RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1686
(448 letters)
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 40.9 bits (95), Expect = 2e-04
Identities = 29/129 (22%), Positives = 45/129 (34%), Gaps = 10/129 (7%)
Query: 178 VLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM 237
V IDEVHML F+ L + LE V K+ T S + LD
Sbjct: 118 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 177
Query: 238 VIIPTQPYQDEEIQAILKIRLMQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATE 297
I + E + L++L + A + SLR A+ L A +
Sbjct: 178 QIRHQLEHILNEEH-----IAHEPRALQLLARAA-EGSLRDALSLTDQAIASGDGQ---- 227
Query: 298 ICMEDIRKV 306
+ + + +
Sbjct: 228 VSTQAVSAM 236
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 37.5 bits (87), Expect = 0.002
Identities = 34/157 (21%), Positives = 57/157 (36%), Gaps = 41/157 (26%)
Query: 176 PGVLFIDEVHML-----------DIECFSFLNRAL------ESEMSPVVITATNRGVTKI 218
P ++FIDE+ + + E LN+ L E + + VV+ ATNR
Sbjct: 102 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNR----- 156
Query: 219 RGTAYSSPHGIPIDLL-----DRMVIIPTQPYQDEEIQAILKIRL--MQTDGLRVLTKIA 271
P + LL DR + I + + IL+I L +A
Sbjct: 157 -------PDILDPALLRPGRFDRQIAID--APDVKGREQILRIHARGKPLAEDVDLALLA 207
Query: 272 LDT---SLRYAIQLITTASVVCRRRKATEICMEDIRK 305
T L+ A+++ R +I M+D+ +
Sbjct: 208 KRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEE 244
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 36.7 bits (83), Expect = 0.004
Identities = 28/206 (13%), Positives = 50/206 (24%), Gaps = 22/206 (10%)
Query: 122 VHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFI 181
+ + + L+L TG + + E ++ +
Sbjct: 79 LTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVIL 138
Query: 182 DEVHMLD------IECFSFLNRALESEMSPVVITATNRGVTKIRGTAY--SSPHGIPIDL 233
DE + E L R E E+ + IP
Sbjct: 139 DEFQSMLSSPRIAAEDLYTLLRVHE-EIPSRDGVNRIGFLLVASDVRALSYMREKIPQVE 197
Query: 234 LDRMVIIPTQPYQDEEIQAILKIRLMQTDGLRVLTKIALDT-------------SLRYAI 280
+ Y+ E+ IL+ R V L+ S R AI
Sbjct: 198 SQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAI 257
Query: 281 QLITTASVVCRRRKATEICMEDIRKV 306
+ A + + + +RK
Sbjct: 258 VALKMACEMAEAMGRDSLSEDLVRKA 283
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 34.8 bits (80), Expect = 0.014
Identities = 31/157 (19%), Positives = 52/157 (33%), Gaps = 41/157 (26%)
Query: 176 PGVLFIDEVHML-----------DIECFSFLNRAL------ESEMSPVVITATNRGVTKI 218
P ++FIDE+ + E LN+ L E +VI ATNR
Sbjct: 105 PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNR----- 159
Query: 219 RGTAYSSPHGIPIDLL-----DRMVIIPTQPYQDEEIQAILKIRLMQTD-----GLRVLT 268
P + LL DR V++ + ILK+ + + ++
Sbjct: 160 -------PDVLDPALLRPGRFDRQVVVG--LPDVRGREQILKVHMRRVPLAPDIDAAIIA 210
Query: 269 KIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRK 305
+ S L+ A++ R + M + K
Sbjct: 211 RGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEK 247
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 31.2 bits (70), Expect = 0.27
Identities = 15/139 (10%), Positives = 41/139 (29%), Gaps = 7/139 (5%)
Query: 171 KAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIP 230
++ +P I+ + L +L+ +++ + + + T
Sbjct: 216 ESRDLPSGQGINNLDNL----RDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKT 271
Query: 231 IDLLDRMVIIPTQPYQDEEIQAILKIRLMQ---TDGLRVLTKIALDTSLRYAIQLITTAS 287
+ I + + L + G+ +L + + Q I +
Sbjct: 272 LQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPVAEFAQSIQSRI 331
Query: 288 VVCRRRKATEICMEDIRKV 306
V + R E + +K+
Sbjct: 332 VEWKERLDKEFSLSVYQKM 350
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 30.3 bits (68), Expect = 0.45
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 12/49 (24%)
Query: 177 GVLFIDEVHMLDIECFSFLNRALES-EMSPV-----------VITATNR 213
G LF+DE+ L +E + L R +ES + + ++ ATNR
Sbjct: 96 GTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNR 144
>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide
synthase {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 183
Score = 25.8 bits (55), Expect = 8.9
Identities = 13/115 (11%), Positives = 32/115 (27%), Gaps = 4/115 (3%)
Query: 66 MVWPCVMCGRGKNPQKVKKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTV 125
G ++ +I T LA R +
Sbjct: 67 SRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKK 126
Query: 126 TLHEIDVIN----SRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVP 176
++ + +++ F + ++ P Q+ + + +GK E++P
Sbjct: 127 DVYADASLGLAALAKSASFSVVDLDLNLKLQPARYRQLLQHILQHVADGKLEVLP 181
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.388
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,659,952
Number of extensions: 79459
Number of successful extensions: 233
Number of sequences better than 10.0: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 14
Length of query: 448
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 360
Effective length of database: 1,199,356
Effective search space: 431768160
Effective search space used: 431768160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.0 bits)