 (448)
-++++||+.+.+. +.+.+ ..++..+|.+.++|||..|||+ |+..++ .+. .+|+.+..|.
T Consensus 319 ~~~~~G~~~~k~~---i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~-------~l~------~~~~~i~~~~ 382 (775)
T TIGR00763 319 DEDHYGLKKVKER---ILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK-------ALN------RKFVRFSLGG 382 (775)
T ss_pred hhhcCChHHHHHH---HHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH-------Hhc------CCeEEEeCCC
Confidence 3468999999865 33332 2344566778899999558875 553322 111 2444433332
Q ss_pred ccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHH---
Q psy1686 115 LQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIEC--- 191 (448)
Q Consensus 115 ~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~--- 191 (448)
+. +.+-......++ . +.....+++.+..+ +. ...|+||||||.+++..
T Consensus 383 ~~------------~~~~i~g~~~~~----~---g~~~g~i~~~l~~~-------~~---~~~villDEidk~~~~~~~~ 433 (775)
T TIGR00763 383 VR------------DEAEIRGHRRTY----V---GAMPGRIIQGLKKA-------KT---KNPLFLLDEIDKIGSSFRGD 433 (775)
T ss_pred cc------------cHHHHcCCCCce----e---CCCCchHHHHHHHh-------Cc---CCCEEEEechhhcCCccCCC
Confidence 21 111110000001 1 11223455443322 11 23699999999997643
Q ss_pred -HHHHHHhhhhcCCCeEE------EEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHh-------
Q psy1686 192 -FSFLNRALESEMSPVVI------TATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIR------- 257 (448)
Q Consensus 192 -f~~Llk~lEe~~~pi~I------laT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~R------- 257 (448)
.++|+..++......|. -.....+++|. |.|+++.+|++|+|||.+|.|.+|+.+|..+|++..
T Consensus 434 ~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~--TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~ 511 (775)
T TIGR00763 434 PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIA--TANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALE 511 (775)
T ss_pred HHHHHHHhcCHHhcCccccccCCceeccCCEEEEE--ecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 58899888742111110 00112334442 225588899999999999999999999998888631
Q ss_pred --c-------CCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHH-hhh---hCC--------CcccHHHHHHHHH
Q psy1686 258 --L-------MQTDGLRVLTKIA-LDTSLRYAIQLITTASVV-CRR---RKA--------TEICMEDIRKVYA 308 (448)
Q Consensus 258 --a-------i~deal~~La~~a-~~Gd~R~AL~lLe~a~~~-a~~---~~~--------~~It~e~V~~~~~ 308 (448)
. ++++++.+|++.- .+.++|..-..++..... |.. .+. ..|+.+++++.++
T Consensus 512 ~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 512 DHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLG 584 (775)
T ss_pred HcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcC
Confidence 0 8999999998853 233555554444443321 111 111 3678887777765
No 114
>CHL00176 ftsH cell division protein; Validated
Probab=99.00 E-value=5.4e-09 Score=115.24 Aligned_cols=219 Identities=20% Similarity=0.223 Sum_probs=135.2
Q ss_pred CccccccccccchhhhhhhHHHHHHHhcCCC----C---CCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 35 EPRKVSQGMVGQLQARRAAGVVLGMIKEEVV----M---VWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 35 ~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki----~---gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.+...|++++|++++.+...-+.+.++..+. . ..-+.++|||.+|||+ ++..++ +.+ .+
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~-------e~~------~p 243 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG-------EAE------VP 243 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH-------HhC------CC
Confidence 3444589999999998887666666664432 1 0227889999558875 553322 111 24
Q ss_pred ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 107 DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
|+.+...++ ...+.|.. .+.+|+.+..+. .+ .|.||||||+|.
T Consensus 244 ~i~is~s~f-------------------------~~~~~g~~---~~~vr~lF~~A~-----~~----~P~ILfIDEID~ 286 (638)
T CHL00176 244 FFSISGSEF-------------------------VEMFVGVG---AARVRDLFKKAK-----EN----SPCIVFIDEIDA 286 (638)
T ss_pred eeeccHHHH-------------------------HHHhhhhh---HHHHHHHHHHHh-----cC----CCcEEEEecchh
Confidence 544322221 11111210 145666665542 11 378999999999
Q ss_pred CC-----------HHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhh--c-ccccCCCCCHHHHHH
Q psy1686 187 LD-----------IECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDR--M-VIIPTQPYQDEEIQA 252 (448)
Q Consensus 187 L~-----------~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR--~-~ii~~~pys~~eI~~ 252 (448)
|. .+....|+..+.+-... ..+.++.+|++|+ .+..+.++++++ + ..+.+.+++.++-.+
T Consensus 287 l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~----~~~~~ViVIaaTN--~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~ 360 (638)
T CHL00176 287 VGRQRGAGIGGGNDEREQTLNQLLTEMDGF----KGNKGVIVIAATN--RVDILDAALLRPGRFDRQITVSLPDREGRLD 360 (638)
T ss_pred hhhcccCCCCCCcHHHHHHHHHHHhhhccc----cCCCCeeEEEecC--chHhhhhhhhccccCceEEEECCCCHHHHHH
Confidence 83 23344455444321100 0122233333331 256688888864 3 478899999999999
Q ss_pred HHHHhc-----CCHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 253 ILKIRL-----MQTDGLRVLTKIALDT-SLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 253 IL~~Ra-----i~deal~~La~~a~~G-d~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
||+..+ .++..+..|++.+ .| +.|+.-+++..|+..|..++...|+.+++++++...
T Consensus 361 IL~~~l~~~~~~~d~~l~~lA~~t-~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 361 ILKVHARNKKLSPDVSLELIARRT-PGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHHHhhcccchhHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 998654 4556688899988 55 888888888888776655677789999999998753
No 115
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=3.3e-09 Score=103.94 Aligned_cols=117 Identities=10% Similarity=0.100 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCCh
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPI 231 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~ 231 (448)
+++|+.+.. ......+| .++|++||++|+++.++.|+|+|++||||.. +||+.|+. +..+++
T Consensus 72 dqIReL~~~-l~~~p~~g----~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~------------~~~LLp 134 (263)
T PRK06581 72 EQIRKLQDF-LSKTSAIS----GYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSR------------AASIIS 134 (263)
T ss_pred HHHHHHHHH-HhhCcccC----CcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCC------------hhhCch
Confidence 788875443 33333344 4599999999999999999999999999987 66777776 788999
Q ss_pred hhhhhcccccCCCCCHHHHHHHHHHhc---CCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy1686 232 DLLDRMVIIPTQPYQDEEIQAILKIRL---MQTDGLRVLTKIALDTSLRYAIQLITTAS 287 (448)
Q Consensus 232 ~lLSR~~ii~~~pys~~eI~~IL~~Ra---i~deal~~La~~a~~Gd~R~AL~lLe~a~ 287 (448)
+++|||++++|+.-+..+..+....-. .+..-+++|.+.. .-|.-..+...+.+.
T Consensus 135 TIrSRCq~i~~~~p~~~~~~e~~~~~~~p~~~~~~l~~i~~~~-~~d~~~w~~~~~~~~ 192 (263)
T PRK06581 135 TIRSRCFKINVRSSILHAYNELYSQFIQPIADNKTLDFINRFT-TKDRELWLDFIDNLL 192 (263)
T ss_pred hHhhceEEEeCCCCCHHHHHHHHHHhcccccccHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 999999999999988877776655333 6666788888886 556666665555443
No 116
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.98 E-value=4.8e-09 Score=103.58 Aligned_cols=216 Identities=20% Similarity=0.222 Sum_probs=141.7
Q ss_pred CCccccccccccchhhhhhhHHHHHHHhcCCCCC----CCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCcc
Q psy1686 34 LEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMV----WPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDL 108 (448)
Q Consensus 34 ~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~g----pf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv 108 (448)
..+.-.++++|||+.+.+.+.+|.+-+++-.--| -=+.|+|||.+|||. |+-.+ ++.+ .+|.
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akala-------ne~k------vp~l 180 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALA-------NEAK------VPLL 180 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHh-------cccC------CceE
Confidence 3455568999999999999999999988754333 225678998557763 55332 2222 2344
Q ss_pred ccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCC
Q psy1686 109 RCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLD 188 (448)
Q Consensus 109 ~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~ 188 (448)
....-+ +..-.-|+ =...||+.-..+ .+.-|+|+||||++-+.
T Consensus 181 ~vkat~-------------------------liGehVGd---gar~Ihely~rA---------~~~aPcivFiDE~DAia 223 (368)
T COG1223 181 LVKATE-------------------------LIGEHVGD---GARRIHELYERA---------RKAAPCIVFIDELDAIA 223 (368)
T ss_pred EechHH-------------------------HHHHHhhh---HHHHHHHHHHHH---------HhcCCeEEEehhhhhhh
Confidence 310000 00000111 113444433332 12358999999999872
Q ss_pred ------------HHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcc-cccCCCCCHHHHHHHHH
Q psy1686 189 ------------IECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV-IIPTQPYQDEEIQAILK 255 (448)
Q Consensus 189 ------------~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~-ii~~~pys~~eI~~IL~ 255 (448)
.+..|+|+.-+... -+|.|++.|++|+. |--+-+++.||+- -|.|+--+.+|...||+
T Consensus 224 LdRryQelRGDVsEiVNALLTelDgi-------~eneGVvtIaaTN~--p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile 294 (368)
T COG1223 224 LDRRYQELRGDVSEIVNALLTELDGI-------KENEGVVTIAATNR--PELLDPAIRSRFEEEIEFKLPNDEERLEILE 294 (368)
T ss_pred hhhhHHHhcccHHHHHHHHHHhccCc-------ccCCceEEEeecCC--hhhcCHHHHhhhhheeeeeCCChHHHHHHHH
Confidence 36778888777641 25777888887752 4457899999996 88888889999999998
Q ss_pred Hhc------CCHHHHHHHHHHcCCCCHHHHHH-HHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 256 IRL------MQTDGLRVLTKIALDTSLRYAIQ-LITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 256 ~Ra------i~deal~~La~~a~~Gd~R~AL~-lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
.-+ ++-. +++++..+.+-|.|+--. .|..|.--|..+++..|+.+|+++++..
T Consensus 295 ~y~k~~Plpv~~~-~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie~al~k 354 (368)
T COG1223 295 YYAKKFPLPVDAD-LRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKALKK 354 (368)
T ss_pred HHHHhCCCccccC-HHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHh
Confidence 655 4444 788888883448887654 4555554455577888999999999864
No 117
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.97 E-value=1.5e-08 Score=111.87 Aligned_cols=135 Identities=21% Similarity=0.284 Sum_probs=91.1
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEE----EEecCceeEeeccccCCC-CCCChhhhhhcc-cccCCCCC-H
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESEMSPVVI----TATNRGVTKIRGTAYSSP-HGIPIDLLDRMV-IIPTQPYQ-D 247 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~I----laT~~~i~lI~~Ttenp~-~~Ip~~lLSR~~-ii~~~pys-~ 247 (448)
..++|||||||+|+..+++.|+.++|+....+-- ..-...+.+|.++ ||. ..++.+|++|+. .+.+.+.. .
T Consensus 126 ~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~--np~eg~l~~~L~dR~~l~i~v~~~~~~ 203 (633)
T TIGR02442 126 HRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTM--NPEEGDLRPQLLDRFGLCVDVAAPRDP 203 (633)
T ss_pred CCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEec--CCCCCCCCHHHHhhcceEEEccCCCch
Confidence 3479999999999999999999999964211000 0001123444433 332 458999999995 34444332 2
Q ss_pred HHHHHHHHH-----------------------------hc------CCHHHHHHHHHHcC--CC-CHHHHHHHHHHHHHH
Q psy1686 248 EEIQAILKI-----------------------------RL------MQTDGLRVLTKIAL--DT-SLRYAIQLITTASVV 289 (448)
Q Consensus 248 ~eI~~IL~~-----------------------------Ra------i~deal~~La~~a~--~G-d~R~AL~lLe~a~~~ 289 (448)
++-.++++. |. ++++++++|+.++. +- +.|-.+.++..|..+
T Consensus 204 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~ 283 (633)
T TIGR02442 204 EERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARAL 283 (633)
T ss_pred HHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Confidence 332222211 11 79999999998852 22 699999999999877
Q ss_pred hhhhCCCcccHHHHHHHHHHhc
Q psy1686 290 CRRRKATEICMEDIRKVYALFL 311 (448)
Q Consensus 290 a~~~~~~~It~e~V~~~~~lf~ 311 (448)
|.-+++..|+.+||+++..+.+
T Consensus 284 AaL~gr~~V~~~Dv~~A~~lvL 305 (633)
T TIGR02442 284 AALDGRRRVTAEDVREAAELVL 305 (633)
T ss_pred HHHcCCCcCCHHHHHHHHHHHh
Confidence 7667889999999999998654
No 118
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.94 E-value=2.9e-08 Score=101.78 Aligned_cols=132 Identities=19% Similarity=0.213 Sum_probs=87.5
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEE----EEecCceeEeeccccCC-CCCCChhhhhhcc-cccCCCCCH-H
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVI----TATNRGVTKIRGTAYSS-PHGIPIDLLDRMV-IIPTQPYQD-E 248 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~I----laT~~~i~lI~~Ttenp-~~~Ip~~lLSR~~-ii~~~pys~-~ 248 (448)
.++||||||++|+...|+.|+.++|+....+-. ..-...+.+|. |.|| -..+|+++++||. .+.+.+-.. +
T Consensus 129 ~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviA--t~NP~e~~l~~aLldRF~~~v~v~~~~~~~ 206 (334)
T PRK13407 129 RGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVG--SGNPEEGELRPQLLDRFGLSVEVRSPRDVE 206 (334)
T ss_pred CCeEEecChHhCCHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEe--cCCcccCCCCHHHHhhcceEEEcCCCCcHH
Confidence 479999999999999999999999874200000 00001112222 2333 2348999999985 344433322 2
Q ss_pred HHHHHH-----------------------------HHhc------CCHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHh
Q psy1686 249 EIQAIL-----------------------------KIRL------MQTDGLRVLTKIA---LDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 249 eI~~IL-----------------------------~~Ra------i~deal~~La~~a---~~Gd~R~AL~lLe~a~~~a 290 (448)
+=.+++ ..|. ++++.+++|++++ ...+.|-.+.++..|...|
T Consensus 207 e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A 286 (334)
T PRK13407 207 TRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALA 286 (334)
T ss_pred HHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 222222 2221 8999999999884 2348999999999998888
Q ss_pred hhhCCCcccHHHHHHHHHH
Q psy1686 291 RRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 291 ~~~~~~~It~e~V~~~~~l 309 (448)
-.+|+..|+.+||+.+...
T Consensus 287 ~l~Gr~~V~~~Di~~~~~~ 305 (334)
T PRK13407 287 AFEGAEAVGRSHLRSVATM 305 (334)
T ss_pred HHcCCCeeCHHHHHHHHHH
Confidence 7788889999999988754
No 119
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.94 E-value=1.9e-08 Score=104.91 Aligned_cols=122 Identities=18% Similarity=0.252 Sum_probs=88.7
Q ss_pred eEEEEeccCCCCH------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhc---ccccCCCCCH
Q psy1686 177 GVLFIDEVHMLDI------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM---VIIPTQPYQD 247 (448)
Q Consensus 177 ~VLfIDEVH~L~~------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~---~ii~~~pys~ 247 (448)
++|+|||+|.+.. +.|+.|+..++.. .++ |++++.. .....++.+.+.||+ +++.++|++.
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~-~~i-iits~~~--------p~~l~~l~~~l~SRl~~g~~v~i~~pd~ 270 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENG-KQI-VLTSDRP--------PKELPGLEERLRSRFEWGLVVDIEPPDL 270 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCC-CCE-EEecCCC--------HHHHhhhhhhhhhhccCCeEEEeCCCCH
Confidence 7999999999843 2344455555531 233 3333331 011122456789998 4799999999
Q ss_pred HHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 248 EEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 248 ~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
++...||+.++ ++++++++|++.. .+|+|....+|.....+|.. .+..||.+.+++++...
T Consensus 271 ~~r~~il~~~~~~~~~~l~~e~l~~ia~~~-~~~~r~l~~~l~~l~~~a~~-~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 271 ETRLAILQKKAEEEGLELPDEVLEFIAKNI-RSNVRELEGALNRLLAYASL-TGKPITLELAKEALKDL 337 (405)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHh
Confidence 99999999877 9999999999998 99999988888887666643 34579999999988743
No 120
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.92 E-value=9.7e-09 Score=107.96 Aligned_cols=112 Identities=17% Similarity=0.269 Sum_probs=76.3
Q ss_pred cCeEEEEeccCCCCHH--------------HHHHHHHhhhhcC-------------CCeEEEEecCceeEeeccc-----
Q psy1686 175 VPGVLFIDEVHMLDIE--------------CFSFLNRALESEM-------------SPVVITATNRGVTKIRGTA----- 222 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~--------------~f~~Llk~lEe~~-------------~pi~IlaT~~~i~lI~~Tt----- 222 (448)
.++|+||||||.++.. .|++|++.+|... .+.+++.|+.-....+|+-
T Consensus 173 ~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~ 252 (412)
T PRK05342 173 QRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEK 252 (412)
T ss_pred CCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHH
Confidence 3699999999999753 8999999998642 1245555554322222220
Q ss_pred ----------------cC--------------------CCCCCChhhhhhcc-cccCCCCCHHHHHHHHHH---------
Q psy1686 223 ----------------YS--------------------SPHGIPIDLLDRMV-IIPTQPYQDEEIQAILKI--------- 256 (448)
Q Consensus 223 ----------------en--------------------p~~~Ip~~lLSR~~-ii~~~pys~~eI~~IL~~--------- 256 (448)
.. --|++.|+|+.|+- |+.|+||+.+++.+|+..
T Consensus 253 ~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~ 332 (412)
T PRK05342 253 IIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQY 332 (412)
T ss_pred HHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 00 01246899999995 889999999999999862
Q ss_pred --hc--------CCHHHHHHHHHHcC--CCCHHHHHHHHHHH
Q psy1686 257 --RL--------MQTDGLRVLTKIAL--DTSLRYAIQLITTA 286 (448)
Q Consensus 257 --Ra--------i~deal~~La~~a~--~Gd~R~AL~lLe~a 286 (448)
+. ++++++++|++.|. +..+|-.-.+++..
T Consensus 333 ~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~ 374 (412)
T PRK05342 333 QKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEI 374 (412)
T ss_pred HHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHH
Confidence 00 99999999999752 23555555555543
No 121
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.91 E-value=3.3e-08 Score=104.94 Aligned_cols=123 Identities=15% Similarity=0.309 Sum_probs=90.3
Q ss_pred CeEEEEeccCCCCH------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhc---ccccCCCCC
Q psy1686 176 PGVLFIDEVHMLDI------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM---VIIPTQPYQ 246 (448)
Q Consensus 176 ~~VLfIDEVH~L~~------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~---~ii~~~pys 246 (448)
.+||+|||+|.+.. +.|..++..+++ -. .+|++++. ..+....+.+.|.||| +++.++|++
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~-~k-~IIlts~~--------~p~~l~~l~~rL~SR~~~Gl~~~l~~pd 272 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTE-GK-LIVISSTC--------APQDLKAMEERLISRFEWGIAIPLHPLT 272 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHC-CC-cEEEecCC--------CHHHHhhhHHHHHhhhcCCeEEecCCCC
Confidence 48999999999953 234444444442 12 23333332 1222345678999999 799999999
Q ss_pred HHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHH---HHhhhhCCCcccHHHHHHHHHHh
Q psy1686 247 DEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTAS---VVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 247 ~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~---~~a~~~~~~~It~e~V~~~~~lf 310 (448)
.++...||+.++ ++++++++|+... .+|+|...+.|.... .++. -.+..||.+.+++++.-+
T Consensus 273 ~e~r~~iL~~k~~~~~~~l~~evl~~la~~~-~~dir~L~g~l~~l~~~~a~~~-~~~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 273 KEGLRSFLERKAEALSIRIEETALDFLIEAL-SSNVKSLLHALTLLAKRVAYKK-LSHQLLYVDDIKALLHDV 343 (445)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHH-hhCCCCCHHHHHHHHHHh
Confidence 999999999777 9999999999998 899999999999885 2332 233579999999988743
No 122
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.88 E-value=7.9e-09 Score=117.04 Aligned_cols=120 Identities=23% Similarity=0.187 Sum_probs=92.6
Q ss_pred CCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCH--------HHHHHHHHhhhhcCCCeEEEEecCceeEeec
Q psy1686 149 GEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDI--------ECFSFLNRALESEMSPVVITATNRGVTKIRG 220 (448)
Q Consensus 149 ~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~--------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~ 220 (448)
+|.-+.+++.++.+. ..+ +.||||||+|.|.. ++.+.|.++++ .+.+.+|++
T Consensus 254 ge~e~rl~~i~~~~~----~~~-----~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~-----------rg~l~~Iga 313 (821)
T CHL00095 254 GEFEERLKRIFDEIQ----ENN-----NIILVIDEVHTLIGAGAAEGAIDAANILKPALA-----------RGELQCIGA 313 (821)
T ss_pred cHHHHHHHHHHHHHH----hcC-----CeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh-----------CCCcEEEEe
Confidence 444456666665542 122 47999999999843 45777877777 578899999
Q ss_pred cccCCC---CCCChhhhhhcccccCCCCCHHHHHHHHHHhc----------CCHHHHHHHHHHcCCC---C---HHHHHH
Q psy1686 221 TAYSSP---HGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----------MQTDGLRVLTKIALDT---S---LRYAIQ 281 (448)
Q Consensus 221 Ttenp~---~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----------i~deal~~La~~a~~G---d---~R~AL~ 281 (448)
||..++ +...+.|.+||..+.+.+.+.++...|++.-. ++++++..++++| ++ | ++.|+.
T Consensus 314 Tt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls-~~yi~~r~lPdkaid 392 (821)
T CHL00095 314 TTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLS-DQYIADRFLPDKAID 392 (821)
T ss_pred CCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-hccCccccCchHHHH
Confidence 997665 66788999999999999999999988886311 8999999999998 43 4 889999
Q ss_pred HHHHHHHH
Q psy1686 282 LITTASVV 289 (448)
Q Consensus 282 lLe~a~~~ 289 (448)
+|+.|+..
T Consensus 393 lld~a~a~ 400 (821)
T CHL00095 393 LLDEAGSR 400 (821)
T ss_pred HHHHHHHH
Confidence 99998653
No 123
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.85 E-value=3e-08 Score=111.26 Aligned_cols=123 Identities=22% Similarity=0.281 Sum_probs=94.7
Q ss_pred CeEEEEeccCCCC---------HHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCC---CCCCChhhhhhcccccCC
Q psy1686 176 PGVLFIDEVHMLD---------IECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSS---PHGIPIDLLDRMVIIPTQ 243 (448)
Q Consensus 176 ~~VLfIDEVH~L~---------~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp---~~~Ip~~lLSR~~ii~~~ 243 (448)
++||||||||.|- .+..+.|.++++ .+.+.+|++||... ++...++|.+||..|.+.
T Consensus 279 ~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-----------~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ 347 (758)
T PRK11034 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-----------SGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDIT 347 (758)
T ss_pred CCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-----------CCCeEEEecCChHHHHHHhhccHHHHhhCcEEEeC
Confidence 5899999999981 244566777766 57788999998654 467899999999999999
Q ss_pred CCCHHHHHHHHHHhc----------CCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHHhh----hhCCCcccHHHHH
Q psy1686 244 PYQDEEIQAILKIRL----------MQTDGLRVLTKIALD-----TSLRYAIQLITTASVVCR----RRKATEICMEDIR 304 (448)
Q Consensus 244 pys~~eI~~IL~~Ra----------i~deal~~La~~a~~-----Gd~R~AL~lLe~a~~~a~----~~~~~~It~e~V~ 304 (448)
+.+.++..+||+... |+++|+..+++++.. .=+..|+.+|+.|+.... ......|+.++|.
T Consensus 348 ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~ 427 (758)
T PRK11034 348 EPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIE 427 (758)
T ss_pred CCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccCcccccccccChhhHH
Confidence 999999999998422 999999988887633 234499999999864321 1123468999999
Q ss_pred HHHHH
Q psy1686 305 KVYAL 309 (448)
Q Consensus 305 ~~~~l 309 (448)
++++.
T Consensus 428 ~v~~~ 432 (758)
T PRK11034 428 SVVAR 432 (758)
T ss_pred HHHHH
Confidence 98864
No 124
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.85 E-value=6.1e-08 Score=101.03 Aligned_cols=123 Identities=28% Similarity=0.308 Sum_probs=89.3
Q ss_pred CeEEEEeccCCC-----------CHHHHHHHHHhhhhcC-----CC-eEEEEecCceeEeeccccCCCCCCChhhhh--h
Q psy1686 176 PGVLFIDEVHML-----------DIECFSFLNRALESEM-----SP-VVITATNRGVTKIRGTAYSSPHGIPIDLLD--R 236 (448)
Q Consensus 176 ~~VLfIDEVH~L-----------~~~~f~~Llk~lEe~~-----~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R 236 (448)
|+|+||||+|.| +.+.+..|+..+.+-. .+ .||.+||. +..++++++. |
T Consensus 225 p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~------------~~~ld~allRpgR 292 (389)
T PRK03992 225 PSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNR------------IDILDPAILRPGR 292 (389)
T ss_pred CeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCC------------hhhCCHHHcCCcc
Confidence 689999999998 2445555655554321 12 34444443 5678899885 6
Q ss_pred cc-cccCCCCCHHHHHHHHHHhc----CCH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 237 MV-IIPTQPYQDEEIQAILKIRL----MQT-DGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 237 ~~-ii~~~pys~~eI~~IL~~Ra----i~d-eal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
+- .+.+.+++.++-.+|++... +++ --+..|++.+.+-+.++.-.+...|...|..++...|+.+|+.+++...
T Consensus 293 fd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~ 372 (389)
T PRK03992 293 FDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKV 372 (389)
T ss_pred CceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 63 79999999999999998654 433 3467788887333888888889999888876677789999999998754
No 125
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.84 E-value=6e-08 Score=103.05 Aligned_cols=123 Identities=16% Similarity=0.293 Sum_probs=89.6
Q ss_pred CeEEEEeccCCCC--H----HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhc---ccccCCCCC
Q psy1686 176 PGVLFIDEVHMLD--I----ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM---VIIPTQPYQ 246 (448)
Q Consensus 176 ~~VLfIDEVH~L~--~----~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~---~ii~~~pys 246 (448)
.++|+|||+|.+. . +-|..++..++. -. .+|+++++.-. + -..+-+.|.||+ +++.++|++
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~-~k-~iIltsd~~P~------~--l~~l~~rL~SR~~~Gl~~~L~~pd 276 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIEN-DK-QLFFSSDKSPE------L--LNGFDNRLITRFNMGLSIAIQKLD 276 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHc-CC-cEEEECCCCHH------H--HhhccHHHHHHHhCCceeccCCcC
Confidence 4799999999995 2 234444444443 12 33444444100 0 012457899998 499999999
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhC-CCcccHHHHHHHHHH
Q psy1686 247 DEEIQAILKIRL--------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRK-ATEICMEDIRKVYAL 309 (448)
Q Consensus 247 ~~eI~~IL~~Ra--------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~-~~~It~e~V~~~~~l 309 (448)
.++..+||+.++ ++++++++|++.+ +||+|.++++|.++...+.... +..||.+.|++++.-
T Consensus 277 ~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~-~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~ 347 (450)
T PRK14087 277 NKTATAIIKKEIKNQNIKQEVTEEAINFISNYY-SDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRD 347 (450)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhh
Confidence 999999998655 8899999999999 9999999999999875554321 357999999998864
No 126
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.81 E-value=3.5e-08 Score=111.81 Aligned_cols=96 Identities=19% Similarity=0.260 Sum_probs=71.4
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC-----------C-CeEEEEecCceeEeec--------ccc----CCC-----
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM-----------S-PVVITATNRGVTKIRG--------TAY----SSP----- 226 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~-----------~-pi~IlaT~~~i~lI~~--------Tte----np~----- 226 (448)
+.|+++|||+..+++.+++|++++|+.. . .+||+.||-+...|.. ++. ...
T Consensus 612 ~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~ 691 (821)
T CHL00095 612 YTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLS 691 (821)
T ss_pred CeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHH
Confidence 3899999999999999999999999842 2 2788888876533211 000 000
Q ss_pred --------CCCChhhhhhc-ccccCCCCCHHHHHHHHHHhc---------------CCHHHHHHHHHHc
Q psy1686 227 --------HGIPIDLLDRM-VIIPTQPYQDEEIQAILKIRL---------------MQTDGLRVLTKIA 271 (448)
Q Consensus 227 --------~~Ip~~lLSR~-~ii~~~pys~~eI~~IL~~Ra---------------i~deal~~La~~a 271 (448)
...+|+|++|+ .||.|+||+.+++.+|++... ++++++++|++.+
T Consensus 692 ~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~ 760 (821)
T CHL00095 692 NLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEG 760 (821)
T ss_pred HHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhc
Confidence 01468999999 799999999999999987321 7888888887765
No 127
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.75 E-value=8.3e-08 Score=109.16 Aligned_cols=111 Identities=17% Similarity=0.309 Sum_probs=85.3
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC-----------C-CeEEEEecCceeEeeccccC----CC-------------
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM-----------S-PVVITATNRGVTKIRGTAYS----SP------------- 226 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~-----------~-pi~IlaT~~~i~lI~~Tten----p~------------- 226 (448)
+.|+++|||+..+++.++.|+..+++.. . .+||+.||-+...+.....+ |-
T Consensus 669 ~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (852)
T TIGR03345 669 YSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELL 748 (852)
T ss_pred CcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHH
Confidence 4899999999999999999999998774 2 37778878655322111000 10
Q ss_pred CCCChhhhhhcccccCCCCCHHHHHHHHHHhc----------------CCHHHHHHHHHHcCCC---CHHHHHHHHHHHH
Q psy1686 227 HGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----------------MQTDGLRVLTKIALDT---SLRYAIQLITTAS 287 (448)
Q Consensus 227 ~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----------------i~deal~~La~~a~~G---d~R~AL~lLe~a~ 287 (448)
...+++|++||.+|.|+||+.+++.+|++... ++++++++|++.+ .+ ++|-..++|+.-.
T Consensus 749 ~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g-~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 749 KVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARC-TEVESGARNIDAILNQTL 827 (852)
T ss_pred HhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHc-CCCCCChHHHHHHHHHHH
Confidence 11579999999999999999999988876311 9999999999998 44 8999988888654
No 128
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.75 E-value=3.1e-07 Score=98.16 Aligned_cols=116 Identities=18% Similarity=0.223 Sum_probs=88.6
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhcC-----------CCeEEEEecCceeEeeccccCCCCCCCh------hhhhhcc-
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESEM-----------SPVVITATNRGVTKIRGTAYSSPHGIPI------DLLDRMV- 238 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~~-----------~pi~IlaT~~~i~lI~~Ttenp~~~Ip~------~lLSR~~- 238 (448)
.++|+|||+++++..|+.|+.+++|-. .|.++.|||. +|. ++++|++
T Consensus 109 ~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~---------------LPE~g~~leAL~DRFli 173 (498)
T PRK13531 109 EIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE---------------LPEADSSLEALYDRMLI 173 (498)
T ss_pred cEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC---------------CcccCCchHHhHhhEEE
Confidence 589999999999999999999997643 2355555543 564 8999996
Q ss_pred cccCCCCC-HHHHHHHHHHh-----c------------------------CCHHHHHHHHHHc-----CC----CCHHHH
Q psy1686 239 IIPTQPYQ-DEEIQAILKIR-----L------------------------MQTDGLRVLTKIA-----LD----TSLRYA 279 (448)
Q Consensus 239 ii~~~pys-~~eI~~IL~~R-----a------------------------i~deal~~La~~a-----~~----Gd~R~A 279 (448)
-+.+.|++ .++..++|... . ++++++++|.++. .+ -|.|..
T Consensus 174 ri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~ 253 (498)
T PRK13531 174 RLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRW 253 (498)
T ss_pred EEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHH
Confidence 46777776 35546666421 0 8899999998884 12 489999
Q ss_pred HHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 280 IQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 280 L~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+.++..+...|.-.|+..|+.+||. ++.
T Consensus 254 ~~l~~~akA~A~l~GR~~V~p~Dv~-ll~ 281 (498)
T PRK13531 254 KKAIRLLQASAFFSGRDAIAPIDLI-LLK 281 (498)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHH-HhH
Confidence 9999998887877889999999999 543
No 129
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.74 E-value=1.3e-07 Score=100.09 Aligned_cols=121 Identities=21% Similarity=0.277 Sum_probs=89.4
Q ss_pred CeEEEEeccCCCC-H-----HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCC--CCChhhhhhcc---cccCCC
Q psy1686 176 PGVLFIDEVHMLD-I-----ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPH--GIPIDLLDRMV---IIPTQP 244 (448)
Q Consensus 176 ~~VLfIDEVH~L~-~-----~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~--~Ip~~lLSR~~---ii~~~p 244 (448)
+++|+|||+|.+. + +.|..++..++.. . .+|++++. .|.. .+.+.+.||+. ++.++|
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~-k-~iIitsd~----------~p~~l~~l~~rL~SR~~~gl~v~i~~ 262 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSG-K-QIVICSDR----------EPQKLSEFQDRLVSRFQMGLVAKLEP 262 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcC-C-eEEEECCC----------CHHHHHHHHHHHhhHHhcCceEeeCC
Confidence 4899999999883 2 3455555555531 1 23333322 1111 24567899986 999999
Q ss_pred CCHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 245 YQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 245 ys~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
++.+....||+.++ ++++++++|++.. .||+|....+|.....++.. .+..||.+.+++++.-+
T Consensus 263 pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~-~~~~R~L~g~l~~l~~~~~~-~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 263 PDEETRKKIARKMLEIEHGELPEEVLNFVAENV-DDNLRRLRGAIIKLLVYKET-TGEEVDLKEAILLLKDF 332 (440)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcc-ccCHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHH
Confidence 99999999999766 9999999999999 99999999999988666543 34579999999998744
No 130
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.72 E-value=2.7e-07 Score=94.96 Aligned_cols=123 Identities=28% Similarity=0.290 Sum_probs=86.7
Q ss_pred cCeEEEEeccCCCC-----------HHHHHHHHHhhhh---c--CCC-eEEEEecCceeEeeccccCCCCCCChhhhh--
Q psy1686 175 VPGVLFIDEVHMLD-----------IECFSFLNRALES---E--MSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLD-- 235 (448)
Q Consensus 175 ~~~VLfIDEVH~L~-----------~~~f~~Llk~lEe---~--~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS-- 235 (448)
.|.|+||||+|.|. .+.+..|+..+.+ . ..+ .||++||. +..++++++.
T Consensus 215 ~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~------------~~~ld~al~r~g 282 (364)
T TIGR01242 215 APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNR------------PDILDPALLRPG 282 (364)
T ss_pred CCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCC------------hhhCChhhcCcc
Confidence 36899999999983 3344445444432 1 123 34444444 5678888884
Q ss_pred hc-ccccCCCCCHHHHHHHHHHhc----CCH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 236 RM-VIIPTQPYQDEEIQAILKIRL----MQT-DGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 236 R~-~ii~~~pys~~eI~~IL~~Ra----i~d-eal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
|+ ..+.+.+++.++-.+|++... +.+ --++.|++.+.+-+.++.-++...|...|..+++..|+.+|+.+++..
T Consensus 283 rfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 283 RFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEK 362 (364)
T ss_pred cCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Confidence 55 378999999999999988644 333 247788888833377787788888888887677788999999998864
No 131
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.69 E-value=4.4e-07 Score=95.17 Aligned_cols=125 Identities=22% Similarity=0.232 Sum_probs=87.4
Q ss_pred cCeEEEEeccCCCC-----------HHHHHHHH---HhhhhcCC--C-eEEEEecCceeEeeccccCCCCCCChhhhh--
Q psy1686 175 VPGVLFIDEVHMLD-----------IECFSFLN---RALESEMS--P-VVITATNRGVTKIRGTAYSSPHGIPIDLLD-- 235 (448)
Q Consensus 175 ~~~VLfIDEVH~L~-----------~~~f~~Ll---k~lEe~~~--p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS-- 235 (448)
.|.|+||||++.+. .+.+..+. ..++.... + .+|++||. +..++++++.
T Consensus 238 ~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~------------~d~LDpAllR~G 305 (398)
T PTZ00454 238 APSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNR------------ADTLDPALLRPG 305 (398)
T ss_pred CCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCC------------chhCCHHHcCCC
Confidence 37999999999872 23333333 33433211 2 45555554 6789999886
Q ss_pred hcc-cccCCCCCHHHHHHHHHHhc----CCHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 236 RMV-IIPTQPYQDEEIQAILKIRL----MQTD-GLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 236 R~~-ii~~~pys~~eI~~IL~~Ra----i~de-al~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
|+- .|.|.+++.++-.+|++... ++++ -++.+++.+.+-+.++--++...|...|..++...|+.+|+.+++..
T Consensus 306 Rfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~ 385 (398)
T PTZ00454 306 RLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKT 385 (398)
T ss_pred cccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 553 68999999998777777432 3332 36677888744499999999999988887677778999999999876
Q ss_pred hc
Q psy1686 310 FL 311 (448)
Q Consensus 310 f~ 311 (448)
..
T Consensus 386 v~ 387 (398)
T PTZ00454 386 VV 387 (398)
T ss_pred HH
Confidence 43
No 132
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.68 E-value=1.3e-07 Score=106.21 Aligned_cols=96 Identities=18% Similarity=0.264 Sum_probs=71.1
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC-----------C-CeEEEEecCceeE-----eeccccCC--------CCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM-----------S-PVVITATNRGVTK-----IRGTAYSS--------PHGIP 230 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~-----------~-pi~IlaT~~~i~l-----I~~Ttenp--------~~~Ip 230 (448)
++|+|+||||.++++.|+.|++.+++.. . .+||++||.+... +|-....+ -...+
T Consensus 558 ~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~ 637 (758)
T PRK11034 558 HAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFT 637 (758)
T ss_pred CcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcC
Confidence 4899999999999999999999999652 1 2678888855311 11110000 12367
Q ss_pred hhhhhhcc-cccCCCCCHHHHHHHHHHhc---------------CCHHHHHHHHHHc
Q psy1686 231 IDLLDRMV-IIPTQPYQDEEIQAILKIRL---------------MQTDGLRVLTKIA 271 (448)
Q Consensus 231 ~~lLSR~~-ii~~~pys~~eI~~IL~~Ra---------------i~deal~~La~~a 271 (448)
|+|+.|+- ++.|.|++.+++.+|++... ++++++++|++.+
T Consensus 638 pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~ 694 (758)
T PRK11034 638 PEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKG 694 (758)
T ss_pred HHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhC
Confidence 99999996 99999999999999887422 7888888888765
No 133
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.67 E-value=2e-07 Score=98.87 Aligned_cols=124 Identities=22% Similarity=0.243 Sum_probs=87.4
Q ss_pred cCeEEEEeccCCCC-----------HHHHHHHH---HhhhhcC---CCeEEEEecCceeEeeccccCCCCCCChhhhh--
Q psy1686 175 VPGVLFIDEVHMLD-----------IECFSFLN---RALESEM---SPVVITATNRGVTKIRGTAYSSPHGIPIDLLD-- 235 (448)
Q Consensus 175 ~~~VLfIDEVH~L~-----------~~~f~~Ll---k~lEe~~---~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS-- 235 (448)
.|.|+|||||+.+. .+.+..|+ ..++... .-.||+|||. +..++++++.
T Consensus 276 ~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr------------~d~LDpaLlRpG 343 (438)
T PTZ00361 276 APSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNR------------IESLDPALIRPG 343 (438)
T ss_pred CCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCC------------hHHhhHHhccCC
Confidence 36899999999873 12233333 3333211 1255566665 6678888874
Q ss_pred hcc-cccCCCCCHHHHHHHHHHhc----CCHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 236 RMV-IIPTQPYQDEEIQAILKIRL----MQTDG-LRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 236 R~~-ii~~~pys~~eI~~IL~~Ra----i~dea-l~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
|+- .|.|.+++.++..+|++... +++++ ++.++..+.+-+..+.-+++..|...|..+++..|+.+|+.+++..
T Consensus 344 Rfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~ 423 (438)
T PTZ00361 344 RIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEK 423 (438)
T ss_pred eeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHH
Confidence 663 89999999999999998654 44443 5667777644588888888888988887777788999999999875
Q ss_pred h
Q psy1686 310 F 310 (448)
Q Consensus 310 f 310 (448)
.
T Consensus 424 v 424 (438)
T PTZ00361 424 V 424 (438)
T ss_pred H
Confidence 3
No 134
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.66 E-value=6.4e-07 Score=96.22 Aligned_cols=221 Identities=21% Similarity=0.199 Sum_probs=135.1
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHH-----HhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCcc
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGM-----IKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLA 102 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~m-----I~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~ 102 (448)
++-+...|...++++.|.+.+.+...-.... -+.|--..--+.++|||.+|||. |+.. |.+++.
T Consensus 216 ~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkai-------A~e~~~--- 285 (489)
T CHL00195 216 EILEFYSVNEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAI-------ANDWQL--- 285 (489)
T ss_pred ccccccCCCCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHH-------HHHhCC---
Confidence 3444555666689999998887543221111 11121111127789999558874 5533 222221
Q ss_pred CCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEe
Q psy1686 103 DVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFID 182 (448)
Q Consensus 103 ~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfID 182 (448)
.|.. +|+. .++++-.+|=...+|+.+..+.. ..|.|+|||
T Consensus 286 ---~~~~--------------------l~~~--------~l~~~~vGese~~l~~~f~~A~~---------~~P~IL~ID 325 (489)
T CHL00195 286 ---PLLR--------------------LDVG--------KLFGGIVGESESRMRQMIRIAEA---------LSPCILWID 325 (489)
T ss_pred ---CEEE--------------------EEhH--------HhcccccChHHHHHHHHHHHHHh---------cCCcEEEeh
Confidence 3333 2221 12333333333567666654321 147999999
Q ss_pred ccCCCCH------------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhh--hcc-cccCCCCCH
Q psy1686 183 EVHMLDI------------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-IIPTQPYQD 247 (448)
Q Consensus 183 EVH~L~~------------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-ii~~~pys~ 247 (448)
||+.+.. ..++.|+..+++...|+|+++|+. .+..+|++++. |+- +|.+...+.
T Consensus 326 EID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN-----------~~~~Ld~allR~GRFD~~i~v~lP~~ 394 (489)
T CHL00195 326 EIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATAN-----------NIDLLPLEILRKGRFDEIFFLDLPSL 394 (489)
T ss_pred hhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecC-----------ChhhCCHHHhCCCcCCeEEEeCCcCH
Confidence 9997622 245667777777666766555543 26779999985 774 788888888
Q ss_pred HHHHHHHHHhc-------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhc
Q psy1686 248 EEIQAILKIRL-------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFL 311 (448)
Q Consensus 248 ~eI~~IL~~Ra-------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~ 311 (448)
++-.+|++... .++.-++.|++.+.+-+.++--++...|...|..+ +..++.+|+..++..+.
T Consensus 395 ~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~-~~~lt~~dl~~a~~~~~ 464 (489)
T CHL00195 395 EEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYE-KREFTTDDILLALKQFI 464 (489)
T ss_pred HHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc-CCCcCHHHHHHHHHhcC
Confidence 88888887433 23455888999984447777777777777666533 45799999999987654
No 135
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.65 E-value=4.9e-07 Score=94.75 Aligned_cols=226 Identities=18% Similarity=0.207 Sum_probs=143.1
Q ss_pred cCccCCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcchhhhhhhccCccccccCCCcc
Q psy1686 23 SHIRGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKVKKISTATGREEEPDYDGWLA 102 (448)
Q Consensus 23 sHi~glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt~~I~~~~gk~~a~~~d~~~~ 102 (448)
....-+++...+.|++.|+.||.=..-+-|.......-++.--+.+|+.+||+...|||= ...+-|. .... .+
T Consensus 69 ~~~~q~~~~~~l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTH--Ll~Aign----~~~~-~~ 141 (408)
T COG0593 69 SAPAQLPLPSGLNPKYTFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTH--LLQAIGN----EALA-NG 141 (408)
T ss_pred ccccccCccccCCCCCchhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHH--HHHHHHH----HHHh-hC
Confidence 334455665678899999999987777666655555544322245677899987337752 1111110 0000 11
Q ss_pred CCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHH-HHHHHHHHHHHhCcccccCeEEEE
Q psy1686 103 DVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVRE-QISAKVTEWREEGKAEIVPGVLFI 181 (448)
Q Consensus 103 ~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~-~I~~~v~~~~~~g~~~i~~~VLfI 181 (448)
++..+++. +--|..|.- + ..+|+ .+++-. +.| .-++++|
T Consensus 142 ~~a~v~y~-----------------~se~f~~~~---v------------~a~~~~~~~~Fk-------~~y-~~dlllI 181 (408)
T COG0593 142 PNARVVYL-----------------TSEDFTNDF---V------------KALRDNEMEKFK-------EKY-SLDLLLI 181 (408)
T ss_pred CCceEEec-----------------cHHHHHHHH---H------------HHHHhhhHHHHH-------Hhh-ccCeeee
Confidence 22233330 000000000 1 12222 122211 122 2378999
Q ss_pred eccCCCCH------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCC---hhhhhhc---ccccCCCCCHHH
Q psy1686 182 DEVHMLDI------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIP---IDLLDRM---VIIPTQPYQDEE 249 (448)
Q Consensus 182 DEVH~L~~------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip---~~lLSR~---~ii~~~pys~~e 249 (448)
|+++.|.. +-|+.+|...+..- .++++.++ ||..++ +.|.||+ +++.+.|.+.+.
T Consensus 182 DDiq~l~gk~~~qeefFh~FN~l~~~~k--qIvltsdr-----------~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~ 248 (408)
T COG0593 182 DDIQFLAGKERTQEEFFHTFNALLENGK--QIVLTSDR-----------PPKELNGLEDRLRSRLEWGLVVEIEPPDDET 248 (408)
T ss_pred chHhHhcCChhHHHHHHHHHHHHHhcCC--EEEEEcCC-----------CchhhccccHHHHHHHhceeEEeeCCCCHHH
Confidence 99999943 56888888888522 33333332 466665 7899997 599999999999
Q ss_pred HHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 250 IQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 250 I~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
...||..++ ++++++++|++.- ..|+|....+|++...+|.. .+..||.+.|++++.-+
T Consensus 249 r~aiL~kka~~~~~~i~~ev~~~la~~~-~~nvReLegaL~~l~~~a~~-~~~~iTi~~v~e~L~~~ 313 (408)
T COG0593 249 RLAILRKKAEDRGIEIPDEVLEFLAKRL-DRNVRELEGALNRLDAFALF-TKRAITIDLVKEILKDL 313 (408)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHh-cCccCcHHHHHHHHHHh
Confidence 999999766 9999999999998 88999999999998877653 34489999999998754
No 136
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.64 E-value=2.7e-07 Score=103.46 Aligned_cols=96 Identities=17% Similarity=0.316 Sum_probs=70.6
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC-----------C-CeEEEEecCceeEeec-----cccCC--------CCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM-----------S-PVVITATNRGVTKIRG-----TAYSS--------PHGIP 230 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~-----------~-pi~IlaT~~~i~lI~~-----Ttenp--------~~~Ip 230 (448)
++|+|+||||.++++.++.|++.+++.. . .+||++||-+...+.. ..+.+ -...+
T Consensus 554 ~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~ 633 (731)
T TIGR02639 554 HCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFS 633 (731)
T ss_pred CeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcC
Confidence 4899999999999999999999999752 2 2577777665322211 00100 11257
Q ss_pred hhhhhhcc-cccCCCCCHHHHHHHHHHhc---------------CCHHHHHHHHHHc
Q psy1686 231 IDLLDRMV-IIPTQPYQDEEIQAILKIRL---------------MQTDGLRVLTKIA 271 (448)
Q Consensus 231 ~~lLSR~~-ii~~~pys~~eI~~IL~~Ra---------------i~deal~~La~~a 271 (448)
|+|++|+- +|.|+||+.+++.+|++... ++++++++|++.+
T Consensus 634 pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~ 690 (731)
T TIGR02639 634 PEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKG 690 (731)
T ss_pred hHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhC
Confidence 89999995 99999999999999987421 7888888888765
No 137
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.63 E-value=4.5e-07 Score=95.47 Aligned_cols=112 Identities=21% Similarity=0.333 Sum_probs=77.0
Q ss_pred cCeEEEEeccCCCCH--------------HHHHHHHHhhhhcC-------------CCeEEEEecCceeEe-ecc-----
Q psy1686 175 VPGVLFIDEVHMLDI--------------ECFSFLNRALESEM-------------SPVVITATNRGVTKI-RGT----- 221 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~--------------~~f~~Llk~lEe~~-------------~pi~IlaT~~~i~lI-~~T----- 221 (448)
.++|+||||||.+.+ ..|+.|++.+|... .+.+++.|.. +.+| +|+
T Consensus 181 ~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsN-ilfi~~Gaf~g~~ 259 (413)
T TIGR00382 181 QKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSN-ILFICGGAFVGLE 259 (413)
T ss_pred ccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCC-ceeeecccccChH
Confidence 358999999999976 68999999997543 1234444443 2111 110
Q ss_pred ----------------c-cC-C----------------CCCCChhhhhhcc-cccCCCCCHHHHHHHHHHh----c----
Q psy1686 222 ----------------A-YS-S----------------PHGIPIDLLDRMV-IIPTQPYQDEEIQAILKIR----L---- 258 (448)
Q Consensus 222 ----------------t-en-p----------------~~~Ip~~lLSR~~-ii~~~pys~~eI~~IL~~R----a---- 258 (448)
+ .. . -|+++|+|+.|+- |+.|+||+.+++.+|+... .
T Consensus 260 ~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~ 339 (413)
T TIGR00382 260 KIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQ 339 (413)
T ss_pred HHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 0 2357899999994 8899999999999998641 0
Q ss_pred -----------CCHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Q psy1686 259 -----------MQTDGLRVLTKIAL--DTSLRYAIQLITTAS 287 (448)
Q Consensus 259 -----------i~deal~~La~~a~--~Gd~R~AL~lLe~a~ 287 (448)
++++|+++|++.|. ...+|-.-.+++...
T Consensus 340 ~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l 381 (413)
T TIGR00382 340 ALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLL 381 (413)
T ss_pred HHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhh
Confidence 89999999999863 336666666666554
No 138
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.56 E-value=4.7e-07 Score=87.31 Aligned_cols=106 Identities=19% Similarity=0.271 Sum_probs=71.7
Q ss_pred CeEEEEeccCCCCHHH--HHHHHHhhhhcC--CCeEEEEecCceeEeeccccCCCCCCChhhhhhc---ccccCCCCCHH
Q psy1686 176 PGVLFIDEVHMLDIEC--FSFLNRALESEM--SPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM---VIIPTQPYQDE 248 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~--f~~Llk~lEe~~--~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~---~ii~~~pys~~ 248 (448)
.++|+||++|.+.... +..|...++... ...+|++++. ...-.-.+.++|.||+ +++.++|.+.+
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~--------~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~ 169 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDR--------PPSELSGLLPDLRSRLSWGLVVELQPPDDE 169 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS---------TTTTTTS-HHHHHHHHCSEEEEE----HH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCC--------CCccccccChhhhhhHhhcchhhcCCCCHH
Confidence 3899999999996532 444444444322 1233333333 1111224678999997 49999999999
Q ss_pred HHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy1686 249 EIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 249 eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a 290 (448)
+..+||+.++ ++++++++|++.. .+|+|....+|.+...++
T Consensus 170 ~r~~il~~~a~~~~~~l~~~v~~~l~~~~-~~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 170 DRRRILQKKAKERGIELPEEVIEYLARRF-RRDVRELEGALNRLDAYA 216 (219)
T ss_dssp HHHHHHHHHHHHTT--S-HHHHHHHHHHT-TSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHhh-cCCHHHHHHHHHHHHHHh
Confidence 9999999777 9999999999998 899999999999876654
No 139
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.55 E-value=1.1e-06 Score=96.43 Aligned_cols=123 Identities=15% Similarity=0.203 Sum_probs=92.5
Q ss_pred CeEEEEeccCCCCH------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhc---ccccCCCCC
Q psy1686 176 PGVLFIDEVHMLDI------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM---VIIPTQPYQ 246 (448)
Q Consensus 176 ~~VLfIDEVH~L~~------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~---~ii~~~pys 246 (448)
.+||+|||+|.+.. +.|+.++..++.. .+ +|++++.. ....-.+.+.|.||+ +++.+++.+
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~g-k~-IIITSd~~--------P~eL~~l~~rL~SRf~~GLvv~I~~PD 447 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNAN-KQ-IVLSSDRP--------PKQLVTLEDRLRNRFEWGLITDVQPPE 447 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcC-CC-EEEecCCC--------hHhhhhccHHHHhhhhcCceEEcCCCC
Confidence 48999999999932 4567777766631 22 33344431 011123678899998 599999999
Q ss_pred HHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 247 DEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 247 ~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
.+....||+.++ ++++++++|++.. .+|+|....+|.+...++.. .+..||.+.+++++..+
T Consensus 448 ~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~-~rnvR~LegaL~rL~a~a~~-~~~~itl~la~~vL~~~ 515 (617)
T PRK14086 448 LETRIAILRKKAVQEQLNAPPEVLEFIASRI-SRNIRELEGALIRVTAFASL-NRQPVDLGLTEIVLRDL 515 (617)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHh-hCCCCCHHHHHHHHHHh
Confidence 999999999777 9999999999998 88999999999988666643 34579999999988754
No 140
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.54 E-value=6.7e-07 Score=101.89 Aligned_cols=111 Identities=23% Similarity=0.312 Sum_probs=80.4
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhcC-----------C-CeEEEEecCceeEeeccccC-------------CCCCCCh
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESEM-----------S-PVVITATNRGVTKIRGTAYS-------------SPHGIPI 231 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~~-----------~-pi~IlaT~~~i~lI~~Tten-------------p~~~Ip~ 231 (448)
.|+|+|||+.++++.++.|+.++++.. . .+||++||-+...+.....+ -....++
T Consensus 669 ~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~p 748 (852)
T TIGR03346 669 SVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRP 748 (852)
T ss_pred cEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCH
Confidence 699999999999999999999998863 2 36777777654322110000 0122578
Q ss_pred hhhhhc-ccccCCCCCHHHHHHHHHHhc---------------CCHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Q psy1686 232 DLLDRM-VIIPTQPYQDEEIQAILKIRL---------------MQTDGLRVLTKIAL--DTSLRYAIQLITTAS 287 (448)
Q Consensus 232 ~lLSR~-~ii~~~pys~~eI~~IL~~Ra---------------i~deal~~La~~a~--~Gd~R~AL~lLe~a~ 287 (448)
+|+.|+ .++.|.|++.+++.+|+.... ++++++++|++.+. .+++|.--+.++...
T Consensus 749 el~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 749 EFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred HHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence 999999 599999999999998877311 78888888888764 567777666666543
No 141
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.54 E-value=1.5e-06 Score=97.48 Aligned_cols=207 Identities=18% Similarity=0.234 Sum_probs=123.7
Q ss_pred ccccccccccchhhhhhhHHHHHHHhc-----------C--CCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCc
Q psy1686 36 PRKVSQGMVGQLQARRAAGVVLGMIKE-----------E--VVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWL 101 (448)
Q Consensus 36 p~~~~~~~VGQ~~~r~a~~~l~~mI~~-----------~--ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~ 101 (448)
|...++++.|++.+++. |.+++.. | .-.| +.++|||..|||+ ++..+ .+.+
T Consensus 448 ~~~~~~di~g~~~~k~~---l~~~v~~~~~~~~~~~~~g~~~~~g--iLL~GppGtGKT~lakalA-------~e~~--- 512 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQE---LREAVEWPLKHPEIFEKMGIRPPKG--VLLFGPPGTGKTLLAKAVA-------TESG--- 512 (733)
T ss_pred cccchhhcccHHHHHHH---HHHHHHhhhhCHHHHHhcCCCCCce--EEEECCCCCCHHHHHHHHH-------HhcC---
Confidence 45458999999999866 4554431 1 1124 6789999558875 55332 2222
Q ss_pred cCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEE
Q psy1686 102 ADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFI 181 (448)
Q Consensus 102 ~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfI 181 (448)
..|+.+...+ +++.-.+|--..+|+....+.. ..|.|+||
T Consensus 513 ---~~fi~v~~~~----------------------------l~~~~vGese~~i~~~f~~A~~---------~~p~iifi 552 (733)
T TIGR01243 513 ---ANFIAVRGPE----------------------------ILSKWVGESEKAIREIFRKARQ---------AAPAIIFF 552 (733)
T ss_pred ---CCEEEEehHH----------------------------HhhcccCcHHHHHHHHHHHHHh---------cCCEEEEE
Confidence 2444421111 1112222323556766655421 13799999
Q ss_pred eccCCCCH------------HHHHHHHHhhhhc--CCC-eEEEEecCceeEeeccccCCCCCCChhhhh--hcc-cccCC
Q psy1686 182 DEVHMLDI------------ECFSFLNRALESE--MSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-IIPTQ 243 (448)
Q Consensus 182 DEVH~L~~------------~~f~~Llk~lEe~--~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-ii~~~ 243 (448)
||++.|.. ...+.|+..++.. ... +||.+||+ |..+.++++. ||- ++.+.
T Consensus 553 DEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~------------~~~ld~allRpgRfd~~i~v~ 620 (733)
T TIGR01243 553 DEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNR------------PDILDPALLRPGRFDRLILVP 620 (733)
T ss_pred EChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCC------------hhhCCHhhcCCCccceEEEeC
Confidence 99998831 3456666666632 122 44444444 7789999984 885 88899
Q ss_pred CCCHHHHHHHHHHhc----CCHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhC------------------CCcccH
Q psy1686 244 PYQDEEIQAILKIRL----MQTD-GLRVLTKIALDTSLRYAIQLITTASVVCRRRK------------------ATEICM 300 (448)
Q Consensus 244 pys~~eI~~IL~~Ra----i~de-al~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~------------------~~~It~ 300 (448)
+.+.++-.+|++... ++++ -++.|++.+.+-+..+--++...|...|..+. ...|+.
T Consensus 621 ~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 700 (733)
T TIGR01243 621 PPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEM 700 (733)
T ss_pred CcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccH
Confidence 999999999987433 4333 47889998833377777777777766553211 124777
Q ss_pred HHHHHHHHH
Q psy1686 301 EDIRKVYAL 309 (448)
Q Consensus 301 e~V~~~~~l 309 (448)
+|..+++..
T Consensus 701 ~~f~~al~~ 709 (733)
T TIGR01243 701 RHFLEALKK 709 (733)
T ss_pred HHHHHHHHH
Confidence 777776653
No 142
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.49 E-value=1.5e-06 Score=99.08 Aligned_cols=96 Identities=23% Similarity=0.411 Sum_probs=68.5
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC-----------C-CeEEEEecCceeEe----eccc---------cCCCCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM-----------S-PVVITATNRGVTKI----RGTA---------YSSPHGIP 230 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~-----------~-pi~IlaT~~~i~lI----~~Tt---------enp~~~Ip 230 (448)
++||||||++.++.+.++.|++.+++.. . .+||++||-+...+ +..+ ..--....
T Consensus 671 ~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 750 (857)
T PRK10865 671 YSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFR 750 (857)
T ss_pred CCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHccccc
Confidence 3799999999999999999999998752 2 25777777643221 1100 00012357
Q ss_pred hhhhhhc-ccccCCCCCHHHHHHHHHHhc---------------CCHHHHHHHHHHc
Q psy1686 231 IDLLDRM-VIIPTQPYQDEEIQAILKIRL---------------MQTDGLRVLTKIA 271 (448)
Q Consensus 231 ~~lLSR~-~ii~~~pys~~eI~~IL~~Ra---------------i~deal~~La~~a 271 (448)
++|++|+ .++.|.|++.+++.+|++... ++++++++|++.+
T Consensus 751 PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~g 807 (857)
T PRK10865 751 PEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENG 807 (857)
T ss_pred HHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcC
Confidence 8999999 799999999999988876311 6777777776665
No 143
>KOG1514|consensus
Probab=98.33 E-value=4.7e-06 Score=91.46 Aligned_cols=148 Identities=18% Similarity=0.240 Sum_probs=110.0
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhcCCC---eEEEEecCceeEeeccccCCCCCCChhhhhhcc--cccCCCCCHHH
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESEMSP---VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV--IIPTQPYQDEE 249 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p---i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~--ii~~~pys~~e 249 (448)
.+.|+.|||.+-|-...|+.|+...+=|-+| .+|++--. |-.-|---++.-.=||.. -+.|+||+.++
T Consensus 508 ~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN-------TmdlPEr~l~nrvsSRlg~tRi~F~pYth~q 580 (767)
T KOG1514|consen 508 STTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN-------TMDLPERLLMNRVSSRLGLTRICFQPYTHEQ 580 (767)
T ss_pred CCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc-------cccCHHHHhccchhhhccceeeecCCCCHHH
Confidence 4699999999999888888888888766655 33332222 211111112222335653 78999999999
Q ss_pred HHHHHHHhc-----CCHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhhhhCC-------CcccHHHHHHHHHHhcch--
Q psy1686 250 IQAILKIRL-----MQTDGLRVLTKI--ALDTSLRYAIQLITTASVVCRRRKA-------TEICMEDIRKVYALFLDE-- 313 (448)
Q Consensus 250 I~~IL~~Ra-----i~deal~~La~~--a~~Gd~R~AL~lLe~a~~~a~~~~~-------~~It~e~V~~~~~lf~D~-- 313 (448)
|.+|+..|. ++.+|.+++|+. |..||+|.|+.+.++|..+|..+.. ..|+.-+|.++..-+++.
T Consensus 581 Lq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~~ 660 (767)
T KOG1514|consen 581 LQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLASPY 660 (767)
T ss_pred HHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhhhH
Confidence 999998776 889999999987 5789999999999999999875443 468999999998866654
Q ss_pred hHHHHHHHHHHhhhhh
Q psy1686 314 GRSTQYLREHQNEYMF 329 (448)
Q Consensus 314 ~~s~~~L~~~~~~~l~ 329 (448)
-..++.|.-+++.|++
T Consensus 661 ~~~i~glS~~~k~fl~ 676 (767)
T KOG1514|consen 661 IKALKGLSFLQKIFLT 676 (767)
T ss_pred HHHhcchHHHHHHHHH
Confidence 5677788888888776
No 144
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=8.8e-06 Score=83.74 Aligned_cols=122 Identities=31% Similarity=0.376 Sum_probs=85.6
Q ss_pred CeEEEEeccCCC-----------CHHHHHHHHHhhhhcC--CC----eEEEEecCceeEeeccccCCCCCCChhhh----
Q psy1686 176 PGVLFIDEVHML-----------DIECFSFLNRALESEM--SP----VVITATNRGVTKIRGTAYSSPHGIPIDLL---- 234 (448)
Q Consensus 176 ~~VLfIDEVH~L-----------~~~~f~~Llk~lEe~~--~p----i~IlaT~~~i~lI~~Ttenp~~~Ip~~lL---- 234 (448)
|.|+|||||+.. +.+.|--++..+-+-. .| .+|+|||+ +--+-|+||
T Consensus 245 PsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR------------~D~LDPALLRPGR 312 (406)
T COG1222 245 PSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNR------------PDILDPALLRPGR 312 (406)
T ss_pred CeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCC------------ccccChhhcCCCc
Confidence 899999999987 3466666666654432 22 89999998 444545554
Q ss_pred -hhcccccCCCCCHHHHHHHHHHhc----CCHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 235 -DRMVIIPTQPYQDEEIQAILKIRL----MQTDG-LRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 235 -SR~~ii~~~pys~~eI~~IL~~Ra----i~dea-l~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+| .|.|..-+.+-=.+||++.+ +++++ ++.|++...+.|.-+--++-.-|..+|.++.+..||.+|..+++.
T Consensus 313 ~DR--kIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~ 390 (406)
T COG1222 313 FDR--KIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVE 390 (406)
T ss_pred ccc--eeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHH
Confidence 44 46666556555567777655 55554 788888873446666666677888889877888999999999987
Q ss_pred Hhc
Q psy1686 309 LFL 311 (448)
Q Consensus 309 lf~ 311 (448)
...
T Consensus 391 KV~ 393 (406)
T COG1222 391 KVV 393 (406)
T ss_pred HHH
Confidence 543
No 145
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.29 E-value=1e-05 Score=89.66 Aligned_cols=210 Identities=17% Similarity=0.247 Sum_probs=127.5
Q ss_pred cccccccccchhhhhhhHHHHHHHhcC--------CCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCc
Q psy1686 37 RKVSQGMVGQLQARRAAGVVLGMIKEE--------VVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKD 107 (448)
Q Consensus 37 ~~~~~~~VGQ~~~r~a~~~l~~mI~~~--------ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~f 107 (448)
...++++.|...+.....-+.+..+.. +++ +-+.++||+.+|||+ ++... .+.+ .+|
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~-~gill~G~~G~GKt~~~~~~a-------~~~~------~~f 213 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIP-KGVLMVGPPGTGKTLLAKAIA-------GEAK------VPF 213 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCC-CcEEEECCCCCCHHHHHHHHH-------HHcC------CCE
Confidence 444889999888876655555544321 121 127789998558875 55321 1111 244
Q ss_pred cccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCC
Q psy1686 108 LRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHML 187 (448)
Q Consensus 108 v~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L 187 (448)
+.+...+ +...+.|. -...+|+.+..+.. . .|.|+||||+|.+
T Consensus 214 ~~is~~~-------------------------~~~~~~g~---~~~~~~~~f~~a~~-----~----~P~IifIDEiD~l 256 (644)
T PRK10733 214 FTISGSD-------------------------FVEMFVGV---GASRVRDMFEQAKK-----A----APCIIFIDEIDAV 256 (644)
T ss_pred EEEehHH-------------------------hHHhhhcc---cHHHHHHHHHHHHh-----c----CCcEEEehhHhhh
Confidence 4421111 11111121 11567766655421 1 3789999999998
Q ss_pred CH--------------HHHHHHHHhhhhcCC--C-eEEEEecCceeEeeccccCCCCCCChhhhh--hc-ccccCCCCCH
Q psy1686 188 DI--------------ECFSFLNRALESEMS--P-VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RM-VIIPTQPYQD 247 (448)
Q Consensus 188 ~~--------------~~f~~Llk~lEe~~~--p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~-~ii~~~pys~ 247 (448)
.. ..++.|+..++.... . ++|.+||. +..+.++++. |+ ..+.+...+.
T Consensus 257 ~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~------------p~~lD~Al~RpgRfdr~i~v~~Pd~ 324 (644)
T PRK10733 257 GRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNR------------PDVLDPALLRPGRFDRQVVVGLPDV 324 (644)
T ss_pred hhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCC------------hhhcCHHHhCCcccceEEEcCCCCH
Confidence 32 134455555554322 1 44444444 7778888884 66 3777888888
Q ss_pred HHHHHHHHHhc----CCHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 248 EEIQAILKIRL----MQTD-GLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 248 ~eI~~IL~~Ra----i~de-al~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
++-.+|++... +.++ -+..|++...+-+.++--+++..|...|...+...|+.++++++...
T Consensus 325 ~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~ 391 (644)
T PRK10733 325 RGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDK 391 (644)
T ss_pred HHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence 88888888433 3332 25668888733388888889988888776667778999999998763
No 146
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=98.23 E-value=1.3e-05 Score=79.34 Aligned_cols=122 Identities=11% Similarity=0.188 Sum_probs=92.9
Q ss_pred CeEEEEeccCCCC-HHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHH
Q psy1686 176 PGVLFIDEVHMLD-IECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAI 253 (448)
Q Consensus 176 ~~VLfIDEVH~L~-~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~I 253 (448)
+.|++|+++|.+. +...+.|.+.+++++.. ++|+.++. . . ...+..+.-..+ ++|.++.+.+++..++...
T Consensus 47 ~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~-~---~--~~~~~~k~~~~~-~~~~~i~~~~~~~~~~~~~ 119 (302)
T TIGR01128 47 RRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPK-L---D--KRKKLTKWLKAL-KNAQIVECKTPKEQELPRW 119 (302)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCC-C---C--HhHHHHHHHHHh-cCeeEEEecCCCHHHHHHH
Confidence 4899999999986 46789999999998776 44444442 0 0 000011111222 5999999999999999988
Q ss_pred HHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 254 LKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 254 L~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++..+ ++++++++|+... +||++.+.|.|+....++. .+.||.++|+.+..
T Consensus 120 i~~~~~~~g~~i~~~a~~~l~~~~-~~d~~~l~~el~KL~~~~~---~~~It~e~I~~~~~ 176 (302)
T TIGR01128 120 IQARLKKLGLRIDPDAVQLLAELV-EGNLLAIAQELEKLALYAP---DGKITLEDVEEAVS 176 (302)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHh-CcHHHHHHHHHHHHHhhCC---CCCCCHHHHHHHHh
Confidence 87654 9999999999999 9999999999999877752 23699999998876
No 147
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.22 E-value=1.3e-05 Score=86.76 Aligned_cols=123 Identities=19% Similarity=0.227 Sum_probs=87.4
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCC-----eEEEEecCceeEeeccccCC-----CCCCChhhhhhcc--cccCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSP-----VVITATNRGVTKIRGTAYSS-----PHGIPIDLLDRMV--IIPTQ 243 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-----i~IlaT~~~i~lI~~Ttenp-----~~~Ip~~lLSR~~--ii~~~ 243 (448)
.+.|||||||.|+.+.|..|++.+++.... .-+ .-.+.+|.+|+.++ ......+|..|+- .|.+.
T Consensus 291 ~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~---~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lP 367 (534)
T TIGR01817 291 GGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTL---KVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLP 367 (534)
T ss_pred CCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceE---eecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCC
Confidence 489999999999999999999999874310 000 01123444444332 1234578888874 56788
Q ss_pred CCC--HHHHHHHHHH---h-c--------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHH
Q psy1686 244 PYQ--DEEIQAILKI---R-L--------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIR 304 (448)
Q Consensus 244 pys--~~eI~~IL~~---R-a--------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~ 304 (448)
||. .+||..++.. + + +++++++.|.++.--|+.|..-|.+++++..+ .+..|+.+++.
T Consensus 368 pLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 368 PLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred CcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 998 4677555442 1 1 89999999999987899999999999997765 24578888864
No 148
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.21 E-value=1.4e-05 Score=83.82 Aligned_cols=135 Identities=24% Similarity=0.240 Sum_probs=86.4
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhcCCCeE----EEEecCceeEeeccccCCCCCCChhhhhhcc-cccCCCCC-HH
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESEMSPVV----ITATNRGVTKIRGTAYSSPHGIPIDLLDRMV-IIPTQPYQ-DE 248 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~----IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~-ii~~~pys-~~ 248 (448)
.+|||+||||..|+...++.|+.++++--..+= .+.-.-.+++|+.++.- --.|-+.||+|+. .+...+-+ .+
T Consensus 144 nRGIlYvDEvnlL~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPE-eGeLrpqLlDRfg~~v~~~~~~~~~ 222 (423)
T COG1239 144 NRGILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPE-EGELRPQLLDRFGLEVDTHYPLDLE 222 (423)
T ss_pred cCCEEEEeccccccHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCcc-ccccchhhHhhhcceeeccCCCCHH
Confidence 359999999999999999999999998311000 00001112344444311 2347789999974 55554433 33
Q ss_pred HHHHHHHHhc-----------------------------------CCHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHh
Q psy1686 249 EIQAILKIRL-----------------------------------MQTDGLRVLTKIALDT---SLRYAIQLITTASVVC 290 (448)
Q Consensus 249 eI~~IL~~Ra-----------------------------------i~deal~~La~~a~~G---d~R~AL~lLe~a~~~a 290 (448)
+-.+|++++. ++++++.+++..+..+ ..|-.+-+.+.+..+|
T Consensus 223 ~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~radi~~~r~a~a~a 302 (423)
T COG1239 223 ERVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADIVVVRAAKALA 302 (423)
T ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3344444322 7788877777763211 3777777778777666
Q ss_pred hhhCCCcccHHHHHHHHHHh
Q psy1686 291 RRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 291 ~~~~~~~It~e~V~~~~~lf 310 (448)
.-.|+..++.+|++++..+-
T Consensus 303 a~~Gr~~v~~~Di~~a~~l~ 322 (423)
T COG1239 303 ALRGRTEVEEEDIREAAELA 322 (423)
T ss_pred HhcCceeeehhhHHHHHhhh
Confidence 55788899999999998753
No 149
>KOG0734|consensus
Probab=98.20 E-value=1.9e-05 Score=84.78 Aligned_cols=223 Identities=20% Similarity=0.306 Sum_probs=129.9
Q ss_pred cCCCCCCCCCcccc----ccccccchhhhhhhHHHHHHHhc--------CCCC-CCCcccccCCCCCcch-hhhhhhccC
Q psy1686 26 RGLGLDDSLEPRKV----SQGMVGQLQARRAAGVVLGMIKE--------EVVM-VWPCVMCGRGKNPQKV-KKISTATGR 91 (448)
Q Consensus 26 ~glgL~~~~~p~~~----~~~~VGQ~~~r~a~~~l~~mI~~--------~ki~-gpf~~~~G~ei~GKtt-~~I~~~~gk 91 (448)
.|+||+....|... |+++-|-+.++.+..=+++-++. ||++ | +.+.|||.+|||- ||-.+.-.
T Consensus 285 ~~~gl~~ev~p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKG--VLLvGPPGTGKTlLARAvAGEA- 361 (752)
T KOG0734|consen 285 STTGLDSEVDPEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKG--VLLVGPPGTGKTLLARAVAGEA- 361 (752)
T ss_pred cccccccccChhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCc--eEEeCCCCCchhHHHHHhhccc-
Confidence 46777766666544 89999999999998878877764 5554 6 7788999558875 55332211
Q ss_pred ccccccCCCccCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCc
Q psy1686 92 EEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGK 171 (448)
Q Consensus 92 ~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~ 171 (448)
+ .+|..|-..| |-.++-|. +. ..||+-...+.. +
T Consensus 362 ------~------VPFF~~sGSE-------------------------FdEm~VGv-GA--rRVRdLF~aAk~------~ 395 (752)
T KOG0734|consen 362 ------G------VPFFYASGSE-------------------------FDEMFVGV-GA--RRVRDLFAAAKA------R 395 (752)
T ss_pred ------C------CCeEeccccc-------------------------hhhhhhcc-cH--HHHHHHHHHHHh------c
Confidence 1 2344332222 33333333 11 789987776643 2
Q ss_pred ccccCeEEEEeccCCCC-----HHHH---HHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhh-----hhcc
Q psy1686 172 AEIVPGVLFIDEVHMLD-----IECF---SFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLL-----DRMV 238 (448)
Q Consensus 172 ~~i~~~VLfIDEVH~L~-----~~~f---~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lL-----SR~~ 238 (448)
-|+|+||||++... .++. .-||..+-|-... .-|.||++|+||+. |-.+-++|+ +|-.
T Consensus 396 ---APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF----~qNeGiIvigATNf--pe~LD~AL~RPGRFD~~v 466 (752)
T KOG0734|consen 396 ---APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGF----KQNEGIIVIGATNF--PEALDKALTRPGRFDRHV 466 (752)
T ss_pred ---CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCc----CcCCceEEEeccCC--hhhhhHHhcCCCccceeE
Confidence 38999999999873 2221 1233333222111 23566777777752 112222322 2222
Q ss_pred cccCCCCCHHHHHHHHHHhc----CCHHH-HHHHHHHcCCC-CHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 239 IIPTQPYQDEEIQAILKIRL----MQTDG-LRVLTKIALDT-SLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 239 ii~~~pys~~eI~~IL~~Ra----i~dea-l~~La~~a~~G-d~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
.+... +..==.+||+.-. .++++ +..||+-. .| +.-+--|++-+|+..|-.++...||..+++.+-..
T Consensus 467 ~Vp~P--Dv~GR~eIL~~yl~ki~~~~~VD~~iiARGT-~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akDr 540 (752)
T KOG0734|consen 467 TVPLP--DVRGRTEILKLYLSKIPLDEDVDPKIIARGT-PGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAKDR 540 (752)
T ss_pred ecCCC--CcccHHHHHHHHHhcCCcccCCCHhHhccCC-CCCchHHHHHHHHHHHHHHHhcCcccccHHHHhhhhhh
Confidence 22222 2111245555322 33333 45666665 44 77777899999998887788889999999988764
No 150
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.16 E-value=2.5e-05 Score=84.32 Aligned_cols=134 Identities=16% Similarity=0.228 Sum_probs=89.6
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCC-----CeEEEEecCceeEeecccc-----CC------CCCCChhhhhhc-c
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMS-----PVVITATNRGVTKIRGTAY-----SS------PHGIPIDLLDRM-V 238 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~-----pi~IlaT~~~i~lI~~Tte-----np------~~~Ip~~lLSR~-~ 238 (448)
.+++||||++.++...+..|+.++|+..- ... ..-+....+|.+++. ++ -+.+|+++|||+ +
T Consensus 301 ~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~-~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdL 379 (509)
T smart00350 301 NGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGIT-TTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDL 379 (509)
T ss_pred CCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEE-EEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceee
Confidence 48999999999999999999999987431 000 000111123333321 11 136999999999 6
Q ss_pred cccCCCCC--------------------------------HHHHHHHHHH-h--c---CCHHHHHHHHHHc-------C-
Q psy1686 239 IIPTQPYQ--------------------------------DEEIQAILKI-R--L---MQTDGLRVLTKIA-------L- 272 (448)
Q Consensus 239 ii~~~pys--------------------------------~~eI~~IL~~-R--a---i~deal~~La~~a-------~- 272 (448)
++.+..+. .+.+++.+.+ | . +++++.++|.++. .
T Consensus 380 i~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~ 459 (509)
T smart00350 380 LFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQ 459 (509)
T ss_pred EEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccc
Confidence 66553332 2223222221 1 1 7999999998761 0
Q ss_pred -------CCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 273 -------DTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 273 -------~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
.-++|..+.++..|...|.-+++..|+.+||+.+..++
T Consensus 460 ~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~ 504 (509)
T smart00350 460 SEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLL 504 (509)
T ss_pred cccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 11789999999999888877888899999999999876
No 151
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.11 E-value=0.00012 Score=79.20 Aligned_cols=91 Identities=19% Similarity=0.189 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCH------------HHHHHHHHhhhhcCCCeEEEEecCceeEeec
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDI------------ECFSFLNRALESEMSPVVITATNRGVTKIRG 220 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~------------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~ 220 (448)
..+|...+.+... ...+ .|.|+||||+|.+.. ...+.|+..++.... .+++++|++
T Consensus 272 ~~ir~iF~~Ar~~-a~~g----~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~-------~~~ViVI~A 339 (512)
T TIGR03689 272 RQIRLIFQRAREK-ASDG----RPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES-------LDNVIVIGA 339 (512)
T ss_pred HHHHHHHHHHHHH-hhcC----CCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc-------CCceEEEec
Confidence 5666655554322 2223 368999999999832 123455555553221 123333433
Q ss_pred cccCCCCCCChhhhh--hcc-cccCCCCCHHHHHHHHHHh
Q psy1686 221 TAYSSPHGIPIDLLD--RMV-IIPTQPYQDEEIQAILKIR 257 (448)
Q Consensus 221 Ttenp~~~Ip~~lLS--R~~-ii~~~pys~~eI~~IL~~R 257 (448)
| |.+..|.++++. |+- .|+|.+++.++.++|++..
T Consensus 340 T--N~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~ 377 (512)
T TIGR03689 340 S--NREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKY 377 (512)
T ss_pred c--CChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHH
Confidence 3 337889999997 764 6999999999999999854
No 152
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.11 E-value=2.6e-05 Score=93.51 Aligned_cols=141 Identities=16% Similarity=0.235 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHH-----HHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCC
Q psy1686 154 EVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIE-----CFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHG 228 (448)
Q Consensus 154 eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~-----~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~ 228 (448)
.||...+.|.. ..|.|+||||||-|+.. ..+.|+..+..... .++++++++|+||. -|-.
T Consensus 1720 rIr~lFelARk---------~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~----~~s~~~VIVIAATN--RPD~ 1784 (2281)
T CHL00206 1720 YITLQFELAKA---------MSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCE----RCSTRNILVIASTH--IPQK 1784 (2281)
T ss_pred HHHHHHHHHHH---------CCCeEEEEEchhhcCCCccceehHHHHHHHhccccc----cCCCCCEEEEEeCC--Cccc
Confidence 37777766532 14899999999999753 24556665553210 01223344444442 1778
Q ss_pred CChhhhh--hcc-cccCCCCCH---HHHHHHHH-Hhc--CCHH--HHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCc
Q psy1686 229 IPIDLLD--RMV-IIPTQPYQD---EEIQAILK-IRL--MQTD--GLRVLTKIALDTSLRYAIQLITTASVVCRRRKATE 297 (448)
Q Consensus 229 Ip~~lLS--R~~-ii~~~pys~---~eI~~IL~-~Ra--i~de--al~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~ 297 (448)
+.+||+. |+- .|.+...+. +++..+|. .+. ++++ -++.+|+.+.+-+.++--++...|+..|..++...
T Consensus 1785 LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ks~ 1864 (2281)
T CHL00206 1785 VDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSI 1864 (2281)
T ss_pred CCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 9999986 552 445444443 33444442 122 4433 26788988844499999999999998887778889
Q ss_pred ccHHHHHHHHHH
Q psy1686 298 ICMEDIRKVYAL 309 (448)
Q Consensus 298 It~e~V~~~~~l 309 (448)
|+.++++.|+..
T Consensus 1865 Id~~~I~~Al~R 1876 (2281)
T CHL00206 1865 IDTNTIRSALHR 1876 (2281)
T ss_pred cCHHHHHHHHHH
Confidence 999999999863
No 153
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.09 E-value=2.3e-05 Score=86.03 Aligned_cols=129 Identities=20% Similarity=0.208 Sum_probs=95.8
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhcC-------------CCeEEEEecCceeEeeccccCCCCCCChhhhhhcc-cc
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESEM-------------SPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV-II 240 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~~-------------~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~-ii 240 (448)
..+||||||+.+|+...++.|+.++|+-. .+.++++|..+. ..-+.+|.++|+|+. .+
T Consensus 93 h~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~--------~~~~~L~~~lLDRf~l~v 164 (584)
T PRK13406 93 DGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGA--------EEDERAPAALADRLAFHL 164 (584)
T ss_pred cCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCCh--------hcccCCCHHhHhheEEEE
Confidence 35899999999999999999999999742 223333432110 012569999999996 67
Q ss_pred cCCCCCHHHHH-------HHHHHhc------CCHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHhhhhCCCcccHHHHH
Q psy1686 241 PTQPYQDEEIQ-------AILKIRL------MQTDGLRVLTKIALDT---SLRYAIQLITTASVVCRRRKATEICMEDIR 304 (448)
Q Consensus 241 ~~~pys~~eI~-------~IL~~Ra------i~deal~~La~~a~~G---d~R~AL~lLe~a~~~a~~~~~~~It~e~V~ 304 (448)
.+.+.+..+.. +|++.|. ++++.++++++++... +.|-.+.++..|..+|.-+|...|+.+||+
T Consensus 165 ~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~ 244 (584)
T PRK13406 165 DLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLA 244 (584)
T ss_pred EcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 77776665542 3443332 9999999988875322 779999999999888876788999999999
Q ss_pred HHHHHhc
Q psy1686 305 KVYALFL 311 (448)
Q Consensus 305 ~~~~lf~ 311 (448)
++..+.+
T Consensus 245 ~Aa~lvL 251 (584)
T PRK13406 245 LAARLVL 251 (584)
T ss_pred HHHHHHH
Confidence 9998643
No 154
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.08 E-value=4.5e-05 Score=75.34 Aligned_cols=128 Identities=17% Similarity=0.163 Sum_probs=86.8
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhcCCCe--------EEEEecCceeEeeccccC---CCCCCChhhhhhcccccCCCC
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESEMSPV--------VITATNRGVTKIRGTAYS---SPHGIPIDLLDRMVIIPTQPY 245 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi--------~IlaT~~~i~lI~~Tten---p~~~Ip~~lLSR~~ii~~~py 245 (448)
++++|||+++++.+.++.|+.++|+....+ ++ .-.....+|.+++.. --+..|.+|++||..+.+...
T Consensus 107 ~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i-~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P 185 (262)
T TIGR02640 107 FTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYV-DVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYP 185 (262)
T ss_pred CEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceE-ecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCC
Confidence 789999999999999999999998742100 00 000111222222111 113458999999999999888
Q ss_pred CHHHHHHHHHHhc-CCHHHHHHHHHHc-----C----CCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 246 QDEEIQAILKIRL-MQTDGLRVLTKIA-----L----DTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 246 s~~eI~~IL~~Ra-i~deal~~La~~a-----~----~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+.++..+|++.+. ++++..+.+.++. . .-+.|-++.+...+... .....++.++++++..
T Consensus 186 ~~~~e~~Il~~~~~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~~~~---~~~~~~~~~~~~~~~~ 255 (262)
T TIGR02640 186 DIDTETAILRAKTDVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEVATQQ---DIPVDVDDEDFVDLCI 255 (262)
T ss_pred CHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHHHHc---CCCCCCCcHHHHHHHH
Confidence 9999999999766 8888877777773 1 11577777777766443 2355688888887764
No 155
>KOG2227|consensus
Probab=98.03 E-value=8.1e-06 Score=86.32 Aligned_cols=145 Identities=21% Similarity=0.248 Sum_probs=98.3
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCC----eEEEEecCceeEeeccccCCCCCCChhhhhhc----ccccCCCCCH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSP----VVITATNRGVTKIRGTAYSSPHGIPIDLLDRM----VIIPTQPYQD 247 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p----i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~----~ii~~~pys~ 247 (448)
+-|+++||.++|....+..|+-..|=+-.| ++|.--|. +.-|+ . | + +.|-.|+ .++.|+||+.
T Consensus 257 ~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANs----lDlTd-R--~-L-prL~~~~~~~P~~l~F~PYTk 327 (529)
T KOG2227|consen 257 MLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANS----LDLTD-R--F-L-PRLNLDLTIKPKLLVFPPYTK 327 (529)
T ss_pred eEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhh----hhHHH-H--H-h-hhhhhccCCCCceeeecCCCH
Confidence 478899999999988888888888866666 22211111 11111 1 0 1 2233322 3789999999
Q ss_pred HHHHHHHHHhc-------CCHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhhhhCC----------------CcccHHH
Q psy1686 248 EEIQAILKIRL-------MQTDGLRVLTKI--ALDTSLRYAIQLITTASVVCRRRKA----------------TEICMED 302 (448)
Q Consensus 248 ~eI~~IL~~Ra-------i~deal~~La~~--a~~Gd~R~AL~lLe~a~~~a~~~~~----------------~~It~e~ 302 (448)
++|.+||+.|. +-+.|++++|+- |..||+|.||.....|..+++.+++ +.|..++
T Consensus 328 ~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~ 407 (529)
T KOG2227|consen 328 DQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEH 407 (529)
T ss_pred HHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHH
Confidence 99999999877 555689998886 5689999999999999988865322 3466788
Q ss_pred HHHHHHHhcc--hhHHHHHHHHHHhhhhh
Q psy1686 303 IRKVYALFLD--EGRSTQYLREHQNEYMF 329 (448)
Q Consensus 303 V~~~~~lf~D--~~~s~~~L~~~~~~~l~ 329 (448)
|-.+++-++. ..++...|..+++..+-
T Consensus 408 va~viSk~~~s~~~~s~~slplqqkiilc 436 (529)
T KOG2227|consen 408 VAAVISKVDGSPSARSRESLPLQQKIILC 436 (529)
T ss_pred HHHHhhhhccChhhhhhhhcCcccchhHH
Confidence 8888876542 24555555555555443
No 156
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=2.8e-05 Score=87.20 Aligned_cols=211 Identities=20% Similarity=0.311 Sum_probs=126.6
Q ss_pred ccccCccCCCCCCCCC---------ccccccccccchhhhhhhHHHHHHHhcCCCC--C---C--CcccccCCCCCcch-
Q psy1686 20 GAHSHIRGLGLDDSLE---------PRKVSQGMVGQLQARRAAGVVLGMIKEEVVM--V---W--PCVMCGRGKNPQKV- 82 (448)
Q Consensus 20 ~~hsHi~glgL~~~~~---------p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~--g---p--f~~~~G~ei~GKtt- 82 (448)
.+.|+..|.|+..-+. +...-+-+|||++|..+ +.++|+..|.. . | -..|.||=..|||-
T Consensus 461 ~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~a---vs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTEL 537 (786)
T COG0542 461 EVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEA---VSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTEL 537 (786)
T ss_pred HHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHH---HHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHH
Confidence 3567788999863221 22235679999999876 67777766542 0 2 12345653138863
Q ss_pred hhhhhhccCccccccCCCccCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHH
Q psy1686 83 KKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAK 162 (448)
Q Consensus 83 ~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~ 162 (448)
|+..+..- .|....++.+-=.| ++-=|-+.=+--.|.|+=.. +.-|..|..||.
T Consensus 538 AkaLA~~L----------fg~e~aliR~DMSE---------y~EkHsVSrLIGaPPGYVGy--eeGG~LTEaVRr----- 591 (786)
T COG0542 538 AKALAEAL----------FGDEQALIRIDMSE---------YMEKHSVSRLIGAPPGYVGY--EEGGQLTEAVRR----- 591 (786)
T ss_pred HHHHHHHh----------cCCCccceeechHH---------HHHHHHHHHHhCCCCCCcee--ccccchhHhhhc-----
Confidence 44222110 11111122211111 11112222222233343111 223556655552
Q ss_pred HHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCC------------CeEEEEecCceeEeecccc-------
Q psy1686 163 VTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMS------------PVVITATNRGVTKIRGTAY------- 223 (448)
Q Consensus 163 v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~------------pi~IlaT~~~i~lI~~Tte------- 223 (448)
+ .+.|+.+|||.--+++.||.|+..+++--+ -++||.||-|.-.+.....
T Consensus 592 --------~---PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~ 660 (786)
T COG0542 592 --------K---PYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADK 660 (786)
T ss_pred --------C---CCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchh
Confidence 2 247999999999999999999999998752 2778888877643332110
Q ss_pred -----------CCCCCCChhhhhhcc-cccCCCCCHHHHHHHHHHhc---------------CCHHHHHHHHHHcC
Q psy1686 224 -----------SSPHGIPIDLLDRMV-IIPTQPYQDEEIQAILKIRL---------------MQTDGLRVLTKIAL 272 (448)
Q Consensus 224 -----------np~~~Ip~~lLSR~~-ii~~~pys~~eI~~IL~~Ra---------------i~deal~~La~~a~ 272 (448)
+.. .+|+||.|.- ||.|.|++.+++.+|++... +++++.++|++.+.
T Consensus 661 ~~~~~~v~~~l~~~--F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gy 734 (786)
T COG0542 661 EALKEAVMEELKKH--FRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGY 734 (786)
T ss_pred hhHHHHHHHHHHhh--CCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhcc
Confidence 112 4799999998 99999999999999887522 88999999988874
No 157
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.02 E-value=4.6e-05 Score=83.81 Aligned_cols=134 Identities=23% Similarity=0.309 Sum_probs=88.4
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeE----EEEecCceeEeeccccCCC---CCCChhhhhhccc-ccCCCC-C
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVV----ITATNRGVTKIRGTAYSSP---HGIPIDLLDRMVI-IPTQPY-Q 246 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~----IlaT~~~i~lI~~Ttenp~---~~Ip~~lLSR~~i-i~~~py-s 246 (448)
.++||||||++|+..+|+.|+.++++..-.+- ...-.....+|. | .||. -.+|++|++|+.+ +.+... +
T Consensus 85 ~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIA-t-~np~e~~g~L~~~LldRf~l~v~~~~~~~ 162 (589)
T TIGR02031 85 RGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIA-T-YDPAEGGGGLPDHLLDRLALHVSLEDVAS 162 (589)
T ss_pred CCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEE-e-cCCccccCCCCHHHHHhccCeeecCCCCC
Confidence 47999999999999999999999986430000 000001123332 2 2222 2589999999964 233222 2
Q ss_pred HHHHHHHH-----------------------HHhc------CCHHHHHHHHHHcC--C-CCHHHHHHHHHHHHHHhhhhC
Q psy1686 247 DEEIQAIL-----------------------KIRL------MQTDGLRVLTKIAL--D-TSLRYAIQLITTASVVCRRRK 294 (448)
Q Consensus 247 ~~eI~~IL-----------------------~~Ra------i~deal~~La~~a~--~-Gd~R~AL~lLe~a~~~a~~~~ 294 (448)
.++=.+|+ ..|. ++++.+++|+.++. + .+.|-.+.++..|...|.-++
T Consensus 163 ~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~g 242 (589)
T TIGR02031 163 QDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHG 242 (589)
T ss_pred HHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhC
Confidence 22212222 1111 89999999988842 2 258999999999988776678
Q ss_pred CCcccHHHHHHHHHHhc
Q psy1686 295 ATEICMEDIRKVYALFL 311 (448)
Q Consensus 295 ~~~It~e~V~~~~~lf~ 311 (448)
+..|+.+||+.+..+.+
T Consensus 243 r~~V~~~Dv~~a~~lvl 259 (589)
T TIGR02031 243 RTEVTEEDLKLAVELVL 259 (589)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 89999999999998654
No 158
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.00 E-value=0.00012 Score=82.27 Aligned_cols=101 Identities=20% Similarity=0.245 Sum_probs=63.6
Q ss_pred CeEEEEeccCCCC-----------HHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhh--hc-cccc
Q psy1686 176 PGVLFIDEVHMLD-----------IECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLD--RM-VIIP 241 (448)
Q Consensus 176 ~~VLfIDEVH~L~-----------~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~-~ii~ 241 (448)
|.|+||||+|.+. ...++.|+..++.... .+.+++|++| |++..++++++. |+ ..+.
T Consensus 272 p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~-------~~~vivI~at--n~~~~ld~al~r~gRfd~~i~ 342 (733)
T TIGR01243 272 PSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKG-------RGRVIVIGAT--NRPDALDPALRRPGRFDREIV 342 (733)
T ss_pred CcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcccc-------CCCEEEEeec--CChhhcCHHHhCchhccEEEE
Confidence 6899999999884 2356677777764321 1223333333 236678888876 55 3678
Q ss_pred CCCCCHHHHHHHHHHhc----C-CHHHHHHHHHHcCCC-CHHHHHHHHHHH
Q psy1686 242 TQPYQDEEIQAILKIRL----M-QTDGLRVLTKIALDT-SLRYAIQLITTA 286 (448)
Q Consensus 242 ~~pys~~eI~~IL~~Ra----i-~deal~~La~~a~~G-d~R~AL~lLe~a 286 (448)
+.+.+.++-.+||+... + ++..++.+++.+ .| ...+--.+...|
T Consensus 343 i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t-~G~~gadl~~l~~~a 392 (733)
T TIGR01243 343 IRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVT-HGFVGADLAALAKEA 392 (733)
T ss_pred eCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhC-CCCCHHHHHHHHHHH
Confidence 88889999899988433 3 344577888887 55 444333333333
No 159
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=8e-05 Score=82.34 Aligned_cols=194 Identities=23% Similarity=0.291 Sum_probs=110.9
Q ss_pred hcCCCCCCCcccccCCCCCcch-hh-hhhhccCccccccCCCccCCCCccccCCCcccceeeeeeccchhhhhhhccccc
Q psy1686 61 KEEVVMVWPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTH 138 (448)
Q Consensus 61 ~~~ki~gpf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~ 138 (448)
..+++.||-+-+.|||..|||+ |+ |.+++| .+||.+-=|=+. |.|-=|.|
T Consensus 344 l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~--------------RkfvR~sLGGvr--------------DEAEIRGH 395 (782)
T COG0466 344 LTKKLKGPILCLVGPPGVGKTSLGKSIAKALG--------------RKFVRISLGGVR--------------DEAEIRGH 395 (782)
T ss_pred HhccCCCcEEEEECCCCCCchhHHHHHHHHhC--------------CCEEEEecCccc--------------cHHHhccc
Confidence 3577888999999999448876 55 666666 366664333222 11111111
Q ss_pred cchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCH----HHHHHHHHhhhhcC-----------
Q psy1686 139 GFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDI----ECFSFLNRALESEM----------- 203 (448)
Q Consensus 139 g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~----~~f~~Llk~lEe~~----------- 203 (448)
= ... .|...-.|=+.+.+ -|. .-.|+.||||+-++. +-.++|+..+.-..
T Consensus 396 R--RTY---IGamPGrIiQ~mkk-------a~~---~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev 460 (782)
T COG0466 396 R--RTY---IGAMPGKIIQGMKK-------AGV---KNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEV 460 (782)
T ss_pred c--ccc---cccCChHHHHHHHH-------hCC---cCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccC
Confidence 0 000 01111223222322 232 458999999999865 33566666654221
Q ss_pred ----CCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc----------------CCHHH
Q psy1686 204 ----SPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----------------MQTDG 263 (448)
Q Consensus 204 ----~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----------------i~dea 263 (448)
+.++.+|| -|+...||.+||+|+-||++..|+.+|=.+|-++.. ++|+|
T Consensus 461 ~yDLS~VmFiaT-----------ANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~a 529 (782)
T COG0466 461 PYDLSKVMFIAT-----------ANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEA 529 (782)
T ss_pred ccchhheEEEee-----------cCccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHH
Confidence 12333333 355667999999999999999999998777766311 99999
Q ss_pred HHHHHHH-cCCC---CHHHHHHHHHHHHHH--hhh-hCCC-cccHHHHHHHHH
Q psy1686 264 LRVLTKI-ALDT---SLRYAIQLITTASVV--CRR-RKAT-EICMEDIRKVYA 308 (448)
Q Consensus 264 l~~La~~-a~~G---d~R~AL~lLe~a~~~--a~~-~~~~-~It~e~V~~~~~ 308 (448)
+..|.+. +-+. ++.+-|.-+-+-+.. ... .... .|+..++++.++
T Consensus 530 i~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG 582 (782)
T COG0466 530 IKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLG 582 (782)
T ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhC
Confidence 9888776 2122 444444433332111 111 1222 588888888775
No 160
>KOG1969|consensus
Probab=97.90 E-value=0.00014 Score=80.52 Aligned_cols=139 Identities=19% Similarity=0.231 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcC-----------------------CCeEEE
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEM-----------------------SPVVIT 209 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~-----------------------~pi~Il 209 (448)
..+++.|..++....--+ |--.|.-|+||||+==.+.+.+.|++.++..- -|++..
T Consensus 366 ~~v~~kI~~avq~~s~l~-adsrP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICI 444 (877)
T KOG1969|consen 366 PMVKEKIENAVQNHSVLD-ADSRPVCLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICI 444 (877)
T ss_pred HHHHHHHHHHHhhccccc-cCCCcceEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEE
Confidence 578888888876643221 11368999999999998899999999888211 133333
Q ss_pred EecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHH
Q psy1686 210 ATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLI 283 (448)
Q Consensus 210 aT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lL 283 (448)
|-+- +-|.. .+|.-=|.++.|.|-+..-+.+.|+.-| ++..+|..|++++ ++|+|.+||.|
T Consensus 445 CNdL---------YaPaL---R~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~-~~DIRsCINtL 511 (877)
T KOG1969|consen 445 CNDL---------YAPAL---RPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCELT-QNDIRSCINTL 511 (877)
T ss_pred ecCc---------cchhh---hhcccceEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHh-cchHHHHHHHH
Confidence 3221 12221 3555567899999999998888888766 9999999999999 99999999999
Q ss_pred HHHHHHhhhhCCCcccHHHHHHH
Q psy1686 284 TTASVVCRRRKATEICMEDIRKV 306 (448)
Q Consensus 284 e~a~~~a~~~~~~~It~e~V~~~ 306 (448)
...+...+.. ...|...++-..
T Consensus 512 QfLa~~~~r~-ds~i~~~~i~a~ 533 (877)
T KOG1969|consen 512 QFLASNVDRR-DSSISVKLICAK 533 (877)
T ss_pred HHHHHhcccc-cccchhhhhhhh
Confidence 9876554321 223555555443
No 161
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.88 E-value=0.00016 Score=74.13 Aligned_cols=124 Identities=19% Similarity=0.200 Sum_probs=85.9
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEE--EEecCceeEeeccccCC-----CCCCChhhhhhc--ccccCCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVI--TATNRGVTKIRGTAYSS-----PHGIPIDLLDRM--VIIPTQPYQ 246 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~I--laT~~~i~lI~~Ttenp-----~~~Ip~~lLSR~--~ii~~~pys 246 (448)
.+.||||||+.|+.+.|..|++.+|+.....+= -.....+-+|.+|+.++ ......+|+.|+ ..|.+.|+.
T Consensus 94 gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLR 173 (329)
T TIGR02974 94 GGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFDVITLPPLR 173 (329)
T ss_pred CCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhcchhcCCCchh
Confidence 489999999999999999999999875310000 00011234455554332 123457899998 589999999
Q ss_pred --HHHHHHHHHH---h----------c-CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHH
Q psy1686 247 --DEEIQAILKI---R----------L-MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMED 302 (448)
Q Consensus 247 --~~eI~~IL~~---R----------a-i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~ 302 (448)
.+||..++.. + . ++++|++.|..+.--|+.|..-|.+++++..+. +..++.++
T Consensus 174 eR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~~---~~~~~~~~ 242 (329)
T TIGR02974 174 ERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRHG---LEEAPIDE 242 (329)
T ss_pred hhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhCC---CCccchhh
Confidence 4677555432 0 1 799999999999888999999999999977652 22455544
No 162
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.85 E-value=3.7e-05 Score=84.88 Aligned_cols=127 Identities=19% Similarity=0.214 Sum_probs=85.1
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEe----cCceeEeeccccCC-----CCCCChhhhhhc--ccccCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITAT----NRGVTKIRGTAYSS-----PHGIPIDLLDRM--VIIPTQP 244 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT----~~~i~lI~~Ttenp-----~~~Ip~~lLSR~--~ii~~~p 244 (448)
.+.||||||+.|..+.|..|++.+|+....-+ .. .-.+-+|.+|+.++ ......+|..|. ..|.+.|
T Consensus 417 ~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~--~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPp 494 (638)
T PRK11388 417 GGTLFLEKVEYLSPELQSALLQVLKTGVITRL--DSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPP 494 (638)
T ss_pred CCEEEEcChhhCCHHHHHHHHHHHhcCcEEeC--CCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCC
Confidence 48999999999999999999999987531000 00 00122333333331 122345666664 3677888
Q ss_pred CCHH--HHHHHHHH-------hc-----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHH
Q psy1686 245 YQDE--EIQAILKI-------RL-----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 245 ys~~--eI~~IL~~-------Ra-----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~ 307 (448)
|-+. ||..+++. +. +++++++.|.++.=-|+.|..-|+++.+...+ .+..|+.+++...+
T Consensus 495 LreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 495 LRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 8764 66544442 10 89999999999988899999999999987654 23468888775433
No 163
>KOG0730|consensus
Probab=97.84 E-value=0.00012 Score=80.09 Aligned_cols=207 Identities=22% Similarity=0.234 Sum_probs=134.1
Q ss_pred ccccccccccchhhhhhhHHHHHHHhcC-------------CCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCc
Q psy1686 36 PRKVSQGMVGQLQARRAAGVVLGMIKEE-------------VVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWL 101 (448)
Q Consensus 36 p~~~~~~~VGQ~~~r~a~~~l~~mI~~~-------------ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~ 101 (448)
|+-.++++=||+.+++.. .++|.-. ...| +.++|||.-|||+ ||-. |++-+
T Consensus 429 p~v~W~dIGGlE~lK~el---q~~V~~p~~~pe~F~r~Gi~ppkG--VLlyGPPGC~KT~lAkal-------Ane~~--- 493 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKREL---QQAVEWPLKHPEKFARFGISPPKG--VLLYGPPGCGKTLLAKAL-------ANEAG--- 493 (693)
T ss_pred CCCChhhccCHHHHHHHH---HHHHhhhhhchHHHHHhcCCCCce--EEEECCCCcchHHHHHHH-------hhhhc---
Confidence 666688888899998774 4444321 1124 6789998336765 5522 22222
Q ss_pred cCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEE
Q psy1686 102 ADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFI 181 (448)
Q Consensus 102 ~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfI 181 (448)
..|...+.-|++. .+-|. +| ..||+..+++.. ..|.|+|+
T Consensus 494 ---~nFlsvkgpEL~s-------------------------k~vGe-SE--r~ir~iF~kAR~---------~aP~IiFf 533 (693)
T KOG0730|consen 494 ---MNFLSVKGPELFS-------------------------KYVGE-SE--RAIREVFRKARQ---------VAPCIIFF 533 (693)
T ss_pred ---CCeeeccCHHHHH-------------------------HhcCc-hH--HHHHHHHHHHhh---------cCCeEEeh
Confidence 3666654444432 12333 11 678887776632 24799999
Q ss_pred eccCCCCHH-----------HHHHHHHhhhhcCC--C-eEEEEecCceeEeeccccCCCCCCChhhhh--hcc-cccCCC
Q psy1686 182 DEVHMLDIE-----------CFSFLNRALESEMS--P-VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-IIPTQP 244 (448)
Q Consensus 182 DEVH~L~~~-----------~f~~Llk~lEe~~~--p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-ii~~~p 244 (448)
||++-+..+ ..+-|++-+.-... . .+|-|||+ |-.|-++||+ |+= ++++.+
T Consensus 534 DEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNR------------pd~ID~ALlRPGRlD~iiyVpl 601 (693)
T KOG0730|consen 534 DEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNR------------PDMIDPALLRPGRLDRIIYVPL 601 (693)
T ss_pred hhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCC------------hhhcCHHHcCCcccceeEeecC
Confidence 999999442 25556655554322 2 45566666 7779999998 774 677766
Q ss_pred CCHHHHHHHHHHhc----CCHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHhhhh--CCCcccHHHHHHHHHH
Q psy1686 245 YQDEEIQAILKIRL----MQTD-GLRVLTKIALDTSLRYAIQLITTASVVCRRR--KATEICMEDIRKVYAL 309 (448)
Q Consensus 245 ys~~eI~~IL~~Ra----i~de-al~~La~~a~~Gd~R~AL~lLe~a~~~a~~~--~~~~It~e~V~~~~~l 309 (448)
-+.+-=.+||+..+ ++++ -++.|++....-|.++--++-..|+.+|.++ ....|+.+|.++++..
T Consensus 602 PD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~ 673 (693)
T KOG0730|consen 602 PDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEALKA 673 (693)
T ss_pred ccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHh
Confidence 66666678888655 7777 4788999873338888888888888877543 3457888888888863
No 164
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.83 E-value=5.8e-05 Score=64.67 Aligned_cols=51 Identities=39% Similarity=0.503 Sum_probs=40.8
Q ss_pred CeEEEEeccCCCCHHH-----------HHHHHHhhhhcCCC----eEEEEecCceeEeeccccCCCCCCChhhh-hhcc
Q psy1686 176 PGVLFIDEVHMLDIEC-----------FSFLNRALESEMSP----VVITATNRGVTKIRGTAYSSPHGIPIDLL-DRMV 238 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~-----------f~~Llk~lEe~~~p----i~IlaT~~~i~lI~~Ttenp~~~Ip~~lL-SR~~ 238 (448)
+.|+||||+|.+.... .+.|++.++..... ++|++||. +..++++++ +||.
T Consensus 59 ~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~------------~~~i~~~l~~~rf~ 125 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS------------PDKIDPALLRSRFD 125 (132)
T ss_dssp SEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS------------GGGSCHHHHSTTSE
T ss_pred ceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC------------hhhCCHhHHhCCCc
Confidence 6999999999997766 88999999987763 44444444 677999999 9985
No 165
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.80 E-value=0.00017 Score=77.94 Aligned_cols=131 Identities=15% Similarity=0.192 Sum_probs=92.6
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCC------eEEEEecCceeEeeccccCC---------------------CCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSP------VVITATNRGVTKIRGTAYSS---------------------PHG 228 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p------i~IlaT~~~i~lI~~Ttenp---------------------~~~ 228 (448)
.++|||||+|.|++.+++.|+..+|+.... ...+ ...+.+|.+++.-| ...
T Consensus 296 ~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~--pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~ 373 (499)
T TIGR00368 296 NGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFY--PARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNK 373 (499)
T ss_pred CCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceec--cCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhh
Confidence 489999999999999999999999975310 0000 11234455544321 125
Q ss_pred CChhhhhhcc-cccCCCCCHHHH------------HHHH-------HHh---------------------c-CCHHHHHH
Q psy1686 229 IPIDLLDRMV-IIPTQPYQDEEI------------QAIL-------KIR---------------------L-MQTDGLRV 266 (448)
Q Consensus 229 Ip~~lLSR~~-ii~~~pys~~eI------------~~IL-------~~R---------------------a-i~deal~~ 266 (448)
++.+||||+- .+.+.+++.+++ ++.+ ..| | +++++.++
T Consensus 374 is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~ 453 (499)
T TIGR00368 374 LSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDAND 453 (499)
T ss_pred ccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHH
Confidence 8999999995 778888776654 2211 111 1 46777777
Q ss_pred HHHHcCCC--CHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 267 LTKIALDT--SLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 267 La~~a~~G--d~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+.+....+ ++|--..+|..|..+|.-++...|+.+||.++++
T Consensus 454 l~~a~~~~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 454 LEGALNKLGLSSRATHRILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 77664232 9999999999999888878889999999999885
No 166
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00025 Score=75.87 Aligned_cols=146 Identities=27% Similarity=0.328 Sum_probs=105.2
Q ss_pred hhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCC-----------HHHHHHHHHhhh--hcCCCeE-E
Q psy1686 143 LFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLD-----------IECFSFLNRALE--SEMSPVV-I 208 (448)
Q Consensus 143 ~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~-----------~~~f~~Llk~lE--e~~~pi~-I 208 (448)
+++.-.+|.-+.||+....+.. ..|.|+||||++.+- ...++-|+..+. +...+++ |
T Consensus 312 l~sk~vGesek~ir~~F~~A~~---------~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi 382 (494)
T COG0464 312 LLSKWVGESEKNIRELFEKARK---------LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVI 382 (494)
T ss_pred HhccccchHHHHHHHHHHHHHc---------CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEE
Confidence 3444456677888887776631 247999999999981 246666777764 3334443 4
Q ss_pred EEecCceeEeeccccCCCCCCChhhhh--hcc-cccCCCCCHHHHHHHHHHhc----C---CHHHHHHHHHHcCCCCHHH
Q psy1686 209 TATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-IIPTQPYQDEEIQAILKIRL----M---QTDGLRVLTKIALDTSLRY 278 (448)
Q Consensus 209 laT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-ii~~~pys~~eI~~IL~~Ra----i---~deal~~La~~a~~Gd~R~ 278 (448)
.|||. |..++++++. |+- +|.+.+.+.++-.+|++... . ++--++.|++...+-+..+
T Consensus 383 ~aTN~------------p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgad 450 (494)
T COG0464 383 AATNR------------PDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGAD 450 (494)
T ss_pred ecCCC------------ccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHH
Confidence 55554 7889999988 885 89999999999989988543 1 3455788888773448888
Q ss_pred HHHHHHHHHHHhhhhC-CCcccHHHHHHHHHH
Q psy1686 279 AIQLITTASVVCRRRK-ATEICMEDIRKVYAL 309 (448)
Q Consensus 279 AL~lLe~a~~~a~~~~-~~~It~e~V~~~~~l 309 (448)
.-.++..|...+..+. ...|+.+|...++..
T Consensus 451 i~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~ 482 (494)
T COG0464 451 IAALVREAALEALREARRREVTLDDFLDALKK 482 (494)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHh
Confidence 8888888888776555 567999999988865
No 167
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.66 E-value=0.00059 Score=73.99 Aligned_cols=122 Identities=21% Similarity=0.204 Sum_probs=84.0
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCC-Ce----EEEEecCceeEeeccccCC-----CCCCChhhhhhc--ccccCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMS-PV----VITATNRGVTKIRGTAYSS-----PHGIPIDLLDRM--VIIPTQ 243 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~-pi----~IlaT~~~i~lI~~Ttenp-----~~~Ip~~lLSR~--~ii~~~ 243 (448)
.+.||||||+.|+...|..|++.+++... +. -+ ...+-+|.+|+.++ ......+|..|. ..+.+.
T Consensus 299 ~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~---~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lP 375 (520)
T PRK10820 299 GGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEV---HVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLP 375 (520)
T ss_pred CCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcce---eeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCC
Confidence 48899999999999999999999987421 10 00 01122333333332 112346788884 588899
Q ss_pred CCCH--HHHHHHHH----Hhc---------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHH
Q psy1686 244 PYQD--EEIQAILK----IRL---------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDI 303 (448)
Q Consensus 244 pys~--~eI~~IL~----~Ra---------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V 303 (448)
|+.+ +||..+.. .-+ ++++++.+|..+.--|+.|..-|.+++|...+. +..|+.+++
T Consensus 376 pLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~~~---~~~i~~~~~ 447 (520)
T PRK10820 376 PLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQLE---GYELRPQDI 447 (520)
T ss_pred CcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC---CCcccHHHc
Confidence 9987 35644322 111 899999999999879999999999999977652 346887775
No 168
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=97.64 E-value=0.0005 Score=74.83 Aligned_cols=130 Identities=19% Similarity=0.228 Sum_probs=85.8
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEe---cCceeEeeccccCCCC-----CCChhhhhhc--ccccCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITAT---NRGVTKIRGTAYSSPH-----GIPIDLLDRM--VIIPTQPY 245 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT---~~~i~lI~~Ttenp~~-----~Ip~~lLSR~--~ii~~~py 245 (448)
.|.||||||+.|+.+.|..|++.+|+.....+ ..+ .-.+-+|.+|+.++.. ....+|..|. ..+.+.||
T Consensus 308 gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~-g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPL 386 (526)
T TIGR02329 308 RGTLFLDEIGEMPLPLQTRLLRVLEEREVVRV-GGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPL 386 (526)
T ss_pred CceEEecChHhCCHHHHHHHHHHHhcCcEEec-CCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCc
Confidence 48899999999999999999999997531100 000 0011233333333211 2334666675 57888999
Q ss_pred CH--HHHHHHHHH---hc-------CCHHHHHH-------HHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHH
Q psy1686 246 QD--EEIQAILKI---RL-------MQTDGLRV-------LTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKV 306 (448)
Q Consensus 246 s~--~eI~~IL~~---Ra-------i~deal~~-------La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~ 306 (448)
.+ +||..+... +. ++++++.. |..+.=-|+.|.--|.+++++..+....+..|+.+++...
T Consensus 387 ReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~~ 466 (526)
T TIGR02329 387 RERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRAL 466 (526)
T ss_pred hhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhhh
Confidence 86 466554432 11 88899888 8888888999999999999987642112346888876543
No 169
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.63 E-value=0.00069 Score=68.93 Aligned_cols=67 Identities=30% Similarity=0.382 Sum_probs=46.9
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhc----------C--CCeEEEEecCceeEeeccccCCCCCCChhhhhhc-ccccCC
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESE----------M--SPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM-VIIPTQ 243 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~----------~--~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~-~ii~~~ 243 (448)
+|+|+|||.+-+++.+++|+.+++|. . .|.+++||... -.....+.+|.++++|| +.+.+.
T Consensus 114 ~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np------~e~~g~~~l~eA~ldRf~~~~~v~ 187 (329)
T COG0714 114 VILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNP------GEYEGTYPLPEALLDRFLLRIYVD 187 (329)
T ss_pred eEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCc------cccCCCcCCCHHHHhhEEEEEecC
Confidence 39999999999999999999999992 1 23555555220 01234677899999999 455555
Q ss_pred CCCHHH
Q psy1686 244 PYQDEE 249 (448)
Q Consensus 244 pys~~e 249 (448)
....++
T Consensus 188 yp~~~~ 193 (329)
T COG0714 188 YPDSEE 193 (329)
T ss_pred CCCchH
Confidence 552443
No 170
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00045 Score=77.73 Aligned_cols=138 Identities=20% Similarity=0.229 Sum_probs=100.5
Q ss_pred ccchhhhhhhccccccchhhhcCC--CCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCC-------C--HHHH
Q psy1686 124 TVTLHEIDVINSRTHGFLALFAGD--TGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHML-------D--IECF 192 (448)
Q Consensus 124 ~vtLheiD~~nsr~~g~~a~~~~~--~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L-------~--~~~f 192 (448)
..++..+|+.+ +.+|. +||--+.++..+++.. +.+ +.||||||+|.+ + .++-
T Consensus 226 ~~~i~sLD~g~--------LvAGakyRGeFEeRlk~vl~ev~----~~~-----~vILFIDEiHtiVGAG~~~G~a~DAa 288 (786)
T COG0542 226 DKRIYSLDLGS--------LVAGAKYRGEFEERLKAVLKEVE----KSK-----NVILFIDEIHTIVGAGATEGGAMDAA 288 (786)
T ss_pred CCEEEEecHHH--------HhccccccCcHHHHHHHHHHHHh----cCC-----CeEEEEechhhhcCCCcccccccchh
Confidence 44555666654 33443 4454455555554432 122 489999999999 1 5688
Q ss_pred HHHHHhhhhcCCCeEEEEecCceeEeecccc---CCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc----------C
Q psy1686 193 SFLNRALESEMSPVVITATNRGVTKIRGTAY---SSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----------M 259 (448)
Q Consensus 193 ~~Llk~lEe~~~pi~IlaT~~~i~lI~~Tte---np~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----------i 259 (448)
|.|.+++- .+.+-.|||||. +-++.--++|--|++-+....-+.++-..||+--. |
T Consensus 289 NiLKPaLA-----------RGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i 357 (786)
T COG0542 289 NLLKPALA-----------RGELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRI 357 (786)
T ss_pred hhhHHHHh-----------cCCeEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCcee
Confidence 99999988 588899999983 45777788999999999999999999999987322 9
Q ss_pred CHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHH
Q psy1686 260 QTDGLRVLTKIAL-----DTSLRYAIQLITTASVV 289 (448)
Q Consensus 260 ~deal~~La~~a~-----~Gd~R~AL~lLe~a~~~ 289 (448)
+|+|+..-+.+|. +-=+..|+.+++.|+..
T Consensus 358 ~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~ 392 (786)
T COG0542 358 TDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGAR 392 (786)
T ss_pred cHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHH
Confidence 9999999888862 22345799999998754
No 171
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.55 E-value=0.002 Score=70.02 Aligned_cols=113 Identities=17% Similarity=0.254 Sum_probs=71.5
Q ss_pred cCeEEEEeccCCC---CH-HHHHHHHHhhhhcCC-CeEEEEecCce----eEeeccccCCCCCCChhhhhhc--ccccCC
Q psy1686 175 VPGVLFIDEVHML---DI-ECFSFLNRALESEMS-PVVITATNRGV----TKIRGTAYSSPHGIPIDLLDRM--VIIPTQ 243 (448)
Q Consensus 175 ~~~VLfIDEVH~L---~~-~~f~~Llk~lEe~~~-pi~IlaT~~~i----~lI~~Ttenp~~~Ip~~lLSR~--~ii~~~ 243 (448)
.+.|+.|+|.=.. +. .-.++|.+.+..... |+||..|+-.. --.+.+......-+|++++..+ ..|.|.
T Consensus 132 ~~kvILVEDlPN~~~~~~~~f~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FN 211 (519)
T PF03215_consen 132 NKKVILVEDLPNVFHRDTSRFREALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFN 211 (519)
T ss_pred CceEEEeeccccccchhHHHHHHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEec
Confidence 3589999997543 22 224455555555555 86665553210 0000000111124688888864 589999
Q ss_pred CCCHHHHHHHHHHhc------------CC--HHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy1686 244 PYQDEEIQAILKIRL------------MQ--TDGLRVLTKIALDTSLRYAIQLITTASV 288 (448)
Q Consensus 244 pys~~eI~~IL~~Ra------------i~--deal~~La~~a~~Gd~R~AL~lLe~a~~ 288 (448)
|.+..-|++.|+.-+ .. .+.++.|++.+ +||+|-||+.|+..+.
T Consensus 212 pIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s-~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 212 PIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAESS-NGDIRSAINNLQFWCL 269 (519)
T ss_pred CCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhc-CchHHHHHHHHHHHhc
Confidence 999988877776322 22 34588999998 9999999999998765
No 172
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.52 E-value=0.00017 Score=75.19 Aligned_cols=127 Identities=19% Similarity=0.187 Sum_probs=83.6
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEE--EEecCceeEeeccccCCCC-----CCChhhhhhc--ccccCCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVI--TATNRGVTKIRGTAYSSPH-----GIPIDLLDRM--VIIPTQPYQ 246 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~I--laT~~~i~lI~~Ttenp~~-----~Ip~~lLSR~--~ii~~~pys 246 (448)
.|.|||||||.|+...|..|++.+++.....+= -...-.+-+|.+|+.++.. ....+|..|+ ..+.+.|+-
T Consensus 234 ~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLr 313 (441)
T PRK10365 234 GGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLR 313 (441)
T ss_pred CCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChh
Confidence 489999999999999999999999974311000 0001123355555555332 2344555554 355666766
Q ss_pred HH--HHHHHHHH---h----c------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHH
Q psy1686 247 DE--EIQAILKI---R----L------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRK 305 (448)
Q Consensus 247 ~~--eI~~IL~~---R----a------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~ 305 (448)
.. ||..+... + . ++++++..|..+.--|++|...|.+++++..+ .+..|+.+++..
T Consensus 314 eR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~---~~~~i~~~~l~~ 384 (441)
T PRK10365 314 QRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLL---TGEYISERELPL 384 (441)
T ss_pred hcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC---CCCccchHhCch
Confidence 43 55433321 1 0 89999999999987899999999999987654 234688777753
No 173
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.52 E-value=0.00058 Score=75.51 Aligned_cols=135 Identities=19% Similarity=0.279 Sum_probs=90.1
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeE---------EEEe---cCceeEeeccccCCCCCCChhhhhhcc----c
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVV---------ITAT---NRGVTKIRGTAYSSPHGIPIDLLDRMV----I 239 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~---------IlaT---~~~i~lI~~Ttenp~~~Ip~~lLSR~~----i 239 (448)
.|+|||||++.|+..+|+.|++++++....+. .+.+ .-.+.+|.+++......+.++|++|+- .
T Consensus 218 gGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~v~ 297 (608)
T TIGR00764 218 KGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYGYE 297 (608)
T ss_pred CCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCeEE
Confidence 49999999999999999999999986431110 0000 012234444443323568899999986 1
Q ss_pred ccCC---CCCHHHHHHHHH---Hhc--------CCHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHHhhhhCCC
Q psy1686 240 IPTQ---PYQDEEIQAILK---IRL--------MQTDGLRVLTKIAL---------DTSLRYAIQLITTASVVCRRRKAT 296 (448)
Q Consensus 240 i~~~---pys~~eI~~IL~---~Ra--------i~deal~~La~~a~---------~Gd~R~AL~lLe~a~~~a~~~~~~ 296 (448)
+.|. |-+.+...++.+ ..+ ++++|++.|.+.+. ..+.|.--+++..|...|..+++.
T Consensus 298 v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~ 377 (608)
T TIGR00764 298 VYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKV 377 (608)
T ss_pred EEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcCCc
Confidence 2333 334544433332 222 89999999886532 135799999999997777666778
Q ss_pred cccHHHHHHHHHHh
Q psy1686 297 EICMEDIRKVYALF 310 (448)
Q Consensus 297 ~It~e~V~~~~~lf 310 (448)
.|+.+||+++.+..
T Consensus 378 ~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 378 YVTAEHVLKAKKLA 391 (608)
T ss_pred eecHHHHHHHHHHH
Confidence 89999999998753
No 174
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.48 E-value=0.0002 Score=75.19 Aligned_cols=208 Identities=19% Similarity=0.201 Sum_probs=127.7
Q ss_pred cccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hh-hhhhccCccccccCCCccCCCCccccCCCc
Q psy1686 37 RKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDGWLADVTKDLRCPDGE 114 (448)
Q Consensus 37 ~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge 114 (448)
...++++||.....+. +++-|+.=--.|-.+.+.|...+||+. |+ |-..+. +-. ..+|+...|+.
T Consensus 74 ~~~~~~LIG~~~~~~~---~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~----r~~------~~PFI~~NCa~ 140 (403)
T COG1221 74 SEALDDLIGESPSLQE---LREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSA----RRA------EAPFIAFNCAA 140 (403)
T ss_pred chhhhhhhccCHHHHH---HHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhh----ccc------CCCEEEEEHHH
Confidence 3447999999877544 567666622234567788865347753 33 332221 111 24788877776
Q ss_pred ccceeeeeeccchhhhhhhccccccchhhhcCCCCCCch--HHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHH
Q psy1686 115 LQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITP--EVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECF 192 (448)
Q Consensus 115 ~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~--eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f 192 (448)
.. .+++. +.+|.-.+|.-|- .=|. -+.+ .+ ..|.||+||||+|..+.|
T Consensus 141 ~~------------------en~~~-~eLFG~~kGaftGa~~~k~-------Glfe--~A--~GGtLfLDEI~~LP~~~Q 190 (403)
T COG1221 141 YS------------------ENLQE-AELFGHEKGAFTGAQGGKA-------GLFE--QA--NGGTLFLDEIHRLPPEGQ 190 (403)
T ss_pred hC------------------cCHHH-HHHhccccceeecccCCcC-------chhe--ec--CCCEEehhhhhhCCHhHH
Confidence 43 22221 1111111111110 0000 0110 11 248999999999999999
Q ss_pred HHHHHhhhhcCC-----CeEEEEecCceeEeeccccCCCCCCCh--hhhhhcc--cccCCCCCHH--HHHHHHHH----h
Q psy1686 193 SFLNRALESEMS-----PVVITATNRGVTKIRGTAYSSPHGIPI--DLLDRMV--IIPTQPYQDE--EIQAILKI----R 257 (448)
Q Consensus 193 ~~Llk~lEe~~~-----pi~IlaT~~~i~lI~~Ttenp~~~Ip~--~lLSR~~--ii~~~pys~~--eI~~IL~~----R 257 (448)
..|++.+|+-.. +..+ .-.+-+|.||++++.-.+-. +|..|+. .|++.|+.+. ||...++. -
T Consensus 191 ~kLl~~le~g~~~rvG~~~~~---~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~ 267 (403)
T COG1221 191 EKLLRVLEEGEYRRVGGSQPR---PVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSE 267 (403)
T ss_pred HHHHHHHHcCceEecCCCCCc---CCCceeeeccccCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHH
Confidence 999999998432 1111 12345788888888877877 8999774 7888999875 33222221 1
Q ss_pred c---------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy1686 258 L---------MQTDGLRVLTKIALDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 258 a---------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a 290 (448)
| .+++++..|-.+.--|+.|.--|.++.++..+
T Consensus 268 ~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 268 ARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred HHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHh
Confidence 1 55689999999888999999999999997665
No 175
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.46 E-value=0.0012 Score=71.62 Aligned_cols=132 Identities=17% Similarity=0.251 Sum_probs=88.5
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCC------eEEEEecCceeEeeccccCC------------C-------CCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSP------VVITATNRGVTKIRGTAYSS------------P-------HGIP 230 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p------i~IlaT~~~i~lI~~Ttenp------------~-------~~Ip 230 (448)
.++|||||++.++...++.|...+|+..-. .+. -.-.+.+|.+++..| + .+++
T Consensus 295 gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~--~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls 372 (506)
T PRK09862 295 NGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKIT--YPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLS 372 (506)
T ss_pred CCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCccee--ccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCC
Confidence 489999999999999999999999875410 000 011123333333222 0 3588
Q ss_pred hhhhhhcc-cccCCCCCHH-------------HHH-HHHH------Hh----------------c-CCHHHHHHHHHHc-
Q psy1686 231 IDLLDRMV-IIPTQPYQDE-------------EIQ-AILK------IR----------------L-MQTDGLRVLTKIA- 271 (448)
Q Consensus 231 ~~lLSR~~-ii~~~pys~~-------------eI~-~IL~------~R----------------a-i~deal~~La~~a- 271 (448)
.++|||+- .+.+.+.+.+ +++ .+++ .| | +++++..++....
T Consensus 373 ~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~ 452 (506)
T PRK09862 373 GPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLI 452 (506)
T ss_pred HhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 89999996 4666655322 232 1111 11 0 6777776665442
Q ss_pred -CCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 272 -LDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 272 -~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
.+-+.|-...+|..|..+|.-+++..|+.+||.++++.
T Consensus 453 ~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~y 491 (506)
T PRK09862 453 HLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSY 491 (506)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 14489999999999998888788899999999999985
No 176
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.40 E-value=0.0019 Score=66.04 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=78.9
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEE--EEecCceeEeeccccCC-----CCCCChhhhhhc--ccccCCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVI--TATNRGVTKIRGTAYSS-----PHGIPIDLLDRM--VIIPTQPYQ 246 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~I--laT~~~i~lI~~Ttenp-----~~~Ip~~lLSR~--~ii~~~pys 246 (448)
.|.||||||+.|....|..|++.+++......= -.....+-+|.+|+.++ ......+|+.|+ ..|.+.|+.
T Consensus 101 gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLR 180 (326)
T PRK11608 101 GGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLR 180 (326)
T ss_pred CCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChh
Confidence 488999999999999999999999874310000 00000122333333221 123568888887 378899998
Q ss_pred H--HHHHHHHHH-------h------c-CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy1686 247 D--EEIQAILKI-------R------L-MQTDGLRVLTKIALDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 247 ~--~eI~~IL~~-------R------a-i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a 290 (448)
. +||..++.. + . ++++++..|..+.=-|+.|.--|.+++++..+
T Consensus 181 eR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 181 ERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred hhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 6 466555432 1 1 79999999999988899999999999987654
No 177
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=97.39 E-value=0.0017 Score=65.60 Aligned_cols=123 Identities=8% Similarity=0.106 Sum_probs=89.0
Q ss_pred CeEEEEeccCCC---CHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCC---CCHH
Q psy1686 176 PGVLFIDEVHML---DIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQP---YQDE 248 (448)
Q Consensus 176 ~~VLfIDEVH~L---~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~p---ys~~ 248 (448)
+.+++|++.+.+ +++..+.|.+.++.++.. ++|+.+.+.. + .-.+.+..+...+.+..|.+ ++.+
T Consensus 62 ~rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~------d--~r~k~~k~l~k~~~~~~~~~~~~~~~~ 133 (326)
T PRK07452 62 GRLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKP------D--GRLKSTKLLQKLAEEKEFSLIPPWDTE 133 (326)
T ss_pred ceEEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCc------c--hHHHHHHHHHHceeEEEecCCCcccHH
Confidence 478999998776 567788999999987655 5555433311 0 01123455555566666554 4667
Q ss_pred HHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 249 EIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 249 eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++...++.++ |+++|+++|+... ++|++.+.|-|+....++. .++..||.++|+.+..
T Consensus 134 ~l~~~i~~~~~~~g~~i~~~a~~~L~~~~-g~dl~~l~~EleKL~ly~~-~~~~~It~~~V~~~v~ 197 (326)
T PRK07452 134 GLKQLVERTAQELGVKLTPEAAELLAEAV-GNDSRRLYNELEKLALYAE-NSTKPISAEEVKALVS 197 (326)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHh-CccHHHHHHHHHHHHHhcc-CCCCccCHHHHHHHhc
Confidence 7888888776 9999999999999 8999999999998877641 1245799999998864
No 178
>PRK15115 response regulator GlrR; Provisional
Probab=97.36 E-value=0.00067 Score=71.18 Aligned_cols=126 Identities=19% Similarity=0.251 Sum_probs=79.7
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEe---cCceeEeeccccCCC-----CCCChhhhhhc--ccccCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITAT---NRGVTKIRGTAYSSP-----HGIPIDLLDRM--VIIPTQPY 245 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT---~~~i~lI~~Ttenp~-----~~Ip~~lLSR~--~ii~~~py 245 (448)
.+.|||||||.|+.+.|..|++.+++.... -+..+ .-.+.+|.+|+.++. ..+..+|..|. ..|.+.|+
T Consensus 229 ~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~-~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpL 307 (444)
T PRK15115 229 GGTLFLDEIGDMPAPLQVKLLRVLQERKVR-PLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPAL 307 (444)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHhhCCEE-eCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhceeeecCCCh
Confidence 488999999999999999999999975310 00000 001223333332211 11234444443 24555666
Q ss_pred CH--HHHHHHHHH---hc----------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHH
Q psy1686 246 QD--EEIQAILKI---RL----------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRK 305 (448)
Q Consensus 246 s~--~eI~~IL~~---Ra----------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~ 305 (448)
.. +||..+++. +. ++++|++.|..+.--|+.|..-|.+++++..+ .+..|+.+++..
T Consensus 308 r~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~---~~~~i~~~~l~~ 379 (444)
T PRK15115 308 AERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT---SSPVISDALVEQ 379 (444)
T ss_pred HhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCccChhhhhh
Confidence 54 355433321 10 89999999999988899999999999997654 244688877754
No 179
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.34 E-value=0.0032 Score=63.98 Aligned_cols=239 Identities=16% Similarity=0.162 Sum_probs=133.1
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCC-CCcccccCCCCCcch-hh-hhhhccCccccccCCCccCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMV-WPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDGWLADV 104 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~g-pf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~~~~~~ 104 (448)
++-.++++--. .+-.||=..+..+..-|.+++..-+-.- |-+.+.|+.-+|||+ .+ -...- ...+|. .++.
T Consensus 22 l~~~eRI~~i~-~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h----p~~~d~-~~~~ 95 (302)
T PF05621_consen 22 LSDEERIAYIR-ADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH----PPQSDE-DAER 95 (302)
T ss_pred cCHHHHHHHHh-cCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC----CCCCCC-CCcc
Confidence 33344444333 3667999999999888888877544332 447889975337765 11 00000 011111 0001
Q ss_pred CC--ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCC-CCCCchHHHHHHHHHHHHHHHhCcccccCeEEEE
Q psy1686 105 TK--DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGD-TGEITPEVREQISAKVTEWREEGKAEIVPGVLFI 181 (448)
Q Consensus 105 ~~--fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~-~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfI 181 (448)
.+ ++++|.+.-.+ .+ -++= +.++...- .++=..+++.++.... ...| ..+|+|
T Consensus 96 ~PVv~vq~P~~p~~~-----------~~--Y~~I---L~~lgaP~~~~~~~~~~~~~~~~ll---r~~~-----vrmLII 151 (302)
T PF05621_consen 96 IPVVYVQMPPEPDER-----------RF--YSAI---LEALGAPYRPRDRVAKLEQQVLRLL---RRLG-----VRMLII 151 (302)
T ss_pred ccEEEEecCCCCChH-----------HH--HHHH---HHHhCcccCCCCCHHHHHHHHHHHH---HHcC-----CcEEEe
Confidence 11 45555443221 00 0000 11121111 1111133443333222 1223 489999
Q ss_pred eccCCCC-------HHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHH-HHHH
Q psy1686 182 DEVHMLD-------IECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEE-IQAI 253 (448)
Q Consensus 182 DEVH~L~-------~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~e-I~~I 253 (448)
||+|.+- .+..|+|-..-.+-..|+|.+.|...... +.--+.+-||+..+.+.++..++ ....
T Consensus 152 DE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~a---------l~~D~QLa~RF~~~~Lp~W~~d~ef~~L 222 (302)
T PF05621_consen 152 DEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRA---------LRTDPQLASRFEPFELPRWELDEEFRRL 222 (302)
T ss_pred echHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHH---------hccCHHHHhccCCccCCCCCCCcHHHHH
Confidence 9999972 24455554554554567775555542221 11236788999999999988654 3444
Q ss_pred HHH--hc---------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHH
Q psy1686 254 LKI--RL---------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKV 306 (448)
Q Consensus 254 L~~--Ra---------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~ 306 (448)
|.- +. -+++...+|-..+ +|..=.-.++|..|+..|...|...||.+.+..+
T Consensus 223 L~s~e~~LPLr~~S~l~~~~la~~i~~~s-~G~iG~l~~ll~~aA~~AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 223 LASFERALPLRKPSNLASPELARRIHERS-EGLIGELSRLLNAAAIAAIRSGEERITREILDKI 285 (302)
T ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHhcCCceecHHHHhhC
Confidence 431 11 4555558899998 8988899999999999888788889999888764
No 180
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.34 E-value=0.0011 Score=70.30 Aligned_cols=134 Identities=14% Similarity=0.175 Sum_probs=93.7
Q ss_pred CeEEEEeccCCCCH------------HHHHHHHHhhhhcCCC-eEEEEecCceeEeeccc--cCCCCCCChhhhhhcc-c
Q psy1686 176 PGVLFIDEVHMLDI------------ECFSFLNRALESEMSP-VVITATNRGVTKIRGTA--YSSPHGIPIDLLDRMV-I 239 (448)
Q Consensus 176 ~~VLfIDEVH~L~~------------~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Tt--enp~~~Ip~~lLSR~~-i 239 (448)
.||+|||||+-+.. ..|..|||.+|...-. ....-.++.|-+|.+-. ...|..+-|.|..|+- +
T Consensus 248 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~ 327 (441)
T TIGR00390 248 SGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIR 327 (441)
T ss_pred CCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceE
Confidence 48999999998842 3699999999975421 11122344565554432 2223346689999996 8
Q ss_pred ccCCCCCHHHHHHHHHH---------hc----------CCHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHhhhh
Q psy1686 240 IPTQPYQDEEIQAILKI---------RL----------MQTDGLRVLTKIAL-------DTSLRYAIQLITTASVVCRRR 293 (448)
Q Consensus 240 i~~~pys~~eI~~IL~~---------Ra----------i~deal~~La~~a~-------~Gd~R~AL~lLe~a~~~a~~~ 293 (448)
+.|++|+.+++..||.. .+ ++++|+..||+.|. +..+|.--.+++....-+.-+
T Consensus 328 v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe 407 (441)
T TIGR00390 328 VELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFE 407 (441)
T ss_pred EECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhc
Confidence 99999999999999952 11 89999999999973 569999999999876422111
Q ss_pred C------CCcccHHHHHHHHHH
Q psy1686 294 K------ATEICMEDIRKVYAL 309 (448)
Q Consensus 294 ~------~~~It~e~V~~~~~l 309 (448)
. .-.||.+.|+..+.-
T Consensus 408 ~p~~~~~~v~I~~~~V~~~l~~ 429 (441)
T TIGR00390 408 APDLSGQNITIDADYVSKKLGA 429 (441)
T ss_pred CCCCCCCEEEECHHHHHhHHHH
Confidence 1 125888888766653
No 181
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.34 E-value=0.00094 Score=70.80 Aligned_cols=133 Identities=14% Similarity=0.125 Sum_probs=93.1
Q ss_pred CeEEEEeccCCCCH------------HHHHHHHHhhhhcCCC-eEEEEecCceeEeecc--c-cCCCCCCChhhhhhcc-
Q psy1686 176 PGVLFIDEVHMLDI------------ECFSFLNRALESEMSP-VVITATNRGVTKIRGT--A-YSSPHGIPIDLLDRMV- 238 (448)
Q Consensus 176 ~~VLfIDEVH~L~~------------~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~T--t-enp~~~Ip~~lLSR~~- 238 (448)
.||+|||||+-+.. ..|..|||.+|...-. ...--.|+.|-+|.+= . ..|+ .+-|.|..|+-
T Consensus 250 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~-DlIPEl~GR~Pi 328 (443)
T PRK05201 250 NGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPS-DLIPELQGRFPI 328 (443)
T ss_pred CCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChh-hccHHHhCccce
Confidence 48999999998842 3689999999975422 1111234455555332 2 2343 46689999996
Q ss_pred cccCCCCCHHHHHHHHHH--h-------c----------CCHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHhhh
Q psy1686 239 IIPTQPYQDEEIQAILKI--R-------L----------MQTDGLRVLTKIAL-------DTSLRYAIQLITTASVVCRR 292 (448)
Q Consensus 239 ii~~~pys~~eI~~IL~~--R-------a----------i~deal~~La~~a~-------~Gd~R~AL~lLe~a~~~a~~ 292 (448)
++.|+||+.+++..||.. . + ++++|++.||+.|. +..+|.--.+++....-..-
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~F 408 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISF 408 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhc
Confidence 899999999999999952 1 1 99999999999973 55999999999988643211
Q ss_pred ----hCC--CcccHHHHHHHHHH
Q psy1686 293 ----RKA--TEICMEDIRKVYAL 309 (448)
Q Consensus 293 ----~~~--~~It~e~V~~~~~l 309 (448)
... -.||.+.|+..++-
T Consensus 409 e~p~~~~~~v~I~~~~V~~~l~~ 431 (443)
T PRK05201 409 EAPDMSGETVTIDAAYVDEKLGD 431 (443)
T ss_pred cCCCCCCCEEEECHHHHHHHHHH
Confidence 111 25888888766653
No 182
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.31 E-value=0.0029 Score=68.36 Aligned_cols=114 Identities=19% Similarity=0.258 Sum_probs=78.1
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEe----cCceeEeeccccCC-----CCCCChhhhhhcc--cccCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITAT----NRGVTKIRGTAYSS-----PHGIPIDLLDRMV--IIPTQP 244 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT----~~~i~lI~~Ttenp-----~~~Ip~~lLSR~~--ii~~~p 244 (448)
.+.||||||+.|..+.|..|++.+++.....+ .. .-.+-+|.+|+.+. ......+|..|.. .|.+.|
T Consensus 282 gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPp 359 (509)
T PRK05022 282 GGTLFLDEIGELPLALQAKLLRVLQYGEIQRV--GSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPP 359 (509)
T ss_pred CCEEEecChhhCCHHHHHHHHHHHhcCCEeeC--CCCcceecceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCC
Confidence 48899999999999999999999987431000 00 00122333333221 1224577777763 577888
Q ss_pred CCH--HHHHHHHHH---hc----------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhh
Q psy1686 245 YQD--EEIQAILKI---RL----------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCR 291 (448)
Q Consensus 245 ys~--~eI~~IL~~---Ra----------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~ 291 (448)
|.+ +||..+.+. +. ++++|+..|..+.=-|+.|.--|.+++|+..+.
T Consensus 360 LreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 360 LRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred chhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 876 466544331 11 999999999999888999999999999987763
No 183
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=97.28 E-value=0.002 Score=70.36 Aligned_cols=128 Identities=17% Similarity=0.221 Sum_probs=80.4
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEe---cCceeEeeccccCCCC-----CCChhhhhhc--ccccCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITAT---NRGVTKIRGTAYSSPH-----GIPIDLLDRM--VIIPTQPY 245 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT---~~~i~lI~~Ttenp~~-----~Ip~~lLSR~--~ii~~~py 245 (448)
.|.||||||+.|..+.|..|++.+|+.....+ ..+ .-.+-+|.+|+.++.. ....+|..|+ ..+++.||
T Consensus 323 gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~-G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPL 401 (538)
T PRK15424 323 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRV-GGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPL 401 (538)
T ss_pred CCEEEEcChHhCCHHHHHHHHhhhhcCeEEec-CCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCCh
Confidence 48899999999999999999999997431100 000 0112233333333111 1235677775 47888898
Q ss_pred CH--HHHHHHHHH---h-c------CCHHHH-------HHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHH
Q psy1686 246 QD--EEIQAILKI---R-L------MQTDGL-------RVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIR 304 (448)
Q Consensus 246 s~--~eI~~IL~~---R-a------i~deal-------~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~ 304 (448)
.+ +||..+... + + ++++++ +.|..+.--|+.|.--|++++++.++.......|+.+++.
T Consensus 402 ReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 402 RERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred hhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHhh
Confidence 86 466544431 1 1 566655 6777777789999999999999876532222456666553
No 184
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.25 E-value=0.0032 Score=65.93 Aligned_cols=112 Identities=14% Similarity=0.132 Sum_probs=66.1
Q ss_pred hhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCH----------H-H-HHHHHHhhhhc--------
Q psy1686 143 LFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDI----------E-C-FSFLNRALESE-------- 202 (448)
Q Consensus 143 ~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~----------~-~-f~~Llk~lEe~-------- 202 (448)
++++--+|--.-||+....|...-...+ .|.|||||||+-+-. . . +..|+..++.+
T Consensus 184 L~sk~vGEsEk~IR~~F~~A~~~a~~~~----aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~ 259 (413)
T PLN00020 184 LESENAGEPGKLIRQRYREAADIIKKKG----KMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGD 259 (413)
T ss_pred hhcCcCCcHHHHHHHHHHHHHHHhhccC----CCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCcccccccc
Confidence 4555556666889988877643211223 589999999997732 1 1 23455554432
Q ss_pred ------CCC-eEEEEecCceeEeeccccCCCCCCChhhhh--hcccccCCCCCHHHHHHHHHHhc----CCHHHHHHHHH
Q psy1686 203 ------MSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMVIIPTQPYQDEEIQAILKIRL----MQTDGLRVLTK 269 (448)
Q Consensus 203 ------~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~ii~~~pys~~eI~~IL~~Ra----i~deal~~La~ 269 (448)
..+ .+|.+||+ |..|+++|+. |+-.+.. .-+.++-.+||+.-. ++.+.+..|++
T Consensus 260 w~~~~~~~~V~VIaTTNr------------pd~LDpALlRpGRfDk~i~-lPd~e~R~eIL~~~~r~~~l~~~dv~~Lv~ 326 (413)
T PLN00020 260 WREKEEIPRVPIIVTGND------------FSTLYAPLIRDGRMEKFYW-APTREDRIGVVHGIFRDDGVSREDVVKLVD 326 (413)
T ss_pred ccccccCCCceEEEeCCC------------cccCCHhHcCCCCCCceeC-CCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 122 23333333 7789999998 7743322 346777778877322 66666666665
Q ss_pred Hc
Q psy1686 270 IA 271 (448)
Q Consensus 270 ~a 271 (448)
.-
T Consensus 327 ~f 328 (413)
T PLN00020 327 TF 328 (413)
T ss_pred cC
Confidence 53
No 185
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=97.21 E-value=0.0029 Score=63.76 Aligned_cols=121 Identities=15% Similarity=0.211 Sum_probs=84.4
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhh---cCC-C-eEEEEecCceeEeeccccCCCCCC---ChhhhhhcccccCCCCCH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALES---EMS-P-VVITATNRGVTKIRGTAYSSPHGI---PIDLLDRMVIIPTQPYQD 247 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe---~~~-p-i~IlaT~~~i~lI~~Ttenp~~~I---p~~lLSR~~ii~~~pys~ 247 (448)
+.+++|++++.+.....+..++.+.+ ++. + .+++...+. .....++ -.++.++|.++.+.+++.
T Consensus 77 ~klvii~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~li~~~~~--------~~~~~k~~k~~k~~~~~~~~~~~~~~~~ 148 (340)
T PRK05574 77 RKLVELRLPEFLTGAKGEKALKRLEAYLNPLPHPDLLLIVRLPK--------LDKAKKKSAWFKALKKKAVVVEAQPPKE 148 (340)
T ss_pred CeEEEEECCCCCCchhHHHHHHHHHHhccCCCCCcEEEEEECCc--------CCHHHHhhHHHHHHHhCceEEEcCCCCH
Confidence 47899999999966533333333333 232 2 222222221 0111112 356777899999999999
Q ss_pred HHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 248 EEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 248 ~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
.++...++..+ ++++|+++|++.. ++|++.+.+-|+....++. ++. ||.++|+++..
T Consensus 149 ~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~-~~d~~~l~~El~KL~l~~~--~~~-It~~~I~~~i~ 211 (340)
T PRK05574 149 AELPQWIQQRLKQQGLQIDAAALQLLAERV-EGNLLALAQELEKLALLYP--DGK-ITLEDVEEAVP 211 (340)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-CchHHHHHHHHHHHHhhcC--CCC-CCHHHHHHHHh
Confidence 99988887655 9999999999999 8999999999999877652 233 99999998875
No 186
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.20 E-value=0.0028 Score=63.03 Aligned_cols=139 Identities=23% Similarity=0.259 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhc---CCCeEEEEecCceeEeeccccCC--CCCC
Q psy1686 155 VREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESE---MSPVVITATNRGVTKIRGTAYSS--PHGI 229 (448)
Q Consensus 155 iR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~---~~pi~IlaT~~~i~lI~~Ttenp--~~~I 229 (448)
+=+++++........|+. +.++++||.|-|+.+....|....+=. -.| -.+.+||=..-+| -...
T Consensus 114 ~~e~~~~~L~al~~~g~r---~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~-------l~ivL~Gqp~L~~~lr~~~ 183 (269)
T COG3267 114 VLEQIDRELAALVKKGKR---PVVLMVDEAHDLNDSALEALRLLTNLEEDSSKL-------LSIVLIGQPKLRPRLRLPV 183 (269)
T ss_pred HHHHHHHHHHHHHHhCCC---CeEEeehhHhhhChhHHHHHHHHHhhcccccCc-------eeeeecCCcccchhhchHH
Confidence 334566666666667753 589999999999999888877665421 122 1234455444333 2222
Q ss_pred Chhhhhhccc-ccCCCCCHHHHHHHHHHhc---------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCccc
Q psy1686 230 PIDLLDRMVI-IPTQPYQDEEIQAILKIRL---------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEIC 299 (448)
Q Consensus 230 p~~lLSR~~i-i~~~pys~~eI~~IL~~Ra---------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It 299 (448)
-..+--||.+ |.+.||+.++....|+.|. ++++++.+|...+ +|-+|---++...|...|...++..|+
T Consensus 184 l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~s-qg~P~lin~~~~~Al~~a~~a~~~~v~ 262 (269)
T COG3267 184 LRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEAS-QGIPRLINNLATLALDAAYSAGEDGVS 262 (269)
T ss_pred HHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHh-ccchHHHHHHHHHHHHHHHHcCCCccc
Confidence 3477789998 9999999998888777654 9999999999998 998988888888887766556677788
Q ss_pred HHHHH
Q psy1686 300 MEDIR 304 (448)
Q Consensus 300 ~e~V~ 304 (448)
...++
T Consensus 263 ~a~~~ 267 (269)
T COG3267 263 EAEIK 267 (269)
T ss_pred hhhcc
Confidence 76654
No 187
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=97.15 E-value=0.00039 Score=67.03 Aligned_cols=28 Identities=36% Similarity=0.576 Sum_probs=25.1
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhc
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESE 202 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~ 202 (448)
..||||+||+..|++...+.|...+|+-
T Consensus 106 h~GVLflDE~~ef~~~vld~Lr~ple~g 133 (206)
T PF01078_consen 106 HRGVLFLDELNEFDRSVLDALRQPLEDG 133 (206)
T ss_dssp TTSEEEECETTTS-HHHHHHHHHHHHHS
T ss_pred cCCEEEechhhhcCHHHHHHHHHHHHCC
Confidence 4599999999999999999999999985
No 188
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0069 Score=66.71 Aligned_cols=214 Identities=21% Similarity=0.274 Sum_probs=123.8
Q ss_pred CccccccccccchhhhhhhHHHHHHHhcCC--------CC-CCCcccccCCCCCcch-hhhhhhccCccccccCCCccCC
Q psy1686 35 EPRKVSQGMVGQLQARRAAGVVLGMIKEEV--------VM-VWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADV 104 (448)
Q Consensus 35 ~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~k--------i~-gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~ 104 (448)
.++..|.++-|.+.++....=+++-.++.+ |+ | +.+.|||.+|||. ||-.+. +.+
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkG--vlLvGpPGTGKTLLAkAvAg-------EA~------ 208 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKG--VLLVGPPGTGKTLLAKAVAG-------EAG------ 208 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccc--eeEecCCCCCcHHHHHHHhc-------ccC------
Confidence 344568999999999999888888888543 33 6 7788998557775 552211 111
Q ss_pred CCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 105 TKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 105 ~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
.+|... +-| .|-.+|.|. +. +.+|+-..++.+ . -|+|+||||+
T Consensus 209 VPFf~i----------------------SGS---~FVemfVGv-GA--sRVRdLF~qAkk------~---aP~IIFIDEi 251 (596)
T COG0465 209 VPFFSI----------------------SGS---DFVEMFVGV-GA--SRVRDLFEQAKK------N---APCIIFIDEI 251 (596)
T ss_pred CCceec----------------------cch---hhhhhhcCC-Cc--HHHHHHHHHhhc------c---CCCeEEEehh
Confidence 123220 011 133344444 11 788887766532 2 2799999999
Q ss_pred CCCCH-----------H---HHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhh--hc-ccccCCCCCH
Q psy1686 185 HMLDI-----------E---CFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLD--RM-VIIPTQPYQD 247 (448)
Q Consensus 185 H~L~~-----------~---~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~-~ii~~~pys~ 247 (448)
+-..+ + ..|-|+--++-+- +|.++++|.||+- |--+-++||- |+ ..+.....+.
T Consensus 252 DAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~-------~~~gviviaaTNR--pdVlD~ALlRpgRFDRqI~V~~PDi 322 (596)
T COG0465 252 DAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG-------GNEGVIVIAATNR--PDVLDPALLRPGRFDRQILVELPDI 322 (596)
T ss_pred hhcccccCCCCCCCchHHHHHHHHHHhhhccCC-------CCCceEEEecCCC--cccchHhhcCCCCcceeeecCCcch
Confidence 98854 2 3444444444332 3344455555431 1113234331 22 1333444555
Q ss_pred HHHHHHHHHhc----CCHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 248 EEIQAILKIRL----MQTDG-LRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 248 ~eI~~IL~~Ra----i~dea-l~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
..-++||+..+ +++++ +..||+..-+-+.-+--|++-.|+.+|-+++...|+..++.++...
T Consensus 323 ~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~dr 389 (596)
T COG0465 323 KGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDR 389 (596)
T ss_pred hhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHH
Confidence 55577777433 44333 4447777522255566677766777766678889999999999874
No 189
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.12 E-value=0.0058 Score=70.04 Aligned_cols=135 Identities=19% Similarity=0.198 Sum_probs=84.3
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCC---CeEEEEe-cCceeEeecccc-----C------CCCCCChhhhhhc-cc
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMS---PVVITAT-NRGVTKIRGTAY-----S------SPHGIPIDLLDRM-VI 239 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~---pi~IlaT-~~~i~lI~~Tte-----n------p~~~Ip~~lLSR~-~i 239 (448)
.|++||||++.++...|.+|+.++|+..- ..=+.++ +....+|.+++. + --..+|++||||+ +|
T Consensus 558 gGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLI 637 (915)
T PTZ00111 558 GGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLI 637 (915)
T ss_pred CCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEE
Confidence 48999999999999999999999987531 0000000 111123333321 1 1355899999999 55
Q ss_pred ccCCCCCHH------------------------------------------------------HHHHHHHH-h--c---C
Q psy1686 240 IPTQPYQDE------------------------------------------------------EIQAILKI-R--L---M 259 (448)
Q Consensus 240 i~~~pys~~------------------------------------------------------eI~~IL~~-R--a---i 259 (448)
|-+.....+ -|++-|.+ | + +
T Consensus 638 f~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~P~L 717 (915)
T PTZ00111 638 YLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFPKL 717 (915)
T ss_pred EEecCCCChHHHHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHHHHHHHHHhccCCCCC
Confidence 544333222 22222221 1 1 8
Q ss_pred CHHHHHHHHHH-----cC-------------------------CC------CHHHHHHHHHHHHHHhhhhCCCcccHHHH
Q psy1686 260 QTDGLRVLTKI-----AL-------------------------DT------SLRYAIQLITTASVVCRRRKATEICMEDI 303 (448)
Q Consensus 260 ~deal~~La~~-----a~-------------------------~G------d~R~AL~lLe~a~~~a~~~~~~~It~e~V 303 (448)
+++|.++|.++ .. .| ++|..-.++..|-..|+.+-+..|+.+||
T Consensus 718 s~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv 797 (915)
T PTZ00111 718 SDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTPADA 797 (915)
T ss_pred CHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHhhhcCcCcccHHHH
Confidence 99999888653 10 11 47888888887766676556678999999
Q ss_pred HHHHHHh
Q psy1686 304 RKVYALF 310 (448)
Q Consensus 304 ~~~~~lf 310 (448)
+++..++
T Consensus 798 ~~Ai~L~ 804 (915)
T PTZ00111 798 LQAVQIV 804 (915)
T ss_pred HHHHHHH
Confidence 9999875
No 190
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.10 E-value=0.0041 Score=69.61 Aligned_cols=115 Identities=23% Similarity=0.303 Sum_probs=76.0
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEE--EEecCceeEeeccccCCC-----CCCChhhhhhc--ccccCCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVI--TATNRGVTKIRGTAYSSP-----HGIPIDLLDRM--VIIPTQPYQ 246 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~I--laT~~~i~lI~~Ttenp~-----~~Ip~~lLSR~--~ii~~~pys 246 (448)
.+.||||||+.|..+.|..|++.+++.....+= -....++-+|.+|+.++. -....+|..|. ..|.+.|+.
T Consensus 471 ~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLr 550 (686)
T PRK15429 471 KSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLR 550 (686)
T ss_pred CCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChh
Confidence 489999999999999999999999874210000 000011223333332211 11334566663 467888887
Q ss_pred H--HHHHHHHHH-------hc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy1686 247 D--EEIQAILKI-------RL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 247 ~--~eI~~IL~~-------Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a 290 (448)
+ +||..+++. +. +++++++.|..+.--|+.|.--|.+++|+..+
T Consensus 551 eR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 551 ERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred hhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 6 466544431 10 89999999999988999999999999998765
No 191
>KOG0731|consensus
Probab=97.04 E-value=0.01 Score=66.76 Aligned_cols=212 Identities=20% Similarity=0.239 Sum_probs=120.9
Q ss_pred cccccccchhhhhhhHHHHHHHhcCC--------CC-CCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCcc
Q psy1686 39 VSQGMVGQLQARRAAGVVLGMIKEEV--------VM-VWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDL 108 (448)
Q Consensus 39 ~~~~~VGQ~~~r~a~~~l~~mI~~~k--------i~-gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv 108 (448)
.|.++.|++.++...-=+++-.++.+ ++ | +++.|||.+|||- ||.. |.+.+ .+|+
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkG--vLL~GPPGTGKTLLAKAi-------AGEAg------VPF~ 373 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKG--VLLVGPPGTGKTLLAKAI-------AGEAG------VPFF 373 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCc--eEEECCCCCcHHHHHHHH-------hcccC------Ccee
Confidence 48999999999999777777666543 22 7 7889999558874 5532 12222 3666
Q ss_pred ccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCC
Q psy1686 109 RCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLD 188 (448)
Q Consensus 109 ~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~ 188 (448)
+|--.| |-.++-|.. .+.+|+....+.. . .|.|+||||++-+.
T Consensus 374 svSGSE-------------------------FvE~~~g~~---asrvr~lf~~ar~------~---aP~iifideida~~ 416 (774)
T KOG0731|consen 374 SVSGSE-------------------------FVEMFVGVG---ASRVRDLFPLARK------N---APSIIFIDEIDAVG 416 (774)
T ss_pred eechHH-------------------------HHHHhcccc---hHHHHHHHHHhhc------c---CCeEEEeccccccc
Confidence 642222 444444442 2777776655421 2 48999999998774
Q ss_pred H------------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhh--hc-ccccCCCCCHHHHHHH
Q psy1686 189 I------------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLD--RM-VIIPTQPYQDEEIQAI 253 (448)
Q Consensus 189 ~------------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~-~ii~~~pys~~eI~~I 253 (448)
. +.-+.||..+=+-... .++.+++++++|+ + +-.+-++||- |+ ..|....-+...=.+|
T Consensus 417 ~~r~G~~~~~~~~e~e~tlnQll~emDgf----~~~~~vi~~a~tn-r-~d~ld~allrpGRfdr~i~i~~p~~~~r~~i 490 (774)
T KOG0731|consen 417 RKRGGKGTGGGQDEREQTLNQLLVEMDGF----ETSKGVIVLAATN-R-PDILDPALLRPGRFDRQIQIDLPDVKGRASI 490 (774)
T ss_pred ccccccccCCCChHHHHHHHHHHHHhcCC----cCCCcEEEEeccC-C-ccccCHHhcCCCccccceeccCCchhhhHHH
Confidence 3 3334444444332211 1223333444432 1 3334444442 22 1344455555555677
Q ss_pred HHHhc----CC--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 254 LKIRL----MQ--TDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 254 L~~Ra----i~--deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++..+ .+ +.-+.-||....+-+.-+--|+...|...|-+++...|+..++..+..
T Consensus 491 ~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~ 551 (774)
T KOG0731|consen 491 LKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIE 551 (774)
T ss_pred HHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHH
Confidence 77544 43 333333555552335555566666776666566778899999998887
No 192
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.00 E-value=0.0054 Score=64.65 Aligned_cols=127 Identities=20% Similarity=0.273 Sum_probs=88.0
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEE---EecCceeEeeccccCC-----CCCCChhhhhhc--ccccCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVIT---ATNRGVTKIRGTAYSS-----PHGIPIDLLDRM--VIIPTQPY 245 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~Il---aT~~~i~lI~~Ttenp-----~~~Ip~~lLSR~--~ii~~~py 245 (448)
.+.||||||+.|+.+.|..|++.+++.....+ - ...-++-+|.+|+.++ ......+|+.|+ ..|.+.||
T Consensus 229 ~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~-~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpL 307 (463)
T TIGR01818 229 GGTLFLDEIGDMPLDAQTRLLRVLADGEFYRV-GGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPL 307 (463)
T ss_pred CCeEEEEchhhCCHHHHHHHHHHHhcCcEEEC-CCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCc
Confidence 48899999999999999999999987431000 0 0000122333333221 112345888886 47888999
Q ss_pred C--HHHHHHHHHHhc-------------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHH
Q psy1686 246 Q--DEEIQAILKIRL-------------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKV 306 (448)
Q Consensus 246 s--~~eI~~IL~~Ra-------------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~ 306 (448)
. .+||..++.... ++++|+..|..+.--|+.|.--|.++++...+. +..|+.+++...
T Consensus 308 r~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~---~~~i~~~~l~~~ 380 (463)
T TIGR01818 308 RERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMAS---GDEVLVSDLPAE 380 (463)
T ss_pred ccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC---CCcccHHhchHH
Confidence 9 678876655311 899999999999889999999999999987652 346888877543
No 193
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=96.96 E-value=0.007 Score=64.92 Aligned_cols=219 Identities=21% Similarity=0.276 Sum_probs=125.0
Q ss_pred cccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcc-hhh-hhhhccCccccccCCCccCCCCccccCCCccc
Q psy1686 39 VSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQK-VKK-ISTATGREEEPDYDGWLADVTKDLRCPDGELQ 116 (448)
Q Consensus 39 ~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKt-t~~-I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~ 116 (448)
...++||+..+... ++++|++=--+.-.+.++|.-.+||- +|+ |-..+.+- +.+||.+.||-+.
T Consensus 139 ~~~~liG~S~am~~---l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~-----------~~PFVavNcaAip 204 (464)
T COG2204 139 LGGELVGESPAMQQ---LRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRA-----------KGPFIAVNCAAIP 204 (464)
T ss_pred ccCCceecCHHHHH---HHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCccc-----------CCCceeeecccCC
Confidence 46899999998765 56665432112244678885423663 355 33222211 2478887777654
Q ss_pred ceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHH
Q psy1686 117 KRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLN 196 (448)
Q Consensus 117 k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Ll 196 (448)
. +|.| |.+|.-.+|.-|.-.+..+.. .+. + ..|.||+|||.-+..+.|.-|+
T Consensus 205 ~--------~l~E-----------SELFGhekGAFTGA~~~r~G~-----fE~--A--~GGTLfLDEI~~mpl~~Q~kLL 256 (464)
T COG2204 205 E--------NLLE-----------SELFGHEKGAFTGAITRRIGR-----FEQ--A--NGGTLFLDEIGEMPLELQVKLL 256 (464)
T ss_pred H--------HHHH-----------HHhhcccccCcCCcccccCcc-----eeE--c--CCceEEeeccccCCHHHHHHHH
Confidence 2 1111 112322333333222221111 011 1 2489999999999999999999
Q ss_pred HhhhhcCCCeEEEEe----cCceeEeeccccCCC-----CCCChhhhhhccc--ccCCCCCH--HHHHHHHHH---hc--
Q psy1686 197 RALESEMSPVVITAT----NRGVTKIRGTAYSSP-----HGIPIDLLDRMVI--IPTQPYQD--EEIQAILKI---RL-- 258 (448)
Q Consensus 197 k~lEe~~~pi~IlaT----~~~i~lI~~Ttenp~-----~~Ip~~lLSR~~i--i~~~pys~--~eI~~IL~~---Ra-- 258 (448)
|++|+-.-..+ .. .-.+-+|.+|+.|.. -..=.+|.-|.-+ +++.||-+ +||--+... ++
T Consensus 257 RvLqe~~~~rv--G~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~ 334 (464)
T COG2204 257 RVLQEREFERV--GGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAA 334 (464)
T ss_pred HHHHcCeeEec--CCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHH
Confidence 99998642111 00 001123334432211 1123567777653 44566654 455333221 21
Q ss_pred --------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHH
Q psy1686 259 --------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIR 304 (448)
Q Consensus 259 --------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~ 304 (448)
++++|+..|..+.=-|+.|.--|.+++++..+. +..|+.+++.
T Consensus 335 ~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~~---~~~i~~~~l~ 385 (464)
T COG2204 335 ELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVILSE---GPEIEVEDLP 385 (464)
T ss_pred HcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcCC---ccccchhhcc
Confidence 999999999999888999999999999988763 3457776654
No 194
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.96 E-value=0.0063 Score=67.75 Aligned_cols=133 Identities=20% Similarity=0.243 Sum_probs=89.7
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeE-----E----EEe---cCceeEeeccccCCCCCCChhhhhhccc----
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVV-----I----TAT---NRGVTKIRGTAYSSPHGIPIDLLDRMVI---- 239 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~-----I----laT---~~~i~lI~~Ttenp~~~Ip~~lLSR~~i---- 239 (448)
.|+|||||+..|+..+|+.|++++++...... . +.+ .-.+.+|.+++.+....+.++|++|+-.
T Consensus 227 GGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~rfk~~~v~ 306 (637)
T PRK13765 227 KGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRSRIKGYGYE 306 (637)
T ss_pred CcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHHHHhccCeEE
Confidence 49999999999999999999999976431110 0 000 0123455555555556678999999842
Q ss_pred ccCCC---CCHHHHHHHHHH---hc--------CCHHHHHHHHHHcC----CC-----CHHHHHHHHHHHHHHhhhhCCC
Q psy1686 240 IPTQP---YQDEEIQAILKI---RL--------MQTDGLRVLTKIAL----DT-----SLRYAIQLITTASVVCRRRKAT 296 (448)
Q Consensus 240 i~~~p---ys~~eI~~IL~~---Ra--------i~deal~~La~~a~----~G-----d~R~AL~lLe~a~~~a~~~~~~ 296 (448)
+.|.. -+.+.....+.. ++ ++++|+..|.+.+. .- ..|..-+++..|...|..++..
T Consensus 307 v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~ 386 (637)
T PRK13765 307 VYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAE 386 (637)
T ss_pred EEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhhccc
Confidence 34443 234444444332 11 89999988888742 21 3788888999988888777788
Q ss_pred cccHHHHHHHHH
Q psy1686 297 EICMEDIRKVYA 308 (448)
Q Consensus 297 ~It~e~V~~~~~ 308 (448)
.|+.+||.++..
T Consensus 387 ~i~~~~v~~a~~ 398 (637)
T PRK13765 387 LTTAEHVLEAKK 398 (637)
T ss_pred eecHHHHHHHHH
Confidence 899999988764
No 195
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.017 Score=61.90 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=24.0
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhc
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESE 202 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~ 202 (448)
..||||+||.-.|.....++|---+|+-
T Consensus 283 H~GVLFLDElpef~~~iLe~LR~PLE~g 310 (490)
T COG0606 283 HNGVLFLDELPEFKRSILEALREPLENG 310 (490)
T ss_pred cCCEEEeeccchhhHHHHHHHhCccccC
Confidence 3599999999999998888888888864
No 196
>KOG1970|consensus
Probab=96.84 E-value=0.018 Score=62.64 Aligned_cols=108 Identities=14% Similarity=0.156 Sum_probs=74.8
Q ss_pred cCeEEEEeccCCCCH-----HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcc--cccCCCCCH
Q psy1686 175 VPGVLFIDEVHMLDI-----ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV--IIPTQPYQD 247 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~-----~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~--ii~~~pys~ 247 (448)
.+++++|||+=.... ..++.|.........|+++.-|+- .+.+ ..|++-..|.++--+|. .|.|.|...
T Consensus 194 ~~~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~---~~~g-~nnq~rlf~~d~q~~~ri~~IsFNPIa~ 269 (634)
T KOG1970|consen 194 DKKLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDS---LSNG-NNNQDRLFPKDIQEEPRISNISFNPIAP 269 (634)
T ss_pred CceEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEecc---ccCC-CcchhhhchhhhhhccCcceEeecCCcH
Confidence 357899999855432 234445555555567866666664 2222 23445556677766664 899999999
Q ss_pred HHHHHHHHHhc------CC------HHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy1686 248 EEIQAILKIRL------MQ------TDGLRVLTKIALDTSLRYAIQLITTAS 287 (448)
Q Consensus 248 ~eI~~IL~~Ra------i~------deal~~La~~a~~Gd~R~AL~lLe~a~ 287 (448)
.=|++-|+.-| .+ ...++.|+..+ +||+|-|||.|...+
T Consensus 270 T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s-~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 270 TIMKKFLKRICRIEANKKSGIKVPDTAEVELICQGS-GGDIRSAINSLQLSS 320 (634)
T ss_pred HHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHhc-CccHHHHHhHhhhhc
Confidence 99999988544 33 45578888888 999999999999774
No 197
>KOG2004|consensus
Probab=96.76 E-value=0.0041 Score=69.21 Aligned_cols=92 Identities=29% Similarity=0.375 Sum_probs=58.7
Q ss_pred CeEEEEeccCCCCH----HHHHHHHHhhhhc----C-----------CCeEEEEecCceeEeeccccCCCCCCChhhhhh
Q psy1686 176 PGVLFIDEVHMLDI----ECFSFLNRALESE----M-----------SPVVITATNRGVTKIRGTAYSSPHGIPIDLLDR 236 (448)
Q Consensus 176 ~~VLfIDEVH~L~~----~~f~~Llk~lEe~----~-----------~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR 236 (448)
-.++.||||+-+.. +--++|+..+.-. + +-++.+||-. ..-.||++||+|
T Consensus 506 NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN-----------~idtIP~pLlDR 574 (906)
T KOG2004|consen 506 NPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTAN-----------VIDTIPPPLLDR 574 (906)
T ss_pred CceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEecc-----------ccccCChhhhhh
Confidence 47888999999864 2245555555421 1 1133334432 255699999999
Q ss_pred cccccCCCCCHHHHHHHHHH----hc------------CCHHHHH-HHHHHcCCCCHHH
Q psy1686 237 MVIIPTQPYQDEEIQAILKI----RL------------MQTDGLR-VLTKIALDTSLRY 278 (448)
Q Consensus 237 ~~ii~~~pys~~eI~~IL~~----Ra------------i~deal~-~La~~a~~Gd~R~ 278 (448)
+-+|.+.-|..+|=..|-++ ++ ++++|+. +|.+++-+...|.
T Consensus 575 MEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRn 633 (906)
T KOG2004|consen 575 MEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRN 633 (906)
T ss_pred hheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHH
Confidence 99999999999986666553 11 8888864 4555553334444
No 198
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.0018 Score=72.00 Aligned_cols=126 Identities=24% Similarity=0.244 Sum_probs=78.2
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhcC-----------------C--C---eEEEEecCce---------eEeec---
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESEM-----------------S--P---VVITATNRGV---------TKIRG--- 220 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~~-----------------~--p---i~IlaT~~~i---------~lI~~--- 220 (448)
..|||||||+-.|....++.++|++++.- . | ++|++-|... .++.+
T Consensus 225 ngGVLiIdei~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~~r~~g~~y 304 (647)
T COG1067 225 NGGVLIIDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDRSRIEGFGY 304 (647)
T ss_pred cCcEEEEEhhhhhCcHHHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHHHHHhhcccCHHHHhhcce
Confidence 35999999999999888888888888761 0 1 4444444321 01111
Q ss_pred -cccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHh--c--CCHHHHHHHHHHcC---------CCCHHHHHHHHHHH
Q psy1686 221 -TAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIR--L--MQTDGLRVLTKIAL---------DTSLRYAIQLITTA 286 (448)
Q Consensus 221 -Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~R--a--i~deal~~La~~a~---------~Gd~R~AL~lLe~a 286 (448)
.+.+.+-.++++..+||.-+. .+-+... . ++.+|+..|.+.|. .-.+|...+++..|
T Consensus 305 ~ae~~~~m~~~~~nr~k~~~~~---------~q~v~~d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~~A 375 (647)
T COG1067 305 EAEFEDTMPITDANRSKLVQFY---------VQELARDGNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVREA 375 (647)
T ss_pred EEEEcCCCCCChHHHHHHHHHH---------HHHHHhcCCCCCCCHHHHHHHHHHHHHhccccceeccCHHHHHHHHHHh
Confidence 111122233344444442211 1111111 1 77788777766631 23789999999999
Q ss_pred HHHhhhhCCCcccHHHHHHHHHH
Q psy1686 287 SVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 287 ~~~a~~~~~~~It~e~V~~~~~l 309 (448)
..+|..++...|+.+||++++..
T Consensus 376 ~~ia~~~~~~~I~ae~Ve~a~~~ 398 (647)
T COG1067 376 GDIAVSEGRKLITAEDVEEALQK 398 (647)
T ss_pred hHHHhcCCcccCcHHHHHHHHHh
Confidence 99988777889999999999975
No 199
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=96.69 E-value=0.014 Score=61.31 Aligned_cols=125 Identities=22% Similarity=0.266 Sum_probs=82.6
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEE--EecCceeEeeccccCC-----CCCCChhhhhhcc--cccCCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVIT--ATNRGVTKIRGTAYSS-----PHGIPIDLLDRMV--IIPTQPYQ 246 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~Il--aT~~~i~lI~~Ttenp-----~~~Ip~~lLSR~~--ii~~~pys 246 (448)
.+.||||||+.|+...|..|++.+++.....+=. ...-.+-+|.+|+.++ .....++|..|+. .|.+.|+.
T Consensus 234 ~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr 313 (445)
T TIGR02915 234 GGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLR 313 (445)
T ss_pred CCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCch
Confidence 4889999999999999999999999742100000 0000122333333221 1234566777763 67788887
Q ss_pred HH--HHHHHHHH---hc----------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHH
Q psy1686 247 DE--EIQAILKI---RL----------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDI 303 (448)
Q Consensus 247 ~~--eI~~IL~~---Ra----------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V 303 (448)
.. ||..+... +. ++++++..|..+.--|+.|..-|.+++|+..+. +..|+.+++
T Consensus 314 ~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~---~~~i~~~~l 382 (445)
T TIGR02915 314 SRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAE---GNQITAEDL 382 (445)
T ss_pred hchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC---CCcccHHHc
Confidence 53 55443331 10 899999999999888999999999999987652 346777665
No 200
>KOG0733|consensus
Probab=96.46 E-value=0.039 Score=60.83 Aligned_cols=107 Identities=25% Similarity=0.367 Sum_probs=62.1
Q ss_pred hhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCH-----------HHHHHHHHhhhhcCCC------
Q psy1686 143 LFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDI-----------ECFSFLNRALESEMSP------ 205 (448)
Q Consensus 143 ~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~-----------~~f~~Llk~lEe~~~p------ 205 (448)
+.+|..||=-+.||+..+++... -|.|+|||||+-..+ -...-|+..+.+.-.+
T Consensus 259 ivSGvSGESEkkiRelF~~A~~~---------aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 259 IVSGVSGESEKKIRELFDQAKSN---------APCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred hhcccCcccHHHHHHHHHHHhcc---------CCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCC
Confidence 56777777778999998887532 489999999999964 2234466666654332
Q ss_pred -eEEEEecCceeEeeccccCCCCCCChhhhhhcc----cccCCCCCHHHHHHHHHHhc----CCHHH-HHHHHHHc
Q psy1686 206 -VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV----IIPTQPYQDEEIQAILKIRL----MQTDG-LRVLTKIA 271 (448)
Q Consensus 206 -i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~----ii~~~pys~~eI~~IL~~Ra----i~dea-l~~La~~a 271 (448)
++|.|||+ |-.+-++| .|.. -|-+.--+...=.+||+.-| ++.+. +..||+..
T Consensus 330 VlVIgATnR------------PDslDpaL-RRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lT 392 (802)
T KOG0733|consen 330 VLVIGATNR------------PDSLDPAL-RRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLT 392 (802)
T ss_pred eEEEecCCC------------CcccCHHH-hccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcC
Confidence 44444544 55565554 3432 23333334444455666444 32221 34566664
No 201
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=96.45 E-value=0.022 Score=60.37 Aligned_cols=123 Identities=20% Similarity=0.280 Sum_probs=85.9
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCC-----eEEEEecCceeEeeccccCC-----CCCCChhhhhhc--ccccCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSP-----VVITATNRGVTKIRGTAYSS-----PHGIPIDLLDRM--VIIPTQ 243 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-----i~IlaT~~~i~lI~~Ttenp-----~~~Ip~~lLSR~--~ii~~~ 243 (448)
.|.||||||+.|+.+.|..|++.+++.... .-+ .-.+-+|.+|+.++ ......+|+.|+ ..|.+.
T Consensus 233 ~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~---~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~P 309 (469)
T PRK10923 233 GGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPV---KVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLP 309 (469)
T ss_pred CCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeE---EeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCC
Confidence 478999999999999999999999974310 000 01122333333221 123457888886 488888
Q ss_pred CCCH--HHHHHHHHH---h-c---------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHH
Q psy1686 244 PYQD--EEIQAILKI---R-L---------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIR 304 (448)
Q Consensus 244 pys~--~eI~~IL~~---R-a---------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~ 304 (448)
|+.+ +||..++.. + + ++++|+..|..+.--|+.|.--|.+++++..+ .+..|+.+++.
T Consensus 310 pLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~ 382 (469)
T PRK10923 310 PLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLP 382 (469)
T ss_pred CcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 8876 456544432 1 0 89999999999998999999999999998765 24468888774
No 202
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=96.44 E-value=0.023 Score=59.65 Aligned_cols=125 Identities=20% Similarity=0.242 Sum_probs=81.8
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEE---ecCceeEeeccccCC-----CCCCChhhhhhcc--cccCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITA---TNRGVTKIRGTAYSS-----PHGIPIDLLDRMV--IIPTQPY 245 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~Ila---T~~~i~lI~~Ttenp-----~~~Ip~~lLSR~~--ii~~~py 245 (448)
.++||||||+.|+...|..|++.+++.....+ -. -..++-+|.+|+.++ ......++..|+. .+.+.|+
T Consensus 238 ~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~-~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppL 316 (457)
T PRK11361 238 EGTLLLDEIGEMPLVLQAKLLRILQEREFERI-GGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPL 316 (457)
T ss_pred CCEEEEechhhCCHHHHHHHHHHHhcCcEEeC-CCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCCh
Confidence 48999999999999999999999987421000 00 001122333333221 1123456777753 5667777
Q ss_pred CH--HHHHHHHHH-------h----c--CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHH
Q psy1686 246 QD--EEIQAILKI-------R----L--MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIR 304 (448)
Q Consensus 246 s~--~eI~~IL~~-------R----a--i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~ 304 (448)
.. +||..+... + . ++++|++.|..+.--|+.|..-+.++.+...+ .+..|+.+++.
T Consensus 317 reR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~ 387 (457)
T PRK11361 317 RDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLP 387 (457)
T ss_pred hhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHCh
Confidence 74 455444321 1 0 89999999999988899999999999997654 23468877765
No 203
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=96.43 E-value=0.0046 Score=63.40 Aligned_cols=133 Identities=19% Similarity=0.314 Sum_probs=78.8
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCe----EEEEecCceeEeeccccCCCC-------------CCChhhhhhcc
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPV----VITATNRGVTKIRGTAYSSPH-------------GIPIDLLDRMV 238 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi----~IlaT~~~i~lI~~Ttenp~~-------------~Ip~~lLSR~~ 238 (448)
.||.+|||+..++.+..++|+.++|.-..++ ++..-+-.-.++++. ||.+ .+|++||||+=
T Consensus 122 ~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~--NP~~g~~~~~~~~~~ni~l~~~LLSRFD 199 (331)
T PF00493_consen 122 GGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAA--NPKFGRYDPNKSLSENINLPPPLLSRFD 199 (331)
T ss_dssp TSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE----TT--S-TTS-CGCCT-S-CCCHCC-S
T ss_pred CceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHH--hhhhhhcchhhhhHHhcccchhhHhhcC
Confidence 4999999999999999999999999743110 000001111233333 2333 58999999995
Q ss_pred -cccC-CCCCHH----------------------------------HHHHHHHH-h--c---CCHHHHHHHHHHcC----
Q psy1686 239 -IIPT-QPYQDE----------------------------------EIQAILKI-R--L---MQTDGLRVLTKIAL---- 272 (448)
Q Consensus 239 -ii~~-~pys~~----------------------------------eI~~IL~~-R--a---i~deal~~La~~a~---- 272 (448)
+|.+ .+.+.+ .+++.+.+ | . ++++|.++|.++=.
T Consensus 200 Lif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~ 279 (331)
T PF00493_consen 200 LIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRK 279 (331)
T ss_dssp EEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCH
T ss_pred EEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcc
Confidence 5443 333311 11222221 1 1 99999999988710
Q ss_pred ---------CCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 273 ---------DTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 273 ---------~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
.-++|.--.++..|-..|+-+-+..|+.+||+.+..+|
T Consensus 280 ~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~ 326 (331)
T PF00493_consen 280 ESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLF 326 (331)
T ss_dssp CHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHH
Confidence 11466667788877777776677899999999999876
No 204
>KOG0740|consensus
Probab=96.39 E-value=0.014 Score=61.94 Aligned_cols=89 Identities=25% Similarity=0.236 Sum_probs=48.8
Q ss_pred cCeEEEEeccCCCCH------------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccC
Q psy1686 175 VPGVLFIDEVHMLDI------------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPT 242 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~------------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~ 242 (448)
.|.|+||||||++-. -.-.||+...= .-.+.++.+.+||||+ =|+.+-.+++-|+.=+-+
T Consensus 245 qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~------~~s~~~drvlvigaTN--~P~e~Dea~~Rrf~kr~y 316 (428)
T KOG0740|consen 245 QPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDG------KNSAPDDRVLVIGATN--RPWELDEAARRRFVKRLY 316 (428)
T ss_pred CCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhcc------ccCCCCCeEEEEecCC--CchHHHHHHHHHhhceee
Confidence 589999999999821 11222222111 1122233344444443 288898899999873333
Q ss_pred CCCCHHHH-HHHHHH---hc---CCHHHHHHHHHHc
Q psy1686 243 QPYQDEEI-QAILKI---RL---MQTDGLRVLTKIA 271 (448)
Q Consensus 243 ~pys~~eI-~~IL~~---Ra---i~deal~~La~~a 271 (448)
-|+...+- ..+++. .. +.+..++.|++..
T Consensus 317 iplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~T 352 (428)
T KOG0740|consen 317 IPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVT 352 (428)
T ss_pred ecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 44444433 333331 22 6666777888875
No 205
>KOG0652|consensus
Probab=96.37 E-value=0.027 Score=56.60 Aligned_cols=134 Identities=26% Similarity=0.247 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCC-----------HHHHHHHHHhh---hhcCCC---eEEEEecCce
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLD-----------IECFSFLNRAL---ESEMSP---VVITATNRGV 215 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~-----------~~~f~~Llk~l---Ee~~~p---i~IlaT~~~i 215 (448)
+=+|+...-+. .+ .|.|+||||++..+ .+.|--.+..+ ..+.+. .+|-|||+
T Consensus 251 kLVRDAFaLAK------Ek---aP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNR-- 319 (424)
T KOG0652|consen 251 KLVRDAFALAK------EK---APTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNR-- 319 (424)
T ss_pred HHHHHHHHHhh------cc---CCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeeccc--
Confidence 45666555442 23 37999999998763 24444333333 322221 66667776
Q ss_pred eEeeccccCCCCCCChhhhhhc---ccccCCCCCHHHHHHHHHHhc----CCHHH-HHHHHHHcCCCCHHHHHHHHHHHH
Q psy1686 216 TKIRGTAYSSPHGIPIDLLDRM---VIIPTQPYQDEEIQAILKIRL----MQTDG-LRVLTKIALDTSLRYAIQLITTAS 287 (448)
Q Consensus 216 ~lI~~Ttenp~~~Ip~~lLSR~---~ii~~~pys~~eI~~IL~~Ra----i~dea-l~~La~~a~~Gd~R~AL~lLe~a~ 287 (448)
.--+-|+||..- .-|.|.--+.+.=..|+.+.. +++++ ++.|++...+-+.-..-..---|.
T Consensus 320 ----------vDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAG 389 (424)
T KOG0652|consen 320 ----------VDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAG 389 (424)
T ss_pred ----------ccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhh
Confidence 222334443211 135665555555556666544 55554 667777642112222111112345
Q ss_pred HHhhhhCCCcccHHHHHHHH
Q psy1686 288 VVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 288 ~~a~~~~~~~It~e~V~~~~ 307 (448)
.+|.+++...|+-+|.-+..
T Consensus 390 MiALRr~atev~heDfmegI 409 (424)
T KOG0652|consen 390 MIALRRGATEVTHEDFMEGI 409 (424)
T ss_pred HHHHhcccccccHHHHHHHH
Confidence 56666677788877765544
No 206
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=96.35 E-value=0.05 Score=55.45 Aligned_cols=119 Identities=13% Similarity=0.165 Sum_probs=81.2
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhh--hhhcccccCCCCCHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDL--LDRMVIIPTQPYQDEEIQAI 253 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~l--LSR~~ii~~~pys~~eI~~I 253 (448)
+.++++... ++...+.|...++.++...+++-+.+. .....++...+ .....++.+.+.+..++.+.
T Consensus 82 ~rlViv~~~---~~~~~~~L~~~l~~~~~~~~lil~~~~--------~~~~~kl~k~~~~~~~~~~v~~~~~~~~~l~~~ 150 (343)
T PRK06585 82 RRLIWVRAG---SKNLAAALKALLESPPGDAFIVIEAGD--------LKKGSSLRKLFETAAYAAAIPCYADDERDLARL 150 (343)
T ss_pred ceEEEEECC---chhHHHHHHHHHcCCCCCcEEEEEcCC--------CCcccHHHHHHhcCCCeeEEecCCCCHHHHHHH
Confidence 367888843 445556677777775444332222221 11111222222 12234677888999999999
Q ss_pred HHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 254 LKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 254 L~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+..++ ++++|+++|++.. +||++.+.|-|+....++ .+...||.++|+.+..
T Consensus 151 i~~~~~~~g~~i~~~a~~~L~~~~-g~dl~~l~~EleKL~ly~--~~~~~It~edV~~lv~ 208 (343)
T PRK06585 151 IDDELAEAGLRITPDARALLVALL-GGDRLASRNEIEKLALYA--HGKGEITLDDVRAVVG 208 (343)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHh-CCCHHHHHHHHHHHHHhc--CCCCCCCHHHHHHHhC
Confidence 88777 9999999999999 999999999999988775 2345799999998875
No 207
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.32 E-value=0.0055 Score=55.20 Aligned_cols=59 Identities=29% Similarity=0.412 Sum_probs=38.8
Q ss_pred ccCeEEEEeccCCCCHHHHHHHHHhhhhcC-----------CCeEEEEecCceeEeeccccCCCCCCChhhhhhcc
Q psy1686 174 IVPGVLFIDEVHMLDIECFSFLNRALESEM-----------SPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV 238 (448)
Q Consensus 174 i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~-----------~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ 238 (448)
+...|+++||++|.....|++|+.+++|.- .|.+|+||-.-+-. .+ -|.+|.++++|++
T Consensus 61 if~~ill~DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~-~G-----ty~Lpea~~DRF~ 130 (131)
T PF07726_consen 61 IFTNILLADEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQ-EG-----TYPLPEAQLDRFM 130 (131)
T ss_dssp T-SSEEEEETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT---S-----------HHHHTTSS
T ss_pred hhhceeeecccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCcccc-Cc-----eecCCHHHhcccc
Confidence 345899999999999999999999999873 35777777653322 12 3569999999985
No 208
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.26 E-value=0.02 Score=58.97 Aligned_cols=96 Identities=19% Similarity=0.225 Sum_probs=63.6
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhc-C------------CC-eEEEEecCceeEeeccc-cCCCCCCChhhhhhcc-c
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESE-M------------SP-VVITATNRGVTKIRGTA-YSSPHGIPIDLLDRMV-I 239 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~-~------------~p-i~IlaT~~~i~lI~~Tt-enp~~~Ip~~lLSR~~-i 239 (448)
+.+|++||+++..++.++.|++.+|.. . .| ..++||...+-.-+.+- +..-+.+|.++++|+. +
T Consensus 135 g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~ 214 (327)
T TIGR01650 135 NVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIV 214 (327)
T ss_pred CeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeE
Confidence 367999999999999999999999952 1 12 22334433211000000 1223457999999997 4
Q ss_pred ccCCCCCHHHHHHHHHHhc--C----CHHHHHHHHHHc
Q psy1686 240 IPTQPYQDEEIQAILKIRL--M----QTDGLRVLTKIA 271 (448)
Q Consensus 240 i~~~pys~~eI~~IL~~Ra--i----~deal~~La~~a 271 (448)
+.+..++.++-.+||..++ + +++.++++++++
T Consensus 215 ~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la 252 (327)
T TIGR01650 215 TTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVA 252 (327)
T ss_pred eeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHH
Confidence 6888889988889988554 4 355667776665
No 209
>KOG0742|consensus
Probab=96.12 E-value=0.065 Score=56.84 Aligned_cols=169 Identities=18% Similarity=0.220 Sum_probs=94.3
Q ss_pred cCccCCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCC-CCC--cccccCCCCCcch-hh-hhhhccCcccccc
Q psy1686 23 SHIRGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVM-VWP--CVMCGRGKNPQKV-KK-ISTATGREEEPDY 97 (448)
Q Consensus 23 sHi~glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~-gpf--~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~ 97 (448)
+-|+|- -.-.-+++..++++|=-..+.+-..-|-..-.+-|-. +|| ++|+|||.+|||. |+ +...+| -||
T Consensus 338 ~~i~~~-~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SG----lDY 412 (630)
T KOG0742|consen 338 HPIQGS-RSASSRGKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSG----LDY 412 (630)
T ss_pred chhhhh-HhhhhcCCCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcC----Cce
Confidence 345662 2223456766788887666544333333333333322 255 6789999669985 44 666677 344
Q ss_pred CCCccCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCe
Q psy1686 98 DGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPG 177 (448)
Q Consensus 98 d~~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~ 177 (448)
..|.| |+|.. --.+|+ ..|-+ . -+|-...+ ..-
T Consensus 413 A~mTG----------GDVAP-----------------lG~qaV------------TkiH~----l-FDWakkS~---rGL 445 (630)
T KOG0742|consen 413 AIMTG----------GDVAP-----------------LGAQAV------------TKIHK----L-FDWAKKSR---RGL 445 (630)
T ss_pred ehhcC----------CCccc-----------------cchHHH------------HHHHH----H-HHHHhhcc---cce
Confidence 44433 33211 000112 12222 2 23432222 246
Q ss_pred EEEEeccCCC---------CHHHHHHHH----HhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcc-cccCC
Q psy1686 178 VLFIDEVHML---------DIECFSFLN----RALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV-IIPTQ 243 (448)
Q Consensus 178 VLfIDEVH~L---------~~~~f~~Ll----k~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~-ii~~~ 243 (448)
+|||||.+-| +..+-++|| ++=+..---++++|||+ |--+-.++-+|.- ++.|.
T Consensus 446 llFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNr------------pgdlDsAV~DRide~veFp 513 (630)
T KOG0742|consen 446 LLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNR------------PGDLDSAVNDRIDEVVEFP 513 (630)
T ss_pred EEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCC------------ccchhHHHHhhhhheeecC
Confidence 8999999988 223333333 33333333477888888 6667778888885 88888
Q ss_pred CCCHHHHHHHHH
Q psy1686 244 PYQDEEIQAILK 255 (448)
Q Consensus 244 pys~~eI~~IL~ 255 (448)
--..+|=..+|.
T Consensus 514 LPGeEERfkll~ 525 (630)
T KOG0742|consen 514 LPGEEERFKLLN 525 (630)
T ss_pred CCChHHHHHHHH
Confidence 778888777776
No 210
>PRK05629 hypothetical protein; Validated
Probab=96.12 E-value=0.074 Score=53.91 Aligned_cols=119 Identities=13% Similarity=0.115 Sum_probs=89.0
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAIL 254 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL 254 (448)
+.+++++....+.+...+.|...+++++.. ++|+.+.+. +.+ -++.+.+...+.++.+.|+...++...+
T Consensus 65 ~rlV~v~~~~~~~~~~~~~l~~~l~~~~~~~~Lil~~~~~-------~~~--kk~~K~l~k~~~~ve~~~~~~~~l~~wi 135 (318)
T PRK05629 65 DRVIVLTNMEQAGKEPTDLALSAAVDPSPGIYLIIMHSGG-------GRT--KSMVPKLEKIAVVHEAAKLKPRERPGWV 135 (318)
T ss_pred ceEEEEeChHhcChhHHHHHHHHHhCCCCCeEEEEEcCCc-------chh--hHHHHHHHhcceEeeCCCCCHHHHHHHH
Confidence 478889988777777778888888887655 555555431 111 1122456666778899999999998888
Q ss_pred HHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 255 KIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 255 ~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
..++ ++++|+++|+... ++|++.+-+-|+....+. ++.||.++|+.+..
T Consensus 136 ~~~~~~~g~~i~~~A~~~L~~~~-g~dl~~l~~EleKL~~~~----~~~It~e~V~~~v~ 190 (318)
T PRK05629 136 TQEFKNHGVRPTPDVVHALLEGV-GSDLRELASAISQLVEDT----QGNVTVEKVRAYYV 190 (318)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHH-CccHHHHHHHHHHHHhcC----CCCcCHHHHHHHhC
Confidence 7766 9999999999998 889999999999764432 34699999998863
No 211
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=96.10 E-value=0.012 Score=63.25 Aligned_cols=210 Identities=22% Similarity=0.315 Sum_probs=114.6
Q ss_pred CCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcc-hhh-hhhhccCccccccCCCccCCCCcccc
Q psy1686 33 SLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQK-VKK-ISTATGREEEPDYDGWLADVTKDLRC 110 (448)
Q Consensus 33 ~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKt-t~~-I~~~~gk~~a~~~d~~~~~~~~fv~~ 110 (448)
..+|...+.|+|||..+....-=..+++.... -.+.+.|--.+||- .|+ |-.-|++ .+.+||.+
T Consensus 215 ~~~~~~~~~~iIG~S~am~~ll~~i~~VA~Sd---~tVLi~GETGtGKElvAraIH~~S~R-----------~~kPfV~~ 280 (550)
T COG3604 215 LSEVVLEVGGIIGRSPAMRQLLKEIEVVAKSD---STVLIRGETGTGKELVARAIHQLSPR-----------RDKPFVKL 280 (550)
T ss_pred ccchhcccccceecCHHHHHHHHHHHHHhcCC---CeEEEecCCCccHHHHHHHHHhhCcc-----------cCCCceee
Confidence 33455567899999999766333333333211 12445562112663 244 3222321 12467765
Q ss_pred CCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccc-cCeEEEEeccCCCCH
Q psy1686 111 PDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEI-VPGVLFIDEVHMLDI 189 (448)
Q Consensus 111 p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i-~~~VLfIDEVH~L~~ 189 (448)
.|.-+.- ||-| |.+|.-.+|.-|.-++.- .|+-|+ -.|-||+|||--|..
T Consensus 281 NCAAlPe--------sLlE-----------SELFGHeKGAFTGA~~~r----------~GrFElAdGGTLFLDEIGelPL 331 (550)
T COG3604 281 NCAALPE--------SLLE-----------SELFGHEKGAFTGAINTR----------RGRFELADGGTLFLDEIGELPL 331 (550)
T ss_pred eccccch--------HHHH-----------HHHhcccccccccchhcc----------CcceeecCCCeEechhhccCCH
Confidence 4443321 2222 234444444444433321 122221 137899999999999
Q ss_pred HHHHHHHHhhhhcCC-------C-----eEEEEecCceeEeeccccCCCCCCChhhhhhccccc--CCCCCH--HHHHHH
Q psy1686 190 ECFSFLNRALESEMS-------P-----VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIP--TQPYQD--EEIQAI 253 (448)
Q Consensus 190 ~~f~~Llk~lEe~~~-------p-----i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~--~~pys~--~eI~~I 253 (448)
+.|--|+|++|+-.. + -+|-|||++.-..-. + -+.-.||.=|.-+|. +.|+-+ +||--.
T Consensus 332 ~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V~---~--G~FRaDLYyRLsV~Pl~lPPLRER~~DIplL 406 (550)
T COG3604 332 ALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMVR---D--GEFRADLYYRLSVFPLELPPLRERPEDIPLL 406 (550)
T ss_pred HHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHHH---c--CcchhhhhhcccccccCCCCcccCCccHHHH
Confidence 999999999998752 1 566777765411100 0 011123333332221 233322 222111
Q ss_pred ----HH---H---hc---CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy1686 254 ----LK---I---RL---MQTDGLRVLTKIALDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 254 ----L~---~---Ra---i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a 290 (448)
++ . |+ ++.+|++.|.++.--|+.|.--|++++|+..|
T Consensus 407 A~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 407 AGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 11 1 11 99999999999988999999999999998876
No 212
>KOG0736|consensus
Probab=96.06 E-value=0.12 Score=58.28 Aligned_cols=98 Identities=20% Similarity=0.283 Sum_probs=60.3
Q ss_pred ccccccccccchhhhhhhHHHHHHHhc------------CCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCcc
Q psy1686 36 PRKVSQGMVGQLQARRAAGVVLGMIKE------------EVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLA 102 (448)
Q Consensus 36 p~~~~~~~VGQ~~~r~a~~~l~~mI~~------------~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~ 102 (448)
|+-.++++=|=+.+.. .|++-|+- .|-+| +.++|||.+|||- ||-. |.++.
T Consensus 667 PnV~WdDVGGLeevK~---eIldTIqlPL~hpeLfssglrkRSG--ILLYGPPGTGKTLlAKAV-------ATEcs---- 730 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKT---EILDTIQLPLKHPELFSSGLRKRSG--ILLYGPPGTGKTLLAKAV-------ATECS---- 730 (953)
T ss_pred CccchhcccCHHHHHH---HHHHHhcCcccChhhhhccccccce--eEEECCCCCchHHHHHHH-------Hhhce----
Confidence 5555788878777764 46776664 33568 8899999557763 5521 23333
Q ss_pred CCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEe
Q psy1686 103 DVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFID 182 (448)
Q Consensus 103 ~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfID 182 (448)
..|.+.-.=| +.-+.-|. =-..||+...+|. .+ .|.|+|.|
T Consensus 731 --L~FlSVKGPE-------------------------LLNMYVGq---SE~NVR~VFerAR-------~A--~PCVIFFD 771 (953)
T KOG0736|consen 731 --LNFLSVKGPE-------------------------LLNMYVGQ---SEENVREVFERAR-------SA--APCVIFFD 771 (953)
T ss_pred --eeEEeecCHH-------------------------HHHHHhcc---hHHHHHHHHHHhh-------cc--CCeEEEec
Confidence 3676631111 22233333 1267998887763 22 58999999
Q ss_pred ccCCCC
Q psy1686 183 EVHMLD 188 (448)
Q Consensus 183 EVH~L~ 188 (448)
|++.|-
T Consensus 772 ELDSlA 777 (953)
T KOG0736|consen 772 ELDSLA 777 (953)
T ss_pred cccccC
Confidence 999993
No 213
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.02 Score=58.82 Aligned_cols=132 Identities=17% Similarity=0.277 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCH--------------HHHHHHHHhhhhcCC----------C--e
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDI--------------ECFSFLNRALESEMS----------P--V 206 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~--------------~~f~~Llk~lEe~~~----------p--i 206 (448)
.++-+.+.+-.... ++.-..-.+||++||||+-..+ ..|.+|+|.+|.... | -
T Consensus 141 EDVENillkLlqaa-dydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe 219 (408)
T COG1219 141 EDVENILLKLLQAA-DYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQE 219 (408)
T ss_pred hhHHHHHHHHHHHc-ccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccc
Confidence 45655555443321 2222223479999999998843 569999999998641 2 3
Q ss_pred EEEEecCceeEee-c--------------------c-ccC--------------------CCCCCChhhhhhcc-cccCC
Q psy1686 207 VITATNRGVTKIR-G--------------------T-AYS--------------------SPHGIPIDLLDRMV-IIPTQ 243 (448)
Q Consensus 207 ~IlaT~~~i~lI~-~--------------------T-ten--------------------p~~~Ip~~lLSR~~-ii~~~ 243 (448)
||--.|.+|-+|. | . +.. --|++.|.|.-|.- +-.+.
T Consensus 220 ~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~ 299 (408)
T COG1219 220 FIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLE 299 (408)
T ss_pred eEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehh
Confidence 3333444443331 1 0 100 24778889999986 77899
Q ss_pred CCCHHHHHHHHHH--hc-----------------CCHHHHHHHHHHcC--CCCHHHHHHHHHH
Q psy1686 244 PYQDEEIQAILKI--RL-----------------MQTDGLRVLTKIAL--DTSLRYAIQLITT 285 (448)
Q Consensus 244 pys~~eI~~IL~~--Ra-----------------i~deal~~La~~a~--~Gd~R~AL~lLe~ 285 (448)
+++.+++.+||.. .| ++++||..||+.|. ...+|-.-+++|.
T Consensus 300 ~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~ 362 (408)
T COG1219 300 ELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEE 362 (408)
T ss_pred hcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 9999999999973 12 89999999998862 2345544444443
No 214
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=95.94 E-value=0.064 Score=60.18 Aligned_cols=133 Identities=23% Similarity=0.304 Sum_probs=85.5
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeE---EEEecCc-eeEeeccccCCCCC-------------CChhhhhhcc
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVV---ITATNRG-VTKIRGTAYSSPHG-------------IPIDLLDRMV 238 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~---IlaT~~~-i~lI~~Ttenp~~~-------------Ip~~lLSR~~ 238 (448)
+||.+|||+.-.+..-+++|..++|...-++- |.+|-.. -..+.| -||.|| +|++||||+=
T Consensus 384 ~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAA--aNP~~Gryd~~~~~~enI~l~~~lLSRFD 461 (682)
T COG1241 384 GGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAA--ANPKFGRYDPKKTVAENINLPAPLLSRFD 461 (682)
T ss_pred CCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhh--hCCCCCcCCCCCCHHHhcCCChhHHhhCC
Confidence 48999999999999999999999998653322 1122110 011111 356654 7999999994
Q ss_pred -cccCCCCC----HHHH---------------------------------HHHHHH-h--c---CCHHHHHHHHHHc--C
Q psy1686 239 -IIPTQPYQ----DEEI---------------------------------QAILKI-R--L---MQTDGLRVLTKIA--L 272 (448)
Q Consensus 239 -ii~~~pys----~~eI---------------------------------~~IL~~-R--a---i~deal~~La~~a--~ 272 (448)
+|-+.--. ++++ +..+.+ | . ++++|.+.|.++= .
T Consensus 462 Lifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~ 541 (682)
T COG1241 462 LIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEM 541 (682)
T ss_pred eeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHh
Confidence 33332211 1112 111111 1 1 8999999888771 0
Q ss_pred --C-----------CCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 273 --D-----------TSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 273 --~-----------Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
+ -.+|+.-.++..+-..|+.+-+..|+.+||.++..++
T Consensus 542 Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv 592 (682)
T COG1241 542 RKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLV 592 (682)
T ss_pred hhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHH
Confidence 1 1477777788877777766667789999999999875
No 215
>KOG0727|consensus
Probab=95.89 E-value=0.057 Score=54.16 Aligned_cols=137 Identities=20% Similarity=0.255 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCC-----------CHHHHHHHHHhhhhcCC------CeEEEEecCce
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHML-----------DIECFSFLNRALESEMS------PVVITATNRGV 215 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L-----------~~~~f~~Llk~lEe~~~------pi~IlaT~~~i 215 (448)
.=+|+...-+. .+ -|.|+|||||+.. +.+.|-.|+..+-.-.. -.+|||||+
T Consensus 235 rmvrdvfrlak------en---apsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnr-- 303 (408)
T KOG0727|consen 235 RMVRDVFRLAK------EN---APSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNR-- 303 (408)
T ss_pred HHHHHHHHHHh------cc---CCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCc--
Confidence 55776554432 22 3799999999876 34666666665543221 289999998
Q ss_pred eEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----CCHHH-H-HHHHHHcCCCCHHHHHHHHHHHHH
Q psy1686 216 TKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-----MQTDG-L-RVLTKIALDTSLRYAIQLITTASV 288 (448)
Q Consensus 216 ~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra-----i~dea-l-~~La~~a~~Gd~R~AL~lLe~a~~ 288 (448)
+-|-.|.. +-+.-|+|-.- |. |.+..-+..+-.-+ +++++ + +++++-- .-|.-+--.+..-|..
T Consensus 304 ----adtldpal-lrpgrldrkie--fp-lpdrrqkrlvf~titskm~ls~~vdle~~v~rpd-kis~adi~aicqeagm 374 (408)
T KOG0727|consen 304 ----ADTLDPAL-LRPGRLDRKIE--FP-LPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPD-KISGADINAICQEAGM 374 (408)
T ss_pred ----ccccCHhh-cCCcccccccc--CC-CCchhhhhhhHHhhhhcccCCcccCHHHHhcCcc-ccchhhHHHHHHHHhH
Confidence 33333333 33344566533 33 33322222111111 44432 2 3333321 1122222333444555
Q ss_pred HhhhhCCCcccHHHHHHHHHH
Q psy1686 289 VCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 289 ~a~~~~~~~It~e~V~~~~~l 309 (448)
.|-.+++-.|...|.+++|.-
T Consensus 375 ~avr~nryvvl~kd~e~ay~~ 395 (408)
T KOG0727|consen 375 LAVRENRYVVLQKDFEKAYKT 395 (408)
T ss_pred HHHHhcceeeeHHHHHHHHHh
Confidence 555455667888888888864
No 216
>KOG0737|consensus
Probab=95.87 E-value=0.02 Score=59.62 Aligned_cols=104 Identities=26% Similarity=0.318 Sum_probs=59.4
Q ss_pred cccCeEEEEeccCCCC--------------HHHHHHHHHhhhhcCC--CeEEEEecCceeEeeccccCCCCCCChhhhhh
Q psy1686 173 EIVPGVLFIDEVHMLD--------------IECFSFLNRALESEMS--PVVITATNRGVTKIRGTAYSSPHGIPIDLLDR 236 (448)
Q Consensus 173 ~i~~~VLfIDEVH~L~--------------~~~f~~Llk~lEe~~~--pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR 236 (448)
.+.|.|+|||||..+. +.+|=++---+-.... -.+..|||+ ||-+-.++++|
T Consensus 184 Kl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNR------------P~DlDeAiiRR 251 (386)
T KOG0737|consen 184 KLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNR------------PFDLDEAIIRR 251 (386)
T ss_pred hcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCC------------CccHHHHHHHh
Confidence 3579999999998873 1223322222221111 022234444 88899999999
Q ss_pred cc-cccCCCCCHHHHHHHHHHh---c-CCHHH-HHHHHHHcCCC-CHHHHHHHHHHHHHH
Q psy1686 237 MV-IIPTQPYQDEEIQAILKIR---L-MQTDG-LRVLTKIALDT-SLRYAIQLITTASVV 289 (448)
Q Consensus 237 ~~-ii~~~pys~~eI~~IL~~R---a-i~dea-l~~La~~a~~G-d~R~AL~lLe~a~~~ 289 (448)
+- .|...--+..+=++||+-- . ++++. +..+|+.. +| +.++-.++=..|+..
T Consensus 252 ~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t-~GySGSDLkelC~~Aa~~ 310 (386)
T KOG0737|consen 252 LPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMT-EGYSGSDLKELCRLAALR 310 (386)
T ss_pred CcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhc-CCCcHHHHHHHHHHHhHh
Confidence 74 4444333344445565521 1 55554 67788887 55 777777666555443
No 217
>KOG0745|consensus
Probab=95.80 E-value=0.096 Score=55.90 Aligned_cols=65 Identities=12% Similarity=0.309 Sum_probs=54.7
Q ss_pred CCCCChhhhhhcc-cccCCCCCHHHHHHHHHH--hc-----------------CCHHHHHHHHHHc--CCCCHHHHHHHH
Q psy1686 226 PHGIPIDLLDRMV-IIPTQPYQDEEIQAILKI--RL-----------------MQTDGLRVLTKIA--LDTSLRYAIQLI 283 (448)
Q Consensus 226 ~~~Ip~~lLSR~~-ii~~~pys~~eI~~IL~~--Ra-----------------i~deal~~La~~a--~~Gd~R~AL~lL 283 (448)
.|++.|.|.-|+- ++.|.+|+.+++..||.. .| ++++|++.||+.| .+..+|-.-.+|
T Consensus 422 sfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIl 501 (564)
T KOG0745|consen 422 SFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSIL 501 (564)
T ss_pred hhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHH
Confidence 5888899999996 889999999999999873 11 9999999999997 355888888899
Q ss_pred HHHHHHh
Q psy1686 284 TTASVVC 290 (448)
Q Consensus 284 e~a~~~a 290 (448)
|.+..-|
T Consensus 502 E~~Llea 508 (564)
T KOG0745|consen 502 ESLLLEA 508 (564)
T ss_pred HHHHhhh
Confidence 9887654
No 218
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.77 E-value=0.046 Score=50.89 Aligned_cols=97 Identities=20% Similarity=0.270 Sum_probs=56.8
Q ss_pred CeEEEEeccCCCC------HHHHHHHHHhhhhcCC--C-eEE-EEecCceeEeeccccCCCCCCChhhhhhcccccCCCC
Q psy1686 176 PGVLFIDEVHMLD------IECFSFLNRALESEMS--P-VVI-TATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPY 245 (448)
Q Consensus 176 ~~VLfIDEVH~L~------~~~f~~Llk~lEe~~~--p-i~I-laT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~py 245 (448)
+.|++|||+|++. ......|...++.... + .+| +++..+ .... ...-..++..|+..+.+.|+
T Consensus 119 ~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~------~~~~-~~~~~~~~~~~~~~~~l~~l 191 (234)
T PF01637_consen 119 KVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDS------LMEE-FLDDKSPLFGRFSHIELKPL 191 (234)
T ss_dssp CEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHH------HHHH-TT-TTSTTTT---EEEE---
T ss_pred cEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchH------HHHH-hhcccCccccccceEEEeeC
Confidence 3899999999998 4556677777776222 2 222 222211 0011 11223457788888999999
Q ss_pred CHHHHHHHHHHhc-----C--CHHHHHHHHHHcCCCCHHHHH
Q psy1686 246 QDEEIQAILKIRL-----M--QTDGLRVLTKIALDTSLRYAI 280 (448)
Q Consensus 246 s~~eI~~IL~~Ra-----i--~deal~~La~~a~~Gd~R~AL 280 (448)
+.++..+.++... + +++.++.+...+ +|.+++-.
T Consensus 192 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-gG~P~~l~ 232 (234)
T PF01637_consen 192 SKEEAREFLKELFKELIKLPFSDEDIEEIYSLT-GGNPRYLQ 232 (234)
T ss_dssp -HHHHHHHHHHHHHCC------HHHHHHHHHHH-TT-HHHHH
T ss_pred CHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHh-CCCHHHHh
Confidence 9999999998532 3 899999999998 99988753
No 219
>PRK07914 hypothetical protein; Reviewed
Probab=95.76 E-value=0.12 Score=52.49 Aligned_cols=119 Identities=11% Similarity=0.142 Sum_probs=86.6
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhh-cccccCCCC-CHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDR-MVIIPTQPY-QDEEIQA 252 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR-~~ii~~~py-s~~eI~~ 252 (448)
+.++++++..-+..+..+.|...+++++.. ++|+.+++.. . .-++-.++... +.++.+.|. +..++..
T Consensus 65 rRlV~v~~~~~~~~~~~~~l~~~l~~~~~~t~lil~~~~~~---~------~kk~~K~L~k~g~~~v~~~~~~~~~~l~~ 135 (320)
T PRK07914 65 ERVVVLEAAAEAGKDAAALILSAAADLPPGTVLVVVHSGGG---R------AKALANQLRKLGAEVHPCARITKAAERAD 135 (320)
T ss_pred ceEEEEeChHhccHHHHHHHHHHHhCCCCCeEEEEEecCCc---c------hhHHHHHHHHCCCEEEecCCCCCHHHHHH
Confidence 478888887666666778899999987663 6666655421 0 00122344433 358888988 9999988
Q ss_pred HHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 253 ILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 253 IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
.+..++ ++++|+++|+... ++|+...-+-|+....+ .++.||.++|+.+..
T Consensus 136 wi~~~a~~~g~~i~~~A~~~L~~~~-g~dl~~l~~EleKL~~~----~~~~It~e~V~~~v~ 192 (320)
T PRK07914 136 FVRKEFRSLRVKVDDDTVTALLDAV-GSDLRELASACSQLVAD----TGGAVDAAAVRRYHS 192 (320)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH-CccHHHHHHHHHHHhcC----CCCCcCHHHHHHHcC
Confidence 888777 9999999999998 89999999999865321 235799999998864
No 220
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.51 E-value=0.033 Score=47.08 Aligned_cols=66 Identities=30% Similarity=0.318 Sum_probs=41.0
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhc-ccccCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM-VIIPTQP 244 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~-~ii~~~p 244 (448)
+++++|||+|++.......+...+++..... ..+.++.+|.+++..+...++..+.+|| ..+.+.|
T Consensus 85 ~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 85 PGVLFIDEIDSLSRGAQNALLRVLETLNDLR---IDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred CeEEEEeChhhhhHHHHHHHHHHHHhcCcee---ccCCCeEEEEecCccccCCcChhHHhhhccEeecCC
Confidence 5899999999998888888888888753211 0112222332222222135778999999 5666543
No 221
>KOG0482|consensus
Probab=95.15 E-value=0.11 Score=56.34 Aligned_cols=134 Identities=16% Similarity=0.255 Sum_probs=89.1
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCC---eEEEEe-cCceeEeeccc-----cCCC------CCCChhhhhhcccc
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSP---VVITAT-NRGVTKIRGTA-----YSSP------HGIPIDLLDRMVII 240 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p---i~IlaT-~~~i~lI~~Tt-----enp~------~~Ip~~lLSR~~ii 240 (448)
.||-+|||++-.+..--.++...+|...-. .=|+.| |.....++|.+ +||- -.+|.+||||+-++
T Consensus 440 ~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll 519 (721)
T KOG0482|consen 440 GGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLL 519 (721)
T ss_pred CceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhh
Confidence 389999999999888888888888864311 111111 00011222221 2221 24799999998432
Q ss_pred -------------------------------cCCCCCHHHHHHHHHHhc------CCHHHHHHHHHH-------------
Q psy1686 241 -------------------------------PTQPYQDEEIQAILKIRL------MQTDGLRVLTKI------------- 270 (448)
Q Consensus 241 -------------------------------~~~pys~~eI~~IL~~Ra------i~deal~~La~~------------- 270 (448)
.|+|++.+-|+..+. -| ++++.-++|+..
T Consensus 520 ~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~-~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~ 598 (721)
T KOG0482|consen 520 WLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYIS-LAKRKNPVVPEALADYITGAYVELRREARSSKD 598 (721)
T ss_pred hhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHH-HHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCC
Confidence 566777777777766 22 777777777665
Q ss_pred cCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 271 ALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 271 a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
.+-.++|..|.+|..+...|.-+=+..|+.+||.+++.+.
T Consensus 599 ~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLm 638 (721)
T KOG0482|consen 599 FTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLM 638 (721)
T ss_pred CcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 1245899999999998877765566789999999988763
No 222
>KOG1051|consensus
Probab=94.87 E-value=0.11 Score=59.90 Aligned_cols=79 Identities=18% Similarity=0.324 Sum_probs=58.8
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCC------------CeEEEEecCceeEeecc----------------------
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMS------------PVVITATNRGVTKIRGT---------------------- 221 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~------------pi~IlaT~~~i~lI~~T---------------------- 221 (448)
+.|+++|||.--+...|+.|+.++++.-. -+|||..|.+...|...
T Consensus 661 ~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~ 740 (898)
T KOG1051|consen 661 YSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKV 740 (898)
T ss_pred ceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecccchHhhhcccccccccccchhhhhhhhhhhh
Confidence 48999999999999999999999999852 17777777654211111
Q ss_pred -------ccCCCCCCChhhhhhcc-cccCCCCCHHHHHHHHH
Q psy1686 222 -------AYSSPHGIPIDLLDRMV-IIPTQPYQDEEIQAILK 255 (448)
Q Consensus 222 -------tenp~~~Ip~~lLSR~~-ii~~~pys~~eI~~IL~ 255 (448)
-+|+ +...+.++.|+- +.-|.|++.+++.+|..
T Consensus 741 ~v~~~~~~~~~-~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~ 781 (898)
T KOG1051|consen 741 QVSDAVRIYNK-QFFRKEFLNRIDELDLNLPLDRDELIEIVN 781 (898)
T ss_pred hhhhhhhcccc-cccChHHhcccceeeeecccchhhHhhhhh
Confidence 0111 556788898875 88899999999888876
No 223
>PRK04132 replication factor C small subunit; Provisional
Probab=94.83 E-value=0.014 Score=66.96 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=43.0
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV 82 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt 82 (448)
-|+++.+||++ |+++|||+++.+ .|.+++++|+++| ..++|||..||+.
T Consensus 7 ~~~~~k~RP~~-f~dIiGqe~i~~---~Lk~~i~~~~i~h--~l~~g~~g~~~cl 55 (846)
T PRK04132 7 KPWVEKYRPQR-LDDIVGQEHIVK---RLKHYVKTGSMPH--LLFAGPPGVGKCL 55 (846)
T ss_pred ccHHHhhCCCC-HHHhcCcHHHHH---HHHHHHHcCCCCe--EEEECCCCCCccc
Confidence 37789999999 899999999975 6999999999999 7799999558864
No 224
>KOG0651|consensus
Probab=94.64 E-value=0.08 Score=54.39 Aligned_cols=37 Identities=27% Similarity=0.530 Sum_probs=24.3
Q ss_pred hhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCC
Q psy1686 142 ALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHML 187 (448)
Q Consensus 142 a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L 187 (448)
++.++.-+|-..=||+--+.+ .+.+|.++|+||||-.
T Consensus 201 ~lv~kyiGEsaRlIRemf~yA---------~~~~pciifmdeiDAi 237 (388)
T KOG0651|consen 201 ALVDKYIGESARLIRDMFRYA---------REVIPCIIFMDEIDAI 237 (388)
T ss_pred hhhhhhcccHHHHHHHHHHHH---------hhhCceEEeehhhhhh
Confidence 345555566656666655443 2346899999999976
No 225
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=94.56 E-value=0.15 Score=55.66 Aligned_cols=122 Identities=26% Similarity=0.380 Sum_probs=75.3
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCC-------C-----eEEEEecCceeEeeccccCCCCCCChhhhhhccc--cc
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMS-------P-----VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVI--IP 241 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~-------p-----i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~i--i~ 241 (448)
.|-||+|||.-+....|.-|+|++||-.- | -+|-|||+.....-+. -..-.||-=|.-| +.
T Consensus 341 gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~i~~-----G~FReDLYYRLNV~~i~ 415 (560)
T COG3829 341 GGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKMIAE-----GTFREDLYYRLNVIPIT 415 (560)
T ss_pred CCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHHHHhc-----Ccchhhheeeeceeeec
Confidence 37899999999999999999999998641 1 4455555543111000 0001233333321 22
Q ss_pred CCCCCH--HHHHHH----HHH---hc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHH
Q psy1686 242 TQPYQD--EEIQAI----LKI---RL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIR 304 (448)
Q Consensus 242 ~~pys~--~eI~~I----L~~---Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~ 304 (448)
+.|+-+ +||.-+ |+. +- ++++|+..|.++.-=|+.|.-=|++|++..+.. ....|+.++.-
T Consensus 416 iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v~~~~--~~~~I~~~~lp 491 (560)
T COG3829 416 IPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIERAVNLVE--SDGLIDADDLP 491 (560)
T ss_pred CCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHHHHHhccC--Ccceeehhhcc
Confidence 333332 344322 221 11 999999999999888999999999999987653 23346655543
No 226
>PRK12377 putative replication protein; Provisional
Probab=94.48 E-value=0.2 Score=49.71 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=25.2
Q ss_pred CeEEEEecc--CCCCHHHHHHHHHhhhhcC---CCeEE
Q psy1686 176 PGVLFIDEV--HMLDIECFSFLNRALESEM---SPVVI 208 (448)
Q Consensus 176 ~~VLfIDEV--H~L~~~~f~~Llk~lEe~~---~pi~I 208 (448)
..+|+|||+ +.++...++.|+..++..- .|++|
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptii 201 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGM 201 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEE
Confidence 489999999 6667788888888888754 35554
No 227
>PHA02244 ATPase-like protein
Probab=94.28 E-value=0.12 Score=54.19 Aligned_cols=70 Identities=26% Similarity=0.267 Sum_probs=47.6
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCC----------C--eEEEEecCceeEeeccc-cCCCCCCChhhhhhcccccC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMS----------P--VVITATNRGVTKIRGTA-YSSPHGIPIDLLDRMVIIPT 242 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~----------p--i~IlaT~~~i~lI~~Tt-enp~~~Ip~~lLSR~~ii~~ 242 (448)
.++|||||++.+.++.+..|++++++.+. | .+|.++|... -++.. ..+...++.+++|||.++.|
T Consensus 181 GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~--~G~~~~y~G~k~L~~AllDRFv~I~~ 258 (383)
T PHA02244 181 GGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLG--KGADHIYVARNKIDGATLDRFAPIEF 258 (383)
T ss_pred CCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCc--cCcccccCCCcccCHHHHhhcEEeeC
Confidence 38999999999999999999999986431 1 3333333200 00000 11346789999999999998
Q ss_pred CCCCH
Q psy1686 243 QPYQD 247 (448)
Q Consensus 243 ~pys~ 247 (448)
...+.
T Consensus 259 dyp~~ 263 (383)
T PHA02244 259 DYDEK 263 (383)
T ss_pred CCCcH
Confidence 77663
No 228
>PF13173 AAA_14: AAA domain
Probab=94.23 E-value=0.053 Score=47.45 Aligned_cols=65 Identities=20% Similarity=0.285 Sum_probs=44.9
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCC-CeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMS-PVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEI 250 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~-pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI 250 (448)
++++||||||++. +.+.++....+..+. .+++.+++. ..........+-.|+..+++.|++..|.
T Consensus 62 ~~~i~iDEiq~~~-~~~~~lk~l~d~~~~~~ii~tgS~~---------~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLP-DWEDALKFLVDNGPNIKIILTGSSS---------SLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhc-cHHHHHHHHHHhccCceEEEEccch---------HHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 4889999999994 678888888886532 233322221 1112345567888999999999999885
No 229
>PHA00729 NTP-binding motif containing protein
Probab=94.18 E-value=0.044 Score=53.74 Aligned_cols=36 Identities=11% Similarity=-0.049 Sum_probs=32.1
Q ss_pred CCCCChhhhhhcccccCCCCCHHHHHHHHHHhcCCH
Q psy1686 226 PHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLMQT 261 (448)
Q Consensus 226 ~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Rai~d 261 (448)
+|.++++++|||.+|.|.+++.+++.+.|+.|.+..
T Consensus 108 yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg~~~ 143 (226)
T PHA00729 108 FYKIYALIRTRVSAVIFTTPSPEDLAFYLREKGWYQ 143 (226)
T ss_pred HHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCCCcH
Confidence 678999999999999999999999999999877433
No 230
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.82 E-value=0.09 Score=46.11 Aligned_cols=62 Identities=24% Similarity=0.259 Sum_probs=37.8
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCC-----eEEEEecC-----ceeEeeccccC--CCCCCChhhhhhc
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSP-----VVITATNR-----GVTKIRGTAYS--SPHGIPIDLLDRM 237 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-----i~IlaT~~-----~i~lI~~Tten--p~~~Ip~~lLSR~ 237 (448)
+.++||||+|+.+.+.++.|+.++|+...- ..+-..+. +..+|++++.. .-..++++|+|||
T Consensus 66 ~~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 66 GGILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp EEEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred eeEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 589999999999999999999999975311 11100110 24444444321 2347999999997
No 231
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=0.53 Score=49.11 Aligned_cols=132 Identities=14% Similarity=0.169 Sum_probs=84.7
Q ss_pred CeEEEEeccCCCCH------------HHHHHHHHhhhhcCCC-eEEEEecCceeEeecc--c-cCCCCCCChhhhhhcc-
Q psy1686 176 PGVLFIDEVHMLDI------------ECFSFLNRALESEMSP-VVITATNRGVTKIRGT--A-YSSPHGIPIDLLDRMV- 238 (448)
Q Consensus 176 ~~VLfIDEVH~L~~------------~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~T--t-enp~~~Ip~~lLSR~~- 238 (448)
.||+|||||+-.-. ..|--|++.+|...-. ..=...++.|-+|++- - -.|+- +.|.|.-|+-
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSD-LiPELQGRfPI 329 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSD-LIPELQGRFPI 329 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhh-cChhhcCCCce
Confidence 48999999987621 2244455555543210 0000012334455443 2 34444 5588999985
Q ss_pred cccCCCCCHHHHHHHHHH---------hc----------CCHHHHHHHHHHc-------CCCCHHHHHHHHHHHHH-H--
Q psy1686 239 IIPTQPYQDEEIQAILKI---------RL----------MQTDGLRVLTKIA-------LDTSLRYAIQLITTASV-V-- 289 (448)
Q Consensus 239 ii~~~pys~~eI~~IL~~---------Ra----------i~deal~~La~~a-------~~Gd~R~AL~lLe~a~~-~-- 289 (448)
-+.+++||.+|+..||.. .| ++++|++.||++| .+=.+|..-..||.... +
T Consensus 330 RVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLediSF 409 (444)
T COG1220 330 RVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLEDISF 409 (444)
T ss_pred EEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhCc
Confidence 799999999999999863 11 9999999999996 23478999988887753 1
Q ss_pred -hhhhCC--CcccHHHHHHHHH
Q psy1686 290 -CRRRKA--TEICMEDIRKVYA 308 (448)
Q Consensus 290 -a~~~~~--~~It~e~V~~~~~ 308 (448)
|...++ -.|+.+.|++-++
T Consensus 410 eA~d~~g~~v~Id~~yV~~~l~ 431 (444)
T COG1220 410 EAPDMSGQKVTIDAEYVEEKLG 431 (444)
T ss_pred cCCcCCCCeEEEcHHHHHHHHH
Confidence 211222 2588888877665
No 232
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=93.75 E-value=0.61 Score=47.60 Aligned_cols=118 Identities=16% Similarity=0.184 Sum_probs=80.9
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhh---cccccCCCCCHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDR---MVIIPTQPYQDEEIQA 252 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR---~~ii~~~pys~~eI~~ 252 (448)
+.++++.+..-+.......|...++.++..++|+...+.. +.+ -++ ..++.. ..++.+.+.+..++..
T Consensus 72 ~rlViv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~~------~k~--kkl-~k~~~~~k~~~~v~~~~~~~~~l~~ 142 (328)
T PRK08487 72 KNLLIIKLDKKIPKKELKLLIELCEKNSDNYFIIELYGAD------SKT--KDI-EKLFQKKDEAVFVRFFKPNAREALE 142 (328)
T ss_pred ceEEEEecccccCHHHHHHHHHHHhcCCCCEEEEEecCCc------chh--HHH-HHHhccCCCceEEEeeCCCHHHHHH
Confidence 4678887665555666788888888765333332211110 000 000 011111 3467778899999988
Q ss_pred HHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 253 ILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 253 IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
.+..++ ++++|+++|+... ++|+..+-+-|+-...++ ..||.++|+.+..
T Consensus 143 ~i~~~~~~~g~~i~~~a~~~L~~~~-g~dl~~l~~ELeKL~ly~-----~~It~edV~~~v~ 198 (328)
T PRK08487 143 LLQERAKELGLDIDQNALNHLYFIH-NEDLALAANELEKLAILN-----EPITLKDIQELVF 198 (328)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHh-CcHHHHHHHHHHHHHHhc-----CCCCHHHHHHHhc
Confidence 888766 9999999999998 899999999999887763 2699999999874
No 233
>KOG0726|consensus
Probab=93.63 E-value=0.27 Score=50.40 Aligned_cols=39 Identities=36% Similarity=0.439 Sum_probs=26.0
Q ss_pred cCeEEEEeccCCCCH-----------HHHHHHHHhhh---hcCC---CeEEEEecC
Q psy1686 175 VPGVLFIDEVHMLDI-----------ECFSFLNRALE---SEMS---PVVITATNR 213 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~-----------~~f~~Llk~lE---e~~~---pi~IlaT~~ 213 (448)
-|.|+|||||+.... +.|--++..+. .+.+ -.+|||||+
T Consensus 278 apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnr 333 (440)
T KOG0726|consen 278 APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNR 333 (440)
T ss_pred CCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccc
Confidence 379999999998742 44544444433 2222 289999997
No 234
>KOG0738|consensus
Probab=93.53 E-value=0.25 Score=52.23 Aligned_cols=45 Identities=27% Similarity=0.313 Sum_probs=25.1
Q ss_pred CCCCChhhhhhcccccCCCCCHHHHH-HHHHHhc-----CCHH-HHHHHHHHc
Q psy1686 226 PHGIPIDLLDRMVIIPTQPYQDEEIQ-AILKIRL-----MQTD-GLRVLTKIA 271 (448)
Q Consensus 226 ~~~Ip~~lLSR~~ii~~~pys~~eI~-~IL~~Ra-----i~de-al~~La~~a 271 (448)
|..|-.+|+.|+--=-+-||...+-+ ..|+ +. .+++ -++.|++.+
T Consensus 362 PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~-~~l~~~~~~~~~~~~~lae~~ 413 (491)
T KOG0738|consen 362 PWDIDEALRRRLEKRIYIPLPDAEARSALIK-ILLRSVELDDPVNLEDLAERS 413 (491)
T ss_pred CcchHHHHHHHHhhheeeeCCCHHHHHHHHH-HhhccccCCCCccHHHHHHHh
Confidence 67798999999851112455544433 3333 32 3333 366777775
No 235
>PRK05907 hypothetical protein; Provisional
Probab=93.11 E-value=0.94 Score=46.38 Aligned_cols=120 Identities=13% Similarity=0.058 Sum_probs=83.1
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccc----cCCCCCHHHHH
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVII----PTQPYQDEEIQ 251 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii----~~~pys~~eI~ 251 (448)
.++.+....-++....+.|.+.+++|+.. ++|+.... .+. .-++-..+ .....+ .+.++...++.
T Consensus 71 RlV~v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~~-------~d~--~kkl~K~i-~k~~~v~~~~e~~~l~e~~L~ 140 (311)
T PRK05907 71 ETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTTK-------QEC--FSSLSKKL-SSALCLSLFGEWFADRDKRIA 140 (311)
T ss_pred EEEEEecccccccccHHHHHHHHhCCCCCeEEEEEEec-------ccH--HHHHHHHH-hhcceeccccccCCCCHHHHH
Confidence 55555554455555678899999998775 44422111 111 00111222 235555 79999999998
Q ss_pred HHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 252 AILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 252 ~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+-+..++ ++++|+++++....+||+..+.+-|+-...++ ..+..||.++|+.+..
T Consensus 141 ~Wi~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~--g~~~~It~e~V~~lv~ 201 (311)
T PRK05907 141 QLLIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQM--GKKESLEASDIQSFVV 201 (311)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhc--CCCCeECHHHHHHHhc
Confidence 8888777 99999999999874589999999999887775 2456799999999864
No 236
>KOG0728|consensus
Probab=93.06 E-value=1 Score=45.35 Aligned_cols=122 Identities=27% Similarity=0.308 Sum_probs=73.3
Q ss_pred CeEEEEeccCCC-----------CHHHHHHHHHhh---hhcCCC---eEEEEecCceeEeeccccCCCCCCChhhh----
Q psy1686 176 PGVLFIDEVHML-----------DIECFSFLNRAL---ESEMSP---VVITATNRGVTKIRGTAYSSPHGIPIDLL---- 234 (448)
Q Consensus 176 ~~VLfIDEVH~L-----------~~~~f~~Llk~l---Ee~~~p---i~IlaT~~~i~lI~~Ttenp~~~Ip~~lL---- 234 (448)
|.|+|.|||+.. +.+.|--.+..+ +.+... .+|||||+- --+-++||
T Consensus 241 psiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnri------------dild~allrpgr 308 (404)
T KOG0728|consen 241 PSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRI------------DILDPALLRPGR 308 (404)
T ss_pred CceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccc------------ccccHhhcCCCc
Confidence 799999999988 345555444433 333332 889999982 11223333
Q ss_pred -hhcccccCCCCCHHHHHHHHHHhc----CCHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 235 -DRMVIIPTQPYQDEEIQAILKIRL----MQTD-GLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 235 -SR~~ii~~~pys~~eI~~IL~~Ra----i~de-al~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+| -|.|.|-+.+.=.+||++.. +... -+.-||+--.+.+.-..-..-.-|..+|..+-+..||.||.+-+..
T Consensus 309 idr--kiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~ 386 (404)
T KOG0728|consen 309 IDR--KIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVA 386 (404)
T ss_pred ccc--cccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHH
Confidence 33 37889999888888888533 1111 1344555421223323333344567777666667899999988877
Q ss_pred Hhc
Q psy1686 309 LFL 311 (448)
Q Consensus 309 lf~ 311 (448)
..+
T Consensus 387 kvm 389 (404)
T KOG0728|consen 387 KVM 389 (404)
T ss_pred HHH
Confidence 544
No 237
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=92.99 E-value=0.3 Score=44.17 Aligned_cols=102 Identities=13% Similarity=0.155 Sum_probs=65.4
Q ss_pred CeEEEEecc----CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHH
Q psy1686 176 PGVLFIDEV----HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEI 250 (448)
Q Consensus 176 ~~VLfIDEV----H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI 250 (448)
+.|++|... .-+..+....|...++.++.. ++|+..++. .+.. .++...+-..+.++.+.+++..++
T Consensus 58 ~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~------~~~~--~k~~k~l~~~~~~~~~~~~~~~~~ 129 (172)
T PF06144_consen 58 KKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEK------LDKR--KKLYKALKKQAIVIECKKPKEQEL 129 (172)
T ss_dssp EEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--------HH--HHHHHHHTTTEEEEEE----TTTH
T ss_pred CeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCc------hhhh--hhHHHHHhcccceEEecCCCHHHH
Confidence 378999998 446678899999999987766 333333321 1110 113355666777899999999999
Q ss_pred HHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy1686 251 QAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTA 286 (448)
Q Consensus 251 ~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a 286 (448)
...++.++ ++++|+++|+... ++|++...+-|+..
T Consensus 130 ~~~i~~~~~~~g~~i~~~a~~~L~~~~-~~d~~~l~~EleKL 170 (172)
T PF06144_consen 130 PRWIKERAKKNGLKIDPDAAQYLIERV-GNDLSLLQNELEKL 170 (172)
T ss_dssp HHHHHHHHHHTT-EE-HHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHh-ChHHHHHHHHHHHh
Confidence 99998777 9999999999998 99999988887754
No 238
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=92.92 E-value=1.7 Score=44.60 Aligned_cols=121 Identities=14% Similarity=0.210 Sum_probs=81.6
Q ss_pred eEEEEeccCCC-CHHHHHHHHHhhhhcC-CCeEEEEecCceeEeeccccCCCCCCCh--hhhhhcccccCCCCCHHHHHH
Q psy1686 177 GVLFIDEVHML-DIECFSFLNRALESEM-SPVVITATNRGVTKIRGTAYSSPHGIPI--DLLDRMVIIPTQPYQDEEIQA 252 (448)
Q Consensus 177 ~VLfIDEVH~L-~~~~f~~Llk~lEe~~-~pi~IlaT~~~i~lI~~Ttenp~~~Ip~--~lLSR~~ii~~~pys~~eI~~ 252 (448)
.+++|.-..-. +++..-.+......+| ..++++........ ..+.-. .-+..+.++...|.+.+++.+
T Consensus 76 ~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~--------~~~~~k~~~~~~~~~~~~~~~~~~~~l~~ 147 (334)
T COG1466 76 RLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDK--------AKKLTKWLKKLAKAVVVECKPLDEAELPQ 147 (334)
T ss_pred eeEEEECCCCCcCchhHHHHHHHHcCCCCCCEEEEEecCCcch--------HHHHHHHHHHhccCceEecCCCCHHHHHH
Confidence 35555555554 3555555555555555 34444444432110 011111 112224478889999999999
Q ss_pred HHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 253 ILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 253 IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
.+..|+ ++++|+++|+..- +||.+.+-+-++....++ .++ .||.++|+.+...
T Consensus 148 ~i~~~~~~~~l~i~~~a~~~L~~~~-~~nl~~i~~Ei~KL~l~~--~~~-~I~~~~V~~~v~~ 206 (334)
T COG1466 148 WIKKRAKELGLKIDQEAIQLLLEAL-GGNLLAIAQEIEKLALYA--GDK-EITLEDVEEVVSD 206 (334)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHh-CCcHHHHHHHHHHHHHhC--CCC-cCCHHHHHHHHhc
Confidence 998887 9999999999998 899999999999988776 344 8999999998863
No 239
>KOG0733|consensus
Probab=92.39 E-value=1.3 Score=49.29 Aligned_cols=95 Identities=29% Similarity=0.362 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCH-----------HHHHHHHHhhhh---cCCCeEEEEecCceeEe
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDI-----------ECFSFLNRALES---EMSPVVITATNRGVTKI 218 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~-----------~~f~~Llk~lEe---~~~pi~IlaT~~~i~lI 218 (448)
.-||....++.+ . .|.|+|.||++.|-+ -..|-|+--+.. .-.-.+|-|||+
T Consensus 591 rAVR~vFqRAR~------s---aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNR----- 656 (802)
T KOG0733|consen 591 RAVRQVFQRARA------S---APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNR----- 656 (802)
T ss_pred HHHHHHHHHhhc------C---CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCC-----
Confidence 456766655522 1 489999999999932 234444443332 112244555555
Q ss_pred eccccCCCCCCChhhh-----hhcccccCCCCCHHHHHHHHHHhc------CCHHH-HHHHHHH
Q psy1686 219 RGTAYSSPHGIPIDLL-----DRMVIIPTQPYQDEEIQAILKIRL------MQTDG-LRVLTKI 270 (448)
Q Consensus 219 ~~Ttenp~~~Ip~~lL-----SR~~ii~~~pys~~eI~~IL~~Ra------i~dea-l~~La~~ 270 (448)
|-.|-+++| ++.+-+ ..-+.+|=.+||+.-. +++++ |+.|++.
T Consensus 657 -------PDiIDpAiLRPGRlDk~LyV--~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~ 711 (802)
T KOG0733|consen 657 -------PDIIDPAILRPGRLDKLLYV--GLPNAEERVAILKTITKNTKPPLSSDVDLDEIARN 711 (802)
T ss_pred -------CcccchhhcCCCccCceeee--cCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc
Confidence 555666665 344333 3344455556665321 44443 6666665
No 240
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=91.53 E-value=0.71 Score=49.77 Aligned_cols=80 Identities=19% Similarity=0.219 Sum_probs=53.5
Q ss_pred CeEEEEeccCCCCHHH-HHHHHHhhhhcC------CCeEE-------EEecCceeEeeccc--cCCCCCCChhhhhhccc
Q psy1686 176 PGVLFIDEVHMLDIEC-FSFLNRALESEM------SPVVI-------TATNRGVTKIRGTA--YSSPHGIPIDLLDRMVI 239 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~-f~~Llk~lEe~~------~pi~I-------laT~~~i~lI~~Tt--enp~~~Ip~~lLSR~~i 239 (448)
+.||||||+.|-+.+. |.-|.-.+|... .|... +.-..++.+|++++ ..+.+.+-.+|+.|+..
T Consensus 273 ~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~f 352 (459)
T PRK11331 273 KYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSF 352 (459)
T ss_pred CcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhhe
Confidence 5899999999999764 888887787431 11110 11223445555553 34556688999999999
Q ss_pred ccCCC-CCHHHHHHHHH
Q psy1686 240 IPTQP-YQDEEIQAILK 255 (448)
Q Consensus 240 i~~~p-ys~~eI~~IL~ 255 (448)
+.++| |+..++++.+.
T Consensus 353 i~i~p~~~~~~~~~~l~ 369 (459)
T PRK11331 353 IDIEPGFDTPQFRNFLL 369 (459)
T ss_pred EEecCCCChHHHHHHHH
Confidence 88888 77666666654
No 241
>KOG0730|consensus
Probab=91.28 E-value=1.8 Score=48.46 Aligned_cols=133 Identities=23% Similarity=0.285 Sum_probs=73.8
Q ss_pred CCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCH----------HHHHHHHHhhhhcC--CCeEE-EEecCce
Q psy1686 149 GEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDI----------ECFSFLNRALESEM--SPVVI-TATNRGV 215 (448)
Q Consensus 149 ~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~----------~~f~~Llk~lEe~~--~pi~I-laT~~~i 215 (448)
+|=.+.+|+...++... . .|.++||||++-+-+ ..-..|++.++.-. ..+++ .+||+
T Consensus 260 gEte~~LR~~f~~a~k~-----~---~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnr-- 329 (693)
T KOG0730|consen 260 GETESNLRKAFAEALKF-----Q---VPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNR-- 329 (693)
T ss_pred cchHHHHHHHHHHHhcc-----C---CCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCC--
Confidence 33348899988876422 1 289999999999953 33445566665543 23443 44444
Q ss_pred eEeeccccCCCCCCChhhhh-hcc-cccCCCCCH---HHHHHHHHHhc--CCHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Q psy1686 216 TKIRGTAYSSPHGIPIDLLD-RMV-IIPTQPYQD---EEIQAILKIRL--MQTDGLRVLTKIALDT-SLRYAIQLITTAS 287 (448)
Q Consensus 216 ~lI~~Ttenp~~~Ip~~lLS-R~~-ii~~~pys~---~eI~~IL~~Ra--i~deal~~La~~a~~G-d~R~AL~lLe~a~ 287 (448)
|.+|.+++.. |+- -+..---+. -||.+++-.+. .++..+..++..+ .| -..+.-.++..|.
T Consensus 330 ----------p~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~t-hGyvGaDL~~l~~ea~ 398 (693)
T KOG0730|consen 330 ----------PDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVST-HGYVGADLAALCREAS 398 (693)
T ss_pred ----------ccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHc-cchhHHHHHHHHHHHH
Confidence 7778888773 542 122222222 23434333222 4456688888887 44 5555556666555
Q ss_pred HHhhhhCCCcccHHHHHHHH
Q psy1686 288 VVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 288 ~~a~~~~~~~It~e~V~~~~ 307 (448)
.-+..+ +.++++.+.
T Consensus 399 ~~~~r~-----~~~~~~~A~ 413 (693)
T KOG0730|consen 399 LQATRR-----TLEIFQEAL 413 (693)
T ss_pred HHHhhh-----hHHHHHHHH
Confidence 433221 455555554
No 242
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=91.17 E-value=2.4 Score=42.26 Aligned_cols=109 Identities=23% Similarity=0.234 Sum_probs=67.9
Q ss_pred CeEEEEeccCCC-CHHHHHHHHHhhhhc----CCCeEEEEecCceeEeecc-ccCCC---CCCC--------hhhhhhcc
Q psy1686 176 PGVLFIDEVHML-DIECFSFLNRALESE----MSPVVITATNRGVTKIRGT-AYSSP---HGIP--------IDLLDRMV 238 (448)
Q Consensus 176 ~~VLfIDEVH~L-~~~~f~~Llk~lEe~----~~pi~IlaT~~~i~lI~~T-tenp~---~~Ip--------~~lLSR~~ 238 (448)
+-|+|+|+.-.= +...+..|-.++|.. |..++|-||...=-+|.-+ .+|.. -+|. .+|-+|+.
T Consensus 107 kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFG 186 (249)
T PF05673_consen 107 KFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFG 186 (249)
T ss_pred CEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCC
Confidence 579999995422 224455555555544 3448877776544444333 22211 1111 25778985
Q ss_pred -cccCCCCCHHHHHHHHHHhc------CC-----HHHHHHHHHHcCCCCHHHHHHHHHH
Q psy1686 239 -IIPTQPYQDEEIQAILKIRL------MQ-----TDGLRVLTKIALDTSLRYAIQLITT 285 (448)
Q Consensus 239 -ii~~~pys~~eI~~IL~~Ra------i~-----deal~~La~~a~~Gd~R~AL~lLe~ 285 (448)
.+.|.|.+.++--+|++.-+ ++ .+|+.|-...+ +-|.|.|-+....
T Consensus 187 L~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg-~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 187 LWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRG-GRSGRTARQFIDD 244 (249)
T ss_pred cEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 89999999999888887544 55 46666666665 5588888776553
No 243
>KOG0735|consensus
Probab=90.94 E-value=1.5 Score=49.64 Aligned_cols=115 Identities=26% Similarity=0.311 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCH-----------HHHHHHHHhhhhcCC--CeEEEEecCceeEee
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDI-----------ECFSFLNRALESEMS--PVVITATNRGVTKIR 219 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~-----------~~f~~Llk~lEe~~~--pi~IlaT~~~i~lI~ 219 (448)
+.+|+...+|.. ..|+|||.||++.+-+ -..|-|+--++.... .++|+|.+..
T Consensus 747 q~vR~lF~rA~~---------a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsR----- 812 (952)
T KOG0735|consen 747 QNVRDLFERAQS---------AKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSR----- 812 (952)
T ss_pred HHHHHHHHHhhc---------cCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCC-----
Confidence 678887776631 2589999999999832 456666666654432 2333332221
Q ss_pred ccccCCCCCCChhhh-----hhcccccCCCCCHH---HHHHHHHHhc-CCHHH-HHHHHHHcCCC-CHHHHHHHHHHHHH
Q psy1686 220 GTAYSSPHGIPIDLL-----DRMVIIPTQPYQDE---EIQAILKIRL-MQTDG-LRVLTKIALDT-SLRYAIQLITTASV 288 (448)
Q Consensus 220 ~Ttenp~~~Ip~~lL-----SR~~ii~~~pys~~---eI~~IL~~Ra-i~dea-l~~La~~a~~G-d~R~AL~lLe~a~~ 288 (448)
|--|-++|| +||..-. .-+.. ||.+.|..+- +++++ ++++|... +| +.-+--.+|.-|..
T Consensus 813 ------pdliDpALLRpGRlD~~v~C~--~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T-~g~tgADlq~ll~~A~l 883 (952)
T KOG0735|consen 813 ------PDLIDPALLRPGRLDKLVYCP--LPDEPERLEILQVLSNSLLKDTDVDLECLAQKT-DGFTGADLQSLLYNAQL 883 (952)
T ss_pred ------ccccCHhhcCCCccceeeeCC--CCCcHHHHHHHHHHhhccCCccccchHHHhhhc-CCCchhhHHHHHHHHHH
Confidence 333445543 5552222 22222 3444444333 55554 78888887 44 55555566666655
Q ss_pred Hh
Q psy1686 289 VC 290 (448)
Q Consensus 289 ~a 290 (448)
.|
T Consensus 884 ~a 885 (952)
T KOG0735|consen 884 AA 885 (952)
T ss_pred HH
Confidence 43
No 244
>KOG0480|consensus
Probab=90.41 E-value=1.8 Score=48.48 Aligned_cols=134 Identities=17% Similarity=0.266 Sum_probs=84.2
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhcCCCe---EEEEec-CceeEeecc-----------ccCCCCCCChhhhhhcccc-
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESEMSPV---VITATN-RGVTKIRGT-----------AYSSPHGIPIDLLDRMVII- 240 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi---~IlaT~-~~i~lI~~T-----------tenp~~~Ip~~lLSR~~ii- 240 (448)
||-+|||++-.+...+-+|..|+|...-.+ =|.||- -....|.|+ |-+-.-.+.++++||+=.|
T Consensus 444 GICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~F 523 (764)
T KOG0480|consen 444 GICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFF 523 (764)
T ss_pred ceEEechhcccChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEE
Confidence 899999999999999999999999764210 000110 000112221 2111233678999998432
Q ss_pred cC------------------------------CCCCHHHHHHHHHH-hc----CCHHHHHHHHHH--------c------
Q psy1686 241 PT------------------------------QPYQDEEIQAILKI-RL----MQTDGLRVLTKI--------A------ 271 (448)
Q Consensus 241 ~~------------------------------~pys~~eI~~IL~~-Ra----i~deal~~La~~--------a------ 271 (448)
-+ .+|+.++++.-|.+ |. ++.+|-++|.+. +
T Consensus 524 iLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~ 603 (764)
T KOG0480|consen 524 ILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRS 603 (764)
T ss_pred EEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcc
Confidence 11 26777777776664 22 888888888776 1
Q ss_pred -CCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 272 -LDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 272 -~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
..=+.|..=+++..+-..|+.+....||.++|++++.+.
T Consensus 604 s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLl 643 (764)
T KOG0480|consen 604 SYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELL 643 (764)
T ss_pred cccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHH
Confidence 011466666666665555655567789999999999863
No 245
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=90.36 E-value=0.46 Score=40.67 Aligned_cols=34 Identities=32% Similarity=0.398 Sum_probs=26.4
Q ss_pred eEEEEeccCCC-CHHHHHHHHHhhhhcCCCeEEEE
Q psy1686 177 GVLFIDEVHML-DIECFSFLNRALESEMSPVVITA 210 (448)
Q Consensus 177 ~VLfIDEVH~L-~~~~f~~Llk~lEe~~~pi~Ila 210 (448)
.+++|||+|+| +.+.+++|...+++...++++.+
T Consensus 89 ~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G 123 (131)
T PF13401_consen 89 VLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVG 123 (131)
T ss_dssp EEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEE
T ss_pred eEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEE
Confidence 69999999999 99999999888784444444433
No 246
>PF14516 AAA_35: AAA-like domain
Probab=90.25 E-value=1.6 Score=44.75 Aligned_cols=92 Identities=27% Similarity=0.302 Sum_probs=59.2
Q ss_pred cCeEEEEeccCCCCH------HHHHHHHHhhhhcC-CC-----eEEEEecCceeEeeccccCCCCCCChhhhhhcccccC
Q psy1686 175 VPGVLFIDEVHMLDI------ECFSFLNRALESEM-SP-----VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPT 242 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~------~~f~~Llk~lEe~~-~p-----i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~ 242 (448)
.|-|||||||+.+.. +-|..|...++... .| .+|++-......+ ....+|||-| +.-+++
T Consensus 127 ~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~-~~~~~SPFNI-------g~~i~L 198 (331)
T PF14516_consen 127 KPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYII-LDINQSPFNI-------GQPIEL 198 (331)
T ss_pred CCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccc-cCCCCCCccc-------ccceeC
Confidence 478999999998853 23333334444322 11 3444433222222 3335677766 235788
Q ss_pred CCCCHHHHHHHHHHhc---CCHHHHHHHHHHcCCCCH
Q psy1686 243 QPYQDEEIQAILKIRL---MQTDGLRVLTKIALDTSL 276 (448)
Q Consensus 243 ~pys~~eI~~IL~~Ra---i~deal~~La~~a~~Gd~ 276 (448)
.++|.+|+.+.++ +. .+++.++.|-... +|=+
T Consensus 199 ~~Ft~~ev~~L~~-~~~~~~~~~~~~~l~~~t-gGhP 233 (331)
T PF14516_consen 199 PDFTPEEVQELAQ-RYGLEFSQEQLEQLMDWT-GGHP 233 (331)
T ss_pred CCCCHHHHHHHHH-hhhccCCHHHHHHHHHHH-CCCH
Confidence 9999999998877 44 8888899999998 8866
No 247
>KOG0744|consensus
Probab=89.18 E-value=2.7 Score=43.86 Aligned_cols=97 Identities=28% Similarity=0.346 Sum_probs=62.7
Q ss_pred chhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCC---------------HHHHHHHHHhhhhcCC
Q psy1686 140 FLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLD---------------IECFSFLNRALESEMS 204 (448)
Q Consensus 140 ~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~---------------~~~f~~Llk~lEe~~~ 204 (448)
||.-|+-. .++=..+-+.+.+..+..+.- .-+.||||..|. .-..|+|+--++.--.
T Consensus 223 FSKWFsES-----gKlV~kmF~kI~ELv~d~~~l---VfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~ 294 (423)
T KOG0744|consen 223 FSKWFSES-----GKLVAKMFQKIQELVEDRGNL---VFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKR 294 (423)
T ss_pred HHHHHhhh-----hhHHHHHHHHHHHHHhCCCcE---EEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhcc
Confidence 55655544 344455555556666554432 345599999983 2446777766665432
Q ss_pred -C-eEEEEecCceeEeeccccCCCCCCChhhhhhcc-cccCCCCCHHHHHHHHH
Q psy1686 205 -P-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV-IIPTQPYQDEEIQAILK 255 (448)
Q Consensus 205 -p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~-ii~~~pys~~eI~~IL~ 255 (448)
| ++|+||..- ...|-.++.+|.- ++..-|-+...+.+|++
T Consensus 295 ~~NvliL~TSNl-----------~~siD~AfVDRADi~~yVG~Pt~~ai~~Ilk 337 (423)
T KOG0744|consen 295 YPNVLILATSNL-----------TDSIDVAFVDRADIVFYVGPPTAEAIYEILK 337 (423)
T ss_pred CCCEEEEeccch-----------HHHHHHHhhhHhhheeecCCccHHHHHHHHH
Confidence 3 888888751 2346688999985 66667778888899988
No 248
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=88.60 E-value=0.82 Score=50.67 Aligned_cols=113 Identities=23% Similarity=0.291 Sum_probs=76.0
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC-CCeEEEEecCceeEeeccc-------cCCCCCCChhhhhhc--ccccCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM-SPVVITATNRGVTKIRGTA-------YSSPHGIPIDLLDRM--VIIPTQPY 245 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~-~pi~IlaT~~~i~lI~~Tt-------enp~~~Ip~~lLSR~--~ii~~~py 245 (448)
.+-||+|||-.+.-..|+.|++.++|-. .|+==-...-.|-+|.||+ ++-- .-.+|-=|. .+|.+.|+
T Consensus 408 gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~--fredLyyrL~~~~i~lP~l 485 (606)
T COG3284 408 GGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGR--FREDLYYRLNAFVITLPPL 485 (606)
T ss_pred CCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCC--chHHHHHHhcCeeeccCch
Confidence 3789999999999999999999999853 1200000011223444442 1112 234555554 36777777
Q ss_pred CHH-----HHHHHHHHhc-----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy1686 246 QDE-----EIQAILKIRL-----MQTDGLRVLTKIALDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 246 s~~-----eI~~IL~~Ra-----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a 290 (448)
.+. .|..+++... ++++++..|..+.=-|+.|...|.|+.++..+
T Consensus 486 r~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~ 540 (606)
T COG3284 486 RERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALS 540 (606)
T ss_pred hcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC
Confidence 653 4566666432 99999999988877899999999999998776
No 249
>KOG0739|consensus
Probab=88.58 E-value=2.1 Score=44.28 Aligned_cols=88 Identities=22% Similarity=0.303 Sum_probs=49.3
Q ss_pred cCeEEEEeccCCCCH-------H-----HHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccC
Q psy1686 175 VPGVLFIDEVHMLDI-------E-----CFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPT 242 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~-------~-----~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~ 242 (448)
.|.|+|||||+.|.. + --.||...+- +.-.+.|+-.+|||+. |.-+-.+++.|+--=-.
T Consensus 225 kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqG-------VG~d~~gvLVLgATNi--Pw~LDsAIRRRFekRIY 295 (439)
T KOG0739|consen 225 KPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQG-------VGNDNDGVLVLGATNI--PWVLDSAIRRRFEKRIY 295 (439)
T ss_pred CCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhc-------cccCCCceEEEecCCC--chhHHHHHHHHhhccee
Confidence 589999999998821 1 1234443332 2223455566666642 55577788888741112
Q ss_pred CCCCHHHHHHHHH-Hhc------CCHHHHHHHHHHc
Q psy1686 243 QPYQDEEIQAILK-IRL------MQTDGLRVLTKIA 271 (448)
Q Consensus 243 ~pys~~eI~~IL~-~Ra------i~deal~~La~~a 271 (448)
-|+.+..-+..+- ... +++.-+..|++..
T Consensus 296 IPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kT 331 (439)
T KOG0739|consen 296 IPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKT 331 (439)
T ss_pred ccCCcHHHhhhhheeccCCCccccchhhHHHHHhhc
Confidence 3555544433322 111 7777777787775
No 250
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=88.55 E-value=2.3 Score=37.62 Aligned_cols=60 Identities=23% Similarity=0.276 Sum_probs=49.4
Q ss_pred HHHHHHHHhc---CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhcc
Q psy1686 249 EIQAILKIRL---MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLD 312 (448)
Q Consensus 249 eI~~IL~~Ra---i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~D 312 (448)
=+..||+.-. +++++...|.+++ -||+..+|..|..+|...+++.|+.+||+-+.+...+
T Consensus 6 ~v~~iLk~~Gv~~~~~~v~~~Lle~~----~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~ 68 (117)
T cd07979 6 VIAAILKSMGITEYEPRVINQLLEFA----YRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVD 68 (117)
T ss_pred HHHHHHHHCCCCccCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 3567777312 9999999999998 4899999999999987667889999999988875443
No 251
>KOG0735|consensus
Probab=88.55 E-value=7.6 Score=44.31 Aligned_cols=144 Identities=14% Similarity=0.144 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCH----------HHH----HHHHHhhhhcCCCeEEEEecCce-eE
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDI----------ECF----SFLNRALESEMSPVVITATNRGV-TK 217 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~----------~~f----~~Llk~lEe~~~pi~IlaT~~~i-~l 217 (448)
+.+.+.++.+......++ |.|+++|++|-|-. ..- .||+..+-++. +++.. .+
T Consensus 477 e~iQk~l~~vfse~~~~~-----PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~-------~~~~~ia~ 544 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYA-----PSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYL-------KRNRKIAV 544 (952)
T ss_pred HHHHHHHHHHHHHHHhhC-----CcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHH-------ccCcEEEE
Confidence 455555555555555555 68999999999932 122 23333333322 22222 33
Q ss_pred eeccccCCCCCCChhhhhh--cc-cccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Q psy1686 218 IRGTAYSSPHGIPIDLLDR--MV-IIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDT-SLRYAIQLITTAS 287 (448)
Q Consensus 218 I~~Ttenp~~~Ip~~lLSR--~~-ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~G-d~R~AL~lLe~a~ 287 (448)
|+.- +....+|+.|-|- ++ ++.+.+....+=++||+.-+ +..+-|++++... +| ++++---+.++|.
T Consensus 545 Iat~--qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~T-EGy~~~DL~ifVeRai 621 (952)
T KOG0735|consen 545 IATG--QELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKT-EGYLATDLVIFVERAI 621 (952)
T ss_pred EEec--hhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhc-CCccchhHHHHHHHHH
Confidence 3222 1234455554443 22 77889999988888887644 4566688898888 55 9999999999997
Q ss_pred HHhh--h--hCCCcccHHHHHHHHHHhc
Q psy1686 288 VVCR--R--RKATEICMEDIRKVYALFL 311 (448)
Q Consensus 288 ~~a~--~--~~~~~It~e~V~~~~~lf~ 311 (448)
-.|. . .+.+.+|.++..+++.-|.
T Consensus 622 ~~a~leris~~~klltke~f~ksL~~F~ 649 (952)
T KOG0735|consen 622 HEAFLERISNGPKLLTKELFEKSLKDFV 649 (952)
T ss_pred HHHHHHHhccCcccchHHHHHHHHHhcC
Confidence 6654 1 2345799999999987554
No 252
>KOG1968|consensus
Probab=88.43 E-value=2.3 Score=49.44 Aligned_cols=98 Identities=18% Similarity=0.117 Sum_probs=78.9
Q ss_pred eEEEEeccCCCCH---HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHH
Q psy1686 177 GVLFIDEVHMLDI---ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAI 253 (448)
Q Consensus 177 ~VLfIDEVH~L~~---~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~I 253 (448)
.|+++|||.-+.. .-+..|....+....|++..+..+ -|.-+.++..=|..++|+.-+.+.+...
T Consensus 430 ~vil~devD~~~~~dRg~v~~l~~l~~ks~~Piv~~cndr------------~~p~sr~~~~~~~~l~f~kP~~~~i~~r 497 (871)
T KOG1968|consen 430 FLILMDEVDGMFGEDRGGVSKLSSLCKKSSRPLVCTCNDR------------NLPKSRALSRACSDLRFSKPSSELIRSR 497 (871)
T ss_pred eEEEEeccccccchhhhhHHHHHHHHHhccCCeEEEecCC------------CCccccchhhhcceeeecCCcHHHHHhh
Confidence 5889999998844 668888888887778988877776 4444445555578999999999988776
Q ss_pred HHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy1686 254 LKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTAS 287 (448)
Q Consensus 254 L~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~ 287 (448)
|.--| |+++.++-+.+.+ +||+|..++.|....
T Consensus 498 i~si~~se~~ki~~~~l~~~s~~~-~~DiR~~i~~lq~~~ 536 (871)
T KOG1968|consen 498 IMSICKSEGIKISDDVLEEISKLS-GGDIRQIIMQLQFWS 536 (871)
T ss_pred hhhhhcccceecCcHHHHHHHHhc-ccCHHHHHHHHhhhh
Confidence 66434 9999999999999 999999999998763
No 253
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=87.51 E-value=7.2 Score=39.89 Aligned_cols=126 Identities=12% Similarity=0.042 Sum_probs=74.6
Q ss_pred cccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcchhh--hhhhccCccccccCCCccCCCCccccCCCccc
Q psy1686 39 VSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKVKK--ISTATGREEEPDYDGWLADVTKDLRCPDGELQ 116 (448)
Q Consensus 39 ~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt~~--I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~ 116 (448)
...+++|=...|+-...++-+-+.|++ +..+|...-|||++. +.++.+..- ..+-+. ++
T Consensus 70 ~~~~~l~tkt~r~~~~~~~~A~k~g~l----~~vyg~~g~gKt~a~~~y~~s~p~~~-------------l~~~~p--~~ 130 (297)
T COG2842 70 LAPDFLETKTVRRIFFRTRPASKTGSL----VVVYGYAGLGKTQAAKNYAPSNPNAL-------------LIEADP--SY 130 (297)
T ss_pred ccccccccchhHhHhhhhhhhhhcCce----EEEeccccchhHHHHHhhcccCccce-------------eecCCh--hh
Confidence 368889988888877888888777764 446665423776543 332222111 111000 11
Q ss_pred ceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHH
Q psy1686 117 KRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLN 196 (448)
Q Consensus 117 k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Ll 196 (448)
...++.+.++++.- .+ .. -.+++.+....... .+ ....+++||..+|....|+-|-
T Consensus 131 ------~a~~~i~~i~~~~~-------~~-~~----~~~~d~~~~~~~~l--~~----~~~~iivDEA~~L~~~ale~lr 186 (297)
T COG2842 131 ------TALVLILIICAAAF-------GA-TD----GTINDLTERLMIRL--RD----TVRLIIVDEADRLPYRALEELR 186 (297)
T ss_pred ------HHHHHHHHHHHHHh-------cc-cc----hhHHHHHHHHHHHH--cc----CcceeeeehhhccChHHHHHHH
Confidence 13567777777653 11 11 23444444443333 22 2478999999999999999999
Q ss_pred HhhhhcCCCeE
Q psy1686 197 RALESEMSPVV 207 (448)
Q Consensus 197 k~lEe~~~pi~ 207 (448)
+.++....-.+
T Consensus 187 ~i~d~~Gi~~v 197 (297)
T COG2842 187 RIHDKTGIGVV 197 (297)
T ss_pred HHHHhhCceEE
Confidence 99887554433
No 254
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=87.20 E-value=2.3 Score=52.58 Aligned_cols=92 Identities=21% Similarity=0.360 Sum_probs=68.2
Q ss_pred EEEEeccCCCCHHHHHHHHHhhhhcC-------------CC-eEEEEecCceeEeeccccCCCC------CCChhhhhhc
Q psy1686 178 VLFIDEVHMLDIECFSFLNRALESEM-------------SP-VVITATNRGVTKIRGTAYSSPH------GIPIDLLDRM 237 (448)
Q Consensus 178 VLfIDEVH~L~~~~f~~Llk~lEe~~-------------~p-i~IlaT~~~i~lI~~Ttenp~~------~Ip~~lLSR~ 237 (448)
-+++||.+.--.+...+|||.+.|.- .| ..++||. |||- ++..+++.|+
T Consensus 958 WIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQ-----------Nppg~YgGRK~LSrAFRNRF 1026 (4600)
T COG5271 958 WIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQ-----------NPPGGYGGRKGLSRAFRNRF 1026 (4600)
T ss_pred EEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeec-----------CCCccccchHHHHHHHHhhh
Confidence 46789999999999999999999863 22 2333433 4543 3567999999
Q ss_pred ccccCCCCCHHHHHHHHHHhc-CCHHHHHHHHHHcCCC-CHHHHHH
Q psy1686 238 VIIPTQPYQDEEIQAILKIRL-MQTDGLRVLTKIALDT-SLRYAIQ 281 (448)
Q Consensus 238 ~ii~~~pys~~eI~~IL~~Ra-i~deal~~La~~a~~G-d~R~AL~ 281 (448)
+-+.|....++|+..||..|| |.+.-...|++.= +| +.|+.++
T Consensus 1027 lE~hFddipedEle~ILh~rc~iapSyakKiVeVy-r~Ls~rRs~~ 1071 (4600)
T COG5271 1027 LEMHFDDIPEDELEEILHGRCEIAPSYAKKIVEVY-RGLSSRRSIN 1071 (4600)
T ss_pred HhhhcccCcHHHHHHHHhccCccCHHHHHHHHHHH-HHhhhhhhHH
Confidence 999999999999999999999 7776555565553 33 5555544
No 255
>KOG1808|consensus
Probab=87.19 E-value=2.1 Score=53.01 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=54.5
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhcCC---C-----------eEEEEecCceeEeeccccCCCCCCChhhhhhcccccC
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESEMS---P-----------VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPT 242 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~~~---p-----------i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~ 242 (448)
...|+||+|+-..+.+.+|+|++++.-. | ..++||-.--...++- -.+-.++++|+..++|
T Consensus 509 ~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~gr-----k~lsRa~~~rf~e~~f 583 (1856)
T KOG1808|consen 509 DWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGR-----KILSRALRNRFIELHF 583 (1856)
T ss_pred CEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchh-----hhhhhcccccchhhhh
Confidence 5788999999999999999999998421 1 1222222210001111 1234688899999999
Q ss_pred CCCCHHHHHHHHHHhc
Q psy1686 243 QPYQDEEIQAILKIRL 258 (448)
Q Consensus 243 ~pys~~eI~~IL~~Ra 258 (448)
--..++++..|+..||
T Consensus 584 ~~~~e~e~~~i~~~~~ 599 (1856)
T KOG1808|consen 584 DDIGEEELEEILEHRC 599 (1856)
T ss_pred hhcCchhhhhhhcccc
Confidence 9999999999999888
No 256
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=86.93 E-value=3.8 Score=33.00 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 246 QDEEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 246 s~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
+...|.+.++... ++++|.+.|.+++. -++.++++.|..+|..+++..|+.+||+-++..-
T Consensus 3 ~k~~l~~lv~~id~~~~~~~da~~~l~~~~e----~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r~ 67 (72)
T cd07981 3 TKRKLQELLKEIDPREQLDPDVEELLLEIAD----DFVDDVVEDACRLAKHRKSDTLEVKDVQLHLERN 67 (72)
T ss_pred cHHHHHHHHHhhCCCCCcCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 3445566666333 99999999999983 3888999999999987788899999999887653
No 257
>PRK04841 transcriptional regulator MalT; Provisional
Probab=86.28 E-value=6.7 Score=44.78 Aligned_cols=96 Identities=24% Similarity=0.344 Sum_probs=60.6
Q ss_pred CeEEEEeccCCCCHH-HHHHHHHhhhhcCC-CeEEEEecCceeEeeccccCCCCCCChhhh--hhcccccCC--CCCHHH
Q psy1686 176 PGVLFIDEVHMLDIE-CFSFLNRALESEMS-PVVITATNRGVTKIRGTAYSSPHGIPIDLL--DRMVIIPTQ--PYQDEE 249 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~-~f~~Llk~lEe~~~-pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lL--SR~~ii~~~--pys~~e 249 (448)
|-+|+||++|.++.. ...+|...+...+. .++|+++ +. .|+..+ ..+. .++..+... +++.+|
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~s-R~---------~~~~~~-~~l~~~~~~~~l~~~~l~f~~~e 190 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLS-RN---------LPPLGI-ANLRVRDQLLEIGSQQLAFDHQE 190 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEe-CC---------CCCCch-HhHHhcCcceecCHHhCCCCHHH
Confidence 689999999999743 34456555655443 3555543 31 223322 1222 223344444 999999
Q ss_pred HHHHHHHhc---CCHHHHHHHHHHcCCCCHHHHHHHHH
Q psy1686 250 IQAILKIRL---MQTDGLRVLTKIALDTSLRYAIQLIT 284 (448)
Q Consensus 250 I~~IL~~Ra---i~deal~~La~~a~~Gd~R~AL~lLe 284 (448)
..+.+..+. ++++.++.|.+.+ +|.+ .++.++-
T Consensus 191 ~~~ll~~~~~~~~~~~~~~~l~~~t-~Gwp-~~l~l~~ 226 (903)
T PRK04841 191 AQQFFDQRLSSPIEAAESSRLCDDV-EGWA-TALQLIA 226 (903)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHh-CChH-HHHHHHH
Confidence 999997554 8899999999998 8877 3444433
No 258
>KOG0741|consensus
Probab=85.97 E-value=14 Score=41.07 Aligned_cols=94 Identities=18% Similarity=0.278 Sum_probs=53.1
Q ss_pred eEEEEeccCCC----------CHHHHHHHHHhhhhcCC---CeEEEEecCceeEeeccccCCCCCCChhhhhhcc-----
Q psy1686 177 GVLFIDEVHML----------DIECFSFLNRALESEMS---PVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV----- 238 (448)
Q Consensus 177 ~VLfIDEVH~L----------~~~~f~~Llk~lEe~~~---pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~----- 238 (448)
.|+++|++.+| +.-...+|+=++-..|. -.+|++|+.. .++|.+|-
T Consensus 600 siivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~----------------~~vL~~m~i~~~F 663 (744)
T KOG0741|consen 600 SIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSR----------------REVLQEMGILDCF 663 (744)
T ss_pred eEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccH----------------HHHHHHcCHHHhh
Confidence 78999999998 22334444444443332 1788888763 34444442
Q ss_pred --cccCCCCCH-HHHHHHHHHhc-CCHHHHHHHHHHcC----CCCHHHHHHHHHHH
Q psy1686 239 --IIPTQPYQD-EEIQAILKIRL-MQTDGLRVLTKIAL----DTSLRYAIQLITTA 286 (448)
Q Consensus 239 --ii~~~pys~-~eI~~IL~~Ra-i~deal~~La~~a~----~Gd~R~AL~lLe~a 286 (448)
.+....++. +++.++|..-- ++|+....++.--. .-....-|.++|.|
T Consensus 664 ~~~i~Vpnl~~~~~~~~vl~~~n~fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a 719 (744)
T KOG0741|consen 664 SSTIHVPNLTTGEQLLEVLEELNIFSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMA 719 (744)
T ss_pred hheeecCccCchHHHHHHHHHccCCCcchhHHHHHHHhccccchhHHHHHHHHHHH
Confidence 455566665 67777777322 66666655554320 11355566666655
No 259
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=85.04 E-value=0.7 Score=43.08 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=24.9
Q ss_pred eEEEEeccCCCCH-----------HHHHHHHHhhhhcC
Q psy1686 177 GVLFIDEVHMLDI-----------ECFSFLNRALESEM 203 (448)
Q Consensus 177 ~VLfIDEVH~L~~-----------~~f~~Llk~lEe~~ 203 (448)
+|+|+|||+-..+ ..|+.|++.+|+-.
T Consensus 70 gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~ 107 (171)
T PF07724_consen 70 GVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGT 107 (171)
T ss_dssp TEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSE
T ss_pred hhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccc
Confidence 5999999999999 99999999999753
No 260
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=84.55 E-value=2.9 Score=43.92 Aligned_cols=80 Identities=19% Similarity=0.077 Sum_probs=48.2
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCC--CeEEEEecCceeEeeccccCC-----CCCCChhhhhhcccccCCCCC-H
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMS--PVVITATNRGVTKIRGTAYSS-----PHGIPIDLLDRMVIIPTQPYQ-D 247 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~--pi~IlaT~~~i~lI~~Ttenp-----~~~Ip~~lLSR~~ii~~~pys-~ 247 (448)
+||+-+||+.-.+.+.++.|+.++|+-.- |-.+....-...+|..+++.. ..+.+.+|++||.++++.... .
T Consensus 237 rGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~vpY~l~~ 316 (361)
T smart00763 237 RGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVKVPYCLRV 316 (361)
T ss_pred CceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEeCCCcCCH
Confidence 59999999999999999999999997531 101001111122333332211 136789999999877764333 3
Q ss_pred HHHHHHHH
Q psy1686 248 EEIQAILK 255 (448)
Q Consensus 248 ~eI~~IL~ 255 (448)
++=.+|.+
T Consensus 317 ~~E~~Iy~ 324 (361)
T smart00763 317 SEEAQIYE 324 (361)
T ss_pred HHHHHHHH
Confidence 33344444
No 261
>PRK06526 transposase; Provisional
Probab=83.90 E-value=4 Score=40.50 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=22.4
Q ss_pred CeEEEEeccCCCC--HHHHHHHHHhhhhcC-CCeEEEEecC
Q psy1686 176 PGVLFIDEVHMLD--IECFSFLNRALESEM-SPVVITATNR 213 (448)
Q Consensus 176 ~~VLfIDEVH~L~--~~~f~~Llk~lEe~~-~pi~IlaT~~ 213 (448)
+.+|+|||+|++. ....+.|...+.... ...+|++||.
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~ 200 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNK 200 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCC
Confidence 4899999999983 555455555543311 1235555554
No 262
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=83.14 E-value=6.1 Score=47.24 Aligned_cols=64 Identities=14% Similarity=0.083 Sum_probs=37.9
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhc-CCCeEEEEecCceeEeeccccCCCCCCChhhhhhc---ccccCCCCCHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESE-MSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM---VIIPTQPYQDEEIQ 251 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~-~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~---~ii~~~pys~~eI~ 251 (448)
+-++++|+|.. .++.+.|....+.. +...+|+.|.. ..++..+ .++.++.++.+|-.
T Consensus 297 rvLLVLDdv~~--~~~l~~L~~~~~~~~~GsrIIiTTrd-----------------~~vl~~~~~~~~~~v~~l~~~ea~ 357 (1153)
T PLN03210 297 KVLIFIDDLDD--QDVLDALAGQTQWFGSGSRIIVITKD-----------------KHFLRAHGIDHIYEVCLPSNELAL 357 (1153)
T ss_pred eEEEEEeCCCC--HHHHHHHHhhCccCCCCcEEEEEeCc-----------------HHHHHhcCCCeEEEecCCCHHHHH
Confidence 46888999864 46677766544422 12244444443 1222211 36777888888888
Q ss_pred HHHHHhc
Q psy1686 252 AILKIRL 258 (448)
Q Consensus 252 ~IL~~Ra 258 (448)
+++..+|
T Consensus 358 ~LF~~~A 364 (1153)
T PLN03210 358 EMFCRSA 364 (1153)
T ss_pred HHHHHHh
Confidence 8887666
No 263
>CHL00195 ycf46 Ycf46; Provisional
Probab=81.51 E-value=23 Score=38.64 Aligned_cols=112 Identities=19% Similarity=0.284 Sum_probs=70.5
Q ss_pred CeEEEEeccCCC--CHHHHHHHHH---hhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHH
Q psy1686 176 PGVLFIDEVHML--DIECFSFLNR---ALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEI 250 (448)
Q Consensus 176 ~~VLfIDEVH~L--~~~~f~~Llk---~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI 250 (448)
++|+++-++|.| +......|.. .....+..+++++ . ...+|.+|-.=+.++.+.--+.+||
T Consensus 82 ~~~~vl~d~h~~~~~~~~~r~l~~l~~~~~~~~~~~i~~~-~-------------~~~~p~el~~~~~~~~~~lP~~~ei 147 (489)
T CHL00195 82 PALFLLKDFNRFLNDISISRKLRNLSRILKTQPKTIIIIA-S-------------ELNIPKELKDLITVLEFPLPTESEI 147 (489)
T ss_pred CcEEEEecchhhhcchHHHHHHHHHHHHHHhCCCEEEEEc-C-------------CCCCCHHHHhceeEEeecCcCHHHH
Confidence 589999999999 3333222222 2222111122222 2 2458888777666889999999999
Q ss_pred HHHHHHhc------CCHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHH
Q psy1686 251 QAILKIRL------MQTDGLRVLTKIALDT-SLRYAIQLITTASVVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 251 ~~IL~~Ra------i~deal~~La~~a~~G-d~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~ 307 (448)
.++|+.-+ ++++.++.|++.+ .| +.-.+-+++..+. +. .+.++.+++..++
T Consensus 148 ~~~l~~~~~~~~~~~~~~~~~~l~~~~-~gls~~~~~~~~~~~~--~~---~~~~~~~~~~~i~ 205 (489)
T CHL00195 148 KKELTRLIKSLNIKIDSELLENLTRAC-QGLSLERIRRVLSKII--AT---YKTIDENSIPLIL 205 (489)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHh-CCCCHHHHHHHHHHHH--HH---cCCCChhhHHHHH
Confidence 99987432 8999999999998 55 5555555555442 21 2247777665444
No 264
>KOG1051|consensus
Probab=81.46 E-value=7.7 Score=45.23 Aligned_cols=68 Identities=24% Similarity=0.227 Sum_probs=41.6
Q ss_pred CeEEEEeccCCCCH--------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccc---cCCCCCCChhhhhhcccccCCC
Q psy1686 176 PGVLFIDEVHMLDI--------ECFSFLNRALESEMSPVVITATNRGVTKIRGTA---YSSPHGIPIDLLDRMVIIPTQP 244 (448)
Q Consensus 176 ~~VLfIDEVH~L~~--------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Tt---enp~~~Ip~~lLSR~~ii~~~p 244 (448)
.-||||||+|.|.. +.-+.|-.++- .+++.+||+|| +.-...--|++-.|++.+.+.-
T Consensus 281 gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~-----------rg~l~~IGatT~e~Y~k~iekdPalErrw~l~~v~~ 349 (898)
T KOG1051|consen 281 GVILFLGELHWLVGSGSNYGAIDAANLLKPLLA-----------RGGLWCIGATTLETYRKCIEKDPALERRWQLVLVPI 349 (898)
T ss_pred cEEEEecceeeeecCCCcchHHHHHHhhHHHHh-----------cCCeEEEecccHHHHHHHHhhCcchhhCcceeEecc
Confidence 47999999999933 33343333333 46688999997 2233344566777776555555
Q ss_pred CCHHHHHHHH
Q psy1686 245 YQDEEIQAIL 254 (448)
Q Consensus 245 ys~~eI~~IL 254 (448)
-+.++...||
T Consensus 350 pS~~~~~~iL 359 (898)
T KOG1051|consen 350 PSVENLSLIL 359 (898)
T ss_pred Ccccchhhhh
Confidence 5555544444
No 265
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=81.22 E-value=2.1 Score=46.27 Aligned_cols=78 Identities=24% Similarity=0.310 Sum_probs=51.6
Q ss_pred HHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCC------CeEEEEecCceeEeeccccCCCCCCChhhhhhc
Q psy1686 164 TEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMS------PVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM 237 (448)
Q Consensus 164 ~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~------pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~ 237 (448)
....+-|+.+=.+-|+|+||+|.|..++=.+|+.-+|.-.- -=+.+.| .| |.-||.++|+-+
T Consensus 244 e~LPEvGD~dkPklVfFfDEAHLLF~da~kall~~ieqvvrLIRSKGVGv~fvT-----------Q~-P~DiP~~VL~QL 311 (502)
T PF05872_consen 244 EQLPEVGDLDKPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIRSKGVGVYFVT-----------QN-PTDIPDDVLGQL 311 (502)
T ss_pred HhCccCCCCCCceEEEEEechhhhhcCCCHHHHHHHHHHHHHhhccCceEEEEe-----------CC-CCCCCHHHHHhh
Confidence 34456677774345677999999987777777777774321 1111223 33 677999999987
Q ss_pred c-cc--cCCCCCHHHHHHH
Q psy1686 238 V-II--PTQPYQDEEIQAI 253 (448)
Q Consensus 238 ~-ii--~~~pys~~eI~~I 253 (448)
. -| -++.||+.|-+.+
T Consensus 312 GnrIQHaLRAfTP~DqKav 330 (502)
T PF05872_consen 312 GNRIQHALRAFTPKDQKAV 330 (502)
T ss_pred hhHHHHHHhcCCHhHHHHH
Confidence 4 33 5788888887665
No 266
>PRK08116 hypothetical protein; Validated
Probab=80.87 E-value=1.4 Score=43.90 Aligned_cols=25 Identities=12% Similarity=0.104 Sum_probs=16.1
Q ss_pred eEEEEeccCC--CCHHHHHHHHHhhhh
Q psy1686 177 GVLFIDEVHM--LDIECFSFLNRALES 201 (448)
Q Consensus 177 ~VLfIDEVH~--L~~~~f~~Llk~lEe 201 (448)
++|+|||++. .+...+..|...+..
T Consensus 180 dlLviDDlg~e~~t~~~~~~l~~iin~ 206 (268)
T PRK08116 180 DLLILDDLGAERDTEWAREKVYNIIDS 206 (268)
T ss_pred CEEEEecccCCCCCHHHHHHHHHHHHH
Confidence 7999999954 454445555555543
No 267
>KOG0732|consensus
Probab=80.85 E-value=17 Score=43.23 Aligned_cols=102 Identities=27% Similarity=0.271 Sum_probs=60.3
Q ss_pred CCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCH-----------HHHHHHHHhhhhcCC---CeEEEEecCc
Q psy1686 149 GEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDI-----------ECFSFLNRALESEMS---PVVITATNRG 214 (448)
Q Consensus 149 ~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~-----------~~f~~Llk~lEe~~~---pi~IlaT~~~ 214 (448)
+|--..+|-.-.++. +. +|-|+|.|||.=|-+ ...+-|+-.+..-.+ -++|.|||+
T Consensus 346 gEaERqlrllFeeA~-------k~--qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnR- 415 (1080)
T KOG0732|consen 346 GEAERQLRLLFEEAQ-------KT--QPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNR- 415 (1080)
T ss_pred CcHHHHHHHHHHHHh-------cc--CceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCC-
Confidence 444456665555442 22 589999999996632 334555555554332 155555555
Q ss_pred eeEeeccccCCCCCCChhhhh--hc-ccccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHc
Q psy1686 215 VTKIRGTAYSSPHGIPIDLLD--RM-VIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIA 271 (448)
Q Consensus 215 i~lI~~Ttenp~~~Ip~~lLS--R~-~ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~a 271 (448)
+-.+-++|+- |+ ..|+|.--+.++=.+||.++- +...-+.+|++..
T Consensus 416 -----------pda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t 470 (1080)
T KOG0732|consen 416 -----------PDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEET 470 (1080)
T ss_pred -----------ccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhc
Confidence 4456566633 22 256665555555567777543 8888899999986
No 268
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=80.47 E-value=11 Score=29.15 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHH
Q psy1686 246 QDEEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 246 s~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~ 307 (448)
...-++.|++... ++.|+..++++.+ -.+...+...|...|...+++.|+.+||..++
T Consensus 4 P~a~vkri~k~~~~~~~vs~ea~~~i~~a~----e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 4 PLARVKRIMKSDPDVMRVSKEAVEAIAKAA----EEFIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp -HHHHHHHHHHTSTTSEE-HHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred ChHHHHHHhccCCCccchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 3346777877542 8999999998887 35667777778777877788899999998764
No 269
>KOG0729|consensus
Probab=80.39 E-value=7.8 Score=39.60 Aligned_cols=121 Identities=18% Similarity=0.203 Sum_probs=59.5
Q ss_pred CeEEEEeccCCCC-----------HHHHHHHHHhhhh--cCCC----eEEEEecCceeEe------eccccCCCCCCChh
Q psy1686 176 PGVLFIDEVHMLD-----------IECFSFLNRALES--EMSP----VVITATNRGVTKI------RGTAYSSPHGIPID 232 (448)
Q Consensus 176 ~~VLfIDEVH~L~-----------~~~f~~Llk~lEe--~~~p----i~IlaT~~~i~lI------~~Ttenp~~~Ip~~ 232 (448)
-.|+|.|||+.+. .+.|--.+..+-. -+-| .+.||||+--++= |..+-.--|++ ++
T Consensus 271 aciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~l-pd 349 (435)
T KOG0729|consen 271 ACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGL-PD 349 (435)
T ss_pred eEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccC-Cc
Confidence 3899999999772 3455444444332 2333 7889999833221 11122223333 34
Q ss_pred hhhhcccccCCCCCHHHHHHHHHHhcCCHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHH
Q psy1686 233 LLDRMVIIPTQPYQDEEIQAILKIRLMQTDG-LRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 233 lLSR~~ii~~~pys~~eI~~IL~~Rai~dea-l~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~ 307 (448)
|-.|..||+...-+-. ++.+. +++|++++-+...-.--+.-.-|.++|...-++..|..|.-++.
T Consensus 350 legrt~i~kihaksms----------verdir~ellarlcpnstgaeirsvcteagmfairarrk~atekdfl~av 415 (435)
T KOG0729|consen 350 LEGRTHIFKIHAKSMS----------VERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLDAV 415 (435)
T ss_pred ccccceeEEEeccccc----------cccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHH
Confidence 4455544443322211 22222 67788886333222222333456666653334456665554443
No 270
>KOG0478|consensus
Probab=80.07 E-value=17 Score=41.29 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=25.3
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhcC
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESEM 203 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~~ 203 (448)
||-+|||++-++-...+.|+..+|...
T Consensus 528 GiCCIDEFDKM~dStrSvLhEvMEQQT 554 (804)
T KOG0478|consen 528 GICCIDEFDKMSDSTRSVLHEVMEQQT 554 (804)
T ss_pred ceEEchhhhhhhHHHHHHHHHHHHHhh
Confidence 899999999999999999999999865
No 271
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=79.69 E-value=17 Score=36.18 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=53.4
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhcCC-C--eEEEEecCceeEeeccccCCCC-----CCChhhhhhcc--cccCCC
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESEMS-P--VVITATNRGVTKIRGTAYSSPH-----GIPIDLLDRMV--IIPTQP 244 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~-p--i~IlaT~~~i~lI~~Ttenp~~-----~Ip~~lLSR~~--ii~~~p 244 (448)
.+-|+||||.+|++++..-.+++++.-.+. | +||++.+..+. ..+- ++.+. .....+|.+.. -|.+++
T Consensus 172 ~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l-~~ai-~~~~~~~~~~~~~~~yLeKiiq~~~~lP~ 249 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEIL-EKAI-EKNYGEGFDEIDGREYLEKIIQVPFSLPP 249 (325)
T ss_pred ceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHH-HHHH-HhhcCcccccccHHHHHHhhcCeEEEeCC
Confidence 468999999999998876666666655443 2 77777776431 1111 11111 24578899985 688899
Q ss_pred CCHHHHHHHHH
Q psy1686 245 YQDEEIQAILK 255 (448)
Q Consensus 245 ys~~eI~~IL~ 255 (448)
.+..++...+.
T Consensus 250 ~~~~~~~~~~~ 260 (325)
T PF07693_consen 250 PSPSDLERYLN 260 (325)
T ss_pred CCHHHHHHHHH
Confidence 99999888876
No 272
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=78.07 E-value=9.4 Score=32.42 Aligned_cols=50 Identities=16% Similarity=0.235 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIAL--DTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 i~deal~~La~~a~--~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+++++..+|-.... +=|+|-...+|..|-.+|.-++...|+.+||.++++
T Consensus 43 l~~~~~~~l~~~~~~~~lS~R~~~rilrvARTIADL~~~~~I~~~hi~EAl~ 94 (96)
T PF13335_consen 43 LSSEAKKLLEQAAEKLNLSARGYHRILRVARTIADLEGSERITREHIAEALS 94 (96)
T ss_pred CCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHhHcCCCCCCHHHHHHHHh
Confidence 55555554444431 349999999999999898877888999999999885
No 273
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=77.51 E-value=2.1 Score=39.79 Aligned_cols=27 Identities=41% Similarity=0.475 Sum_probs=24.1
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhc
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESE 202 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~ 202 (448)
.|.||||||+.|..+.|..|++++|+.
T Consensus 94 ~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~ 120 (168)
T PF00158_consen 94 GGTLFLDEIEDLPPELQAKLLRVLEEG 120 (168)
T ss_dssp TSEEEEETGGGS-HHHHHHHHHHHHHS
T ss_pred ceEEeecchhhhHHHHHHHHHHHHhhc
Confidence 489999999999999999999999964
No 274
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=77.02 E-value=15 Score=29.78 Aligned_cols=56 Identities=25% Similarity=0.194 Sum_probs=45.3
Q ss_pred HHHHHHHhc---CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 250 IQAILKIRL---MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 250 I~~IL~~Ra---i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
+.+||+.-. .+++|++.|+++. .||...+...+..+++..|+..++..||..++.-
T Consensus 12 Vaqil~~~Gf~~~~~sale~ltdi~----~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~ 70 (77)
T smart00576 12 VAQILESAGFDSFQESALETLTDIL----QSYIQELGRTAHSYAELAGRTEPNLGDVVLALEN 70 (77)
T ss_pred HHHHHHHcCccccCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 566776322 9999999999998 6899999999988887667788999999988763
No 275
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=75.12 E-value=14 Score=31.41 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
++.+|.+.+.+.. -+++.++.+.|..+|...+++.|+.+||+-++..
T Consensus 37 vs~~A~~~l~~~~----e~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~~ 83 (91)
T COG2036 37 VSSSAIEELQEAL----EEYLEEIAEDAVELAEHAKRKTVKAEDIKLALKR 83 (91)
T ss_pred hhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHH
Confidence 9999999998887 4799999999999998778899999999988864
No 276
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=74.66 E-value=13 Score=33.48 Aligned_cols=60 Identities=25% Similarity=0.272 Sum_probs=46.4
Q ss_pred HHHHHHHHhc---CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhcc
Q psy1686 249 EIQAILKIRL---MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLD 312 (448)
Q Consensus 249 eI~~IL~~Ra---i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~D 312 (448)
-|..||+.-. +++.+...|.+++ -||.-.+|+.|..+|...++..|+.+||+-+.+..++
T Consensus 17 ~i~~iL~~~Gv~~yeprVv~qLLEfa----yRYt~~vL~DA~~ya~hA~~~~i~~~DVrLAi~~r~~ 79 (129)
T PF02291_consen 17 VIHLILKSMGVTEYEPRVVNQLLEFA----YRYTSDVLEDAQVYADHAGRSTIDADDVRLAIQSRLD 79 (129)
T ss_dssp HHHHHHHHTT---B-THHHHHHHHHH----HHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHHHT--
T ss_pred HHHHHHHHcCCcccCHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHh
Confidence 3677887433 9999999999998 6999999999999987667789999999999986443
No 277
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=74.63 E-value=23 Score=28.06 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHH
Q psy1686 246 QDEEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 246 s~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~ 307 (448)
+.+-++.+.+ ++ +++++...|++.. + -++.++++.|..++...+++.++.+||..++
T Consensus 4 p~~~i~ria~-~~Gi~ris~~a~~~l~~~~-e---~rl~~i~~~A~k~~~hakRktlt~~DI~~Al 64 (65)
T smart00803 4 PKETIKDVAE-SLGIGNLSDEAAKLLAEDV-E---YRIKEIVQEALKFMRHSKRTTLTTSDIDSAL 64 (65)
T ss_pred CHHHHHHHHH-HCCCccccHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHhCCCeecHHHHHHHh
Confidence 4456777777 55 9999999888876 2 3566778888877765577889999998765
No 278
>PRK09183 transposase/IS protein; Provisional
Probab=74.08 E-value=6.9 Score=38.80 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=16.4
Q ss_pred CeEEEEeccCCC--CHHHHHHHHHhh
Q psy1686 176 PGVLFIDEVHML--DIECFSFLNRAL 199 (448)
Q Consensus 176 ~~VLfIDEVH~L--~~~~f~~Llk~l 199 (448)
+.+++|||+++. +.+..+.|...+
T Consensus 165 ~dlLiiDdlg~~~~~~~~~~~lf~li 190 (259)
T PRK09183 165 PRLLIIDEIGYLPFSQEEANLFFQVI 190 (259)
T ss_pred CCEEEEcccccCCCChHHHHHHHHHH
Confidence 589999999985 555544444444
No 279
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=73.79 E-value=5.3 Score=38.88 Aligned_cols=38 Identities=18% Similarity=0.055 Sum_probs=21.0
Q ss_pred CeEEEEeccCC----CCHHH-HHHHHHhhhhcCCCeEEEEecC
Q psy1686 176 PGVLFIDEVHM----LDIEC-FSFLNRALESEMSPVVITATNR 213 (448)
Q Consensus 176 ~~VLfIDEVH~----L~~~~-f~~Llk~lEe~~~pi~IlaT~~ 213 (448)
+.++++||.-+ ++... ...+++.+-+...+.+|++|-.
T Consensus 111 ~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~ 153 (222)
T cd03287 111 RSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHY 153 (222)
T ss_pred CeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEccc
Confidence 58999999743 33322 2334444443345666666654
No 280
>PLN00035 histone H4; Provisional
Probab=73.77 E-value=22 Score=31.01 Aligned_cols=61 Identities=8% Similarity=0.041 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 244 PYQDEEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 244 pys~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
.++...|..+++ |+ |++++.+.+.+.. + -++..++..|..+++..+++.|+.+||.-++..
T Consensus 29 ~ipk~~IrRLAR-r~GvkRIS~~ay~elr~vl-e---~~l~~I~~dav~ya~HA~RKTV~~~DV~~Alkr 93 (103)
T PLN00035 29 GITKPAIRRLAR-RGGVKRISGLIYEETRGVL-K---IFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 93 (103)
T ss_pred cCCHHHHHHHHH-HcCcccchHHHHHHHHHHH-H---HHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence 355567777777 66 9999988887775 2 366677777887877667889999999887764
No 281
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=73.65 E-value=7.8 Score=40.99 Aligned_cols=67 Identities=18% Similarity=0.149 Sum_probs=46.1
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQA 252 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~ 252 (448)
+..+|+||||++ ++-+.+|....+.....++|..++. -..+-++...|--|...+.+.|+|..|...
T Consensus 95 ~~yifLDEIq~v-~~W~~~lk~l~d~~~~~v~itgsss---------~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 95 KSYIFLDEIQNV-PDWERALKYLYDRGNLDVLITGSSS---------SLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred CceEEEecccCc-hhHHHHHHHHHccccceEEEECCch---------hhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 468999999997 6677777777776544344433332 111333455677788899999999999854
No 282
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=73.60 E-value=7.8 Score=37.28 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=21.0
Q ss_pred CeEEEEecc----CCCCHHH-HHHHHHhhhhcCCCeEEEEecC
Q psy1686 176 PGVLFIDEV----HMLDIEC-FSFLNRALESEMSPVVITATNR 213 (448)
Q Consensus 176 ~~VLfIDEV----H~L~~~~-f~~Llk~lEe~~~pi~IlaT~~ 213 (448)
+.++++||. +.++... ...+++.+.+.....+|++|-.
T Consensus 110 ~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~ 152 (216)
T cd03284 110 RSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHY 152 (216)
T ss_pred CeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCc
Confidence 689999995 5555433 3445555544323344445443
No 283
>KOG0736|consensus
Probab=72.90 E-value=57 Score=37.89 Aligned_cols=85 Identities=25% Similarity=0.425 Sum_probs=50.8
Q ss_pred cCeEEEEeccCCCCH--------HHHHHHHHhh--hhcCC---C-eEEEEecCceeEeeccccCCCCCCChhhhhhcc-c
Q psy1686 175 VPGVLFIDEVHMLDI--------ECFSFLNRAL--ESEMS---P-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV-I 239 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~--------~~f~~Llk~l--Ee~~~---p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~-i 239 (448)
.|.|+|+=.++-|.. ..+.++.-.+ |++.. + +||.+|+. .-.+|+++++-+. .
T Consensus 490 ~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s------------~~~lp~~i~~~f~~e 557 (953)
T KOG0736|consen 490 SPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSS------------IEDLPADIQSLFLHE 557 (953)
T ss_pred CceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccc------------cccCCHHHHHhhhhh
Confidence 478999877777743 2223333323 33331 2 33333332 4459999998875 8
Q ss_pred ccCCCCCHHHHHHHHHHhc----CCHHH-HHHHHHHc
Q psy1686 240 IPTQPYQDEEIQAILKIRL----MQTDG-LRVLTKIA 271 (448)
Q Consensus 240 i~~~pys~~eI~~IL~~Ra----i~dea-l~~La~~a 271 (448)
|++..++++|=.+||+.-. ++++. +..+++..
T Consensus 558 i~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t 594 (953)
T KOG0736|consen 558 IEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKT 594 (953)
T ss_pred ccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhc
Confidence 9999999999888887433 44433 34445443
No 284
>KOG2170|consensus
Probab=72.62 E-value=9.7 Score=39.36 Aligned_cols=58 Identities=19% Similarity=0.251 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCC--------CeEEEEecCc
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMS--------PVVITATNRG 214 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~--------pi~IlaT~~~ 214 (448)
++-|+++.+.+..-...- .+.+++.||++-|.+..++.|-..++.++. -+||+-+|.+
T Consensus 160 e~Yk~eL~~~v~~~v~~C----~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~g 225 (344)
T KOG2170|consen 160 EDYKEELKNRVRGTVQAC----QRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAG 225 (344)
T ss_pred HHHHHHHHHHHHHHHHhc----CCceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCCc
Confidence 444555554443333222 358899999999999999999999997652 1777777764
No 285
>PF09077 Phage-MuB_C: Mu B transposition protein, C terminal ; InterPro: IPR009084 Bacteriophage Mu can integrate into the host bacterial genome and replicate via transposition. Mu requires the activity of four proteins for DNA transposition. Two of these proteins are the phage-encoded A and B transposition proteins, while the other two are host-specified accessory factors HU and IHF. These four proteins can form nucleoprotein complexes (transposomes), which enable strand transfer. The stable protein-DNA intermediate is subsequently disassembled prior to DNA replication by host proteins. The Mu B transposition protein is an ATP-dependent, DNA-binding protein required for target capture and immunity, as well as for activating transpososome function []. The C-terminal domain of the B transposition protein is believed to be involved in both DNA-binding and protein-protein contacts with the Mu A transposition protein. The structure of the C-terminal domain consists of four helices in an irregular array [].; GO: 0003677 DNA binding, 0006313 transposition, DNA-mediated; PDB: 1F6V_A.
Probab=72.59 E-value=2.4 Score=35.04 Aligned_cols=66 Identities=20% Similarity=0.279 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHHHhcC-CHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 242 TQPYQDEEIQAILKIRLM-QTDGLRVLTKIAL-DTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 242 ~~pys~~eI~~IL~~Rai-~deal~~La~~a~-~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++.-+.+|+..+++--.| +++++.++..++. .|.+|.--.+|..|..+|..++ ..|+.++|+.+++
T Consensus 9 i~k~~~~Di~Ai~~AWgI~d~~~~~~l~~I~~k~GaLR~l~ktLrlA~m~A~g~g-~~i~~~~i~~A~~ 76 (78)
T PF09077_consen 9 IKKPKKADIKAIAKAWGITDKEERKLLQSIAEKPGALRQLTKTLRLAAMFAKGEG-EAITADHIRAAWK 76 (78)
T ss_dssp -SS-SGGGTTHHHHSSSSSSSHHHHHHHTTSSS-S-HHHHHHHHGGGT-TT-TTS---SSHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhCCCCHHHHHHHHHHcccccHHHHHHHHHHHHHHHhccCC-CcCCHHHHHHHHH
Confidence 355566788888761114 7788999998873 5699999999999998886443 3599999998864
No 286
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=72.56 E-value=19 Score=38.55 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=44.7
Q ss_pred CeEEEEeccCCCC---H-----HHHHHHHHhhhhcCCCeEEEEecCceeEeeccc---cCCCCCC--Chhhhhhc-----
Q psy1686 176 PGVLFIDEVHMLD---I-----ECFSFLNRALESEMSPVVITATNRGVTKIRGTA---YSSPHGI--PIDLLDRM----- 237 (448)
Q Consensus 176 ~~VLfIDEVH~L~---~-----~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Tt---enp~~~I--p~~lLSR~----- 237 (448)
.-+++|||+-.|- . ..++.|+..+.+-....+ .+-.+++++|. +.+..++ .++|-+|.
T Consensus 240 GLlI~lDE~e~l~kl~~~~~R~~~ye~lr~lidd~~~G~~----~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL~~~~~ 315 (416)
T PF10923_consen 240 GLLILLDELENLYKLRNDQAREKNYEALRQLIDDIDQGRA----PGLYFVFAGTPEFFEDGRRGVYSYEALAQRLAEEFF 315 (416)
T ss_pred ceEEEEechHHHHhcCChHHHHHHHHHHHHHHHHHhcCCC----CceEEEEeeCHHHhhCccccccccHHHHHHHhcccc
Confidence 3577799998771 1 347777777777543211 01112334442 2333333 24555543
Q ss_pred ----------ccccCCCCCHHHHHHHHH
Q psy1686 238 ----------VIIPTQPYQDEEIQAILK 255 (448)
Q Consensus 238 ----------~ii~~~pys~~eI~~IL~ 255 (448)
.+++++|++.+|+..++.
T Consensus 316 ~~~~~~n~~~pvIrL~~l~~eel~~l~~ 343 (416)
T PF10923_consen 316 ADDGFDNLRAPVIRLQPLTPEELLELLE 343 (416)
T ss_pred ccccccCccCceecCCCCCHHHHHHHHH
Confidence 378899999999998876
No 287
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=72.52 E-value=3.4 Score=37.20 Aligned_cols=55 Identities=18% Similarity=0.164 Sum_probs=27.0
Q ss_pred CCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCC
Q psy1686 150 EITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMS 204 (448)
Q Consensus 150 eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~ 204 (448)
...++.++.+...+..++......-.|-|++||++|.++...+.+|...++....
T Consensus 125 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~vlviDd~d~~~~~~~~~l~~l~~~~~~ 179 (185)
T PF13191_consen 125 LDPDSLEDRLEELLREILRELAARRKPLVLVIDDLDWADPASLDLLRALARRLQN 179 (185)
T ss_dssp --HHHHH----HHHHHHHTTS-SE---EEEEEETTTHHHTTHHHHHHH-------
T ss_pred CCHHHHHhHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcHHHHHHHhccccccc
Confidence 3345555444455555543333332358999999999998888888777776544
No 288
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=72.19 E-value=7.4 Score=37.64 Aligned_cols=46 Identities=9% Similarity=0.169 Sum_probs=27.9
Q ss_pred CCcccccCCCCCcch-hh------hhhhccCccccccCCCccCCCCccccCCCcccceeeeeeccchh
Q psy1686 68 WPCVMCGRGKNPQKV-KK------ISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLH 128 (448)
Q Consensus 68 pf~~~~G~ei~GKtt-~~------I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~~~vtLh 128 (448)
.++.++||-.+|||| -+ +.+..| -|+||....+.-..++...+.+.
T Consensus 31 ~~~~l~G~n~~GKstll~~i~~~~~la~~g---------------~~vpa~~~~~~~~~~il~~~~l~ 83 (222)
T cd03285 31 RFLIITGPNMGGKSTYIRQIGVIVLMAQIG---------------CFVPCDSADIPIVDCILARVGAS 83 (222)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHHhC---------------CCcCcccEEEeccceeEeeeccc
Confidence 467888986558877 33 333333 37888777666555555444443
No 289
>PRK07952 DNA replication protein DnaC; Validated
Probab=71.16 E-value=9.1 Score=37.90 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=17.4
Q ss_pred CeEEEEeccCCCCHH--HHHHHHHhhhh
Q psy1686 176 PGVLFIDEVHMLDIE--CFSFLNRALES 201 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~--~f~~Llk~lEe 201 (448)
..+|+|||++..... ....|+..++.
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~ 190 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDR 190 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 489999999987432 33455555554
No 290
>PRK04296 thymidine kinase; Provisional
Probab=70.04 E-value=9 Score=35.98 Aligned_cols=32 Identities=31% Similarity=0.399 Sum_probs=23.5
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeE
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVV 207 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~ 207 (448)
+.+++|||+|.|+.++...|.+.+.+.-.+++
T Consensus 79 ~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi 110 (190)
T PRK04296 79 IDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVI 110 (190)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHHcCCeEE
Confidence 48999999999998877767777654333333
No 291
>PF12846 AAA_10: AAA-like domain
Probab=69.88 E-value=4.3 Score=39.25 Aligned_cols=67 Identities=22% Similarity=0.234 Sum_probs=40.0
Q ss_pred ccCeEEEEeccCCCCHH--HHHHHHHhhhhcCCC--eEEEEecCceeEeeccccCCCCCCC-----hhhhhhcccccCCC
Q psy1686 174 IVPGVLFIDEVHMLDIE--CFSFLNRALESEMSP--VVITATNRGVTKIRGTAYSSPHGIP-----IDLLDRMVIIPTQP 244 (448)
Q Consensus 174 i~~~VLfIDEVH~L~~~--~f~~Llk~lEe~~~p--i~IlaT~~~i~lI~~Ttenp~~~Ip-----~~lLSR~~ii~~~p 244 (448)
-.+.++||||+|.+... ....+.+.+.+.-.. .++++|.. +-.++ .++++-|..+-+-+
T Consensus 219 ~~~~~i~iDEa~~~~~~~~~~~~~~~~~~~~Rk~g~~~~l~tQ~------------~~~l~~~~~~~~i~~n~~~~i~~~ 286 (304)
T PF12846_consen 219 GRPKIIVIDEAHNFLSNPSGAEFLDELLREGRKYGVGLILATQS------------PSDLPKSPIEDAILANCNTKIIFR 286 (304)
T ss_pred CceEEEEeCCccccccccchhhhhhHHHHHHHhcCCEEEEeeCC------------HHHHhccchHHHHHHhCCcEEEec
Confidence 36799999999999654 333444444432222 44455554 33344 67888887655566
Q ss_pred CCHHHHHH
Q psy1686 245 YQDEEIQA 252 (448)
Q Consensus 245 ys~~eI~~ 252 (448)
.+..+..+
T Consensus 287 ~~~~~~~~ 294 (304)
T PF12846_consen 287 LEDSDDAE 294 (304)
T ss_pred CChHHHHH
Confidence 66665555
No 292
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=69.86 E-value=9.8 Score=33.51 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=28.7
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC--CCeEEEEecC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM--SPVVITATNR 213 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~--~pi~IlaT~~ 213 (448)
.+.|||+||++|+.+.|..|...++... ...+|+.+..
T Consensus 70 ~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 70 GGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp TSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred CCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 4789999999999999999999998642 2355544444
No 293
>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis]
Probab=69.15 E-value=26 Score=38.77 Aligned_cols=202 Identities=16% Similarity=0.172 Sum_probs=110.6
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhc---CC------C---eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCC
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESE---MS------P---VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQP 244 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~---~~------p---i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~p 244 (448)
-|++-||=.+........+.|+.+-. |. | +.-|.---|-..+.--|.-||..|..+++.+.-.. .|
T Consensus 376 vvlva~~~~~~~~a~~~V~~Ra~~ai~gvpeETR~a~~DGtT~yLRPlPGaaRMYPETDIPpi~i~~~~l~~~~~~--~P 453 (631)
T COG2511 376 VVLVAGEEERAKRALEAVIERAKEAIEGVPEETRGALPDGTTVYLRPLPGAARMYPETDIPPIRIDEELLEKIKEN--LP 453 (631)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHHHHcCCCHhhccCCCCCCceeecCCCCccccCCcCCCCCcccCHHHHHHHhhh--CC
Confidence 56777777776665555555554422 11 1 11122112222222235668999999999766322 45
Q ss_pred CCHHHHHHHHHHhc----------CCHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhhhhCCC--cccHHHHHHHHHHhc
Q psy1686 245 YQDEEIQAILKIRL----------MQTDGLRVLTKIAL-DTSLRYAIQLITTASVVCRRRKAT--EICMEDIRKVYALFL 311 (448)
Q Consensus 245 ys~~eI~~IL~~Ra----------i~deal~~La~~a~-~Gd~R~AL~lLe~a~~~a~~~~~~--~It~e~V~~~~~lf~ 311 (448)
-..++-.+-+.... +++.-+++.-.++. +-+++.+-++|....-.-++++.. .++.++++.++.+..
T Consensus 454 e~~~ek~~r~~~eygLs~~LA~~~~~~~~~~~FEel~e~~v~p~~~A~~L~~~~~~L~reg~~i~~l~~~~i~~~~~~~~ 533 (631)
T COG2511 454 ELPEEKVERYVKEYGLSKELAEQLASDPRVDLFEELVEKGVDPTLIASTLVNTLPELRREGVEIDNLDDEHIEELLRLVS 533 (631)
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCccccCCHHHHHHHHHHHh
Confidence 55555544443222 33333444444453 338888888888765433333333 379999999999877
Q ss_pred chhHHHHHHHHHHhhhhhhhcccCCCCCcccccccccccCchhhHHHHHHHHhcchhhHHHhhhccccccccccC
Q psy1686 312 DEGRSTQYLREHQNEYMFDSTVTGGAGDTKMEVDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAG 386 (448)
Q Consensus 312 D~~~s~~~L~~~~~~~l~~~~~~~~~~~~~lE~e~~v~lp~g~v~k~ke~v~~vTLhdlD~~na~~~g~~~l~~~ 386 (448)
+.+-+-..+.+ -...|+.+- +...+...+-..+..+++.|+ ++++..+.-.-+|+.-+|-.+...++-|
T Consensus 534 ~g~iake~iee-~l~~l~~~p--~~~~~e~~~~~gL~~ls~eEv---e~iI~eii~~~~d~i~~rg~~a~g~lmg 602 (631)
T COG2511 534 EGKIAKEAIEE-ILKALAENP--GKDAAEIAEKLGLKELSEEEV---EKIIDEIIESNLDVIKERGMGAMGLLMG 602 (631)
T ss_pred cccchHHHHHH-HHHHHHhCC--CCCHHHHHHHhccccCCHHHH---HHHHHHHHHhhHHHHHHhchhhHHHHHH
Confidence 65433333321 111222211 111111234345667888765 5678888888999998887766554444
No 294
>PTZ00015 histone H4; Provisional
Probab=69.15 E-value=35 Score=29.70 Aligned_cols=61 Identities=7% Similarity=0.089 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 244 PYQDEEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 244 pys~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
.++...|+.|++ |+ |++++.+.+...- --++.+++..|..+|+..+++.|+.+||.-++..
T Consensus 30 gI~k~~IrRLar-r~GvkRIS~d~y~e~r~vl----e~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlKr 94 (102)
T PTZ00015 30 GITKGAIRRLAR-RGGVKRISGDIYEEVRGVL----KAFLENVVRDSTAYTEYARRKTVTAMDVVYALKR 94 (102)
T ss_pred CCCHHHHHHHHH-HcCCccchHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHh
Confidence 344556777777 66 8888887776654 1356677777777776567789999999887754
No 295
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=69.13 E-value=8.6 Score=31.55 Aligned_cols=22 Identities=32% Similarity=0.243 Sum_probs=17.4
Q ss_pred CeEEEEeccCCCCHHHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNR 197 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk 197 (448)
+.|+||||++++.......+..
T Consensus 79 ~~viiiDei~~~~~~~~~~~~~ 100 (148)
T smart00382 79 PDVLILDEITSLLDAEQEALLL 100 (148)
T ss_pred CCEEEEECCcccCCHHHHHHHH
Confidence 5899999999998766665543
No 296
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=69.12 E-value=6.4 Score=34.99 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=17.2
Q ss_pred CeEEEEeccCCCCHHH-HHHHHH
Q psy1686 176 PGVLFIDEVHMLDIEC-FSFLNR 197 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~-f~~Llk 197 (448)
..++++||+|+..... +..+.+
T Consensus 147 ~~~vI~DEaH~~~~~~~~~~i~~ 169 (184)
T PF04851_consen 147 FDLVIIDEAHHYPSDSSYREIIE 169 (184)
T ss_dssp ESEEEEETGGCTHHHHHHHHHHH
T ss_pred CCEEEEehhhhcCCHHHHHHHHc
Confidence 4899999999997766 555555
No 297
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=68.52 E-value=35 Score=28.64 Aligned_cols=60 Identities=12% Similarity=0.120 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 245 YQDEEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 245 ys~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
++...|..+.+ |+ |++++.+.+.+.- --++.+++..|..+++..+++.|+.+||.-++..
T Consensus 14 i~k~~I~RLar-r~GvkRIS~d~y~e~~~~l----~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr 77 (85)
T cd00076 14 ITKPAIRRLAR-RGGVKRISGGVYDEVRNVL----KSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKR 77 (85)
T ss_pred CCHHHHHHHHH-HcCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence 44556777777 55 8888888777664 2366677778887877667889999999877753
No 298
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=68.09 E-value=8.9 Score=35.68 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=20.8
Q ss_pred CeEEEEeccCC-CCHHH-H---HHHHHhhhhcCCCeEEEEecC
Q psy1686 176 PGVLFIDEVHM-LDIEC-F---SFLNRALESEMSPVVITATNR 213 (448)
Q Consensus 176 ~~VLfIDEVH~-L~~~~-f---~~Llk~lEe~~~pi~IlaT~~ 213 (448)
|.++++||.-. ++... . ..+.+.+.+...+.+|++|-.
T Consensus 79 ~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~ 121 (185)
T smart00534 79 NSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHY 121 (185)
T ss_pred CeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecH
Confidence 68999999854 45442 2 233333332224566666654
No 299
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=65.47 E-value=5.3 Score=32.96 Aligned_cols=20 Identities=35% Similarity=0.507 Sum_probs=16.0
Q ss_pred CeEEEEeccCCCCHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFL 195 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~L 195 (448)
.++++|||+|.+........
T Consensus 104 ~~~iiiDE~h~~~~~~~~~~ 123 (144)
T cd00046 104 LDLLILDEAHRLLNQGFGLL 123 (144)
T ss_pred CCEEEEeCHHHHhhcchHHH
Confidence 48899999999987665554
No 300
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=64.73 E-value=29 Score=37.02 Aligned_cols=122 Identities=25% Similarity=0.274 Sum_probs=72.8
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecC----ceeEeeccccC-----CCCCCChhhhhhcc--cccCCCC
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNR----GVTKIRGTAYS-----SPHGIPIDLLDRMV--IIPTQPY 245 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~----~i~lI~~Tten-----p~~~Ip~~lLSR~~--ii~~~py 245 (448)
|-+|+|||--+++..|--|+|.+.|-.---+ .++. .+-.|.+|-.| -.-+.-.+|.-|.- -+++.|+
T Consensus 295 GTVlLDeIgEmSp~lQaKLLRFL~DGtFRRV--Gee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpL 372 (511)
T COG3283 295 GTVLLDEIGEMSPRLQAKLLRFLNDGTFRRV--GEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPL 372 (511)
T ss_pred CeEEeehhhhcCHHHHHHHHHHhcCCceeec--CCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCcc
Confidence 6789999999999999999999998542100 0000 11233333222 01112234444442 3334444
Q ss_pred CHH--HH--------HHHHHH----hc-CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHH
Q psy1686 246 QDE--EI--------QAILKI----RL-MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDI 303 (448)
Q Consensus 246 s~~--eI--------~~IL~~----Ra-i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V 303 (448)
-+. +| .++-.. ++ ++++.+.+|.++.--|+.|.--|.+.+|....+ +..++.+++
T Consensus 373 Rer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~E---g~~l~i~~i 442 (511)
T COG3283 373 RERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTLLE---GYELRIEDI 442 (511)
T ss_pred ccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHHHhc---cCccchhhc
Confidence 321 22 122111 11 999999999999889999999999999976653 235555555
No 301
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=62.93 E-value=23 Score=33.30 Aligned_cols=19 Identities=16% Similarity=0.048 Sum_probs=13.4
Q ss_pred cCeEEEEeccCC-CCHHHHH
Q psy1686 175 VPGVLFIDEVHM-LDIECFS 193 (448)
Q Consensus 175 ~~~VLfIDEVH~-L~~~~f~ 193 (448)
.+.++++||.=. ++.....
T Consensus 108 ~~~llllDEp~~gld~~~~~ 127 (202)
T cd03243 108 PRSLVLIDELGRGTSTAEGL 127 (202)
T ss_pred CCeEEEEecCCCCCCHHHHH
Confidence 369999999955 6664333
No 302
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=62.81 E-value=9.2 Score=43.59 Aligned_cols=25 Identities=32% Similarity=0.248 Sum_probs=23.0
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhh
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALE 200 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lE 200 (448)
.++++|||++|++...++.|++++.
T Consensus 417 ~~llIvDEaSMvd~~~~~~Ll~~~~ 441 (720)
T TIGR01448 417 CDLLIVDESSMMDTWLALSLLAALP 441 (720)
T ss_pred CCEEEEeccccCCHHHHHHHHHhCC
Confidence 5899999999999999999999875
No 303
>KOG0743|consensus
Probab=62.28 E-value=45 Score=36.13 Aligned_cols=125 Identities=18% Similarity=0.171 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCC------------------CHHHHHHHHHhhhhcCCC-----eEEE
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHML------------------DIECFSFLNRALESEMSP-----VVIT 209 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L------------------~~~~f~~Llk~lEe~~~p-----i~Il 209 (448)
+|+|..+...- + +-|+.|.+|+.= ++-.++=||.++...-+- ++||
T Consensus 275 ~dLr~LL~~t~------~-----kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivF 343 (457)
T KOG0743|consen 275 SDLRHLLLATP------N-----KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVF 343 (457)
T ss_pred HHHHHHHHhCC------C-----CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEE
Confidence 67888776541 2 378888888764 112355677777754432 6666
Q ss_pred EecCceeEeeccccCCCCCCChhhhh--hc-ccccCCCCCHHHHHHHHHHhc--CCHHHHHHHHHHcCCCCHHHHHHHHH
Q psy1686 210 ATNRGVTKIRGTAYSSPHGIPIDLLD--RM-VIIPTQPYQDEEIQAILKIRL--MQTDGLRVLTKIALDTSLRYAIQLIT 284 (448)
Q Consensus 210 aT~~~i~lI~~Ttenp~~~Ip~~lLS--R~-~ii~~~pys~~eI~~IL~~Ra--i~deal~~La~~a~~Gd~R~AL~lLe 284 (448)
.||- .-++-|+|+- |+ ..|.+--.+++..+...+ +- +++ +-+-+=. ++
T Consensus 344 TTNh------------~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~-nYL~~~~-------------~h~L~~e-ie 396 (457)
T KOG0743|consen 344 TTNH------------KEKLDPALLRPGRMDMHIYMGYCTFEAFKTLAS-NYLGIEE-------------DHRLFDE-IE 396 (457)
T ss_pred ecCC------------hhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHH-HhcCCCC-------------CcchhHH-HH
Confidence 6665 6678889988 55 367777777776666555 22 321 1111101 11
Q ss_pred HHHHHhhhhCCCcccHHHHHHHHHHhc-chhHHHHHHH
Q psy1686 285 TASVVCRRRKATEICMEDIRKVYALFL-DEGRSTQYLR 321 (448)
Q Consensus 285 ~a~~~a~~~~~~~It~e~V~~~~~lf~-D~~~s~~~L~ 321 (448)
. ...+..+|+.+|.+.+-.-- |...+++.|-
T Consensus 397 ~------l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv 428 (457)
T KOG0743|consen 397 R------LIEETEVTPAQVAEELMKNKNDADVALKGLV 428 (457)
T ss_pred H------HhhcCccCHHHHHHHHhhccccHHHHHHHHH
Confidence 1 11234689999988775433 5666666553
No 304
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=59.97 E-value=5.3 Score=44.65 Aligned_cols=40 Identities=15% Similarity=0.292 Sum_probs=31.7
Q ss_pred ccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch
Q psy1686 36 PRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV 82 (448)
Q Consensus 36 p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt 82 (448)
|...+++++||+++.+ .+..++.+++ + +.++|+|..|||+
T Consensus 13 ~~~~~~~viG~~~a~~---~l~~a~~~~~--~--~ll~G~pG~GKT~ 52 (608)
T TIGR00764 13 PERLIDQVIGQEEAVE---IIKKAAKQKR--N--VLLIGEPGVGKSM 52 (608)
T ss_pred chhhHhhccCHHHHHH---HHHHHHHcCC--C--EEEECCCCCCHHH
Confidence 5667899999999975 4788888774 4 8899998558876
No 305
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=59.24 E-value=7.2 Score=41.08 Aligned_cols=84 Identities=19% Similarity=0.399 Sum_probs=45.8
Q ss_pred eeeeeccchhhhhhhccccccchhhhcCCCCCC-----chHHHHHHHH---HHH------HHHHhCcccccCeEEEEecc
Q psy1686 119 KTVVHTVTLHEIDVINSRTHGFLALFAGDTGEI-----TPEVREQISA---KVT------EWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 119 kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI-----~~eiR~~I~~---~v~------~~~~~g~~~i~~~VLfIDEV 184 (448)
.|..++++.||+-..+.+++-+. +..|..+|| ++-.|-.+.- ... -++...-+-..|+++.||||
T Consensus 226 ne~i~~ts~~d~~~~s~~~h~l~-mk~~~~geI~ls~lSdg~Rt~~Alvadiarr~v~LNp~Lsd~la~~tpgivLiDeI 304 (440)
T COG3950 226 NENISSTSWNDLLIGSQRKHELF-MKHGNGGEIPLSELSDGPRTKFALVADIARRCVVLNPYLSDALAKLTPGIVLIDEI 304 (440)
T ss_pred hhhcccCchhhhhhhcccchHHH-HccCCCCccchhhcccchHHHHHHHHHHHHHHhhcChhhcchhhcCCCceEEeehh
Confidence 35566778888877777755321 222333333 3444532221 111 12222223335899999999
Q ss_pred CCC-CHHHHHHHHHhhhhcC
Q psy1686 185 HML-DIECFSFLNRALESEM 203 (448)
Q Consensus 185 H~L-~~~~f~~Llk~lEe~~ 203 (448)
+|+ ++.-|.-++..+++.+
T Consensus 305 dlflhP~WQQqi~qkL~saF 324 (440)
T COG3950 305 DLFLHPKWQQQINQKLLSAF 324 (440)
T ss_pred hhhcCHHHHHHHHHHHHhhc
Confidence 998 5566666666666443
No 306
>smart00417 H4 Histone H4.
Probab=58.80 E-value=50 Score=27.06 Aligned_cols=55 Identities=7% Similarity=0.082 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHH
Q psy1686 245 YQDEEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIR 304 (448)
Q Consensus 245 ys~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~ 304 (448)
++...|..+++ |+ +++++.+.+.+.-. -++.+++..|..+++..+.+.|+.+||.
T Consensus 14 I~k~~IrRLaR-r~GvkRIS~~~y~elr~vle----~~l~~I~rdav~~a~ha~RKTV~~~DV~ 72 (74)
T smart00417 14 ITKPAIRRLAR-RGGVKRISGLIYDETRNVLK----SFLENVVRDAVTYTEHARRKTVTAMDVV 72 (74)
T ss_pred CCHHHHHHHHH-HcCcchhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCcccHHHhe
Confidence 44446777777 55 88888877766651 3667777788878776677889999885
No 307
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=58.14 E-value=16 Score=35.75 Aligned_cols=38 Identities=21% Similarity=0.072 Sum_probs=21.5
Q ss_pred CeEEEEeccCCCCH-----HHHHHHHHhhhhcCCCeEEEEecC
Q psy1686 176 PGVLFIDEVHMLDI-----ECFSFLNRALESEMSPVVITATNR 213 (448)
Q Consensus 176 ~~VLfIDEVH~L~~-----~~f~~Llk~lEe~~~pi~IlaT~~ 213 (448)
+.+++|||+-+=+. ....++++.+.+...+.++++|-.
T Consensus 123 ~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~ 165 (235)
T PF00488_consen 123 KSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHF 165 (235)
T ss_dssp TEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-
T ss_pred ceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEecc
Confidence 47899999988642 334445555554333455556553
No 308
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=58.02 E-value=13 Score=44.03 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=29.2
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhh--hcC-CCeEEEEec
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALE--SEM-SPVVITATN 212 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lE--e~~-~pi~IlaT~ 212 (448)
.++|+|||||.++...+-+|.+.++ ... .|+++|.-|
T Consensus 594 ~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSAT 633 (1110)
T TIGR02562 594 SSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSAT 633 (1110)
T ss_pred CCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5889999999999999999999998 333 456654433
No 309
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=57.74 E-value=44 Score=26.78 Aligned_cols=48 Identities=17% Similarity=0.304 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
+++++-++|.++| + -+--+.+..|+.+|..+++..++..||+-.+..-
T Consensus 18 ld~~vee~Ll~la-d---dFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Ler~ 65 (68)
T PF03847_consen 18 LDPDVEELLLELA-D---DFVDDVVSFACRLAKHRKSSTLEVKDVQLHLERN 65 (68)
T ss_dssp --HHHHHHHHHHH-H---HHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-H---HHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHhh
Confidence 9999999999998 3 2555667778888887888899999998777643
No 310
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=57.61 E-value=35 Score=33.12 Aligned_cols=92 Identities=24% Similarity=0.210 Sum_probs=43.5
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILK 255 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~ 255 (448)
+.++++|+|... ..++.|...+-......-|+.|++. ..+....-..+..+++.+++.+|-.+.+.
T Consensus 102 ~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~------------~~v~~~~~~~~~~~~l~~L~~~ea~~L~~ 167 (287)
T PF00931_consen 102 RCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRD------------RSVAGSLGGTDKVIELEPLSEEEALELFK 167 (287)
T ss_dssp SEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESC------------GGGGTTHHSCEEEEECSS--HHHHHHHHH
T ss_pred cceeeeeeeccc--ccccccccccccccccccccccccc------------ccccccccccccccccccccccccccccc
Confidence 589999999864 2332233222221122222334441 11222221125689999999999999988
Q ss_pred Hhc---C------CHHHHHHHHHHcCCCCHHHHHHHH
Q psy1686 256 IRL---M------QTDGLRVLTKIALDTSLRYAIQLI 283 (448)
Q Consensus 256 ~Ra---i------~deal~~La~~a~~Gd~R~AL~lL 283 (448)
.++ - .++..+.|++.+ +|-+ .||.++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~c-~glP-Lal~~~ 202 (287)
T PF00931_consen 168 KRAGRKESESPEDLEDLAKEIVEKC-GGLP-LALKLI 202 (287)
T ss_dssp HHHTSHS----TTSCTHHHHHHHHT-TT-H-HHHHHH
T ss_pred ccccccccccccccccccccccccc-cccc-cccccc
Confidence 655 1 133445666776 5533 455443
No 311
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=57.48 E-value=20 Score=34.73 Aligned_cols=38 Identities=11% Similarity=0.073 Sum_probs=21.1
Q ss_pred CeEEEEeccCCC-CH----HHHHHHHHhhhhcCCCeEEEEecC
Q psy1686 176 PGVLFIDEVHML-DI----ECFSFLNRALESEMSPVVITATNR 213 (448)
Q Consensus 176 ~~VLfIDEVH~L-~~----~~f~~Llk~lEe~~~pi~IlaT~~ 213 (448)
+.+++|||+-+= +. .....+++.+.+...+.++++|-.
T Consensus 110 ~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~ 152 (218)
T cd03286 110 DSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHY 152 (218)
T ss_pred CeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEecc
Confidence 689999998652 22 223333344443334566666654
No 312
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=57.10 E-value=8.9 Score=40.99 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=15.5
Q ss_pred HHHHHhCcccccCeEEEEeccCCC
Q psy1686 164 TEWREEGKAEIVPGVLFIDEVHML 187 (448)
Q Consensus 164 ~~~~~~g~~~i~~~VLfIDEVH~L 187 (448)
.++++.|+ ..|+||||+|||
T Consensus 249 e~~~e~G~----dVlL~iDsItR~ 268 (416)
T PRK09376 249 KRLVEHGK----DVVILLDSITRL 268 (416)
T ss_pred HHHHHcCC----CEEEEEEChHHH
Confidence 44556664 589999999997
No 313
>PRK09694 helicase Cas3; Provisional
Probab=55.55 E-value=16 Score=42.71 Aligned_cols=27 Identities=33% Similarity=0.534 Sum_probs=21.3
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhh
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALES 201 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe 201 (448)
..+|++|||||.++.....+|.++++-
T Consensus 439 a~svvIiDEVHAyD~ym~~lL~~~L~~ 465 (878)
T PRK09694 439 GRSVLIVDEVHAYDAYMYGLLEAVLKA 465 (878)
T ss_pred ccCeEEEechhhCCHHHHHHHHHHHHH
Confidence 457999999999998776666666653
No 314
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=55.15 E-value=7.5 Score=43.77 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=31.6
Q ss_pred CCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch
Q psy1686 34 LEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV 82 (448)
Q Consensus 34 ~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt 82 (448)
..|+. +++++||+++.. .|..++.+++ ++.++|||..|||+
T Consensus 25 ~~~~~-~~~vigq~~a~~---~L~~~~~~~~----~~l~~G~~G~GKtt 65 (637)
T PRK13765 25 VPERL-IDQVIGQEHAVE---VIKKAAKQRR----HVMMIGSPGTGKSM 65 (637)
T ss_pred cCccc-HHHcCChHHHHH---HHHHHHHhCC----eEEEECCCCCcHHH
Confidence 34554 899999999975 4778888774 48899998558876
No 315
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=54.65 E-value=13 Score=35.16 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=38.6
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILK 255 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~ 255 (448)
..|++|||+-|++...+..|++..+....-++.+.....+--|++ . .+...+...... .-+|.++.+
T Consensus 94 ~~vliVDEasmv~~~~~~~ll~~~~~~~~klilvGD~~QL~pV~~---g---~~~~~l~~~~~~-------~~~L~~i~R 160 (196)
T PF13604_consen 94 KDVLIVDEASMVDSRQLARLLRLAKKSGAKLILVGDPNQLPPVGA---G---SPFADLQESGGI-------TVELTEIRR 160 (196)
T ss_dssp TSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEEEE-TTSHHHCST---T---CHHHHHCGCSTT-------EEEE---SC
T ss_pred ccEEEEecccccCHHHHHHHHHHHHhcCCEEEEECCcchhcCCcC---C---cHHHHHHhcCCC-------eEEeChhhc
Confidence 479999999999999999999999863333333333322211111 0 011222222210 112334433
Q ss_pred HhcCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy1686 256 IRLMQTDGLRVLTKIALDTSLRYAIQLITTAS 287 (448)
Q Consensus 256 ~Rai~deal~~La~~a~~Gd~R~AL~lLe~a~ 287 (448)
.=++..++....+. +|+...|+..|+...
T Consensus 161 --q~~~~~~~~~~~~~-~g~~~~al~~l~~~g 189 (196)
T PF13604_consen 161 --QKDPELREAAKAIR-EGDAEEALDALEDNG 189 (196)
T ss_dssp --CCCTHHHHHHHHHC-TT-------------
T ss_pred --CCChHHHHHHHHHH-cCCCccccccccccc
Confidence 12344445555556 888888888776543
No 316
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=54.60 E-value=13 Score=30.27 Aligned_cols=66 Identities=12% Similarity=0.244 Sum_probs=37.7
Q ss_pred ChhhhhhcccccCCCCCHHHHHHHHHHhcCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCc-ccHHHHHHHHH
Q psy1686 230 PIDLLDRMVIIPTQPYQDEEIQAILKIRLMQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATE-ICMEDIRKVYA 308 (448)
Q Consensus 230 p~~lLSR~~ii~~~pys~~eI~~IL~~Rai~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~-It~e~V~~~~~ 308 (448)
|++++.|.+--.|+.=+. | |+++|+.+++++- + -+.-..+.+|...+..++... |+.+|+++++.
T Consensus 1 p~~li~rll~~~f~~~~t---------k-Is~dal~l~~eyl-~---iFV~EAv~Ra~~~a~~e~~~~~le~e~LEki~p 66 (72)
T PF09415_consen 1 PPELIARLLHEHFKDDKT---------K-ISKDALKLSAEYL-R---IFVREAVARAAEQAEAEGDEGFLEVEHLEKILP 66 (72)
T ss_dssp -CHHHHHHHCTTSSSTT----------E-E-CCCHHHHHHHH-H---HHHHHHHHHHHHHHHHTT-SSEE-HHHHHHHCH
T ss_pred ChHHHHHHHHHHhcCCCC---------C-cCHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 566666665444432110 1 7778888888774 2 133334556666565566667 99999999886
Q ss_pred H
Q psy1686 309 L 309 (448)
Q Consensus 309 l 309 (448)
.
T Consensus 67 q 67 (72)
T PF09415_consen 67 Q 67 (72)
T ss_dssp C
T ss_pred H
Confidence 3
No 317
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=54.51 E-value=29 Score=33.19 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=19.7
Q ss_pred CeEEEEeccCC-CCH-HHH---HHHHHhhhhcCCCeEEEEecC
Q psy1686 176 PGVLFIDEVHM-LDI-ECF---SFLNRALESEMSPVVITATNR 213 (448)
Q Consensus 176 ~~VLfIDEVH~-L~~-~~f---~~Llk~lEe~~~pi~IlaT~~ 213 (448)
+.++++||.-+ ++. +.. ..+.+.+-+. .+.+|++|-.
T Consensus 109 ~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~-~~~~i~~TH~ 150 (204)
T cd03282 109 DSLVLIDELGRGTSSADGFAISLAILECLIKK-ESTVFFATHF 150 (204)
T ss_pred CcEEEeccccCCCCHHHHHHHHHHHHHHHHhc-CCEEEEECCh
Confidence 58999999744 444 222 2233333322 4566666653
No 318
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=54.37 E-value=13 Score=39.83 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhCcccccCeEEEEeccCCCCH
Q psy1686 158 QISAKVTEWREEGKAEIVPGVLFIDEVHMLDI 189 (448)
Q Consensus 158 ~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~ 189 (448)
.+.+...++.+.|+ ..|+||||+|+|.+
T Consensus 242 ~v~e~Ae~~~~~Gk----dVVLlIDEitR~ar 269 (415)
T TIGR00767 242 MVIEKAKRLVEHKK----DVVILLDSITRLAR 269 (415)
T ss_pred HHHHHHHHHHHcCC----CeEEEEEChhHHHH
Confidence 34444455666774 58999999999744
No 319
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=54.08 E-value=82 Score=25.18 Aligned_cols=56 Identities=27% Similarity=0.263 Sum_probs=43.1
Q ss_pred HHHHHHHhc---CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 250 IQAILKIRL---MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 250 I~~IL~~Ra---i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
+.++++... .++.|++.|+.+. .+|-.++-..+..+|+..++...+..||..++.-
T Consensus 12 va~il~~~GF~~~~~~al~~Ltdi~----~~yl~~l~~~~~~~ae~~gRt~~~~~Dv~~al~~ 70 (77)
T PF07524_consen 12 VAQILKHAGFDSASPSALDTLTDIL----QRYLQELGRTAKRYAEHAGRTEPNLQDVEQALEE 70 (77)
T ss_pred HHHHHHHcCccccCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 345555222 8899999999998 5788888888888887667778899999987753
No 320
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=53.54 E-value=58 Score=32.27 Aligned_cols=34 Identities=9% Similarity=-0.061 Sum_probs=19.4
Q ss_pred cchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch
Q psy1686 45 GQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV 82 (448)
Q Consensus 45 GQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt 82 (448)
++..+...+.-+.+-+. +-.+ +.++||+..|||-
T Consensus 87 ~~~~~l~~~~~~~~~~~--~~~n--l~l~G~~G~GKTh 120 (254)
T COG1484 87 IDKKALEDLASLVEFFE--RGEN--LVLLGPPGVGKTH 120 (254)
T ss_pred hhHHHHHHHHHHHHHhc--cCCc--EEEECCCCCcHHH
Confidence 34444444444444444 4456 7788988458863
No 321
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=53.35 E-value=8.8 Score=33.83 Aligned_cols=13 Identities=31% Similarity=0.422 Sum_probs=11.6
Q ss_pred eEEEEeccCCCCH
Q psy1686 177 GVLFIDEVHMLDI 189 (448)
Q Consensus 177 ~VLfIDEVH~L~~ 189 (448)
++++|||+|++..
T Consensus 131 ~~iIiDE~h~~~~ 143 (201)
T smart00487 131 DLVILDEAHRLLD 143 (201)
T ss_pred CEEEEECHHHHhc
Confidence 6899999999975
No 322
>KOG0479|consensus
Probab=53.10 E-value=1.3e+02 Score=34.09 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHcC----C-----------CCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIAL----D-----------TSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 259 i~deal~~La~~a~----~-----------Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
++++|.++|++.=. . =.+|..=.++..|-..|+.+-++.|+.+|.+.++.+
T Consensus 576 Lt~ea~e~Ia~~Y~~LR~~d~~~d~~rt~PiTARtLETlIRLaTAhAKaRlSk~V~~~DAe~A~~L 641 (818)
T KOG0479|consen 576 LTQEAAEYIAEEYTDLRNDDSRKDQERTSPITARTLETLIRLATAHAKARLSKVVEKDDAEAAVNL 641 (818)
T ss_pred ccHHHHHHHHHHHhhhhccccccccccccCCcHHHHHHHHHHHHHHHHhhhcceeehhhHHHHHHH
Confidence 88999999988610 1 135666666666665666566678999999988875
No 323
>KOG0741|consensus
Probab=52.80 E-value=24 Score=39.24 Aligned_cols=60 Identities=22% Similarity=0.241 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCC-------------HHHHHHHHHhhhhcCC--C-eEEEEecC
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLD-------------IECFSFLNRALESEMS--P-VVITATNR 213 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~-------------~~~f~~Llk~lEe~~~--p-i~IlaT~~ 213 (448)
..||+-..+|..+|+..|... -=-|++.||++..- ....|-|+.-+..-.. . .+|.-||+
T Consensus 303 ~NvR~LFaDAEeE~r~~g~~S-gLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR 378 (744)
T KOG0741|consen 303 ENVRKLFADAEEEQRRLGANS-GLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNR 378 (744)
T ss_pred HHHHHHHHhHHHHHHhhCccC-CceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCc
Confidence 789999999999998776543 22677789998761 2456666665553321 2 44445554
No 324
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=52.77 E-value=24 Score=35.07 Aligned_cols=26 Identities=31% Similarity=0.486 Sum_probs=18.8
Q ss_pred HHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhh
Q psy1686 164 TEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALES 201 (448)
Q Consensus 164 ~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe 201 (448)
.++..+|+ +.|+||||+|+| .+++.+
T Consensus 96 ~~~~~~G~----~vll~iDei~r~--------a~a~~e 121 (249)
T cd01128 96 KRLVEHGK----DVVILLDSITRL--------ARAYNT 121 (249)
T ss_pred HHHHHCCC----CEEEEEECHHHh--------hhhhhh
Confidence 44455563 689999999997 666664
No 325
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=52.44 E-value=16 Score=38.36 Aligned_cols=43 Identities=7% Similarity=-0.111 Sum_probs=25.0
Q ss_pred cc-ccccchhhhhh-hHHHHHHHhcCCCCCCCcccccCCCCCcch
Q psy1686 40 SQ-GMVGQLQARRA-AGVVLGMIKEEVVMVWPCVMCGRGKNPQKV 82 (448)
Q Consensus 40 ~~-~~VGQ~~~r~a-~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt 82 (448)
|+ +++||+++... ...++..-....-....+.+.|||.+||||
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKSt 93 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSS 93 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHH
Confidence 45 99999998765 222223222111122346788998568876
No 326
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=50.58 E-value=1.3e+02 Score=30.68 Aligned_cols=41 Identities=17% Similarity=0.040 Sum_probs=32.3
Q ss_pred cccCCCCCHHHHHHHHHHhc---------CCHHHHHHHHHHcCCCCHHHHH
Q psy1686 239 IIPTQPYQDEEIQAILKIRL---------MQTDGLRVLTKIALDTSLRYAI 280 (448)
Q Consensus 239 ii~~~pys~~eI~~IL~~Ra---------i~deal~~La~~a~~Gd~R~AL 280 (448)
.|.+.+|+.+|.+.++++=. .++...+.+.-.+ +|++|...
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s-~GNp~el~ 307 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSS-NGNPRELE 307 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhc-CCCHHHhc
Confidence 78999999999999998622 4566777777777 89988753
No 327
>KOG0481|consensus
Probab=50.54 E-value=60 Score=36.14 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.5
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhc
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESE 202 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~ 202 (448)
.||++|||++-...+--=++..++|..
T Consensus 429 gGVvCIDEFDKMre~DRVAIHEAMEQQ 455 (729)
T KOG0481|consen 429 GGVVCIDEFDKMREDDRVAIHEAMEQQ 455 (729)
T ss_pred CCEEEeehhhccCchhhhHHHHHHHhh
Confidence 389999999999888888889999864
No 328
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=50.01 E-value=28 Score=33.35 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=10.6
Q ss_pred CeEEEEeccCC-CCH
Q psy1686 176 PGVLFIDEVHM-LDI 189 (448)
Q Consensus 176 ~~VLfIDEVH~-L~~ 189 (448)
+.+++|||.-. ++.
T Consensus 109 ~slvllDE~~~gtd~ 123 (213)
T cd03281 109 RSLVLIDEFGKGTDT 123 (213)
T ss_pred CcEEEeccccCCCCH
Confidence 58999999865 443
No 329
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=49.22 E-value=26 Score=33.98 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=23.4
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhh
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALES 201 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe 201 (448)
.+++|||++.|+.++.+.|++..++
T Consensus 84 ~~v~IDEaQF~~~~~v~~l~~lad~ 108 (201)
T COG1435 84 DCVLIDEAQFFDEELVYVLNELADR 108 (201)
T ss_pred CEEEEehhHhCCHHHHHHHHHHHhh
Confidence 6899999999999999999999885
No 330
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=48.78 E-value=1.3e+02 Score=35.24 Aligned_cols=97 Identities=22% Similarity=0.245 Sum_probs=56.4
Q ss_pred CeEEEEeccCCCC-HHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccC----CCCCHHHH
Q psy1686 176 PGVLFIDEVHMLD-IECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPT----QPYQDEEI 250 (448)
Q Consensus 176 ~~VLfIDEVH~L~-~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~----~pys~~eI 250 (448)
|-.|+||+-|+.. +..+..|...++..|.++ ++|-+|-..|++++ ..++=|-.++.+ -.++.+|-
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l---------~lvv~SR~rP~l~l-a~lRlr~~llEi~~~~Lrf~~eE~ 199 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPENL---------TLVVTSRSRPQLGL-ARLRLRDELLEIGSEELRFDTEEA 199 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCCCe---------EEEEEeccCCCCcc-cceeehhhHHhcChHhhcCChHHH
Confidence 5689999999994 333444444444444432 33333335677766 333333333322 24677787
Q ss_pred HHHHHHhc---CCHHHHHHHHHHcCCCCHHHHHHHHH
Q psy1686 251 QAILKIRL---MQTDGLRVLTKIALDTSLRYAIQLIT 284 (448)
Q Consensus 251 ~~IL~~Ra---i~deal~~La~~a~~Gd~R~AL~lLe 284 (448)
.+.++.+. ++...++.|...+ +|= =-|+.+.-
T Consensus 200 ~~fl~~~~~l~Ld~~~~~~L~~~t-eGW-~~al~L~a 234 (894)
T COG2909 200 AAFLNDRGSLPLDAADLKALYDRT-EGW-AAALQLIA 234 (894)
T ss_pred HHHHHHcCCCCCChHHHHHHHhhc-ccH-HHHHHHHH
Confidence 88887555 8888888888887 552 23455443
No 331
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=48.52 E-value=32 Score=39.20 Aligned_cols=90 Identities=13% Similarity=0.022 Sum_probs=51.8
Q ss_pred cCeEEEEeccCCCCH----HHHHHHHHhhhhcCC--CeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHH
Q psy1686 175 VPGVLFIDEVHMLDI----ECFSFLNRALESEMS--PVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDE 248 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~----~~f~~Llk~lEe~~~--pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~ 248 (448)
.+++++|||+|.+.. ...+++.+.+-..-. -.++++|-.-- +..+ ...-.++++-|...-+-+.+.+
T Consensus 637 ~~~~~viDEaw~ll~~~~~~~~~~i~~~~r~~RK~g~~~~~~TQ~~~------D~~~-~~~~~~il~n~~~~i~L~~~~~ 709 (797)
T TIGR02746 637 RRKICIIDEAWSLLDGANPQAADFIETGYRRARKYGGAFITITQGIE------DFYS-SPEARAAYANSDWKIILRQSAE 709 (797)
T ss_pred CceEEEEecHHHHhhcccHHHHHHHHHHHHHHhhcCceEEEEEecHH------Hhcc-CHHHHHHHhcccceeeecCCHH
Confidence 479999999999964 234444444443221 24555555411 1100 0112467777754444556777
Q ss_pred HHHHHHHHhc--CCHHHHHHHHHHc
Q psy1686 249 EIQAILKIRL--MQTDGLRVLTKIA 271 (448)
Q Consensus 249 eI~~IL~~Ra--i~deal~~La~~a 271 (448)
++.++++... ++++..++|....
T Consensus 710 ~~~~~~~~~~~~ls~~e~~~l~~~~ 734 (797)
T TIGR02746 710 SIAKLKAENPFTFSPFEKRLIKSLR 734 (797)
T ss_pred HHHHHHhhCCCCCCHHHHHHHhccC
Confidence 7777765432 8888888887764
No 332
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=46.70 E-value=46 Score=26.89 Aligned_cols=69 Identities=19% Similarity=0.308 Sum_probs=42.4
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILK 255 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~ 255 (448)
+.++++| +++-+.+..+++.+..+..+.+.+|+.|+.. + +-.....+...+.=+-.+|++.+++.+.++
T Consensus 44 ~d~iiid-~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~-------~---~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 44 PDLIIID-LELPDGDGLELLEQIRQINPSIPIIVVTDED-------D---SDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp ESEEEEE-SSSSSSBHHHHHHHHHHHTTTSEEEEEESST-------S---HHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred ceEEEEE-eeeccccccccccccccccccccEEEecCCC-------C---HHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 6889888 7777777888887777776555444444431 0 001112222223345669999999988764
No 333
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=46.69 E-value=41 Score=26.44 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++.+|+.+|..... =+..++++.|..+|...+...|+..||+-+..
T Consensus 28 is~~a~~~L~~~~E----~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r 73 (75)
T PF00125_consen 28 ISSEALVALQSVLE----YLLVEILEEAGNLARHAKRKTITPRDIQLAVR 73 (75)
T ss_dssp ECHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHH
T ss_pred cccccchhhhhhhh----hhhhhhhhHHHHHHhhcCCcEecHHHHHHHHh
Confidence 89999999988872 25677888888888766778999999998765
No 334
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=46.22 E-value=10 Score=39.21 Aligned_cols=53 Identities=32% Similarity=0.442 Sum_probs=37.3
Q ss_pred chhhhcCCCCCCch--HHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcC
Q psy1686 140 FLALFAGDTGEITP--EVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEM 203 (448)
Q Consensus 140 ~~a~~~~~~~eI~~--eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~ 203 (448)
++|+|.-+++..|. +-|+-+ +..- -.+.||+|||..|..+-|..|+|++|+.-
T Consensus 256 msalfghvkgaftga~~~r~gl-------lrsa----dggmlfldeigelgadeqamllkaieekr 310 (531)
T COG4650 256 MSALFGHVKGAFTGARESREGL-------LRSA----DGGMLFLDEIGELGADEQAMLLKAIEEKR 310 (531)
T ss_pred HHHHHhhhccccccchhhhhhh-------hccC----CCceEehHhhhhcCccHHHHHHHHHHhhc
Confidence 77777766665553 223222 1111 13899999999999999999999999853
No 335
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=46.14 E-value=12 Score=33.13 Aligned_cols=15 Identities=40% Similarity=0.538 Sum_probs=12.7
Q ss_pred CeEEEEeccCCCCHH
Q psy1686 176 PGVLFIDEVHMLDIE 190 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~ 190 (448)
.+++++||+|.+...
T Consensus 120 ~~~iViDE~h~l~~~ 134 (169)
T PF00270_consen 120 LSLIVIDEAHHLSDE 134 (169)
T ss_dssp ESEEEEETHHHHHHT
T ss_pred ceeeccCcccccccc
Confidence 378999999999774
No 336
>KOG3334|consensus
Probab=46.02 E-value=97 Score=28.66 Aligned_cols=57 Identities=28% Similarity=0.369 Sum_probs=46.7
Q ss_pred HHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 249 EIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 249 eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
-|..||+ .+ +++.+...+-+++ -||.-.+|+-|..++.-.++..|+.+||+-+.+.-
T Consensus 18 ~i~~iL~-s~GI~eyEprVi~qlLefa----~rYtt~vL~DA~vys~HA~ka~i~~eDVrlA~~~~ 78 (148)
T KOG3334|consen 18 VIASILK-SLGIQEYEPRVINQLLEFA----YRYTTTVLDDAKVYSSHAKKATIDAEDVRLAIQMR 78 (148)
T ss_pred HHHHHHH-HcCccccChHHHHHHHHHH----HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 3567777 44 8899988888888 69999999999999865566789999999988753
No 337
>PRK08939 primosomal protein DnaI; Reviewed
Probab=45.81 E-value=16 Score=37.32 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=11.2
Q ss_pred CeEEEEeccCCCCH
Q psy1686 176 PGVLFIDEVHMLDI 189 (448)
Q Consensus 176 ~~VLfIDEVH~L~~ 189 (448)
..||+|||+..-..
T Consensus 218 ~dlLiIDDiG~e~~ 231 (306)
T PRK08939 218 APVLMLDDIGAEQM 231 (306)
T ss_pred CCEEEEecCCCccc
Confidence 38999999987643
No 338
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=45.20 E-value=43 Score=31.01 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=15.1
Q ss_pred ccCeEEEEeccCCCCHHHHHHHH
Q psy1686 174 IVPGVLFIDEVHMLDIECFSFLN 196 (448)
Q Consensus 174 i~~~VLfIDEVH~L~~~~f~~Ll 196 (448)
..+.++|+||.|..|..+.-+-.
T Consensus 94 ~~yd~II~DEcH~~Dp~sIA~rg 116 (148)
T PF07652_consen 94 KNYDVIIMDECHFTDPTSIAARG 116 (148)
T ss_dssp TS-SEEEECTTT--SHHHHHHHH
T ss_pred cCccEEEEeccccCCHHHHhhhe
Confidence 34689999999999987654433
No 339
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=44.77 E-value=23 Score=33.24 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=19.6
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhh
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALES 201 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe 201 (448)
..+++|||+|.|+ +...-|.+.+.+
T Consensus 77 ~dvI~IDEaQFf~-~~i~~l~~~~~~ 101 (176)
T PF00265_consen 77 YDVIGIDEAQFFD-EQIVQLVEILAN 101 (176)
T ss_dssp CSEEEESSGGGST-TTHHHHHHHHHH
T ss_pred CCEEEEechHhhH-HHHHHHHHHHHh
Confidence 4899999999999 555556677665
No 340
>KOG0870|consensus
Probab=44.06 E-value=1.5e+02 Score=28.10 Aligned_cols=46 Identities=15% Similarity=0.309 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
|+.+|+..|++.| .=+.+.+...+..+|....++.++.+||-.++.
T Consensus 31 isKeA~~Ai~raA----tVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~ 76 (172)
T KOG0870|consen 31 ISKEARLAIARAA----TVFVIFLTSVSNEIAKDQKRKTISADDVLKALD 76 (172)
T ss_pred ccHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcccCcccHHHHHHHHH
Confidence 8899999998877 236777777777788766778999999999886
No 341
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=43.74 E-value=24 Score=35.83 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=17.6
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhh
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALE 200 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lE 200 (448)
.+++|||+|++....+.++...++
T Consensus 126 ~~iViDE~h~~~~~~~~~l~~~l~ 149 (358)
T TIGR01587 126 SLLIFDEVHFYDEYTLALILAVLE 149 (358)
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHH
Confidence 689999999998765555555443
No 342
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=38.08 E-value=37 Score=38.73 Aligned_cols=39 Identities=18% Similarity=0.314 Sum_probs=29.7
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEEecC
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESEMSP-VVITATNR 213 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~ 213 (448)
.+.++||||++.+..++++.++.++-..-.. ++|..+|.
T Consensus 352 tfDLLIVDEAqFIk~~al~~ilp~l~~~n~k~I~ISS~Ns 391 (738)
T PHA03368 352 DFNLLFVDEANFIRPDAVQTIMGFLNQTNCKIIFVSSTNT 391 (738)
T ss_pred cccEEEEechhhCCHHHHHHHHHHHhccCccEEEEecCCC
Confidence 3689999999999999999999998876332 34333443
No 343
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=37.97 E-value=1.5e+02 Score=28.10 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=20.0
Q ss_pred cCeEEEEeccCC-CCHHH----HHHHHHhhhhcCCCeEEEEecC
Q psy1686 175 VPGVLFIDEVHM-LDIEC----FSFLNRALESEMSPVVITATNR 213 (448)
Q Consensus 175 ~~~VLfIDEVH~-L~~~~----f~~Llk~lEe~~~pi~IlaT~~ 213 (448)
.|.++++||.=. ++... ...+++.+.+. ...+|++|-.
T Consensus 105 ~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~-~~tiiivTH~ 147 (199)
T cd03283 105 EPVLFLLDEIFKGTNSRERQAASAAVLKFLKNK-NTIGIISTHD 147 (199)
T ss_pred CCeEEEEecccCCCCHHHHHHHHHHHHHHHHHC-CCEEEEEcCc
Confidence 368999999633 44432 23333333322 3455555554
No 344
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=37.93 E-value=49 Score=38.57 Aligned_cols=36 Identities=11% Similarity=0.108 Sum_probs=23.6
Q ss_pred CCcccccCCCCCcch-hh------hhhhccCccccccCCCccCCCCccccCCCcccce
Q psy1686 68 WPCVMCGRGKNPQKV-KK------ISTATGREEEPDYDGWLADVTKDLRCPDGELQKR 118 (448)
Q Consensus 68 pf~~~~G~ei~GKtt-~~------I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~ 118 (448)
.+++++||=-||||| -| |.+.+| -||||-+.++.-.
T Consensus 593 ~~~iITGPNmgGKSt~lrqvali~imAq~G---------------~~VPA~~a~i~~~ 635 (840)
T TIGR01070 593 RMLLITGPNMGGKSTYMRQTALIALLAQIG---------------SFVPAESAELPLF 635 (840)
T ss_pred cEEEEECCCCCCchHHHHHHHHHHHHHhcC---------------CCccchheEeccc
Confidence 578899986669987 12 666666 4777655554433
No 345
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=37.62 E-value=34 Score=38.33 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.1
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhh
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALE 200 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lE 200 (448)
++++|||+|+++..+...|.....
T Consensus 359 ~lvVIDEaH~fg~~qr~~l~~~~~ 382 (630)
T TIGR00643 359 ALVIIDEQHRFGVEQRKKLREKGQ 382 (630)
T ss_pred ceEEEechhhccHHHHHHHHHhcc
Confidence 789999999999888887766554
No 346
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=36.89 E-value=1.3e+02 Score=26.62 Aligned_cols=59 Identities=14% Similarity=0.127 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 246 QDEEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 246 s~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+...+..+|+... +++.|.-+++..- + -.+-++|+.|...|...+...|+.+||+.+..
T Consensus 22 PV~ri~R~Lk~~~~a~RVs~~A~VyLaAvL-E---YL~aEIlelA~n~ak~~k~krItp~hi~lAi~ 84 (115)
T cd00074 22 PVGRIHRYLKKGRYAERVGAGAPVYLAAVL-E---YLTAEVLELAGNAARDNKKKRITPRHLQLAVR 84 (115)
T ss_pred cHHHHHHHHHcCccccccccchHHHHHHHH-H---HHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHh
Confidence 3446777887422 8888877777664 1 25567899998888766778999999987775
No 347
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=36.84 E-value=73 Score=37.23 Aligned_cols=35 Identities=6% Similarity=0.086 Sum_probs=23.5
Q ss_pred CCcccccCCCCCcch-hh------hhhhccCccccccCCCccCCCCccccCCCcccc
Q psy1686 68 WPCVMCGRGKNPQKV-KK------ISTATGREEEPDYDGWLADVTKDLRCPDGELQK 117 (448)
Q Consensus 68 pf~~~~G~ei~GKtt-~~------I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k 117 (448)
.+++++||--||||| -| |.+..| -||||-++++.-
T Consensus 608 ~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G---------------~~VPa~~a~i~~ 649 (854)
T PRK05399 608 RLLLITGPNMAGKSTYMRQVALIVLLAQIG---------------SFVPAESARIGI 649 (854)
T ss_pred cEEEEECCCCCCcHHHHHHHHHHHHHHhcC---------------CceeccceEecc
Confidence 578899987669987 12 566666 477766655443
No 348
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=36.59 E-value=25 Score=35.17 Aligned_cols=81 Identities=16% Similarity=0.184 Sum_probs=44.8
Q ss_pred cCeEEEEeccCCCCHH------HHHHHHHhhhhcC---CCeEEEEecCceeEeecccc-CCCCCCChhhhhhcccccCCC
Q psy1686 175 VPGVLFIDEVHMLDIE------CFSFLNRALESEM---SPVVITATNRGVTKIRGTAY-SSPHGIPIDLLDRMVIIPTQP 244 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~------~f~~Llk~lEe~~---~pi~IlaT~~~i~lI~~Tte-np~~~Ip~~lLSR~~ii~~~p 244 (448)
++-|+|||++||-.++ ...+|--.++..- ....-.-+-.++.++++.+. ...+.||+-|++.+.++.+.+
T Consensus 100 k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i~~~~~ 179 (272)
T PF12775_consen 100 KKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNILNIPY 179 (272)
T ss_dssp SEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEEEE---
T ss_pred cEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEEEEecC
Confidence 3479999999998542 2344444444321 11111122245667766542 113458889999999999999
Q ss_pred CCHHHHHHHHH
Q psy1686 245 YQDEEIQAILK 255 (448)
Q Consensus 245 ys~~eI~~IL~ 255 (448)
.+.+.+..|..
T Consensus 180 p~~~sl~~If~ 190 (272)
T PF12775_consen 180 PSDESLNTIFS 190 (272)
T ss_dssp -TCCHHHHHHH
T ss_pred CChHHHHHHHH
Confidence 99999988866
No 349
>PRK13695 putative NTPase; Provisional
Probab=36.53 E-value=45 Score=30.39 Aligned_cols=69 Identities=17% Similarity=0.276 Sum_probs=40.6
Q ss_pred cCeEEEEeccCCC---CHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhh--cccccCCCCCHHH
Q psy1686 175 VPGVLFIDEVHML---DIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDR--MVIIPTQPYQDEE 249 (448)
Q Consensus 175 ~~~VLfIDEVH~L---~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR--~~ii~~~pys~~e 249 (448)
.+.++++||+-.+ +...++.|..+++ ...|++ ++++.. ........+..| +.++.+.+-+.++
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~~-~~~~~i-~v~h~~----------~~~~~~~~i~~~~~~~i~~~~~~~r~~ 163 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVLD-SEKPVI-ATLHRR----------SVHPFVQEIKSRPGGRVYELTPENRDS 163 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHHh-CCCeEE-EEECch----------hhHHHHHHHhccCCcEEEEEcchhhhh
Confidence 3688999996544 4455777888884 333433 333431 011122334444 4588888888888
Q ss_pred HHHHHH
Q psy1686 250 IQAILK 255 (448)
Q Consensus 250 I~~IL~ 255 (448)
+...+.
T Consensus 164 ~~~~~~ 169 (174)
T PRK13695 164 LPFEIL 169 (174)
T ss_pred HHHHHH
Confidence 866554
No 350
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=35.93 E-value=43 Score=35.44 Aligned_cols=37 Identities=30% Similarity=0.313 Sum_probs=26.7
Q ss_pred CeEEEEeccCCC----CHHHHHHHHHhhhhcCCCeEEEEec
Q psy1686 176 PGVLFIDEVHML----DIECFSFLNRALESEMSPVVITATN 212 (448)
Q Consensus 176 ~~VLfIDEVH~L----~~~~f~~Llk~lEe~~~pi~IlaT~ 212 (448)
.+++|||||+.| |...+++..++.-..-.-+++.||.
T Consensus 203 FD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp 243 (441)
T COG4098 203 FDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATP 243 (441)
T ss_pred ccEEEEeccccccccCCHHHHHHHHHhhcccCceEEEecCC
Confidence 589999999999 6677888888877543334544544
No 351
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=35.84 E-value=51 Score=37.80 Aligned_cols=38 Identities=8% Similarity=0.163 Sum_probs=32.1
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNR 213 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~ 213 (448)
..++++||++.+..+++..++.++.....|.+++.+..
T Consensus 295 ~DLLIVDEAAfI~~~~l~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 295 PDLVIVDEAAFVNPGALLSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHccCCCceEEEeCCC
Confidence 48999999999999999999999998777766655544
No 352
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=34.09 E-value=2.9e+02 Score=27.80 Aligned_cols=28 Identities=4% Similarity=0.105 Sum_probs=20.0
Q ss_pred hHHHHHHHhcCCCCCCCcccccCCCCCcch
Q psy1686 53 AGVVLGMIKEEVVMVWPCVMCGRGKNPQKV 82 (448)
Q Consensus 53 ~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt 82 (448)
...+..+.+.+++.+ +.+.||+..||||
T Consensus 99 ~~~l~~l~~~~~~~~--~~i~g~~g~GKtt 126 (270)
T TIGR02858 99 DKLLPYLVRNNRVLN--TLIISPPQCGKTT 126 (270)
T ss_pred HHHHHHHHhCCCeeE--EEEEcCCCCCHHH
Confidence 445667777777767 7788988448877
No 353
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=33.03 E-value=1.3e+02 Score=35.33 Aligned_cols=88 Identities=15% Similarity=0.112 Sum_probs=47.0
Q ss_pred cCeEEEEeccCCCCH--HHHHHHHHhhhhcC--CCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHH
Q psy1686 175 VPGVLFIDEVHMLDI--ECFSFLNRALESEM--SPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEI 250 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~--~~f~~Llk~lEe~~--~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI 250 (448)
.+++++|||+|.+.. ..-.++.+.+-..- .-.++++|-.--.+. ++ ..++++-|.-.-+-+.+.+++
T Consensus 733 r~~~~viDEaw~l~~~~~~a~fi~~~~k~~RK~g~~~~~aTQsi~D~~-----~s----a~~il~ns~~~i~L~q~~~~~ 803 (893)
T TIGR03744 733 RPIVMVTDEGHIITTNPLLAPYVVKITKMWRKLGAWFWLATQNLADFP-----DS----AEKMLNMIEWWLCLNMPPDEV 803 (893)
T ss_pred ceEEEEeehHhhhhcCHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHhh-----hH----HHHHHHhchhhhhhcCCHHHH
Confidence 478999999999842 22333333333221 225555665421111 11 356777775222334466666
Q ss_pred HHHHHHhcCCHHHHHHHHHHc
Q psy1686 251 QAILKIRLMQTDGLRVLTKIA 271 (448)
Q Consensus 251 ~~IL~~Rai~deal~~La~~a 271 (448)
.++.+..-+++...++|....
T Consensus 804 ~~~~~~~~Ls~~q~~~i~s~~ 824 (893)
T TIGR03744 804 EQIARFRELTEEQKAMLLSAR 824 (893)
T ss_pred HHHHHhcCCCHHHHHHHHhcc
Confidence 555443227888888776553
No 354
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=30.36 E-value=67 Score=34.62 Aligned_cols=39 Identities=21% Similarity=0.409 Sum_probs=30.6
Q ss_pred cCeEEEEeccCCCCH-HHHHHHHHhhhhcCCCeEEEEecC
Q psy1686 175 VPGVLFIDEVHMLDI-ECFSFLNRALESEMSPVVITATNR 213 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~-~~f~~Llk~lEe~~~pi~IlaT~~ 213 (448)
.+.++++||+|-+.. +..+.|..++-..+.|.++..||.
T Consensus 123 ~~~~~i~DE~h~~~~~~~~~~l~~g~~~r~~pl~~~ISTa 162 (477)
T PF03354_consen 123 NPSLAIFDELHAHKDDELYDALESGMGARPNPLIIIISTA 162 (477)
T ss_pred CCceEEEeCCCCCCCHHHHHHHHhhhccCCCceEEEEeCC
Confidence 468999999999976 588888888887777866555554
No 355
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=29.64 E-value=47 Score=37.42 Aligned_cols=43 Identities=7% Similarity=-0.130 Sum_probs=31.3
Q ss_pred ccccccchhhhhh-hHHHHHHHhcCCCCCCCcccccCCCCCcch
Q psy1686 40 SQGMVGQLQARRA-AGVVLGMIKEEVVMVWPCVMCGRGKNPQKV 82 (448)
Q Consensus 40 ~~~~VGQ~~~r~a-~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt 82 (448)
|+++.|++++... ...|+.+.+...-.++-+.+.|||.+|||+
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSs 118 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSS 118 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchH
Confidence 7899999999876 445555555554455667788998669987
No 356
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=29.49 E-value=48 Score=30.75 Aligned_cols=64 Identities=13% Similarity=0.205 Sum_probs=34.4
Q ss_pred CeEEEEeccCCC---CHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhh--cccccCCCCCHHHH
Q psy1686 176 PGVLFIDEVHML---DIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDR--MVIIPTQPYQDEEI 250 (448)
Q Consensus 176 ~~VLfIDEVH~L---~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR--~~ii~~~pys~~eI 250 (448)
+.+++||||-.+ ...-+.++.++++ +.-| +++|=. ..+.+.....+.+| +.+|.+.+-+.+++
T Consensus 96 ~~liviDEIG~mEl~~~~F~~~v~~~l~-s~~~--vi~vv~---------~~~~~~~l~~i~~~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 96 SDLIVIDEIGKMELKSPGFREAVEKLLD-SNKP--VIGVVH---------KRSDNPFLEEIKRRPDVKIFEVTEENRDAL 163 (168)
T ss_dssp CHEEEE---STTCCC-CHHHHHHHHHHC-TTSE--EEEE-----------SS--SCCHHHHHTTTTSEEEE--TTTCCCH
T ss_pred CCEEEEeccchhhhcCHHHHHHHHHHHc-CCCc--EEEEEe---------cCCCcHHHHHHHhCCCcEEEEeChhHHhhH
Confidence 379999999988 4566778888888 2223 223322 11122234677777 77888887777666
Q ss_pred H
Q psy1686 251 Q 251 (448)
Q Consensus 251 ~ 251 (448)
.
T Consensus 164 ~ 164 (168)
T PF03266_consen 164 P 164 (168)
T ss_dssp H
T ss_pred h
Confidence 3
No 357
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=29.41 E-value=84 Score=35.67 Aligned_cols=88 Identities=14% Similarity=0.103 Sum_probs=45.1
Q ss_pred cCeEEEEeccCCC--CHHHHHHHHHhhhhcCC--CeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHH
Q psy1686 175 VPGVLFIDEVHML--DIECFSFLNRALESEMS--PVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEI 250 (448)
Q Consensus 175 ~~~VLfIDEVH~L--~~~~f~~Llk~lEe~~~--pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI 250 (448)
.|++++|||+|.+ ++...+++...+...-. -.++++|..--.+ .+ ..+-.++++-|...-+-|.+..++
T Consensus 629 ~~~~i~iDEa~~ll~~~~~~~~i~~~~r~~RK~~~~~~~~TQ~~~d~-----~~--~~~~~~il~n~~~ki~l~~~~~~~ 701 (785)
T TIGR00929 629 RPFLIIIDEAWQYLGNPVFAAKIRDWLKTLRKANGIVVLATQSINDA-----LG--SRIADSILEQCATKIFLPNPEADR 701 (785)
T ss_pred CCeEEEEechhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-----hc--CchHHHHHHhCCEEEEcCCCCCCH
Confidence 5799999999998 34445555555444322 2455555431100 01 123356777775222233333333
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q psy1686 251 QAILKIRLMQTDGLRVLTK 269 (448)
Q Consensus 251 ~~IL~~Rai~deal~~La~ 269 (448)
..+.+.-.++++.+++|..
T Consensus 702 ~~~~~~~~ls~~e~~~i~~ 720 (785)
T TIGR00929 702 EDYAEGFKLTEREFELLKS 720 (785)
T ss_pred HHHHHHcCCCHHHHHHHHc
Confidence 3333211178887877766
No 358
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=29.40 E-value=41 Score=31.96 Aligned_cols=71 Identities=17% Similarity=0.241 Sum_probs=36.9
Q ss_pred ccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCC
Q psy1686 71 VMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTG 149 (448)
Q Consensus 71 ~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~ 149 (448)
.++|+|.+|||| ++.. |..+.. +++. .|.+++.-.-...+||-|. +.+-..+
T Consensus 4 tIsG~pGsG~TTva~~l-------Ae~~gl------~~vs--aG~iFR~~A~e~gmsl~ef----------~~~AE~~-- 56 (179)
T COG1102 4 TISGLPGSGKTTVAREL-------AEHLGL------KLVS--AGTIFREMARERGMSLEEF----------SRYAEED-- 56 (179)
T ss_pred EeccCCCCChhHHHHHH-------HHHhCC------ceee--ccHHHHHHHHHcCCCHHHH----------HHHHhcC--
Confidence 356777458876 4422 222222 4444 5666665555555555553 3322233
Q ss_pred CCchHHHHHHHHHHHHHHHhCc
Q psy1686 150 EITPEVREQISAKVTEWREEGK 171 (448)
Q Consensus 150 eI~~eiR~~I~~~v~~~~~~g~ 171 (448)
.++=..|++.......+|+
T Consensus 57 ---p~iD~~iD~rq~e~a~~~n 75 (179)
T COG1102 57 ---PEIDKEIDRRQKELAKEGN 75 (179)
T ss_pred ---chhhHHHHHHHHHHHHcCC
Confidence 5566677776666555553
No 359
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=29.33 E-value=38 Score=34.82 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=19.1
Q ss_pred cCeEEEEeccCCCCHH--------HHHHHHHhhhh
Q psy1686 175 VPGVLFIDEVHMLDIE--------CFSFLNRALES 201 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~--------~f~~Llk~lEe 201 (448)
..+|+||||+|+|... ..+.|...+..
T Consensus 83 ~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 83 KYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred cCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 4599999999999762 23555555554
No 360
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=28.18 E-value=37 Score=35.30 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=23.6
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhcC
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESEM 203 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~~ 203 (448)
.+|+||||-|++...|+.+.+.+.+..
T Consensus 104 ~~lIiDEism~~~~~l~~i~~~lr~i~ 130 (364)
T PF05970_consen 104 DVLIIDEISMVSADMLDAIDRRLRDIR 130 (364)
T ss_pred eeeecccccchhHHHHHHHHHhhhhhh
Confidence 789999999999999999988777543
No 361
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=27.77 E-value=38 Score=36.62 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=25.7
Q ss_pred cccccchhhhhhhHHHHHH--HhcC-------C--CCCCCcccccCCCCCcch-hh
Q psy1686 41 QGMVGQLQARRAAGVVLGM--IKEE-------V--VMVWPCVMCGRGKNPQKV-KK 84 (448)
Q Consensus 41 ~~~VGQ~~~r~a~~~l~~m--I~~~-------k--i~gpf~~~~G~ei~GKtt-~~ 84 (448)
+-+|||++++++..+.... .+.+ . ..+ +.+.||+..|||+ |+
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~--ILLiGppG~GKT~lAr 65 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKN--ILMIGPTGVGKTEIAR 65 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCce--EEEECCCCCCHHHHHH
Confidence 5689999999885443331 1111 0 124 6788998558876 55
No 362
>PRK10536 hypothetical protein; Provisional
Probab=27.38 E-value=71 Score=32.23 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=22.5
Q ss_pred ccCeEEEEeccCCCCHHHHHHHHHhhh
Q psy1686 174 IVPGVLFIDEVHMLDIECFSFLNRALE 200 (448)
Q Consensus 174 i~~~VLfIDEVH~L~~~~f~~Llk~lE 200 (448)
+..++++|||+++++..+...++..+-
T Consensus 175 l~~~~vIvDEaqn~~~~~~k~~ltR~g 201 (262)
T PRK10536 175 FENAVVILDEAQNVTAAQMKMFLTRLG 201 (262)
T ss_pred ccCCEEEEechhcCCHHHHHHHHhhcC
Confidence 455899999999999988887777665
No 363
>PF05729 NACHT: NACHT domain
Probab=27.38 E-value=1.4e+02 Score=25.80 Aligned_cols=69 Identities=19% Similarity=0.379 Sum_probs=38.1
Q ss_pred CeEEEEeccCCCCHHH--------HHHHHHhhhhcCCC--eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCC
Q psy1686 176 PGVLFIDEVHMLDIEC--------FSFLNRALESEMSP--VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPY 245 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~--------f~~Llk~lEe~~~p--i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~py 245 (448)
+-+++||=++-+.... .+.|...+.....| .+++++... . ...+ ...+.....+.+.|+
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~---------~-~~~~-~~~~~~~~~~~l~~~ 150 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPR---------A-FPDL-RRRLKQAQILELEPF 150 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCC---------h-HHHH-HHhcCCCcEEEECCC
Confidence 4678888888875532 23455555552222 333332220 0 1011 222333357888999
Q ss_pred CHHHHHHHHH
Q psy1686 246 QDEEIQAILK 255 (448)
Q Consensus 246 s~~eI~~IL~ 255 (448)
+.+++.+.++
T Consensus 151 ~~~~~~~~~~ 160 (166)
T PF05729_consen 151 SEEDIKQYLR 160 (166)
T ss_pred CHHHHHHHHH
Confidence 9999999887
No 364
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=27.21 E-value=2.1e+02 Score=32.47 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=23.5
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEec
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESEMSPVVITATN 212 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~ 212 (448)
.+|.||--.-|--+.+.||+-++---+.-++-++|.
T Consensus 137 VlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~Th 172 (1077)
T COG5192 137 VLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTH 172 (1077)
T ss_pred eEEEeccccCceehHHHHHHHHhhcCCCceEEEEee
Confidence 567789888888888998886655332224434444
No 365
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=26.97 E-value=64 Score=36.33 Aligned_cols=26 Identities=35% Similarity=0.425 Sum_probs=23.6
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhh
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALE 200 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lE 200 (448)
..+|++|||+-|++...+..|++++-
T Consensus 265 ~~dvlIvDEaSMvd~~lm~~ll~al~ 290 (615)
T PRK10875 265 HLDVLVVDEASMVDLPMMARLIDALP 290 (615)
T ss_pred CCCeEEEChHhcccHHHHHHHHHhcc
Confidence 34899999999999999999999986
No 366
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=26.83 E-value=4.3e+02 Score=26.45 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=32.6
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILK 255 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~ 255 (448)
..+++.|.-++...=-.+.-+-+.+-.....+| +-..|.+..-|.-.=+=+|+.++-++++..
T Consensus 74 n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciI-----------------yl~~plDtc~rrN~ergepip~Evl~qly~ 136 (261)
T COG4088 74 NYLVIVDDTNYYKSMRRQLACEAKERKTTWCII-----------------YLRTPLDTCLRRNRERGEPIPEEVLRQLYD 136 (261)
T ss_pred ceEEEEecccHHHHHHHHHHHHHHhcCCceEEE-----------------EEccCHHHHHHhhccCCCCCCHHHHHHHHH
Confidence 468899999987543333333344432222222 122344444333344456777766666665
No 367
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=26.65 E-value=90 Score=35.55 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=23.6
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEec
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESEMSPVVITATN 212 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~ 212 (448)
++++|||=|||+-.|-..|..-=+. ..+.++|.-|
T Consensus 386 gLVIiDEQHRFGV~QR~~L~~KG~~-~Ph~LvMTAT 420 (677)
T COG1200 386 GLVIIDEQHRFGVHQRLALREKGEQ-NPHVLVMTAT 420 (677)
T ss_pred eEEEEeccccccHHHHHHHHHhCCC-CCcEEEEeCC
Confidence 7889999999999998777544443 2234444433
No 368
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=26.42 E-value=4.4e+02 Score=25.81 Aligned_cols=76 Identities=17% Similarity=0.170 Sum_probs=33.4
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhcC------CCeEEEEecCce-------eEeec-cccCCCCCCChhhhhhcccccC
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESEM------SPVVITATNRGV-------TKIRG-TAYSSPHGIPIDLLDRMVIIPT 242 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~~------~pi~IlaT~~~i-------~lI~~-Ttenp~~~Ip~~lLSR~~ii~~ 242 (448)
.-+++||+|+|+.+..+++-.-++... ...+.+ ....+ +++-. ..+.-...+|..|.+-++-+.+
T Consensus 86 aW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~-~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRpvam 164 (231)
T PF12774_consen 86 AWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTL-EGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFRPVAM 164 (231)
T ss_dssp -EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEE-TTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEEEEE-
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHhhccccccccc-CCCEEEEccceeEEEeeccccCCcccCCHhHHHHhheeEE
Confidence 567889999999877666643333211 111111 01111 11100 0122234688888887766655
Q ss_pred CCCCHHHHHHH
Q psy1686 243 QPYQDEEIQAI 253 (448)
Q Consensus 243 ~pys~~eI~~I 253 (448)
..-+..-|.++
T Consensus 165 ~~PD~~~I~ei 175 (231)
T PF12774_consen 165 MVPDLSLIAEI 175 (231)
T ss_dssp -S--HHHHHHH
T ss_pred eCCCHHHHHHH
Confidence 55554444443
No 369
>PHA02558 uvsW UvsW helicase; Provisional
Probab=26.39 E-value=54 Score=35.54 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=18.3
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhh
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRAL 199 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~l 199 (448)
.+++++||+|++....+..+++.+
T Consensus 223 ~~~iIvDEaH~~~~~~~~~il~~~ 246 (501)
T PHA02558 223 FGMVIVDECHLFTGKSLTSIITKL 246 (501)
T ss_pred cCEEEEEchhcccchhHHHHHHhh
Confidence 378999999999876666655544
No 370
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=26.15 E-value=45 Score=33.60 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=15.7
Q ss_pred cCeEEEEeccCCCCHHHHHHH
Q psy1686 175 VPGVLFIDEVHMLDIECFSFL 195 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~L 195 (448)
...+++|||+|.|...+.+.+
T Consensus 236 ~~~~lIiDEAHnL~d~a~~~~ 256 (289)
T smart00488 236 KDSIVIFDEAHNLDNVCISAL 256 (289)
T ss_pred cccEEEEeCccChHHHHHHHh
Confidence 458999999999865555544
No 371
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=26.15 E-value=45 Score=33.60 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=15.7
Q ss_pred cCeEEEEeccCCCCHHHHHHH
Q psy1686 175 VPGVLFIDEVHMLDIECFSFL 195 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~L 195 (448)
...+++|||+|.|...+.+.+
T Consensus 236 ~~~~lIiDEAHnL~d~a~~~~ 256 (289)
T smart00489 236 KDSIVIFDEAHNLDNVCISAL 256 (289)
T ss_pred cccEEEEeCccChHHHHHHHh
Confidence 458999999999865555544
No 372
>COG3899 Predicted ATPase [General function prediction only]
Probab=25.90 E-value=3.8e+02 Score=31.45 Aligned_cols=100 Identities=12% Similarity=0.198 Sum_probs=69.4
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhcC--C----CeEEEEecCceeEeeccccCCCCCCChhhhhhc--ccccCCCCC
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESEM--S----PVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM--VIIPTQPYQ 246 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~~--~----pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~--~ii~~~pys 246 (448)
+|-|+|+|++|=-|..+.++|-..+.+.. . +++...+.. |. ++...+++- ..|.+.|++
T Consensus 154 ~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~-----------~~--~~~~~~~~~~i~~I~L~PL~ 220 (849)
T COG3899 154 HPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLR-----------PT--LGEILKSATNITTITLAPLS 220 (849)
T ss_pred CCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCcc-----------ch--hhHHhhcCCceeEEecCcCc
Confidence 57899999999999999999999998754 1 122111111 11 233344443 378999999
Q ss_pred HHHHHHHHHHhc-----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy1686 247 DEEIQAILKIRL-----MQTDGLRVLTKIALDTSLRYAIQLITTASV 288 (448)
Q Consensus 247 ~~eI~~IL~~Ra-----i~deal~~La~~a~~Gd~R~AL~lLe~a~~ 288 (448)
..+....+.... ...+..+.+.+.+ .|.+=++-+.+.....
T Consensus 221 ~~d~~~lV~~~l~~~~~~~~p~~~~i~~kt-~GnPfFi~e~lk~l~~ 266 (849)
T COG3899 221 RADTNQLVAATLGCTKLLPAPLLELIFEKT-KGNPFFIEEFLKALYE 266 (849)
T ss_pred hhhHHHHHHHHhCCcccccchHHHHHHHHh-cCCCccHHHHHHHHHh
Confidence 999988887543 5566778888887 7787777777765543
No 373
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=25.79 E-value=93 Score=39.02 Aligned_cols=93 Identities=6% Similarity=0.015 Sum_probs=55.5
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhh--hhhcccccCCCCCHHHHHH
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDL--LDRMVIIPTQPYQDEEIQA 252 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~l--LSR~~ii~~~pys~~eI~~ 252 (448)
...|+||||.-|++...+.-|++.++.. ...++++|=+...|+-+--.+| +-....+ +.-.|.+
T Consensus 930 ~~~llIVDEASMV~~~~m~~ll~~~~~~---------garvVLVGD~~QL~sV~aG~~F~~lq~~~~~-----~ta~L~e 995 (1623)
T PRK14712 930 SNTLFLLDESSMVGNTDMARAYALIAAG---------GGRAVASGDTDQLQAIAPGQPFRLQQTRSAA-----DVVIMKE 995 (1623)
T ss_pred CCcEEEEEccccccHHHHHHHHHhhhhC---------CCEEEEEcchhhcCCCCCCHHHHHHHHcCCC-----CeEEeCe
Confidence 3589999999999999999999988842 2234555555544443322222 1111111 1112334
Q ss_pred HHHHhcCCHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy1686 253 ILKIRLMQTDGLRVLTKIALDTSLRYAIQLITT 285 (448)
Q Consensus 253 IL~~Rai~deal~~La~~a~~Gd~R~AL~lLe~ 285 (448)
|.+ =.++.......++ +|....||..|+.
T Consensus 996 I~R---Q~~elr~AV~~~~-~g~~~~AL~~L~~ 1024 (1623)
T PRK14712 996 IVR---QTPELREAVYSLI-NRDVERALSGLER 1024 (1623)
T ss_pred eec---CCHHHHHHHHHHH-cCCHHHHHHHHhh
Confidence 443 1344445555556 8899999999975
No 374
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=25.79 E-value=63 Score=38.91 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=24.3
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhc
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESE 202 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~ 202 (448)
..|++|||+.|++...+..|++..+..
T Consensus 469 ~~vlVIDEAsMv~~~~m~~Ll~~~~~~ 495 (1102)
T PRK13826 469 KTVFVLDEAGMVASRQMALFVEAVTRA 495 (1102)
T ss_pred CcEEEEECcccCCHHHHHHHHHHHHhc
Confidence 379999999999999999999998853
No 375
>PRK06921 hypothetical protein; Provisional
Probab=24.56 E-value=1.9e+02 Score=28.87 Aligned_cols=11 Identities=45% Similarity=0.712 Sum_probs=9.5
Q ss_pred CeEEEEeccCC
Q psy1686 176 PGVLFIDEVHM 186 (448)
Q Consensus 176 ~~VLfIDEVH~ 186 (448)
..||+|||+|+
T Consensus 178 ~dlLiIDDl~~ 188 (266)
T PRK06921 178 VEVLFIDDLFK 188 (266)
T ss_pred CCEEEEecccc
Confidence 38999999976
No 376
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=24.52 E-value=1.3e+02 Score=27.11 Aligned_cols=37 Identities=27% Similarity=0.205 Sum_probs=27.6
Q ss_pred eEEEEeccC-CCCHHHHHHHHHhhhhcCC--CeEEEEecC
Q psy1686 177 GVLFIDEVH-MLDIECFSFLNRALESEMS--PVVITATNR 213 (448)
Q Consensus 177 ~VLfIDEVH-~L~~~~f~~Llk~lEe~~~--pi~IlaT~~ 213 (448)
++++|||.. .|++..|..|.+.+.+... ..||++|-.
T Consensus 259 ~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHS 298 (303)
T PF13304_consen 259 SILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHS 298 (303)
T ss_dssp SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-
T ss_pred eEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCcc
Confidence 899999995 4689999999898876544 456666543
No 377
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=24.52 E-value=71 Score=26.96 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=25.0
Q ss_pred CCCChHHHHHHHHHHHHHHHhccceeechhh
Q psy1686 389 GEITPEVREQISAKVTEWREEGHSEKNRVKL 419 (448)
Q Consensus 389 ~EI~~e~R~~i~~~v~~~i~~g~aelv~~~~ 419 (448)
.-.+++.|+++|+.|++|.++-. +|-||=
T Consensus 26 ~~L~~~~r~~~d~~i~~y~~~~~--lVDGvP 54 (85)
T PF07240_consen 26 LPLTPQDRQRIDRFIRRYKEENN--LVDGVP 54 (85)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh--cccCcC
Confidence 45899999999999999999886 777754
No 378
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=24.48 E-value=38 Score=31.00 Aligned_cols=13 Identities=31% Similarity=0.654 Sum_probs=11.3
Q ss_pred CeEEEEeccCCCC
Q psy1686 176 PGVLFIDEVHMLD 188 (448)
Q Consensus 176 ~~VLfIDEVH~L~ 188 (448)
..|++|||+|.|.
T Consensus 146 ~~ivI~DEAHNL~ 158 (174)
T PF06733_consen 146 DNIVIFDEAHNLE 158 (174)
T ss_dssp CEEEEETTGGGCG
T ss_pred CcEEEEecccchH
Confidence 4899999999983
No 379
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=24.47 E-value=34 Score=30.84 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=27.4
Q ss_pred ccccccchhhhhhhHHHHHHHhcCCCCC-----C-CcccccCCCCCcc-hhhhhhh
Q psy1686 40 SQGMVGQLQARRAAGVVLGMIKEEVVMV-----W-PCVMCGRGKNPQK-VKKISTA 88 (448)
Q Consensus 40 ~~~~VGQ~~~r~a~~~l~~mI~~~ki~g-----p-f~~~~G~ei~GKt-t~~I~~~ 88 (448)
-+.+.||.-+.+ ++.++|+. .+++ | -+.+.|++.+||+ +++++++
T Consensus 24 ~~~l~GQhla~~---~v~~ai~~-~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~ 75 (127)
T PF06309_consen 24 QRNLFGQHLAVE---VVVNAIKG-HLANPNPRKPLVLSFHGWTGTGKNFVSRLIAE 75 (127)
T ss_pred HHHccCcHHHHH---HHHHHHHH-HHcCCCCCCCEEEEeecCCCCcHHHHHHHHHH
Confidence 467999988864 46777663 2221 3 2346788755886 3665433
No 380
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=23.86 E-value=64 Score=34.57 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=20.4
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhh
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALES 201 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe 201 (448)
++.+++||+|++....+..+......
T Consensus 147 ~~liI~DE~Hh~~a~~~~~~~~~~~~ 172 (442)
T COG1061 147 FGLIIFDEVHHLPAPSYRRILELLSA 172 (442)
T ss_pred cCEEEEEccccCCcHHHHHHHHhhhc
Confidence 58999999999987776666666554
No 381
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=23.57 E-value=1.2e+02 Score=35.55 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=16.4
Q ss_pred CCcccccCCCCCcch-hh------hhhhcc
Q psy1686 68 WPCVMCGRGKNPQKV-KK------ISTATG 90 (448)
Q Consensus 68 pf~~~~G~ei~GKtt-~~------I~~~~g 90 (448)
-+++++||=-|||+| -| |.++.|
T Consensus 608 ~i~lITGPNM~GKSTylRQvali~imAQiG 637 (843)
T COG0249 608 RIILITGPNMGGKSTYLRQVALIVILAQIG 637 (843)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcC
Confidence 457789986669987 22 777777
No 382
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=23.50 E-value=3.4e+02 Score=28.15 Aligned_cols=56 Identities=18% Similarity=0.279 Sum_probs=42.1
Q ss_pred HHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 249 EIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 249 eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
-++.|.+ .+ ++++|...|++-. + -++-++++.|..++...+++.++.+||..++..
T Consensus 4 ~i~~ia~-~~Gi~~~~~~a~~~La~~~-e---~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~~ 63 (343)
T cd08050 4 SIKLIAE-SLGIDSLSDEVAQLLAEDV-E---YRLREIIQEAAKFMRHSKRRKLTTSDVNHALRL 63 (343)
T ss_pred HHHHHHH-HcCCCcCCHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHH
Confidence 4556665 33 9999999998876 2 245667777877776567789999999999874
No 383
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=23.19 E-value=8.2e+02 Score=25.03 Aligned_cols=111 Identities=22% Similarity=0.234 Sum_probs=72.2
Q ss_pred cCeEEEEeccCCC-CHHHHHHHHHhhhhcC----CCeEEEEecCceeEeecc-ccCCCC--CCC--------hhhhhhcc
Q psy1686 175 VPGVLFIDEVHML-DIECFSFLNRALESEM----SPVVITATNRGVTKIRGT-AYSSPH--GIP--------IDLLDRMV 238 (448)
Q Consensus 175 ~~~VLfIDEVH~L-~~~~f~~Llk~lEe~~----~pi~IlaT~~~i~lI~~T-tenp~~--~Ip--------~~lLSR~~ 238 (448)
.+-|+|.|+.-.= +-+.+-+|-.++|... ..+++-||...=-++.-. .+|+-. .|. ..|=+|+.
T Consensus 139 ~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFG 218 (287)
T COG2607 139 EKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFG 218 (287)
T ss_pred ceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcc
Confidence 4689999997543 3467777777777554 458888887765555533 222221 121 14567875
Q ss_pred -cccCCCCCHHHHHHHHHHhc------CCH-----HHHHHHHHHcCCCCHHHHHHHHHHH
Q psy1686 239 -IIPTQPYQDEEIQAILKIRL------MQT-----DGLRVLTKIALDTSLRYAIQLITTA 286 (448)
Q Consensus 239 -ii~~~pys~~eI~~IL~~Ra------i~d-----eal~~La~~a~~Gd~R~AL~lLe~a 286 (448)
=+.|.|.+.++-.+|+..-+ +++ +|++|=...+ +-|.|.|-+...-.
T Consensus 219 LwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg-~RSGR~A~QF~~~~ 277 (287)
T COG2607 219 LWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRG-GRSGRVAWQFIRDL 277 (287)
T ss_pred eeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCccHhHHHHHHHH
Confidence 78899999999888887433 555 4556555555 55888887776543
No 384
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=22.89 E-value=1.1e+02 Score=39.37 Aligned_cols=95 Identities=13% Similarity=0.138 Sum_probs=53.4
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCC--CChhhhhhcccccCCCCCHHHHHH
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHG--IPIDLLDRMVIIPTQPYQDEEIQA 252 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~--Ip~~lLSR~~ii~~~pys~~eI~~ 252 (448)
...|++|||+-|++...+..|++..+..- ..++++|-+..-||.+ -|..++-....+ ..-.|.+
T Consensus 1112 ~~~v~ivDEasMv~~~~~~~l~~~~~~~~---------ak~vlvGD~~QL~sV~aG~~f~~~~~~~~~-----~~~~L~~ 1177 (1960)
T TIGR02760 1112 RNTLFILDESSMVSNFQLTHATELVQKSG---------SRAVSLGDIAQLQSLAAGKPFELAITFDII-----DTAIMKE 1177 (1960)
T ss_pred cccEEEEEccccccHHHHHHHHHhccCCC---------CEEEEeCChhhcCCCCCCcCHHHHHhcCCC-----CeEEeee
Confidence 35899999999999999999999887532 2234555444333332 233333322112 1223445
Q ss_pred HHHHhcCCHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy1686 253 ILKIRLMQTDGLRVLTKIALDTSLRYAIQLITT 285 (448)
Q Consensus 253 IL~~Rai~deal~~La~~a~~Gd~R~AL~lLe~ 285 (448)
|.+.+ =+++-.+....++ .|+.-.||..|++
T Consensus 1178 I~RQ~-~~~~l~~a~~~~~-~~~~~~al~~l~~ 1208 (1960)
T TIGR02760 1178 IVRQN-NSAELKAAHNSLD-KRSNPKALELLKN 1208 (1960)
T ss_pred EecCC-CCHHHHHHHHHHh-cCcHHHHHHHHhc
Confidence 55432 1222222222234 7888888888874
No 385
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=22.56 E-value=1e+02 Score=34.55 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=23.4
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhh
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALE 200 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lE 200 (448)
..++++|||+-|++...+..|++++-
T Consensus 259 ~~dvlIiDEaSMvd~~l~~~ll~al~ 284 (586)
T TIGR01447 259 PLDVLVVDEASMVDLPLMAKLLKALP 284 (586)
T ss_pred cccEEEEcccccCCHHHHHHHHHhcC
Confidence 35899999999999999999999875
No 386
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=22.28 E-value=83 Score=35.68 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=17.4
Q ss_pred eEEEEeccCCCCHHHHHHHHH
Q psy1686 177 GVLFIDEVHMLDIECFSFLNR 197 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk 197 (448)
++++|||+|++...+...|..
T Consensus 385 ~lvVIDE~Hrfg~~qr~~l~~ 405 (681)
T PRK10917 385 GLVIIDEQHRFGVEQRLALRE 405 (681)
T ss_pred ceEEEechhhhhHHHHHHHHh
Confidence 789999999998877776654
No 387
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=21.41 E-value=93 Score=35.77 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=23.8
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhc
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESE 202 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~ 202 (448)
..++++|||+-|++...+..|++..+..
T Consensus 439 ~~~llIvDEasMv~~~~~~~Ll~~~~~~ 466 (744)
T TIGR02768 439 DKDVLVIDEAGMVGSRQMARVLKEAEEA 466 (744)
T ss_pred CCcEEEEECcccCCHHHHHHHHHHHHhc
Confidence 3589999999999999999999866643
No 388
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=20.80 E-value=68 Score=31.02 Aligned_cols=13 Identities=31% Similarity=0.360 Sum_probs=11.6
Q ss_pred cCeEEEEeccCCC
Q psy1686 175 VPGVLFIDEVHML 187 (448)
Q Consensus 175 ~~~VLfIDEVH~L 187 (448)
..+++++||.|++
T Consensus 134 ~~~~vIvDEaH~~ 146 (299)
T PF00176_consen 134 KWDRVIVDEAHRL 146 (299)
T ss_dssp EEEEEEETTGGGG
T ss_pred cceeEEEeccccc
Confidence 3689999999999
No 389
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=20.51 E-value=38 Score=31.15 Aligned_cols=14 Identities=7% Similarity=0.057 Sum_probs=9.5
Q ss_pred CcccccCCCCCcch
Q psy1686 69 PCVMCGRGKNPQKV 82 (448)
Q Consensus 69 f~~~~G~ei~GKtt 82 (448)
++.++|||.+|||+
T Consensus 19 ~~~i~GpPGTGKT~ 32 (236)
T PF13086_consen 19 ITLIQGPPGTGKTT 32 (236)
T ss_dssp -EEEE-STTSSHHH
T ss_pred CEEEECCCCCChHH
Confidence 47789999668874
No 390
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=20.44 E-value=88 Score=37.29 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=23.3
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhh
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALES 201 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe 201 (448)
.+||+|||+-|++...+..|++..+.
T Consensus 434 ~~vlIVDEASMv~~~~m~~LL~~a~~ 459 (988)
T PRK13889 434 RDVLVIDEAGMVGTRQLERVLSHAAD 459 (988)
T ss_pred CcEEEEECcccCCHHHHHHHHHhhhh
Confidence 47999999999999999999987775
No 391
>COG0218 Predicted GTPase [General function prediction only]
Probab=20.31 E-value=4.3e+02 Score=25.75 Aligned_cols=59 Identities=24% Similarity=0.188 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecC
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNR 213 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~ 213 (448)
.+.++.+.+.+.+|++.+.. +...|+.||==|-+...-.. .+..+++.-.|++|++|--
T Consensus 87 k~~~e~w~~~i~~YL~~R~~-L~~vvlliD~r~~~~~~D~e-m~~~l~~~~i~~~vv~tK~ 145 (200)
T COG0218 87 KEVKEKWKKLIEEYLEKRAN-LKGVVLLIDARHPPKDLDRE-MIEFLLELGIPVIVVLTKA 145 (200)
T ss_pred HHHHHHHHHHHHHHHhhchh-heEEEEEEECCCCCcHHHHH-HHHHHHHcCCCeEEEEEcc
Confidence 68889999998899877644 88899999999988663333 3445556667877777764
No 392
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=20.04 E-value=1.1e+02 Score=23.64 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhccceeech
Q psy1686 396 REQISAKVTEWREEGHSEKNRV 417 (448)
Q Consensus 396 R~~i~~~v~~~i~~g~aelv~~ 417 (448)
|+.|++.+++|.++|..++-++
T Consensus 42 r~tv~r~l~~l~~~g~I~~~~~ 63 (76)
T PF13545_consen 42 RETVSRILKRLKDEGIIEVKRG 63 (76)
T ss_dssp HHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHHHHCCCEEEcCC
Confidence 7789999999999999997776
Done!