Query psy1686
Match_columns 448
No_of_seqs 333 out of 1725
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 23:54:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1686.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1686hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c9o_A RUVB-like 1; hexameric 100.0 4.1E-47 1.4E-51 396.2 23.4 320 6-328 2-455 (456)
2 3uk6_A RUVB-like 2; hexameric 100.0 9.3E-45 3.2E-49 362.6 23.4 317 3-332 6-352 (368)
3 3pvs_A Replication-associated 99.9 8.1E-27 2.8E-31 243.8 12.8 213 28-308 14-242 (447)
4 1jr3_A DNA polymerase III subu 99.9 3.1E-21 1.1E-25 191.7 15.4 228 29-308 5-242 (373)
5 1sxj_C Activator 1 40 kDa subu 99.8 1.1E-21 3.8E-26 195.5 9.7 217 27-308 12-237 (340)
6 1a5t_A Delta prime, HOLB; zinc 99.8 4.1E-20 1.4E-24 184.8 14.1 193 53-287 11-209 (334)
7 3u61_B DNA polymerase accessor 99.8 1.5E-20 5E-25 185.2 9.0 207 26-308 12-235 (324)
8 1sxj_E Activator 1 40 kDa subu 99.8 2.3E-19 7.9E-24 177.9 15.3 220 29-290 3-244 (354)
9 1sxj_D Activator 1 41 kDa subu 99.8 4.7E-19 1.6E-23 174.7 14.9 221 27-308 24-261 (353)
10 2chq_A Replication factor C sm 99.8 4.7E-19 1.6E-23 171.7 13.3 212 28-308 5-224 (319)
11 1sxj_B Activator 1 37 kDa subu 99.8 4.8E-19 1.6E-23 172.0 12.7 211 28-308 9-229 (323)
12 1iqp_A RFCS; clamp loader, ext 99.8 1.4E-18 4.9E-23 168.9 14.2 212 27-308 12-232 (327)
13 1njg_A DNA polymerase III subu 99.7 3.3E-18 1.1E-22 156.3 11.0 227 29-308 12-249 (250)
14 2chg_A Replication factor C sm 99.7 1.1E-16 3.7E-21 145.0 16.6 208 31-308 8-224 (226)
15 1in4_A RUVB, holliday junction 99.7 1.7E-16 5.7E-21 158.6 19.2 215 30-310 15-250 (334)
16 2gno_A DNA polymerase III, gam 99.7 6.4E-18 2.2E-22 168.3 8.8 171 45-285 1-175 (305)
17 3pfi_A Holliday junction ATP-d 99.7 1.4E-16 4.9E-21 157.3 17.9 219 29-309 18-253 (338)
18 1hqc_A RUVB; extended AAA-ATPa 99.7 2.9E-15 9.9E-20 146.4 18.8 215 31-309 3-237 (324)
19 3te6_A Regulatory protein SIR3 99.6 2.7E-16 9.2E-21 158.0 7.9 127 175-310 132-315 (318)
20 2v1u_A Cell division control p 99.6 3.5E-15 1.2E-19 147.7 12.6 150 176-330 131-298 (387)
21 1g8p_A Magnesium-chelatase 38 99.6 2.4E-14 8.3E-19 141.1 14.8 132 176-310 145-322 (350)
22 1fnn_A CDC6P, cell division co 99.5 2E-13 6.7E-18 135.7 19.6 145 176-329 126-295 (389)
23 3bos_A Putative DNA replicatio 99.5 5.3E-14 1.8E-18 130.0 12.8 213 26-308 13-241 (242)
24 2qby_B CDC6 homolog 3, cell di 99.5 5.4E-14 1.9E-18 140.0 12.7 140 177-330 135-292 (384)
25 1sxj_A Activator 1 95 kDa subu 99.5 2.8E-14 9.5E-19 150.8 10.9 116 175-308 148-272 (516)
26 2z4s_A Chromosomal replication 99.5 2.6E-13 9E-18 141.0 18.0 123 176-311 195-333 (440)
27 1jr3_D DNA polymerase III, del 99.5 1E-13 3.5E-18 137.9 13.0 139 153-309 59-208 (343)
28 3syl_A Protein CBBX; photosynt 99.5 1.8E-13 6.2E-18 133.0 13.8 122 176-304 131-280 (309)
29 1l8q_A Chromosomal replication 99.5 2.4E-13 8.1E-18 134.0 14.5 123 176-312 99-242 (324)
30 1ofh_A ATP-dependent HSL prote 99.5 1.4E-13 4.6E-18 133.0 12.3 133 176-309 117-298 (310)
31 3h4m_A Proteasome-activating n 99.4 1.7E-12 5.6E-17 125.0 14.8 124 176-311 111-259 (285)
32 2qby_A CDC6 homolog 1, cell di 99.4 1E-12 3.5E-17 129.6 13.6 125 176-310 129-272 (386)
33 3vfd_A Spastin; ATPase, microt 99.4 8.7E-12 3E-16 126.6 20.0 214 30-310 105-365 (389)
34 2r44_A Uncharacterized protein 99.4 1.6E-12 5.6E-17 128.2 12.5 129 176-310 110-297 (331)
35 1um8_A ATP-dependent CLP prote 99.4 1.4E-12 4.7E-17 131.5 10.9 132 176-308 138-363 (376)
36 3b9p_A CG5977-PA, isoform A; A 99.3 2.1E-11 7E-16 118.1 17.1 122 175-309 113-271 (297)
37 3eie_A Vacuolar protein sortin 99.3 2.3E-11 7.8E-16 120.5 17.2 104 175-290 110-235 (322)
38 3k1j_A LON protease, ATP-depen 99.3 1E-11 3.5E-16 133.7 15.6 132 176-309 202-374 (604)
39 2qp9_X Vacuolar protein sortin 99.3 1.4E-10 4.8E-15 117.0 22.1 103 176-291 144-269 (355)
40 1d2n_A N-ethylmaleimide-sensit 99.3 1.5E-11 5E-16 118.3 11.8 210 17-289 9-248 (272)
41 3d8b_A Fidgetin-like protein 1 99.3 9.8E-11 3.3E-15 118.0 17.5 122 176-310 177-334 (357)
42 1lv7_A FTSH; alpha/beta domain 99.3 1.2E-10 3.9E-15 110.9 16.7 210 36-309 7-251 (257)
43 2qz4_A Paraplegin; AAA+, SPG7, 99.3 3.7E-11 1.3E-15 113.5 12.7 121 176-309 99-248 (262)
44 1xwi_A SKD1 protein; VPS4B, AA 99.3 3.7E-10 1.3E-14 112.4 20.4 190 36-290 7-230 (322)
45 3pxg_A Negative regulator of g 99.2 8.6E-12 3E-16 130.5 6.9 200 27-290 167-385 (468)
46 4fcw_A Chaperone protein CLPB; 99.2 3.2E-11 1.1E-15 116.9 10.4 114 176-289 120-277 (311)
47 3m6a_A ATP-dependent protease 99.2 6.4E-11 2.2E-15 126.3 12.1 131 176-308 176-339 (543)
48 2bjv_A PSP operon transcriptio 99.1 7E-11 2.4E-15 112.9 8.8 120 176-303 101-250 (265)
49 1r6b_X CLPA protein; AAA+, N-t 99.1 9.5E-11 3.2E-15 128.7 10.1 227 27-310 173-433 (758)
50 2r62_A Cell division protease 99.1 6.2E-11 2.1E-15 113.1 7.5 121 176-309 104-252 (268)
51 3pxi_A Negative regulator of g 99.1 4.7E-10 1.6E-14 123.5 13.8 112 176-287 580-721 (758)
52 2zan_A Vacuolar protein sortin 99.1 7.6E-10 2.6E-14 115.0 14.6 103 175-290 227-352 (444)
53 2ce7_A Cell division protein F 99.1 1.2E-09 4.3E-14 115.0 15.9 212 35-310 10-256 (476)
54 1qvr_A CLPB protein; coiled co 99.1 6.3E-11 2.2E-15 132.3 6.1 203 29-290 159-392 (854)
55 3f9v_A Minichromosome maintena 99.1 3.8E-10 1.3E-14 121.8 11.0 133 176-310 392-587 (595)
56 4b4t_J 26S protease regulatory 99.1 4.4E-09 1.5E-13 108.8 18.1 207 36-310 143-389 (405)
57 1r6b_X CLPA protein; AAA+, N-t 99.0 8.2E-10 2.8E-14 121.2 13.1 113 176-288 558-713 (758)
58 3nbx_X ATPase RAVA; AAA+ ATPas 99.0 1.1E-09 3.9E-14 116.0 13.1 119 176-304 110-280 (500)
59 1ojl_A Transcriptional regulat 99.0 1.2E-09 3.9E-14 108.1 11.6 120 177-304 98-246 (304)
60 3hws_A ATP-dependent CLP prote 99.0 4.9E-10 1.7E-14 112.4 8.5 80 229-308 239-347 (363)
61 4b4t_M 26S protease regulatory 99.0 4.5E-09 1.5E-13 109.7 15.8 207 35-309 175-421 (434)
62 3hu3_A Transitional endoplasmi 99.0 3.3E-09 1.1E-13 112.0 14.9 106 176-293 298-425 (489)
63 3pxi_A Negative regulator of g 99.0 8.3E-10 2.8E-14 121.5 10.5 200 27-290 167-385 (758)
64 1qvr_A CLPB protein; coiled co 99.0 4.2E-10 1.4E-14 125.6 8.1 114 176-289 661-818 (854)
65 3cf0_A Transitional endoplasmi 99.0 3.5E-09 1.2E-13 103.9 13.6 191 36-291 10-237 (301)
66 4b4t_L 26S protease subunit RP 99.0 1.2E-08 3.9E-13 106.6 18.0 207 35-309 175-421 (437)
67 4b4t_I 26S protease regulatory 99.0 1.2E-08 4.1E-13 106.3 17.4 207 35-309 176-422 (437)
68 4b4t_H 26S protease regulatory 99.0 1.6E-08 5.5E-13 106.1 18.3 207 35-309 203-449 (467)
69 1w5s_A Origin recognition comp 98.9 5.5E-09 1.9E-13 104.6 12.4 124 176-309 139-292 (412)
70 1jbk_A CLPB protein; beta barr 98.9 3.8E-10 1.3E-14 99.4 3.3 176 27-254 9-194 (195)
71 1ixz_A ATP-dependent metallopr 98.9 3.3E-08 1.1E-12 93.7 16.3 123 175-307 108-253 (254)
72 4b4t_K 26S protease regulatory 98.9 3.4E-08 1.2E-12 102.9 16.4 207 35-309 166-413 (428)
73 1iy2_A ATP-dependent metallopr 98.8 1.1E-07 3.8E-12 91.6 16.7 126 175-307 132-277 (278)
74 1g41_A Heat shock protein HSLU 98.8 4E-08 1.4E-12 102.7 14.2 133 176-310 251-433 (444)
75 2dhr_A FTSH; AAA+ protein, hex 98.8 1.2E-08 4.1E-13 108.2 10.0 126 175-310 123-271 (499)
76 2p65_A Hypothetical protein PF 98.6 1.6E-08 5.4E-13 89.2 2.4 165 27-246 9-187 (187)
77 2c9o_A RUVB-like 1; hexameric 98.4 8.3E-08 2.8E-12 99.7 1.6 103 340-442 213-334 (456)
78 3f8t_A Predicted ATPase involv 98.3 5.5E-06 1.9E-10 87.5 14.7 130 176-310 301-483 (506)
79 3dzd_A Transcriptional regulat 98.2 6E-07 2E-11 91.1 4.8 112 176-290 223-361 (368)
80 3co5_A Putative two-component 98.2 2.1E-06 7.1E-11 75.0 6.6 60 176-245 76-142 (143)
81 1ypw_A Transitional endoplasmi 98.2 1.9E-07 6.6E-12 104.0 -1.0 194 36-291 472-699 (806)
82 3t15_A Ribulose bisphosphate c 98.1 2E-05 6.8E-10 77.1 13.1 107 153-277 82-221 (293)
83 3n70_A Transport activator; si 98.1 7.2E-06 2.5E-10 71.6 8.2 64 177-245 78-144 (145)
84 3cf2_A TER ATPase, transitiona 98.1 1.5E-05 5E-10 89.0 11.5 190 36-290 199-422 (806)
85 1ypw_A Transitional endoplasmi 98.0 8.4E-05 2.9E-09 82.8 15.8 102 176-289 298-421 (806)
86 3cf2_A TER ATPase, transitiona 97.7 4.3E-05 1.5E-09 85.2 7.8 189 36-290 472-698 (806)
87 1ny5_A Transcriptional regulat 97.7 0.00011 3.7E-09 74.8 9.7 122 176-305 232-382 (387)
88 3uk6_A RUVB-like 2; hexameric 97.4 0.0001 3.5E-09 72.8 5.4 86 360-445 134-231 (368)
89 2x8a_A Nuclear valosin-contain 97.2 0.0037 1.3E-07 60.5 13.4 126 175-309 103-263 (274)
90 3ec2_A DNA replication protein 97.0 0.0036 1.2E-07 55.7 10.1 51 31-82 1-53 (180)
91 2kjq_A DNAA-related protein; s 97.0 0.0016 5.3E-08 57.5 7.2 52 176-238 84-140 (149)
92 4akg_A Glutathione S-transfera 96.8 0.0011 3.8E-08 82.2 6.5 77 176-256 1337-1429(2695)
93 2qen_A Walker-type ATPase; unk 96.7 0.0091 3.1E-07 57.5 10.7 103 176-282 129-245 (350)
94 2orw_A Thymidine kinase; TMTK, 96.3 0.0018 6.1E-08 59.2 3.2 60 176-246 77-140 (184)
95 2fna_A Conserved hypothetical 95.4 0.023 8E-07 54.6 6.9 105 176-284 138-251 (357)
96 2w58_A DNAI, primosome compone 95.0 0.014 4.7E-07 52.6 3.5 56 26-82 11-69 (202)
97 3upu_A ATP-dependent DNA helic 93.5 0.075 2.6E-06 54.8 5.6 53 21-82 7-60 (459)
98 1taf_A TFIID TBP associated fa 92.7 0.45 1.5E-05 37.1 7.6 58 250-311 7-67 (68)
99 2qgz_A Helicase loader, putati 89.6 0.1 3.4E-06 51.3 1.3 57 25-82 109-167 (308)
100 1u0j_A DNA replication protein 87.7 0.52 1.8E-05 45.9 5.0 76 177-255 150-248 (267)
101 1ku5_A HPHA, archaeal histon; 86.9 2.4 8.3E-05 32.6 7.5 57 246-307 8-68 (70)
102 1ye8_A Protein THEP1, hypothet 84.7 0.83 2.8E-05 41.0 4.4 68 176-254 100-172 (178)
103 4ag6_A VIRB4 ATPase, type IV s 83.4 5.1 0.00017 39.8 10.0 92 175-271 262-360 (392)
104 1tzy_D Histone H4-VI; histone- 81.1 4.2 0.00014 33.8 7.0 60 245-309 30-93 (103)
105 2yfw_B Histone H4, H4; cell cy 80.9 4.4 0.00015 33.7 7.1 60 245-309 30-93 (103)
106 4dra_E Centromere protein X; D 79.8 3.2 0.00011 33.6 5.6 70 226-309 10-79 (84)
107 3b0c_T CENP-T, centromere prot 79.7 5.1 0.00017 33.9 7.1 56 249-309 12-71 (111)
108 1id3_B Histone H4; nucleosome 76.8 6.5 0.00022 32.7 6.9 60 245-309 29-92 (102)
109 3vkg_A Dynein heavy chain, cyt 74.9 5.1 0.00017 51.1 8.1 76 176-255 1375-1466(3245)
110 2hue_C Histone H4; mini beta s 74.8 8.1 0.00028 30.8 6.7 58 247-309 13-74 (84)
111 3b0c_W CENP-W, centromere prot 72.8 12 0.00043 29.1 7.2 58 249-310 9-70 (76)
112 1f1e_A Histone fold protein; a 72.4 14 0.00049 33.0 8.4 58 248-310 86-147 (154)
113 3sfz_A APAF-1, apoptotic pepti 72.0 13 0.00046 41.5 10.0 40 40-82 123-162 (1249)
114 1f1e_A Histone fold protein; a 68.1 17 0.00059 32.4 7.9 58 247-309 7-69 (154)
115 4g92_C HAPE; transcription fac 66.1 21 0.00071 30.3 7.8 60 245-308 42-105 (119)
116 2r2a_A Uncharacterized protein 65.9 2.8 9.6E-05 38.5 2.4 57 176-244 88-152 (199)
117 3e1s_A Exodeoxyribonuclease V, 63.7 5.2 0.00018 42.6 4.3 26 175-200 279-304 (574)
118 3v9r_A MHF1, uncharacterized p 63.6 27 0.00094 28.4 7.6 45 259-307 33-77 (90)
119 3b0b_C CENP-X, centromere prot 63.1 38 0.0013 27.0 8.3 72 227-312 7-79 (81)
120 1f6v_A DNA transposition prote 63.0 3.3 0.00011 34.0 2.0 65 241-308 9-77 (91)
121 1b67_A Protein (histone HMFA); 62.8 30 0.001 26.0 7.4 46 259-308 20-65 (68)
122 1h3o_B Transcription initiatio 61.9 34 0.0012 27.0 7.7 63 245-311 6-72 (76)
123 2iut_A DNA translocase FTSK; n 61.4 15 0.00052 39.3 7.4 69 176-255 344-420 (574)
124 1w4r_A Thymidine kinase; type 60.3 8 0.00027 35.8 4.4 49 177-237 93-144 (195)
125 3kw6_A 26S protease regulatory 60.1 27 0.00091 26.6 6.8 64 247-310 5-73 (78)
126 1xx6_A Thymidine kinase; NESG, 58.3 11 0.00039 34.1 5.0 53 176-237 82-135 (191)
127 1n1j_B NF-YC; histone-like PAI 58.2 30 0.001 28.1 7.1 59 246-308 21-83 (97)
128 1n1j_A NF-YB; histone-like PAI 57.5 72 0.0025 25.5 10.2 57 249-309 13-74 (93)
129 4akg_A Glutathione S-transfera 57.3 1.4E+02 0.0048 37.8 15.7 105 177-289 699-839 (2695)
130 4dra_A Centromere protein S; D 57.2 48 0.0016 28.1 8.3 46 259-308 48-93 (113)
131 2fz4_A DNA repair protein RAD2 57.0 8.3 0.00028 35.7 3.9 24 176-199 193-216 (237)
132 1taf_B TFIID TBP associated fa 56.8 66 0.0023 24.9 9.1 61 244-308 6-69 (70)
133 2j9r_A Thymidine kinase; TK1, 53.7 11 0.00038 35.3 4.2 53 176-237 102-155 (214)
134 3b0b_B CENP-S, centromere prot 53.7 41 0.0014 28.2 7.3 46 259-308 40-85 (107)
135 2byk_B Chrac-14; nucleosome sl 53.2 66 0.0023 27.6 8.8 57 249-309 14-75 (128)
136 3e2i_A Thymidine kinase; Zn-bi 53.1 12 0.00042 35.2 4.4 25 176-200 102-126 (219)
137 2b8t_A Thymidine kinase; deoxy 52.5 17 0.00057 34.0 5.2 53 176-237 90-143 (223)
138 3b6e_A Interferon-induced heli 49.8 12 0.00041 32.8 3.6 13 177-189 164-176 (216)
139 2j48_A Two-component sensor ki 49.5 48 0.0017 24.9 6.8 65 176-255 46-113 (119)
140 2qv0_A Protein MRKE; structura 48.7 31 0.0011 27.7 5.8 67 176-255 56-122 (143)
141 1jfi_B DR1 protein, transcript 47.8 1.5E+02 0.0051 27.0 10.6 47 259-309 34-80 (179)
142 1rif_A DAR protein, DNA helica 47.7 6.6 0.00023 36.9 1.6 23 177-199 227-249 (282)
143 2v6i_A RNA helicase; membrane, 47.7 16 0.00054 37.0 4.5 23 177-199 95-120 (431)
144 1s8n_A Putative antiterminator 47.2 80 0.0027 27.3 8.7 68 176-255 59-126 (205)
145 2krk_A 26S protease regulatory 46.8 53 0.0018 25.8 6.7 65 246-310 12-81 (86)
146 3vh5_A CENP-S; histone fold, c 45.8 94 0.0032 27.3 8.5 46 259-308 40-85 (140)
147 3h5i_A Response regulator/sens 44.2 60 0.0021 26.0 6.9 69 175-255 50-119 (140)
148 3aji_B S6C, proteasome (prosom 43.7 39 0.0013 25.8 5.4 65 246-310 2-71 (83)
149 3i42_A Response regulator rece 42.3 59 0.002 25.4 6.4 67 176-255 48-117 (127)
150 3n53_A Response regulator rece 41.2 48 0.0017 26.5 5.8 68 176-255 47-117 (140)
151 1w36_D RECD, exodeoxyribonucle 40.8 16 0.00055 38.9 3.5 26 175-200 262-287 (608)
152 3llm_A ATP-dependent RNA helic 37.6 23 0.00079 32.2 3.6 12 177-188 178-189 (235)
153 3nhm_A Response regulator; pro 37.1 65 0.0022 25.3 6.0 67 176-255 48-117 (133)
154 3f6p_A Transcriptional regulat 37.1 42 0.0014 26.3 4.7 69 175-255 46-114 (120)
155 2a9o_A Response regulator; ess 37.1 31 0.0011 26.5 3.9 68 176-255 46-113 (120)
156 1mvo_A PHOP response regulator 37.0 73 0.0025 25.1 6.3 68 176-255 48-116 (136)
157 2oca_A DAR protein, ATP-depend 36.6 16 0.00055 37.1 2.6 23 177-199 227-249 (510)
158 3cu5_A Two component transcrip 36.4 1E+02 0.0036 24.7 7.2 68 176-255 50-118 (141)
159 2f8n_G Core histone macro-H2A. 36.3 1.2E+02 0.0043 25.6 7.7 60 245-308 23-86 (120)
160 1tzy_A Histone H2A-IV; histone 34.8 1.3E+02 0.0043 25.9 7.6 60 245-308 26-89 (129)
161 1tue_A Replication protein E1; 34.5 15 0.00052 34.5 1.8 58 177-243 105-177 (212)
162 2nqb_C Histone H2A; nucleosome 33.8 1.4E+02 0.0049 25.4 7.7 60 245-308 24-87 (123)
163 1vec_A ATP-dependent RNA helic 32.7 24 0.00083 30.8 2.8 24 177-200 148-172 (206)
164 1zh2_A KDP operon transcriptio 32.7 33 0.0011 26.4 3.4 68 176-255 46-113 (121)
165 3cg4_A Response regulator rece 32.7 1.1E+02 0.0036 24.3 6.6 68 176-255 52-122 (142)
166 3vlf_B 26S protease regulatory 32.5 1.2E+02 0.004 23.7 6.6 47 264-310 25-71 (88)
167 3h1t_A Type I site-specific re 32.3 20 0.0007 37.3 2.6 32 176-207 303-334 (590)
168 2f8n_K Histone H2A type 1; nuc 32.1 1.2E+02 0.004 26.9 7.1 60 245-308 45-108 (149)
169 3o8b_A HCV NS3 protease/helica 32.0 37 0.0013 36.9 4.6 27 176-202 319-345 (666)
170 1jfi_A Transcription regulator 31.3 61 0.0021 26.4 4.8 59 246-308 13-75 (98)
171 1g5t_A COB(I)alamin adenosyltr 30.6 84 0.0029 28.8 6.1 44 176-237 121-171 (196)
172 1zgz_A Torcad operon transcrip 30.1 44 0.0015 25.8 3.7 68 176-255 47-114 (122)
173 1t6n_A Probable ATP-dependent 29.5 33 0.0011 30.3 3.2 12 177-188 160-171 (220)
174 1i3c_A Response regulator RCP1 29.4 44 0.0015 27.3 3.7 69 175-255 61-132 (149)
175 2i3b_A HCR-ntpase, human cance 29.3 58 0.002 29.1 4.8 28 175-202 105-135 (189)
176 3gl9_A Response regulator; bet 28.8 49 0.0017 26.0 3.8 69 175-255 46-117 (122)
177 3h1g_A Chemotaxis protein CHEY 28.7 50 0.0017 26.1 3.9 68 176-255 52-122 (129)
178 1k68_A Phytochrome response re 28.1 49 0.0017 26.0 3.7 69 175-255 55-126 (140)
179 1s2m_A Putative ATP-dependent 27.7 25 0.00085 34.0 2.1 23 177-199 165-187 (400)
180 1id3_C Histone H2A.1; nucleoso 27.6 1.2E+02 0.0041 26.2 6.2 60 245-308 26-89 (131)
181 1k66_A Phytochrome response re 27.4 50 0.0017 26.3 3.7 69 175-255 62-133 (149)
182 3cg0_A Response regulator rece 26.9 51 0.0018 26.1 3.6 68 176-255 55-123 (140)
183 2fna_A Conserved hypothetical 26.8 32 0.0011 32.3 2.7 41 33-82 5-45 (357)
184 1wp9_A ATP-dependent RNA helic 26.7 51 0.0018 31.9 4.2 25 176-200 126-151 (494)
185 3vkw_A Replicase large subunit 26.0 72 0.0025 33.0 5.3 25 176-200 235-259 (446)
186 2fwr_A DNA repair protein RAD2 26.0 34 0.0012 34.3 2.8 24 176-199 193-216 (472)
187 1dbw_A Transcriptional regulat 25.7 85 0.0029 24.4 4.7 69 175-255 47-116 (126)
188 2oxc_A Probable ATP-dependent 25.0 21 0.00072 32.2 1.0 11 177-187 168-178 (230)
189 3iuy_A Probable ATP-dependent 25.0 18 0.0006 32.5 0.4 12 177-188 169-180 (228)
190 1xhf_A DYE resistance, aerobic 24.8 55 0.0019 25.3 3.4 68 176-255 48-115 (123)
191 4e7p_A Response regulator; DNA 24.4 1.1E+02 0.0037 24.8 5.3 68 176-255 67-135 (150)
192 2qen_A Walker-type ATPase; unk 24.4 47 0.0016 31.1 3.3 41 35-82 6-46 (350)
193 2wv9_A Flavivirin protease NS2 24.0 57 0.0019 35.3 4.2 23 177-199 334-359 (673)
194 3heb_A Response regulator rece 23.8 70 0.0024 26.0 4.0 69 175-255 59-130 (152)
195 2gxq_A Heat resistant RNA depe 23.5 23 0.00078 30.9 0.9 12 177-188 146-157 (207)
196 1f66_C Histone H2A.Z; nucleoso 23.4 2.1E+02 0.0073 24.4 7.0 60 245-308 28-92 (128)
197 1mb3_A Cell division response 23.4 1.3E+02 0.0044 23.0 5.4 68 176-255 46-116 (124)
198 3klo_A Transcriptional regulat 23.4 1.1E+02 0.0039 26.8 5.6 69 175-255 54-124 (225)
199 2jlq_A Serine protease subunit 23.4 62 0.0021 32.7 4.2 14 177-190 112-125 (451)
200 4dad_A Putative pilus assembly 23.2 2.8E+02 0.0094 21.9 7.6 68 176-255 68-136 (146)
201 2rdm_A Response regulator rece 23.2 2.2E+02 0.0074 22.0 6.7 63 176-255 51-118 (132)
202 2qzj_A Two-component response 22.9 62 0.0021 26.0 3.4 68 176-255 49-116 (136)
203 2zay_A Response regulator rece 22.9 82 0.0028 25.2 4.2 68 176-255 53-123 (147)
204 3gt7_A Sensor protein; structu 22.6 74 0.0025 26.1 3.9 69 175-255 51-122 (154)
205 3hdg_A Uncharacterized protein 22.6 1.3E+02 0.0043 23.7 5.3 69 176-255 52-120 (137)
206 3b2n_A Uncharacterized protein 22.5 1.4E+02 0.0046 23.6 5.4 68 176-255 50-118 (133)
207 2jss_A Chimera of histone H2B. 22.5 3E+02 0.01 24.9 8.3 60 249-312 8-71 (192)
208 3a10_A Response regulator; pho 22.4 1.3E+02 0.0045 22.7 5.2 66 176-255 46-112 (116)
209 2r25_B Osmosensing histidine p 22.3 75 0.0026 25.3 3.8 68 176-255 53-122 (133)
210 2gwr_A DNA-binding response re 21.9 1.4E+02 0.0047 26.5 5.9 68 176-255 50-117 (238)
211 1srr_A SPO0F, sporulation resp 21.9 1E+02 0.0035 23.8 4.5 68 176-255 48-116 (124)
212 3q9s_A DNA-binding response re 21.9 82 0.0028 28.6 4.4 68 176-255 82-149 (249)
213 3hdv_A Response regulator; PSI 21.9 1.4E+02 0.0047 23.5 5.3 68 176-255 53-122 (136)
214 1ys7_A Transcriptional regulat 21.7 2.3E+02 0.008 24.5 7.3 68 176-255 52-120 (233)
215 1yks_A Genome polyprotein [con 21.6 60 0.002 32.8 3.7 13 177-189 101-113 (440)
216 3jte_A Response regulator rece 21.5 1.6E+02 0.0056 23.2 5.8 69 175-255 49-118 (143)
217 3eul_A Possible nitrate/nitrit 21.5 97 0.0033 25.1 4.4 68 176-255 62-130 (152)
218 3dkp_A Probable ATP-dependent 21.4 30 0.001 31.3 1.3 13 177-189 177-189 (245)
219 2byk_A Chrac-16; nucleosome sl 21.3 1.1E+02 0.0038 26.6 4.9 46 259-308 38-84 (140)
220 2whx_A Serine protease/ntpase/ 21.2 80 0.0027 33.7 4.7 15 176-190 278-292 (618)
221 3cnb_A DNA-binding response re 20.7 79 0.0027 25.0 3.6 68 176-255 55-125 (143)
222 3vkg_A Dynein heavy chain, cyt 20.3 2.3E+02 0.0078 36.6 9.0 112 177-289 658-799 (3245)
223 3t6k_A Response regulator rece 20.1 1.1E+02 0.0036 24.5 4.3 68 176-255 49-119 (136)
No 1
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=100.00 E-value=4.1e-47 Score=396.18 Aligned_cols=320 Identities=40% Similarity=0.712 Sum_probs=253.9
Q ss_pred ccccccccccccccccccCccCCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hh
Q psy1686 6 KVQEVREITRVERVGAHSHIRGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KK 84 (448)
Q Consensus 6 ~~~~~~~~~~~~~~~~hsHi~glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~ 84 (448)
++.||++.++.+|+++||||+|+|+++..+|++.++++|||++++++...+.++++.|+.++.-+.++|||.+|||+ |+
T Consensus 2 ~~~~~~~~~~~~~~~~~s~i~~~~l~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 2 KIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp -------CHHHHHHHTTTTCCSCCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHH
T ss_pred CcccccccccccchhhhhcccCCCCCcccChhhchhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHH
Confidence 56789998899999999999999999999999989999999999999999999999998874348899999669976 33
Q ss_pred -hhhhcc-------------------------------------------------------------------------
Q psy1686 85 -ISTATG------------------------------------------------------------------------- 90 (448)
Q Consensus 85 -I~~~~g------------------------------------------------------------------------- 90 (448)
+....|
T Consensus 82 ala~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l 161 (456)
T 2c9o_A 82 AIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGL 161 (456)
T ss_dssp HHHHHHCTTSCEEEEEGGGGCCSSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEE
T ss_pred HHHHHhCCCceEEEEeHHHHHHHhhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHH
Confidence 111111
Q ss_pred -------------------------------------Ccc--------ccccCCCccCCCCccccCCCcccceeeeeecc
Q psy1686 91 -------------------------------------REE--------EPDYDGWLADVTKDLRCPDGELQKRKTVVHTV 125 (448)
Q Consensus 91 -------------------------------------k~~--------a~~~d~~~~~~~~fv~~p~ge~~k~kei~~~v 125 (448)
... ...||. +...|+|+|.+++.+++++.+.+
T Consensus 162 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~---~~~~~v~~p~~~~~~R~~il~~~ 238 (456)
T 2c9o_A 162 KTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDL---EAEEYVPLPKGDVHKKKEIIQDV 238 (456)
T ss_dssp EETTEEEEEEECHHHHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSC---SSSSEECCCCSCSEEEEEEEEEE
T ss_pred hccccchhHhhhHHHHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCc---ceeEecCCCchhHHHHHHHHHHH
Confidence 000 011221 11358999999999999999999
Q ss_pred chhhhhhhcccccc---chhhhcC----CCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHh
Q psy1686 126 TLHEIDVINSRTHG---FLALFAG----DTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRA 198 (448)
Q Consensus 126 tLheiD~~nsr~~g---~~a~~~~----~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~ 198 (448)
++|++|.++++++| +.+++.+ .+++|+.++|+.+++...+|.++|..++.|+|+||||+|+|+.+++++|+|+
T Consensus 239 ~~~dl~~~a~~t~ggadl~~l~~~i~~p~~~~I~~~lr~~I~~~l~~~~~~g~~~v~~~VliIDEa~~l~~~a~~aLlk~ 318 (456)
T 2c9o_A 239 TLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRA 318 (456)
T ss_dssp EHHHHHHTC-----------------------------CHHHHHHHHHHHTTSEEEEECEEEEESGGGCBHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHhccccccceEEEEechhhcCHHHHHHHHHH
Confidence 99999999999884 5556554 5789999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCeEEEEecCceeEeeccc-cCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHc
Q psy1686 199 LESEMSPVVITATNRGVTKIRGTA-YSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIA 271 (448)
Q Consensus 199 lEe~~~pi~IlaT~~~i~lI~~Tt-enp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~a 271 (448)
+|+++.++||++||.++++|++|+ .++++++|++++|||++++|.||+.+++.++|+.|+ ++++++.+|+++|
T Consensus 319 lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a 398 (456)
T 2c9o_A 319 LESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIG 398 (456)
T ss_dssp TTSTTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH
T ss_pred hhccCCCEEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 999999999999999999999996 778899999999999999999999999999999876 8999999999997
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhcchhHHHHHHHHHHhhhh
Q psy1686 272 LDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYM 328 (448)
Q Consensus 272 ~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~D~~~s~~~L~~~~~~~l 328 (448)
.+||+|+|+++|+.|..+|..++...|+.++|++++++|+|.++|+++|++++..|+
T Consensus 399 ~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d~~~~~~~~~~~~~~~~ 455 (456)
T 2c9o_A 399 TKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYDAKSSAKILADQQDKYM 455 (456)
T ss_dssp HHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSCCHHHHHHHHHC------
T ss_pred cCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhcChHHHHHHHHHHHHhcc
Confidence 679999999999999888876778899999999999999999999999998887765
No 2
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=100.00 E-value=9.3e-45 Score=362.60 Aligned_cols=317 Identities=63% Similarity=0.995 Sum_probs=237.4
Q ss_pred cccccccccccccccccccccCccCCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch
Q psy1686 3 AAAKVQEVREITRVERVGAHSHIRGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV 82 (448)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~hsHi~glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt 82 (448)
|.++++++++.++++|+++||||+||||++.++|+..++++|||++++++...+.++++.++.++..+.++|||..|||+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~ 85 (368)
T 3uk6_A 6 ATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTA 85 (368)
T ss_dssp ------------------CCTTCCSCCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHH
T ss_pred eeeeehhccccchhhccchhhhhhccCcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHH
Confidence 46788899999999999999999999999999999989999999999999999999999999886678999999559976
Q ss_pred -hh-hhhhccCccccccCCCccCCCCccccCCCccc---------------------ceeeeeeccchhhhhhhcccccc
Q psy1686 83 -KK-ISTATGREEEPDYDGWLADVTKDLRCPDGELQ---------------------KRKTVVHTVTLHEIDVINSRTHG 139 (448)
Q Consensus 83 -~~-I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~---------------------k~kei~~~vtLheiD~~nsr~~g 139 (448)
++ +....+. ...|+.++++++. -+.++.+.+++|++|+.|+++.|
T Consensus 86 la~~la~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~ 153 (368)
T 3uk6_A 86 IAMGMAQALGP------------DTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQG 153 (368)
T ss_dssp HHHHHHHHHCS------------SCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----
T ss_pred HHHHHHHHhcc------------cCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhccccc
Confidence 54 2222220 1123322222211 11246778999999999999999
Q ss_pred chhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEee
Q psy1686 140 FLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIR 219 (448)
Q Consensus 140 ~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~ 219 (448)
+.+++.|..+++.+++|+.+..+...+...|+....|+||||||+|+|+.+.++.|++++|+++.|+++++|+.++.+|+
T Consensus 154 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~ 233 (368)
T 3uk6_A 154 FLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIR 233 (368)
T ss_dssp CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBHHHHHHHHHHTTCTTCCEEEEEESCSEEECB
T ss_pred chhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccChHHHHHHHHHhhCcCCCeeeeecccceeeee
Confidence 98999999999999999999999888888887766689999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhhh
Q psy1686 220 GTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIALD-TSLRYAIQLITTASVVCRR 292 (448)
Q Consensus 220 ~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~-Gd~R~AL~lLe~a~~~a~~ 292 (448)
+|+.|+++.++++|+|||.++.|.||+.+++.+||+.++ ++++++++|++++ . ||+|+++++|+.|...|..
T Consensus 234 ~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~-~~G~~r~~~~ll~~a~~~A~~ 312 (368)
T 3uk6_A 234 GTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIG-LETSLRYAIQLITAASLVCRK 312 (368)
T ss_dssp TSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999766 9999999999999 7 9999999999999988866
Q ss_pred hCCCcccHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhc
Q psy1686 293 RKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMFDST 332 (448)
Q Consensus 293 ~~~~~It~e~V~~~~~lf~D~~~s~~~L~~~~~~~l~~~~ 332 (448)
++...|+.++|++++..|+|.+++.++++++++.|+|++.
T Consensus 313 ~~~~~It~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (368)
T 3uk6_A 313 RKGTEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFLFNEL 352 (368)
T ss_dssp TTCSSBCHHHHHHHHHHSBCHHHHHHHHC-----------
T ss_pred hCCCCCCHHHHHHHHHHhcCHHHHHHHHHHhhhhhhhhcC
Confidence 6778999999999999999999999999999999999987
No 3
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.94 E-value=8.1e-27 Score=243.81 Aligned_cols=213 Identities=16% Similarity=0.216 Sum_probs=169.4
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
-||++++||++ ++++|||+|+.+....|+++|+++++++ +.++|||..|||+ +++..+. .+ ..
T Consensus 14 ~pla~r~rP~~-l~~ivGq~~~~~~~~~L~~~i~~~~~~~--vLL~GppGtGKTtlAr~ia~~-------~~------~~ 77 (447)
T 3pvs_A 14 QPLAARMRPEN-LAQYIGQQHLLAAGKPLPRAIEAGHLHS--MILWGPPGTGKTTLAEVIARY-------AN------AD 77 (447)
T ss_dssp CCHHHHTCCCS-TTTCCSCHHHHSTTSHHHHHHHHTCCCE--EEEECSTTSSHHHHHHHHHHH-------TT------CE
T ss_pred CChHHHhCCCC-HHHhCCcHHHHhchHHHHHHHHcCCCcE--EEEECCCCCcHHHHHHHHHHH-------hC------CC
Confidence 58999999998 7999999999998899999999999966 8999999558876 6644222 11 13
Q ss_pred ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 107 DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
|+. +++...|. +++|+.+..+.... ..+ .++||||||||+
T Consensus 78 f~~------------------------------l~a~~~~~-----~~ir~~~~~a~~~~-~~~----~~~iLfIDEI~~ 117 (447)
T 3pvs_A 78 VER------------------------------ISAVTSGV-----KEIREAIERARQNR-NAG----RRTILFVDEVHR 117 (447)
T ss_dssp EEE------------------------------EETTTCCH-----HHHHHHHHHHHHHH-HTT----CCEEEEEETTTC
T ss_pred eEE------------------------------EEeccCCH-----HHHHHHHHHHHHhh-hcC----CCcEEEEeChhh
Confidence 444 22223343 78888887765433 233 369999999999
Q ss_pred CCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc--------
Q psy1686 187 LDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-------- 258 (448)
Q Consensus 187 L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra-------- 258 (448)
|++.+|+.|++.+|+ +.+++|++||+||++.++++|+|||.++.|+|++.+++..+|+.++
T Consensus 118 l~~~~q~~LL~~le~-----------~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~ 186 (447)
T 3pvs_A 118 FNKSQQDAFLPHIED-----------GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYG 186 (447)
T ss_dssp C------CCHHHHHT-----------TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSST
T ss_pred hCHHHHHHHHHHHhc-----------CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhc
Confidence 999999999999995 6678899999999999999999999999999999999999998532
Q ss_pred -----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhh--CCCcccHHHHHHHHH
Q psy1686 259 -----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRR--KATEICMEDIRKVYA 308 (448)
Q Consensus 259 -----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~--~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|.++++|+.+...+... +...||.++|+++++
T Consensus 187 ~~~~~i~~~al~~L~~~~-~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~ 242 (447)
T 3pvs_A 187 GQDIVLPDETRRAIAELV-NGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAG 242 (447)
T ss_dssp TSSEECCHHHHHHHHHHH-CSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHT
T ss_pred cccCcCCHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHh
Confidence 8999999999998 999999999999998876422 445799999999886
No 4
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.86 E-value=3.1e-21 Score=191.71 Aligned_cols=228 Identities=21% Similarity=0.249 Sum_probs=164.9
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCc
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKD 107 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~f 107 (448)
++.+..||+. ++++|||+++.+ .|.++++++++++ ...++||+..|||+ ++...+. ..+ ...+
T Consensus 5 ~l~~k~rp~~-~~~~vg~~~~~~---~L~~~l~~~~~~~-~~ll~G~~G~GKT~la~~la~~-------l~~----~~~~ 68 (373)
T 1jr3_A 5 VLARKWRPQT-FADVVGQEHVLT---ALANGLSLGRIHH-AYLFSGTRGVGKTSIARLLAKG-------LNC----ETGI 68 (373)
T ss_dssp CHHHHTCCCS-TTTSCSCHHHHH---HHHHHHHHTCCCS-EEEEESCTTSSHHHHHHHHHHH-------HSC----TTCS
T ss_pred HHHHhhCCCc-hhhccCcHHHHH---HHHHHHHhCCCCe-EEEEECCCCCCHHHHHHHHHHH-------hCC----CCCC
Confidence 5677899998 799999999975 5889999999877 34689998558876 4433221 111 1123
Q ss_pred cccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccC
Q psy1686 108 LRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVH 185 (448)
Q Consensus 108 v~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH 185 (448)
...|+|.|..|..+.. ..+++++|..+.. +. +++|+.+.... .....-.+.|+||||+|
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-----~~~~~l~~~~~-----~~~~~~~~~vliiDe~~ 129 (373)
T 1jr3_A 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRT---------KV-----EDTRDLLDNVQ-----YAPARGRFKVYLIDEVH 129 (373)
T ss_dssp CSSCCSSSHHHHHHHTSCCSSCEEEETTCSC---------CS-----SCHHHHHHHTT-----SCCSSSSSEEEEEECGG
T ss_pred CCCCCcccHHHHHHhccCCCceEEecccccC---------CH-----HHHHHHHHHHh-----hccccCCeEEEEEECcc
Confidence 3345566555544332 3344444433211 11 56666554321 11111135899999999
Q ss_pred CCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------
Q psy1686 186 MLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------ 258 (448)
Q Consensus 186 ~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------ 258 (448)
+++.+.++.|++.+|+++.+ +||++|+. +.+++++++|||.++.|.|++.+++.++|+.++
T Consensus 130 ~l~~~~~~~Ll~~le~~~~~~~~Il~~~~------------~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~ 197 (373)
T 1jr3_A 130 MLSRHSFNALLKTLEEPPEHVKFLLATTD------------PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 (373)
T ss_dssp GSCHHHHHHHHHHHHSCCSSEEEEEEESC------------GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred hhcHHHHHHHHHHHhcCCCceEEEEEeCC------------hHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999998765 66666665 457899999999999999999999999998654
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|.++++++.+..++ ...|+.++|+++.+
T Consensus 198 ~~~~a~~~l~~~~-~G~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~~ 242 (373)
T 1jr3_A 198 HEPRALQLLARAA-EGSLRDALSLTDQAIASG----DGQVSTQAVSAMLG 242 (373)
T ss_dssp BCHHHHHHHHHHS-SSCHHHHHHHHHHHHHHT----TTCBCHHHHHHHTT
T ss_pred CCHHHHHHHHHHC-CCCHHHHHHHHHHHHHhc----CCcccHHHHHHHhC
Confidence 8999999999999 999999999999886543 34699999988764
No 5
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.85 E-value=1.1e-21 Score=195.52 Aligned_cols=217 Identities=15% Similarity=0.175 Sum_probs=159.4
Q ss_pred CCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCC
Q psy1686 27 GLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVT 105 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~ 105 (448)
-.|+.+++||+. +++++||+++.+ .|...|++|++++ +.++||+..|||| +++.... .
T Consensus 12 ~~~~~~k~rp~~-~~~~~g~~~~~~---~L~~~i~~g~~~~--~ll~Gp~G~GKTtla~~la~~-------l-------- 70 (340)
T 1sxj_C 12 NLPWVEKYRPET-LDEVYGQNEVIT---TVRKFVDEGKLPH--LLFYGPPGTGKTSTIVALARE-------I-------- 70 (340)
T ss_dssp CCCHHHHTCCSS-GGGCCSCHHHHH---HHHHHHHTTCCCC--EEEECSSSSSHHHHHHHHHHH-------H--------
T ss_pred CCchHHHhCCCc-HHHhcCcHHHHH---HHHHHHhcCCCce--EEEECCCCCCHHHHHHHHHHH-------H--------
Confidence 368999999998 799999999864 5899999999988 8899999558876 5533221 1
Q ss_pred CccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcc-cccCeEEEEecc
Q psy1686 106 KDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKA-EIVPGVLFIDEV 184 (448)
Q Consensus 106 ~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~-~i~~~VLfIDEV 184 (448)
.|+.+. +.+.++++.+.+ |. +++|+.+..... .+.. .-.++|++|||+
T Consensus 71 ---~~~~~~----------~~~~~~~~~~~~---------~~-----~~ir~~i~~~~~----~~~~~~~~~~viiiDe~ 119 (340)
T 1sxj_C 71 ---YGKNYS----------NMVLELNASDDR---------GI-----DVVRNQIKDFAS----TRQIFSKGFKLIILDEA 119 (340)
T ss_dssp ---HTTSHH----------HHEEEECTTSCC---------SH-----HHHHTHHHHHHH----BCCSSSCSCEEEEETTG
T ss_pred ---cCCCcc----------ceEEEEcCcccc---------cH-----HHHHHHHHHHHh----hcccCCCCceEEEEeCC
Confidence 111110 111222222211 11 677776654321 1110 012599999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|+|+.++++.|++++|+++.. .||++||. +++++++++|||.++.|.|++.+++.++|..++
T Consensus 120 ~~l~~~~~~~L~~~le~~~~~~~~il~~n~------------~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~ 187 (340)
T 1sxj_C 120 DAMTNAAQNALRRVIERYTKNTRFCVLANY------------AHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKL 187 (340)
T ss_dssp GGSCHHHHHHHHHHHHHTTTTEEEEEEESC------------GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHhcCCCCeEEEEEecC------------ccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999998765 67777765 778999999999999999999999999888544
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++.+|++.+ +||+|.|+++|+.+...+...+...|+.++|.++.+
T Consensus 188 ~i~~~~~~~i~~~s-~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~ 237 (340)
T 1sxj_C 188 KLSPNAEKALIELS-NGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCG 237 (340)
T ss_dssp CBCHHHHHHHHHHH-TTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTT
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHhC
Confidence 9999999999999 999999999998765433211233699999987764
No 6
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.82 E-value=4.1e-20 Score=184.79 Aligned_cols=193 Identities=13% Similarity=0.057 Sum_probs=140.6
Q ss_pred hHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCcccceeeee--eccchhh
Q psy1686 53 AGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVV--HTVTLHE 129 (448)
Q Consensus 53 ~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~--~~vtLhe 129 (448)
...|.+++++|++++ ...++|||..|||+ ++..++ ...+. ...... |+|.|..|+.+. .+.++++
T Consensus 11 ~~~l~~~i~~~~~~~-a~L~~G~~G~GKt~~a~~la~-------~l~~~--~~~~~~--~c~~c~~c~~~~~~~~~d~~~ 78 (334)
T 1a5t_A 11 FEKLVASYQAGRGHH-ALLIQALPGMGDDALIYALSR-------YLLCQ--QPQGHK--SCGHCRGCQLMQAGTHPDYYT 78 (334)
T ss_dssp HHHHHHHHHTTCCCS-EEEEECCTTSCHHHHHHHHHH-------HHTCS--SCBTTB--CCSCSHHHHHHHHTCCTTEEE
T ss_pred HHHHHHHHHcCCcce-eEEEECCCCchHHHHHHHHHH-------HHhCC--CCCCCC--CCCCCHHHHHHhcCCCCCEEE
Confidence 356889999999976 35689999558875 553322 22220 001123 455555555443 3566777
Q ss_pred hhhhcc-ccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eE
Q psy1686 130 IDVINS-RTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSP-VV 207 (448)
Q Consensus 130 iD~~ns-r~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~ 207 (448)
++..+. +..|+ +++|+.++... .....| .++|++|||+|+|+.+++|+|+|++|+|+.. +|
T Consensus 79 ~~~~~~~~~~~i------------~~ir~l~~~~~-~~~~~~----~~kvviIdead~l~~~a~naLLk~lEep~~~~~~ 141 (334)
T 1a5t_A 79 LAPEKGKNTLGV------------DAVREVTEKLN-EHARLG----GAKVVWVTDAALLTDAAANALLKTLEEPPAETWF 141 (334)
T ss_dssp ECCCTTCSSBCH------------HHHHHHHHHTT-SCCTTS----SCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEE
T ss_pred EeccccCCCCCH------------HHHHHHHHHHh-hccccC----CcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEE
Confidence 665421 11111 67887665431 111122 3699999999999999999999999998865 77
Q ss_pred EEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-CCHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy1686 208 ITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-MQTDGLRVLTKIALDTSLRYAIQLITTA 286 (448)
Q Consensus 208 IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra-i~deal~~La~~a~~Gd~R~AL~lLe~a 286 (448)
|++|+. +.+++++++|||++++|+|++.+++.++|+.++ +++++++.+++.+ +||+|.|+++++.+
T Consensus 142 Il~t~~------------~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~l~~~s-~G~~r~a~~~l~~~ 208 (334)
T 1a5t_A 142 FLATRE------------PERLLATLRSRCRLHYLAPPPEQYAVTWLSREVTMSQDALLAALRLS-AGSPGAALALFQGD 208 (334)
T ss_dssp EEEESC------------GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHT-TTCHHHHHHTTSSH
T ss_pred EEEeCC------------hHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHc-CCCHHHHHHHhccc
Confidence 777776 678999999999999999999999999999887 9999999999999 99999999999876
Q ss_pred H
Q psy1686 287 S 287 (448)
Q Consensus 287 ~ 287 (448)
.
T Consensus 209 ~ 209 (334)
T 1a5t_A 209 N 209 (334)
T ss_dssp H
T ss_pred h
Confidence 4
No 7
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.82 E-value=1.5e-20 Score=185.21 Aligned_cols=207 Identities=15% Similarity=0.096 Sum_probs=143.0
Q ss_pred cCCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCC
Q psy1686 26 RGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADV 104 (448)
Q Consensus 26 ~glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~ 104 (448)
...++.+++||++ ++++|||+++.+ .|.+++++++++++ +.++|||..|||+ ++... +.++
T Consensus 12 ~~~~~~~k~rP~~-~~~ivg~~~~~~---~l~~~l~~~~~~~~-~L~~G~~G~GKT~la~~la-------~~l~------ 73 (324)
T 3u61_B 12 KEHILEQKYRPST-IDECILPAFDKE---TFKSITSKGKIPHI-ILHSPSPGTGKTTVAKALC-------HDVN------ 73 (324)
T ss_dssp TCSSHHHHSCCCS-TTTSCCCHHHHH---HHHHHHHTTCCCSE-EEECSSTTSSHHHHHHHHH-------HHTT------
T ss_pred ccchHHHhhCCCC-HHHHhCcHHHHH---HHHHHHHcCCCCeE-EEeeCcCCCCHHHHHHHHH-------HHhC------
Confidence 4568889999998 799999999974 58999999988873 3566767448875 44221 1111
Q ss_pred CCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 105 TKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 105 ~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
.+|+. +++.+ .+ .+.+|+.+..........| .++|+||||+
T Consensus 74 ~~~~~--------------------i~~~~----------~~-----~~~i~~~~~~~~~~~~~~~----~~~vliiDEi 114 (324)
T 3u61_B 74 ADMMF--------------------VNGSD----------CK-----IDFVRGPLTNFASAASFDG----RQKVIVIDEF 114 (324)
T ss_dssp EEEEE--------------------EETTT----------CC-----HHHHHTHHHHHHHBCCCSS----CEEEEEEESC
T ss_pred CCEEE--------------------Ecccc----------cC-----HHHHHHHHHHHHhhcccCC----CCeEEEEECC
Confidence 12222 22111 11 1667766655432221122 3699999999
Q ss_pred CCCC-HHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHH------
Q psy1686 185 HMLD-IECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKI------ 256 (448)
Q Consensus 185 H~L~-~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~------ 256 (448)
|+|+ ++++++|++.+|+++.. .||++||. +.+++++++|||.++.|++++.+|..+|++.
T Consensus 115 ~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~------------~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~ 182 (324)
T 3u61_B 115 DRSGLAESQRHLRSFMEAYSSNCSIIITANN------------IDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLT 182 (324)
T ss_dssp CCGGGHHHHHHHHHHHHHHGGGCEEEEEESS------------GGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHhCCCCcEEEEEeCC------------ccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999 99999999999998655 66666665 6689999999999999999999885444332
Q ss_pred -hc------CCH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 257 -RL------MQT-DGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 257 -Ra------i~d-eal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
.+ +++ +++++|++.+ +||+|.|++.|+.+. . ...||.++|+++..
T Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~-~gd~R~a~~~L~~~~--~----~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 183 EICKHEGIAIADMKVVAALVKKN-FPDFRKTIGELDSYS--S----KGVLDAGILSLVTN 235 (324)
T ss_dssp HHHHHHTCCBSCHHHHHHHHHHT-CSCTTHHHHHHHHHG--G----GTCBCC--------
T ss_pred HHHHHcCCCCCcHHHHHHHHHhC-CCCHHHHHHHHHHHh--c----cCCCCHHHHHHHhC
Confidence 22 778 9999999998 999999999999875 1 23588888887654
No 8
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.81 E-value=2.3e-19 Score=177.88 Aligned_cols=220 Identities=14% Similarity=0.134 Sum_probs=143.7
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHH-hcCCCCCCCcccccCCCCCcch-hhhh------hhccCccccccCCC
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMI-KEEVVMVWPCVMCGRGKNPQKV-KKIS------TATGREEEPDYDGW 100 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI-~~~ki~gpf~~~~G~ei~GKtt-~~I~------~~~gk~~a~~~d~~ 100 (448)
+..+..||++ ++++|||+++.+ .|.+++ +.++.++ ..++||+..|||| ++.. +..|.+. ++
T Consensus 3 ~w~~kyrP~~-~~~~vg~~~~~~---~l~~~~~~~~~~~~--~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~---~~-- 71 (354)
T 1sxj_E 3 LWVDKYRPKS-LNALSHNEELTN---FLKSLSDQPRDLPH--LLLYGPNGTGKKTRCMALLESIFGPGVYRLK---ID-- 71 (354)
T ss_dssp -CTTTTCCCS-GGGCCSCHHHHH---HHHTTTTCTTCCCC--EEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred cchhccCCCC-HHHhcCCHHHHH---HHHHHHhhCCCCCe--EEEECCCCCCHHHHHHHHHHHHcCCCCCeEE---ec--
Confidence 4678899999 799999999875 478888 8888877 8899999559987 4422 2223322 00
Q ss_pred ccCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHH------hCcccc
Q psy1686 101 LADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWRE------EGKAEI 174 (448)
Q Consensus 101 ~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~------~g~~~i 174 (448)
| ..+ ..|++.+..+..+.+. ...+++..+. +. .-...+|+.+......... .| ..-
T Consensus 72 -~--~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~----------~~--~~~~~~~~~i~~~~~~~~~~~~~~ls~-l~~ 133 (354)
T 1sxj_E 72 -V--RQF-VTASNRKLELNVVSSP-YHLEITPSDM----------GN--NDRIVIQELLKEVAQMEQVDFQDSKDG-LAH 133 (354)
T ss_dssp ------------------CCEECS-SEEEECCC----------------CCHHHHHHHHHHHTTTTC-------------
T ss_pred -c--eee-cccccccceeeeeccc-ceEEecHhhc----------CC--cchHHHHHHHHHHHHhccccccccccc-cCC
Confidence 0 011 1233332222222221 1112221110 11 0001466655543211100 01 011
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHH
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAI 253 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~I 253 (448)
.++|++|||+|+|+.+.++.|++++|+++.. .||++|+. +..++++++|||.+++|+|++.+++.++
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~------------~~~l~~~l~sR~~~~~~~~~~~~~~~~~ 201 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDS------------MSPIIAPIKSQCLLIRCPAPSDSEISTI 201 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESC------------SCSSCHHHHTTSEEEECCCCCHHHHHHH
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCC------------HHHHHHHHHhhceEEecCCcCHHHHHHH
Confidence 4689999999999999999999999998655 67777776 6679999999999999999999999999
Q ss_pred HHHhc------CC-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy1686 254 LKIRL------MQ-TDGLRVLTKIALDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 254 L~~Ra------i~-deal~~La~~a~~Gd~R~AL~lLe~a~~~a 290 (448)
|+..+ ++ +++++.|++.+ +||+|.|+++|+.+...+
T Consensus 202 l~~~~~~~~~~~~~~~~l~~i~~~~-~G~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 202 LSDVVTNERIQLETKDILKRIAQAS-NGNLRVSLLMLESMALNN 244 (354)
T ss_dssp HHHHHHHHTCEECCSHHHHHHHHHH-TTCHHHHHHHHTHHHHTT
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhC
Confidence 98655 78 99999999999 999999999999886543
No 9
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.80 E-value=4.7e-19 Score=174.70 Aligned_cols=221 Identities=14% Similarity=0.082 Sum_probs=154.1
Q ss_pred CCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhh-ccCccccccCCCccCC
Q psy1686 27 GLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTA-TGREEEPDYDGWLADV 104 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~-~gk~~a~~~d~~~~~~ 104 (448)
.+|+.+.++|++ +++++||+++.+ .|..+++.++.++ +.++|||..|||+ ++...+ .+.- ..+.
T Consensus 24 ~~~~~~k~~p~~-~~~i~g~~~~~~---~l~~~l~~~~~~~--~ll~G~~G~GKT~la~~la~~l~~~--~~~~------ 89 (353)
T 1sxj_D 24 QQPWVEKYRPKN-LDEVTAQDHAVT---VLKKTLKSANLPH--MLFYGPPGTGKTSTILALTKELYGP--DLMK------ 89 (353)
T ss_dssp --CHHHHTCCSS-TTTCCSCCTTHH---HHHHHTTCTTCCC--EEEECSTTSSHHHHHHHHHHHHHHH--HHHT------
T ss_pred CccHHHhcCCCC-HHHhhCCHHHHH---HHHHHHhcCCCCE--EEEECCCCCCHHHHHHHHHHHhCCC--cccc------
Confidence 368888999998 799999999875 4889999998877 8899999558876 442211 1100 0000
Q ss_pred CCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHH-------HhCcccccCe
Q psy1686 105 TKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWR-------EEGKAEIVPG 177 (448)
Q Consensus 105 ~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~-------~~g~~~i~~~ 177 (448)
..+..+ ++... .|. +.+|+.+........ ..+...-.++
T Consensus 90 ~~~~~~--------------------~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (353)
T 1sxj_D 90 SRILEL--------------------NASDE--RGI------------SIVREKVKNFARLTVSKPSKHDLENYPCPPYK 135 (353)
T ss_dssp TSEEEE--------------------CSSSC--CCH------------HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCE
T ss_pred cceEEE--------------------ccccc--cch------------HHHHHHHHHHhhhcccccchhhcccCCCCCce
Confidence 011111 11100 011 233333322111000 0000001357
Q ss_pred EEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHH
Q psy1686 178 VLFIDEVHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKI 256 (448)
Q Consensus 178 VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~ 256 (448)
|+||||+|+++...++.|++++|++... .||++++. +..++++++|||..+.|.|++.+++.++|..
T Consensus 136 vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~------------~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~ 203 (353)
T 1sxj_D 136 IIILDEADSMTADAQSALRRTMETYSGVTRFCLICNY------------VTRIIDPLASQCSKFRFKALDASNAIDRLRF 203 (353)
T ss_dssp EEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC------------GGGSCHHHHHHSEEEECCCCCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCc------------hhhCcchhhccCceEEeCCCCHHHHHHHHHH
Confidence 9999999999999999999999998765 56666665 6679999999999999999999999999986
Q ss_pred hc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCC-cccHHHHHHHHH
Q psy1686 257 RL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKAT-EICMEDIRKVYA 308 (448)
Q Consensus 257 Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~-~It~e~V~~~~~ 308 (448)
++ ++++++++|++.+ +||+|.|+++|+.+..++...+.. .|+.++|+++..
T Consensus 204 ~~~~~~~~i~~~~l~~l~~~~-~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 204 ISEQENVKCDDGVLERILDIS-AGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHTTTCCCCHHHHHHHHHHT-SSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHhCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 54 9999999999999 899999999999987765433322 699999998875
No 10
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.79 E-value=4.7e-19 Score=171.72 Aligned_cols=212 Identities=19% Similarity=0.204 Sum_probs=150.8
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.|+.+..+|+. +++++||+++.+ .|.+++++++.++ +.++||+.+|||+ ++...+. +.+ .+....
T Consensus 5 ~~~~~k~~p~~-~~~~~g~~~~~~---~l~~~l~~~~~~~--~ll~G~~G~GKt~la~~l~~~-------l~~-~~~~~~ 70 (319)
T 2chq_A 5 EIWVEKYRPRT-LDEVVGQDEVIQ---RLKGYVERKNIPH--LLFSGPPGTGKTATAIALARD-------LFG-ENWRDN 70 (319)
T ss_dssp -CTTTTTSCSS-GGGSCSCHHHHH---HHHTTTTTTCCCC--EEEESSSSSSHHHHHHHHHHH-------HHT-TCHHHH
T ss_pred ccHHHhcCCCC-HHHHhCCHHHHH---HHHHHHhCCCCCe--EEEECcCCcCHHHHHHHHHHH-------hcC-CcccCC
Confidence 47788999998 799999999875 4888999888777 8899999558875 4422111 000 000001
Q ss_pred ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 107 DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
|+ ++++.+.+ |. +.+|+.+..........+ -.++|+||||+|+
T Consensus 71 ~~--------------------~~~~~~~~---------~~-----~~~~~~~~~~~~~~~~~~---~~~~vliiDe~~~ 113 (319)
T 2chq_A 71 FI--------------------EMNASDER---------GI-----DVVRHKIKEFARTAPIGG---APFKIIFLDEADA 113 (319)
T ss_dssp CE--------------------EEETTSTT---------CT-----TTSSHHHHHHHHSCCSSS---CCCEEEEEETGGG
T ss_pred eE--------------------EEeCcccc---------Ch-----HHHHHHHHHHHhcCCCCC---CCceEEEEeCCCc
Confidence 11 12221111 11 334444433221111111 1368999999999
Q ss_pred CCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------C
Q psy1686 187 LDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------M 259 (448)
Q Consensus 187 L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i 259 (448)
++.++++.|++++|+++.. .||++|+. +.++++++.|||.++.|.|++.+++.++|..++ +
T Consensus 114 l~~~~~~~L~~~le~~~~~~~~i~~~~~------------~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i 181 (319)
T 2chq_A 114 LTADAQAALRRTMEMYSKSCRFILSCNY------------VSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKI 181 (319)
T ss_dssp SCHHHHHTTGGGTSSSSSSEEEEEEESC------------GGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCB
T ss_pred CCHHHHHHHHHHHHhcCCCCeEEEEeCC------------hhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999997765 56666655 567899999999999999999999999998655 8
Q ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 260 QTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 260 ~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+++++++|++.+ +||+|.+++.|+.+... ...|+.++|.++..
T Consensus 182 ~~~~l~~l~~~~-~G~~r~~~~~l~~~~~~-----~~~i~~~~v~~~~~ 224 (319)
T 2chq_A 182 TEDGLEALIYIS-GGDFRKAINALQGAAAI-----GEVVDADTIYQITA 224 (319)
T ss_dssp CHHHHHHHHHTT-TTCHHHHHHHHHHHHHS-----SSCBCHHHHHHHTT
T ss_pred CHHHHHHHHHHc-CCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHC
Confidence 999999999998 99999999999977532 34699999987764
No 11
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.79 E-value=4.8e-19 Score=171.97 Aligned_cols=211 Identities=17% Similarity=0.188 Sum_probs=152.9
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.|+.++.+|.. +++++||+++.+ .|.++++++++++ +.++||+..|||+ ++...+. +.+ + .
T Consensus 9 ~~~~~~~~p~~-~~~~~g~~~~~~---~l~~~l~~~~~~~--~ll~G~~G~GKt~la~~l~~~-------l~~---~--~ 70 (323)
T 1sxj_B 9 LPWVEKYRPQV-LSDIVGNKETID---RLQQIAKDGNMPH--MIISGMPGIGKTTSVHCLAHE-------LLG---R--S 70 (323)
T ss_dssp CCHHHHTCCSS-GGGCCSCTHHHH---HHHHHHHSCCCCC--EEEECSTTSSHHHHHHHHHHH-------HHG---G--G
T ss_pred CcHHHhcCCCC-HHHHHCCHHHHH---HHHHHHHcCCCCe--EEEECcCCCCHHHHHHHHHHH-------hcC---C--c
Confidence 57788899998 799999999975 4889999998877 8899999558875 4422111 100 0 0
Q ss_pred ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHH--hCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWRE--EGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~--~g~~~i~~~VLfIDEV 184 (448)
+ ...+.++|+.+.+ + .+.+|+.+......... .+ .+.|+||||+
T Consensus 71 ~----------------~~~~~~~~~~~~~---------~-----~~~i~~~~~~~~~~~~~~~~~----~~~viiiDe~ 116 (323)
T 1sxj_B 71 Y----------------ADGVLELNASDDR---------G-----IDVVRNQIKHFAQKKLHLPPG----KHKIVILDEA 116 (323)
T ss_dssp H----------------HHHEEEECTTSCC---------S-----HHHHHTHHHHHHHBCCCCCTT----CCEEEEEESG
T ss_pred c----------------cCCEEEecCcccc---------C-----hHHHHHHHHHHHhccccCCCC----CceEEEEECc
Confidence 0 0001111211111 1 15666655543211100 12 2689999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|+++.++++.|++++|+++.. .||++|+. +.++++++.|||.++.|.|++.+++.++|..++
T Consensus 117 ~~l~~~~~~~L~~~le~~~~~~~~il~~~~------------~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~ 184 (323)
T 1sxj_B 117 DSMTAGAQQALRRTMELYSNSTRFAFACNQ------------SNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDV 184 (323)
T ss_dssp GGSCHHHHHTTHHHHHHTTTTEEEEEEESC------------GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred ccCCHHHHHHHHHHHhccCCCceEEEEeCC------------hhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999998765 56666654 667899999999999999999999999998654
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+++++++.|++.+ +||+|.|+++|+.+.... ..|+.++|.++..
T Consensus 185 ~~~~~~~~~l~~~~-~G~~r~a~~~l~~~~~~~-----~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 185 KYTNDGLEAIIFTA-EGDMRQAINNLQSTVAGH-----GLVNADNVFKIVD 229 (323)
T ss_dssp CBCHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH-----SSBCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcC-----CCcCHHHHHHHHC
Confidence 8999999999999 999999999999875321 3699999988765
No 12
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.78 E-value=1.4e-18 Score=168.87 Aligned_cols=212 Identities=19% Similarity=0.249 Sum_probs=150.9
Q ss_pred CCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCC
Q psy1686 27 GLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVT 105 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~ 105 (448)
..|+.++.+|.+ +++++||+++.+. |.++++++++++ +.++||+..|||+ ++..... +.+ +
T Consensus 12 ~~~~~~k~~p~~-~~~~~g~~~~~~~---l~~~l~~~~~~~--~ll~G~~G~GKT~la~~l~~~-------l~~---~-- 73 (327)
T 1iqp_A 12 EKPWVEKYRPQR-LDDIVGQEHIVKR---LKHYVKTGSMPH--LLFAGPPGVGKTTAALALARE-------LFG---E-- 73 (327)
T ss_dssp TSCHHHHTCCCS-TTTCCSCHHHHHH---HHHHHHHTCCCE--EEEESCTTSSHHHHHHHHHHH-------HHG---G--
T ss_pred CCchhhccCCCC-HHHhhCCHHHHHH---HHHHHHcCCCCe--EEEECcCCCCHHHHHHHHHHH-------hcC---C--
Confidence 358888999998 7999999999754 789999998877 8899999558875 4422111 100 0
Q ss_pred CccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHh-CcccccCeEEEEecc
Q psy1686 106 KDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREE-GKAEIVPGVLFIDEV 184 (448)
Q Consensus 106 ~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~-g~~~i~~~VLfIDEV 184 (448)
.+. ..+.++++.+.+ |. +.+|+.+.......... + .++|+||||+
T Consensus 74 ~~~----------------~~~~~~~~~~~~--~~------------~~~~~~~~~~~~~~~~~~~----~~~vliiDe~ 119 (327)
T 1iqp_A 74 NWR----------------HNFLELNASDER--GI------------NVIREKVKEFARTKPIGGA----SFKIIFLDEA 119 (327)
T ss_dssp GHH----------------HHEEEEETTCHH--HH------------HTTHHHHHHHHHSCCGGGC----SCEEEEEETG
T ss_pred ccc----------------CceEEeeccccC--ch------------HHHHHHHHHHHhhCCcCCC----CCeEEEEeCC
Confidence 000 001112221111 11 33444443322111111 2 3689999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|+++.+.++.|++++|+++.. .||++++. +..+++++.|||.++.|.|++.+++.++|..++
T Consensus 120 ~~l~~~~~~~L~~~le~~~~~~~~i~~~~~------------~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~ 187 (327)
T 1iqp_A 120 DALTQDAQQALRRTMEMFSSNVRFILSCNY------------SSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL 187 (327)
T ss_dssp GGSCHHHHHHHHHHHHHTTTTEEEEEEESC------------GGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred CcCCHHHHHHHHHHHHhcCCCCeEEEEeCC------------ccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999997665 55555554 567899999999999999999999999998654
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|.++++|+.+... ...|+.++|..+..
T Consensus 188 ~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~-----~~~i~~~~v~~~~~ 232 (327)
T 1iqp_A 188 ELTEEGLQAILYIA-EGDMRRAINILQAAAAL-----DKKITDENVFMVAS 232 (327)
T ss_dssp EECHHHHHHHHHHH-TTCHHHHHHHHHHHHTT-----CSEECHHHHHHHTT
T ss_pred CCCHHHHHHHHHHC-CCCHHHHHHHHHHHHhc-----CCCCCHHHHHHHHC
Confidence 9999999999999 99999999999976432 23688888877654
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.75 E-value=3.3e-18 Score=156.27 Aligned_cols=227 Identities=21% Similarity=0.262 Sum_probs=150.8
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hh-hhhhccCccccccCCCccCCCC
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
++.+..+|+. +++++|+++..+. |.+.++.++.++ .+.++||+..|||+ ++ +....+ . ...
T Consensus 12 ~~~~~~~p~~-~~~~~g~~~~~~~---l~~~l~~~~~~~-~~ll~G~~G~GKT~l~~~~~~~~~--------~----~~~ 74 (250)
T 1njg_A 12 VLARKWRPQT-FADVVGQEHVLTA---LANGLSLGRIHH-AYLFSGTRGVGKTSIARLLAKGLN--------C----ETG 74 (250)
T ss_dssp CHHHHTCCCS-GGGCCSCHHHHHH---HHHHHHHTCCCS-EEEEECSTTSCHHHHHHHHHHHHH--------C----TTC
T ss_pred HHhhccCCcc-HHHHhCcHHHHHH---HHHHHHcCCCCe-EEEEECCCCCCHHHHHHHHHHHhc--------C----CCC
Confidence 4567788998 7999999998754 788888887654 46789998558876 33 222221 0 012
Q ss_pred ccccCCCcccceeeeeec--cchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVVHT--VTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~--vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
+...|++.+..+..+... .++..++.. . ..-.+++++.+.. . ......-.+.++||||+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~----~-~~~~~~~~~~vlviDe~ 135 (250)
T 1njg_A 75 ITATPCGVCDNCREIEQGRFVDLIEIDAA-------------S-RTKVEDTRDLLDN----V-QYAPARGRFKVYLIDEV 135 (250)
T ss_dssp SCSSCCSCSHHHHHHHTTCCSSEEEEETT-------------C-GGGHHHHHHHHHS----C-CCSCSSSSSEEEEEETG
T ss_pred CCCCCCcccHHHHHHhccCCcceEEecCc-------------c-cccHHHHHHHHHH----h-hhchhcCCceEEEEECc
Confidence 222333433322211110 011111110 0 0001334333221 1 11111113689999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|.++.+.++.|++.+++++.. .+|++|+. +..+++++++||..+.+.|++.+|+.+++..++
T Consensus 136 ~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~------------~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~ 203 (250)
T 1njg_A 136 HMLSRHSFNALLKTLEEPPEHVKFLLATTD------------PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 203 (250)
T ss_dssp GGSCHHHHHHHHHHHHSCCTTEEEEEEESC------------GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHHhcCCCceEEEEEeCC------------hHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999987654 55555554 446789999999999999999999999998654
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+++++++.|++.+ +|++|++.++++.+...+ ...||.++|+++++
T Consensus 204 ~~~~~~~~~l~~~~-~G~~~~~~~~~~~~~~~~----~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 204 AHEPRALQLLARAA-EGSLRDALSLTDQAIASG----DGQVSTQAVSAMLG 249 (250)
T ss_dssp CBCHHHHHHHHHHH-TTCHHHHHHHHHHHHTTT----TSSBCHHHHHHHSC
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcc----CceecHHHHHHHhC
Confidence 8999999999999 999999999999885432 34799999998753
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.72 E-value=1.1e-16 Score=145.03 Aligned_cols=208 Identities=18% Similarity=0.221 Sum_probs=145.5
Q ss_pred CCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hh-hhhhccCccccccCCCccCCCCcc
Q psy1686 31 DDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDGWLADVTKDL 108 (448)
Q Consensus 31 ~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~~~~~~~~fv 108 (448)
.+..+|.. +++++|++..... +.+.+++++..+ +.++||+..|||+ ++ +..... ...+ ...|+
T Consensus 8 ~~~~~p~~-~~~~~g~~~~~~~---l~~~l~~~~~~~--~ll~G~~G~GKT~l~~~l~~~~~---~~~~------~~~~~ 72 (226)
T 2chg_A 8 VEKYRPRT-LDEVVGQDEVIQR---LKGYVERKNIPH--LLFSGPPGTGKTATAIALARDLF---GENW------RDNFI 72 (226)
T ss_dssp HHHTSCSS-GGGCCSCHHHHHH---HHHHHHTTCCCC--EEEECSTTSSHHHHHHHHHHHHH---GGGG------GGGEE
T ss_pred HHhcCCCC-HHHHcCcHHHHHH---HHHHHhCCCCCe--EEEECCCCCCHHHHHHHHHHHHh---cccc------ccceE
Confidence 45578887 7999999988754 788888876655 8899998558875 33 221111 0000 01222
Q ss_pred ccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCC
Q psy1686 109 RCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLD 188 (448)
Q Consensus 109 ~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~ 188 (448)
.+ +..+.. + .+.+++.+....... ....-.+.|+||||+|.++
T Consensus 73 ~~--------------------~~~~~~---------~-----~~~~~~~~~~~~~~~---~~~~~~~~vliiDe~~~l~ 115 (226)
T 2chg_A 73 EM--------------------NASDER---------G-----IDVVRHKIKEFARTA---PIGGAPFKIIFLDEADALT 115 (226)
T ss_dssp EE--------------------ETTCTT---------C-----HHHHHHHHHHHHTSC---CSTTCSCEEEEEETGGGSC
T ss_pred Ee--------------------cccccc---------C-----hHHHHHHHHHHhccc---CCCccCceEEEEeChhhcC
Confidence 21 111100 1 134444443321110 0001136899999999999
Q ss_pred HHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------CCH
Q psy1686 189 IECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQT 261 (448)
Q Consensus 189 ~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i~d 261 (448)
.+.++.|++.++++... .+|++|+. +..+.+++++||..+.|.|++.+++.+++..++ +++
T Consensus 116 ~~~~~~l~~~l~~~~~~~~~i~~~~~------------~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 183 (226)
T 2chg_A 116 ADAQAALRRTMEMYSKSCRFILSCNY------------VSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITE 183 (226)
T ss_dssp HHHHHHHHHHHHHTTTTEEEEEEESC------------GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCH
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCC------------hhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999987655 45555554 456789999999999999999999999998655 899
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 262 DGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 262 eal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++.|++.+ +|++|.++++|+.+...+ ..|+.++|+++++
T Consensus 184 ~~~~~l~~~~-~g~~r~l~~~l~~~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 184 DGLEALIYIS-GGDFRKAINALQGAAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHTC-----SCBCHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHhcC-----ceecHHHHHHHhc
Confidence 9999999999 999999999999886543 5799999999875
No 15
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.72 E-value=1.7e-16 Score=158.63 Aligned_cols=215 Identities=18% Similarity=0.189 Sum_probs=148.4
Q ss_pred CCCCCCccccccccccchhhhhhhHHHHHHHhcC----CCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCC
Q psy1686 30 LDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEE----VVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADV 104 (448)
Q Consensus 30 L~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~----ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~ 104 (448)
+.+.++|++ ++.++||+++.+. +...|+.+ +.. +.+.++||+..|||| +++..+. .++
T Consensus 15 ~~~~lr~~~-l~~~~g~~~~~~~---l~~~i~~~~~~~~~~-~~~ll~Gp~G~GKTTLa~~ia~~-------l~~----- 77 (334)
T 1in4_A 15 GVQFLRPKS-LDEFIGQENVKKK---LSLALEAAKMRGEVL-DHVLLAGPPGLGKTTLAHIIASE-------LQT----- 77 (334)
T ss_dssp --CTTSCSS-GGGCCSCHHHHHH---HHHHHHHHHHHTCCC-CCEEEESSTTSSHHHHHHHHHHH-------HTC-----
T ss_pred HHHHcCCcc-HHHccCcHHHHHH---HHHHHHHHHhcCCCC-CeEEEECCCCCcHHHHHHHHHHH-------hCC-----
Confidence 457799998 7999999998776 44444443 221 348899999559987 6655221 111
Q ss_pred CCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 105 TKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 105 ~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
++.+. .|++. +-..+++.... . .. .++|+||||+
T Consensus 78 -~~~~~-sg~~~---------------------------------~~~~~l~~~~~----~---~~----~~~v~~iDE~ 111 (334)
T 1in4_A 78 -NIHVT-SGPVL---------------------------------VKQGDMAAILT----S---LE----RGDVLFIDEI 111 (334)
T ss_dssp -CEEEE-ETTTC---------------------------------CSHHHHHHHHH----H---CC----TTCEEEEETG
T ss_pred -CEEEE-echHh---------------------------------cCHHHHHHHHH----H---cc----CCCEEEEcch
Confidence 12110 11110 00123332211 1 11 2479999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCCeEEEEe---------cCceeEeeccccCCCCCCChhhhhhcc-cccCCCCCHHHHHHHH
Q psy1686 185 HMLDIECFSFLNRALESEMSPVVITAT---------NRGVTKIRGTAYSSPHGIPIDLLDRMV-IIPTQPYQDEEIQAIL 254 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~pi~IlaT---------~~~i~lI~~Ttenp~~~Ip~~lLSR~~-ii~~~pys~~eI~~IL 254 (448)
|+|....++.|+.++|+....+++... -..+.++++|+. ++.++.+++|||. .+.|.||+.+++.++|
T Consensus 112 ~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~--~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL 189 (334)
T 1in4_A 112 HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTR--SGLLSSPLRSRFGIILELDFYTVKELKEII 189 (334)
T ss_dssp GGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESC--GGGSCHHHHTTCSEEEECCCCCHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCC--cccCCHHHHHhcCceeeCCCCCHHHHHHHH
Confidence 999999999999998876433222110 012456665543 4679999999996 7899999999999999
Q ss_pred HHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 255 KIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 255 ~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
+.++ ++++++.+|++.+ +||+|.|+++|+++..+|...+...||.+++++++...
T Consensus 190 ~~~~~~~~~~~~~~~~~~ia~~~-~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 190 KRAASLMDVEIEDAAAEMIAKRS-RGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp HHHHHHTTCCBCHHHHHHHHHTS-TTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHcCCCcCHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 8655 8999999999999 99999999999999888866667789999999999864
No 16
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.72 E-value=6.4e-18 Score=168.31 Aligned_cols=171 Identities=13% Similarity=0.123 Sum_probs=123.4
Q ss_pred cchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhh-ccCccccccCCCccCCCCccccCCCcccceeeee
Q psy1686 45 GQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTA-TGREEEPDYDGWLADVTKDLRCPDGELQKRKTVV 122 (448)
Q Consensus 45 GQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~-~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~ 122 (448)
||+++. ..|.++|++|+ +|...++|||..|||+ +++.+. +|. |+.
T Consensus 1 g~~~~~---~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~------------------~~~---------- 47 (305)
T 2gno_A 1 GAKDQL---ETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEK------------------FPP---------- 47 (305)
T ss_dssp ---CHH---HHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHT------------------SCC----------
T ss_pred ChHHHH---HHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCch------------------hhc----------
Confidence 788886 45999999999 4558899999558865 543322 221 110
Q ss_pred eccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhc
Q psy1686 123 HTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESE 202 (448)
Q Consensus 123 ~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~ 202 (448)
.+.+++++|... ...|+ +++|+.++.+. .....| .++|+||||+|+|+.+++|+|+|++|+|
T Consensus 48 ~~~d~~~l~~~~-~~~~i------------d~ir~li~~~~-~~p~~~----~~kvviIdead~lt~~a~naLLk~LEep 109 (305)
T 2gno_A 48 KASDVLEIDPEG-ENIGI------------DDIRTIKDFLN-YSPELY----TRKYVIVHDCERMTQQAANAFLKALEEP 109 (305)
T ss_dssp CTTTEEEECCSS-SCBCH------------HHHHHHHHHHT-SCCSSS----SSEEEEETTGGGBCHHHHHHTHHHHHSC
T ss_pred cCCCEEEEcCCc-CCCCH------------HHHHHHHHHHh-hccccC----CceEEEeccHHHhCHHHHHHHHHHHhCC
Confidence 223344444321 01112 78998776542 222223 3599999999999999999999999998
Q ss_pred CCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-CCHHHHHHHHHHcCCCCHHHHH
Q psy1686 203 MSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-MQTDGLRVLTKIALDTSLRYAI 280 (448)
Q Consensus 203 ~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra-i~deal~~La~~a~~Gd~R~AL 280 (448)
+.. +||++|+. +.+++++++|| +|+|+|++.+++.+.|+.++ ++++++ +.+ .||+|.|+
T Consensus 110 ~~~t~fIl~t~~------------~~kl~~tI~SR--~~~f~~l~~~~i~~~L~~~~~i~~~~~----~~~-~g~~~~al 170 (305)
T 2gno_A 110 PEYAVIVLNTRR------------WHYLLPTIKSR--VFRVVVNVPKEFRDLVKEKIGDLWEEL----PLL-ERDFKTAL 170 (305)
T ss_dssp CTTEEEEEEESC------------GGGSCHHHHTT--SEEEECCCCHHHHHHHHHHHTTHHHHC----GGG-GTCHHHHH
T ss_pred CCCeEEEEEECC------------hHhChHHHHce--eEeCCCCCHHHHHHHHHHHhCCCHHHH----HHH-CCCHHHHH
Confidence 876 88888876 67899999999 99999999999999999776 888887 345 89999999
Q ss_pred HHHHH
Q psy1686 281 QLITT 285 (448)
Q Consensus 281 ~lLe~ 285 (448)
++|..
T Consensus 171 ~~l~~ 175 (305)
T 2gno_A 171 EAYKL 175 (305)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99863
No 17
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.72 E-value=1.4e-16 Score=157.31 Aligned_cols=219 Identities=17% Similarity=0.190 Sum_probs=144.7
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCc
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKD 107 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~f 107 (448)
.+.+.++|.+ ++++|||+++.++..-.....+...-..+.+.++||+..|||+ ++... +..+ ..|
T Consensus 18 ~~~~~~~p~~-~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia-------~~~~------~~~ 83 (338)
T 3pfi_A 18 TYETSLRPSN-FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIIS-------YEMS------ANI 83 (338)
T ss_dssp -----CCCCS-GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHH-------HHTT------CCE
T ss_pred hhhhccCCCC-HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHH-------HHhC------CCe
Confidence 4678899998 8999999999887544444443222222348899998558875 54221 1111 133
Q ss_pred cccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCC
Q psy1686 108 LRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHML 187 (448)
Q Consensus 108 v~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L 187 (448)
+.+.+.. ..+ ..+++..+.. .+ .+++|||||||.+
T Consensus 84 ~~~~~~~-----------------------------~~~-----~~~~~~~~~~-------~~----~~~vl~lDEi~~l 118 (338)
T 3pfi_A 84 KTTAAPM-----------------------------IEK-----SGDLAAILTN-------LS----EGDILFIDEIHRL 118 (338)
T ss_dssp EEEEGGG-----------------------------CCS-----HHHHHHHHHT-------CC----TTCEEEEETGGGC
T ss_pred EEecchh-----------------------------ccc-----hhHHHHHHHh-------cc----CCCEEEEechhhc
Confidence 3310000 000 0233322211 11 3589999999999
Q ss_pred CHHHHHHHHHhhhhcCCCeEEEE---------ecCceeEeeccccCCCCCCChhhhhhc-ccccCCCCCHHHHHHHHHHh
Q psy1686 188 DIECFSFLNRALESEMSPVVITA---------TNRGVTKIRGTAYSSPHGIPIDLLDRM-VIIPTQPYQDEEIQAILKIR 257 (448)
Q Consensus 188 ~~~~f~~Llk~lEe~~~pi~Ila---------T~~~i~lI~~Ttenp~~~Ip~~lLSR~-~ii~~~pys~~eI~~IL~~R 257 (448)
..+.++.|++.+|+.....+... ....+.+|++|+.. ..++++|++|| .++.|.+++.+++..+++..
T Consensus 119 ~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~--~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~ 196 (338)
T 3pfi_A 119 SPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRA--GMLSNPLRDRFGMQFRLEFYKDSELALILQKA 196 (338)
T ss_dssp CHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCG--GGSCHHHHTTCSEEEECCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCc--cccCHHHHhhcCEEeeCCCcCHHHHHHHHHHH
Confidence 99999999999998643221100 00023455555433 34789999999 79999999999999999865
Q ss_pred c------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 258 L------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 258 a------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
+ +++++++.|++.+ .|++|.+.++++.+...+...+...|+.+++..++..
T Consensus 197 ~~~~~~~~~~~~~~~l~~~~-~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 197 ALKLNKTCEEKAALEIAKRS-RSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNS 253 (338)
T ss_dssp HHHTTCEECHHHHHHHHHTT-TTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHH-CcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 5 8999999999977 9999999999999987775556678999999988764
No 18
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.66 E-value=2.9e-15 Score=146.39 Aligned_cols=215 Identities=19% Similarity=0.183 Sum_probs=141.2
Q ss_pred CCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hh-hhhhccCccccccCCCccCCCCcc
Q psy1686 31 DDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDGWLADVTKDL 108 (448)
Q Consensus 31 ~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~~~~~~~~fv 108 (448)
+++++|.+ ++++|||+++.+...-.........-..+.+.++||+..|||+ ++ |....| .+|+
T Consensus 3 ~~~~~p~~-~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~--------------~~~~ 67 (324)
T 1hqc_A 3 DLALRPKT-LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG--------------VNLR 67 (324)
T ss_dssp --CCCCCS-TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT--------------CCEE
T ss_pred ccccCccc-HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC--------------CCEE
Confidence 35789998 7999999998776433333333211122347899998558875 44 322222 1222
Q ss_pred --ccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 109 --RCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 109 --~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
.|+.-. . ..++...+.. . .+ .++++||||||.
T Consensus 68 ~~~~~~~~-------------------------------~-----~~~l~~~l~~----~--~~----~~~~l~lDEi~~ 101 (324)
T 1hqc_A 68 VTSGPAIE-------------------------------K-----PGDLAAILAN----S--LE----EGDILFIDEIHR 101 (324)
T ss_dssp EECTTTCC-------------------------------S-----HHHHHHHHTT----T--CC----TTCEEEETTTTS
T ss_pred EEeccccC-------------------------------C-----hHHHHHHHHH----h--cc----CCCEEEEECCcc
Confidence 221110 0 0233222211 0 11 358999999999
Q ss_pred CCHHHHHHHHHhhhhcCCCe---------EEEEecCceeEeeccccCCCCCCChhhhhhc-ccccCCCCCHHHHHHHHHH
Q psy1686 187 LDIECFSFLNRALESEMSPV---------VITATNRGVTKIRGTAYSSPHGIPIDLLDRM-VIIPTQPYQDEEIQAILKI 256 (448)
Q Consensus 187 L~~~~f~~Llk~lEe~~~pi---------~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~-~ii~~~pys~~eI~~IL~~ 256 (448)
++...++.|++.+++..... .+-.....+.+|++|+. +..+.++|++|| .++.+.+++.+|+..+++.
T Consensus 102 l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~--~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~ 179 (324)
T 1hqc_A 102 LSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTR--PGLITAPLLSRFGIVEHLEYYTPEELAQGVMR 179 (324)
T ss_dssp CCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESC--CSSCSCSTTTTCSCEEECCCCCHHHHHHHHHH
T ss_pred cccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCC--cccCCHHHHhcccEEEecCCCCHHHHHHHHHH
Confidence 99999999999999853100 00001112334444433 345788999999 6999999999999999986
Q ss_pred hc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 257 RL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 257 Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
.+ +++++++.|++.+ .|++|.+.++++.+...+...+...|+.+++..+...
T Consensus 180 ~~~~~~~~~~~~~~~~l~~~~-~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 237 (324)
T 1hqc_A 180 DARLLGVRITEEAALEIGRRS-RGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAA 237 (324)
T ss_dssp HHHTTTCCCCHHHHHHHHHHS-CSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 54 8999999999998 9999999999999876664445667999999887654
No 19
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.63 E-value=2.7e-16 Score=157.97 Aligned_cols=127 Identities=13% Similarity=0.104 Sum_probs=98.0
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhc---CCCeEEEEecCceeEeeccccCCCCCCChhhhhhc--ccccCCCCCHHH
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESE---MSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM--VIIPTQPYQDEE 249 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~---~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~--~ii~~~pys~~e 249 (448)
.+.|+||||+|+|. .+++|+..++-+ .+.++ ++.|+.|+++|.+.+++.++||| .+|.|+||+.+|
T Consensus 132 ~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~-------vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~e 202 (318)
T 3te6_A 132 RKTLILIQNPENLL--SEKILQYFEKWISSKNSKLS-------IICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNE 202 (318)
T ss_dssp CEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEE-------EEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHH
T ss_pred CceEEEEecHHHhh--cchHHHHHHhcccccCCcEE-------EEEEecCcccchhhcchhhhccCCceEEEeCCCCHHH
Confidence 35899999999998 677777776522 12221 12334456788777888999998 579999999999
Q ss_pred HHHHHHHhc-------C----------------------------------CHHHHHHHHHH--cCCCCHHHHHHHHHHH
Q psy1686 250 IQAILKIRL-------M----------------------------------QTDGLRVLTKI--ALDTSLRYAIQLITTA 286 (448)
Q Consensus 250 I~~IL~~Ra-------i----------------------------------~deal~~La~~--a~~Gd~R~AL~lLe~a 286 (448)
+.+||+.|. + +++|++++|+. +.+||+|.||++|++|
T Consensus 203 l~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A 282 (318)
T 3te6_A 203 LQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAA 282 (318)
T ss_dssp HHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHH
Confidence 999999876 1 78999999995 2389999999999999
Q ss_pred HHHhhhh---------CCCcccHHHHHHHHHHh
Q psy1686 287 SVVCRRR---------KATEICMEDIRKVYALF 310 (448)
Q Consensus 287 ~~~a~~~---------~~~~It~e~V~~~~~lf 310 (448)
...|+.+ +...||.+.++++++-+
T Consensus 283 ~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~~~ 315 (318)
T 3te6_A 283 VEISKKDFVRKGGLQKGKLVVSQEMVPRYFSEA 315 (318)
T ss_dssp HHHHHHHHHHHTTEETTEECCSEECCTHHHHHH
T ss_pred HHHHHHHHHhccCCCCCcEEeeHHHHHHHHHHH
Confidence 9988642 23468888888887654
No 20
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.60 E-value=3.5e-15 Score=147.68 Aligned_cols=150 Identities=17% Similarity=0.203 Sum_probs=108.6
Q ss_pred CeEEEEeccCCCCHH--HHHHHHHhhhhcCCCeEEEEecCceeEeeccccCC-CCCCChhhhhhc--ccccCCCCCHHHH
Q psy1686 176 PGVLFIDEVHMLDIE--CFSFLNRALESEMSPVVITATNRGVTKIRGTAYSS-PHGIPIDLLDRM--VIIPTQPYQDEEI 250 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~--~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp-~~~Ip~~lLSR~--~ii~~~pys~~eI 250 (448)
+.|+||||+|++... .++.|+..++....... +..+.+|++|+..| ...+.+.+++|| ..+.|.||+.+++
T Consensus 131 ~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~----~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~ 206 (387)
T 2v1u_A 131 IYIIVLDEIDFLPKRPGGQDLLYRITRINQELGD----RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQL 206 (387)
T ss_dssp EEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC---------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHH
T ss_pred eEEEEEccHhhhcccCCCChHHHhHhhchhhcCC----CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHH
Confidence 579999999999776 67777766653311000 11223333333332 256889999999 6899999999999
Q ss_pred HHHHHHhc--------CCHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhc-c-hhHHH
Q psy1686 251 QAILKIRL--------MQTDGLRVLTKIALD---TSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFL-D-EGRST 317 (448)
Q Consensus 251 ~~IL~~Ra--------i~deal~~La~~a~~---Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~-D-~~~s~ 317 (448)
.++++.++ +++++++++++.+ . |++|+|+++++.|...|...+...|+.+++++++.... + ...++
T Consensus 207 ~~il~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~ 285 (387)
T 2v1u_A 207 RDILETRAEEAFNPGVLDPDVVPLCAALA-AREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIERDRVSEVV 285 (387)
T ss_dssp HHHHHHHHHHHBCTTTBCSSHHHHHHHHH-HSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHH-HHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhchHHHHH
Confidence 99998653 8899999999998 6 99999999999998887655667899999999987432 2 23445
Q ss_pred HHHHHHHhhhhhh
Q psy1686 318 QYLREHQNEYMFD 330 (448)
Q Consensus 318 ~~L~~~~~~~l~~ 330 (448)
+.+..++..++..
T Consensus 286 ~~l~~~~~~~l~a 298 (387)
T 2v1u_A 286 RTLPLHAKLVLLS 298 (387)
T ss_dssp HSSCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 5566666666553
No 21
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.57 E-value=2.4e-14 Score=141.05 Aligned_cols=132 Identities=17% Similarity=0.217 Sum_probs=96.7
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCC---C--eEEEEecCceeEeeccccCCCCCCChhhhhhccc-ccCCCCCHH-
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMS---P--VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVI-IPTQPYQDE- 248 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~---p--i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~i-i~~~pys~~- 248 (448)
++||||||+|+++.+.++.|++++|+... . .. ..-...+.+|++|+. ....++++|+|||.+ +.+.+++..
T Consensus 145 ~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~-~~~~~~~~li~~~n~-~~~~l~~~L~~R~~~~~~l~~~~~~~ 222 (350)
T 1g8p_A 145 RGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLS-IRHPARFVLVGSGNP-EEGDLRPQLLDRFGLSVEVLSPRDVE 222 (350)
T ss_dssp TEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCC-EEEECCEEEEEEECS-CSCCCCHHHHTTCSEEEECCCCCSHH
T ss_pred CCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceE-EeeCCceEEEEEeCC-CCCCCCHHHHhhcceEEEcCCCCcHH
Confidence 58999999999999999999999997310 0 00 000112334444432 134689999999975 999999544
Q ss_pred HHHHHHHH-----------------------------hc------CCHHHHHHHHHHcCCC----CHHHHHHHHHHHHHH
Q psy1686 249 EIQAILKI-----------------------------RL------MQTDGLRVLTKIALDT----SLRYAIQLITTASVV 289 (448)
Q Consensus 249 eI~~IL~~-----------------------------Ra------i~deal~~La~~a~~G----d~R~AL~lLe~a~~~ 289 (448)
+-.+|++. ++ ++++++++|++++ .+ ++|.++++++.|...
T Consensus 223 ~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~-~~~~~~~~R~~~~ll~~a~~~ 301 (350)
T 1g8p_A 223 TRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALC-IALGSDGLRGELTLLRSARAL 301 (350)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHH-HHSSSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-HHhCCCCccHHHHHHHHHHHH
Confidence 33366543 11 9999999999997 44 899999999999888
Q ss_pred hhhhCCCcccHHHHHHHHHHh
Q psy1686 290 CRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 290 a~~~~~~~It~e~V~~~~~lf 310 (448)
|..++...|+.++|++++...
T Consensus 302 A~~~~~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 302 AALEGATAVGRDHLKRVATMA 322 (350)
T ss_dssp HHHTTCSBCCHHHHHHHHHHH
T ss_pred HHHcCCCcCCHHHHHHHHHHH
Confidence 765677789999999998754
No 22
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.55 E-value=2e-13 Score=135.72 Aligned_cols=145 Identities=19% Similarity=0.207 Sum_probs=113.5
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCC----C-eEEEEecCceeEeeccccCCCCCCChhhhhhcc--cccCCCCCHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMS----P-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV--IIPTQPYQDE 248 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~----p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~--ii~~~pys~~ 248 (448)
+.|+||||+|.++.+.++.|.+.+++... + .+|++++.. .....+.+.+++||. .+.|.||+.+
T Consensus 126 ~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~---------~~~~~l~~~~~~r~~~~~i~~~pl~~~ 196 (389)
T 1fnn_A 126 YMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND---------AVLNNLDPSTRGIMGKYVIRFSPYTKD 196 (389)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST---------HHHHTSCHHHHHHHTTCEEECCCCBHH
T ss_pred eEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc---------hHHHHhCHHhhhcCCCceEEeCCCCHH
Confidence 57999999999999999999999987542 3 444555541 001236788999997 6999999999
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhc-
Q psy1686 249 EIQAILKIRL--------MQTDGLRVLTKIAL--------DTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFL- 311 (448)
Q Consensus 249 eI~~IL~~Ra--------i~deal~~La~~a~--------~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~- 311 (448)
++.+++..++ +++++++.|++.+. .|++|+++++++.|...|..++...|+.++|.++.....
T Consensus 197 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~ 276 (389)
T 1fnn_A 197 QIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLF 276 (389)
T ss_dssp HHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhh
Confidence 9999998654 89999999999974 699999999999998887666677899999999887543
Q ss_pred -chhHHHHHHHHHHhhhhh
Q psy1686 312 -DEGRSTQYLREHQNEYMF 329 (448)
Q Consensus 312 -D~~~s~~~L~~~~~~~l~ 329 (448)
.....++.|..++..+|.
T Consensus 277 ~~~~~~l~~l~~~~~~~L~ 295 (389)
T 1fnn_A 277 GISEEVLIGLPLHEKLFLL 295 (389)
T ss_dssp CCCHHHHHHSCHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHH
Confidence 235556666666666654
No 23
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.53 E-value=5.3e-14 Score=130.05 Aligned_cols=213 Identities=14% Similarity=0.073 Sum_probs=138.9
Q ss_pred cCCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hh-hhhhccCccccccCCCccC
Q psy1686 26 RGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDGWLAD 103 (448)
Q Consensus 26 ~glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~~~~~ 103 (448)
+.++++..++|...+++++|......+...+.+++..++ ++.+.++||+..|||+ ++ +....+ ...+
T Consensus 13 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~ll~G~~G~GKT~la~~l~~~~~---~~~~------ 81 (242)
T 3bos_A 13 LQLSLPVHLPDDETFTSYYPAAGNDELIGALKSAASGDG--VQAIYLWGPVKSGRTHLIHAACARAN---ELER------ 81 (242)
T ss_dssp CCCEEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCS--CSEEEEECSTTSSHHHHHHHHHHHHH---HTTC------
T ss_pred hhcCCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHH---HcCC------
Confidence 457888999996679999983322334456777777653 3458899998558876 33 221111 0000
Q ss_pred CCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEec
Q psy1686 104 VTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDE 183 (448)
Q Consensus 104 ~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDE 183 (448)
...|+.| .++. + . + ..- +. .+ + .++++||||
T Consensus 82 ~~~~~~~-----------------~~~~--~-~---~-----------~~~----~~----~~---~----~~~vliiDe 112 (242)
T 3bos_A 82 RSFYIPL-----------------GIHA--S-I---S-----------TAL----LE----GL---E----QFDLICIDD 112 (242)
T ss_dssp CEEEEEG-----------------GGGG--G-S---C-----------GGG----GT----TG---G----GSSEEEEET
T ss_pred eEEEEEH-----------------HHHH--H-H---H-----------HHH----HH----hc---c----CCCEEEEec
Confidence 0112221 1100 0 0 0 000 00 00 1 258999999
Q ss_pred cCCCCHHH--HHHHHHhhhhcCC---CeEEEEecCceeEeeccccCCCCCCChhhhhhc---ccccCCCCCHHHHHHHHH
Q psy1686 184 VHMLDIEC--FSFLNRALESEMS---PVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM---VIIPTQPYQDEEIQAILK 255 (448)
Q Consensus 184 VH~L~~~~--f~~Llk~lEe~~~---pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~---~ii~~~pys~~eI~~IL~ 255 (448)
+|.+.... ++.|+..++.... +.+|++++.. ......+.+++.+|| .++.|.|++.+++.+++.
T Consensus 113 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~--------~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~ 184 (242)
T 3bos_A 113 VDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS--------PMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQ 184 (242)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC--------TTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC--------HHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHH
Confidence 99997766 7778887765431 2355555531 000113458999999 899999999999999998
Q ss_pred Hhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 256 IRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 256 ~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
.++ ++++++++|++.+ .||+|.+.++|+.+..+|...+ ..||.++|+++++
T Consensus 185 ~~~~~~~~~~~~~~~~~l~~~~-~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 185 RRAAMRGLQLPEDVGRFLLNRM-ARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 654 8999999999998 9999999999999988774333 5699999998764
No 24
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.52 E-value=5.4e-14 Score=140.02 Aligned_cols=140 Identities=19% Similarity=0.219 Sum_probs=102.8
Q ss_pred eEEEEeccCCCCHHH-HHH-HHHhhhhcCCC-eEEEEecCceeEeeccccCC-CCCCChhhhhhc-ccccCCCCCHHHHH
Q psy1686 177 GVLFIDEVHMLDIEC-FSF-LNRALESEMSP-VVITATNRGVTKIRGTAYSS-PHGIPIDLLDRM-VIIPTQPYQDEEIQ 251 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~-f~~-Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp-~~~Ip~~lLSR~-~ii~~~pys~~eI~ 251 (448)
.|+||||+|.+.... ++. |....+.. .+ .+|++|+. .| ...+.+++++|+ ..+.|.||+.+++.
T Consensus 135 ~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~----------~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~ 203 (384)
T 2qby_B 135 AIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISND----------INVRDYMEPRVLSSLGPSVIFKPYDAEQLK 203 (384)
T ss_dssp EEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSS----------TTTTTTSCHHHHHTCCCEEEECCCCHHHHH
T ss_pred CEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECC----------CchHhhhCHHHHhcCCCeEEECCCCHHHHH
Confidence 499999999997653 555 55555543 22 33333332 22 256889999994 79999999999999
Q ss_pred HHHHHhc--------CCHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhc-c-hhHHHH
Q psy1686 252 AILKIRL--------MQTDGLRVLTKIALD---TSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFL-D-EGRSTQ 318 (448)
Q Consensus 252 ~IL~~Ra--------i~deal~~La~~a~~---Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~-D-~~~s~~ 318 (448)
++++.++ +++++++.+++.+ . ||+|+|+++++.|...|. +...|+.++|++++.... + ...+++
T Consensus 204 ~il~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~~~~~~~~~~ 280 (384)
T 2qby_B 204 FILSKYAEYGLIKGTYDDEILSYIAAIS-AKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYEQERLIEAVK 280 (384)
T ss_dssp HHHHHHHHHTSCTTSCCSHHHHHHHHHH-HTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCcCHHHHHHHHHHH-HhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHhcchHHHHHH
Confidence 9998752 8899999999998 6 999999999999988874 556899999999987532 1 234445
Q ss_pred HHHHHHhhhhhh
Q psy1686 319 YLREHQNEYMFD 330 (448)
Q Consensus 319 ~L~~~~~~~l~~ 330 (448)
.|..++..++..
T Consensus 281 ~l~~~~~~~l~a 292 (384)
T 2qby_B 281 ALPFHYKLALRS 292 (384)
T ss_dssp SSCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 555556655553
No 25
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=2.8e-14 Score=150.84 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=91.9
Q ss_pred cCeEEEEeccCCCCHHH---HHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHH
Q psy1686 175 VPGVLFIDEVHMLDIEC---FSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQ 251 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~---f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~ 251 (448)
.+.||||||||.|.... ++.|++.+++...|+++++++ +.. ..+ +++.+||..+.|.+++.+++.
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~~~---------~~~--~~l-~~l~~r~~~i~f~~~~~~~~~ 215 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNE---------RNL--PKM-RPFDRVCLDIQFRRPDANSIK 215 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESC---------TTS--STT-GGGTTTSEEEECCCCCHHHHH
T ss_pred CCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEEcC---------CCC--ccc-hhhHhceEEEEeCCCCHHHHH
Confidence 36899999999997644 488999999876664443322 222 223 568999999999999999999
Q ss_pred HHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 252 AILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 252 ~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++|...+ +++++++.|++.+ +||+|.|+++|+.+.. +...|+.++++++..
T Consensus 216 ~~L~~i~~~~~~~i~~~~l~~la~~s-~GdiR~~i~~L~~~~~-----~~~~It~~~v~~~~~ 272 (516)
T 1sxj_A 216 SRLMTIAIREKFKLDPNVIDRLIQTT-RGDIRQVINLLSTIST-----TTKTINHENINEISK 272 (516)
T ss_dssp HHHHHHHHHHTCCCCTTHHHHHHHHT-TTCHHHHHHHHTHHHH-----HSSCCCTTHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHHHh-----cCCCCchHHHHHHHH
Confidence 9987654 9999999999999 9999999999987643 234699999988775
No 26
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.51 E-value=2.6e-13 Score=141.01 Aligned_cols=123 Identities=17% Similarity=0.238 Sum_probs=98.2
Q ss_pred CeEEEEeccCCCCH--HHHHHHHHhhhhcCC--CeEEEEecCceeEeeccccCCCCC---CChhhhhhc---ccccCCCC
Q psy1686 176 PGVLFIDEVHMLDI--ECFSFLNRALESEMS--PVVITATNRGVTKIRGTAYSSPHG---IPIDLLDRM---VIIPTQPY 245 (448)
Q Consensus 176 ~~VLfIDEVH~L~~--~~f~~Llk~lEe~~~--pi~IlaT~~~i~lI~~Ttenp~~~---Ip~~lLSR~---~ii~~~py 245 (448)
++||||||+|++.. ..++.|+.++++... ..+|++|+ +|++. +.++++||| .++.+.|+
T Consensus 195 ~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~-----------~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 195 VDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD-----------REPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp CSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEES-----------SCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEEC-----------CCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 58999999999975 677777777765332 23333333 33443 789999999 79999999
Q ss_pred CHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhc
Q psy1686 246 QDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFL 311 (448)
Q Consensus 246 s~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~ 311 (448)
+.++..+||+.++ ++++++++|++.+ .||+|.+.++|+.+..+|...+ ..||.+++++++....
T Consensus 264 ~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~-~gn~R~l~~~L~~~~~~a~~~~-~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 264 DEETRKSIARKMLEIEHGELPEEVLNFVAENV-DDNLRRLRGAIIKLLVYKETTG-KEVDLKEAILLLKDFI 333 (440)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHSS-SCCCHHHHHHHTSTTT
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHh
Confidence 9999999998665 8999999999999 9999999999999988775333 4799999999887543
No 27
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.50 E-value=1e-13 Score=137.89 Aligned_cols=139 Identities=12% Similarity=0.034 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC-CCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCC---CC
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM-LDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSS---PH 227 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~-L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp---~~ 227 (448)
.++|+.++.+ ......|. ++|++|||+|+ ++++.+++|++++|+|+.. +||++++. .++ .+
T Consensus 59 ~~~~~l~~~~-~~~plf~~----~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~---------~~~~~~~~ 124 (343)
T 1jr3_D 59 TDWNAIFSLC-QAMSLFAS----RQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNK---------LSKAQENA 124 (343)
T ss_dssp CCHHHHHHHH-HHHHHCCS----CEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESC---------CCTTTTTS
T ss_pred CCHHHHHHHh-cCcCCccC----CeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCC---------CChhhHhh
Confidence 4566655554 33334453 58999999999 9999999999999998876 55555543 222 57
Q ss_pred CCChhhhhhcccccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHH
Q psy1686 228 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICME 301 (448)
Q Consensus 228 ~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e 301 (448)
++++++.|||.++.|+|++.+++.+.|+.++ ++++++++|++.+ +||+|.|++.|+.+..++ +.+.||.+
T Consensus 125 k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~-~gdl~~~~~elekl~l~~---~~~~It~e 200 (343)
T 1jr3_D 125 AWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCY-EGNLLALAQALERLSLLW---PDGKLTLP 200 (343)
T ss_dssp HHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSS-TTCHHHHHHHHHHHHHHC---TTCEECHH
T ss_pred HHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-chHHHHHHHHHHHHHHhc---CCCCCCHH
Confidence 8999999999999999999999998887665 9999999999999 999999999999987764 23479999
Q ss_pred HHHHHHHH
Q psy1686 302 DIRKVYAL 309 (448)
Q Consensus 302 ~V~~~~~l 309 (448)
+|+++...
T Consensus 201 ~V~~~~~~ 208 (343)
T 1jr3_D 201 RVEQAVND 208 (343)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99998764
No 28
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.49 E-value=1.8e-13 Score=132.96 Aligned_cols=122 Identities=23% Similarity=0.220 Sum_probs=92.2
Q ss_pred CeEEEEeccCCC---------CHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhc-ccccCCC
Q psy1686 176 PGVLFIDEVHML---------DIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRM-VIIPTQP 244 (448)
Q Consensus 176 ~~VLfIDEVH~L---------~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~-~ii~~~p 244 (448)
++||||||+|+| +.+.++.|++.+++...+ .+|++|+.. ..++++.++++|+||| .++.|.+
T Consensus 131 ~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~-------~~~~~~~~~~~l~~R~~~~i~~~~ 203 (309)
T 3syl_A 131 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYAD-------RMENFFQSNPGFRSRIAHHIEFPD 203 (309)
T ss_dssp TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHH-------HHHHHHHHSTTHHHHEEEEEEECC
T ss_pred CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChH-------HHHHHHhhCHHHHHhCCeEEEcCC
Confidence 479999999988 889999999999997655 444444421 1123444678999999 8999999
Q ss_pred CCHHHHHHHHHHhc------CCHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHHhhhh----CCCcccHHHHH
Q psy1686 245 YQDEEIQAILKIRL------MQTDGLRVLTKI-------ALDTSLRYAIQLITTASVVCRRR----KATEICMEDIR 304 (448)
Q Consensus 245 ys~~eI~~IL~~Ra------i~deal~~La~~-------a~~Gd~R~AL~lLe~a~~~a~~~----~~~~It~e~V~ 304 (448)
|+.+++.+|++..+ ++++++++++++ ...|++|.+.++++.+...+..+ ....++.+++.
T Consensus 204 ~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 204 YSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHHC---CEEHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHh
Confidence 99999999998654 999999999998 33589999999999997643211 23456655554
No 29
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.49 E-value=2.4e-13 Score=134.03 Aligned_cols=123 Identities=16% Similarity=0.240 Sum_probs=89.5
Q ss_pred CeEEEEeccCCCCH--HHHHHHHHhhhhcC--CCeEEEEecCceeEeeccccCCCC---CCChhhhhhc---ccccCCCC
Q psy1686 176 PGVLFIDEVHMLDI--ECFSFLNRALESEM--SPVVITATNRGVTKIRGTAYSSPH---GIPIDLLDRM---VIIPTQPY 245 (448)
Q Consensus 176 ~~VLfIDEVH~L~~--~~f~~Llk~lEe~~--~pi~IlaT~~~i~lI~~Ttenp~~---~Ip~~lLSR~---~ii~~~py 245 (448)
++||||||+|++.. ..+..|...++... ...+|++++ +|+. .++++|+||| .++.++|
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~-----------~~~~~l~~l~~~L~sR~~~~~~i~l~~- 166 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD-----------RHPQKLDGVSDRLVSRFEGGILVEIEL- 166 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES-----------SCGGGCTTSCHHHHHHHHTSEEEECCC-
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec-----------CChHHHHHhhhHhhhcccCceEEEeCC-
Confidence 58999999999975 55555656554322 112333333 2333 5889999999 7899999
Q ss_pred CHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhh----hhCCCcc-cHHHHHHHHHHhcc
Q psy1686 246 QDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCR----RRKATEI-CMEDIRKVYALFLD 312 (448)
Q Consensus 246 s~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~----~~~~~~I-t~e~V~~~~~lf~D 312 (448)
+.++..+|++.++ ++++++++|++.+ ||+|.+.++|+.+..... ..+...| +.++|++++..+++
T Consensus 167 ~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~~~~ 242 (324)
T 1l8q_A 167 DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVANYYA 242 (324)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHHHHhC
Confidence 9999999998665 9999999999998 999999999998865510 0112357 77888777765444
No 30
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.49 E-value=1.4e-13 Score=132.97 Aligned_cols=133 Identities=15% Similarity=0.144 Sum_probs=95.6
Q ss_pred CeEEEEeccCCCCHHH------------HHHHHHhhhhcCC--CeEEEEecCceeEeeccc--cCCCCCCChhhhhhcc-
Q psy1686 176 PGVLFIDEVHMLDIEC------------FSFLNRALESEMS--PVVITATNRGVTKIRGTA--YSSPHGIPIDLLDRMV- 238 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~------------f~~Llk~lEe~~~--pi~IlaT~~~i~lI~~Tt--enp~~~Ip~~lLSR~~- 238 (448)
++|+||||+|.+..+. ++.|++.+|+... ..- ......+.+|.+++ .+.+..++++|+|||.
T Consensus 117 ~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~ 195 (310)
T 1ofh_A 117 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHG-MVKTDHILFIASGAFQVARPSDLIPELQGRLPI 195 (310)
T ss_dssp HCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTE-EEECTTCEEEEEECCSSSCGGGSCHHHHHTCCE
T ss_pred CCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccc-cccCCcEEEEEcCCcccCCcccCCHHHHhhCCc
Confidence 4899999999998765 8999999997420 000 00112333444331 2335678999999995
Q ss_pred cccCCCCCHHHHHHHHHH---------------hc----CCHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHh--
Q psy1686 239 IIPTQPYQDEEIQAILKI---------------RL----MQTDGLRVLTKIAL-------DTSLRYAIQLITTASVVC-- 290 (448)
Q Consensus 239 ii~~~pys~~eI~~IL~~---------------Ra----i~deal~~La~~a~-------~Gd~R~AL~lLe~a~~~a-- 290 (448)
++.|.||+.+++.+|++. .. ++++++++|++.+. .|++|.+.++++.+...+
T Consensus 196 ~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~ 275 (310)
T 1ofh_A 196 RVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISF 275 (310)
T ss_dssp EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHH
T ss_pred eEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhc
Confidence 699999999999999982 11 89999999999973 589999999999976321
Q ss_pred ---hhhCCC-cccHHHHHHHHHH
Q psy1686 291 ---RRRKAT-EICMEDIRKVYAL 309 (448)
Q Consensus 291 ---~~~~~~-~It~e~V~~~~~l 309 (448)
...+.. .|+.++|+++++.
T Consensus 276 ~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 276 SASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HGGGCTTCEEEECHHHHHHHTCS
T ss_pred CCccccCCEEEEeeHHHHHHHHh
Confidence 111222 4999999988753
No 31
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.42 E-value=1.7e-12 Score=124.96 Aligned_cols=124 Identities=26% Similarity=0.316 Sum_probs=93.4
Q ss_pred CeEEEEeccCCC-----------CHHHHHHHHHhhhhc---C--CCe-EEEEecCceeEeeccccCCCCCCChhhhh--h
Q psy1686 176 PGVLFIDEVHML-----------DIECFSFLNRALESE---M--SPV-VITATNRGVTKIRGTAYSSPHGIPIDLLD--R 236 (448)
Q Consensus 176 ~~VLfIDEVH~L-----------~~~~f~~Llk~lEe~---~--~pi-~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R 236 (448)
|.||||||+|.+ +.+.+..|+..++.. . .++ +|.+|| ++..+++++++ |
T Consensus 111 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn------------~~~~l~~~l~~~~R 178 (285)
T 3h4m_A 111 PSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATN------------RPDILDPAILRPGR 178 (285)
T ss_dssp SEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECS------------CGGGBCHHHHSTTS
T ss_pred CeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCC------------CchhcCHHHcCCCc
Confidence 689999999998 455666666666542 1 223 333333 36779999999 8
Q ss_pred cc-cccCCCCCHHHHHHHHHHhc----C-CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 237 MV-IIPTQPYQDEEIQAILKIRL----M-QTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 237 ~~-ii~~~pys~~eI~~IL~~Ra----i-~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
+. ++.+.+++.++..+|++.++ + ++..++.|+..+.+.+.|..-+++..|...|..++...|+.+++++++..+
T Consensus 179 f~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 179 FDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp EEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 84 89999999999999998655 3 233478888888344899999999999888776677789999999998754
Q ss_pred c
Q psy1686 311 L 311 (448)
Q Consensus 311 ~ 311 (448)
.
T Consensus 259 ~ 259 (285)
T 3h4m_A 259 M 259 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 32
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.42 E-value=1e-12 Score=129.63 Aligned_cols=125 Identities=20% Similarity=0.216 Sum_probs=97.7
Q ss_pred CeEEEEeccCCCC----HHHHHHHHHhhhhc-CCC-eEEEEecCceeEeeccccCCCCCCChhhhhhc--ccccCCCCCH
Q psy1686 176 PGVLFIDEVHMLD----IECFSFLNRALESE-MSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRM--VIIPTQPYQD 247 (448)
Q Consensus 176 ~~VLfIDEVH~L~----~~~f~~Llk~lEe~-~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~--~ii~~~pys~ 247 (448)
+.|+||||+|.+. .+.++.|.+.+++. ..+ .+|++|+. ......+.+.+++|| ..+.|.||+.
T Consensus 129 ~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~---------~~~~~~~~~~~~~r~~~~~i~l~~l~~ 199 (386)
T 2qby_A 129 QVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND---------VKFVDLLDPRVKSSLSEEEIIFPPYNA 199 (386)
T ss_dssp CEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC---------GGGGGGCTTHHHHTTTTEEEEECCCCH
T ss_pred eEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC---------CChHhhhCHHHhccCCCeeEEeCCCCH
Confidence 6899999999995 56777788877652 222 44444443 111134678899999 6899999999
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 248 EEIQAILKIRL--------MQTDGLRVLTKIALD---TSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 248 ~eI~~IL~~Ra--------i~deal~~La~~a~~---Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
+++.+++..++ +++++++++++.+ . |++|.++++++.+...|..++...|+.+++++++...
T Consensus 200 ~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 200 EELEDILTKRAQMAFKPGVLPDNVIKLCAALA-AREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp HHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCCCHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 99999998643 8999999999998 6 9999999999999888765566789999999988743
No 33
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.41 E-value=8.7e-12 Score=126.63 Aligned_cols=214 Identities=20% Similarity=0.208 Sum_probs=132.7
Q ss_pred CCCCCCccccccccccchhhhhhhHHHHHHHhc----CC------CCCCCcccccCCCCCcch-hhhhhhccCccccccC
Q psy1686 30 LDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKE----EV------VMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYD 98 (448)
Q Consensus 30 L~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~----~k------i~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d 98 (448)
+-+..+|.. ++++|||+++++. |.+++.. .. -....+.++||+..|||+ ++... +..+
T Consensus 105 ~~~~~~~~~-~~~iiG~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia-------~~~~ 173 (389)
T 3vfd_A 105 IVDNGTAVK-FDDIAGQDLAKQA---LQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVA-------AESN 173 (389)
T ss_dssp TBCCSCCCC-GGGSCSCHHHHHH---HHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHH-------HHTT
T ss_pred hhccCCCCC-hHHhCCHHHHHHH---HHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHH-------Hhhc
Confidence 334455666 8999999999866 4444421 11 112347899998558875 55321 1111
Q ss_pred CCccCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeE
Q psy1686 99 GWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGV 178 (448)
Q Consensus 99 ~~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~V 178 (448)
..|+.+.+.++. ....++....++..+..+. .. .++|
T Consensus 174 ------~~~~~v~~~~l~----------------------------~~~~g~~~~~~~~~~~~a~-----~~----~~~i 210 (389)
T 3vfd_A 174 ------ATFFNISAASLT----------------------------SKYVGEGEKLVRALFAVAR-----EL----QPSI 210 (389)
T ss_dssp ------CEEEEECSCCC-----------------------------------CHHHHHHHHHHHH-----HS----SSEE
T ss_pred ------CcEEEeeHHHhh----------------------------ccccchHHHHHHHHHHHHH-----hc----CCeE
Confidence 244443222221 0111222234444443321 11 3589
Q ss_pred EEEeccCCC-----------CHHHHHHHHHhhhhcCC----C-eEEEEecCceeEeeccccCCCCCCChhhhhhcc-ccc
Q psy1686 179 LFIDEVHML-----------DIECFSFLNRALESEMS----P-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV-IIP 241 (448)
Q Consensus 179 LfIDEVH~L-----------~~~~f~~Llk~lEe~~~----p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~-ii~ 241 (448)
|||||||.| ....++.|++.++.... . +||.+||. +..+++++++||. ++.
T Consensus 211 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~------------~~~l~~~l~~R~~~~i~ 278 (389)
T 3vfd_A 211 IFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNR------------PQELDEAVLRRFIKRVY 278 (389)
T ss_dssp EEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESC------------GGGCCHHHHTTCCEEEE
T ss_pred EEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCC------------chhcCHHHHcCcceEEE
Confidence 999999988 45667788888875432 2 33334433 6779999999995 899
Q ss_pred CCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHH-HHHHHHHHHhhhh------------CCCcccHHH
Q psy1686 242 TQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAI-QLITTASVVCRRR------------KATEICMED 302 (448)
Q Consensus 242 ~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL-~lLe~a~~~a~~~------------~~~~It~e~ 302 (448)
+.+++.++..+|++..+ +++++++.|++.+ .|..+.++ +++..|...+..+ ....|+.+|
T Consensus 279 i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~-~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d 357 (389)
T 3vfd_A 279 VSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMT-DGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSD 357 (389)
T ss_dssp CCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHT-TTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHH
T ss_pred cCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHH
Confidence 99999999999998655 8999999999999 77666555 4555554444322 234699999
Q ss_pred HHHHHHHh
Q psy1686 303 IRKVYALF 310 (448)
Q Consensus 303 V~~~~~lf 310 (448)
+..++...
T Consensus 358 ~~~al~~~ 365 (389)
T 3vfd_A 358 FTESLKKI 365 (389)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHc
Confidence 99888753
No 34
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.39 E-value=1.6e-12 Score=128.18 Aligned_cols=129 Identities=19% Similarity=0.201 Sum_probs=99.0
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC-----------CCeEEEEecCceeEeeccccCCCCCCChhhhhhcc-cccCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM-----------SPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV-IIPTQ 243 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~-----------~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~-ii~~~ 243 (448)
.+|+||||+|+++...++.|+.++|+.. .+.++++|+... .....+.++++++|||. .+.+.
T Consensus 110 ~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~------~~~~~~~l~~~l~~Rf~~~i~i~ 183 (331)
T 2r44_A 110 SNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV------EQEGTYPLPEAQVDRFMMKIHLT 183 (331)
T ss_dssp SSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT------CCSCCCCCCHHHHTTSSEEEECC
T ss_pred ccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC------cccCcccCCHHHHhheeEEEEcC
Confidence 4799999999999999999999999752 222333332200 00112358999999998 49999
Q ss_pred CCCHHHHHHHHHHhc----------------------------CCHHHHHHHHHHcC----C---------------CCH
Q psy1686 244 PYQDEEIQAILKIRL----------------------------MQTDGLRVLTKIAL----D---------------TSL 276 (448)
Q Consensus 244 pys~~eI~~IL~~Ra----------------------------i~deal~~La~~a~----~---------------Gd~ 276 (448)
+++.++..+||+.++ +++++++++++++. . .++
T Consensus 184 ~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~ 263 (331)
T 2r44_A 184 YLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGAST 263 (331)
T ss_dssp CCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCH
T ss_pred CCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcCh
Confidence 999999999987531 68999999988641 1 279
Q ss_pred HHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 277 RYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 277 R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
|.+++++..|...|.-++...|+.+||++++...
T Consensus 264 R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 264 RAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDI 297 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 9999999999887766677789999999998754
No 35
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.37 E-value=1.4e-12 Score=131.47 Aligned_cols=132 Identities=18% Similarity=0.230 Sum_probs=91.8
Q ss_pred CeEEEEeccCCCCHH--------------HHHHHHHhhhhcC-------------CCeEEEEecCceeEeeccc------
Q psy1686 176 PGVLFIDEVHMLDIE--------------CFSFLNRALESEM-------------SPVVITATNRGVTKIRGTA------ 222 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~--------------~f~~Llk~lEe~~-------------~pi~IlaT~~~i~lI~~Tt------ 222 (448)
++|+||||+|.+... .++.|++.+|+.. ...++++|. ++.+|.+++
T Consensus 138 ~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~-n~~~I~~~~~~~l~~ 216 (376)
T 1um8_A 138 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTS-DILFICAGAFDGLAE 216 (376)
T ss_dssp TSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC---------------CEECT-TCEEEEEECCTTHHH
T ss_pred CeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecC-CeEEEecCCHHHHHH
Confidence 589999999999887 9999999999752 012222222 233443332
Q ss_pred -----------------c---CC-------------CCCCChhhhhhc-ccccCCCCCHHHHHHHHHH-----------h
Q psy1686 223 -----------------Y---SS-------------PHGIPIDLLDRM-VIIPTQPYQDEEIQAILKI-----------R 257 (448)
Q Consensus 223 -----------------e---np-------------~~~Ip~~lLSR~-~ii~~~pys~~eI~~IL~~-----------R 257 (448)
. +| .+.++++|++|| .++.|.||+.+++..|+.. +
T Consensus 217 ~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~ 296 (376)
T 1um8_A 217 IIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQL 296 (376)
T ss_dssp HTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHH
T ss_pred HHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHH
Confidence 1 11 345789999999 7999999999999999851 1
Q ss_pred ------c--CCHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhhhh-----CC-CcccHHHHHHHHH
Q psy1686 258 ------L--MQTDGLRVLTKIAL--DTSLRYAIQLITTASVVCRRR-----KA-TEICMEDIRKVYA 308 (448)
Q Consensus 258 ------a--i~deal~~La~~a~--~Gd~R~AL~lLe~a~~~a~~~-----~~-~~It~e~V~~~~~ 308 (448)
. ++++++++|++.+. .|++|...++++.+...+..+ +. ..||.++|++...
T Consensus 297 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~ 363 (376)
T 1um8_A 297 FKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAE 363 (376)
T ss_dssp HHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSSC
T ss_pred HhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCCCC
Confidence 1 99999999999973 399999999999987643211 11 2588888876543
No 36
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.35 E-value=2.1e-11 Score=118.15 Aligned_cols=122 Identities=25% Similarity=0.271 Sum_probs=89.0
Q ss_pred cCeEEEEeccCCCC-----------HHHHHHHHHhhhhcCC-----C-eEEEEecCceeEeeccccCCCCCCChhhhhhc
Q psy1686 175 VPGVLFIDEVHMLD-----------IECFSFLNRALESEMS-----P-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRM 237 (448)
Q Consensus 175 ~~~VLfIDEVH~L~-----------~~~f~~Llk~lEe~~~-----p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~ 237 (448)
.++||||||+|.+. ...++.|+..++..+. . ++|.+||. +..+++++++||
T Consensus 113 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~------------~~~l~~~l~~R~ 180 (297)
T 3b9p_A 113 QPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNR------------PQELDEAALRRF 180 (297)
T ss_dssp CSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESC------------GGGBCHHHHHHC
T ss_pred CCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCC------------hhhCCHHHHhhC
Confidence 36899999999883 4567778888887653 1 33344443 557899999999
Q ss_pred -ccccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHH-HHHHHHHHHhhhhC------------CCc
Q psy1686 238 -VIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAI-QLITTASVVCRRRK------------ATE 297 (448)
Q Consensus 238 -~ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL-~lLe~a~~~a~~~~------------~~~ 297 (448)
..+.+.+++.++...|++..+ +++++++.|++.+ .|..+.+| ++++.|...+..+. ...
T Consensus 181 ~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~-~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~ 259 (297)
T 3b9p_A 181 TKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKIT-DGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRA 259 (297)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHT-TTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCC
T ss_pred CeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCC
Confidence 488889999999888887543 8899999999998 77665555 66676655543321 246
Q ss_pred ccHHHHHHHHHH
Q psy1686 298 ICMEDIRKVYAL 309 (448)
Q Consensus 298 It~e~V~~~~~l 309 (448)
|+.+|+..++..
T Consensus 260 i~~~d~~~a~~~ 271 (297)
T 3b9p_A 260 ITEQDFHSSLKR 271 (297)
T ss_dssp CCHHHHHHHTTS
T ss_pred cCHHHHHHHHHH
Confidence 889998887754
No 37
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.34 E-value=2.3e-11 Score=120.52 Aligned_cols=104 Identities=18% Similarity=0.163 Sum_probs=79.4
Q ss_pred cCeEEEEeccCCCCH-----------HHHHHHHHhhhhcC---CC-eEEEEecCceeEeeccccCCCCCCChhhhhhcc-
Q psy1686 175 VPGVLFIDEVHMLDI-----------ECFSFLNRALESEM---SP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV- 238 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~-----------~~f~~Llk~lEe~~---~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~- 238 (448)
.++||||||||.|.. ..++.|+..++... .. +||.+||. +..+++++++||.
T Consensus 110 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~------------~~~ld~al~~Rf~~ 177 (322)
T 3eie_A 110 KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI------------PWQLDSAIRRRFER 177 (322)
T ss_dssp SSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESC------------GGGSCHHHHHHCCE
T ss_pred CCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCC------------hhhCCHHHHcccCe
Confidence 368999999999853 34677777777542 23 33334443 6779999999994
Q ss_pred cccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy1686 239 IIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 239 ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a 290 (448)
.+.+.+++.++..+|++..+ ++++.++.|++.+.+.+.++.-+++..|...|
T Consensus 178 ~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a 235 (322)
T 3eie_A 178 RIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQP 235 (322)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHH
T ss_pred EEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 88999999999999998655 78999999999983338888888888776554
No 38
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.33 E-value=1e-11 Score=133.67 Aligned_cols=132 Identities=16% Similarity=0.221 Sum_probs=95.1
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEe--------------cCceeEeeccccCCCCCCChhhhhhcc---
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITAT--------------NRGVTKIRGTAYSSPHGIPIDLLDRMV--- 238 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT--------------~~~i~lI~~Ttenp~~~Ip~~lLSR~~--- 238 (448)
+++|||||+|+|+..+|+.|++++|+...... .. .-.+.+|.+|+.++.+.++++|++||.
T Consensus 202 ~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~--g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~~l~~R~~v~~ 279 (604)
T 3k1j_A 202 KGVLFIDEIATLSLKMQQSLLTAMQEKKFPIT--GQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPALRSRIRGYG 279 (604)
T ss_dssp TSEEEETTGGGSCHHHHHHHHHHHHHSEECCB--CSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCHHHHHHHHHHS
T ss_pred CCEEEEechhhCCHHHHHHHHHHHHcCcEEec--ccccccccccCCCCccceeEEEEEecCHHHHhhcCHHHHHHhhccc
Confidence 47999999999999999999999995421000 00 011234444443344678999999994
Q ss_pred -cccCC---CCCHHHHHHHHHHhc-----------CCHHHHHHHHHHcC--CC-------CHHHHHHHHHHHHHHhhhhC
Q psy1686 239 -IIPTQ---PYQDEEIQAILKIRL-----------MQTDGLRVLTKIAL--DT-------SLRYAIQLITTASVVCRRRK 294 (448)
Q Consensus 239 -ii~~~---pys~~eI~~IL~~Ra-----------i~deal~~La~~a~--~G-------d~R~AL~lLe~a~~~a~~~~ 294 (448)
.+.|. +.+.+.+..+++..+ ++++|+..|.+++. .| +.|.+.++++.|..+|..++
T Consensus 280 i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~ 359 (604)
T 3k1j_A 280 YEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKG 359 (604)
T ss_dssp EEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTT
T ss_pred eEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcC
Confidence 44544 335555665554211 89999999998763 44 59999999999988887677
Q ss_pred CCcccHHHHHHHHHH
Q psy1686 295 ATEICMEDIRKVYAL 309 (448)
Q Consensus 295 ~~~It~e~V~~~~~l 309 (448)
...|+.+||+++...
T Consensus 360 ~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 360 KKYVEREDVIEAVKM 374 (604)
T ss_dssp CSSBCHHHHHHHHHH
T ss_pred cccccHHHHHHHHHh
Confidence 889999999999864
No 39
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.32 E-value=1.4e-10 Score=116.99 Aligned_cols=103 Identities=18% Similarity=0.182 Sum_probs=80.9
Q ss_pred CeEEEEeccCCCCH-----------HHHHHHHHhhhhcC---CC-eEEEEecCceeEeeccccCCCCCCChhhhhhc-cc
Q psy1686 176 PGVLFIDEVHMLDI-----------ECFSFLNRALESEM---SP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRM-VI 239 (448)
Q Consensus 176 ~~VLfIDEVH~L~~-----------~~f~~Llk~lEe~~---~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~-~i 239 (448)
++||||||+|.|.. ..++.|+..++... .. +||.+||. +..+++++++|| ..
T Consensus 144 ~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~------------~~~ld~al~rRf~~~ 211 (355)
T 2qp9_X 144 PSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI------------PWQLDSAIRRRFERR 211 (355)
T ss_dssp SEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESC------------GGGSCHHHHHTCCEE
T ss_pred CeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCC------------cccCCHHHHcccCEE
Confidence 68999999999963 34677777777432 22 33444444 667999999999 58
Q ss_pred ccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhh
Q psy1686 240 IPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDT-SLRYAIQLITTASVVCR 291 (448)
Q Consensus 240 i~~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~G-d~R~AL~lLe~a~~~a~ 291 (448)
+.+.+.+.++..+||+..+ +++..++.|++.+ .| +.|+.-+++..|...|.
T Consensus 212 i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t-~G~sg~dl~~l~~~A~~~a~ 269 (355)
T 2qp9_X 212 IYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMT-EGYSGSDIAVVVKDALMQPI 269 (355)
T ss_dssp EECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHT-TTCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHH
Confidence 8999999999999998655 6899999999999 66 88888888888877654
No 40
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.28 E-value=1.5e-11 Score=118.25 Aligned_cols=210 Identities=9% Similarity=0.097 Sum_probs=116.7
Q ss_pred cccccccCccCCCCCCCCCccccccccccchhh----hhhhHHHHHHHhcCCC-CCCCcccccCCCCCcch-hh-hhhhc
Q psy1686 17 ERVGAHSHIRGLGLDDSLEPRKVSQGMVGQLQA----RRAAGVVLGMIKEEVV-MVWPCVMCGRGKNPQKV-KK-ISTAT 89 (448)
Q Consensus 17 ~~~~~hsHi~glgL~~~~~p~~~~~~~VGQ~~~----r~a~~~l~~mI~~~ki-~gpf~~~~G~ei~GKtt-~~-I~~~~ 89 (448)
.|.+.|++-...|+++.--......+++||... .+....+.++++...- ..+.+.++||+..|||+ |+ |....
T Consensus 9 ~~~~~~~~~~~fg~~~~~l~~~~~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 9 HHGSTMDIKPAFGTNQEDYASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp ----------------CCSTTTCTTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCccccCCCCCCCHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 345667777778987543344446889999655 4445557777763321 22347799998558875 54 22222
Q ss_pred cCccccccCCCccCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCC-CCCchHHHHHHHHHHHHHHH
Q psy1686 90 GREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDT-GEITPEVREQISAKVTEWRE 168 (448)
Q Consensus 90 gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~-~eI~~eiR~~I~~~v~~~~~ 168 (448)
| .+|+.+.+++ + + .|.. .+-...+++.+..+ .
T Consensus 89 ~--------------~~~~~i~~~~----------------~--------~----~g~~~~~~~~~~~~~~~~~----~- 121 (272)
T 1d2n_A 89 N--------------FPFIKICSPD----------------K--------M----IGFSETAKCQAMKKIFDDA----Y- 121 (272)
T ss_dssp T--------------CSEEEEECGG----------------G--------C----TTCCHHHHHHHHHHHHHHH----H-
T ss_pred C--------------CCEEEEeCHH----------------H--------h----cCCchHHHHHHHHHHHHHH----H-
Confidence 2 1343311110 0 0 0110 00012344433322 1
Q ss_pred hCcccccCeEEEEeccCCC----------CHHHHHHHHHhhhhcC---CCeEEEEecCceeEeeccccCCCCCCCh-hhh
Q psy1686 169 EGKAEIVPGVLFIDEVHML----------DIECFSFLNRALESEM---SPVVITATNRGVTKIRGTAYSSPHGIPI-DLL 234 (448)
Q Consensus 169 ~g~~~i~~~VLfIDEVH~L----------~~~~f~~Llk~lEe~~---~pi~IlaT~~~i~lI~~Ttenp~~~Ip~-~lL 234 (448)
.+ .+++|||||||.| ....+++|...++... .+++|++|+. ++..+++ .++
T Consensus 122 ~~----~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn-----------~~~~l~~~~l~ 186 (272)
T 1d2n_A 122 KS----QLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTS-----------RKDVLQEMEML 186 (272)
T ss_dssp TS----SEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEES-----------CHHHHHHTTCT
T ss_pred hc----CCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecC-----------Chhhcchhhhh
Confidence 11 2589999999997 5567777877777532 2343433332 1222333 578
Q ss_pred hh-cccccCCCCCH-HHHHHHHHHhc-CCHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHH
Q psy1686 235 DR-MVIIPTQPYQD-EEIQAILKIRL-MQTDGLRVLTKIALDT-----SLRYAIQLITTASVV 289 (448)
Q Consensus 235 SR-~~ii~~~pys~-~eI~~IL~~Ra-i~deal~~La~~a~~G-----d~R~AL~lLe~a~~~ 289 (448)
+| |..|.+.|++. ++|.+++.... ++++++..|++.+ .| ++|.++++++.|...
T Consensus 187 ~rf~~~i~~p~l~~r~~i~~i~~~~~~~~~~~~~~l~~~~-~g~~~~g~ir~l~~~l~~a~~~ 248 (272)
T 1d2n_A 187 NAFSTTIHVPNIATGEQLLEALELLGNFKDKERTTIAQQV-KGKKVWIGIKKLLMLIEMSLQM 248 (272)
T ss_dssp TTSSEEEECCCEEEHHHHHHHHHHHTCSCHHHHHHHHHHH-TTSEEEECHHHHHHHHHHHTTS
T ss_pred cccceEEcCCCccHHHHHHHHHHhcCCCCHHHHHHHHHHh-cCCCccccHHHHHHHHHHHhhh
Confidence 88 57899999998 88999988444 9999999999998 66 999999999988543
No 41
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.27 E-value=9.8e-11 Score=117.97 Aligned_cols=122 Identities=22% Similarity=0.241 Sum_probs=89.3
Q ss_pred CeEEEEeccCCCC-----------HHHHHHHHHhhhhcC----CC-eEEEEecCceeEeeccccCCCCCCChhhhhhcc-
Q psy1686 176 PGVLFIDEVHMLD-----------IECFSFLNRALESEM----SP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV- 238 (448)
Q Consensus 176 ~~VLfIDEVH~L~-----------~~~f~~Llk~lEe~~----~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~- 238 (448)
++||||||||.|. ...++.|+..++... .. +||.+||. +..+++++++||.
T Consensus 177 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~------------~~~l~~~l~~Rf~~ 244 (357)
T 3d8b_A 177 PAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNR------------PQEIDEAARRRLVK 244 (357)
T ss_dssp SEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESC------------GGGBCHHHHTTCCE
T ss_pred CeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCC------------hhhCCHHHHhhCce
Confidence 6899999999883 245667777777432 22 33334433 6679999999996
Q ss_pred cccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhhhh------------CCCccc
Q psy1686 239 IIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDT-SLRYAIQLITTASVVCRRR------------KATEIC 299 (448)
Q Consensus 239 ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~G-d~R~AL~lLe~a~~~a~~~------------~~~~It 299 (448)
.+.+.+++.++..++++..+ +++++++.|++.+ .| +.++.-++...|...+..+ ....|+
T Consensus 245 ~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t-~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~ 323 (357)
T 3d8b_A 245 RLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQS-DAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIA 323 (357)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHT-TTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBC
T ss_pred EEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcC
Confidence 88999999999999887544 7899999999998 66 8887777777776544321 234689
Q ss_pred HHHHHHHHHHh
Q psy1686 300 MEDIRKVYALF 310 (448)
Q Consensus 300 ~e~V~~~~~lf 310 (448)
.+|+..++..+
T Consensus 324 ~~d~~~al~~~ 334 (357)
T 3d8b_A 324 YIDFENAFRTV 334 (357)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99998888643
No 42
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.26 E-value=1.2e-10 Score=110.92 Aligned_cols=210 Identities=17% Similarity=0.231 Sum_probs=133.2
Q ss_pred ccccccccccchhhhhhhHHHHHHHhcC--------CCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 36 PRKVSQGMVGQLQARRAAGVVLGMIKEE--------VVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 36 p~~~~~~~VGQ~~~r~a~~~l~~mI~~~--------ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
|...|++++|++++.+...-+...++.. +.+ +.+.++||+..|||+ ++...+ ..+ .+
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~vll~G~~GtGKT~la~~la~-------~~~------~~ 72 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIP-KGVLMVGPPGTGKTLLAKAIAG-------EAK------VP 72 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCC-CEEEEECCTTSCHHHHHHHHHH-------HHT------CC
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCC-CeEEEECcCCCCHHHHHHHHHH-------HcC------CC
Confidence 3445899999999988865555544432 112 236799998558876 553311 111 12
Q ss_pred ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 107 DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
|+.+...++. ..+. ++-...++.....+. .+ .+.++||||||.
T Consensus 73 ~~~i~~~~~~-------------------------~~~~---~~~~~~~~~~~~~a~-----~~----~~~il~iDeid~ 115 (257)
T 1lv7_A 73 FFTISGSDFV-------------------------EMFV---GVGASRVRDMFEQAK-----KA----APCIIFIDEIDA 115 (257)
T ss_dssp EEEECSCSST-------------------------TSCC---CCCHHHHHHHHHHHH-----TT----CSEEEEETTHHH
T ss_pred EEEEeHHHHH-------------------------HHhh---hhhHHHHHHHHHHHH-----Hc----CCeeehhhhhhh
Confidence 3332221111 1111 122245555444331 11 368999999988
Q ss_pred CCH--------------HHHHHHHHhhhhcC--CC-eEEEEecCceeEeeccccCCCCCCChhhhh--hcc-cccCCCCC
Q psy1686 187 LDI--------------ECFSFLNRALESEM--SP-VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-IIPTQPYQ 246 (448)
Q Consensus 187 L~~--------------~~f~~Llk~lEe~~--~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-ii~~~pys 246 (448)
+.. ..++.|+..++... .+ ++|.+||. +..+++++++ |+. .+.+.+.+
T Consensus 116 l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~------------~~~l~~~l~r~~rf~~~i~i~~P~ 183 (257)
T 1lv7_A 116 VGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNR------------PDVLDPALLRPGRFDRQVVVGLPD 183 (257)
T ss_dssp HTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESC------------TTTSCGGGGSTTSSCEEEECCCCC
T ss_pred hccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCC------------chhCCHHHcCCCcCCeEEEeCCCC
Confidence 743 34566666666432 22 44444444 5678888887 663 78888889
Q ss_pred HHHHHHHHHHhc----CCHHH-HHHHHHHcCCC-CHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 247 DEEIQAILKIRL----MQTDG-LRVLTKIALDT-SLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 247 ~~eI~~IL~~Ra----i~dea-l~~La~~a~~G-d~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
.++-.+|++... +++++ +.+++... .| +.|+.-+++..|...|..++...|+.+++++++..
T Consensus 184 ~~~r~~il~~~~~~~~l~~~~~~~~la~~~-~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 251 (257)
T 1lv7_A 184 VRGREQILKVHMRRVPLAPDIDAAIIARGT-PGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDK 251 (257)
T ss_dssp HHHHHHHHHHHHTTSCBCTTCCHHHHHHTC-TTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCccccHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 999888888544 44443 67788877 88 99999999999998887667778999999998864
No 43
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.25 E-value=3.7e-11 Score=113.47 Aligned_cols=121 Identities=18% Similarity=0.191 Sum_probs=76.1
Q ss_pred CeEEEEeccCCC------------CHHHHHHHHHhhhh---c--CCC-eEEEEecCceeEeeccccCCCCCCChhhhh--
Q psy1686 176 PGVLFIDEVHML------------DIECFSFLNRALES---E--MSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLD-- 235 (448)
Q Consensus 176 ~~VLfIDEVH~L------------~~~~f~~Llk~lEe---~--~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS-- 235 (448)
++||||||+|.| +.+.+..|+..++. . ..+ ++|.+||. +..+++++++
T Consensus 99 ~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~------------~~~ld~~l~~~~ 166 (262)
T 2qz4_A 99 PCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNR------------ADILDGALMRPG 166 (262)
T ss_dssp SEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESC------------GGGGGSGGGSTT
T ss_pred CeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCC------------hhhcCHHHhcCC
Confidence 689999999999 33344444444443 1 122 33333333 5567888988
Q ss_pred hc-ccccCCCCCHHHHHHHHHHhc------CCHH-HHHHHHHHcCCC-CHHHHHHHHHHHHHHhhhhCCCcccHHHHHHH
Q psy1686 236 RM-VIIPTQPYQDEEIQAILKIRL------MQTD-GLRVLTKIALDT-SLRYAIQLITTASVVCRRRKATEICMEDIRKV 306 (448)
Q Consensus 236 R~-~ii~~~pys~~eI~~IL~~Ra------i~de-al~~La~~a~~G-d~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~ 306 (448)
|+ ..+.+.+++.++..+|++..+ .+++ .+..|++.+ .| +.|..-+++..|...|..++...|+.++++++
T Consensus 167 R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a 245 (262)
T 2qz4_A 167 RLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELT-PGFSGADIANICNEAALHAAREGHTSVHTLNFEYA 245 (262)
T ss_dssp SCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTC-TTCCHHHHHHHHHHHHTC--------CCBCCHHHH
T ss_pred cCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 88 588899999999999998644 4444 357888887 55 77888888888877665556678999999988
Q ss_pred HHH
Q psy1686 307 YAL 309 (448)
Q Consensus 307 ~~l 309 (448)
+..
T Consensus 246 ~~~ 248 (262)
T 2qz4_A 246 VER 248 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 44
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.25 E-value=3.7e-10 Score=112.38 Aligned_cols=190 Identities=17% Similarity=0.125 Sum_probs=120.4
Q ss_pred ccccccccccchhhhhhhHHHHHHHhc---------C-CCCCCCcccccCCCCCcch-hhhh-hhccCccccccCCCccC
Q psy1686 36 PRKVSQGMVGQLQARRAAGVVLGMIKE---------E-VVMVWPCVMCGRGKNPQKV-KKIS-TATGREEEPDYDGWLAD 103 (448)
Q Consensus 36 p~~~~~~~VGQ~~~r~a~~~l~~mI~~---------~-ki~gpf~~~~G~ei~GKtt-~~I~-~~~gk~~a~~~d~~~~~ 103 (448)
|...+++++|++.+++. |.++|.. + .-+..-+.++|||..|||+ ++.. ...+ +
T Consensus 7 ~~~~~~di~G~~~~k~~---l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-------~----- 71 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEA---LKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-------N----- 71 (322)
T ss_dssp CCCCGGGSCSCHHHHHH---HHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-------S-----
T ss_pred CCCCHHHhcCHHHHHHH---HHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-------C-----
Confidence 55568999999999876 4555531 1 1111237789999558875 5522 2221 0
Q ss_pred CCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEec
Q psy1686 104 VTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDE 183 (448)
Q Consensus 104 ~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDE 183 (448)
..|+.+...++ .+.-.++....+|+....+. .. .+.|+||||
T Consensus 72 -~~~~~i~~~~l----------------------------~~~~~g~~~~~~~~lf~~a~-----~~----~~~vl~iDE 113 (322)
T 1xwi_A 72 -STFFSISSSDL----------------------------VSKWLGESEKLVKNLFQLAR-----EN----KPSIIFIDE 113 (322)
T ss_dssp -CEEEEEECCSS----------------------------CCSSCCSCHHHHHHHHHHHH-----HT----SSEEEEEET
T ss_pred -CcEEEEEhHHH----------------------------HhhhhhHHHHHHHHHHHHHH-----hc----CCcEEEeec
Confidence 13333211111 11112233355555554332 11 368999999
Q ss_pred cCCCC-----------HHHHHHHHHhhhhcC---CC-eEEEEecCceeEeeccccCCCCCCChhhhhhc-ccccCCCCCH
Q psy1686 184 VHMLD-----------IECFSFLNRALESEM---SP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRM-VIIPTQPYQD 247 (448)
Q Consensus 184 VH~L~-----------~~~f~~Llk~lEe~~---~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~-~ii~~~pys~ 247 (448)
+|.+. ....+.|+..++... .. +||.+||. +..+++++++|| ..+.+.+.+.
T Consensus 114 id~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~------------~~~ld~al~rRf~~~i~i~~P~~ 181 (322)
T 1xwi_A 114 IDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI------------PWVLDSAIRRRFEKRIYIPLPEP 181 (322)
T ss_dssp TTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESC------------TTTSCHHHHHTCCEEEECCCCCH
T ss_pred HHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCC------------cccCCHHHHhhcCeEEEeCCcCH
Confidence 99982 244666777776532 22 33344444 778999999999 5899999999
Q ss_pred HHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy1686 248 EEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 248 ~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a 290 (448)
++..+|++..+ +++..++.|++.+.+.+.++--++...|...|
T Consensus 182 ~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a 230 (322)
T 1xwi_A 182 HARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQP 230 (322)
T ss_dssp HHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99999998644 68999999999983347888888888776544
No 45
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.22 E-value=8.6e-12 Score=130.47 Aligned_cols=200 Identities=15% Similarity=0.126 Sum_probs=124.9
Q ss_pred CCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCC
Q psy1686 27 GLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVT 105 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~ 105 (448)
+..|.+..+|.. ++.+|||++..+. +.+.+......+ +.++|||..|||+ ++..... ...
T Consensus 167 ~~~l~~~~r~~~-ld~iiGr~~~i~~---l~~~l~r~~~~~--~LL~G~pG~GKT~la~~la~~-------l~~------ 227 (468)
T 3pxg_A 167 ARDLTAIAKEDS-LDPVIGRSKEIQR---VIEVLSRRTKNN--PVLIGEPGVGKTAIAEGLAQQ-------IIN------ 227 (468)
T ss_dssp CCBHHHHTTSSC-SCCCCCCHHHHHH---HHHHHHCSSSCE--EEEESCTTTTTHHHHHHHHHH-------HHS------
T ss_pred HHHHHHHHhcCC-CCCccCcHHHHHH---HHHHHhccCCCC--eEEECCCCCCHHHHHHHHHHH-------HHh------
Confidence 445666778887 7999999998765 667776665566 5699999558876 4422111 000
Q ss_pred CccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccC
Q psy1686 106 KDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVH 185 (448)
Q Consensus 106 ~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH 185 (448)
.++| .. .....+..+|+. + ...++....++..++.+. .. .++|||||
T Consensus 228 ~~~p--~~--------l~~~~~~~l~~~-~----------~~~g~~e~~~~~~~~~~~-----~~----~~~iLfiD--- 274 (468)
T 3pxg_A 228 NEVP--EI--------LRDKRVMTLDMG-T----------KYRGEFEDRLKKVMDEIR-----QA----GNIILFID--- 274 (468)
T ss_dssp SCSC--TT--------TSSCCEECC---------------------CTTHHHHHHHHH-----TC----CCCEEEEC---
T ss_pred CCCC--hh--------hcCCeEEEeeCC-c----------cccchHHHHHHHHHHHHH-----hc----CCeEEEEe---
Confidence 0111 10 001122233333 1 112333356666665442 11 25899999
Q ss_pred CCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCC---CCCChhhhhhcccccCCCCCHHHHHHHHHHhc----
Q psy1686 186 MLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSP---HGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL---- 258 (448)
Q Consensus 186 ~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~---~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra---- 258 (448)
.+.++++.|+++++. +.+.+|++||.+++ +.+++++++||.++.+.+++.+++.+||+..+
T Consensus 275 -~~~~a~~~L~~~L~~-----------g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~ 342 (468)
T 3pxg_A 275 -AAIDASNILKPSLAR-----------GELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYE 342 (468)
T ss_dssp -C--------CCCTTS-----------SSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSG
T ss_pred -CchhHHHHHHHhhcC-----------CCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHH
Confidence 567888999999983 56777788876653 56899999999999999999999999998533
Q ss_pred ------CCHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHh
Q psy1686 259 ------MQTDGLRVLTKIAL-----DTSLRYAIQLITTASVVC 290 (448)
Q Consensus 259 ------i~deal~~La~~a~-----~Gd~R~AL~lLe~a~~~a 290 (448)
++++++..+++++. ..-.++|+++|+.|...+
T Consensus 343 ~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~ 385 (468)
T 3pxg_A 343 AHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKV 385 (468)
T ss_dssp GGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHH
Confidence 89999999999861 224678999999887544
No 46
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.22 E-value=3.2e-11 Score=116.94 Aligned_cols=114 Identities=18% Similarity=0.263 Sum_probs=85.0
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC------------CCeEEEEecCceeEeeccc--cC---C---------CCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM------------SPVVITATNRGVTKIRGTA--YS---S---------PHGI 229 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~------------~pi~IlaT~~~i~lI~~Tt--en---p---------~~~I 229 (448)
++|+||||+|.++.+.++.|++.+|+.. ..+||++||.+...|.... .. . ...+
T Consensus 120 ~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~ 199 (311)
T 4fcw_A 120 YSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHF 199 (311)
T ss_dssp SEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHS
T ss_pred CeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhC
Confidence 4899999999999999999999999864 1235556554210000000 00 0 1246
Q ss_pred Chhhhhhc-ccccCCCCCHHHHHHHHHHhc---------------CCHHHHHHHHHHcC--CCCHHHHHHHHHHHHHH
Q psy1686 230 PIDLLDRM-VIIPTQPYQDEEIQAILKIRL---------------MQTDGLRVLTKIAL--DTSLRYAIQLITTASVV 289 (448)
Q Consensus 230 p~~lLSR~-~ii~~~pys~~eI~~IL~~Ra---------------i~deal~~La~~a~--~Gd~R~AL~lLe~a~~~ 289 (448)
+++|++|| .++.|.|++.+++.+|++... ++++++++|++.+. .|++|..-++++.+...
T Consensus 200 ~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~ 277 (311)
T 4fcw_A 200 RPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELET 277 (311)
T ss_dssp CHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHH
T ss_pred CHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHH
Confidence 88999999 699999999999999987521 89999999999985 58999999999887543
No 47
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.19 E-value=6.4e-11 Score=126.28 Aligned_cols=131 Identities=18% Similarity=0.229 Sum_probs=88.7
Q ss_pred CeEEEEeccCCCCHH----HHHHHHHhhhhcCCCeEEEE------ecCceeEeeccccCCCCCCChhhhhhcccccCCCC
Q psy1686 176 PGVLFIDEVHMLDIE----CFSFLNRALESEMSPVVITA------TNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPY 245 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~----~f~~Llk~lEe~~~pi~Ila------T~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~py 245 (448)
.+|+||||||.+..+ .++.|++.+++.....|.-. ....+.+| +|.|++..+|++|++||.+|.|.+|
T Consensus 176 ~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI--~ttN~~~~l~~aL~~R~~vi~~~~~ 253 (543)
T 3m6a_A 176 NPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI--ATANNLATIPGPLRDRMEIINIAGY 253 (543)
T ss_dssp SEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE--EECSSTTTSCHHHHHHEEEEECCCC
T ss_pred CCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE--eccCccccCCHHHHhhcceeeeCCC
Confidence 479999999999887 46999999976432111000 00112222 1223477899999999999999999
Q ss_pred CHHHHHHHHHHhc----------------CCHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHhhh------hCCCcccHHH
Q psy1686 246 QDEEIQAILKIRL----------------MQTDGLRVLTK-IALDTSLRYAIQLITTASVVCRR------RKATEICMED 302 (448)
Q Consensus 246 s~~eI~~IL~~Ra----------------i~deal~~La~-~a~~Gd~R~AL~lLe~a~~~a~~------~~~~~It~e~ 302 (448)
+.++..+|++... ++++++..|++ +...|++|..-+.++.+...+.. .+...|+.++
T Consensus 254 ~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~ 333 (543)
T 3m6a_A 254 TEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKN 333 (543)
T ss_dssp CHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHH
Confidence 9999999987521 78999998877 55457888888888776544321 1334699999
Q ss_pred HHHHHH
Q psy1686 303 IRKVYA 308 (448)
Q Consensus 303 V~~~~~ 308 (448)
++++++
T Consensus 334 l~~~Lg 339 (543)
T 3m6a_A 334 LQDFIG 339 (543)
T ss_dssp THHHHC
T ss_pred HHHHhC
Confidence 999885
No 48
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.15 E-value=7e-11 Score=112.92 Aligned_cols=120 Identities=18% Similarity=0.248 Sum_probs=85.7
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC------------CCeEEEEecCceeEeeccccCCCCCCChhhhhhcc--ccc
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM------------SPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV--IIP 241 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~------------~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~--ii~ 241 (448)
.++|||||||.++.+.|+.|++.+++.. ...+|++||....-. -. ...+.++|++|+. .+.
T Consensus 101 ~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~---~~--~~~~~~~L~~Rl~~~~i~ 175 (265)
T 2bjv_A 101 GGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAM---VN--EGTFRADLLDALAFDVVQ 175 (265)
T ss_dssp TSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHH---HH--HTSSCHHHHHHHCSEEEE
T ss_pred CcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHH---HH--cCCccHHHHHhhcCcEEe
Confidence 4899999999999999999999999741 124555555411000 00 1135799999984 588
Q ss_pred CCCCCH--HHHHHHHHHh--------------cCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHH
Q psy1686 242 TQPYQD--EEIQAILKIR--------------LMQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDI 303 (448)
Q Consensus 242 ~~pys~--~eI~~IL~~R--------------ai~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V 303 (448)
+.|+.. +|+..+++.. .++++++++|..++..|++|...++++.+...+. +..|+.+++
T Consensus 176 lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~~---~~~i~~~~l 250 (265)
T 2bjv_A 176 LPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG---TSDYPLDDI 250 (265)
T ss_dssp CCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHC---CSSSCBCCC
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC---CCcCcHHHc
Confidence 999986 6776554321 1689999999988778999999999999876652 345665554
No 49
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.13 E-value=9.5e-11 Score=128.66 Aligned_cols=227 Identities=18% Similarity=0.225 Sum_probs=140.2
Q ss_pred CCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCC
Q psy1686 27 GLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVT 105 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~ 105 (448)
+.+|.+..+|.. ++.+|||++..+. +.+.+...+-.+ +.++|++..|||+ ++..... ..+
T Consensus 173 ~~~l~~~~~~~~-~d~~iGr~~~i~~---l~~~l~~~~~~~--vlL~G~~GtGKT~la~~la~~-------l~~------ 233 (758)
T 1r6b_X 173 TTNLNQLARVGG-IDPLIGREKELER---AIQVLCRRRKNN--PLLVGESGVGKTAIAEGLAWR-------IVQ------ 233 (758)
T ss_dssp SCBHHHHHHTTC-SCCCCSCHHHHHH---HHHHHTSSSSCE--EEEECCTTSSHHHHHHHHHHH-------HHH------
T ss_pred hHhHHHHHhcCC-CCCccCCHHHHHH---HHHHHhccCCCC--eEEEcCCCCCHHHHHHHHHHH-------HHh------
Confidence 344556677887 7999999998654 566666554444 6799999558876 4421110 000
Q ss_pred CccccCCCcccceeeeeeccchhhhhhhccccccchhhhcC--CCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEec
Q psy1686 106 KDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAG--DTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDE 183 (448)
Q Consensus 106 ~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~--~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDE 183 (448)
..+| . ... ...+..+|+ .++..| ..++....++..++.+ ... .++||||||
T Consensus 234 ~~v~--~--~~~------~~~~~~~~~--------~~l~~~~~~~g~~e~~l~~~~~~~-----~~~----~~~iL~IDE 286 (758)
T 1r6b_X 234 GDVP--E--VMA------DCTIYSLDI--------GSLLAGTKYRGDFEKRFKALLKQL-----EQD----TNSILFIDE 286 (758)
T ss_dssp TCSC--G--GGT------TCEEEECCC--------C---CCCCCSSCHHHHHHHHHHHH-----SSS----SCEEEEETT
T ss_pred CCCC--h--hhc------CCEEEEEcH--------HHHhccccccchHHHHHHHHHHHH-----Hhc----CCeEEEEec
Confidence 0011 0 000 000111111 111211 2234434455444332 111 258999999
Q ss_pred cCCC---------CHHHHHHHHHhhhhcCCCeEEEEecCceeEeecccc---CCCCCCChhhhhhcccccCCCCCHHHHH
Q psy1686 184 VHML---------DIECFSFLNRALESEMSPVVITATNRGVTKIRGTAY---SSPHGIPIDLLDRMVIIPTQPYQDEEIQ 251 (448)
Q Consensus 184 VH~L---------~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Tte---np~~~Ip~~lLSR~~ii~~~pys~~eI~ 251 (448)
+|.| ..+.++.|.++++. +.+.+|++|+. ...+.++++|.+||..+.+.+++.++..
T Consensus 287 i~~l~~~~~~~~~~~~~~~~L~~~l~~-----------~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~ 355 (758)
T 1r6b_X 287 IHTIIGAGAASGGQVDAANLIKPLLSS-----------GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETV 355 (758)
T ss_dssp TTTTTTSCCSSSCHHHHHHHHSSCSSS-----------CCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHH
T ss_pred hHHHhhcCCCCcchHHHHHHHHHHHhC-----------CCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHH
Confidence 9999 34567777777773 44555666653 2367788899999999999999999998
Q ss_pred HHHHHhc----------CCHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHhhh----hCCCcccHHHHHHHHHHh
Q psy1686 252 AILKIRL----------MQTDGLRVLTKIAL-----DTSLRYAIQLITTASVVCRR----RKATEICMEDIRKVYALF 310 (448)
Q Consensus 252 ~IL~~Ra----------i~deal~~La~~a~-----~Gd~R~AL~lLe~a~~~a~~----~~~~~It~e~V~~~~~lf 310 (448)
+||+..+ +++++++.+++.+. ......++.+++.|...+.. .+...|+.++|.+++..+
T Consensus 356 ~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~ 433 (758)
T 1r6b_X 356 QIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHh
Confidence 8887422 89999999998861 22456899999988655432 134579999999988754
No 50
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.13 E-value=6.2e-11 Score=113.13 Aligned_cols=121 Identities=21% Similarity=0.334 Sum_probs=87.3
Q ss_pred CeEEEEeccCCCCHH---------------HHHHHHHhhhhcCC---C-eEEEEecCceeEeeccccCCCCCCChhhhh-
Q psy1686 176 PGVLFIDEVHMLDIE---------------CFSFLNRALESEMS---P-VVITATNRGVTKIRGTAYSSPHGIPIDLLD- 235 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~---------------~f~~Llk~lEe~~~---p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS- 235 (448)
++||||||+|.|... .++.|++.+++... + ++|.+||. +..+++++++
T Consensus 104 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~------------~~~ld~~l~r~ 171 (268)
T 2r62_A 104 PSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNR------------PEILDPALMRP 171 (268)
T ss_dssp SCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSC------------CTTSCGGGGSS
T ss_pred CeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCC------------chhcCHhHcCC
Confidence 589999999999653 35566777765432 2 23333332 5668889998
Q ss_pred -hc-ccccCCCCCHHHHHHHHHHhc----CC-HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHH
Q psy1686 236 -RM-VIIPTQPYQDEEIQAILKIRL----MQ-TDGLRVLTKIALDT-SLRYAIQLITTASVVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 236 -R~-~ii~~~pys~~eI~~IL~~Ra----i~-deal~~La~~a~~G-d~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~ 307 (448)
|+ ..+.+.+++.++..++|+..+ +. +..++.|++.+ .| +.|+..++++.|...|...+...|+.+++.+++
T Consensus 172 ~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~-~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~ 250 (268)
T 2r62_A 172 GRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLT-AGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAV 250 (268)
T ss_dssp SSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSS-CSSCHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSC
T ss_pred CCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHH
Confidence 65 479999999999999998655 32 33367788777 55 788999999999887755556789999998876
Q ss_pred HH
Q psy1686 308 AL 309 (448)
Q Consensus 308 ~l 309 (448)
..
T Consensus 251 ~~ 252 (268)
T 2r62_A 251 ER 252 (268)
T ss_dssp TT
T ss_pred HH
Confidence 53
No 51
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.10 E-value=4.7e-10 Score=123.47 Aligned_cols=112 Identities=14% Similarity=0.230 Sum_probs=78.0
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC-----------C-CeEEEEecCceeEeeccccCCCCCCChhhhhhc-ccccC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM-----------S-PVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM-VIIPT 242 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~-----------~-pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~-~ii~~ 242 (448)
++|||||||+.++.+.|+.|++.+|+.. . .++|++||.+...-.......-..++++|++|| .++.|
T Consensus 580 ~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~ 659 (758)
T 3pxi_A 580 YSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVF 659 (758)
T ss_dssp SSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEEC
T ss_pred CeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEec
Confidence 4799999999999999999999999832 2 266666664210000000000011689999999 79999
Q ss_pred CCCCHHHHHHHHHHhc---------------CCHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Q psy1686 243 QPYQDEEIQAILKIRL---------------MQTDGLRVLTKIA--LDTSLRYAIQLITTAS 287 (448)
Q Consensus 243 ~pys~~eI~~IL~~Ra---------------i~deal~~La~~a--~~Gd~R~AL~lLe~a~ 287 (448)
.||+.+++.+|++... ++++++++|++.+ -.|++|..-+.++++.
T Consensus 660 ~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v 721 (758)
T 3pxi_A 660 HSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHV 721 (758)
T ss_dssp C--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHH
Confidence 9999999999887422 8999999998853 3567777777777553
No 52
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.10 E-value=7.6e-10 Score=115.00 Aligned_cols=103 Identities=18% Similarity=0.181 Sum_probs=80.2
Q ss_pred cCeEEEEeccCCCC-----------HHHHHHHHHhhhhcC---CC-eEEEEecCceeEeeccccCCCCCCChhhhhhcc-
Q psy1686 175 VPGVLFIDEVHMLD-----------IECFSFLNRALESEM---SP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV- 238 (448)
Q Consensus 175 ~~~VLfIDEVH~L~-----------~~~f~~Llk~lEe~~---~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~- 238 (448)
.++||||||||.|. ...++.|+..+++.. .. +||.+||. +..+++++++||.
T Consensus 227 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~------------~~~ld~al~rRf~~ 294 (444)
T 2zan_A 227 KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI------------PWVLDSAIRRRFEK 294 (444)
T ss_dssp CSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESC------------GGGSCHHHHTTCCE
T ss_pred CCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCC------------ccccCHHHHhhcce
Confidence 36999999999983 356777888887642 22 44445544 6789999999994
Q ss_pred cccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHh
Q psy1686 239 IIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDT-SLRYAIQLITTASVVC 290 (448)
Q Consensus 239 ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~G-d~R~AL~lLe~a~~~a 290 (448)
++.+.+.+.++...|++..+ +++..++.|++.+ .| +.|+--+++..|...|
T Consensus 295 ~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t-~G~sgadl~~l~~~a~~~a 352 (444)
T 2zan_A 295 RIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKT-DGYSGADISIIVRDALMQP 352 (444)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHT-TTCCHHHHHHHHHHHHTHH
T ss_pred EEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHH
Confidence 88899999999999998654 7899999999998 66 8888888888776554
No 53
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.09 E-value=1.2e-09 Score=115.02 Aligned_cols=212 Identities=19% Similarity=0.253 Sum_probs=134.2
Q ss_pred CccccccccccchhhhhhhHHHHHHHhcC--------CCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCC
Q psy1686 35 EPRKVSQGMVGQLQARRAAGVVLGMIKEE--------VVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVT 105 (448)
Q Consensus 35 ~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~--------ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~ 105 (448)
.|+..|++++|++.+.+...-+.+.++.. +++. .+.++|||..|||+ ++...+ ..+ .
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~-gvLL~GppGtGKT~Laraia~-------~~~------~ 75 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPK-GILLVGPPGTGKTLLARAVAG-------EAN------V 75 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCS-EEEEECCTTSSHHHHHHHHHH-------HHT------C
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCC-eEEEECCCCCCHHHHHHHHHH-------HcC------C
Confidence 34556899999999987755444444321 2221 27799999558876 553321 111 1
Q ss_pred CccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccC
Q psy1686 106 KDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVH 185 (448)
Q Consensus 106 ~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH 185 (448)
+|+.+...++ ...+.|. -...+|..+..+.. + .|.||||||+|
T Consensus 76 ~f~~is~~~~-------------------------~~~~~g~---~~~~~r~lf~~A~~-----~----~p~ILfIDEid 118 (476)
T 2ce7_A 76 PFFHISGSDF-------------------------VELFVGV---GAARVRDLFAQAKA-----H----APCIVFIDEID 118 (476)
T ss_dssp CEEEEEGGGT-------------------------TTCCTTH---HHHHHHHHHHHHHH-----T----CSEEEEEETGG
T ss_pred CeeeCCHHHH-------------------------HHHHhcc---cHHHHHHHHHHHHh-----c----CCCEEEEechh
Confidence 3433211111 1111111 11456665554421 1 37999999999
Q ss_pred CCCH--------------HHHHHHHHhhhhcC--CC-eEEEEecCceeEeeccccCCCCCCChhhhh--hcc-cccCCCC
Q psy1686 186 MLDI--------------ECFSFLNRALESEM--SP-VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-IIPTQPY 245 (448)
Q Consensus 186 ~L~~--------------~~f~~Llk~lEe~~--~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-ii~~~py 245 (448)
.|.. ..++.|+..++... .+ ++|.+||. +..+.++++. |+- .+.+.+.
T Consensus 119 ~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~------------~~~Ld~allR~gRFd~~i~i~~P 186 (476)
T 2ce7_A 119 AVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNR------------PDILDPALLRPGRFDKKIVVDPP 186 (476)
T ss_dssp GTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESC------------GGGSCGGGGSTTSSCEEEECCCC
T ss_pred hhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCC------------hhhhchhhcccCcceeEeecCCC
Confidence 9843 34667777776422 22 44444444 5567788886 765 7889999
Q ss_pred CHHHHHHHHHHhc----CCHHH-HHHHHHHcCCC-CHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 246 QDEEIQAILKIRL----MQTDG-LRVLTKIALDT-SLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 246 s~~eI~~IL~~Ra----i~dea-l~~La~~a~~G-d~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
+.++-.+|++..+ +.+++ ++.|++.. .| +.|+.-+++..|...|..++...|+.+++.+++...
T Consensus 187 d~~~R~~Il~~~~~~~~l~~~v~l~~la~~t-~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v 256 (476)
T 2ce7_A 187 DMLGRKKILEIHTRNKPLAEDVNLEIIAKRT-PGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRV 256 (476)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCHHHHHHTC-TTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcchhhHHHHHHhc-CCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHH
Confidence 9998888987544 44443 78888888 66 669999999999887765666789999999998743
No 54
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.08 E-value=6.3e-11 Score=132.28 Aligned_cols=203 Identities=19% Similarity=0.178 Sum_probs=117.8
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhc---cCccccccCCCccCC
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTAT---GREEEPDYDGWLADV 104 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~---gk~~a~~~d~~~~~~ 104 (448)
+|.+..+|.. ++.+|||++..+. +.+.+..++..+ +.++|||..|||+ ++..... |.+. ..+ ..
T Consensus 159 ~l~~~~r~~~-ld~viGr~~~i~~---l~~~l~~~~~~~--vlL~G~pG~GKT~la~~la~~l~~~~~p----~~l--~~ 226 (854)
T 1qvr_A 159 DLTRLAAEGK-LDPVIGRDEEIRR---VIQILLRRTKNN--PVLIGEPGVGKTAIVEGLAQRIVKGDVP----EGL--KG 226 (854)
T ss_dssp EHHHHHHTTC-SCCCCSCHHHHHH---HHHHHHCSSCCC--CEEEECTTSCHHHHHHHHHHHHHHTCSC----TTS--TT
T ss_pred hHHHHHhcCC-CcccCCcHHHHHH---HHHHHhcCCCCc--eEEEcCCCCCHHHHHHHHHHHHhcCCCc----hhh--cC
Confidence 3445567877 7999999987654 556666665556 6799999558876 4422111 1000 000 00
Q ss_pred CCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcC--CCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEe
Q psy1686 105 TKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAG--DTGEITPEVREQISAKVTEWREEGKAEIVPGVLFID 182 (448)
Q Consensus 105 ~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~--~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfID 182 (448)
..++. +|+ .++.+| ..++....++..+..+. ..+ .+.|||||
T Consensus 227 ~~~~~--------------------l~~--------~~l~~g~~~~g~~~~~l~~~~~~~~----~~~----~~~iL~ID 270 (854)
T 1qvr_A 227 KRIVS--------------------LQM--------GSLLAGAKYRGEFEERLKAVIQEVV----QSQ----GEVILFID 270 (854)
T ss_dssp CEEEE--------------------ECC-------------------CHHHHHHHHHHHHH----TTC----SSEEEEEC
T ss_pred CeEEE--------------------eeh--------HHhhccCccchHHHHHHHHHHHHHH----hcC----CCeEEEEe
Confidence 11222 111 111111 12233344554444331 111 25899999
Q ss_pred ccCCCC--------HHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCC--CCCChhhhhhcccccCCCCCHHHHHH
Q psy1686 183 EVHMLD--------IECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSP--HGIPIDLLDRMVIIPTQPYQDEEIQA 252 (448)
Q Consensus 183 EVH~L~--------~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~--~~Ip~~lLSR~~ii~~~pys~~eI~~ 252 (448)
|+|+|. .+.++.|.++++. +.+.+|++||..++ +.+.++|++||..+.+.+++.++..+
T Consensus 271 Ei~~l~~~~~~~g~~~~~~~L~~~l~~-----------~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~ 339 (854)
T 1qvr_A 271 ELHTVVGAGKAEGAVDAGNMLKPALAR-----------GELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETIS 339 (854)
T ss_dssp CC-------------------HHHHHT-----------TCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHH
T ss_pred cHHHHhccCCccchHHHHHHHHHHHhC-----------CCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHH
Confidence 999997 6778889999884 44556666654433 45789999999999999999999999
Q ss_pred HHHHhc----------CCHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHHh
Q psy1686 253 ILKIRL----------MQTDGLRVLTKIA-----LDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 253 IL~~Ra----------i~deal~~La~~a-----~~Gd~R~AL~lLe~a~~~a 290 (448)
||+... ++++++..+++++ ...-.+.|+.+++.|...+
T Consensus 340 iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~ 392 (854)
T 1qvr_A 340 ILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARL 392 (854)
T ss_dssp HHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHH
Confidence 986321 8999999999986 1224889999999887544
No 55
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.06 E-value=3.8e-10 Score=121.76 Aligned_cols=133 Identities=16% Similarity=0.244 Sum_probs=95.2
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeE----EEEecCceeEeeccccCCCC-------------CCChhhhhhc-
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVV----ITATNRGVTKIRGTAYSSPH-------------GIPIDLLDRM- 237 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~----IlaT~~~i~lI~~Ttenp~~-------------~Ip~~lLSR~- 237 (448)
.+|+||||+|+++.+.++.|+.++|+....+. ...-+....+|.+|+ |.+ .+|++|+|||
T Consensus 392 ~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatN--p~~G~~~~~~~~~~ni~l~~aLl~RFD 469 (595)
T 3f9v_A 392 GGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGN--PKFGRYISERPVSDNINLPPTILSRFD 469 (595)
T ss_dssp SSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEEC--CTTCCSCTTSCSCTTTCSCSSSGGGCS
T ss_pred CCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcC--CcCCccCcccCchhccCCCHHHHhhCe
Confidence 38999999999999999999999997431000 000011122333332 222 7999999999
Q ss_pred ccccCCCCCHHHHHHHHHH----------------------------h---cCCHHHHHHHHHH--------------cC
Q psy1686 238 VIIPTQPYQDEEIQAILKI----------------------------R---LMQTDGLRVLTKI--------------AL 272 (448)
Q Consensus 238 ~ii~~~pys~~eI~~IL~~----------------------------R---ai~deal~~La~~--------------a~ 272 (448)
+++.+.++...+-..|++. . .+++++.++|.++ +.
T Consensus 470 l~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~ 549 (595)
T 3f9v_A 470 LIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPI 549 (595)
T ss_dssp CCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCB
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccc
Confidence 6788888877652222221 0 1777888888888 33
Q ss_pred CCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 273 DTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 273 ~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
.+++|...+++..|...|..+++..|+.+||++++.++
T Consensus 550 ~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 550 LITPRQLEALIRISEAYAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp CSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 67999999999999888877788899999999999875
No 56
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.06 E-value=4.4e-09 Score=108.79 Aligned_cols=207 Identities=19% Similarity=0.194 Sum_probs=138.8
Q ss_pred ccccccccccchhhhhhhHHHHHHHhc-----------CC--CCCCCcccccCCCCCcch-hh-hhhhccCccccccCCC
Q psy1686 36 PRKVSQGMVGQLQARRAAGVVLGMIKE-----------EV--VMVWPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDGW 100 (448)
Q Consensus 36 p~~~~~~~VGQ~~~r~a~~~l~~mI~~-----------~k--i~gpf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~~ 100 (448)
|.-.++++.|.+++.++ |+++|.- |- -.| +.++|||.+|||. |+ |...+| +
T Consensus 143 p~v~~~dIgGl~~~k~~---l~e~v~~Pl~~pe~f~~~gi~~prG--vLL~GPPGTGKTllAkAiA~e~~--------~- 208 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKE---IKEVIELPVKHPELFESLGIAQPKG--VILYGPPGTGKTLLARAVAHHTD--------C- 208 (405)
T ss_dssp CSCCGGGSCSCHHHHHH---HHHHTHHHHHCHHHHHHHTCCCCCC--EEEESCSSSSHHHHHHHHHHHHT--------C-
T ss_pred CCCCHHHhCCHHHHHHH---HHHHHHHHHhCHHHHHhCCCCCCCc--eEEeCCCCCCHHHHHHHHHHhhC--------C-
Confidence 67779999999999877 4444432 11 125 7889999658875 55 333333 1
Q ss_pred ccCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEE
Q psy1686 101 LADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLF 180 (448)
Q Consensus 101 ~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLf 180 (448)
.|..+. .+.+.+.-.+|--..||+....+... .|.|+|
T Consensus 209 -----~f~~v~----------------------------~s~l~sk~vGese~~vr~lF~~Ar~~---------aP~IIF 246 (405)
T 4b4t_J 209 -----KFIRVS----------------------------GAELVQKYIGEGSRMVRELFVMAREH---------APSIIF 246 (405)
T ss_dssp -----EEEEEE----------------------------GGGGSCSSTTHHHHHHHHHHHHHHHT---------CSEEEE
T ss_pred -----CceEEE----------------------------hHHhhccccchHHHHHHHHHHHHHHh---------CCceEe
Confidence 343311 11122222233336677766655321 379999
Q ss_pred EeccCCCCH--------------HHHHHHHHhhhhcCC--C-eEEEEecCceeEeeccccCCCCCCChhhhh--hcc-cc
Q psy1686 181 IDEVHMLDI--------------ECFSFLNRALESEMS--P-VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-II 240 (448)
Q Consensus 181 IDEVH~L~~--------------~~f~~Llk~lEe~~~--p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-ii 240 (448)
|||++.+.. ..++.|+..++.... + ++|.|||+ |..+.++|+. |+- .|
T Consensus 247 iDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNr------------pd~LDpAllRpGRfD~~I 314 (405)
T 4b4t_J 247 MDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNR------------LDILDPALLRPGRIDRKI 314 (405)
T ss_dssp EESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESC------------SSSSCHHHHSTTSSCCEE
T ss_pred eecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCC------------hhhCCHhHcCCCcCceEE
Confidence 999999832 235666666664332 2 56667776 8889999996 774 88
Q ss_pred cCCCCCHHHHHHHHHHhc----CCHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 241 PTQPYQDEEIQAILKIRL----MQTD-GLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 241 ~~~pys~~eI~~IL~~Ra----i~de-al~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
.+.+-+.++-.+||+... ++++ -++.||+.+.+-+.++--++...|+..|..++...|+.+|+..++...
T Consensus 315 ~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v 389 (405)
T 4b4t_J 315 EFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKV 389 (405)
T ss_dssp ECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred EcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 888889988888887533 4433 378899998334888888889889888876777889999999988643
No 57
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.05 E-value=8.2e-10 Score=121.22 Aligned_cols=113 Identities=17% Similarity=0.236 Sum_probs=83.2
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC-----------C-CeEEEEecCceeEe-----eccccCCC--------CCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM-----------S-PVVITATNRGVTKI-----RGTAYSSP--------HGIP 230 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~-----------~-pi~IlaT~~~i~lI-----~~Ttenp~--------~~Ip 230 (448)
++|+|||||+.++.+.|+.|++.+|+.. . .+||++||.+...+ +.+++.+. ..++
T Consensus 558 ~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 637 (758)
T 1r6b_X 558 HAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFT 637 (758)
T ss_dssp SEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSC
T ss_pred CcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcC
Confidence 5899999999999999999999999753 1 24677777643111 11111000 1478
Q ss_pred hhhhhhc-ccccCCCCCHHHHHHHHHHhc---------------CCHHHHHHHHHHcCCC--CHHHHHHHHHHHHH
Q psy1686 231 IDLLDRM-VIIPTQPYQDEEIQAILKIRL---------------MQTDGLRVLTKIALDT--SLRYAIQLITTASV 288 (448)
Q Consensus 231 ~~lLSR~-~ii~~~pys~~eI~~IL~~Ra---------------i~deal~~La~~a~~G--d~R~AL~lLe~a~~ 288 (448)
++|++|| .++.|.||+.+++..|++..+ ++++++++|++.+..+ ++|...++++.+..
T Consensus 638 ~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 638 PEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred HHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 9999999 699999999999999887532 7999999999886444 58988888887654
No 58
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.04 E-value=1.1e-09 Score=115.95 Aligned_cols=119 Identities=15% Similarity=0.153 Sum_probs=89.1
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC-----------CCeEEEEecCceeEeeccccCC-CCCCChhhhhhcc-cccC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM-----------SPVVITATNRGVTKIRGTAYSS-PHGIPIDLLDRMV-IIPT 242 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~-----------~pi~IlaT~~~i~lI~~Ttenp-~~~Ip~~lLSR~~-ii~~ 242 (448)
++|+|||||++++...++.|+.++|+.. .+.+|+|||. -| .-..+.++++|+. .+.+
T Consensus 110 ~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~----------lpe~~~~~~aLldRF~~~i~v 179 (500)
T 3nbx_X 110 AEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNE----------LPEADSSLEALYDRMLIRLWL 179 (500)
T ss_dssp CSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESS----------CCCTTCTTHHHHTTCCEEEEC
T ss_pred ceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhcccc----------CCCccccHHHHHHHHHHHHHH
Confidence 5799999999999999999999998642 2244555553 11 1123459999985 4666
Q ss_pred CCCCH-HHHHHHHHHh---------------------------c--CCHHHHHHHHHHc---------CCCCHHHHHHHH
Q psy1686 243 QPYQD-EEIQAILKIR---------------------------L--MQTDGLRVLTKIA---------LDTSLRYAIQLI 283 (448)
Q Consensus 243 ~pys~-~eI~~IL~~R---------------------------a--i~deal~~La~~a---------~~Gd~R~AL~lL 283 (448)
.+.+. ++...|++.+ . ++++++++++++. ...+.|.++.++
T Consensus 180 ~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~ll 259 (500)
T 3nbx_X 180 DKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAI 259 (500)
T ss_dssp CSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHH
T ss_pred HHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHH
Confidence 77765 5666777532 1 8899999998875 234999999999
Q ss_pred HHHHHHhhhhCCCcccHHHHH
Q psy1686 284 TTASVVCRRRKATEICMEDIR 304 (448)
Q Consensus 284 e~a~~~a~~~~~~~It~e~V~ 304 (448)
..|...|.-+++..|+.+||+
T Consensus 260 r~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 260 RLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHTTCSBCCGGGGG
T ss_pred HHHHHHHhhcCCccccchHHH
Confidence 998888877788899999998
No 59
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.02 E-value=1.2e-09 Score=108.11 Aligned_cols=120 Identities=20% Similarity=0.222 Sum_probs=87.9
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhcC------------CCeEEEEecCceeEeeccccCCCCCCChhhhhhcc--cccC
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESEM------------SPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV--IIPT 242 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~~------------~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~--ii~~ 242 (448)
++|||||||.+..+.|..|++.+|+.. ...+|.+||.... ..-. .-...++|.+|+. .+.+
T Consensus 98 g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~---~~v~--~g~fr~~L~~Rl~~~~i~l 172 (304)
T 1ojl_A 98 GTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLA---EEVS--AGRFRQDLYYRLNVVAIEM 172 (304)
T ss_dssp SEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHH---HHHH--HTSSCHHHHHHHSSEEEEC
T ss_pred CEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHH---HHHH--hCCcHHHHHhhcCeeEEec
Confidence 789999999999999999999999753 1245556655210 0000 1124688999974 4679
Q ss_pred CCCC--HHHHHHHHHHh------------c-CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHH
Q psy1686 243 QPYQ--DEEIQAILKIR------------L-MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIR 304 (448)
Q Consensus 243 ~pys--~~eI~~IL~~R------------a-i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~ 304 (448)
.||. .+|+..+++.. . ++++++++|..++-.|++|...++++++...+. +..|+.+++.
T Consensus 173 PpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~~---~~~i~~~~l~ 246 (304)
T 1ojl_A 173 PSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLLT---GEYISERELP 246 (304)
T ss_dssp CCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHCC---SSSBCGGGSC
T ss_pred cCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCC---CCcccHHhhh
Confidence 9999 56776665521 0 899999999999878999999999999987652 3467776664
No 60
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.01 E-value=4.9e-10 Score=112.42 Aligned_cols=80 Identities=16% Similarity=0.133 Sum_probs=59.3
Q ss_pred CChhhhhhcc-cccCCCCCHHHHHHHHHH-------------h--c----CCHHHHHHHHHH--cCCCCHHHHHHHHHHH
Q psy1686 229 IPIDLLDRMV-IIPTQPYQDEEIQAILKI-------------R--L----MQTDGLRVLTKI--ALDTSLRYAIQLITTA 286 (448)
Q Consensus 229 Ip~~lLSR~~-ii~~~pys~~eI~~IL~~-------------R--a----i~deal~~La~~--a~~Gd~R~AL~lLe~a 286 (448)
++++|++|+- ++.|.|++.+++.+|+.. . . ++++++++|++. ..++++|..-++++++
T Consensus 239 ~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~ 318 (363)
T 3hws_A 239 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAA 318 (363)
T ss_dssp CCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHH
T ss_pred CCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHH
Confidence 6899999997 666999999999998873 1 1 899999999974 3477889999999988
Q ss_pred HHHhhhh---CC----CcccHHHHHHHHH
Q psy1686 287 SVVCRRR---KA----TEICMEDIRKVYA 308 (448)
Q Consensus 287 ~~~a~~~---~~----~~It~e~V~~~~~ 308 (448)
...+..+ .. -.||.++|++..+
T Consensus 319 ~~~~l~~~~~~~~~~~~~I~~~~v~~~~~ 347 (363)
T 3hws_A 319 LLDTMYDLPSMEDVEKVVIDESVIDGQSE 347 (363)
T ss_dssp HHHHHHSTTTCCCSEEEECHHHHTTCCSC
T ss_pred HHHHHHhcccccCCceeEEcHHHHhCcCC
Confidence 7543221 11 1477777766543
No 61
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.00 E-value=4.5e-09 Score=109.66 Aligned_cols=207 Identities=18% Similarity=0.167 Sum_probs=136.7
Q ss_pred CccccccccccchhhhhhhHHHHHHHhc-----------CC--CCCCCcccccCCCCCcch-hh-hhhhccCccccccCC
Q psy1686 35 EPRKVSQGMVGQLQARRAAGVVLGMIKE-----------EV--VMVWPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDG 99 (448)
Q Consensus 35 ~p~~~~~~~VGQ~~~r~a~~~l~~mI~~-----------~k--i~gpf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~ 99 (448)
.|...|+++.|.+++.+. |+++|.. |. ..| +.++|||.+|||. |+ |...+|
T Consensus 175 ~p~~t~~digGl~~~k~~---l~e~v~~pl~~pe~f~~~g~~~prG--vLLyGPPGTGKTllAkAiA~e~~--------- 240 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEE---LVEAIVLPMKRADKFKDMGIRAPKG--ALMYGPPGTGKTLLARACAAQTN--------- 240 (434)
T ss_dssp SCSCCGGGSCSCHHHHHH---HHHHTHHHHHCSHHHHHHCCCCCCE--EEEESCTTSSHHHHHHHHHHHHT---------
T ss_pred CCCCChHhcCcHHHHHHH---HHHHHHHHHhCHHHHHhCCCCCCCe--eEEECcCCCCHHHHHHHHHHHhC---------
Confidence 577779999999999876 4444321 11 124 7889999658875 55 333333
Q ss_pred CccCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEE
Q psy1686 100 WLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVL 179 (448)
Q Consensus 100 ~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VL 179 (448)
..|..+. .+.+.+.-.+|-...+|+....+... .|.|+
T Consensus 241 -----~~f~~v~----------------------------~s~l~~~~vGese~~ir~lF~~A~~~---------aP~Ii 278 (434)
T 4b4t_M 241 -----ATFLKLA----------------------------APQLVQMYIGEGAKLVRDAFALAKEK---------APTII 278 (434)
T ss_dssp -----CEEEEEE----------------------------GGGGCSSCSSHHHHHHHHHHHHHHHH---------CSEEE
T ss_pred -----CCEEEEe----------------------------hhhhhhcccchHHHHHHHHHHHHHhc---------CCeEE
Confidence 1333311 11122222233335667665554321 37999
Q ss_pred EEeccCCCC-----------H---HHHHHHHHhhhhcCC--C-eEEEEecCceeEeeccccCCCCCCChhhhh--hcc-c
Q psy1686 180 FIDEVHMLD-----------I---ECFSFLNRALESEMS--P-VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-I 239 (448)
Q Consensus 180 fIDEVH~L~-----------~---~~f~~Llk~lEe~~~--p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-i 239 (448)
||||++.+. . ..++.|+..++.... . +||.|||. |..+.++|+. |+- .
T Consensus 279 fiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNr------------p~~LD~AllRpGRfD~~ 346 (434)
T 4b4t_M 279 FIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNR------------VDVLDPALLRSGRLDRK 346 (434)
T ss_dssp EEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSS------------CCCCCTTTCSTTSEEEE
T ss_pred eecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCC------------chhcCHhHhcCCceeEE
Confidence 999999871 1 235667777765443 2 55566666 7889999988 774 7
Q ss_pred ccCCCCCHHHHHHHHHHhc----CCHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 240 IPTQPYQDEEIQAILKIRL----MQTDG-LRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 240 i~~~pys~~eI~~IL~~Ra----i~dea-l~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
|.+..-+.++-.+|++.-. .+++. ++.||+.+.+-+.++--++...|+..|..++...|+.+|+.+++..
T Consensus 347 I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~ 421 (434)
T 4b4t_M 347 IEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISE 421 (434)
T ss_dssp EECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHS
T ss_pred EEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 8888889988888887433 44443 7889999833388888888888888877677788999999988864
No 62
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.00 E-value=3.3e-09 Score=112.00 Aligned_cols=106 Identities=22% Similarity=0.247 Sum_probs=79.0
Q ss_pred CeEEEEeccCCCCH-----------HHHHHHHHhhhhcCCC---eEEEEecCceeEeeccccCCCCCCChhhhh--hcc-
Q psy1686 176 PGVLFIDEVHMLDI-----------ECFSFLNRALESEMSP---VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV- 238 (448)
Q Consensus 176 ~~VLfIDEVH~L~~-----------~~f~~Llk~lEe~~~p---i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~- 238 (448)
|++|||||||.|.. ..++.|++.++....+ ++|.+||. +..+++++++ |+.
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~------------~~~Ld~al~r~gRf~~ 365 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR------------PNSIDPALRRFGRFDR 365 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESC------------GGGBCGGGGSTTSSCE
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCC------------ccccCHHHhCCCcCce
Confidence 68999999988743 6788999999965432 44455554 5668899999 553
Q ss_pred cccCCCCCHHHHHHHHHHhc----C-CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhh
Q psy1686 239 IIPTQPYQDEEIQAILKIRL----M-QTDGLRVLTKIALDTSLRYAIQLITTASVVCRRR 293 (448)
Q Consensus 239 ii~~~pys~~eI~~IL~~Ra----i-~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~ 293 (448)
++.+.+++.++..+||+.++ + .+..+..+++.+.+-+.|+.-+++..|...|..+
T Consensus 366 ~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~ 425 (489)
T 3hu3_A 366 EVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425 (489)
T ss_dssp EEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999766 2 2334677888873447888878888888776543
No 63
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.00 E-value=8.3e-10 Score=121.49 Aligned_cols=200 Identities=15% Similarity=0.131 Sum_probs=126.2
Q ss_pred CCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCC
Q psy1686 27 GLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVT 105 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~ 105 (448)
+.+|.+..+|.. ++.+|||++..+. +.+++...+..+ +.++|||..|||+ ++..+.. +..
T Consensus 167 ~~~l~~~~~~~~-ld~iiG~~~~i~~---l~~~l~~~~~~~--vLL~G~pGtGKT~la~~la~~-------l~~------ 227 (758)
T 3pxi_A 167 ARDLTAIAKEDS-LDPVIGRSKEIQR---VIEVLSRRTKNN--PVLIGEPGVGKTAIAEGLAQQ-------IIN------ 227 (758)
T ss_dssp CCBHHHHTTSSC-SCCCCCCHHHHHH---HHHHHHCSSSCE--EEEESCTTTTTHHHHHHHHHH-------HHS------
T ss_pred HHHHHHHHhhCC-CCCccCchHHHHH---HHHHHhCCCCCC--eEEECCCCCCHHHHHHHHHHH-------Hhc------
Confidence 456666678887 7999999999765 566666666666 6799999558876 4422111 000
Q ss_pred CccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccC
Q psy1686 106 KDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVH 185 (448)
Q Consensus 106 ~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH 185 (448)
..+| .. .....+..+|+ .+ ...++....+++.+..+.. . .+.|||||
T Consensus 228 ~~~p--~~--------l~~~~~~~~~~-g~----------~~~G~~e~~l~~~~~~~~~----~-----~~~iLfiD--- 274 (758)
T 3pxi_A 228 NEVP--EI--------LRDKRVMTLDM-GT----------KYRGEFEDRLKKVMDEIRQ----A-----GNIILFID--- 274 (758)
T ss_dssp SCSC--TT--------TSSCCEECC---------------------CTTHHHHHHHHHT----C-----CCCEEEEC---
T ss_pred CCCC--hh--------hcCCeEEEecc-cc----------cccchHHHHHHHHHHHHHh----c-----CCEEEEEc---
Confidence 0011 00 00112223333 11 1134455677777665421 1 35899999
Q ss_pred CCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCC---CCCChhhhhhcccccCCCCCHHHHHHHHHHhc----
Q psy1686 186 MLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSP---HGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL---- 258 (448)
Q Consensus 186 ~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~---~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra---- 258 (448)
...+.++.|+++++ .+.+.+|++||.+++ +.+++++++||.++.+.+++.+++.+||+..+
T Consensus 275 -~~~~~~~~L~~~l~-----------~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~ 342 (758)
T 3pxi_A 275 -AAIDASNILKPSLA-----------RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYE 342 (758)
T ss_dssp -C--------CCCTT-----------SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSG
T ss_pred -CchhHHHHHHHHHh-----------cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 55678888999888 356777888877763 56899999999999999999999999998432
Q ss_pred ------CCHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHHh
Q psy1686 259 ------MQTDGLRVLTKIA-----LDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 259 ------i~deal~~La~~a-----~~Gd~R~AL~lLe~a~~~a 290 (448)
++++++..+++++ .....+.|+.+++.|...+
T Consensus 343 ~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~ 385 (758)
T 3pxi_A 343 AHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKV 385 (758)
T ss_dssp GGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHH
Confidence 8999999999885 1335689999999886544
No 64
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.99 E-value=4.2e-10 Score=125.64 Aligned_cols=114 Identities=20% Similarity=0.293 Sum_probs=86.0
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC------------CCeEEEEecCceeEeeccccCC--------------CCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM------------SPVVITATNRGVTKIRGTAYSS--------------PHGI 229 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~------------~pi~IlaT~~~i~lI~~Ttenp--------------~~~I 229 (448)
++|||||||+.++.+.|+.|++.+|+.. ..+||++||.+...+.....++ ...+
T Consensus 661 ~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f 740 (854)
T 1qvr_A 661 YSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHF 740 (854)
T ss_dssp SEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTS
T ss_pred CeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhC
Confidence 4899999999999999999999999763 1257777775321111100000 1235
Q ss_pred Chhhhhhc-ccccCCCCCHHHHHHHHHHhc---------------CCHHHHHHHHHHcC--CCCHHHHHHHHHHHHHH
Q psy1686 230 PIDLLDRM-VIIPTQPYQDEEIQAILKIRL---------------MQTDGLRVLTKIAL--DTSLRYAIQLITTASVV 289 (448)
Q Consensus 230 p~~lLSR~-~ii~~~pys~~eI~~IL~~Ra---------------i~deal~~La~~a~--~Gd~R~AL~lLe~a~~~ 289 (448)
.++|++|| .++.|.|++.+++..|++... ++++++++|++.+. .|++|..-++++.+...
T Consensus 741 ~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~ 818 (854)
T 1qvr_A 741 RPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELET 818 (854)
T ss_dssp CHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHH
T ss_pred CHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHH
Confidence 79999999 699999999999999887421 89999999999985 58999999998877543
No 65
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.99 E-value=3.5e-09 Score=103.92 Aligned_cols=191 Identities=19% Similarity=0.243 Sum_probs=115.2
Q ss_pred ccccccccccchhhhhhhHHHHHHHhc-----------CCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccC
Q psy1686 36 PRKVSQGMVGQLQARRAAGVVLGMIKE-----------EVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLAD 103 (448)
Q Consensus 36 p~~~~~~~VGQ~~~r~a~~~l~~mI~~-----------~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~ 103 (448)
|...+++++|++.+.+. |++++.. |.-++..+.++||+..|||+ ++...+ ..+
T Consensus 10 ~~~~~~di~G~~~~~~~---l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~-------~~~----- 74 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRE---LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN-------ECQ----- 74 (301)
T ss_dssp CCCCGGGSCSCHHHHHH---HHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH-------HTT-----
T ss_pred CCCCHHHhCCHHHHHHH---HHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH-------HhC-----
Confidence 55558999999999866 4555442 21222337899998558875 553311 111
Q ss_pred CCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEec
Q psy1686 104 VTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDE 183 (448)
Q Consensus 104 ~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDE 183 (448)
..|+.+.+. + +..-..|. -...++..+..+.. . .|+|+||||
T Consensus 75 -~~~i~v~~~---------------~----------l~~~~~g~---~~~~~~~~f~~a~~-----~----~p~il~iDE 116 (301)
T 3cf0_A 75 -ANFISIKGP---------------E----------LLTMWFGE---SEANVREIFDKARQ-----A----APCVLFFDE 116 (301)
T ss_dssp -CEEEEECHH---------------H----------HHHHHHTT---CTTHHHHHHHHHHH-----T----CSEEEEECS
T ss_pred -CCEEEEEhH---------------H----------HHhhhcCc---hHHHHHHHHHHHHh-----c----CCeEEEEEC
Confidence 133331111 1 10111122 12456665554421 1 369999999
Q ss_pred cCCCCHH--------------HHHHHHHhhhhcCC--C-eEEEEecCceeEeeccccCCCCCCChhhhh--hcc-cccCC
Q psy1686 184 VHMLDIE--------------CFSFLNRALESEMS--P-VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-IIPTQ 243 (448)
Q Consensus 184 VH~L~~~--------------~f~~Llk~lEe~~~--p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-ii~~~ 243 (448)
+|.|... .++.|++.++.... . +||.+||. +..+.+++++ |+. ++.+.
T Consensus 117 id~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~------------~~~ld~al~r~gRf~~~i~i~ 184 (301)
T 3cf0_A 117 LDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNR------------PDIIDPAILRPGRLDQLIYIP 184 (301)
T ss_dssp TTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESC------------GGGSCGGGGSTTSSCEEEECC
T ss_pred hHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCC------------ccccChHHhcCCccceEEecC
Confidence 9987543 36778888874322 2 34444443 5668899998 884 89999
Q ss_pred CCCHHHHHHHHHHhc----CC-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhh
Q psy1686 244 PYQDEEIQAILKIRL----MQ-TDGLRVLTKIALDTSLRYAIQLITTASVVCR 291 (448)
Q Consensus 244 pys~~eI~~IL~~Ra----i~-deal~~La~~a~~Gd~R~AL~lLe~a~~~a~ 291 (448)
+.+.++..+|++... +. +..++.|+..+.+-+.++--++++.|...|.
T Consensus 185 ~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~ 237 (301)
T 3cf0_A 185 LPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAI 237 (301)
T ss_dssp CCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999998654 22 2235677777633377787788888776653
No 66
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.98 E-value=1.2e-08 Score=106.64 Aligned_cols=207 Identities=17% Similarity=0.189 Sum_probs=136.3
Q ss_pred CccccccccccchhhhhhhHHHHHHHhc-----------CC--CCCCCcccccCCCCCcch-hh-hhhhccCccccccCC
Q psy1686 35 EPRKVSQGMVGQLQARRAAGVVLGMIKE-----------EV--VMVWPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDG 99 (448)
Q Consensus 35 ~p~~~~~~~VGQ~~~r~a~~~l~~mI~~-----------~k--i~gpf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~ 99 (448)
.|...++++.|.+.+.+. |+++|.- |- ..| +.++|||.+|||. |+ |...+| +
T Consensus 175 ~p~v~~~digGl~~~k~~---l~e~v~~pl~~p~~f~~~g~~~prG--vLL~GPPGtGKTllAkAiA~e~~--------~ 241 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRE---LREVIELPLKNPEIFQRVGIKPPKG--VLLYGPPGTGKTLLAKAVAATIG--------A 241 (437)
T ss_dssp SCSSCSGGGCSCHHHHHH---HHHHHHHHHHCHHHHHHHCCCCCCE--EEEESCTTSSHHHHHHHHHHHHT--------C
T ss_pred CCCCChhHhCChHHHHHH---HHHHHHHHHhCHHHHHhCCCCCCCe--EEEECCCCCcHHHHHHHHHHHhC--------C
Confidence 477779999999999876 4444432 11 125 7889999658875 55 333333 1
Q ss_pred CccCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEE
Q psy1686 100 WLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVL 179 (448)
Q Consensus 100 ~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VL 179 (448)
.|..+..+ .+.+.-.+|-...+|+....+.. ..|.|+
T Consensus 242 ------~~~~v~~s----------------------------~l~sk~~Gese~~ir~~F~~A~~---------~~P~Ii 278 (437)
T 4b4t_L 242 ------NFIFSPAS----------------------------GIVDKYIGESARIIREMFAYAKE---------HEPCII 278 (437)
T ss_dssp ------EEEEEEGG----------------------------GTCCSSSSHHHHHHHHHHHHHHH---------SCSEEE
T ss_pred ------CEEEEehh----------------------------hhccccchHHHHHHHHHHHHHHh---------cCCcee
Confidence 34332111 12222223323556665554421 147999
Q ss_pred EEeccCCCCH--------------HHHHHHHHhhhhcCC---CeEEEEecCceeEeeccccCCCCCCChhhhhh--c-cc
Q psy1686 180 FIDEVHMLDI--------------ECFSFLNRALESEMS---PVVITATNRGVTKIRGTAYSSPHGIPIDLLDR--M-VI 239 (448)
Q Consensus 180 fIDEVH~L~~--------------~~f~~Llk~lEe~~~---pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR--~-~i 239 (448)
||||++.+.. ..++.|+..++.... .+||+|||. |..+.++|+.| + ..
T Consensus 279 fiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNr------------p~~LDpAllRpGRfD~~ 346 (437)
T 4b4t_L 279 FMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNR------------PDTLDPALLRPGRLDRK 346 (437)
T ss_dssp EEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESS------------TTSSCTTTTSTTSEEEE
T ss_pred eeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCC------------chhhCHHHhCCCcccee
Confidence 9999998831 235667777765443 266777777 88899999876 3 27
Q ss_pred ccCCCCCHHHHHHHHHHhc----CCHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 240 IPTQPYQDEEIQAILKIRL----MQTD-GLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 240 i~~~pys~~eI~~IL~~Ra----i~de-al~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
|.+..-+.++-.+|++... .+++ -++.||+.+.+-+.++--++...|+..|..++...|+.+|+.+++..
T Consensus 347 I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 347 VEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp ECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred eecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 8888888888888887433 3322 27888998833388888888888888876677778999999988864
No 67
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.97 E-value=1.2e-08 Score=106.29 Aligned_cols=207 Identities=18% Similarity=0.176 Sum_probs=136.8
Q ss_pred CccccccccccchhhhhhhHHHHHHHhc-----------CC--CCCCCcccccCCCCCcch-hh-hhhhccCccccccCC
Q psy1686 35 EPRKVSQGMVGQLQARRAAGVVLGMIKE-----------EV--VMVWPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDG 99 (448)
Q Consensus 35 ~p~~~~~~~VGQ~~~r~a~~~l~~mI~~-----------~k--i~gpf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~ 99 (448)
.|...|+++.|.+++.++ |+++|.- |. -.| +.++|||.+|||. |+ |..++| +
T Consensus 176 ~p~v~~~DIgGld~~k~~---L~e~v~~Pl~~pe~f~~~Gi~~prG--vLLyGPPGTGKTlLAkAiA~e~~--------~ 242 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQE---IKESVELPLTHPELYEEMGIKPPKG--VILYGAPGTGKTLLAKAVANQTS--------A 242 (437)
T ss_dssp SCCCCGGGTCSCHHHHHH---HHHHHHHHHHCCHHHHHHTCCCCSE--EEEESSTTTTHHHHHHHHHHHHT--------C
T ss_pred CCCCcceecCcHHHHHHH---HHHHHHHHHhCHHHHHhCCCCCCCC--CceECCCCchHHHHHHHHHHHhC--------C
Confidence 477779999999999877 4444432 11 124 7889999658875 55 333333 1
Q ss_pred CccCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEE
Q psy1686 100 WLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVL 179 (448)
Q Consensus 100 ~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VL 179 (448)
.|..+- .+.+.+.-.+|--..+|+....+.. ..|.|+
T Consensus 243 ------~fi~v~----------------------------~s~l~sk~vGesek~ir~lF~~Ar~---------~aP~II 279 (437)
T 4b4t_I 243 ------TFLRIV----------------------------GSELIQKYLGDGPRLCRQIFKVAGE---------NAPSIV 279 (437)
T ss_dssp ------EEEEEE----------------------------SGGGCCSSSSHHHHHHHHHHHHHHH---------TCSEEE
T ss_pred ------CEEEEE----------------------------HHHhhhccCchHHHHHHHHHHHHHh---------cCCcEE
Confidence 343311 1112222223333556666655421 147999
Q ss_pred EEeccCCCCH--------------HHHHHHHHhhhhcCC--C-eEEEEecCceeEeeccccCCCCCCChhhhh--hcc-c
Q psy1686 180 FIDEVHMLDI--------------ECFSFLNRALESEMS--P-VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-I 239 (448)
Q Consensus 180 fIDEVH~L~~--------------~~f~~Llk~lEe~~~--p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-i 239 (448)
||||++.+.. ..++.|+..++.... . ++|+|||. +..+.++|+. |+- .
T Consensus 280 fiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNr------------pd~LDpALlRpGRfD~~ 347 (437)
T 4b4t_I 280 FIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNK------------IETLDPALIRPGRIDRK 347 (437)
T ss_dssp EEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESC------------STTCCTTSSCTTTEEEE
T ss_pred EEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCC------------hhhcCHHHhcCCceeEE
Confidence 9999998821 235556655554332 2 56666666 7889999996 774 7
Q ss_pred ccCCCCCHHHHHHHHHHhc----CCHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 240 IPTQPYQDEEIQAILKIRL----MQTDG-LRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 240 i~~~pys~~eI~~IL~~Ra----i~dea-l~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
|.+..-+.++-.+||+... +++++ ++.||+.+.+-+.++--++...|+..|..++...|+.+|+.+++..
T Consensus 348 I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 348 ILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp ECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred EEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 8888889988888987543 44443 7889999834488888889998988887677788999999988864
No 68
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.97 E-value=1.6e-08 Score=106.15 Aligned_cols=207 Identities=16% Similarity=0.156 Sum_probs=136.3
Q ss_pred CccccccccccchhhhhhhHHHHHHHhc-----------C--CCCCCCcccccCCCCCcch-hh-hhhhccCccccccCC
Q psy1686 35 EPRKVSQGMVGQLQARRAAGVVLGMIKE-----------E--VVMVWPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDG 99 (448)
Q Consensus 35 ~p~~~~~~~VGQ~~~r~a~~~l~~mI~~-----------~--ki~gpf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~ 99 (448)
+|.-.|+++.|.+++.+. |+++|.- | --.| +.++|||.+|||. |+ |..++| +
T Consensus 203 ~P~vt~~DIgGl~~~k~~---L~e~V~~pl~~pe~f~~~Gi~pprG--ILLyGPPGTGKTlLAkAiA~e~~--------~ 269 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEK---LREVVELPLLSPERFATLGIDPPKG--ILLYGPPGTGKTLCARAVANRTD--------A 269 (467)
T ss_dssp SCSCCCSSCTTCHHHHHH---HHHHTHHHHHCHHHHHHHTCCCCSE--EEECSCTTSSHHHHHHHHHHHHT--------C
T ss_pred CCCCCHHHhccHHHHHHH---HHHHHHHHhcCHHHHHHCCCCCCCc--eEeeCCCCCcHHHHHHHHHhccC--------C
Confidence 577779999999999876 4444431 2 1225 7789999658875 55 333333 1
Q ss_pred CccCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEE
Q psy1686 100 WLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVL 179 (448)
Q Consensus 100 ~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VL 179 (448)
.|..+.. +.+.+.-.+|--..+|+....+... .|.|+
T Consensus 270 ------~fi~vs~----------------------------s~L~sk~vGesek~ir~lF~~Ar~~---------aP~II 306 (467)
T 4b4t_H 270 ------TFIRVIG----------------------------SELVQKYVGEGARMVRELFEMARTK---------KACII 306 (467)
T ss_dssp ------EEEEEEG----------------------------GGGCCCSSSHHHHHHHHHHHHHHHT---------CSEEE
T ss_pred ------CeEEEEh----------------------------HHhhcccCCHHHHHHHHHHHHHHhc---------CCceE
Confidence 3333111 1112222223235677666655321 37999
Q ss_pred EEeccCCCCH--------------HHHHHHHHhhhhcCC--C-eEEEEecCceeEeeccccCCCCCCChhhhh--hcc-c
Q psy1686 180 FIDEVHMLDI--------------ECFSFLNRALESEMS--P-VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-I 239 (448)
Q Consensus 180 fIDEVH~L~~--------------~~f~~Llk~lEe~~~--p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-i 239 (448)
||||++.+.. ..++.|+..++.... + ++|.|||+ +..+.++|+. |+- .
T Consensus 307 fiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNr------------pd~LDpALlRpGRFD~~ 374 (467)
T 4b4t_H 307 FFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNR------------PNTLDPALLRPGRIDRK 374 (467)
T ss_dssp EEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSC------------TTSBCHHHHSTTTCCEE
T ss_pred eecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCC------------cccCChhhhccccccEE
Confidence 9999998831 234555555554332 2 55566666 7889999986 774 8
Q ss_pred ccCCCCCHHHHHHHHHHhc----CCHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 240 IPTQPYQDEEIQAILKIRL----MQTD-GLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 240 i~~~pys~~eI~~IL~~Ra----i~de-al~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
|.+..-+.++-.+||+... ++++ -++.||+.+.+-+.++--++...|+..|..++...|+.+|+.+++..
T Consensus 375 I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~k 449 (467)
T 4b4t_H 375 VEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 449 (467)
T ss_dssp ECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred EEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 8888889998888887543 4333 27789999833488888888888888876677788999999988864
No 69
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.92 E-value=5.5e-09 Score=104.57 Aligned_cols=124 Identities=15% Similarity=0.153 Sum_probs=90.1
Q ss_pred CeEEEEeccCCCC------HHHHHHHHHhhhhcC-----CCe-EEEEecCceeEeeccccCCCCCCC---hhhhhhcc-c
Q psy1686 176 PGVLFIDEVHMLD------IECFSFLNRALESEM-----SPV-VITATNRGVTKIRGTAYSSPHGIP---IDLLDRMV-I 239 (448)
Q Consensus 176 ~~VLfIDEVH~L~------~~~f~~Llk~lEe~~-----~pi-~IlaT~~~i~lI~~Ttenp~~~Ip---~~lLSR~~-i 239 (448)
+.|+||||+|.++ .+.++.|.+.+++.. .++ +|++|+.. .-...+. +.+.+|+. .
T Consensus 139 ~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~---------~~~~~l~~~~~~~~~~~~~~ 209 (412)
T 1w5s_A 139 YLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDV---------RALSYMREKIPQVESQIGFK 209 (412)
T ss_dssp EEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEET---------HHHHHHHHHCHHHHTTCSEE
T ss_pred eEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccc---------cHHHHHhhhcchhhhhcCCe
Confidence 5799999999985 377788888887654 343 33344320 0000111 33445532 4
Q ss_pred ccCCCCCHHHHHHHHHHhc--------CCHHHHHHHHHHcCC------CCHHHHHHHHHHHHHHhhhhCCCcccHHHHHH
Q psy1686 240 IPTQPYQDEEIQAILKIRL--------MQTDGLRVLTKIALD------TSLRYAIQLITTASVVCRRRKATEICMEDIRK 305 (448)
Q Consensus 240 i~~~pys~~eI~~IL~~Ra--------i~deal~~La~~a~~------Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~ 305 (448)
+.|.||+.+|+.+++..++ ++++++..|++.+ . |++|++++++..+...+..++...|+.+++..
T Consensus 210 i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~ 288 (412)
T 1w5s_A 210 LHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVY-GEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRK 288 (412)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHH-CGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH-HHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 8999999999999997553 7899999999999 7 99999999999987777655666899999987
Q ss_pred HHHH
Q psy1686 306 VYAL 309 (448)
Q Consensus 306 ~~~l 309 (448)
++..
T Consensus 289 ~~~~ 292 (412)
T 1w5s_A 289 AVSE 292 (412)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7753
No 70
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.92 E-value=3.8e-10 Score=99.43 Aligned_cols=176 Identities=18% Similarity=0.203 Sum_probs=96.8
Q ss_pred CCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hh-hhhhccCccccccCCCccCC
Q psy1686 27 GLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDGWLADV 104 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~~~~~~ 104 (448)
+.++.+.++|.. +++++|++...+. +.+.+..+.-.+ +.++|++..|||+ ++ +....... .+.
T Consensus 9 ~~~l~~~~~~~~-~~~~~g~~~~~~~---l~~~l~~~~~~~--~ll~G~~G~GKT~l~~~~~~~~~~~---~~~------ 73 (195)
T 1jbk_A 9 TIDLTERAEQGK-LDPVIGRDEEIRR---TIQVLQRRTKNN--PVLIGEPGVGKTAIVEGLAQRIING---EVP------ 73 (195)
T ss_dssp EEEHHHHHHTTC-SCCCCSCHHHHHH---HHHHHTSSSSCE--EEEECCTTSCHHHHHHHHHHHHHHT---CSC------
T ss_pred hHHHHHHHhhcc-ccccccchHHHHH---HHHHHhcCCCCc--eEEECCCCCCHHHHHHHHHHHHHhC---CCc------
Confidence 345666778887 7999999987654 566666654333 7899998558876 33 22111100 000
Q ss_pred CCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 105 TKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 105 ~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
..+ .| . -+..+++.++- .+. ....+..+.+..........+ .+.|+||||+
T Consensus 74 ~~~----~~----~--~~~~~~~~~~~-------------~~~--~~~~~~~~~~~~~~~~~~~~~----~~~vl~iDe~ 124 (195)
T 1jbk_A 74 EGL----KG----R--RVLALDMGALV-------------AGA--KYRGEFEERLKGVLNDLAKQE----GNVILFIDEL 124 (195)
T ss_dssp GGG----TT----C--EEEEECHHHHH-------------TTT--CSHHHHHHHHHHHHHHHHHST----TTEEEEEETG
T ss_pred hhh----cC----C--cEEEeeHHHHh-------------ccC--CccccHHHHHHHHHHHHhhcC----CCeEEEEeCH
Confidence 000 00 0 01112222211 110 011223333333332222222 2579999999
Q ss_pred CCCC--------HHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHH
Q psy1686 185 HMLD--------IECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAIL 254 (448)
Q Consensus 185 H~L~--------~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL 254 (448)
|++. .+.+++|+..++... ..+|++|+.. .....+.+++++++||..+.+.+++.++..+||
T Consensus 125 ~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~i~~~~~~-------~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 125 HTMVGAGKADGAMDAGNMLKPALARGE-LHCVGATTLD-------EYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp GGGTT------CCCCHHHHHHHHHTTS-CCEEEEECHH-------HHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHhccCcccchHHHHHHHHHhhccCC-eEEEEeCCHH-------HHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 9995 445888888887532 2333333320 000113578999999999999999999988775
No 71
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.90 E-value=3.3e-08 Score=93.66 Aligned_cols=123 Identities=19% Similarity=0.223 Sum_probs=85.7
Q ss_pred cCeEEEEeccCCCCH--------------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhc---
Q psy1686 175 VPGVLFIDEVHMLDI--------------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM--- 237 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~--------------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~--- 237 (448)
.+.++|+||+|.+.. ..++.|+..++..... ...++.++|.+ |..+++++++|+
T Consensus 108 ~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~--------~~~i~~a~t~~-p~~ld~~l~r~~rf~ 178 (254)
T 1ixz_A 108 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD--------TAIVVMAATNR-PDILDPALLRPGRFD 178 (254)
T ss_dssp SSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT--------CCEEEEEEESC-GGGSCGGGGSTTSSC
T ss_pred CCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC--------CCEEEEEccCC-chhCCHHHcCCCcCC
Confidence 368999999987731 2234444444432211 12233334434 455999999854
Q ss_pred ccccCCCCCHHHHHHHHHHhc----CCHHH-HHHHHHHcCCC-CHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHH
Q psy1686 238 VIIPTQPYQDEEIQAILKIRL----MQTDG-LRVLTKIALDT-SLRYAIQLITTASVVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 238 ~ii~~~pys~~eI~~IL~~Ra----i~dea-l~~La~~a~~G-d~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~ 307 (448)
..+.+.+.+.++..+|++..+ +++++ +.+|++.+ .| +.|+.-+++..|...|..++...|+.+++++++
T Consensus 179 ~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~-~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 179 RQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRT-PGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp EEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTC-TTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred eEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 378999999999999998544 55554 88899988 55 679999999999887765566789999998874
No 72
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.87 E-value=3.4e-08 Score=102.86 Aligned_cols=207 Identities=18% Similarity=0.191 Sum_probs=133.7
Q ss_pred CccccccccccchhhhhhhHHHHHHHhc-----------CC--CCCCCcccccCCCCCcch-hh-hhhhccCccccccCC
Q psy1686 35 EPRKVSQGMVGQLQARRAAGVVLGMIKE-----------EV--VMVWPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDG 99 (448)
Q Consensus 35 ~p~~~~~~~VGQ~~~r~a~~~l~~mI~~-----------~k--i~gpf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~ 99 (448)
.|...++++.|.+++.+. |++.|.. |. -.| +.++|||.+|||. |+ |...+| +
T Consensus 166 ~p~v~~~digGl~~~k~~---l~e~v~~pl~~p~~~~~~g~~~prG--iLL~GPPGtGKT~lakAiA~~~~--------~ 232 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQE---IREAVELPLVQADLYEQIGIDPPRG--VLLYGPPGTGKTMLVKAVANSTK--------A 232 (428)
T ss_dssp SCSCCGGGSCSCHHHHHH---HHHHHHHHHHCHHHHHHHCCCCCCE--EEEESCTTTTHHHHHHHHHHHHT--------C
T ss_pred CCCCCHHHhccHHHHHHH---HHHHHHHHHhCHHHHHhCCCCCCce--EEEECCCCCCHHHHHHHHHHHhC--------C
Confidence 477779999999999876 4444431 11 114 7889999658875 55 333333 1
Q ss_pred CccCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEE
Q psy1686 100 WLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVL 179 (448)
Q Consensus 100 ~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VL 179 (448)
.|..+.. +.+.+.-.+|-...||+....+... .|.|+
T Consensus 233 ------~~~~v~~----------------------------~~l~~~~~Ge~e~~ir~lF~~A~~~---------aP~Ii 269 (428)
T 4b4t_K 233 ------AFIRVNG----------------------------SEFVHKYLGEGPRMVRDVFRLAREN---------APSII 269 (428)
T ss_dssp ------EEEEEEG----------------------------GGTCCSSCSHHHHHHHHHHHHHHHT---------CSEEE
T ss_pred ------CeEEEec----------------------------chhhccccchhHHHHHHHHHHHHHc---------CCCee
Confidence 3433111 1112222233335677766554321 37999
Q ss_pred EEeccCCCC--------------HHHHHHHHHhhhhcCC--C-eEEEEecCceeEeeccccCCCCCCChhhhh--hcc-c
Q psy1686 180 FIDEVHMLD--------------IECFSFLNRALESEMS--P-VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-I 239 (448)
Q Consensus 180 fIDEVH~L~--------------~~~f~~Llk~lEe~~~--p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-i 239 (448)
||||++.+. ...++.|+..++.... . +||+|||. +..+.++|+. |+- .
T Consensus 270 fiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~------------~~~LD~AllRpGRfd~~ 337 (428)
T 4b4t_K 270 FIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNR------------ADTLDPALLRPGRLDRK 337 (428)
T ss_dssp EEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESC------------SSSCCHHHHSSSSEEEE
T ss_pred echhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCC------------hhhcChhhhcCCcceEE
Confidence 999998762 1246667777775433 2 56666666 7889999997 664 6
Q ss_pred ccCCCC-CHHHHHHHHHHhc----CCHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 240 IPTQPY-QDEEIQAILKIRL----MQTDG-LRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 240 i~~~py-s~~eI~~IL~~Ra----i~dea-l~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
|.|..+ +.++-..|++.-. +++++ ++.||+.+.+-+.++--++...|+..|..++...|+.+|+++++..
T Consensus 338 I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 338 IEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp EECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 778544 6666667776433 44443 7889999833488888888988988887677788999999998864
No 73
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.81 E-value=1.1e-07 Score=91.65 Aligned_cols=126 Identities=21% Similarity=0.209 Sum_probs=84.8
Q ss_pred cCeEEEEeccCCCC-----------HHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhc---ccc
Q psy1686 175 VPGVLFIDEVHMLD-----------IECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM---VII 240 (448)
Q Consensus 175 ~~~VLfIDEVH~L~-----------~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~---~ii 240 (448)
.+.++|+||||.+. .+....++..+.+-... ......++.+++.+ |..+++++++|+ ..+
T Consensus 132 ~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg-----~~~~~~i~~a~t~~-p~~ld~~l~r~~rf~~~i 205 (278)
T 1iy2_A 132 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF-----EKDTAIVVMAATNR-PDILDPALLRPGRFDRQI 205 (278)
T ss_dssp CSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTC-----CTTCCEEEEEEESC-TTSSCHHHHSTTSSCCEE
T ss_pred CCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCC-----CCCCCEEEEEecCC-chhCCHhHcCCCcCCeEE
Confidence 36899999998762 22233444443321110 01112233344444 455999999844 378
Q ss_pred cCCCCCHHHHHHHHHHhc----CCHHH-HHHHHHHcCCC-CHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHH
Q psy1686 241 PTQPYQDEEIQAILKIRL----MQTDG-LRVLTKIALDT-SLRYAIQLITTASVVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 241 ~~~pys~~eI~~IL~~Ra----i~dea-l~~La~~a~~G-d~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~ 307 (448)
.+.+++.++..+||+..+ +++++ +.+|+... .| +.|+.-++++.|...|..++...|+.+|+++++
T Consensus 206 ~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~-~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 206 AIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRT-PGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp ECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTC-TTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred EeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 999999999999998654 55554 88899888 66 558888999999887765566789999998874
No 74
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.80 E-value=4e-08 Score=102.73 Aligned_cols=133 Identities=14% Similarity=0.124 Sum_probs=91.9
Q ss_pred CeEEEEeccCCCCHH------------HHHHHHHhhhhcCC--CeEEEEecCceeEeecc---ccCCCCCCChhhhhhcc
Q psy1686 176 PGVLFIDEVHMLDIE------------CFSFLNRALESEMS--PVVITATNRGVTKIRGT---AYSSPHGIPIDLLDRMV 238 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~------------~f~~Llk~lEe~~~--pi~IlaT~~~i~lI~~T---tenp~~~Ip~~lLSR~~ 238 (448)
.+++|+||++-+... .|++|++.+|.... +. +--.+..+.+|.+. ..||.. +.++|++|+-
T Consensus 251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~-~~~d~~~ilfI~~gaf~~~~~~d-lipel~~R~~ 328 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKH-GMVKTDHILFIASGAFQVARPSD-LIPELQGRLP 328 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETT-EEEECTTCEEEEEECCSSCCGGG-SCHHHHTTCC
T ss_pred CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccccc-ceecCCcEEEEeccccccCChhh-cchHHhcccc
Confidence 379999999988542 78899999996321 11 11123344444332 235444 4578999997
Q ss_pred c-ccCCCCCHHHHHHHHHH--h-------c----------CCHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHH-h
Q psy1686 239 I-IPTQPYQDEEIQAILKI--R-------L----------MQTDGLRVLTKIA-------LDTSLRYAIQLITTASVV-C 290 (448)
Q Consensus 239 i-i~~~pys~~eI~~IL~~--R-------a----------i~deal~~La~~a-------~~Gd~R~AL~lLe~a~~~-a 290 (448)
+ +.|.+|+.+|+..|+.. + . ++++|+..|++.| .++++|..-+.++.+..- +
T Consensus 329 i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~ 408 (444)
T 1g41_A 329 IRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKIS 408 (444)
T ss_dssp EEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHH
T ss_pred eeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHH
Confidence 5 89999999999999941 1 1 9999999999974 357999999998876532 1
Q ss_pred hh----hC-CCcccHHHHHHHHHHh
Q psy1686 291 RR----RK-ATEICMEDIRKVYALF 310 (448)
Q Consensus 291 ~~----~~-~~~It~e~V~~~~~lf 310 (448)
.. .+ ...||.++|++.++-.
T Consensus 409 ~~~~~~~~~~~~i~~~~v~~~l~~~ 433 (444)
T 1g41_A 409 FSASDMNGQTVNIDAAYVADALGEV 433 (444)
T ss_dssp HHGGGCTTCEEEECHHHHHHHHTTT
T ss_pred hhccccCCCeEEEeHHHHHHhcCcc
Confidence 11 11 1358999998877643
No 75
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.79 E-value=1.2e-08 Score=108.16 Aligned_cols=126 Identities=18% Similarity=0.212 Sum_probs=87.5
Q ss_pred cCeEEEEeccCCCCH--------------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcc--
Q psy1686 175 VPGVLFIDEVHMLDI--------------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV-- 238 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~--------------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~-- 238 (448)
.|+++||||||.+.. ..++.|+..++..... ...++.++|.+ |..+.+++++|+.
T Consensus 123 ~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~--------~~viviAatn~-p~~LD~aLlr~gRfd 193 (499)
T 2dhr_A 123 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD--------TAIVVMAATNR-PDILDPALLRPGRFD 193 (499)
T ss_dssp SSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS--------CCCEEEECCSC-GGGSCTTTSSTTSSC
T ss_pred CCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC--------ccEEEEEecCC-hhhcCcccccccccc
Confidence 468999999998842 2334455555432211 11122222223 4448889998553
Q ss_pred -cccCCCCCHHHHHHHHHHhc----CCHHH-HHHHHHHcCCC-CHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 239 -IIPTQPYQDEEIQAILKIRL----MQTDG-LRVLTKIALDT-SLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 239 -ii~~~pys~~eI~~IL~~Ra----i~dea-l~~La~~a~~G-d~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
.+.+.+.+.++..+||+..+ +++++ +.+|++.. .| +.|+.-+++..|...|..++...|+.+|+++++...
T Consensus 194 r~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t-~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v 271 (499)
T 2dhr_A 194 RQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRT-PGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRV 271 (499)
T ss_dssp CEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTS-CSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHH
T ss_pred eEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Confidence 78899999999999998654 55554 78888888 66 559999999999887765566789999999998743
No 76
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.57 E-value=1.6e-08 Score=89.23 Aligned_cols=165 Identities=16% Similarity=0.181 Sum_probs=88.8
Q ss_pred CCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hh-hhhhccCccccccCCCccCC
Q psy1686 27 GLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDGWLADV 104 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~~~~~~ 104 (448)
+.+|.+.++|.. +++++|++...+. +.+.+..+.-.+ +.++||+..|||+ ++ +..... .
T Consensus 9 ~~~l~~~~~~~~-~~~~~g~~~~~~~---l~~~l~~~~~~~--vll~G~~G~GKT~la~~~~~~~~--------~----- 69 (187)
T 2p65_A 9 SRDLTALARAGK-LDPVIGRDTEIRR---AIQILSRRTKNN--PILLGDPGVGKTAIVEGLAIKIV--------Q----- 69 (187)
T ss_dssp EEEHHHHHHTTC-SCCCCSCHHHHHH---HHHHHTSSSSCE--EEEESCGGGCHHHHHHHHHHHHH--------T-----
T ss_pred HHHHHHHHhccc-cchhhcchHHHHH---HHHHHhCCCCCc--eEEECCCCCCHHHHHHHHHHHHH--------h-----
Confidence 445666778887 7999999987654 566666654434 7899998448875 33 211111 0
Q ss_pred CCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 105 TKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 105 ~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
... |... .. . -+..+++.++.. +. .......+.+..........+ .+.||||||+
T Consensus 70 -~~~--~~~~-~~-~-~~~~~~~~~~~~-------------~~--~~~~~~~~~~~~~~~~~~~~~----~~~vl~iDe~ 124 (187)
T 2p65_A 70 -GDV--PDSL-KG-R-KLVSLDLSSLIA-------------GA--KYRGDFEERLKSILKEVQDAE----GQVVMFIDEI 124 (187)
T ss_dssp -TCS--CTTT-TT-C-EEEEECHHHHHH-------------HC--CSHHHHHHHHHHHHHHHHHTT----TSEEEEETTG
T ss_pred -cCC--cchh-cC-C-eEEEEeHHHhhc-------------CC--CchhHHHHHHHHHHHHHHhcC----CceEEEEeCH
Confidence 000 0000 00 0 011122222111 00 000222223333322222222 2579999999
Q ss_pred CCCC---------HHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCC---CCCCChhhhhhcccccCCCCC
Q psy1686 185 HMLD---------IECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSS---PHGIPIDLLDRMVIIPTQPYQ 246 (448)
Q Consensus 185 H~L~---------~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp---~~~Ip~~lLSR~~ii~~~pys 246 (448)
|++. .+.+++|...+++ ..+.+|.+|+..+ ...+++++++||..+.+.+.+
T Consensus 125 ~~l~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~ii~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 125 HTVVGAGAVAEGALDAGNILKPMLAR-----------GELRCIGATTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp GGGSSSSSSCTTSCCTHHHHHHHHHT-----------TCSCEEEEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred HHhcccccccccchHHHHHHHHHHhc-----------CCeeEEEecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 9997 6778888888875 2233344443222 145789999999888877653
No 77
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.35 E-value=8.3e-08 Score=99.70 Aligned_cols=103 Identities=26% Similarity=0.485 Sum_probs=74.6
Q ss_pred cccccccccccCchhhHHHHHHHHhcchhhHHHhhhcccccc---ccccC----CCCCCChHHHHHHHHHHHHHHHhccc
Q psy1686 340 TKMEVDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFL---ALFAG----DTGEITPEVREQISAKVTEWREEGHS 412 (448)
Q Consensus 340 ~~lE~e~~v~lp~g~v~k~ke~v~~vTLhdlD~~na~~~g~~---~l~~~----~~~EI~~e~R~~i~~~v~~~i~~g~a 412 (448)
++.+...++++|++++++++++++.+++||+|.++++++|+. +++.+ ...+|..++|+++++.+++|.++|++
T Consensus 213 fd~~~~~~v~~p~~~~~~R~~il~~~~~~dl~~~a~~t~ggadl~~l~~~i~~p~~~~I~~~lr~~I~~~l~~~~~~g~~ 292 (456)
T 2c9o_A 213 FDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIA 292 (456)
T ss_dssp TSCSSSSEECCCCSCSEEEEEEEEEEEHHHHHHTC-----------------------------CHHHHHHHHHHHTTSE
T ss_pred cCcceeEecCCCchhHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHhccc
Confidence 444556789999999999999999999999999999998732 23333 46799999999999999999999999
Q ss_pred eeechhh------------hhhhhhhhhccCceeEEeccccc
Q psy1686 413 EKNRVKL------------TMFLRGLIEGTVTAKTLSSPNKL 442 (448)
Q Consensus 413 elv~~~~------------~~~l~~~~e~~~~~~~~~~~n~~ 442 (448)
+++|+|+ +.+|.+++|....|++|++||.+
T Consensus 293 ~v~~~VliIDEa~~l~~~a~~aLlk~lEe~~~~~~il~tn~~ 334 (456)
T 2c9o_A 293 ELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRG 334 (456)
T ss_dssp EEEECEEEEESGGGCBHHHHHHHHHHTTSTTCCEEEEEECCS
T ss_pred cccceEEEEechhhcCHHHHHHHHHHhhccCCCEEEEecCCc
Confidence 9999977 99999999999999888899875
No 78
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.33 E-value=5.5e-06 Score=87.45 Aligned_cols=130 Identities=15% Similarity=0.100 Sum_probs=94.5
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhc---------CCCeEEEEecCceeEeeccccCC-----CCCCChhhhhhc-ccc
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESE---------MSPVVITATNRGVTKIRGTAYSS-----PHGIPIDLLDRM-VII 240 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~---------~~pi~IlaT~~~i~lI~~Ttenp-----~~~Ip~~lLSR~-~ii 240 (448)
.+++||||+..++...+.+|+.++|+- +.+..++||..-+ . ++++ -+.+|.++|||+ +++
T Consensus 301 gGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~---~--~yd~~~s~~~~~Lp~alLDRFDLi~ 375 (506)
T 3f8t_A 301 GGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPG---E--QWPSDPPIARIDLDQDFLSHFDLIA 375 (506)
T ss_dssp TSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCC---C----CCSCGGGGCCSCHHHHTTCSEEE
T ss_pred CCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcc---c--ccCCCCCccccCCChHHhhheeeEE
Confidence 489999999999999999999999974 3343333333311 1 1110 137999999999 555
Q ss_pred cCCC--------------CCHHHHHHHHHH-h---c---CCHHHHHHHHHH-----------------cCCCCHHHHHHH
Q psy1686 241 PTQP--------------YQDEEIQAILKI-R---L---MQTDGLRVLTKI-----------------ALDTSLRYAIQL 282 (448)
Q Consensus 241 ~~~p--------------ys~~eI~~IL~~-R---a---i~deal~~La~~-----------------a~~Gd~R~AL~l 282 (448)
.+.. ++.+++++.+.+ | + +++++.++|.++ +..-++|..+.+
T Consensus 376 i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaL 455 (506)
T 3f8t_A 376 FLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESV 455 (506)
T ss_dssp ETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHH
T ss_pred EecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHH
Confidence 4433 455666665542 3 1 999999888865 112388999999
Q ss_pred HHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 283 ITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 283 Le~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
+..|...|.-+++..|+.+||+.+..++
T Consensus 456 iRlA~A~A~L~gR~~V~~eDV~~Ai~L~ 483 (506)
T 3f8t_A 456 ERLAKAHARMRLSDDVEPEDVDIAAELV 483 (506)
T ss_dssp HHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 9999888887888999999999999876
No 79
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.24 E-value=6e-07 Score=91.14 Aligned_cols=112 Identities=24% Similarity=0.334 Sum_probs=83.2
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCC-C----eEEEEecCceeEeeccccCCCC-----CCChhhhhhccc--ccCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMS-P----VVITATNRGVTKIRGTAYSSPH-----GIPIDLLDRMVI--IPTQ 243 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~-p----i~IlaT~~~i~lI~~Ttenp~~-----~Ip~~lLSR~~i--i~~~ 243 (448)
.+.|||||||.|+.+.|..|++.+|+... + .-+ .-.+-+|.+|+.++.. ....+|..|+.+ +.+.
T Consensus 223 ~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~---~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lP 299 (368)
T 3dzd_A 223 QGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKI---EVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLP 299 (368)
T ss_dssp TSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBE---ECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECC
T ss_pred CCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcce---eeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCC
Confidence 37899999999999999999999997421 0 000 0122355555555433 245689999875 5599
Q ss_pred CCCH--HHHHHHHHH---hc----------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy1686 244 PYQD--EEIQAILKI---RL----------MQTDGLRVLTKIALDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 244 pys~--~eI~~IL~~---Ra----------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a 290 (448)
|+.+ +||..++.. +. ++++|+++|..+.--|+.|...|.++++...+
T Consensus 300 pLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 300 PLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp CGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTC
T ss_pred ChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 9988 788665542 11 99999999999988899999999999997765
No 80
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.19 E-value=2.1e-06 Score=75.05 Aligned_cols=60 Identities=12% Similarity=0.166 Sum_probs=41.6
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC--CCeEEEEecCceeEeeccccCCCCC---CChhhhhhcc--cccCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM--SPVVITATNRGVTKIRGTAYSSPHG---IPIDLLDRMV--IIPTQPY 245 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~--~pi~IlaT~~~i~lI~~Ttenp~~~---Ip~~lLSR~~--ii~~~py 245 (448)
.+++||||||+++.+.|+.|++.+++.. ...+|.+||. ++... +..+|..|+. .+.+.|+
T Consensus 76 ~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~----------~~~~~~~~~~~~L~~rl~~~~i~lPpL 142 (143)
T 3co5_A 76 GGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY----------AAGSDGISCEEKLAGLFSESVVRIPPL 142 (143)
T ss_dssp TSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE----------CTTTC--CHHHHHHHHSSSEEEEECCC
T ss_pred CCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC----------CHHHHHhCccHHHHHHhcCcEEeCCCC
Confidence 3789999999999999999999999853 2345555554 22111 4567788853 4555554
No 81
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.15 E-value=1.9e-07 Score=103.97 Aligned_cols=194 Identities=19% Similarity=0.194 Sum_probs=111.1
Q ss_pred ccccccccccchhhhhhhHHHHHHHhcC-----------CCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccC
Q psy1686 36 PRKVSQGMVGQLQARRAAGVVLGMIKEE-----------VVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLAD 103 (448)
Q Consensus 36 p~~~~~~~VGQ~~~r~a~~~l~~mI~~~-----------ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~ 103 (448)
|...+++++|++++++. |.+++... .-++..+.++|||..|||+ ++..+. ..+
T Consensus 472 ~~v~~~di~gl~~vk~~---l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~-------~~~----- 536 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRE---LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN-------ECQ----- 536 (806)
T ss_dssp CCCSSCSSSCCCCHHHH---HHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHH-------HHT-----
T ss_pred ccccccccccchhhhhh---HHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHH-------HhC-----
Confidence 44458999999999755 45554421 1122447799999558876 553321 111
Q ss_pred CCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEec
Q psy1686 104 VTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDE 183 (448)
Q Consensus 104 ~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDE 183 (448)
..|+.+..+++. +.-.++-...+|.....+... .|.|+||||
T Consensus 537 -~~~i~v~~~~l~----------------------------~~~~g~~~~~i~~~f~~a~~~---------~p~vl~iDE 578 (806)
T 1ypw_A 537 -ANFISIKGPELL----------------------------TMWFGESEANVREIFDKARQA---------APCVLFFDE 578 (806)
T ss_dssp -CCCCCCCCSSST----------------------------TCCTTTSSHHHHHHHHHHHHH---------CSBCCCCSS
T ss_pred -CCEEEEechHhh----------------------------hhhcCccHHHHHHHHHHHHhc---------CCeEEEEEC
Confidence 134443222221 111122335666666554211 368999999
Q ss_pred cCCCC--------------HHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhh--hcc-cccCCCCC
Q psy1686 184 VHMLD--------------IECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-IIPTQPYQ 246 (448)
Q Consensus 184 VH~L~--------------~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-ii~~~pys 246 (448)
||.|. ...++.|+..++.... ...+.+|++| |.+..+++++++ ||. ++.+.+++
T Consensus 579 id~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~-------~~~v~vI~tT--N~~~~ld~allrpgRf~~~i~~~~p~ 649 (806)
T 1ypw_A 579 LDSIAKARGGNIGDGGGAADRVINQILTEMDGMST-------KKNVFIIGAT--NRPDIIDPAILRPGRLDQLIYIPLPD 649 (806)
T ss_dssp HHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-------------CCBCCCCC--BSCGGGSCTTSSGGGTTSCCCCCCCC
T ss_pred hhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccc-------cCCeEEEEec--CCcccCCHHHhCccccCceeecCCCC
Confidence 99873 2345667777664321 1222333333 337779999999 996 99999999
Q ss_pred HHHHHHHHHHhc----C-CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhh
Q psy1686 247 DEEIQAILKIRL----M-QTDGLRVLTKIALDTSLRYAIQLITTASVVCR 291 (448)
Q Consensus 247 ~~eI~~IL~~Ra----i-~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~ 291 (448)
.++..+|++... + .+..++.|++.+.+-+.+..-+++..|...|.
T Consensus 650 ~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~ 699 (806)
T 1ypw_A 650 EKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAI 699 (806)
T ss_dssp CSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHH
Confidence 999999998544 1 11224455555523366666667777766654
No 82
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.14 E-value=2e-05 Score=77.07 Aligned_cols=107 Identities=13% Similarity=0.088 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCH-------------HHHHHHHHhhhhcC--------------CC
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDI-------------ECFSFLNRALESEM--------------SP 205 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~-------------~~f~~Llk~lEe~~--------------~p 205 (448)
..+|+....+.. +.... .+.||||||||.+.. ..++.|+..++... ..
T Consensus 82 ~~i~~~f~~a~~-~~~~~----~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v 156 (293)
T 3t15_A 82 KLIRQRYREAAE-IIRKG----NMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARV 156 (293)
T ss_dssp HHHHHHHHHHHH-HHTTS----SCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCC
T ss_pred HHHHHHHHHHHH-HHhcC----CCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCc
Confidence 556665555431 11222 469999999988754 35688888886321 12
Q ss_pred eEEEEecCceeEeeccccCCCCCCChhhhh--hcccccCCCCCHHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHH
Q psy1686 206 VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMVIIPTQPYQDEEIQAILKIRL----MQTDGLRVLTKIALDTSLR 277 (448)
Q Consensus 206 i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~ii~~~pys~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R 277 (448)
.||++||. +..++++++. |+-.+-+.| +.++..+|++... ++.+.+..++.--.+.++.
T Consensus 157 ~vI~ttN~------------~~~ld~al~R~~R~d~~i~~P-~~~~r~~Il~~~~~~~~~~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 157 PIIVTGND------------FSTLYAPLIRDGRMEKFYWAP-TREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp CEEEECSS------------CCC--CHHHHHHHEEEEEECC-CHHHHHHHHHHHHGGGCCCHHHHHHHHHHSCSCCHH
T ss_pred EEEEecCC------------cccCCHHHhCCCCCceeEeCc-CHHHHHHHHHHhccCCCCCHHHHHHHhCCCCcccHH
Confidence 44444444 6779999984 765322356 9999999987432 6666665555443244443
No 83
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.10 E-value=7.2e-06 Score=71.62 Aligned_cols=64 Identities=20% Similarity=0.188 Sum_probs=41.9
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcc--cccCCCC
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV--IIPTQPY 245 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~--ii~~~py 245 (448)
++|||||||+|+.+.|+.|++.++..... .+|.+||.... ..-. ...+..+|..|+. .+.+.|+
T Consensus 78 g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~---~~~~--~~~~~~~L~~rl~~~~i~lPpL 144 (145)
T 3n70_A 78 GTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLV---ELAA--SNHIIAELYYCFAMTQIACLPL 144 (145)
T ss_dssp SCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSCHH---HHHH--HSCCCHHHHHHHHHHEEECCCC
T ss_pred cEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcCHH---HHHH--cCCCCHHHHHHhcCCEEeCCCC
Confidence 78999999999999999999999765443 55666664210 0000 1124577778753 4556665
No 84
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.06 E-value=1.5e-05 Score=88.95 Aligned_cols=190 Identities=16% Similarity=0.161 Sum_probs=114.2
Q ss_pred ccccccccccchhhhhhhHHHHHHHhc----C----CCC-CCC--cccccCCCCCcch-hhhhhhccCccccccCCCccC
Q psy1686 36 PRKVSQGMVGQLQARRAAGVVLGMIKE----E----VVM-VWP--CVMCGRGKNPQKV-KKISTATGREEEPDYDGWLAD 103 (448)
Q Consensus 36 p~~~~~~~VGQ~~~r~a~~~l~~mI~~----~----ki~-gpf--~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~ 103 (448)
|.-.++++.|.+++.+. |+++|.- - ++. .|+ +.++|||.+|||+ ++-. |++.++
T Consensus 199 ~~v~~~dIgGl~~~~~~---l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LArai-------A~elg~---- 264 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQ---IKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAV-------ANETGA---- 264 (806)
T ss_dssp SSCCGGGCCSCCTTHHH---HHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHH-------HTTTTC----
T ss_pred CCCChhhhcCHHHHHHH---HHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHH-------HHHhCC----
Confidence 55568999999998766 4555432 1 111 022 6789999558875 5522 222221
Q ss_pred CCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEec
Q psy1686 104 VTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDE 183 (448)
Q Consensus 104 ~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDE 183 (448)
.|+. |+-.+ +.+.-.+|--..+|+....+. .. .|.|+||||
T Consensus 265 --~~~~---------------v~~~~-------------l~sk~~gese~~lr~lF~~A~------~~---~PsIIfIDE 305 (806)
T 3cf2_A 265 --FFFL---------------INGPE-------------IMSKLAGESESNLRKAFEEAE------KN---APAIIFIDE 305 (806)
T ss_dssp --EEEE---------------EEHHH-------------HHSSCTTHHHHHHHHHHHHHT------TS---CSEEEEEES
T ss_pred --eEEE---------------EEhHH-------------hhcccchHHHHHHHHHHHHHH------Hc---CCeEEEEeh
Confidence 3332 11111 112222233356666665542 11 479999999
Q ss_pred cCCCCH-----------HHHHHHHHhhhhcCC--C-eEEEEecCceeEeeccccCCCCCCChhhhh--hcc-cccCCCCC
Q psy1686 184 VHMLDI-----------ECFSFLNRALESEMS--P-VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-IIPTQPYQ 246 (448)
Q Consensus 184 VH~L~~-----------~~f~~Llk~lEe~~~--p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-ii~~~pys 246 (448)
++.|.. ...+.|+..++.... + ++|.+||+ +..++++|+. |+- .|.+...+
T Consensus 306 iDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~------------~d~LD~ALrR~GRFd~~I~i~~Pd 373 (806)
T 3cf2_A 306 LDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR------------PNSIDPALRRFGRFDREVDIGIPD 373 (806)
T ss_dssp GGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSS------------TTTSCTTTTSTTSSCEEEECCCCC
T ss_pred hcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCC------------hhhcCHHHhCCcccceEEecCCCC
Confidence 999942 345556666655322 2 33444444 7779999988 774 78899999
Q ss_pred HHHHHHHHHHhc----CC-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy1686 247 DEEIQAILKIRL----MQ-TDGLRVLTKIALDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 247 ~~eI~~IL~~Ra----i~-deal~~La~~a~~Gd~R~AL~lLe~a~~~a 290 (448)
.++=.+||+... .+ +--++.||+.+.+-+..+--++...|...|
T Consensus 374 ~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A 422 (806)
T 3cf2_A 374 ATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQA 422 (806)
T ss_dssp HHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 998889988543 22 223778888874447777777777776655
No 85
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.98 E-value=8.4e-05 Score=82.77 Aligned_cols=102 Identities=22% Similarity=0.228 Sum_probs=66.0
Q ss_pred CeEEEEeccCCCCH-----------HHHHHHHHhhhhcCC---CeEEEEecCceeEeeccccCCCCCCChhhhh--hc-c
Q psy1686 176 PGVLFIDEVHMLDI-----------ECFSFLNRALESEMS---PVVITATNRGVTKIRGTAYSSPHGIPIDLLD--RM-V 238 (448)
Q Consensus 176 ~~VLfIDEVH~L~~-----------~~f~~Llk~lEe~~~---pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~-~ 238 (448)
+.++||||+|.+.. ..++.|+..++.... ..+|.+||. +..+.+++.. |+ .
T Consensus 298 p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~------------~~~ld~al~r~gRf~~ 365 (806)
T 1ypw_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR------------PNSIDPALRRFGRFDR 365 (806)
T ss_dssp SEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSC------------TTTSCTTTTSTTSSCE
T ss_pred CcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCC------------chhcCHHHhccccccc
Confidence 68999999998842 355667777765432 244455554 5668787776 77 3
Q ss_pred cccCCCCCHHHHHHHHHHhc-----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy1686 239 IIPTQPYQDEEIQAILKIRL-----MQTDGLRVLTKIALDTSLRYAIQLITTASVV 289 (448)
Q Consensus 239 ii~~~pys~~eI~~IL~~Ra-----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~ 289 (448)
.+.+..++.++-.+|++..+ .++..+..++....+-..+..-.+...+...
T Consensus 366 ~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~ 421 (806)
T 1ypw_A 366 EVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQ 421 (806)
T ss_dssp EECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHH
Confidence 68889999999999998544 3333466677776233555555554544443
No 86
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.72 E-value=4.3e-05 Score=85.23 Aligned_cols=189 Identities=21% Similarity=0.230 Sum_probs=97.5
Q ss_pred ccccccccccchhhhhhhHHHHHHHhcC--------C--CC-CCCcccccCCCCCcch-hhhhhhccCccccccCCCccC
Q psy1686 36 PRKVSQGMVGQLQARRAAGVVLGMIKEE--------V--VM-VWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLAD 103 (448)
Q Consensus 36 p~~~~~~~VGQ~~~r~a~~~l~~mI~~~--------k--i~-gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~ 103 (448)
|...++++.|.+++.++ |.++|.-- + +. ..=+.++|||.+|||. |+.. |.+.+
T Consensus 472 p~v~w~diggl~~~k~~---l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkai-------A~e~~----- 536 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRE---LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI-------ANECQ----- 536 (806)
T ss_dssp CCCCSTTCCSCHHHHHH---HTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHH-------HHTTT-----
T ss_pred CCCCHHHhCCHHHHHHH---HHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHH-------HHHhC-----
Confidence 66668999999998765 44544321 0 10 0127789999558875 5522 22222
Q ss_pred CCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEec
Q psy1686 104 VTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDE 183 (448)
Q Consensus 104 ~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDE 183 (448)
..|+.+- .+.+++.-.+|=-..||+....+.. ..|.|+||||
T Consensus 537 -~~f~~v~----------------------------~~~l~s~~vGese~~vr~lF~~Ar~---------~~P~IifiDE 578 (806)
T 3cf2_A 537 -ANFISIK----------------------------GPELLTMWFGESEANVREIFDKARQ---------AAPCVLFFDE 578 (806)
T ss_dssp -CEEEECC----------------------------HHHHHTTTCSSCHHHHHHHHHHHHT---------TCSEEEECSC
T ss_pred -CceEEec----------------------------cchhhccccchHHHHHHHHHHHHHH---------cCCceeechh
Confidence 2444410 1223333334444678877766521 1479999999
Q ss_pred cCCCCH--------------HHHHHHHHhhhhcCC--CeE-EEEecCceeEeeccccCCCCCCChhhhh--hcc-cccCC
Q psy1686 184 VHMLDI--------------ECFSFLNRALESEMS--PVV-ITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-IIPTQ 243 (448)
Q Consensus 184 VH~L~~--------------~~f~~Llk~lEe~~~--pi~-IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-ii~~~ 243 (448)
|+.|.. ...+-|+.-++.... ++| |.|||+ |..|.+++|- |+- +|++.
T Consensus 579 iDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~------------p~~lD~AllRpgRfd~~i~v~ 646 (806)
T 3cf2_A 579 LDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNR------------PDIIDPAILRPGRLDQLIYIP 646 (806)
T ss_dssp GGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CC------------SSSSCHHHHSTTTSCCEEEC-
T ss_pred hhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCC------------chhCCHhHcCCCcceEEEEEC
Confidence 999832 135667777775432 233 334444 6789999997 774 67777
Q ss_pred CCCHHHHHHHHHHhc----CCHH-HHHHHHHHcCCC-CHHHHHHHHHHHHHHh
Q psy1686 244 PYQDEEIQAILKIRL----MQTD-GLRVLTKIALDT-SLRYAIQLITTASVVC 290 (448)
Q Consensus 244 pys~~eI~~IL~~Ra----i~de-al~~La~~a~~G-d~R~AL~lLe~a~~~a 290 (448)
.-+.++-.+|++... ++++ -++.||+.+ +| +..+--++...|...|
T Consensus 647 lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t-~g~SGadi~~l~~~A~~~a 698 (806)
T 3cf2_A 647 LPDEKSRVAILKANLRKSPVAKDVDLEFLAKMT-NGFSGADLTEICQRACKLA 698 (806)
T ss_dssp ----CHHHHTTTTTSSCC--CCC-----------------CHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHHHH
Confidence 777777778876322 3322 367777776 43 5555455555665554
No 87
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=97.69 E-value=0.00011 Score=74.83 Aligned_cols=122 Identities=22% Similarity=0.286 Sum_probs=87.7
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC------------CCeEEEEecCceeEeeccccCCCCCCChhhhhhcc--ccc
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM------------SPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV--IIP 241 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~------------~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~--ii~ 241 (448)
.|.||||||+.|+.+.|..|++.+|+.. ...+|.|||....-.- . ....-.+|..|.. .+.
T Consensus 232 ~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~---~--~g~fr~dl~~rl~~~~i~ 306 (387)
T 1ny5_A 232 GGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELV---K--EGKFREDLYYRLGVIEIE 306 (387)
T ss_dssp TSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHH---H--TTSSCHHHHHHHTTEEEE
T ss_pred CcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHH---H--cCCccHHHHHhhcCCeec
Confidence 3899999999999999999999999742 1135555554221000 0 1223578888874 567
Q ss_pred CCCCCH--HHHHHHHHH-------hc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHH
Q psy1686 242 TQPYQD--EEIQAILKI-------RL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRK 305 (448)
Q Consensus 242 ~~pys~--~eI~~IL~~-------Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~ 305 (448)
+.|+.. +||..+... +. +++++++.|..+.--|+.|..-|.+++|+..+. +..|+.+++..
T Consensus 307 lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~~---~~~i~~~~l~~ 382 (387)
T 1ny5_A 307 IPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSE---GKFIDRGELSC 382 (387)
T ss_dssp CCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCC---SSEECHHHHHH
T ss_pred CCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCC---CCcCcHHHCcH
Confidence 788875 677555442 11 899999999999889999999999999987762 34798888753
No 88
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.45 E-value=0.0001 Score=72.82 Aligned_cols=86 Identities=56% Similarity=0.796 Sum_probs=61.7
Q ss_pred HHHHhcchhhHHHhhhccccccccccCCCCCCChHHHHHHHHHHHHHHHhccceeechhh------------hhhhhhhh
Q psy1686 360 TVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGHSEKNRVKL------------TMFLRGLI 427 (448)
Q Consensus 360 e~v~~vTLhdlD~~na~~~g~~~l~~~~~~EI~~e~R~~i~~~v~~~i~~g~aelv~~~~------------~~~l~~~~ 427 (448)
+..+.+++|++|+.|+++.++..++.|..+++.+++|+.+++....|...|++...|+++ +..|++++
T Consensus 134 ~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~~~~~~L~~~l 213 (368)
T 3uk6_A 134 GAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRAL 213 (368)
T ss_dssp ----CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBHHHHHHHHHHT
T ss_pred hccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccChHHHHHHHHHh
Confidence 557789999999999999998888888889999999999999999999999998777766 77889999
Q ss_pred hccCceeEEecccccccc
Q psy1686 428 EGTVTAKTLSSPNKLLKM 445 (448)
Q Consensus 428 e~~~~~~~~~~~n~~~~~ 445 (448)
|....|++++++|+++..
T Consensus 214 e~~~~~~~ii~t~~~~~~ 231 (368)
T 3uk6_A 214 ESDMAPVLIMATNRGITR 231 (368)
T ss_dssp TCTTCCEEEEEESCSEEE
T ss_pred hCcCCCeeeeecccceee
Confidence 999999999999976543
No 89
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.23 E-value=0.0037 Score=60.51 Aligned_cols=126 Identities=19% Similarity=0.186 Sum_probs=72.7
Q ss_pred cCeEEEEeccCCCCH-----------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhh--hcc-cc
Q psy1686 175 VPGVLFIDEVHMLDI-----------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-II 240 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~-----------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-ii 240 (448)
.|.++|+||++.+.. ...+.++..+..... ....++.++|.+ |.-+.++++. |+- .|
T Consensus 103 ~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~--------~~~~i~ia~tn~-p~~LD~al~r~gRfd~~i 173 (274)
T 2x8a_A 103 APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEA--------RQQVFIMAATNR-PDIIDPAILRPGRLDKTL 173 (274)
T ss_dssp CSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCS--------TTCEEEEEEESC-GGGSCHHHHSTTSSCEEE
T ss_pred CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccc--------cCCEEEEeecCC-hhhCCHhhcCcccCCeEE
Confidence 468999999998732 122333333322111 112233333333 5568888886 664 77
Q ss_pred cCCCCCHHHHHHHHHHhc-------CC-HHHHHHHHHHc-CCC-CHHHHHHHHHHHHHHhhhh-----------CCCccc
Q psy1686 241 PTQPYQDEEIQAILKIRL-------MQ-TDGLRVLTKIA-LDT-SLRYAIQLITTASVVCRRR-----------KATEIC 299 (448)
Q Consensus 241 ~~~pys~~eI~~IL~~Ra-------i~-deal~~La~~a-~~G-d~R~AL~lLe~a~~~a~~~-----------~~~~It 299 (448)
.+...+.++-.+||+.-. .+ +--++.|+... ++| +..+--++...|...|..+ +...|+
T Consensus 174 ~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~ 253 (274)
T 2x8a_A 174 FVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVS 253 (274)
T ss_dssp ECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----------CCBC
T ss_pred EeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCeec
Confidence 888889988888887422 22 22255666542 124 6777777777776655321 123588
Q ss_pred HHHHHHHHHH
Q psy1686 300 MEDIRKVYAL 309 (448)
Q Consensus 300 ~e~V~~~~~l 309 (448)
.+|.++++..
T Consensus 254 ~~df~~al~~ 263 (274)
T 2x8a_A 254 HKHFEEAFKK 263 (274)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 8888888754
No 90
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.00 E-value=0.0036 Score=55.67 Aligned_cols=51 Identities=6% Similarity=-0.139 Sum_probs=34.4
Q ss_pred CCCCCcccccccccc-chhhhhhhHHHHHHHhcCCCC-CCCcccccCCCCCcch
Q psy1686 31 DDSLEPRKVSQGMVG-QLQARRAAGVVLGMIKEEVVM-VWPCVMCGRGKNPQKV 82 (448)
Q Consensus 31 ~~~~~p~~~~~~~VG-Q~~~r~a~~~l~~mI~~~ki~-gpf~~~~G~ei~GKtt 82 (448)
++++++.+ |+++++ ......+...+.+.+++-.+. |..+.++||+..||||
T Consensus 1 ~~r~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTt 53 (180)
T 3ec2_A 1 AKRYWNAN-LDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTH 53 (180)
T ss_dssp CCSCTTCC-SSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHH
T ss_pred CchhhhCc-cccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHH
Confidence 46788887 799996 233334445567777665543 4567899998558986
No 91
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.96 E-value=0.0016 Score=57.52 Aligned_cols=52 Identities=19% Similarity=0.131 Sum_probs=31.8
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC---CCeEEEEecCceeEeeccccCCC--CCCChhhhhhcc
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM---SPVVITATNRGVTKIRGTAYSSP--HGIPIDLLDRMV 238 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~---~pi~IlaT~~~i~lI~~Ttenp~--~~Ip~~lLSR~~ 238 (448)
+++|+|||++.++...+..|...++... .+++|++|+. .|. ..+ ++|.||+.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~----------~p~~l~~~-~~L~SRl~ 140 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY----------TPQQLVIR-EDLRTRMA 140 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS----------CTTTSSCC-HHHHHHGG
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC----------CHHHcccc-HHHHHHHh
Confidence 5899999999998755555555544321 2224445543 221 123 89999984
No 92
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=96.79 E-value=0.0011 Score=82.19 Aligned_cols=77 Identities=17% Similarity=0.243 Sum_probs=57.1
Q ss_pred CeEEEEeccCCCCHH------HHHHHHHhhhhcC-----CCeEEEEecCceeEeeccccCCC-----CCCChhhhhhccc
Q psy1686 176 PGVLFIDEVHMLDIE------CFSFLNRALESEM-----SPVVITATNRGVTKIRGTAYSSP-----HGIPIDLLDRMVI 239 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~------~f~~Llk~lEe~~-----~pi~IlaT~~~i~lI~~Ttenp~-----~~Ip~~lLSR~~i 239 (448)
+.|+||||+||-..+ ...+|...+|..- ...++ +-.++.+|+|+ ||+ +.|++.|++||.+
T Consensus 1337 ~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~--~~~~i~lIaA~--Npp~~gGR~~l~~rllRrf~v 1412 (2695)
T 4akg_A 1337 NLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWV--TIERIHIVGAC--NPPTDPGRIPMSERFTRHAAI 1412 (2695)
T ss_dssp CEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEE--EEESEEEEEEE--CCTTSTTCCCCCHHHHTTEEE
T ss_pred eEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEE--EecCEEEEEec--CCCccCCCccCChhhhheeeE
Confidence 479999999997544 6777777776421 11111 11356777777 555 6899999999999
Q ss_pred ccCCCCCHHHHHHHHHH
Q psy1686 240 IPTQPYQDEEIQAILKI 256 (448)
Q Consensus 240 i~~~pys~~eI~~IL~~ 256 (448)
|.+...+.+++..|+..
T Consensus 1413 i~i~~P~~~~l~~I~~~ 1429 (2695)
T 4akg_A 1413 LYLGYPSGKSLSQIYEI 1429 (2695)
T ss_dssp EECCCCTTTHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 99999999999999873
No 93
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.66 E-value=0.0091 Score=57.48 Aligned_cols=103 Identities=13% Similarity=0.161 Sum_probs=63.7
Q ss_pred CeEEEEeccCCCCH-------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcc-cccCCCCCH
Q psy1686 176 PGVLFIDEVHMLDI-------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV-IIPTQPYQD 247 (448)
Q Consensus 176 ~~VLfIDEVH~L~~-------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~-ii~~~pys~ 247 (448)
+.|+||||+|.++. +....|....+....-.+|+++.... .+...-. ......++..|.. .+.+.||+.
T Consensus 129 ~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~~-~l~~~l~--~~~~~~~l~~~~~~~i~l~pl~~ 205 (350)
T 2qen_A 129 EFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVG-LLHDFLK--ITDYESPLYGRIAGEVLVKPFDK 205 (350)
T ss_dssp CEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSHH-HHHHHHC--TTCTTSTTTTCCCEEEECCCCCH
T ss_pred CEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCcHH-HHHHHHh--hcCCCCccccCccceeeCCCCCH
Confidence 47999999999864 55666666666542223443332210 0000000 0011123444553 899999999
Q ss_pred HHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHH
Q psy1686 248 EEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQL 282 (448)
Q Consensus 248 ~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~l 282 (448)
+|..+++.... ++++++..+.+.+ +|.+++.-.+
T Consensus 206 ~e~~~~l~~~~~~~~~~~~~~~~~~i~~~t-gG~P~~l~~~ 245 (350)
T 2qen_A 206 DTSVEFLKRGFREVNLDVPENEIEEAVELL-DGIPGWLVVF 245 (350)
T ss_dssp HHHHHHHHHHHHTTTCCCCHHHHHHHHHHH-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-CCCHHHHHHH
Confidence 99999988532 7889999999998 9999754333
No 94
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.34 E-value=0.0018 Score=59.16 Aligned_cols=60 Identities=22% Similarity=0.298 Sum_probs=44.9
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccC---CCCCCChhhhhhc-ccccCCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYS---SPHGIPIDLLDRM-VIIPTQPYQ 246 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Tten---p~~~Ip~~lLSR~-~ii~~~pys 246 (448)
+.++||||+|+|+++.+++|.+..++ -.+++ +.|++.+ |+|..++.|++|+ .+.++++..
T Consensus 77 ~dvviIDE~Q~~~~~~~~~l~~l~~~-~~~Vi----------~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ic 140 (184)
T 2orw_A 77 TRGVFIDEVQFFNPSLFEVVKDLLDR-GIDVF----------CAGLDLTHKQNPFETTALLLSLADTVIKKKAVC 140 (184)
T ss_dssp EEEEEECCGGGSCTTHHHHHHHHHHT-TCEEE----------EEEESBCTTSCBCHHHHHHHHHCSEEEECCBCC
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHC-CCCEE----------EEeeccccccCCccchHHHHHHhhheEEeeeec
Confidence 48999999999999999999888875 22333 3334444 8999999999999 466666554
No 95
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.43 E-value=0.023 Score=54.62 Aligned_cols=105 Identities=12% Similarity=0.085 Sum_probs=61.1
Q ss_pred CeEEEEeccCCCCH----HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhc-ccccCCCCCHHHH
Q psy1686 176 PGVLFIDEVHMLDI----ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM-VIIPTQPYQDEEI 250 (448)
Q Consensus 176 ~~VLfIDEVH~L~~----~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~-~ii~~~pys~~eI 250 (448)
+.|+||||+|.++. +...+|....+....-.+|+++...- .+... -+ ......++..|. ..+.+.||+.+|.
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~-~l~~~-l~-~~~~~~~l~~r~~~~i~l~~l~~~e~ 214 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMG-LLYDY-LR-VEDPESPLFGRAFSTVELKPFSREEA 214 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHH-HHHHH-TT-TTCTTSTTTTCCCEEEEECCCCHHHH
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchH-HHHHH-Hh-ccCCCCccccCccceeecCCCCHHHH
Confidence 68999999999864 45666666666532223444433210 00000 00 001112345565 5889999999999
Q ss_pred HHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHH
Q psy1686 251 QAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLIT 284 (448)
Q Consensus 251 ~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe 284 (448)
.+++..+. .+.+....+.+.+ +|.+.+.-.+..
T Consensus 215 ~~~l~~~~~~~~~~~~~~~~i~~~t-~G~P~~l~~~~~ 251 (357)
T 2fna_A 215 IEFLRRGFQEADIDFKDYEVVYEKI-GGIPGWLTYFGF 251 (357)
T ss_dssp HHHHHHHHHHHTCCCCCHHHHHHHH-CSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcHHHHHHHh-CCCHHHHHHHHH
Confidence 99987532 2222236788888 899987655443
No 96
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.98 E-value=0.014 Score=52.59 Aligned_cols=56 Identities=5% Similarity=-0.164 Sum_probs=36.5
Q ss_pred cCCCCCCCCCccccccccccch-hhhhhhHHHHHHHhcCCCCC--CCcccccCCCCCcch
Q psy1686 26 RGLGLDDSLEPRKVSQGMVGQL-QARRAAGVVLGMIKEEVVMV--WPCVMCGRGKNPQKV 82 (448)
Q Consensus 26 ~glgL~~~~~p~~~~~~~VGQ~-~~r~a~~~l~~mI~~~ki~g--pf~~~~G~ei~GKtt 82 (448)
+..++...+++.+ |++++++. ....+...+.+.+++..-.+ +.+.++||+..|||+
T Consensus 11 ~~~~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~ 69 (202)
T 2w58_A 11 QSMFMPREILRAS-LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTY 69 (202)
T ss_dssp EEESSCGGGGCCC-TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHH
T ss_pred HHcCCCHHHHcCC-HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHH
Confidence 4456666677777 79999865 33334456677777653221 457899998558876
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.47 E-value=0.075 Score=54.78 Aligned_cols=53 Identities=23% Similarity=0.215 Sum_probs=28.1
Q ss_pred cccCccCCCCCCCCCccccccccc-cchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch
Q psy1686 21 AHSHIRGLGLDDSLEPRKVSQGMV-GQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV 82 (448)
Q Consensus 21 ~hsHi~glgL~~~~~p~~~~~~~V-GQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt 82 (448)
.|+|-+ |.-+..||.+ ++++- +|..+... +.+.+.+++ +++.+.|++.+|||+
T Consensus 7 ~~~~~~--~~~~~~~p~~-~~~Ln~~Q~~av~~---~~~~i~~~~---~~~li~G~aGTGKT~ 60 (459)
T 3upu_A 7 HHHHSS--GLVPRGSHMT-FDDLTEGQKNAFNI---VMKAIKEKK---HHVTINGPAGTGATT 60 (459)
T ss_dssp ----------------CC-SSCCCHHHHHHHHH---HHHHHHSSS---CEEEEECCTTSCHHH
T ss_pred CCCccC--CCccccCCCc-cccCCHHHHHHHHH---HHHHHhcCC---CEEEEEeCCCCCHHH
Confidence 355544 4456789998 78888 88887644 566667654 256788888569986
No 98
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=92.68 E-value=0.45 Score=37.13 Aligned_cols=58 Identities=22% Similarity=0.333 Sum_probs=48.8
Q ss_pred HHHHHHHhc---CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhc
Q psy1686 250 IQAILKIRL---MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFL 311 (448)
Q Consensus 250 I~~IL~~Ra---i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~ 311 (448)
+..||+.-. +++++...|.+++ -||+.++|.-|..+|.-.|++.|+.+||+-+.+...
T Consensus 7 i~~iLk~~G~~~~~~~v~~~L~e~~----~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~~ 67 (68)
T 1taf_A 7 IMSILKELNVQEYEPRVVNQLLEFT----FRYVTSILDDAKVYANHARKKTIDLDDVRLATEVTL 67 (68)
T ss_dssp HHHHHHHTTCCCBCTHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC
T ss_pred HHHHHHHCCCcccCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcc
Confidence 567777322 9999999999998 599999999999999766888999999998887543
No 99
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=89.56 E-value=0.1 Score=51.25 Aligned_cols=57 Identities=11% Similarity=-0.020 Sum_probs=34.5
Q ss_pred ccCCCCCCCCCccccccccccch-hhhhhhHHHHHHHhcCCC-CCCCcccccCCCCCcch
Q psy1686 25 IRGLGLDDSLEPRKVSQGMVGQL-QARRAAGVVLGMIKEEVV-MVWPCVMCGRGKNPQKV 82 (448)
Q Consensus 25 i~glgL~~~~~p~~~~~~~VGQ~-~~r~a~~~l~~mI~~~ki-~gpf~~~~G~ei~GKtt 82 (448)
++-.++...+++.+ |++|++.. ....+...+.+.+++..- .++.+.++||+..|||.
T Consensus 109 ~~~~~l~~~~~~~t-fd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~ 167 (308)
T 2qgz_A 109 IQLVSLPKSYRHIH-LSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSY 167 (308)
T ss_dssp EEEESSCGGGGSCC-GGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHH
T ss_pred HHHcCCCHHHHhCC-HhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHH
Confidence 34456666677777 79999633 222233445666665321 13457899998558875
No 100
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=87.68 E-value=0.52 Score=45.88 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=50.9
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhh--------h------cCCCeEEEEecCceeEe-eccccCCCCCCChhhhhhccccc
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALE--------S------EMSPVVITATNRGVTKI-RGTAYSSPHGIPIDLLDRMVIIP 241 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lE--------e------~~~pi~IlaT~~~i~lI-~~Ttenp~~~Ip~~lLSR~~ii~ 241 (448)
.|++.||..+.+ ++++.+-+.++ - ...+-+|+.||..+... .+... +...-++|.|||.+|+
T Consensus 150 ~i~l~Ee~~~~~-d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~--s~~~~~~L~sR~~~f~ 226 (267)
T 1u0j_A 150 MVIWWEEGKMTA-KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNST--TFEHQQPLQDRMFKFE 226 (267)
T ss_dssp SEEEECSCCEET-TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEE--ECTTHHHHHTTEEEEE
T ss_pred EEEEeccccchh-HHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCcc--chhhhHHHhhhEEEEE
Confidence 567778887764 66677777776 1 12345566777765332 22111 1234578999999999
Q ss_pred CC--------CCCHHHHHHHHH
Q psy1686 242 TQ--------PYQDEEIQAILK 255 (448)
Q Consensus 242 ~~--------pys~~eI~~IL~ 255 (448)
|. +++.++++..++
T Consensus 227 F~~~~p~~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 227 LTRRLDHDFGKVTKQEVKDFFR 248 (267)
T ss_dssp CCSCCCTTSCCCCHHHHHHHHH
T ss_pred CCCcCCcccCCCCHHHHHHHHH
Confidence 99 899999988876
No 101
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=86.88 E-value=2.4 Score=32.58 Aligned_cols=57 Identities=18% Similarity=0.315 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHH
Q psy1686 246 QDEEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 246 s~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~ 307 (448)
+..-+..|++ ++ +++++...|.+.. -++..++++.|..+|...+++.|+.+||+-+.
T Consensus 8 p~a~v~Rl~r-~~g~~ris~~a~~~l~e~~----~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~ 68 (70)
T 1ku5_A 8 PIAPVDRLIR-KAGAERVSEQAAKVLAEYL----EEYAIEIAKKAVEFARHAGRKTVKVEDIKLAI 68 (70)
T ss_dssp CHHHHHHHHH-HTTCSEECHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred ChHHHHHHHH-HcCcceeCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 3445666776 44 9999999999987 47999999999999987788899999998765
No 102
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=84.70 E-value=0.83 Score=41.04 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=45.9
Q ss_pred CeEEEEeccC---CCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhh--cccccCCCCCHHHH
Q psy1686 176 PGVLFIDEVH---MLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDR--MVIIPTQPYQDEEI 250 (448)
Q Consensus 176 ~~VLfIDEVH---~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR--~~ii~~~pys~~eI 250 (448)
|.++++||++ .|+...+..+.+.+++. ...+|+++-. + . ...+...+.+| |.++.+.+.+.+++
T Consensus 100 p~llilDEigp~~~ld~~~~~~l~~~l~~~-~~~~i~~~H~--------~-h-~~~~~~~i~~r~~~~i~~~~~~~r~~~ 168 (178)
T 1ye8_A 100 RKVIIIDEIGKMELFSKKFRDLVRQIMHDP-NVNVVATIPI--------R-D-VHPLVKEIRRLPGAVLIELTPENRDVI 168 (178)
T ss_dssp TCEEEECCCSTTGGGCHHHHHHHHHHHTCT-TSEEEEECCS--------S-C-CSHHHHHHHTCTTCEEEECCTTTTTTH
T ss_pred CCEEEEeCCCCcccCCHHHHHHHHHHHhcC-CCeEEEEEcc--------C-C-CchHHHHHHhcCCcEEEEecCcCHHHH
Confidence 6899999975 45788899999999873 3335545421 0 0 12233567777 78999999887777
Q ss_pred HHHH
Q psy1686 251 QAIL 254 (448)
Q Consensus 251 ~~IL 254 (448)
..-|
T Consensus 169 ~~~l 172 (178)
T 1ye8_A 169 LEDI 172 (178)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 103
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=83.41 E-value=5.1 Score=39.83 Aligned_cols=92 Identities=16% Similarity=0.165 Sum_probs=51.9
Q ss_pred cCeEEEEeccCCCC----HHHHHHHHHhhhhcCC--CeEEEEecCceeEeeccccCCCC-CCChhhhhhcccccCCCCCH
Q psy1686 175 VPGVLFIDEVHMLD----IECFSFLNRALESEMS--PVVITATNRGVTKIRGTAYSSPH-GIPIDLLDRMVIIPTQPYQD 247 (448)
Q Consensus 175 ~~~VLfIDEVH~L~----~~~f~~Llk~lEe~~~--pi~IlaT~~~i~lI~~Ttenp~~-~Ip~~lLSR~~ii~~~pys~ 247 (448)
.+.+++|||+|.+. ....++|.+.+.+.-. -.++++|-.--.+. ++.- ..-.++++.|...-+-+.+.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~-----~~~~~~~~~~il~n~~~~i~l~~~~ 336 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFL-----APEVQRYGQALLDNPTYKLLLAQGE 336 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGG-----STTTHHHHHHHHHSCSEEEECSCCH
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhh-----ChhhHHHHHHHHHhhhhhheeCCCh
Confidence 37899999999995 3355556655554332 24555555411000 0000 00147888887444455667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHc
Q psy1686 248 EEIQAILKIRLMQTDGLRVLTKIA 271 (448)
Q Consensus 248 ~eI~~IL~~Rai~deal~~La~~a 271 (448)
.++..+.+.-.++++..++|....
T Consensus 337 ~~~~~~~~~~~ls~~e~~~l~~~~ 360 (392)
T 4ag6_A 337 KDLEAITTLMNLSEAEHDLLVNAK 360 (392)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCC
T ss_pred hhHHHHHHHhCCCHHHHHhccCCC
Confidence 776655441118888887776654
No 104
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=81.12 E-value=4.2 Score=33.78 Aligned_cols=60 Identities=10% Similarity=0.041 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 245 YQDEEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 245 ys~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
++..-|..+++ ++ |++++.+.|+... -.+.-++++.|..+|+..+++.|+.+||..++..
T Consensus 30 ip~~~I~Rlar-~~G~~rIs~~a~~~l~~vl----e~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~ 93 (103)
T 1tzy_D 30 ITKPAIRRLAR-RGGVKRISGLIYEETRGVL----KVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 93 (103)
T ss_dssp SCHHHHHHHHH-HTTCCEECTTHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCHHHHHHHHH-HcCccccCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 44556777777 44 8889988888876 3577788889988887677889999999988874
No 105
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=80.87 E-value=4.4 Score=33.67 Aligned_cols=60 Identities=10% Similarity=0.068 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 245 YQDEEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 245 ys~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
++..-|..+++ ++ |++++.+.|+... -.+.-++++.|..+|+..+++.|+.+||..++..
T Consensus 30 ip~~~I~Rlar-~~G~~rIs~~a~~~l~~vl----e~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~ 93 (103)
T 2yfw_B 30 ITKPAIRRLAR-RGGVKRISGLIYEEVRNVL----KTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKR 93 (103)
T ss_dssp CCHHHHHHHHH-HTTCCEECTTHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCHHHHHHHHH-HcCccccCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 44446677776 44 8888888888776 2577788888988887677889999999988874
No 106
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=79.83 E-value=3.2 Score=33.61 Aligned_cols=70 Identities=11% Similarity=0.286 Sum_probs=47.9
Q ss_pred CCCCChhhhhhcccccCCCCCHHHHHHHHHHhcCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHH
Q psy1686 226 PHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLMQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRK 305 (448)
Q Consensus 226 ~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Rai~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~ 305 (448)
..++|+++++|++-..|+.=. - | |+++|+.+++++- +- +.-..+.+|...|+.++...|+.+|+++
T Consensus 10 ~~~i~~~li~ril~~~F~~~k-------T--k-Is~dAl~l~aeyl-~i---FV~EAv~RA~~~a~~e~~~~le~e~LEk 75 (84)
T 4dra_E 10 GSGFRKELVSRLLHLHFKDDK-------T--K-VSGDALQLMVELL-KV---FVVEAAVRGVRQAQAEDALRVDVDQLEK 75 (84)
T ss_dssp -CCCCHHHHHHHHHTTCSSTT-------C--E-ECHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCC-------c--c-ccHHHHHHHHHHH-HH---HHHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 445899999998665554211 0 2 8899999888885 21 3344455666666556778999999999
Q ss_pred HHHH
Q psy1686 306 VYAL 309 (448)
Q Consensus 306 ~~~l 309 (448)
++..
T Consensus 76 i~pQ 79 (84)
T 4dra_E 76 VLPQ 79 (84)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9864
No 107
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=79.72 E-value=5.1 Score=33.88 Aligned_cols=56 Identities=16% Similarity=0.265 Sum_probs=46.3
Q ss_pred HHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 249 EIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 249 eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
-|+.|.+ ++ |++++.+.|.+.. -+++.++..-|..+|+..+++.|+.+||..++..
T Consensus 12 ~I~Ri~r-~~g~~rIS~~a~~~l~e~l----~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr 71 (111)
T 3b0c_T 12 LIKQIFS-HYVKTPVTRDAYKIVEKCS----ERYFKQISSDLEAYSQHAGRKTVEMADVELLMRR 71 (111)
T ss_dssp HHHHHHH-HHHCSCBCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHH-HCCCCccCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 5666666 44 9999999998887 4688888898988887778889999999999974
No 108
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=76.80 E-value=6.5 Score=32.71 Aligned_cols=60 Identities=8% Similarity=0.054 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 245 YQDEEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 245 ys~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
++..-|+.|.+ ++ |++++.+.|.+.. -.+.-+++..|..+++..+++.|+.+||..++..
T Consensus 29 ip~~~I~Rlar-~~Gv~rIS~da~~~l~~~l----e~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr 92 (102)
T 1id3_B 29 ITKPAIRRLAR-RGGVKRISGLIYEEVRAVL----KSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 92 (102)
T ss_dssp SCHHHHHHHHH-HTTCCEECTTHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCHHHHHHHHH-HcCchhccHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 44445666666 44 8888888887765 2466777788888887667889999999998874
No 109
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=74.94 E-value=5.1 Score=51.07 Aligned_cols=76 Identities=14% Similarity=0.200 Sum_probs=54.4
Q ss_pred CeEEEEeccCCCCHH------HHHHHHHhhhhcC-----CCeEEEEecCceeEeeccccCCC-----CCCChhhhhhccc
Q psy1686 176 PGVLFIDEVHMLDIE------CFSFLNRALESEM-----SPVVITATNRGVTKIRGTAYSSP-----HGIPIDLLDRMVI 239 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~------~f~~Llk~lEe~~-----~pi~IlaT~~~i~lI~~Ttenp~-----~~Ip~~lLSR~~i 239 (448)
+.|+||||++|-..+ ...+|...+|..- ...++- -.++.+|++. ||| +.+|+.|++||.+
T Consensus 1375 ~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~--i~d~~~vaam--nPp~~gGr~~l~~Rf~r~F~v 1450 (3245)
T 3vkg_A 1375 WLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIK--LDKIQFVGAC--NPPTDAGRVQLTHRFLRHAPI 1450 (3245)
T ss_dssp EEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEE--ESSEEEEEEE--CCTTSTTCCCCCHHHHTTCCE
T ss_pred eEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEE--ecCeEEEEEc--CCCCCCCCccCCHHHHhhceE
Confidence 369999999998654 6777777777421 112221 1345556553 333 6699999999999
Q ss_pred ccCCCCCHHHHHHHHH
Q psy1686 240 IPTQPYQDEEIQAILK 255 (448)
Q Consensus 240 i~~~pys~~eI~~IL~ 255 (448)
+.+...+.+++..|..
T Consensus 1451 i~i~~ps~esL~~If~ 1466 (3245)
T 3vkg_A 1451 LLVDFPSTSSLTQIYG 1466 (3245)
T ss_dssp EECCCCCHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHH
Confidence 9999999999998854
No 110
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=74.81 E-value=8.1 Score=30.82 Aligned_cols=58 Identities=10% Similarity=0.047 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 247 DEEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 247 ~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
..-|+.|.+ ++ +++++.+.+.+.. -.+.-+++..|..+++..+++.|+.+||..++..
T Consensus 13 ~~~I~Riar-~~Gv~rIs~da~~~l~~~l----~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~ 74 (84)
T 2hue_C 13 KPAIRRLAR-RGGVKRISGLIYEETRGVL----KVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 74 (84)
T ss_dssp HHHHHHHHH-HTTCCEECTTHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHH-HcCchhccHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 335666666 44 8888888887765 2466777888888887677889999999988763
No 111
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=72.80 E-value=12 Score=29.06 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=39.9
Q ss_pred HHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 249 EIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 249 eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
-+..|++..- ++.+|.+.+.+.+. -+...+-..|...|...+++.|+.+||..++...
T Consensus 9 ~V~rI~K~~~p~~~is~~A~~~i~~~~~----~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 9 TLRKIIKKHKPHLRLAANTDLLVHLSFL----LFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp HHHHHHHHHCTTCEECTTHHHHHHHHHH----HHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4566666221 88888888877762 2444444556667777788999999999998754
No 112
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=72.42 E-value=14 Score=32.97 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=47.7
Q ss_pred HHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 248 EEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 248 ~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
.-+..|++ ++ ++.+|.+.+++... -++.++...|..+|...+++.|+.+||..++...
T Consensus 86 a~V~Ri~k-~~g~~RVS~~A~~~l~~~le----~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 86 ATVRRILK-RAGIERASSDAVDLYNKLIC----RATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp HHHHHHHH-HTTCCEECHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred cHHHHHHH-HcCCccchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 35666777 44 99999999988872 4888899999999987888999999999998754
No 113
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=71.97 E-value=13 Score=41.53 Aligned_cols=40 Identities=10% Similarity=-0.119 Sum_probs=25.2
Q ss_pred ccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch
Q psy1686 40 SQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV 82 (448)
Q Consensus 40 ~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt 82 (448)
...|||.+..... |.+++....=....+.++|+..-||||
T Consensus 123 ~~~~vgR~~~~~~---l~~~l~~~~~~~~~v~i~G~gG~GKTt 162 (1249)
T 3sfz_A 123 PVIFVTRKKLVHA---IQQKLWKLNGEPGWVTIYGMAGCGKSV 162 (1249)
T ss_dssp CSSCCCCHHHHHH---HHHHHHTTTTSCEEEEEECSTTSSHHH
T ss_pred CceeccHHHHHHH---HHHHHhhccCCCCEEEEEeCCCCCHHH
Confidence 4779999988755 566664322112346788876238886
No 114
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=68.07 E-value=17 Score=32.43 Aligned_cols=58 Identities=12% Similarity=0.163 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhc-----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 247 DEEIQAILKIRL-----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 247 ~~eI~~IL~~Ra-----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
..-+..|++ ++ ++.+|.+.|++.. -.++..+...|..+|...+++.|+.+||..+++.
T Consensus 7 ~a~V~Riik-~~lg~~rVS~dA~~~l~~~l----~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~ 69 (154)
T 1f1e_A 7 KAAIERIFR-QGIGERRLSQDAKDTIYDFV----PTMAEYVANAAKSVLDASGKKTLMEEHLKALADV 69 (154)
T ss_dssp HHHHHHHHH-TTSTTCEECHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred ccHHHHHHH-hcCCccchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence 335667777 44 9999999999887 2478888888999998788899999999998853
No 115
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=66.11 E-value=21 Score=30.33 Aligned_cols=60 Identities=13% Similarity=0.144 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 245 YQDEEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 245 ys~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+....|+.|++.-- ++.+|..++++.+. =..-.+++.|...|...+++.|+.+||..+..
T Consensus 42 lPvaRIkrImK~d~~~~~is~eA~v~la~a~E----~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~ 105 (119)
T 4g92_C 42 LPLARIKKVMKADPEVKMISAEAPILFAKGCD----VFITELTMRAWIHAEDNKRRTLQRSDIAAALS 105 (119)
T ss_dssp SCHHHHHHHHHTSTTCCEECTHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred CCHHHHHHHHhhCCccccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcccCccCHHHHHHHHh
Confidence 44446788887211 88899988888762 24556777888888777888999999998885
No 116
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=65.86 E-value=2.8 Score=38.49 Aligned_cols=57 Identities=11% Similarity=0.022 Sum_probs=32.8
Q ss_pred CeEEEEeccCCC--CH-HHH--HHHHHhhhhcCC--CeEEEEecCceeEeeccccCCCCCCChhhhhhcc-cccCCC
Q psy1686 176 PGVLFIDEVHML--DI-ECF--SFLNRALESEMS--PVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV-IIPTQP 244 (448)
Q Consensus 176 ~~VLfIDEVH~L--~~-~~f--~~Llk~lEe~~~--pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~-ii~~~p 244 (448)
..|++|||+|++ .. +.. .-++..++..-. -.+|+.|+. +-.++.++++|+. .+.+.+
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~------------~~~l~~~lr~ri~~~~~l~~ 152 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG------------PKLLDQNLRTLVRKHYHIAS 152 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC------------GGGBCHHHHTTEEEEEEEEE
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC------------HHHHhHHHHHHhheEEEEcC
Confidence 589999999998 22 111 113334443221 255566654 4567788888874 444444
No 117
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=63.70 E-value=5.2 Score=42.63 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=23.5
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhh
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALE 200 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lE 200 (448)
..++++|||++|++...++.|++++.
T Consensus 279 ~~dvlIIDEasml~~~~~~~Ll~~~~ 304 (574)
T 3e1s_A 279 PYDLLIVDEVSMMGDALMLSLLAAVP 304 (574)
T ss_dssp SCSEEEECCGGGCCHHHHHHHHTTSC
T ss_pred cCCEEEEcCccCCCHHHHHHHHHhCc
Confidence 45899999999999999999998876
No 118
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=63.56 E-value=27 Score=28.41 Aligned_cols=45 Identities=9% Similarity=0.002 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~ 307 (448)
++++++..|+++. -+++.++..-+..+|.-.|++.|+.+||+-+.
T Consensus 33 vs~~~i~aL~e~~----~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~ 77 (90)
T 3v9r_A 33 YTPRFINSLLELA----YLQLGEMGSDLQAFARHAGRGVVNKSDLMLYL 77 (90)
T ss_dssp CCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHT
T ss_pred eCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 8999999998887 57888888888888876688899999998544
No 119
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=63.06 E-value=38 Score=27.00 Aligned_cols=72 Identities=15% Similarity=0.302 Sum_probs=49.2
Q ss_pred CCCChhhhhhcccccCCCCCHHHHHHHHHHhcCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHH
Q psy1686 227 HGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLMQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKV 306 (448)
Q Consensus 227 ~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Rai~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~ 306 (448)
..+|++++.|++--.|+.= +.| |+++|+.+++++- + -+.-..+.+|...|..++...|+.+|++++
T Consensus 7 ~~~~~~lI~ril~~~f~~~---------ktr-I~~dAl~l~aeyl-~---iFV~EAv~RA~~~a~~e~~~~le~~~LEki 72 (81)
T 3b0b_C 7 GGFRKETVERLLRLHFRDG---------RTR-VNGDALLLMAELL-K---VFVREAAARAARQAQAEDLEKVDIEHVEKV 72 (81)
T ss_dssp CCCCHHHHHHHHHHHCCST---------TCE-ECHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhccC---------ccc-ccHHHHHHHHHHH-H---HHHHHHHHHHHHHHHhCCCCeecHHHHHHH
Confidence 3479999998865455431 112 9999999999885 2 133344566666565577889999999999
Q ss_pred HHH-hcc
Q psy1686 307 YAL-FLD 312 (448)
Q Consensus 307 ~~l-f~D 312 (448)
+.. .+|
T Consensus 73 ~pqLlLD 79 (81)
T 3b0b_C 73 LPQLLLD 79 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 864 345
No 120
>1f6v_A DNA transposition protein; MU phage, recombination, ATPase, DNA binding, high salt, solution structure, DNA binding protein; HET: DNA; NMR {Enterobacteria phage MU} SCOP: a.49.1.1
Probab=62.95 E-value=3.3 Score=34.04 Aligned_cols=65 Identities=15% Similarity=0.249 Sum_probs=50.4
Q ss_pred cCCCCCHHHHHHHHHHhc---CCHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 241 PTQPYQDEEIQAILKIRL---MQTDGLRVLTKIAL-DTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 241 ~~~pys~~eI~~IL~~Ra---i~deal~~La~~a~-~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
.++.-..+||+.|++ | -+++++.++..++. .|.+|.--..|..|..+|...+ ..|+.++|+.++.
T Consensus 9 ~i~k~kk~DI~Aia~--AW~v~d~~~~~~l~~I~~KpGaLR~ltktLrLA~m~A~G~g-~~i~~~~I~~A~~ 77 (91)
T 1f6v_A 9 AINKTKKADVKAIAD--AWQINGEKELELLQQIAQKPGALRILNHSLRLAAMTAHGKG-ERVNEDYLRQAFR 77 (91)
T ss_dssp CCSSCSGGGTTHHHH--SSTTSSSHHHHHHHTTSSSCSCHHHHHHHHGGGTCTTCTTS-CCSSHHHHHHHHT
T ss_pred hccCCCHHHHHHHHH--HhCCCCHHHHHHHHHHccCccHHHHHHHHHHHHHHHhccCC-CcCCHHHHHHHHH
Confidence 345556678888876 5 47788999999984 4689999999999988875333 4599999999986
No 121
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=62.78 E-value=30 Score=25.99 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++.+|+..+.+.+. -+...+.+.|...|...+++.|+.+||..+..
T Consensus 20 is~~A~~~l~~a~e----~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~ 65 (68)
T 1b67_A 20 VSDDARIALAKVLE----EMGEEIASEAVKLAKHAGRKTIKAEDIELARK 65 (68)
T ss_dssp ECHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTCSEECHHHHHHHGG
T ss_pred CCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 89999999988872 36777888888888777888999999998765
No 122
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=61.93 E-value=34 Score=27.01 Aligned_cols=63 Identities=19% Similarity=0.303 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhc
Q psy1686 245 YQDEEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFL 311 (448)
Q Consensus 245 ys~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~ 311 (448)
++...|.+.++.-. +++++-++|.++| + -+--+.++.|..+|..+++..++..||+-.+..-+
T Consensus 6 l~k~~L~~Lv~~idp~~~ld~~vee~ll~lA-D---dFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler~w 72 (76)
T 1h3o_B 6 LTKKKLQDLVREVDPNEQLDEDVEEMLLQIA-D---DFIESVVTAACQLARHRKSSTLEVKDVQLHLERQW 72 (76)
T ss_dssp SCHHHHHHHHHHHCSSCCCCHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-H---HHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhhc
Confidence 46667777777433 9999999999998 2 25556777888888878888899999987766433
No 123
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=61.41 E-value=15 Score=39.33 Aligned_cols=69 Identities=19% Similarity=0.154 Sum_probs=49.9
Q ss_pred CeEEEEeccCCC----CHHHHHHHHHhhhhcCCC--eEEEEecCceeEeeccccCCC-CCCChhhhhhcc-cccCCCCCH
Q psy1686 176 PGVLFIDEVHML----DIECFSFLNRALESEMSP--VVITATNRGVTKIRGTAYSSP-HGIPIDLLDRMV-IIPTQPYQD 247 (448)
Q Consensus 176 ~~VLfIDEVH~L----~~~~f~~Llk~lEe~~~p--i~IlaT~~~i~lI~~Ttenp~-~~Ip~~lLSR~~-ii~~~pys~ 247 (448)
+-+++|||+|.| .+++.+.|.+....--.. .+|++|.+ |. -.|+..+++-|. -|-|.--+.
T Consensus 344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQR-----------Ps~d~I~~~Iran~~~RI~lrv~s~ 412 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQR-----------PSVDVITGLIKANIPTRIAFQVSSK 412 (574)
T ss_dssp EEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESC-----------CCTTTSCHHHHHTCCEEEEECCSCH
T ss_pred cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecC-----------cccccccHHHHhhhccEEEEEcCCH
Confidence 468999999988 456777777777765543 66667666 22 157888887775 566777888
Q ss_pred HHHHHHHH
Q psy1686 248 EEIQAILK 255 (448)
Q Consensus 248 ~eI~~IL~ 255 (448)
.|.+.||.
T Consensus 413 ~Dsr~ILd 420 (574)
T 2iut_A 413 IDSRTILD 420 (574)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 88888885
No 124
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=60.29 E-value=8 Score=35.80 Aligned_cols=49 Identities=18% Similarity=0.288 Sum_probs=31.8
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeecc--c-cCCCCCCChhhhhhc
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGT--A-YSSPHGIPIDLLDRM 237 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~T--t-enp~~~Ip~~lLSR~ 237 (448)
.+++|||+|.| +++.++++...+. --|++ +.|. | .+-+|+--+.|+..+
T Consensus 93 DvIlIDEaQFf-k~~ve~~~~L~~~-gk~VI----------~~GL~~DF~~~~F~~~~~Ll~~A 144 (195)
T 1w4r_A 93 AVIGIDEGQFF-PDIVEFCEAMANA-GKTVI----------VAALDGTFQRKPFGAILNLVPLA 144 (195)
T ss_dssp SEEEESSGGGC-TTHHHHHHHHHHT-TCEEE----------EEEESBCTTSSBCTTGGGGGGGC
T ss_pred CEEEEEchhhh-HHHHHHHHHHHHC-CCeEE----------EEecccccccccchhHHHHHHhc
Confidence 79999999999 8888888777752 22333 2223 2 234666556666655
No 125
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=60.10 E-value=27 Score=26.56 Aligned_cols=64 Identities=22% Similarity=0.206 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhc----CC-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 247 DEEIQAILKIRL----MQ-TDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 247 ~~eI~~IL~~Ra----i~-deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
.++-.+||+... ++ +--++.|++.+.+-+..+--++...|+..|..++...|+.+|+..++...
T Consensus 5 ~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 5 EEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp HHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 344455665332 33 33478899988334888888999999888876777789999999998754
No 126
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=58.27 E-value=11 Score=34.13 Aligned_cols=53 Identities=28% Similarity=0.313 Sum_probs=32.8
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccc-cCCCCCCChhhhhhc
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTA-YSSPHGIPIDLLDRM 237 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Tt-enp~~~Ip~~lLSR~ 237 (448)
..+++|||++.|+++..++|....++ -.|+++ +.-+ +| .+.+|+-++.|+..+
T Consensus 82 ~dvViIDEaqfl~~~~v~~l~~l~~~-~~~Vi~-~Gl~-------~df~~~~F~~~~~L~~~A 135 (191)
T 1xx6_A 82 TEVIAIDEVQFFDDEIVEIVNKIAES-GRRVIC-AGLD-------MDFRGKPFGPIPELMAIA 135 (191)
T ss_dssp CSEEEECSGGGSCTHHHHHHHHHHHT-TCEEEE-EECS-------BCTTSCBCTTHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC-CCEEEE-Eecc-------cccccCcCccHHHHHHHc
Confidence 37999999999999888877665543 233332 2111 12 234666666666554
No 127
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=58.17 E-value=30 Score=28.14 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 246 QDEEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 246 s~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
...-|+.|++.-- ++.+|..++++.+. -+...+++.|...|...+++.|+.+||..+..
T Consensus 21 P~arIkrImK~~~~~~~is~eA~~~laka~E----~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~ 83 (97)
T 1n1j_B 21 PLARIKKIMKLDEDVKMISAEAPVLFAKAAQ----IFITELTLRAWIHTEDNKRRTLQRNDIAMAIT 83 (97)
T ss_dssp CHHHHHHHHTTSTTCCCBCTHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred CHHHHHHHHccCccccccChHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCccCCHHHHHHHHh
Confidence 3346677776211 89999999988872 36667888888888767788999999998875
No 128
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=57.47 E-value=72 Score=25.47 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=43.1
Q ss_pred HHHHHHHHhc-----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 249 EIQAILKIRL-----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 249 eI~~IL~~Ra-----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
-+..|++.-. ++.+|...+.+.+. -+...+...|...|...+++.|+.+||..++..
T Consensus 13 ~i~ri~K~~~~~~~~is~dA~~~l~~a~e----~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~ 74 (93)
T 1n1j_A 13 NVARIMKNAIPQTGKIAKDAKECVQECVS----EFISFITSEASERCHQEKRKTINGEDILFAMST 74 (93)
T ss_dssp HHHHHHHHTSCTTCEECHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHhCCccceeCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 4555555331 99999999988872 366667777877887678889999999999974
No 129
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=57.31 E-value=1.4e+02 Score=37.80 Aligned_cols=105 Identities=20% Similarity=0.274 Sum_probs=64.5
Q ss_pred eEEEEeccCCCCHHHHHHH-------HHhhhhcCC------------C-eEEEEe-cCceeEeeccccCCCCCCChhhhh
Q psy1686 177 GVLFIDEVHMLDIECFSFL-------NRALESEMS------------P-VVITAT-NRGVTKIRGTAYSSPHGIPIDLLD 235 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~L-------lk~lEe~~~------------p-i~IlaT-~~~i~lI~~Ttenp~~~Ip~~lLS 235 (448)
..+++||+++++.+..++| ..++.+... | ..+++| |-+ +-....+|..|.+
T Consensus 699 aw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPg--------y~g~~eLP~~Lk~ 770 (2695)
T 4akg_A 699 AWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPG--------YNGRSELPENLKK 770 (2695)
T ss_dssp CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCC--------SSSSCCCCHHHHT
T ss_pred CEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCC--------ccCcccccHHHHh
Confidence 6789999999999998888 344433211 1 111111 110 1123469999999
Q ss_pred hcccccCCCCCHHHHHHHHHHhc-C-CHHHH-H-------HHHHH-c----CCCCHHHHHHHHHHHHHH
Q psy1686 236 RMVIIPTQPYQDEEIQAILKIRL-M-QTDGL-R-------VLTKI-A----LDTSLRYAIQLITTASVV 289 (448)
Q Consensus 236 R~~ii~~~pys~~eI~~IL~~Ra-i-~deal-~-------~La~~-a----~~Gd~R~AL~lLe~a~~~ 289 (448)
||.-+.+..-+.+.+.+|+-... + +...+ . ++.+. + .+-++|...++|..|...
T Consensus 771 ~Fr~v~m~~Pd~~~i~ei~l~s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~l 839 (2695)
T 4akg_A 771 SFREFSMKSPQSGTIAEMILQIMGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPL 839 (2695)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred heEEEEeeCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHh
Confidence 99999998889998988865333 2 22222 1 12211 1 134788888888877654
No 130
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=57.19 E-value=48 Score=28.14 Aligned_cols=46 Identities=15% Similarity=0.300 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++..|+++. -+++.++..-+..+|.-.|++.|+.+||+-+..
T Consensus 48 vS~~ai~aL~El~----~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~R 93 (113)
T 4dra_A 48 FSKQTIAAISELT----FRQCENFAKDLEMFARHAKRTTINTEDVKLLAR 93 (113)
T ss_dssp BCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred cCHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 9999999999987 578888888888888766888999999985543
No 131
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=57.03 E-value=8.3 Score=35.71 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=18.5
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhh
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRAL 199 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~l 199 (448)
.++++|||+|++....+..+.+.+
T Consensus 193 ~~llIiDEaH~l~~~~~~~i~~~~ 216 (237)
T 2fz4_A 193 FMLLIFDEVHHLPAESYVQIAQMS 216 (237)
T ss_dssp CSEEEEECSSCCCTTTHHHHHHTC
T ss_pred CCEEEEECCccCCChHHHHHHHhc
Confidence 489999999999877766555544
No 132
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=56.80 E-value=66 Score=24.88 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHhc---CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 244 PYQDEEIQAILKIRL---MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 244 pys~~eI~~IL~~Ra---i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
-++.+-++.|.+.-. ++|++...|++-. + -++-.+++.|..++...+++.++.+||..++.
T Consensus 6 ~lp~~~v~~iaes~Gi~~lsddaa~~LA~dv-E---yr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 6 SISAESMKVIAESIGVGSLSDDAAKELAEDV-S---IKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCHHHHHHHHHHTTCCCBCHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred cCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 456667778877322 9999999998876 2 35567777888777655778999999998763
No 133
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=53.68 E-value=11 Score=35.32 Aligned_cols=53 Identities=21% Similarity=0.207 Sum_probs=33.6
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccc-cCCCCCCChhhhhhc
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTA-YSSPHGIPIDLLDRM 237 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Tt-enp~~~Ip~~lLSR~ 237 (448)
..+++|||++.|+.++.++|.....+ -.|+++ +--+ || .+-+|+-++.|+..+
T Consensus 102 ~dvViIDEaQF~~~~~V~~l~~l~~~-~~~Vi~-~Gl~-------~DF~~~~F~~~~~Ll~~A 155 (214)
T 2j9r_A 102 MDVIAIDEVQFFDGDIVEVVQVLANR-GYRVIV-AGLD-------QDFRGLPFGQVPQLMAIA 155 (214)
T ss_dssp CCEEEECCGGGSCTTHHHHHHHHHHT-TCEEEE-EECS-------BCTTSCBCTTHHHHHHHC
T ss_pred CCEEEEECcccCCHHHHHHHHHHhhC-CCEEEE-Eecc-------cccccCccccHHHHHHhc
Confidence 48999999999999998877665442 223332 2111 23 234677777777665
No 134
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=53.67 E-value=41 Score=28.23 Aligned_cols=46 Identities=15% Similarity=0.296 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++..|+++. -||+.++..-+..+|.-.|++.|+.+||+-+..
T Consensus 40 vs~~~i~aL~E~~----~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~R 85 (107)
T 3b0b_B 40 FSKQTVAAISEIT----FRQCENFARDLEMFARHAKRSTITSEDVKLLAR 85 (107)
T ss_dssp ECHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred cCHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHH
Confidence 9999999998887 588999999888888766888999999996664
No 135
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=53.17 E-value=66 Score=27.59 Aligned_cols=57 Identities=16% Similarity=0.286 Sum_probs=42.1
Q ss_pred HHHHHHHHhc-----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 249 EIQAILKIRL-----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 249 eI~~IL~~Ra-----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
-|..|++.-. ++.+|...|++.+. -+...+-..|...|...+++.|+.+||..++..
T Consensus 14 ~I~rImK~~~pd~~~iS~dA~~~l~ka~e----~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~ 75 (128)
T 2byk_B 14 VIGRLIKEALPESASVSKEARAAIARAAS----VFAIFVTSSSTALAHKQNHKTITAKDILQTLTE 75 (128)
T ss_dssp HHHHHHHHHSCTTCEECHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhCcccceECHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 4566666211 99999999988872 255555566777777678889999999999974
No 136
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=53.10 E-value=12 Score=35.23 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=22.4
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhh
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALE 200 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lE 200 (448)
..+++|||++.|+.++.++|.+..+
T Consensus 102 ~dvV~IDEaQFf~~~~v~~l~~la~ 126 (219)
T 3e2i_A 102 VDVIGIDEVQFFDDEIVSIVEKLSA 126 (219)
T ss_dssp CSEEEECCGGGSCTHHHHHHHHHHH
T ss_pred CCEEEEechhcCCHHHHHHHHHHHH
Confidence 3799999999999999999998873
No 137
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=52.47 E-value=17 Score=33.97 Aligned_cols=53 Identities=25% Similarity=0.242 Sum_probs=32.5
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccc-cCCCCCCChhhhhhc
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTA-YSSPHGIPIDLLDRM 237 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Tt-enp~~~Ip~~lLSR~ 237 (448)
+.+++|||++.|+.++...+...... -.|+++..-. +| ...+|+.++.|+..+
T Consensus 90 ~dvViIDEaQ~l~~~~ve~l~~L~~~-gi~Vil~Gl~--------~df~~~~F~~~~~Ll~lA 143 (223)
T 2b8t_A 90 TKVIGIDEVQFFDDRICEVANILAEN-GFVVIISGLD--------KNFKGEPFGPIAKLFTYA 143 (223)
T ss_dssp CCEEEECSGGGSCTHHHHHHHHHHHT-TCEEEEECCS--------BCTTSSBCTTHHHHHHHC
T ss_pred CCEEEEecCccCcHHHHHHHHHHHhC-CCeEEEEecc--------ccccCCcCCCcHHHHHHh
Confidence 58999999999998888877664442 2333331111 12 223666666666655
No 138
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=49.83 E-value=12 Score=32.77 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=7.5
Q ss_pred eEEEEeccCCCCH
Q psy1686 177 GVLFIDEVHMLDI 189 (448)
Q Consensus 177 ~VLfIDEVH~L~~ 189 (448)
.+++|||+|++..
T Consensus 164 ~~iIiDEah~~~~ 176 (216)
T 3b6e_A 164 SLIIIDECHHTNK 176 (216)
T ss_dssp SEEEETTC-----
T ss_pred cEEEEECchhhcc
Confidence 7899999999954
No 139
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=49.49 E-value=48 Score=24.94 Aligned_cols=65 Identities=20% Similarity=0.275 Sum_probs=40.4
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhh---cCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALES---EMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQA 252 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe---~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~ 252 (448)
+.++++|- ++-+.+.+.++.+..+. +..|+++++... ... ..+...+.-+-.+|++.+++..
T Consensus 46 ~dlii~d~-~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~------------~~~--~~~~~g~~~~l~kp~~~~~l~~ 110 (119)
T 2j48_A 46 PIVILMAW-PPPDQSCLLLLQHLREHQADPHPPLVLFLGEP------------PVD--PLLTAQASAILSKPLDPQLLLT 110 (119)
T ss_dssp CSEEEEEC-STTCCTHHHHHHHHHHTCCCSSCCCEEEESSC------------CSS--HHHHHHCSEECSSCSTTHHHHH
T ss_pred CCEEEEec-CCCCCCHHHHHHHHHhccccCCCCEEEEeCCC------------Cch--hhhhcCHHHhccCCCCHHHHHH
Confidence 58899984 44455566666666555 345666554433 111 4444555556678999999988
Q ss_pred HHH
Q psy1686 253 ILK 255 (448)
Q Consensus 253 IL~ 255 (448)
.++
T Consensus 111 ~l~ 113 (119)
T 2j48_A 111 TLQ 113 (119)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
No 140
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=48.71 E-value=31 Score=27.74 Aligned_cols=67 Identities=13% Similarity=0.213 Sum_probs=40.0
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILK 255 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~ 255 (448)
+.++++| +++-+.+.+.++.+..+.++.+.+|+.|.. .......+...+.-|-.+|++.+++...++
T Consensus 56 ~dlvi~d-~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~------------~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~ 122 (143)
T 2qv0_A 56 VDAIFLD-INIPSLDGVLLAQNISQFAHKPFIVFITAW------------KEHAVEAFELEAFDYILKPYQESRIINMLQ 122 (143)
T ss_dssp CSEEEEC-SSCSSSCHHHHHHHHTTSTTCCEEEEEESC------------CTTHHHHHHTTCSEEEESSCCHHHHHHHHH
T ss_pred CCEEEEe-cCCCCCCHHHHHHHHHccCCCceEEEEeCC------------HHHHHHHHhCCcceEEeCCCCHHHHHHHHH
Confidence 6889988 445455667777666665555544433332 111223333334445568999999988876
No 141
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=47.77 E-value=1.5e+02 Score=27.02 Aligned_cols=47 Identities=11% Similarity=0.261 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
|+.||...|.+.+. -+...+-..|...|...+++.|+.+||..++.-
T Consensus 34 ISkDA~~al~ec~~----eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~ 80 (179)
T 1jfi_B 34 VANDARELVVNCCT----EFIHLISSEANEICNKSEKKTISPEHVIQALES 80 (179)
T ss_dssp BCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence 99999999988872 355555556677777778889999999999973
No 142
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=47.71 E-value=6.6 Score=36.88 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=17.6
Q ss_pred eEEEEeccCCCCHHHHHHHHHhh
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRAL 199 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~l 199 (448)
++++|||+|++....+..+++.+
T Consensus 227 ~~vIiDEaH~~~~~~~~~il~~~ 249 (282)
T 1rif_A 227 GMMMNDECHLATGKSISSIISGL 249 (282)
T ss_dssp EEEEEETGGGCCHHHHHHHTTTC
T ss_pred CEEEEECCccCCcccHHHHHHHh
Confidence 89999999999877655554443
No 143
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=47.70 E-value=16 Score=36.99 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=16.0
Q ss_pred eEEEEeccCCCCH---HHHHHHHHhh
Q psy1686 177 GVLFIDEVHMLDI---ECFSFLNRAL 199 (448)
Q Consensus 177 ~VLfIDEVH~L~~---~~f~~Llk~l 199 (448)
++++|||+|+++. .+...|....
T Consensus 95 ~~vViDEaH~~~~~~~~~~~~l~~~~ 120 (431)
T 2v6i_A 95 NLYIMDEAHFLDPASVAARGYIETRV 120 (431)
T ss_dssp SEEEEESTTCCSHHHHHHHHHHHHHH
T ss_pred CEEEEeCCccCCccHHHHHHHHHHHh
Confidence 8999999999974 3444444443
No 144
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=47.25 E-value=80 Score=27.28 Aligned_cols=68 Identities=10% Similarity=0.195 Sum_probs=40.3
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILK 255 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~ 255 (448)
|.++++| +++-+.+.++++...-+..+.|+++++..... ......+-.-+.-|-.+|++.+++...++
T Consensus 59 ~dlvi~D-~~~p~~~g~~~~~~l~~~~~~pii~lt~~~~~-----------~~~~~~~~~ga~~~l~KP~~~~~L~~~i~ 126 (205)
T 1s8n_A 59 PDLVIMD-VKMPRRDGIDAASEIASKRIAPIVVLTAFSQR-----------DLVERARDAGAMAYLVKPFSISDLIPAIE 126 (205)
T ss_dssp CSEEEEE-SSCSSSCHHHHHHHHHHTTCSCEEEEEEGGGH-----------HHHHTTGGGSCEEEEEESCCHHHHHHHHH
T ss_pred CCEEEEe-CCCCCCChHHHHHHHHhcCCCCEEEEecCCCH-----------HHHHHHHhcCCcEEEeCCCCHHHHHHHHH
Confidence 6889988 55555566777766666666677666554311 00111111222234558999999988776
No 145
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=46.76 E-value=53 Score=25.79 Aligned_cols=65 Identities=22% Similarity=0.211 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHhc----CCH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 246 QDEEIQAILKIRL----MQT-DGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 246 s~~eI~~IL~~Ra----i~d-eal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
+.++-.+||+... +++ --++.|++.+.+-+.-+--++...|+..|..+....|+.+|+..++...
T Consensus 12 d~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 12 NEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp CHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4444555655433 332 2377888888334888888888888887776667789999999888643
No 146
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=45.75 E-value=94 Score=27.31 Aligned_cols=46 Identities=17% Similarity=0.309 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++..|+++. -+++.++..-+..+|.-.|++.|+.+||.-+..
T Consensus 40 vS~~ai~aL~El~----~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~R 85 (140)
T 3vh5_A 40 FSKQTVAAISEIT----FRQAENFARDLEMFARHAKRSTITSEDVKLLAR 85 (140)
T ss_dssp ECHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred cCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 9999999999987 578888888888888766888999999986654
No 147
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=44.24 E-value=60 Score=26.03 Aligned_cols=69 Identities=10% Similarity=0.094 Sum_probs=40.4
Q ss_pred cCeEEEEeccCCCC-HHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHH
Q psy1686 175 VPGVLFIDEVHMLD-IECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAI 253 (448)
Q Consensus 175 ~~~VLfIDEVH~L~-~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~I 253 (448)
.+.++|+|- ++-+ .+.+.++...-+.+..|+++++.... ...+...+..-+.-|-.+|++.+++...
T Consensus 50 ~~dlvi~D~-~l~~~~~g~~~~~~l~~~~~~~ii~ls~~~~-----------~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 117 (140)
T 3h5i_A 50 YPDLILMDI-ELGEGMDGVQTALAIQQISELPVVFLTAHTE-----------PAVVEKIRSVTAYGYVMKSATEQVLITI 117 (140)
T ss_dssp CCSEEEEES-SCSSSCCHHHHHHHHHHHCCCCEEEEESSSS-----------CCCCGGGGGSCEEEEEETTCCHHHHHHH
T ss_pred CCCEEEEec-cCCCCCCHHHHHHHHHhCCCCCEEEEECCCC-----------HHHHHHHHhCCCcEEEeCCCCHHHHHHH
Confidence 368999983 3422 45566555555555567666555441 1112233333344456699999999888
Q ss_pred HH
Q psy1686 254 LK 255 (448)
Q Consensus 254 L~ 255 (448)
++
T Consensus 118 i~ 119 (140)
T 3h5i_A 118 VE 119 (140)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 148
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=43.73 E-value=39 Score=25.84 Aligned_cols=65 Identities=11% Similarity=0.093 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHhc----CCHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 246 QDEEIQAILKIRL----MQTD-GLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 246 s~~eI~~IL~~Ra----i~de-al~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
+.++-.+||+... ++++ -++.|++.+.+-+.-+--++...|...|-.++...|+.+|+..++...
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~ 71 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTV 71 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 4455566666433 3322 367788887333888888888888877766666789999999988754
No 149
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=42.31 E-value=59 Score=25.39 Aligned_cols=67 Identities=13% Similarity=0.203 Sum_probs=40.5
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhc---CCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESE---MSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQA 252 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~---~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~ 252 (448)
+.++|+| +++-+.+.++++.+.-+.+ ..|+++++... .......+...+.-|-.+|++.+++.+
T Consensus 48 ~dlii~D-~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~------------~~~~~~~~~~g~~~~l~KP~~~~~L~~ 114 (127)
T 3i42_A 48 YDAVFID-LNLPDTSGLALVKQLRALPMEKTSKFVAVSGFA------------KNDLGKEACELFDFYLEKPIDIASLEP 114 (127)
T ss_dssp CSEEEEE-SBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-------------CTTCCHHHHHHCSEEEESSCCHHHHHH
T ss_pred CCEEEEe-CCCCCCCHHHHHHHHHhhhccCCCCEEEEECCc------------chhHHHHHHHhhHHheeCCCCHHHHHH
Confidence 6899998 4555666777776666652 23444444332 111134444444456679999999988
Q ss_pred HHH
Q psy1686 253 ILK 255 (448)
Q Consensus 253 IL~ 255 (448)
.+.
T Consensus 115 ~i~ 117 (127)
T 3i42_A 115 ILQ 117 (127)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
No 150
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=41.19 E-value=48 Score=26.49 Aligned_cols=68 Identities=12% Similarity=0.241 Sum_probs=35.8
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhc---CCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESE---MSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQA 252 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~---~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~ 252 (448)
+.++|+| +++-+.+.+.++.+..+.. ..|+++++.... ...+...+...+.-|-.+|++.+++..
T Consensus 47 ~dlvi~D-~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~-----------~~~~~~~~~~g~~~~l~KP~~~~~l~~ 114 (140)
T 3n53_A 47 PDLVILD-MDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEH-----------KEAIVNGLHSGADDYLTKPFNRNDLLS 114 (140)
T ss_dssp CSEEEEE-TTC------CHHHHHHTSTTCTTCCEEEEECC---------------CTTTTTTCCCSEEEESSCCHHHHHH
T ss_pred CCEEEEe-CCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCC-----------HHHHHHHHhcCCCeeeeCCCCHHHHHH
Confidence 6899998 5555666667666666553 346665554431 111222232333345568999999988
Q ss_pred HHH
Q psy1686 253 ILK 255 (448)
Q Consensus 253 IL~ 255 (448)
.++
T Consensus 115 ~i~ 117 (140)
T 3n53_A 115 RIE 117 (140)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
No 151
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=40.77 E-value=16 Score=38.94 Aligned_cols=26 Identities=38% Similarity=0.452 Sum_probs=22.9
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhh
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALE 200 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lE 200 (448)
..++++|||++|++...++.|++++.
T Consensus 262 ~~d~lIIDEAsml~~~~~~~Ll~~l~ 287 (608)
T 1w36_D 262 HLDVLVVDEASMIDLPMMSRLIDALP 287 (608)
T ss_dssp SCSEEEECSGGGCBHHHHHHHHHTCC
T ss_pred CCCEEEEechhhCCHHHHHHHHHhCC
Confidence 45899999999999999999988874
No 152
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=37.56 E-value=23 Score=32.22 Aligned_cols=12 Identities=33% Similarity=0.617 Sum_probs=10.4
Q ss_pred eEEEEeccCCCC
Q psy1686 177 GVLFIDEVHMLD 188 (448)
Q Consensus 177 ~VLfIDEVH~L~ 188 (448)
++++|||+|+.+
T Consensus 178 ~~lVlDEah~~~ 189 (235)
T 3llm_A 178 SHVIVDEIHERD 189 (235)
T ss_dssp CEEEECCTTSCC
T ss_pred cEEEEECCccCC
Confidence 789999999853
No 153
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=37.15 E-value=65 Score=25.26 Aligned_cols=67 Identities=18% Similarity=0.136 Sum_probs=38.3
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhc---CCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESE---MSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQA 252 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~---~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~ 252 (448)
+.++|+| .++-+.+.++++.+..+.+ ..|+++++...... ....+..-+.-|-.+|++.+++..
T Consensus 48 ~dlvi~d-~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~------------~~~~~~~g~~~~l~KP~~~~~l~~ 114 (133)
T 3nhm_A 48 PDVLISD-VNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRT------------EGPADQPVPDAYLVKPVKPPVLIA 114 (133)
T ss_dssp CSEEEEC-SSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----------------TTSCCCSEEEESSCCHHHHHH
T ss_pred CCEEEEe-CCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHh------------HHHHhhcCCceEEeccCCHHHHHH
Confidence 6899997 5555666777776666643 34566555433111 111222222234558999999988
Q ss_pred HHH
Q psy1686 253 ILK 255 (448)
Q Consensus 253 IL~ 255 (448)
.++
T Consensus 115 ~i~ 117 (133)
T 3nhm_A 115 QLH 117 (133)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 154
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=37.14 E-value=42 Score=26.27 Aligned_cols=69 Identities=14% Similarity=0.205 Sum_probs=41.8
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHH
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAIL 254 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL 254 (448)
.|.++++| +++=+.+.++++.+.-+.+..|+++++..... ......+...+.-|-.+|++.+++...+
T Consensus 46 ~~dlii~D-~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~~~-----------~~~~~~~~~ga~~~l~KP~~~~~l~~~i 113 (120)
T 3f6p_A 46 QPDLILLD-IMLPNKDGVEVCREVRKKYDMPIIMLTAKDSE-----------IDKVIGLEIGADDYVTKPFSTRELLARV 113 (120)
T ss_dssp CCSEEEEE-TTSTTTHHHHHHHHHHTTCCSCEEEEEESSCH-----------HHHHHHHHTTCCEEEEESCCHHHHHHHH
T ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHhcCCCCEEEEECCCCh-----------HHHHHHHhCCcceeEcCCCCHHHHHHHH
Confidence 36889987 56666677777777666666676666554311 0011122222233456899999988776
Q ss_pred H
Q psy1686 255 K 255 (448)
Q Consensus 255 ~ 255 (448)
+
T Consensus 114 ~ 114 (120)
T 3f6p_A 114 K 114 (120)
T ss_dssp H
T ss_pred H
Confidence 5
No 155
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=37.10 E-value=31 Score=26.54 Aligned_cols=68 Identities=18% Similarity=0.316 Sum_probs=38.2
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILK 255 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~ 255 (448)
+.++++| +++-+.+.++++.+..+.+..|+++++..... ......+-..+.-|-.+|++.+++...++
T Consensus 46 ~dlvl~D-~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~-----------~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~ 113 (120)
T 2a9o_A 46 PDIIILD-LMLPEIDGLEVAKTIRKTSSVPILMLSAKDSE-----------FDKVIGLELGADDYVTKPFSNRELQARVK 113 (120)
T ss_dssp CSEEEEC-SSCSSSCHHHHHHHHHHHCCCCEEEEESCCSH-----------HHHHHHHHHTCSEEEESSCCHHHHHHHHH
T ss_pred CCEEEEe-ccCCCCCHHHHHHHHHhCCCCCEEEEecCCch-----------HHHHHHHhCCHhheEeCCCCHHHHHHHHH
Confidence 5888887 45544455665555555555677665544310 00111222222334568999999988776
No 156
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=36.97 E-value=73 Score=25.06 Aligned_cols=68 Identities=16% Similarity=0.284 Sum_probs=38.8
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhc-CCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESE-MSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAIL 254 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~-~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL 254 (448)
+.++++| +++-+.+.+.++.+..+.. ..|+++++.... .......+-..+.-|-.+|++.+++...+
T Consensus 48 ~dlvl~D-~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~-----------~~~~~~~~~~g~~~~l~KP~~~~~l~~~i 115 (136)
T 1mvo_A 48 PDLIVLD-VMLPKLDGIEVCKQLRQQKLMFPILMLTAKDE-----------EFDKVLGLELGADDYMTKPFSPREVNARV 115 (136)
T ss_dssp CSEEEEE-SSCSSSCHHHHHHHHHHTTCCCCEEEEECTTC-----------CCCHHHHHHTTCCEEEESSCCHHHHHHHH
T ss_pred CCEEEEe-cCCCCCCHHHHHHHHHcCCCCCCEEEEECCCC-----------HHHHHHHHhCCCCEEEECCCCHHHHHHHH
Confidence 6889987 4554445566665555543 346665554431 11122233333334556899999998877
Q ss_pred H
Q psy1686 255 K 255 (448)
Q Consensus 255 ~ 255 (448)
+
T Consensus 116 ~ 116 (136)
T 1mvo_A 116 K 116 (136)
T ss_dssp H
T ss_pred H
Confidence 6
No 157
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=36.62 E-value=16 Score=37.07 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=17.6
Q ss_pred eEEEEeccCCCCHHHHHHHHHhh
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRAL 199 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~l 199 (448)
++++|||+|++....+..+++.+
T Consensus 227 ~liIiDE~H~~~~~~~~~il~~~ 249 (510)
T 2oca_A 227 GMMMNDECHLATGKSISSIISGL 249 (510)
T ss_dssp EEEEEETGGGCCHHHHHHHGGGC
T ss_pred CEEEEECCcCCCcccHHHHHHhc
Confidence 89999999999876655554444
No 158
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=36.35 E-value=1e+02 Score=24.72 Aligned_cols=68 Identities=21% Similarity=0.286 Sum_probs=36.8
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCC-CeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMS-PVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAIL 254 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~-pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL 254 (448)
+.++|+| +++-+.+.++++.+..+..+. |+++++.... .......+...+.-|-.+|++.+++...+
T Consensus 50 ~dlvllD-~~lp~~~g~~l~~~l~~~~~~~~ii~ls~~~~-----------~~~~~~~~~~ga~~~l~KP~~~~~L~~~i 117 (141)
T 3cu5_A 50 PNVLLTD-VRMPRMDGIELVDNILKLYPDCSVIFMSGYSD-----------KEYLKAAIKFRAIRYVEKPIDPSEIMDAL 117 (141)
T ss_dssp CSEEEEE-SCCSSSCHHHHHHHHHHHCTTCEEEEECCSTT-----------TCCC------CCCEEECSSCCHHHHHHHH
T ss_pred CCEEEEe-CCCCCCCHHHHHHHHHhhCCCCcEEEEeCCCc-----------HHHHHHHHhCCccEEEeCCCCHHHHHHHH
Confidence 6899988 455455566666665554443 4444433221 11122333333444556999999998877
Q ss_pred H
Q psy1686 255 K 255 (448)
Q Consensus 255 ~ 255 (448)
+
T Consensus 118 ~ 118 (141)
T 3cu5_A 118 K 118 (141)
T ss_dssp H
T ss_pred H
Confidence 6
No 159
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=36.28 E-value=1.2e+02 Score=25.62 Aligned_cols=60 Identities=10% Similarity=0.108 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 245 YQDEEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 245 ys~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+....+..+|+... ++++|-.+|+..- + -.+-++|+.|...|...+...|+.+||+.+..
T Consensus 23 fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvL-E---yL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 23 FPVGRMLRYIKKGHPKYRIGVGAPVYMAAVL-E---YLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp SCHHHHHHHHHHHSSSCEECTHHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CChHHHHHHHHcCccccccccchHHHHHHHH-H---HHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 35567888888542 8888887777764 1 25668899998888766778999999998876
No 160
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=34.82 E-value=1.3e+02 Score=25.93 Aligned_cols=60 Identities=12% Similarity=0.178 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 245 YQDEEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 245 ys~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+...-+..+|+... ++.+|-.+|+..- + -.+-.+|+.|...|...+...|+.+||+-+..
T Consensus 26 fPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvL-E---yL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 26 FPVGRVHRLLRKGNYAERVGAGAPVYLAAVL-E---YLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp SCHHHHHHHHHHTTSSSEECTHHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccHHHHHHHHHccccccccchhhHHHHHHHH-H---HHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 45567888888532 8888888887765 1 25668899998888766788999999998875
No 161
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=34.52 E-value=15 Score=34.46 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=33.8
Q ss_pred eEEEEeccCCCCHHH-HHHHHHhhhhcC--------------CCeEEEEecCceeEeeccccCCCCCCChhhhhhccccc
Q psy1686 177 GVLFIDEVHMLDIEC-FSFLNRALESEM--------------SPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIP 241 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~-f~~Llk~lEe~~--------------~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~ 241 (448)
+|++|||+..=..+. ..++..+++..+ .|-+|+.||-.+. ++. .-+.|.||+.+|.
T Consensus 105 kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~------~~~---~~~~L~SRi~~f~ 175 (212)
T 1tue_A 105 KVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPA------KDN---RWPYLESRITVFE 175 (212)
T ss_dssp SSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTT------SSS---SCHHHHTSCEEEE
T ss_pred CEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcc------ccc---chhhhhhhEEEEE
Confidence 578999996421111 234555555542 3455567775321 111 2278999999888
Q ss_pred CC
Q psy1686 242 TQ 243 (448)
Q Consensus 242 ~~ 243 (448)
|.
T Consensus 176 F~ 177 (212)
T 1tue_A 176 FP 177 (212)
T ss_dssp CC
T ss_pred cC
Confidence 87
No 162
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=33.75 E-value=1.4e+02 Score=25.36 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 245 YQDEEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 245 ys~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+...-+..+|+... ++.+|-.+|+..- + -.+-.+|+.|...|...+...|+.+||+.+..
T Consensus 24 fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvL-E---yL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 24 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVM-E---YLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp SCHHHHHHHHHHTTSCSEECTHHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccHHHHHHHHHccccccccchhhHHHHHHHH-H---HHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 45567888888532 8888888877765 1 25668899998888766788999999998876
No 163
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=32.75 E-value=24 Score=30.76 Aligned_cols=24 Identities=13% Similarity=0.247 Sum_probs=14.8
Q ss_pred eEEEEeccCCCCH-HHHHHHHHhhh
Q psy1686 177 GVLFIDEVHMLDI-ECFSFLNRALE 200 (448)
Q Consensus 177 ~VLfIDEVH~L~~-~~f~~Llk~lE 200 (448)
.++++||+|++.. .....+.+.+.
T Consensus 148 ~~lViDEah~~~~~~~~~~l~~i~~ 172 (206)
T 1vec_A 148 QMIVLDEADKLLSQDFVQIMEDIIL 172 (206)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHH
T ss_pred CEEEEEChHHhHhhCcHHHHHHHHH
Confidence 7899999997643 33333344443
No 164
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=32.70 E-value=33 Score=26.42 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=38.2
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILK 255 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~ 255 (448)
+.++++| +++-+.+.++++.+..+.+..|+++++.... .......+...+.-|-.+|++.+++...++
T Consensus 46 ~dlvi~D-~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~-----------~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~ 113 (121)
T 1zh2_A 46 PDLIILD-LGLPDGDGIEFIRDLRQWSAVPVIVLSARSE-----------ESDKIAALDAGADDYLSKPFGIGELQARLR 113 (121)
T ss_dssp CSEEEEE-SEETTEEHHHHHHHHHTTCCCCEEEEESCCS-----------HHHHHHHHHHTCSEEEESSCCHHHHHHHHH
T ss_pred CCEEEEe-CCCCCCcHHHHHHHHHhCCCCcEEEEECCCC-----------HHHHHHHHhcCCCeEEeCCcCHHHHHHHHH
Confidence 5888887 4444445566555555444556666554431 001112222333345568999999988776
No 165
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=32.69 E-value=1.1e+02 Score=24.30 Aligned_cols=68 Identities=19% Similarity=0.359 Sum_probs=38.9
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhc---CCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESE---MSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQA 252 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~---~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~ 252 (448)
+.++++|- ++-+.+.+.++....+.+ ..|+++++.... .......+...+.-|-.+|++.+++..
T Consensus 52 ~dlii~d~-~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~-----------~~~~~~~~~~g~~~~l~kp~~~~~l~~ 119 (142)
T 3cg4_A 52 SGVVLLDI-MMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNA-----------PDAKMIGLQEYVVDYITKPFDNEDLIE 119 (142)
T ss_dssp CEEEEEES-CCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTC-----------CCCSSTTGGGGEEEEEESSCCHHHHHH
T ss_pred CCEEEEeC-CCCCCCHHHHHHHHHhhcccCCCCEEEEECCCC-----------HHHHHHHHhcCccEEEeCCCCHHHHHH
Confidence 68999983 444445566665555522 234554443321 222333444444455568999999988
Q ss_pred HHH
Q psy1686 253 ILK 255 (448)
Q Consensus 253 IL~ 255 (448)
.++
T Consensus 120 ~i~ 122 (142)
T 3cg4_A 120 KTT 122 (142)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 166
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=32.50 E-value=1.2e+02 Score=23.67 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=37.6
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 264 LRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 264 l~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
++.||+.+.+-+.-+--++...|+..|-.++...|+.+|+..++...
T Consensus 25 l~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v 71 (88)
T 3vlf_B 25 WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 71 (88)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 67788887333888888888888887776777789999999999754
No 167
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=32.34 E-value=20 Score=37.31 Aligned_cols=32 Identities=22% Similarity=0.058 Sum_probs=14.3
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeE
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVV 207 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~ 207 (448)
.++++|||+|++.......+.+.++..+...+
T Consensus 303 ~~lvIiDEaH~~~~~~~~~~~~il~~~~~~~~ 334 (590)
T 3h1t_A 303 FDLIIIDECHRGSARDNSNWREILEYFEPAFQ 334 (590)
T ss_dssp CSEEEESCCC---------CHHHHHHSTTSEE
T ss_pred cCEEEEECCccccccchHHHHHHHHhCCcceE
Confidence 37899999999965333344444444333333
No 168
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=32.07 E-value=1.2e+02 Score=26.87 Aligned_cols=60 Identities=12% Similarity=0.178 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 245 YQDEEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 245 ys~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+....|..+|+... ++++|-.||+..- + -.+-.+|+.|...|...+...|+.+||+.+..
T Consensus 45 FPVgrI~R~LK~~~~a~RVs~~A~VyLAAVL-E---YL~aEILelAgn~A~~~krkrItprhI~lAI~ 108 (149)
T 2f8n_K 45 FPVGRVHRLLRKGNYSERVGAGAPVYLAAVL-E---YLTAEILELAGNAARDNKKTRIIPRHLQLAIR 108 (149)
T ss_dssp SCHHHHHHHHHHTTSCSEECTTHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccHHHHHHHHHccccccccCcCcHHHHHHHH-H---HHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh
Confidence 45567888888532 7888877777764 1 25668899998888766788999999998876
No 169
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=31.99 E-value=37 Score=36.94 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=19.3
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhc
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESE 202 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~ 202 (448)
..+++|||+|+++......+.+.++..
T Consensus 319 l~~lVlDEAH~l~~~~~~~l~~Il~~l 345 (666)
T 3o8b_A 319 YDIIICDECHSTDSTTILGIGTVLDQA 345 (666)
T ss_dssp CSEEEETTTTCCSHHHHHHHHHHHHHT
T ss_pred ccEEEEccchhcCccHHHHHHHHHHhh
Confidence 378999999999876654455555443
No 170
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=31.34 E-value=61 Score=26.39 Aligned_cols=59 Identities=12% Similarity=0.237 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 246 QDEEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 246 s~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
...-|+.|++... ++.+|.-++++.. + =+...+++.|...|...+++.|+.+||..+..
T Consensus 13 PvaRIkrimK~~~~~~~vs~~A~v~la~a~-E---~Fi~el~~~A~~~a~~~krktI~~~di~~av~ 75 (98)
T 1jfi_A 13 PPARIKKIMQTDEEIGKVAAAVPVIISRAL-E---LFLESLLKKACQVTQSRNAKTMTTSHLKQCIE 75 (98)
T ss_dssp CHHHHHHHHTTSTTCCCBCTTHHHHHHHHH-H---HHHHHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred ChHHHHHHHHcCccccccchHHHHHHHHHH-H---HHHHHHHHHHHHHHHHcCCCeecHHHHHHHHh
Confidence 3446777877321 8888888888877 2 36677888888888766778999999987664
No 171
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=30.56 E-value=84 Score=28.82 Aligned_cols=44 Identities=25% Similarity=0.304 Sum_probs=27.5
Q ss_pred CeEEEEecc------CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhc
Q psy1686 176 PGVLFIDEV------HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRM 237 (448)
Q Consensus 176 ~~VLfIDEV------H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~ 237 (448)
+++|++||+ .+++.+- +...+.+-|.. .+|+..+. -|+.|+.+.
T Consensus 121 yDlvILDEi~~al~~g~l~~~e---v~~~l~~Rp~~~~vIlTGr~---------------ap~~l~e~A 171 (196)
T 1g5t_A 121 LDMVVLDELTYMVAYDYLPLEE---VISALNARPGHQTVIITGRG---------------CHRDILDLA 171 (196)
T ss_dssp CSEEEEETHHHHHHTTSSCHHH---HHHHHHTSCTTCEEEEECSS---------------CCHHHHHHC
T ss_pred CCEEEEeCCCccccCCCCCHHH---HHHHHHhCcCCCEEEEECCC---------------CcHHHHHhC
Confidence 599999999 5565443 45555555544 44444443 467777765
No 172
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=30.13 E-value=44 Score=25.85 Aligned_cols=68 Identities=12% Similarity=0.123 Sum_probs=37.4
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILK 255 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~ 255 (448)
+.++++| +++-+.+.++++.+..+.+..|+++++.... .......+-..+.-|-.+|++.+++...++
T Consensus 47 ~dlvi~d-~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~-----------~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~ 114 (122)
T 1zgz_A 47 VDLILLD-INLPDENGLMLTRALRERSTVGIILVTGRSD-----------RIDRIVGLEMGADDYVTKPLELRELVVRVK 114 (122)
T ss_dssp CSEEEEE-SCCSSSCHHHHHHHHHTTCCCEEEEEESSCC-----------HHHHHHHHHHTCSEEEESSCCHHHHHHHHH
T ss_pred CCEEEEe-CCCCCCChHHHHHHHHhcCCCCEEEEECCCC-----------hhhHHHHHHhCHHHHccCCCCHHHHHHHHH
Confidence 6888887 4554555566665555544445555443321 001112222223345568999999887776
No 173
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=29.47 E-value=33 Score=30.34 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=10.5
Q ss_pred eEEEEeccCCCC
Q psy1686 177 GVLFIDEVHMLD 188 (448)
Q Consensus 177 ~VLfIDEVH~L~ 188 (448)
++++|||+|++.
T Consensus 160 ~~lViDEah~~~ 171 (220)
T 1t6n_A 160 KHFILDECDKML 171 (220)
T ss_dssp CEEEEESHHHHH
T ss_pred CEEEEcCHHHHh
Confidence 789999999873
No 174
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=29.40 E-value=44 Score=27.27 Aligned_cols=69 Identities=12% Similarity=0.183 Sum_probs=40.0
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhc---CCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHH
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESE---MSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQ 251 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~---~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~ 251 (448)
.+.++++| +++-+.+.++++.+..+.+ ..|++++++.... ..+...+...+.-|-.+|++.+++.
T Consensus 61 ~~dlillD-~~lp~~~g~~l~~~l~~~~~~~~~piiils~~~~~-----------~~~~~~~~~ga~~~l~KP~~~~~L~ 128 (149)
T 1i3c_A 61 RPNLILLD-LNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNE-----------DDVIASYELHVNCYLTKSRNLKDLF 128 (149)
T ss_dssp CCSEEEEC-SCCSSSCHHHHHHHHHHCTTTTTSCEEEEESCCCH-----------HHHHHHHHTTCSEEEECCSSHHHHH
T ss_pred CCCEEEEe-CCCCCCcHHHHHHHHHhCcCcCCCeEEEEECCCCh-----------HHHHHHHHcCCcEEEECCCCHHHHH
Confidence 36888887 5665556666666655543 3466665544310 0111222222334556899999998
Q ss_pred HHHH
Q psy1686 252 AILK 255 (448)
Q Consensus 252 ~IL~ 255 (448)
..++
T Consensus 129 ~~i~ 132 (149)
T 1i3c_A 129 KMVQ 132 (149)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8776
No 175
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=29.31 E-value=58 Score=29.11 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=20.6
Q ss_pred cCeEEEEeccCCC---CHHHHHHHHHhhhhc
Q psy1686 175 VPGVLFIDEVHML---DIECFSFLNRALESE 202 (448)
Q Consensus 175 ~~~VLfIDEVH~L---~~~~f~~Llk~lEe~ 202 (448)
.+.||+|||+-.+ +......|.++++++
T Consensus 105 ~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~ 135 (189)
T 2i3b_A 105 GQRVCVIDEIGKMELFSQLFIQAVRQTLSTP 135 (189)
T ss_dssp CCCCEEECCCSTTTTTCSHHHHHHHHHHHCS
T ss_pred CCCEEEEeCCCccccccHHHHHHHHHHHhCC
Confidence 3689999996554 566777777787753
No 176
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=28.75 E-value=49 Score=26.01 Aligned_cols=69 Identities=17% Similarity=0.334 Sum_probs=40.3
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhc---CCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHH
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESE---MSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQ 251 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~---~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~ 251 (448)
.|.++++| ++|=+.+-++++.+..+.+ ..|+++++..... ...-.++-.-+.-|-.+|++.+++.
T Consensus 46 ~~dlvllD-~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~-----------~~~~~~~~~Ga~~~l~KP~~~~~L~ 113 (122)
T 3gl9_A 46 TPDLIVLX-IMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGE-----------EDESLALSLGARKVMRKPFSPSQFI 113 (122)
T ss_dssp CCSEEEEC-SCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCCSH-----------HHHHHHHHTTCSEEEESSCCHHHHH
T ss_pred CCCEEEEe-ccCCCCcHHHHHHHHHhcccccCCCEEEEecCCch-----------HHHHHHHhcChhhhccCCCCHHHHH
Confidence 36889987 6776767777776665543 3466655543310 0011122222234556999999998
Q ss_pred HHHH
Q psy1686 252 AILK 255 (448)
Q Consensus 252 ~IL~ 255 (448)
..++
T Consensus 114 ~~i~ 117 (122)
T 3gl9_A 114 EEVK 117 (122)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8776
No 177
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=28.65 E-value=50 Score=26.11 Aligned_cols=68 Identities=13% Similarity=0.278 Sum_probs=39.8
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhc---CCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESE---MSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQA 252 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~---~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~ 252 (448)
+.++++| ++|-+.+-++++.+..+.. ..|+++++.... ...+..++...+.-|-.+|++.+++..
T Consensus 52 ~dlvi~D-~~~p~~~g~~~~~~lr~~~~~~~~pii~~s~~~~-----------~~~~~~~~~~g~~~~l~KP~~~~~L~~ 119 (129)
T 3h1g_A 52 TKVLITD-WNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEGG-----------KAEVITALKAGVNNYIVKPFTPQVLKE 119 (129)
T ss_dssp CCEEEEC-SCCSSSCHHHHHHHHHTSTTCTTCCEEEEESCCS-----------HHHHHHHHHHTCCEEEESCCCHHHHHH
T ss_pred CCEEEEe-CCCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCCC-----------hHHHHHHHHcCccEEEeCCCCHHHHHH
Confidence 5788876 6776667777776666543 345665544331 001112222223345569999999988
Q ss_pred HHH
Q psy1686 253 ILK 255 (448)
Q Consensus 253 IL~ 255 (448)
.++
T Consensus 120 ~l~ 122 (129)
T 3h1g_A 120 KLE 122 (129)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 178
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=28.09 E-value=49 Score=25.97 Aligned_cols=69 Identities=14% Similarity=0.136 Sum_probs=39.5
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhc---CCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHH
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESE---MSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQ 251 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~---~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~ 251 (448)
.+.++|+| +++-+.+.++++.+..+.+ ..|+++++.... ...+...+..-+.-|-.+|++.+++.
T Consensus 55 ~~dlvi~d-~~~~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~-----------~~~~~~~~~~g~~~~l~kP~~~~~l~ 122 (140)
T 1k68_A 55 RPDLILLX-LNLPKKDGREVLAEIKSDPTLKRIPVVVLSTSIN-----------EDDIFHSYDLHVNCYITKSANLSQLF 122 (140)
T ss_dssp CCSEEEEC-SSCSSSCHHHHHHHHHHSTTGGGSCEEEEESCCC-----------HHHHHHHHHTTCSEEEECCSSHHHHH
T ss_pred CCcEEEEe-cCCCcccHHHHHHHHHcCcccccccEEEEecCCc-----------HHHHHHHHHhchhheecCCCCHHHHH
Confidence 46899998 4454556666666666553 456666554431 00111222222334456899999998
Q ss_pred HHHH
Q psy1686 252 AILK 255 (448)
Q Consensus 252 ~IL~ 255 (448)
..++
T Consensus 123 ~~i~ 126 (140)
T 1k68_A 123 QIVK 126 (140)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8776
No 179
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=27.74 E-value=25 Score=34.00 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=15.2
Q ss_pred eEEEEeccCCCCHHHHHHHHHhh
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRAL 199 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~l 199 (448)
+++++||+|++....+....+.+
T Consensus 165 ~~vIiDEaH~~~~~~~~~~~~~i 187 (400)
T 1s2m_A 165 SLFIMDEADKMLSRDFKTIIEQI 187 (400)
T ss_dssp CEEEEESHHHHSSHHHHHHHHHH
T ss_pred CEEEEeCchHhhhhchHHHHHHH
Confidence 78999999977554444433333
No 180
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=27.59 E-value=1.2e+02 Score=26.15 Aligned_cols=60 Identities=15% Similarity=0.207 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 245 YQDEEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 245 ys~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+...-|..+|+... ++.+|-.+|+..- + -.+-.+|+.|...|...+...|+.+||+.+..
T Consensus 26 fPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvL-E---yL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 26 FPVGRVHRLLRRGNYAQRIGSGAPVYLTAVL-E---YLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp SCHHHHHHHHHTTCSCSEECSSHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cCHHHHHHHHHccccccccchhhHHHHHHHH-H---HHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 34567888888432 7777777776664 1 24567899998888766788999999998876
No 181
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=27.43 E-value=50 Score=26.34 Aligned_cols=69 Identities=20% Similarity=0.334 Sum_probs=39.8
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhc---CCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHH
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESE---MSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQ 251 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~---~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~ 251 (448)
.+.++|+| +++-+.+.+.++.+..+.+ ..|+++++.... .......+-..+.-|-.+|++.+++.
T Consensus 62 ~~dlvi~D-~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~-----------~~~~~~~~~~g~~~~l~kP~~~~~l~ 129 (149)
T 1k66_A 62 RPAVILLD-LNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSN-----------PKDIEICYSYSISSYIVKPLEIDRLT 129 (149)
T ss_dssp CCSEEEEC-SCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCC-----------HHHHHHHHHTTCSEEEECCSSHHHHH
T ss_pred CCcEEEEE-CCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCCC-----------HHHHHHHHHCCCCEEEeCCCCHHHHH
Confidence 46899998 4454556667666666653 356666554431 01111222222334556899999998
Q ss_pred HHHH
Q psy1686 252 AILK 255 (448)
Q Consensus 252 ~IL~ 255 (448)
..++
T Consensus 130 ~~i~ 133 (149)
T 1k66_A 130 ETVQ 133 (149)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8776
No 182
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=26.89 E-value=51 Score=26.10 Aligned_cols=68 Identities=9% Similarity=0.154 Sum_probs=37.9
Q ss_pred CeEEEEeccCCC-CHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHH
Q psy1686 176 PGVLFIDEVHML-DIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAIL 254 (448)
Q Consensus 176 ~~VLfIDEVH~L-~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL 254 (448)
+.++++|- ++- +.+.+.++.+..+.+..|+++++..... ..+...+...+.-|-.+|++.+++...+
T Consensus 55 ~dlii~d~-~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~-----------~~~~~~~~~g~~~~l~kp~~~~~l~~~i 122 (140)
T 3cg0_A 55 PDIALVDI-MLCGALDGVETAARLAAGCNLPIIFITSSQDV-----------ETFQRAKRVNPFGYLAKPVAADTLHRSI 122 (140)
T ss_dssp CSEEEEES-SCCSSSCHHHHHHHHHHHSCCCEEEEECCCCH-----------HHHHHHHTTCCSEEEEESCCHHHHHHHH
T ss_pred CCEEEEec-CCCCCCCHHHHHHHHHhCCCCCEEEEecCCCH-----------HHHHHHHhcCCCEEEeCCCCHHHHHHHH
Confidence 68999983 333 3455565555555555666665544310 0011222222334455899999998877
Q ss_pred H
Q psy1686 255 K 255 (448)
Q Consensus 255 ~ 255 (448)
+
T Consensus 123 ~ 123 (140)
T 3cg0_A 123 E 123 (140)
T ss_dssp H
T ss_pred H
Confidence 6
No 183
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=26.78 E-value=32 Score=32.33 Aligned_cols=41 Identities=7% Similarity=0.166 Sum_probs=27.8
Q ss_pred CCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch
Q psy1686 33 SLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV 82 (448)
Q Consensus 33 ~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt 82 (448)
.-.|....+.|+|.+..... |.+ +.. |.+.++|++..|||+
T Consensus 5 ~~~~~~~~~~~~gR~~el~~---L~~-l~~-----~~v~i~G~~G~GKT~ 45 (357)
T 2fna_A 5 DTSPKDNRKDFFDREKEIEK---LKG-LRA-----PITLVLGLRRTGKSS 45 (357)
T ss_dssp CSSCCCSGGGSCCCHHHHHH---HHH-TCS-----SEEEEEESTTSSHHH
T ss_pred CCCCCCCHHHhcChHHHHHH---HHH-hcC-----CcEEEECCCCCCHHH
Confidence 34455556889999887543 455 543 568899988448876
No 184
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=26.71 E-value=51 Score=31.88 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=16.4
Q ss_pred CeEEEEeccCCCCH-HHHHHHHHhhh
Q psy1686 176 PGVLFIDEVHMLDI-ECFSFLNRALE 200 (448)
Q Consensus 176 ~~VLfIDEVH~L~~-~~f~~Llk~lE 200 (448)
.+++++||+|++.. ..+..+.+.+.
T Consensus 126 ~~~vIiDEaH~~~~~~~~~~~~~~~~ 151 (494)
T 1wp9_A 126 VSLIVFDEAHRAVGNYAYVFIAREYK 151 (494)
T ss_dssp CSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred ceEEEEECCcccCCCCcHHHHHHHHH
Confidence 47899999999953 24444444443
No 185
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=26.02 E-value=72 Score=33.04 Aligned_cols=25 Identities=40% Similarity=0.462 Sum_probs=22.4
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhh
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALE 200 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lE 200 (448)
..+++|||+-|++...+++|+.+..
T Consensus 235 ~d~liiDE~sm~~~~~l~~l~~~~~ 259 (446)
T 3vkw_A 235 FKRLFIDEGLMLHTGCVNFLVEMSL 259 (446)
T ss_dssp CSEEEEETGGGSCHHHHHHHHHHTT
T ss_pred CCEEEEeCcccCCHHHHHHHHHhCC
Confidence 4899999999999999999988765
No 186
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=26.01 E-value=34 Score=34.27 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=17.5
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhh
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRAL 199 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~l 199 (448)
.++++|||+|++....+..+.+.+
T Consensus 193 ~~liIvDEaH~~~~~~~~~~~~~~ 216 (472)
T 2fwr_A 193 FMLLIFDEVHHLPAESYVQIAQMS 216 (472)
T ss_dssp CSEEEEETGGGTTSTTTHHHHHTC
T ss_pred CCEEEEECCcCCCChHHHHHHHhc
Confidence 389999999999766655544443
No 187
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=25.68 E-value=85 Score=24.45 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=38.7
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhcC-CCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHH
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESEM-SPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAI 253 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~~-~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~I 253 (448)
.+.++++| +++-+.+.++++.+..+..+ .|+++++.... .......+-..+.-|-.+|++.+++...
T Consensus 47 ~~dlvi~D-~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~-----------~~~~~~~~~~ga~~~l~Kp~~~~~l~~~ 114 (126)
T 1dbw_A 47 RNGVLVTD-LRMPDMSGVELLRNLGDLKINIPSIVITGHGD-----------VPMAVEAMKAGAVDFIEKPFEDTVIIEA 114 (126)
T ss_dssp CSEEEEEE-CCSTTSCHHHHHHHHHHTTCCCCEEEEECTTC-----------HHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CCCEEEEE-CCCCCCCHHHHHHHHHhcCCCCCEEEEECCCC-----------HHHHHHHHHhCHHHheeCCCCHHHHHHH
Confidence 36899998 45545555666655555433 45655544331 0111122222333455689999999887
Q ss_pred HH
Q psy1686 254 LK 255 (448)
Q Consensus 254 L~ 255 (448)
++
T Consensus 115 i~ 116 (126)
T 1dbw_A 115 IE 116 (126)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 188
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=25.01 E-value=21 Score=32.18 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=10.0
Q ss_pred eEEEEeccCCC
Q psy1686 177 GVLFIDEVHML 187 (448)
Q Consensus 177 ~VLfIDEVH~L 187 (448)
++++|||+|++
T Consensus 168 ~~lViDEah~~ 178 (230)
T 2oxc_A 168 RLFILDEADKL 178 (230)
T ss_dssp CEEEESSHHHH
T ss_pred CEEEeCCchHh
Confidence 68999999997
No 189
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=24.98 E-value=18 Score=32.47 Aligned_cols=12 Identities=33% Similarity=0.337 Sum_probs=10.5
Q ss_pred eEEEEeccCCCC
Q psy1686 177 GVLFIDEVHMLD 188 (448)
Q Consensus 177 ~VLfIDEVH~L~ 188 (448)
.+++|||+|++.
T Consensus 169 ~~lViDEah~~~ 180 (228)
T 3iuy_A 169 TYLVIDEADKML 180 (228)
T ss_dssp CEEEECCHHHHH
T ss_pred eEEEEECHHHHh
Confidence 789999999864
No 190
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=24.78 E-value=55 Score=25.33 Aligned_cols=68 Identities=9% Similarity=0.083 Sum_probs=37.0
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILK 255 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~ 255 (448)
+.++++| +++-+.+.+.++.+..+.+..|+++++.... .......+-..+.-|-.+|++.+++...++
T Consensus 48 ~dlvi~D-~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~-----------~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~ 115 (123)
T 1xhf_A 48 INLVIMD-INLPGKNGLLLARELREQANVALMFLTGRDN-----------EVDKILGLEIGADDYITKPFNPRELTIRAR 115 (123)
T ss_dssp CSEEEEC-SSCSSSCHHHHHHHHHHHCCCEEEEEESCCS-----------HHHHHHHHHHTCSEEEESSCCHHHHHHHHH
T ss_pred CCEEEEc-CCCCCCCHHHHHHHHHhCCCCcEEEEECCCC-----------hHHHHHHHhcCcceEEeCCCCHHHHHHHHH
Confidence 5888886 4554445566665555554445555443321 000112222223345568999999987765
No 191
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=24.42 E-value=1.1e+02 Score=24.78 Aligned_cols=68 Identities=12% Similarity=0.074 Sum_probs=38.5
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCC-CeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMS-PVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAIL 254 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~-pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL 254 (448)
+.++++| +++-+.+.++++....+..+. |+++++.... ...+...+...+.-|-.+|++.+++...|
T Consensus 67 ~dlii~D-~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~-----------~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i 134 (150)
T 4e7p_A 67 VDIAILD-VEMPVKTGLEVLEWIRSEKLETKVVVVTTFKR-----------AGYFERAVKAGVDAYVLKERSIADLMQTL 134 (150)
T ss_dssp CSEEEEC-SSCSSSCHHHHHHHHHHTTCSCEEEEEESCCC-----------HHHHHHHHHTTCSEEEETTSCHHHHHHHH
T ss_pred CCEEEEe-CCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCC-----------HHHHHHHHHCCCcEEEecCCCHHHHHHHH
Confidence 6899988 455555667766666665443 4544443321 00111222222333556899999998887
Q ss_pred H
Q psy1686 255 K 255 (448)
Q Consensus 255 ~ 255 (448)
+
T Consensus 135 ~ 135 (150)
T 4e7p_A 135 H 135 (150)
T ss_dssp H
T ss_pred H
Confidence 6
No 192
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=24.39 E-value=47 Score=31.12 Aligned_cols=41 Identities=7% Similarity=0.121 Sum_probs=28.9
Q ss_pred CccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch
Q psy1686 35 EPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV 82 (448)
Q Consensus 35 ~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt 82 (448)
.|......|+|.+...+. |.+++..| +.+.++|++..|||+
T Consensus 6 ~~~~~~~~~~gR~~el~~---L~~~l~~~----~~v~i~G~~G~GKT~ 46 (350)
T 2qen_A 6 RPKTRREDIFDREEESRK---LEESLENY----PLTLLLGIRRVGKSS 46 (350)
T ss_dssp SCCCSGGGSCSCHHHHHH---HHHHHHHC----SEEEEECCTTSSHHH
T ss_pred CCCCChHhcCChHHHHHH---HHHHHhcC----CeEEEECCCcCCHHH
Confidence 344345789999988654 67777765 458899987448875
No 193
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=23.98 E-value=57 Score=35.33 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=16.3
Q ss_pred eEEEEeccCCCCHH---HHHHHHHhh
Q psy1686 177 GVLFIDEVHMLDIE---CFSFLNRAL 199 (448)
Q Consensus 177 ~VLfIDEVH~L~~~---~f~~Llk~l 199 (448)
++++|||+|+++.. ...++....
T Consensus 334 ~lvViDEaH~~~~~~~~~~~~l~~~~ 359 (673)
T 2wv9_A 334 NLFVMDEAHFTDPASIAARGYIATRV 359 (673)
T ss_dssp SEEEEESTTCCCHHHHHHHHHHHHHH
T ss_pred eEEEEeCCcccCccHHHHHHHHHHhc
Confidence 89999999999653 444454444
No 194
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=23.75 E-value=70 Score=25.96 Aligned_cols=69 Identities=20% Similarity=0.246 Sum_probs=39.8
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhh---cCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHH
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALES---EMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQ 251 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe---~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~ 251 (448)
.+.++|+| +++-+.+.+.++.+.-+. +..|+++++..... ..+...+...+.-|-.+|++.+++.
T Consensus 59 ~~dliilD-~~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~-----------~~~~~~~~~g~~~~l~KP~~~~~l~ 126 (152)
T 3heb_A 59 RAQLVLLD-LNLPDMTGIDILKLVKENPHTRRSPVVILTTTDDQ-----------REIQRCYDLGANVYITKPVNYENFA 126 (152)
T ss_dssp CBEEEEEC-SBCSSSBHHHHHHHHHHSTTTTTSCEEEEESCCCH-----------HHHHHHHHTTCSEEEECCSSHHHHH
T ss_pred CCCEEEEe-CCCCCCcHHHHHHHHHhcccccCCCEEEEecCCCH-----------HHHHHHHHCCCcEEEeCCCCHHHHH
Confidence 47899998 455566667776666653 23456655444310 0011222222334556899999998
Q ss_pred HHHH
Q psy1686 252 AILK 255 (448)
Q Consensus 252 ~IL~ 255 (448)
..|+
T Consensus 127 ~~i~ 130 (152)
T 3heb_A 127 NAIR 130 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8887
No 195
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=23.49 E-value=23 Score=30.88 Aligned_cols=12 Identities=25% Similarity=0.277 Sum_probs=10.4
Q ss_pred eEEEEeccCCCC
Q psy1686 177 GVLFIDEVHMLD 188 (448)
Q Consensus 177 ~VLfIDEVH~L~ 188 (448)
+++++||+|++.
T Consensus 146 ~~iViDEah~~~ 157 (207)
T 2gxq_A 146 EVAVLDEADEML 157 (207)
T ss_dssp SEEEEESHHHHH
T ss_pred eEEEEEChhHhh
Confidence 789999999873
No 196
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=23.45 E-value=2.1e+02 Score=24.43 Aligned_cols=60 Identities=13% Similarity=0.138 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHhc-----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 245 YQDEEIQAILKIRL-----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 245 ys~~eI~~IL~~Ra-----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+....+..+|+... ++.+|--+|+..- + =.+-.+|+.|...|...+...|+.+|++-+..
T Consensus 28 fPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvL-E---yL~aEIlelAgn~A~~~k~krItprhi~lAI~ 92 (128)
T 1f66_C 28 FPVGRIHRHLKSRTTSHGRVGATAAVYSAAIL-E---YLTAEVLELAGNASKDLKVKRITPRHLQLAIR 92 (128)
T ss_dssp SCHHHHHHHHHHTSCSSCEECTTHHHHHHHHH-H---HHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred CChHHHHHHHHHcccchhhccccHHHHHHHHH-H---HHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 45567888887532 6677766666654 1 24567899998888766778999999998875
No 197
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=23.44 E-value=1.3e+02 Score=23.04 Aligned_cols=68 Identities=13% Similarity=0.129 Sum_probs=35.8
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhc---CCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESE---MSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQA 252 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~---~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~ 252 (448)
+.++++| +++-+.+.++++.+..+.+ ..|+++++.... .......+...+.-|-.+|++.+++..
T Consensus 46 ~dlvi~D-~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~-----------~~~~~~~~~~g~~~~l~KP~~~~~l~~ 113 (124)
T 1mb3_A 46 PDLILMD-IQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAM-----------KGDEERIREGGCEAYISKPISVVHFLE 113 (124)
T ss_dssp CSEEEEE-SBCSSSBHHHHHHHHHHSTTTTTSCEEEEC-----------------CHHHHHHHTCSEEECSSCCHHHHHH
T ss_pred CCEEEEe-CCCCCCCHHHHHHHHHcCccccCCcEEEEECCCC-----------HHHHHHHHhCCCCEEEeCCCCHHHHHH
Confidence 6889988 4454555566555555432 345555443321 111112222233345568999999988
Q ss_pred HHH
Q psy1686 253 ILK 255 (448)
Q Consensus 253 IL~ 255 (448)
.++
T Consensus 114 ~i~ 116 (124)
T 1mb3_A 114 TIK 116 (124)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
No 198
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=23.40 E-value=1.1e+02 Score=26.80 Aligned_cols=69 Identities=7% Similarity=-0.036 Sum_probs=41.3
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhh--hcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHH
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALE--SEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQA 252 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lE--e~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~ 252 (448)
.|.++++| ++|-+.+-++++.+.-+ .+..|+++++..... ......+..-+.-|-.+|++.+++..
T Consensus 54 ~~dlvllD-~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~-----------~~~~~~~~~Ga~~~l~Kp~~~~~L~~ 121 (225)
T 3klo_A 54 SIQMLVID-YSRISDDVLTDYSSFKHISCPDAKEVIINCPQDI-----------EHKLLFKWNNLAGVFYIDDDMDTLIK 121 (225)
T ss_dssp GCCEEEEE-GGGCCHHHHHHHHHHHHHHCTTCEEEEEEECTTC-----------CHHHHTTSTTEEEEEETTCCHHHHHH
T ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHhhCCCCcEEEEECCcch-----------hHHHHHHHhCCCEEEecCCCHHHHHH
Confidence 46899988 67777888888777766 334566655544311 10101111112234568999999988
Q ss_pred HHH
Q psy1686 253 ILK 255 (448)
Q Consensus 253 IL~ 255 (448)
.++
T Consensus 122 ~i~ 124 (225)
T 3klo_A 122 GMS 124 (225)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
No 199
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=23.39 E-value=62 Score=32.67 Aligned_cols=14 Identities=29% Similarity=0.510 Sum_probs=12.0
Q ss_pred eEEEEeccCCCCHH
Q psy1686 177 GVLFIDEVHMLDIE 190 (448)
Q Consensus 177 ~VLfIDEVH~L~~~ 190 (448)
++++|||+|+++..
T Consensus 112 ~~iViDEah~~~~~ 125 (451)
T 2jlq_A 112 NLIVMDEAHFTDPC 125 (451)
T ss_dssp SEEEEETTTCCSHH
T ss_pred CEEEEeCCccCCcc
Confidence 89999999999653
No 200
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=23.18 E-value=2.8e+02 Score=21.93 Aligned_cols=68 Identities=13% Similarity=0.164 Sum_probs=40.0
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCC-CeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMS-PVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAIL 254 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~-pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL 254 (448)
+.++++| +++-+.+.++++.+.-+..+. |+++++.... ...+...+...+.-|-.+|++.+++...+
T Consensus 68 ~dlvi~D-~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~-----------~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i 135 (146)
T 4dad_A 68 FDILMID-GAALDTAELAAIEKLSRLHPGLTCLLVTTDAS-----------SQTLLDAMRAGVRDVLRWPLEPRALDDAL 135 (146)
T ss_dssp CSEEEEE-CTTCCHHHHHHHHHHHHHCTTCEEEEEESCCC-----------HHHHHHHHTTTEEEEEESSCCHHHHHHHH
T ss_pred CCEEEEe-CCCCCccHHHHHHHHHHhCCCCcEEEEeCCCC-----------HHHHHHHHHhCCceeEcCCCCHHHHHHHH
Confidence 6888887 567777888887777665543 4444443321 00011122222233556899999998877
Q ss_pred H
Q psy1686 255 K 255 (448)
Q Consensus 255 ~ 255 (448)
+
T Consensus 136 ~ 136 (146)
T 4dad_A 136 K 136 (146)
T ss_dssp H
T ss_pred H
Confidence 6
No 201
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=23.16 E-value=2.2e+02 Score=21.96 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=36.0
Q ss_pred CeEEEEeccCCCC-HHHHHHHHHhhhhcC-CCeEEEEecCceeEeeccccCCCCCCChhhhhhcc---cccCCCCCHHHH
Q psy1686 176 PGVLFIDEVHMLD-IECFSFLNRALESEM-SPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV---IIPTQPYQDEEI 250 (448)
Q Consensus 176 ~~VLfIDEVH~L~-~~~f~~Llk~lEe~~-~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~---ii~~~pys~~eI 250 (448)
+.++++|- ++-+ .+.+.++.+..+..+ .|+++++.... . ....++. -|-.+|++.+++
T Consensus 51 ~dlvi~d~-~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~-----------~-----~~~~~~~~~~~~l~kP~~~~~l 113 (132)
T 2rdm_A 51 IDGVVTDI-RFCQPPDGWQVARVAREIDPNMPIVYISGHAA-----------L-----EWASNGVPDSIILEKPFTSAQL 113 (132)
T ss_dssp CCEEEEES-CCSSSSCHHHHHHHHHHHCTTCCEEEEESSCC-----------T-----THHHHSCTTCEEEESSCCHHHH
T ss_pred CCEEEEee-eCCCCCCHHHHHHHHHhcCCCCCEEEEeCCcc-----------H-----HHHHhhcCCcceEeCCCCHHHH
Confidence 68999983 4443 455666666555543 45655544331 0 1111111 145689999999
Q ss_pred HHHHH
Q psy1686 251 QAILK 255 (448)
Q Consensus 251 ~~IL~ 255 (448)
...++
T Consensus 114 ~~~i~ 118 (132)
T 2rdm_A 114 ITAVS 118 (132)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88876
No 202
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=22.87 E-value=62 Score=25.97 Aligned_cols=68 Identities=15% Similarity=0.136 Sum_probs=38.3
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILK 255 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~ 255 (448)
+.++++| +++-+.+.++++.+..+.+..|+++++..... ......+-..+.-|-.+|++.+++...++
T Consensus 49 ~dlvllD-~~l~~~~g~~l~~~l~~~~~~~ii~ls~~~~~-----------~~~~~~~~~ga~~~l~KP~~~~~L~~~l~ 116 (136)
T 2qzj_A 49 YDLIFLE-IILSDGDGWTLCKKIRNVTTCPIVYMTYINED-----------QSILNALNSGGDDYLIKPLNLEILYAKVK 116 (136)
T ss_dssp CSEEEEE-SEETTEEHHHHHHHHHTTCCCCEEEEESCCCH-----------HHHHHHHHTTCCEEEESSCCHHHHHHHHH
T ss_pred CCEEEEe-CCCCCCCHHHHHHHHccCCCCCEEEEEcCCCH-----------HHHHHHHHcCCcEEEECCCCHHHHHHHHH
Confidence 6889887 44545556666666655544566655443310 01112222223344568999999888776
No 203
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=22.85 E-value=82 Score=25.23 Aligned_cols=68 Identities=15% Similarity=0.191 Sum_probs=38.2
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhh---cCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALES---EMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQA 252 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe---~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~ 252 (448)
+.++|+| +++-+.+.+.++.+..+. +..|+++++.... ...+...+...+.-|-.+|++.+++..
T Consensus 53 ~dlii~d-~~l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~-----------~~~~~~~~~~g~~~~l~kp~~~~~L~~ 120 (147)
T 2zay_A 53 PHLIITE-ANMPKISGMDLFNSLKKNPQTASIPVIALSGRAT-----------AKEEAQLLDMGFIDFIAKPVNAIRLSA 120 (147)
T ss_dssp CSEEEEE-SCCSSSCHHHHHHHHHTSTTTTTSCEEEEESSCC-----------HHHHHHHHHHTCSEEEESSCCHHHHHH
T ss_pred CCEEEEc-CCCCCCCHHHHHHHHHcCcccCCCCEEEEeCCCC-----------HHHHHHHHhCCCCEEEeCCCCHHHHHH
Confidence 6899998 344455667766666652 3345665544331 000112222223345568999999888
Q ss_pred HHH
Q psy1686 253 ILK 255 (448)
Q Consensus 253 IL~ 255 (448)
.|+
T Consensus 121 ~i~ 123 (147)
T 2zay_A 121 RIK 123 (147)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
No 204
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=22.60 E-value=74 Score=26.08 Aligned_cols=69 Identities=17% Similarity=0.250 Sum_probs=39.1
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhh---cCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHH
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALES---EMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQ 251 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe---~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~ 251 (448)
.+.++|+| +++-+.+.++++...-+. +..|+++++.... ...+...+...+.-|-.+|++.+++.
T Consensus 51 ~~dlii~D-~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~-----------~~~~~~~~~~g~~~~l~KP~~~~~l~ 118 (154)
T 3gt7_A 51 RPDLIISD-VLMPEMDGYALCRWLKGQPDLRTIPVILLTILSD-----------PRDVVRSLECGADDFITKPCKDVVLA 118 (154)
T ss_dssp CCSEEEEE-SCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCCS-----------HHHHHHHHHHCCSEEEESSCCHHHHH
T ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHhCCCcCCCCEEEEECCCC-----------hHHHHHHHHCCCCEEEeCCCCHHHHH
Confidence 36889987 455555667766665554 3346665554331 00011222222334556899999998
Q ss_pred HHHH
Q psy1686 252 AILK 255 (448)
Q Consensus 252 ~IL~ 255 (448)
..++
T Consensus 119 ~~i~ 122 (154)
T 3gt7_A 119 SHVK 122 (154)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8776
No 205
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=22.57 E-value=1.3e+02 Score=23.69 Aligned_cols=69 Identities=16% Similarity=0.241 Sum_probs=39.1
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILK 255 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~ 255 (448)
+.++|+| .++-+.+.++++....+..+...+|+.|... + .......+...+.-|-.+|++.+++...++
T Consensus 52 ~dlvi~d-~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~---------~-~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~ 120 (137)
T 3hdg_A 52 PDVIITD-IRMPKLGGLEMLDRIKAGGAKPYVIVISAFS---------E-MKYFIKAIELGVHLFLPKPIEPGRLMETLE 120 (137)
T ss_dssp CSEEEEC-SSCSSSCHHHHHHHHHHTTCCCEEEECCCCC---------C-HHHHHHHHHHCCSEECCSSCCHHHHHHHHH
T ss_pred CCEEEEe-CCCCCCCHHHHHHHHHhcCCCCcEEEEecCc---------C-hHHHHHHHhCCcceeEcCCCCHHHHHHHHH
Confidence 6888887 4555666777777666665544344333320 0 000112222223345668999999988876
No 206
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=22.53 E-value=1.4e+02 Score=23.59 Aligned_cols=68 Identities=16% Similarity=0.259 Sum_probs=38.1
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC-CCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM-SPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAIL 254 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~-~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL 254 (448)
+.++++| +++-+.+.++++.+..+..+ .|+++++.... ...+...+...+.-|-.+|++.+++...+
T Consensus 50 ~dlvilD-~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~-----------~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i 117 (133)
T 3b2n_A 50 PNVVILD-IEMPGMTGLEVLAEIRKKHLNIKVIIVTTFKR-----------PGYFEKAVVNDVDAYVLKERSIEELVETI 117 (133)
T ss_dssp CSEEEEC-SSCSSSCHHHHHHHHHHTTCSCEEEEEESCCC-----------HHHHHHHHHTTCSEEEETTSCHHHHHHHH
T ss_pred CCEEEEe-cCCCCCCHHHHHHHHHHHCCCCcEEEEecCCC-----------HHHHHHHHHcCCcEEEECCCCHHHHHHHH
Confidence 6888887 45555556666655555433 45555443331 01111222233334556899999998887
Q ss_pred H
Q psy1686 255 K 255 (448)
Q Consensus 255 ~ 255 (448)
+
T Consensus 118 ~ 118 (133)
T 3b2n_A 118 N 118 (133)
T ss_dssp H
T ss_pred H
Confidence 6
No 207
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=22.49 E-value=3e+02 Score=24.88 Aligned_cols=60 Identities=20% Similarity=0.243 Sum_probs=39.5
Q ss_pred HHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhcc
Q psy1686 249 EIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLD 312 (448)
Q Consensus 249 eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~D 312 (448)
-|.++|+... ++++|+..+..+. -+....+-..|..++...+...+|..+|+.+..+.+.
T Consensus 8 yi~kvLkqv~p~~~iS~~Am~~m~s~v----~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lp 71 (192)
T 2jss_A 8 YIYKVLKQTHPDTGISQKSMSILNSFV----NDIFERIATEASKLAAYNKKSTISAREIQTAVRLILP 71 (192)
T ss_dssp HHHHHHHHHCSSCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSC
T ss_pred HHHHHHcccCCCCCcCHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcC
Confidence 4778888543 9999999887775 1222223333444444346678999999999987663
No 208
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=22.37 E-value=1.3e+02 Score=22.74 Aligned_cols=66 Identities=8% Similarity=0.070 Sum_probs=36.3
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC-CCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM-SPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAIL 254 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~-~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL 254 (448)
+.++++| +++-+.+.++++.+..+..+ .|+++++...... ...+...+.-|-.+|++.+++...+
T Consensus 46 ~dlvl~D-~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~-------------~~~~~~g~~~~l~Kp~~~~~l~~~i 111 (116)
T 3a10_A 46 YDLVILD-IEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYR-------------SDMSSWAADEYVVKSFNFDELKEKV 111 (116)
T ss_dssp CSEEEEC-SCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGG-------------GCGGGGGSSEEEECCSSTHHHHHHH
T ss_pred CCEEEEE-CCCCCCCHHHHHHHHHccCCCCeEEEEECCcchH-------------HHHHhccccceEECCCCHHHHHHHH
Confidence 6889988 45545555666655555443 4555554432110 0111112223445899999998877
Q ss_pred H
Q psy1686 255 K 255 (448)
Q Consensus 255 ~ 255 (448)
+
T Consensus 112 ~ 112 (116)
T 3a10_A 112 K 112 (116)
T ss_dssp H
T ss_pred H
Confidence 6
No 209
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=22.28 E-value=75 Score=25.32 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=37.4
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhh-c-CCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALES-E-MSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAI 253 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe-~-~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~I 253 (448)
+.++|+| ++|=+.+-+.++.+.-+. . ..|+++++..... ......+-.-+.-|-.+|++.+++...
T Consensus 53 ~dlvllD-~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~-----------~~~~~~~~~ga~~~l~KP~~~~~L~~~ 120 (133)
T 2r25_B 53 YNMIFMD-VQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADD-----------SNIKECLESGMNGFLSKPIKRPKLKTI 120 (133)
T ss_dssp CSEEEEC-SCCSSSCHHHHHHHHHHHSCCCSCEEEEESCCSH-----------HHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CCEEEEe-CCCCCCChHHHHHHHHhhcCCCCCEEEEECCCCH-----------HHHHHHHHcCCCEEEeCCCCHHHHHHH
Confidence 6889887 566555566666555543 2 3455554443310 001112212222345699999999888
Q ss_pred HH
Q psy1686 254 LK 255 (448)
Q Consensus 254 L~ 255 (448)
++
T Consensus 121 l~ 122 (133)
T 2r25_B 121 LT 122 (133)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 210
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=21.94 E-value=1.4e+02 Score=26.51 Aligned_cols=68 Identities=12% Similarity=0.242 Sum_probs=40.8
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILK 255 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~ 255 (448)
|.++++| +++-+.+.++++....+.+..|+++++.... ...+...+..-+.-|-.+|++.+++...++
T Consensus 50 ~dlvilD-~~l~~~~g~~~~~~lr~~~~~~ii~lt~~~~-----------~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~ 117 (238)
T 2gwr_A 50 PDLVLLD-LMLPGMNGIDVCRVLRADSGVPIVMLTAKTD-----------TVDVVLGLESGADDYIMKPFKPKELVARVR 117 (238)
T ss_dssp CSEEEEE-SSCSSSCHHHHHHHHHTTCCCCEEEEEETTC-----------CSCHHHHHHTTCCEEEEESCCHHHHHHHHH
T ss_pred CCEEEEe-CCCCCCCHHHHHHHHHhCCCCcEEEEeCCCC-----------HHHHHHHHHCCCCEEEeCCCCHHHHHHHHH
Confidence 6888888 4554555666666665555567666555431 111223333333445568999999888776
No 211
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=21.92 E-value=1e+02 Score=23.77 Aligned_cols=68 Identities=16% Similarity=0.227 Sum_probs=37.0
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC-CCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM-SPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAIL 254 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~-~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL 254 (448)
+.++++| +++-+.+.+.++.+..+..+ .|+++++.... .......+-..+.-+-.+|++.+++...+
T Consensus 48 ~dlvl~D-~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~-----------~~~~~~~~~~g~~~~l~KP~~~~~l~~~i 115 (124)
T 1srr_A 48 PDLVLLD-MKIPGMDGIEILKRMKVIDENIRVIIMTAYGE-----------LDMIQESKELGALTHFAKPFDIDEIRDAV 115 (124)
T ss_dssp CSEEEEE-SCCTTCCHHHHHHHHHHHCTTCEEEEEESSCC-----------HHHHHHHHHHTCCCEEESSCCHHHHHHHH
T ss_pred CCEEEEe-cCCCCCCHHHHHHHHHHhCCCCCEEEEEccCc-----------hHHHHHHHhcChHhhccCCCCHHHHHHHH
Confidence 6899998 44444455666655555433 45555443321 00111222222333446899999998887
Q ss_pred H
Q psy1686 255 K 255 (448)
Q Consensus 255 ~ 255 (448)
+
T Consensus 116 ~ 116 (124)
T 1srr_A 116 K 116 (124)
T ss_dssp H
T ss_pred H
Confidence 6
No 212
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=21.91 E-value=82 Score=28.64 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=41.7
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILK 255 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~ 255 (448)
|.++++| +++-+.+-++++-+.-+.+..|+++++..... ..+..++-.-+.-|-.+|++.+++...++
T Consensus 82 ~DlvllD-~~lp~~~G~~l~~~lr~~~~~~iI~lt~~~~~-----------~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~ 149 (249)
T 3q9s_A 82 PDLILLD-LGLPDFDGGDVVQRLRKNSALPIIVLTARDTV-----------EEKVRLLGLGADDYLIKPFHPDELLARVK 149 (249)
T ss_dssp CSEEEEE-CCSCHHHHHHHHHHHHTTCCCCEEEEESCCSH-----------HHHHHHHHHTCSEEEESSCCHHHHHHHHH
T ss_pred CCEEEEc-CCCCCCCHHHHHHHHHcCCCCCEEEEECCCCH-----------HHHHHHHHCCCcEEEECCCCHHHHHHHHH
Confidence 6899987 56666677787777777666676665544310 11112222223345568999999887776
No 213
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=21.87 E-value=1.4e+02 Score=23.47 Aligned_cols=68 Identities=9% Similarity=0.138 Sum_probs=38.7
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhh-cCC-CeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALES-EMS-PVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAI 253 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe-~~~-pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~I 253 (448)
+.++|+| +++-+.+.++++.+..+. .+. |+++++.... .......+...+.-|-.+|++.+++...
T Consensus 53 ~dlvi~D-~~l~~~~g~~~~~~l~~~~~~~~~ii~~s~~~~-----------~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 120 (136)
T 3hdv_A 53 IGLMITD-LRMQPESGLDLIRTIRASERAALSIIVVSGDTD-----------VEEAVDVMHLGVVDFLLKPVDLGKLLEL 120 (136)
T ss_dssp EEEEEEC-SCCSSSCHHHHHHHHHTSTTTTCEEEEEESSCC-----------HHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CcEEEEe-ccCCCCCHHHHHHHHHhcCCCCCCEEEEeCCCC-----------hHHHHHHHhCCcceEEeCCCCHHHHHHH
Confidence 5888887 455566677777766665 233 4444433321 0001122222233455699999999888
Q ss_pred HH
Q psy1686 254 LK 255 (448)
Q Consensus 254 L~ 255 (448)
++
T Consensus 121 i~ 122 (136)
T 3hdv_A 121 VN 122 (136)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 214
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=21.69 E-value=2.3e+02 Score=24.55 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=39.5
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhc-CCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESE-MSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAIL 254 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~-~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL 254 (448)
|.++++| +++-+.+.++++....+.. ..|+++++.... .......+-.-+.-|-.+|++.+++...+
T Consensus 52 ~dlvllD-~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~-----------~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i 119 (233)
T 1ys7_A 52 PDAIVLD-INMPVLDGVSVVTALRAMDNDVPVCVLSARSS-----------VDDRVAGLEAGADDYLVKPFVLAELVARV 119 (233)
T ss_dssp CSEEEEE-SSCSSSCHHHHHHHHHHTTCCCCEEEEECCCT-----------TTCCCTTTTTTCSEEEESSCCHHHHHHHH
T ss_pred CCEEEEe-CCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCC-----------HHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 6899998 4554555666666655543 356665544331 11122333333444556899999988777
Q ss_pred H
Q psy1686 255 K 255 (448)
Q Consensus 255 ~ 255 (448)
+
T Consensus 120 ~ 120 (233)
T 1ys7_A 120 K 120 (233)
T ss_dssp H
T ss_pred H
Confidence 6
No 215
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=21.58 E-value=60 Score=32.77 Aligned_cols=13 Identities=46% Similarity=0.795 Sum_probs=11.5
Q ss_pred eEEEEeccCCCCH
Q psy1686 177 GVLFIDEVHMLDI 189 (448)
Q Consensus 177 ~VLfIDEVH~L~~ 189 (448)
++++|||+|+++.
T Consensus 101 ~~vViDEah~~~~ 113 (440)
T 1yks_A 101 EVIIMDEAHFLDP 113 (440)
T ss_dssp SEEEETTTTCCSH
T ss_pred cEEEEECccccCc
Confidence 8899999999954
No 216
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=21.54 E-value=1.6e+02 Score=23.22 Aligned_cols=69 Identities=10% Similarity=0.166 Sum_probs=38.7
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhcCC-CeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHH
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESEMS-PVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAI 253 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~-pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~I 253 (448)
.+.++|+| +++-+.+.++++.+..+..+. |+++++.... ...+...+...+.-|-.+|++.+++...
T Consensus 49 ~~dlvi~d-~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~-----------~~~~~~~~~~g~~~~l~kp~~~~~l~~~ 116 (143)
T 3jte_A 49 SIDVVITD-MKMPKLSGMDILREIKKITPHMAVIILTGHGD-----------LDNAILAMKEGAFEYLRKPVTAQDLSIA 116 (143)
T ss_dssp TCCEEEEE-SCCSSSCHHHHHHHHHHHCTTCEEEEEECTTC-----------HHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CCCEEEEe-CCCCCCcHHHHHHHHHHhCCCCeEEEEECCCC-----------HHHHHHHHHhCcceeEeCCCCHHHHHHH
Confidence 36899998 455555667766666655443 4554443321 0001122222223355689999999887
Q ss_pred HH
Q psy1686 254 LK 255 (448)
Q Consensus 254 L~ 255 (448)
++
T Consensus 117 l~ 118 (143)
T 3jte_A 117 IN 118 (143)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 217
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=21.48 E-value=97 Score=25.08 Aligned_cols=68 Identities=15% Similarity=0.145 Sum_probs=38.3
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCC-CeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMS-PVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAIL 254 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~-pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL 254 (448)
+.++++| +++-+.+.++++....+..+. |+++++.... ...+...+...+.-|-.+|++.+++...+
T Consensus 62 ~dlii~d-~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~-----------~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i 129 (152)
T 3eul_A 62 PDVALLD-YRMPGMDGAQVAAAVRSYELPTRVLLISAHDE-----------PAIVYQALQQGAAGFLLKDSTRTEIVKAV 129 (152)
T ss_dssp CSEEEEE-TTCSSSCHHHHHHHHHHTTCSCEEEEEESCCC-----------HHHHHHHHHTTCSEEEETTCCHHHHHHHH
T ss_pred CCEEEEe-CCCCCCCHHHHHHHHHhcCCCCeEEEEEccCC-----------HHHHHHHHHcCCCEEEecCCCHHHHHHHH
Confidence 6889988 345555667777666665543 4444433321 00011222222334556899999998887
Q ss_pred H
Q psy1686 255 K 255 (448)
Q Consensus 255 ~ 255 (448)
+
T Consensus 130 ~ 130 (152)
T 3eul_A 130 L 130 (152)
T ss_dssp H
T ss_pred H
Confidence 6
No 218
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=21.42 E-value=30 Score=31.26 Aligned_cols=13 Identities=31% Similarity=0.179 Sum_probs=11.0
Q ss_pred eEEEEeccCCCCH
Q psy1686 177 GVLFIDEVHMLDI 189 (448)
Q Consensus 177 ~VLfIDEVH~L~~ 189 (448)
.+++|||+|++..
T Consensus 177 ~~lViDEah~~~~ 189 (245)
T 3dkp_A 177 EWLVVDESDKLFE 189 (245)
T ss_dssp CEEEESSHHHHHH
T ss_pred cEEEEeChHHhcc
Confidence 7899999999854
No 219
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=21.34 E-value=1.1e+02 Score=26.61 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh-hhhCCCcccHHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVC-RRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a-~~~~~~~It~e~V~~~~~ 308 (448)
|+.+|..++++.+ + =+...|+..|...| ...+++.|+..||..+..
T Consensus 38 Is~eA~vliakA~-E---lFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~ 84 (140)
T 2byk_A 38 ITNEVLFLMTKCT-E---LFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN 84 (140)
T ss_dssp CCHHHHHHHHHHH-H---HHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred ccHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence 8889998888876 2 24556677777777 666778999999999986
No 220
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=21.20 E-value=80 Score=33.69 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=12.5
Q ss_pred CeEEEEeccCCCCHH
Q psy1686 176 PGVLFIDEVHMLDIE 190 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~ 190 (448)
..+++|||+|+++..
T Consensus 278 ~~~iViDEah~~~~~ 292 (618)
T 2whx_A 278 YNLIVMDEAHFTDPC 292 (618)
T ss_dssp CSEEEEESTTCCSHH
T ss_pred CeEEEEECCCCCCcc
Confidence 388999999999654
No 221
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=20.72 E-value=79 Score=24.97 Aligned_cols=68 Identities=15% Similarity=0.153 Sum_probs=37.3
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhh---cCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALES---EMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQA 252 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe---~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~ 252 (448)
+.++|+|- ++-+.+.+.++.+..+. +..|+++++.... ...+...+...+.-|-.+|++.+++..
T Consensus 55 ~dlii~d~-~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~-----------~~~~~~~~~~g~~~~l~kP~~~~~l~~ 122 (143)
T 3cnb_A 55 PDVVMLDL-MMVGMDGFSICHRIKSTPATANIIVIAMTGALT-----------DDNVSRIVALGAETCFGKPLNFTLLEK 122 (143)
T ss_dssp CSEEEEET-TCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCC-----------HHHHHHHHHTTCSEEEESSCCHHHHHH
T ss_pred CCEEEEec-ccCCCcHHHHHHHHHhCccccCCcEEEEeCCCC-----------HHHHHHHHhcCCcEEEeCCCCHHHHHH
Confidence 68999984 44455566666666553 2234554443321 001112222233345568999999988
Q ss_pred HHH
Q psy1686 253 ILK 255 (448)
Q Consensus 253 IL~ 255 (448)
.++
T Consensus 123 ~i~ 125 (143)
T 3cnb_A 123 TIK 125 (143)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
No 222
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=20.34 E-value=2.3e+02 Score=36.61 Aligned_cols=112 Identities=15% Similarity=0.168 Sum_probs=65.1
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhcC------CCeEEEEecCce-----eEeeccccCC----CCCCChhhhhhccccc
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESEM------SPVVITATNRGV-----TKIRGTAYSS----PHGIPIDLLDRMVIIP 241 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~~------~pi~IlaT~~~i-----~lI~~Ttenp----~~~Ip~~lLSR~~ii~ 241 (448)
.-.++||++|++.+..+++...++.-. ...|.+-....+ +.+-. |-|| ...+|..|.+||..+.
T Consensus 658 aW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfi-TmNpgY~gr~eLP~nLk~lFr~v~ 736 (3245)
T 3vkg_A 658 AWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFV-TMNPGYAGRSNLPDNLKKLFRSMA 736 (3245)
T ss_dssp CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEE-CBCCCGGGCCCSCHHHHTTEEEEE
T ss_pred cEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEE-EeCCCccCcccChHHHHhhcEEEE
Confidence 567889999999988888765443110 011110000000 00000 2222 4579999999999999
Q ss_pred CCCCCHHHHHHHHHHhc-CC-HHHH--H-----HHHH--Hc----CCCCHHHHHHHHHHHHHH
Q psy1686 242 TQPYQDEEIQAILKIRL-MQ-TDGL--R-----VLTK--IA----LDTSLRYAIQLITTASVV 289 (448)
Q Consensus 242 ~~pys~~eI~~IL~~Ra-i~-deal--~-----~La~--~a----~~Gd~R~AL~lLe~a~~~ 289 (448)
+..-+.+.|.+|+-... +. -..| . .|++ +| ++-++|---+.|..|...
T Consensus 737 m~~Pd~~~i~ei~L~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~l 799 (3245)
T 3vkg_A 737 MIKPDREMIAQVMLYSQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGI 799 (3245)
T ss_dssp CCSCCHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Confidence 99999999999876443 22 1111 1 1111 12 245799888888887654
No 223
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=20.10 E-value=1.1e+02 Score=24.52 Aligned_cols=68 Identities=15% Similarity=0.275 Sum_probs=38.6
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhc---CCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESE---MSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQA 252 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~---~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~ 252 (448)
+.++++| ++|=+.+.++++.+.-+.+ ..|+++++..... ......+..-+.-|-.+|++.+++..
T Consensus 49 ~dlvl~D-~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~-----------~~~~~~~~~ga~~~l~KP~~~~~L~~ 116 (136)
T 3t6k_A 49 PDALICD-VLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQGDI-----------SAKIAGFEAGANDYLAKPFEPQELVY 116 (136)
T ss_dssp CSEEEEE-SCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTTCH-----------HHHHHHHHHTCSEEEETTCCHHHHHH
T ss_pred CCEEEEe-CCCCCCCHHHHHHHHHcCCCcCCccEEEEecCCCH-----------HHHHHHHhcCcceEEeCCCCHHHHHH
Confidence 6899997 5665666666666555532 3466655544310 00111222223335568999999988
Q ss_pred HHH
Q psy1686 253 ILK 255 (448)
Q Consensus 253 IL~ 255 (448)
.++
T Consensus 117 ~i~ 119 (136)
T 3t6k_A 117 RVK 119 (136)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
Done!