BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16860
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 80.9 bits (198), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 45 GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
G++M I++ + GN+LVI ++ K +L+ +TNYF+ SLA ADL++ L V+PF A LT
Sbjct: 186 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILT 245
Query: 105 DEWYFGYFMCDVWNSFDV 122
W FG F C+ W S DV
Sbjct: 246 KTWTFGNFWCEFWTSIDV 263
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 79.0 bits (193), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 45 GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
G++M I++ + GN+LVI ++ K +L+ +TNYF+ SLA ADL++ L V+PF A LT
Sbjct: 9 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILT 68
Query: 105 DEWYFGYFMCDVWNSFDV 122
W FG F C+ W S DV
Sbjct: 69 KTWTFGNFWCEFWTSIDV 86
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 51/78 (65%)
Query: 45 GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
G++M I++ + GN+LVI ++ K +L+ +TNYF+ SLA ADL++ L V+PF A L
Sbjct: 13 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAACILM 72
Query: 105 DEWYFGYFMCDVWNSFDV 122
W FG F C+ W S DV
Sbjct: 73 KMWTFGNFWCEFWTSIDV 90
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 75.9 bits (185), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 51/78 (65%)
Query: 45 GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
G++M I++ + GN+LVI ++ K +L+ +TNYF+ SLA ADL++ L V+PF A L
Sbjct: 38 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 97
Query: 105 DEWYFGYFMCDVWNSFDV 122
W FG F C+ W S DV
Sbjct: 98 KMWTFGNFWCEFWTSIDV 115
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 75.9 bits (185), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 51/78 (65%)
Query: 45 GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
G++M I++ + GN+LVI ++ K +L+ +TNYF+ SLA ADL++ L V+PF A L
Sbjct: 37 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 96
Query: 105 DEWYFGYFMCDVWNSFDV 122
W FG F C+ W S DV
Sbjct: 97 KMWTFGNFWCEFWTSIDV 114
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 75.9 bits (185), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 51/78 (65%)
Query: 45 GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
G++M I++ + GN+LVI ++ K +L+ +TNYF+ SLA ADL++ L V+PF A L
Sbjct: 14 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 73
Query: 105 DEWYFGYFMCDVWNSFDV 122
W FG F C+ W S DV
Sbjct: 74 KMWTFGNFWCEFWTSIDV 91
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 75.9 bits (185), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 51/78 (65%)
Query: 45 GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
G++M I++ + GN+LVI ++ K +L+ +TNYF+ SLA ADL++ L V+PF A L
Sbjct: 44 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 103
Query: 105 DEWYFGYFMCDVWNSFDV 122
W FG F C+ W S DV
Sbjct: 104 KMWTFGNFWCEFWTSIDV 121
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 75.9 bits (185), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 51/78 (65%)
Query: 45 GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
G++M I++ + GN+LVI ++ K +L+ +TNYF+ SLA ADL++ L V+PF A L
Sbjct: 45 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 104
Query: 105 DEWYFGYFMCDVWNSFDV 122
W FG F C+ W S DV
Sbjct: 105 KMWTFGNFWCEFWTSIDV 122
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 75.9 bits (185), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 51/78 (65%)
Query: 45 GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
G++M I++ + GN+LVI ++ K +L+ +TNYF+ SLA ADL++ L V+PF A L
Sbjct: 45 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 104
Query: 105 DEWYFGYFMCDVWNSFDV 122
W FG F C+ W S DV
Sbjct: 105 KMWTFGNFWCEFWTSIDV 122
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 52/78 (66%)
Query: 45 GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
+LM +++ + GN+LVI ++ ++L+ +TN F+ SLA ADL+V L V+PF A + +
Sbjct: 15 SLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVR 74
Query: 105 DEWYFGYFMCDVWNSFDV 122
W +G F+C++W S DV
Sbjct: 75 GTWLWGSFLCELWTSLDV 92
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 52/78 (66%)
Query: 45 GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
+LM +++ + GN+LVI ++ ++L+ +TN F+ SLA ADL+V L V+PF A + +
Sbjct: 15 SLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVR 74
Query: 105 DEWYFGYFMCDVWNSFDV 122
W +G F+C++W S DV
Sbjct: 75 GTWLWGSFLCELWTSLDV 92
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 65.1 bits (157), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 40 PFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNA 99
P + C +I+ + GN LV ++V+K R L+ TNY VVSLA ADLLVA VMP+
Sbjct: 37 PHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVV 96
Query: 100 IVSLTDE-WYFGYFMCDVWNSFDV 122
+ +T W F CDV+ + DV
Sbjct: 97 YLEVTGGVWNFSRICCDVFVTLDV 120
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 58.9 bits (141), Expect = 8e-10, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 38 IFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPF 97
I+ + L F+ + I+GN+LVI++ +++L+ + NYF++SLA ADL++ + M
Sbjct: 9 IWQVVFIAFLTGFLALVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNL 68
Query: 98 NAIVSLTDEWYFGYFMCDVWNSFDVYFSQYRKHFNMYEVDFE 139
+ + W G CD+W S D Y + N+ + F+
Sbjct: 69 FTTYIIMNRWALGNLACDLWLSID-YVASNASVMNLLVISFD 109
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 37 HIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMP 96
+ P ++ +C + + NLLV+ +V RKL + N ++VSL+ ADL+V VMP
Sbjct: 7 QLMPLVVVLSTICLVTVGL---NLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMP 63
Query: 97 FNAIVSLTDEWYFGYFMCDVWNSFD 121
N + L +W G +C W S D
Sbjct: 64 MNILYLLMSKWSLGRPLCLFWLSMD 88
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 37 HIFPFI--IKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCV 94
HI P I I + + + ++GN LV+ +I++ K++ TN ++ +LA AD LV
Sbjct: 16 HISPAIPVIITAVYSVVFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVT-TT 74
Query: 95 MPFNAIVSLTDEWYFGYFMCDVWNSFDVY 123
MPF + V L + W FG +C + S D Y
Sbjct: 75 MPFQSTVYLMNSWPFGDVLCKIVLSIDYY 103
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 55 AILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMC 114
+LGN+LV+ ++++ KL+ TN ++ +LA AD L A +PF + L + W FG +C
Sbjct: 28 GLLGNVLVMFGIVRYTKLKTATNIYIFNLALADAL-ATSTLPFQSAKYLMETWPFGELLC 86
Query: 115 DVWNSFDVY 123
S D Y
Sbjct: 87 KAVLSIDYY 95
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 56 ILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCD 115
I+GN+LV++S+ +R L+ + NYF+ SLA ADL++ + M + ++ W G +CD
Sbjct: 38 IIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCD 97
Query: 116 VWNSFD 121
+W + D
Sbjct: 98 LWLALD 103
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 51 IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
+ + +LGN LV+ +++H K++ TN ++ +LA AD LV L +PF L W FG
Sbjct: 135 VCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLV-LLTLPFQGTDILLGFWPFG 193
Query: 111 YFMCDVWNSFDVYFSQYRKHFNM 133
+C + D Y++ + F +
Sbjct: 194 NALCKTVIAID-YYNMFTSTFTL 215
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 8/61 (13%)
Query: 66 VIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT----DEWYFGYFMCDVWNSFD 121
++ H+++R +TNYF+V+LAFA+ +A FN +V+ T +EWY+G F C N F
Sbjct: 57 ILAHKRMRTVTNYFLVNLAFAEASMAA----FNTVVNFTYAVHNEWYYGLFYCKFHNFFP 112
Query: 122 V 122
+
Sbjct: 113 I 113
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 47 LMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDE 106
L + + + GN LV+ ++++ K++ TN ++ +LA AD L A +PF ++ L
Sbjct: 23 LYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADAL-ATSTLPFQSVNYLMGT 81
Query: 107 WYFGYFMCDVWNSFDVY 123
W FG +C + S D Y
Sbjct: 82 WPFGNILCKIVISIDYY 98
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 51 IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
I +T I+GN LVI+ + +KLR +T+ + + L+ ADLL + +PF A+ ++ + WYFG
Sbjct: 58 IFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVI-TLPFWAVDAVAN-WYFG 115
Query: 111 YFMCDV 116
F+C
Sbjct: 116 NFLCKA 121
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 51 IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
I +T I+GN LVI+ + +KLR +T+ + + L+ ADLL + +PF A+ ++ + WYFG
Sbjct: 58 IFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVI-TLPFWAVDAVAN-WYFG 115
Query: 111 YFMC 114
F+C
Sbjct: 116 NFLC 119
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 51 IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
I +T I+GN LVI+ + +KLR +T+ + + L+ ADLL + +PF A+ ++ + WYFG
Sbjct: 58 IFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVI-TLPFWAVDAVAN-WYFG 115
Query: 111 YFMCDV 116
F+C
Sbjct: 116 NFLCKA 121
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 51 IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
I + AILGN+LV +V + L+ +TNYFVVSLA AD+ V + +PF +S
Sbjct: 31 IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS 82
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 36/52 (69%)
Query: 51 IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
I + AILGN+LV +V + L+ +TNYFVVSLA AD+LV + +PF +S
Sbjct: 16 IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPFAITIS 67
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 46.6 bits (109), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 51 IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
I + AILGN+LV +V + L+ +TNYFVVSLA AD+ V + +PF +S
Sbjct: 41 IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS 92
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 51 IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
I + AILGN+LV +V + L+ +TNYFVVSLA AD+ V + +PF +S
Sbjct: 16 IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS 67
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 51 IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
I + AILGN+LV +V + L+ +TNYFVVS A AD+LV + +PF +S
Sbjct: 16 IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIAIS 67
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 46 MLMCFIIITAILG---NLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
ML ++ + +LG N L + ++H+KLR NY +++LA ADL + S
Sbjct: 40 MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTS 99
Query: 103 LTDEWYFGYFMCDV 116
L + FG C++
Sbjct: 100 LHGYFVFGPTGCNL 113
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 46 MLMCFIIITAILG---NLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
ML ++ + +LG N L + ++H+KLR NY +++LA ADL + S
Sbjct: 39 MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTS 98
Query: 103 LTDEWYFGYFMCDV 116
L + FG C++
Sbjct: 99 LHGYFVFGPTGCNL 112
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 46 MLMCFIIITAILG---NLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
ML ++ + +LG N L + ++H+KLR NY +++LA ADL + S
Sbjct: 40 MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTS 99
Query: 103 LTDEWYFGYFMCDVWNSF 120
L + FG C++ F
Sbjct: 100 LHGYFVFGPTGCNLQGFF 117
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 46 MLMCFIIITAILG---NLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
ML ++ + +LG N L + ++H+KLR NY +++LA ADL + S
Sbjct: 40 MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTS 99
Query: 103 LTDEWYFGYFMCDV 116
L + FG C++
Sbjct: 100 LHGYFVFGPTGCNL 113
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 46 MLMCFIIITAILG---NLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
ML ++ + +LG N L + ++H+KLR NY +++LA ADL + S
Sbjct: 40 MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTS 99
Query: 103 LTDEWYFGYFMCDV 116
L + FG C++
Sbjct: 100 LHGYFVFGPTGCNL 113
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 46 MLMCFIIITAILG---NLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
ML ++ + +LG N L + ++H+KLR NY +++LA ADL + S
Sbjct: 39 MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTS 98
Query: 103 LTDEWYFGYFMCDV 116
L + FG C++
Sbjct: 99 LHGYFVFGPTGCNL 112
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 68 KHRKLRIITNYFVVSLAFADLLVALC-VMPFNAIVSLTDEWYFGYFMCDVWN 118
K + L+ N F+++LAF+D +L P I +W FG+ C V+
Sbjct: 60 KTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYG 111
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 68 KHRKLRIITNYFVVSLAFADLLVALC-VMPFNAIVSLTDEWYFGYFMCDVWN 118
K + L+ N F+++LAF+D +L P I +W FG+ C V+
Sbjct: 61 KTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYG 112
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 46 MLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALC 93
++ CFII L N+ V++++ K +K YF+ +LA +DLL +
Sbjct: 72 LICCFII----LENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVA 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.339 0.150 0.489
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,024,996
Number of Sequences: 62578
Number of extensions: 96279
Number of successful extensions: 344
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 40
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 46 (22.3 bits)