Query psy16860
Match_columns 139
No_of_seqs 123 out of 1420
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 23:55:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16860.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16860hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4grv_A Neurotensin receptor ty 99.8 1E-19 3.5E-24 142.8 10.8 102 37-139 28-134 (510)
2 1u19_A Rhodopsin; G protein-co 99.8 5.2E-18 1.8E-22 125.7 13.4 102 37-139 34-135 (349)
3 2ks9_A Substance-P receptor; w 99.8 1E-17 3.5E-22 125.1 13.4 98 41-139 32-129 (364)
4 2rh1_A Beta-2-adrenergic recep 99.8 2.5E-18 8.4E-23 134.4 10.1 100 39-139 38-137 (500)
5 2lnl_A C-X-C chemokine recepto 99.7 1.3E-17 4.5E-22 121.7 11.1 97 40-139 10-106 (296)
6 3pbl_A D(3) dopamine receptor, 99.7 3.8E-18 1.3E-22 131.5 8.0 99 40-139 37-136 (481)
7 3uon_A Human M2 muscarinic ace 99.7 8.2E-18 2.8E-22 129.1 9.6 98 41-139 23-120 (467)
8 4dkl_A MU-type opioid receptor 99.7 3.2E-17 1.1E-21 125.6 10.9 99 39-139 15-113 (464)
9 3odu_A C-X-C chemokine recepto 99.7 7.8E-17 2.7E-21 124.8 11.1 99 38-139 45-143 (502)
10 3rze_A Histamine H1 receptor, 99.7 5.6E-17 1.9E-21 124.0 7.7 98 41-139 8-105 (452)
11 3vw7_A Proteinase-activated re 99.7 1.4E-16 4.7E-21 122.9 9.6 101 38-139 17-117 (484)
12 4amj_A Beta-1 adrenergic recep 99.7 8.5E-17 2.9E-21 117.3 7.6 99 40-139 10-108 (315)
13 3v2y_A Sphingosine 1-phosphate 99.7 2.5E-16 8.5E-21 123.7 10.6 97 41-139 63-159 (520)
14 3eml_A Human adenosine A2A rec 99.7 1.3E-16 4.6E-21 122.8 8.6 96 41-139 21-116 (488)
15 4ea3_A Fusion protein of nocic 99.7 3.5E-16 1.2E-20 120.0 10.6 99 39-139 123-221 (434)
16 4eiy_A Adenosine receptor A2A/ 99.7 5.8E-16 2E-20 118.2 10.6 99 38-139 28-126 (447)
17 3sn6_R Lysozyme, beta-2 adrene 99.6 3.6E-16 1.2E-20 122.4 8.8 99 40-139 181-279 (514)
18 2z73_A Rhodopsin; visual pigme 99.6 6.9E-16 2.4E-20 118.5 9.8 99 40-139 33-132 (448)
19 2lot_A Apelin receptor; membra 97.3 1.2E-05 4.1E-10 45.8 -1.8 31 43-73 30-60 (64)
20 3arc_I Photosystem II reaction 42.7 26 0.00088 17.2 2.5 18 42-59 9-26 (38)
21 2l2t_A Receptor tyrosine-prote 40.9 37 0.0013 17.3 4.6 10 62-71 29-38 (44)
22 2ks1_B Epidermal growth factor 24.6 78 0.0027 16.0 3.5 9 63-71 31-39 (44)
No 1
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=99.81 E-value=1e-19 Score=142.78 Aligned_cols=102 Identities=19% Similarity=0.357 Sum_probs=85.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCC---chHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--Ccccccc
Q psy16860 37 HIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLR---IITNYFVVSLAFADLLVALCVMPFNAIVSLT--DEWYFGY 111 (139)
Q Consensus 37 ~~~~~~~~~~~~~~i~~~g~~gN~lvi~v~~~~~~~~---~~~~~~i~nLa~~Dl~~~l~~~p~~~~~~~~--~~~~~g~ 111 (139)
....+++..++|.+++++|++||+++++++.++|++| +++|+|++|||++|++++++.+|+.+..... +.|.+|+
T Consensus 28 ~~~~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g~ 107 (510)
T 4grv_A 28 DIYSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGD 107 (510)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhhH
Confidence 3445778888999999999999999999999877554 7889999999999999999999998877654 5799999
Q ss_pred ccchhchHHhHHhhHHHHHHHHHhhccC
Q psy16860 112 FMCDVWNSFDVYFSQYRKHFNMYEVDFE 139 (139)
Q Consensus 112 ~~C~~~~~~~~~~~~~Si~~~m~~~~~~ 139 (139)
..|++..++..++..+|+ +++.++++|
T Consensus 108 ~~C~~~~~~~~~~~~~S~-~~l~~is~d 134 (510)
T 4grv_A 108 AGCRGYYFLRDACTYATA-LNVASLSVA 134 (510)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 999999999999999999 556666654
No 2
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=99.77 E-value=5.2e-18 Score=125.69 Aligned_cols=102 Identities=23% Similarity=0.345 Sum_probs=90.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCccccccccchh
Q psy16860 37 HIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDV 116 (139)
Q Consensus 37 ~~~~~~~~~~~~~~i~~~g~~gN~lvi~v~~~~~~~~~~~~~~i~nLa~~Dl~~~l~~~p~~~~~~~~~~~~~g~~~C~~ 116 (139)
.+....+...++.+++++|++||+++++++.++|++|+++|+++.|||++|++.++...|..+.....+.|.+|+..|++
T Consensus 34 ~~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~ 113 (349)
T 1u19_A 34 EPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNL 113 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhHHheEeehhhhhhhcCchhHHHHHHHHHHHHHHHhcchHHHHHHhcCeeeCChhHHHH
Confidence 34446778888999999999999999999999999999999999999999999999999998888888899999999999
Q ss_pred chHHhHHhhHHHHHHHHHhhccC
Q psy16860 117 WNSFDVYFSQYRKHFNMYEVDFE 139 (139)
Q Consensus 117 ~~~~~~~~~~~Si~~~m~~~~~~ 139 (139)
..++...+..+|++ ++.++++|
T Consensus 114 ~~~~~~~~~~~s~~-~l~~isid 135 (349)
T 1u19_A 114 EGFFATLGGEIALW-SLVVLAIE 135 (349)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHH
Confidence 99999999999984 45555543
No 3
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=99.76 E-value=1e-17 Score=125.15 Aligned_cols=98 Identities=30% Similarity=0.595 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCccccccccchhchHH
Q psy16860 41 FIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSF 120 (139)
Q Consensus 41 ~~~~~~~~~~i~~~g~~gN~lvi~v~~~~~~~~~~~~~~i~nLa~~Dl~~~l~~~p~~~~~~~~~~~~~g~~~C~~~~~~ 120 (139)
......++.+++++|++||+++++++.++|++|+++|+++.|||++|++.+++..|..+.....++|.+|+..|++..++
T Consensus 32 ~~~~~~~~~~i~~~gi~gN~lvi~vi~~~~~l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~ 111 (364)
T 2ks9_A 32 IVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFF 111 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhHHHH
Confidence 45557889999999999999999999999999999999999999999999999999888888888999999999999999
Q ss_pred hHHhhHHHHHHHHHhhccC
Q psy16860 121 DVYFSQYRKHFNMYEVDFE 139 (139)
Q Consensus 121 ~~~~~~~Si~~~m~~~~~~ 139 (139)
...+..+|++ ++.++++|
T Consensus 112 ~~~~~~~s~~-~l~~isid 129 (364)
T 2ks9_A 112 PIAAVFASIY-SMTAVAFD 129 (364)
T ss_dssp HHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHH
Confidence 9999999985 45555543
No 4
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=99.76 E-value=2.5e-18 Score=134.38 Aligned_cols=100 Identities=35% Similarity=0.692 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCccccccccchhch
Q psy16860 39 FPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWN 118 (139)
Q Consensus 39 ~~~~~~~~~~~~i~~~g~~gN~lvi~v~~~~~~~~~~~~~~i~nLa~~Dl~~~l~~~p~~~~~~~~~~~~~g~~~C~~~~ 118 (139)
....+..+++.+++++|++||+++++++.++|++|+++|+|+.|||++|++.+++.+|+.+.....+.|.+|...|++..
T Consensus 38 ~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~~~w~~~~~~C~~~~ 117 (500)
T 2rh1_A 38 VWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWT 117 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCcchhhHHH
Confidence 33567788899999999999999999999999999999999999999999999999999988888899999999999999
Q ss_pred HHhHHhhHHHHHHHHHhhccC
Q psy16860 119 SFDVYFSQYRKHFNMYEVDFE 139 (139)
Q Consensus 119 ~~~~~~~~~Si~~~m~~~~~~ 139 (139)
++..++..+|++ ++.++++|
T Consensus 118 ~~~~~~~~~Si~-~l~~isid 137 (500)
T 2rh1_A 118 SIDVLCVTASIE-TLCVIAVD 137 (500)
T ss_dssp HHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHH
Confidence 999999999995 55555554
No 5
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=121.73 Aligned_cols=97 Identities=25% Similarity=0.441 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCccccccccchhchH
Q psy16860 40 PFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNS 119 (139)
Q Consensus 40 ~~~~~~~~~~~i~~~g~~gN~lvi~v~~~~~~~~~~~~~~i~nLa~~Dl~~~l~~~p~~~~~~~~~~~~~g~~~C~~~~~ 119 (139)
.+++...+|.+++++|++||+++++++.++|++|+++|+|+.|||++|++.++. .|+...... ++|..|+..|+...+
T Consensus 10 ~~~i~~i~y~ii~i~gv~gN~lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~l~-~p~~~~~~~-~~~~~~~~~c~~~~~ 87 (296)
T 2lnl_A 10 NKYVVIIAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALT-LPIWAASKV-NGWIFGTFLCKVVSL 87 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCSTTHHHHHHHHHHHHHHHHH-HHHHHHHHH-SSSCCSSHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHh-hhHHHhhcc-CCCccchhHHHHHhh
Confidence 366788889999999999999999999999999999999999999999999765 666665544 459999999999999
Q ss_pred HhHHhhHHHHHHHHHhhccC
Q psy16860 120 FDVYFSQYRKHFNMYEVDFE 139 (139)
Q Consensus 120 ~~~~~~~~Si~~~m~~~~~~ 139 (139)
....+..+|+ +++.++++|
T Consensus 88 ~~~~~~~~s~-~~l~~isid 106 (296)
T 2lnl_A 88 LKEVNFYSGI-LLLACISVD 106 (296)
T ss_dssp HHHHHHHHHH-HHHHHHHHH
T ss_pred hhhhhHHHHH-HHHHHHHhh
Confidence 9999999998 556666654
No 6
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=99.74 E-value=3.8e-18 Score=131.55 Aligned_cols=99 Identities=37% Similarity=0.668 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhc-Cccccccccchhch
Q psy16860 40 PFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT-DEWYFGYFMCDVWN 118 (139)
Q Consensus 40 ~~~~~~~~~~~i~~~g~~gN~lvi~v~~~~~~~~~~~~~~i~nLa~~Dl~~~l~~~p~~~~~~~~-~~~~~g~~~C~~~~ 118 (139)
.+.+..+++.+++++|++||+++++++.++|++|+++|+|+.|||++|++.+++.+|..+..... +.|.+|...|++..
T Consensus 37 ~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~C~~~~ 116 (481)
T 3pbl_A 37 PHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFV 116 (481)
T ss_dssp ----CCSHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTSCCCSCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcchhhhHH
Confidence 35667788999999999999999999999999999999999999999999999999988876666 68999999999999
Q ss_pred HHhHHhhHHHHHHHHHhhccC
Q psy16860 119 SFDVYFSQYRKHFNMYEVDFE 139 (139)
Q Consensus 119 ~~~~~~~~~Si~~~m~~~~~~ 139 (139)
++..++..+|+ +++.++++|
T Consensus 117 ~~~~~~~~~s~-~~l~~is~d 136 (481)
T 3pbl_A 117 TLDVMMCTASI-WNLCAISID 136 (481)
T ss_dssp HHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHH
Confidence 99999999998 455555544
No 7
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=99.74 E-value=8.2e-18 Score=129.14 Aligned_cols=98 Identities=28% Similarity=0.585 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCccccccccchhchHH
Q psy16860 41 FIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSF 120 (139)
Q Consensus 41 ~~~~~~~~~~i~~~g~~gN~lvi~v~~~~~~~~~~~~~~i~nLa~~Dl~~~l~~~p~~~~~~~~~~~~~g~~~C~~~~~~ 120 (139)
..+...++.+++++|++||+++++++.++|++|+++|+|+.|||++|++.+++..|..+.....+.|.+|...|++..++
T Consensus 23 ~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~ 102 (467)
T 3uon_A 23 VVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLAL 102 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcchHhHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhHHHHHHHHHhhccC
Q psy16860 121 DVYFSQYRKHFNMYEVDFE 139 (139)
Q Consensus 121 ~~~~~~~Si~~~m~~~~~~ 139 (139)
..++..+|++ ++.++++|
T Consensus 103 ~~~~~~~s~~-~l~~isid 120 (467)
T 3uon_A 103 DYVVSNASVM-NLLIISFD 120 (467)
T ss_dssp HHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHH
Confidence 9999999994 55555544
No 8
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=99.72 E-value=3.2e-17 Score=125.59 Aligned_cols=99 Identities=24% Similarity=0.489 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCccccccccchhch
Q psy16860 39 FPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWN 118 (139)
Q Consensus 39 ~~~~~~~~~~~~i~~~g~~gN~lvi~v~~~~~~~~~~~~~~i~nLa~~Dl~~~l~~~p~~~~~~~~~~~~~g~~~C~~~~ 118 (139)
...++...++.+++++|++||+++++++.++|++|+++|+|+.|||++|++.++. +|+.+.....+.|.+|...|++..
T Consensus 15 ~~~~~~~~~~~~~~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~-~p~~~~~~~~~~~~~~~~~C~~~~ 93 (464)
T 4dkl_A 15 VTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATST-LPFQSVNYLMGTWPFGNILCKIVI 93 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCCSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCcccccchhhhHH
Confidence 3467888999999999999999999999999999999999999999999999877 898888888899999999999999
Q ss_pred HHhHHhhHHHHHHHHHhhccC
Q psy16860 119 SFDVYFSQYRKHFNMYEVDFE 139 (139)
Q Consensus 119 ~~~~~~~~~Si~~~m~~~~~~ 139 (139)
++..++..+|++ ++.++++|
T Consensus 94 ~~~~~~~~~s~~-~l~~is~d 113 (464)
T 4dkl_A 94 SIDYYNMFTSIF-TLCTMSVD 113 (464)
T ss_dssp HHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHH
Confidence 999999999994 55555554
No 9
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=99.70 E-value=7.8e-17 Score=124.81 Aligned_cols=99 Identities=28% Similarity=0.489 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCccccccccchhc
Q psy16860 38 IFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVW 117 (139)
Q Consensus 38 ~~~~~~~~~~~~~i~~~g~~gN~lvi~v~~~~~~~~~~~~~~i~nLa~~Dl~~~l~~~p~~~~~~~~~~~~~g~~~C~~~ 117 (139)
...+.+...++.+++++|++||+++++++.++|++|+++|+|+.|||++|++.+ +.+|+.+..... .|.+|...|++.
T Consensus 45 ~~~~~~~~~~~~~i~~~g~~gN~lvi~~~~~~~~l~~~~~~~l~~La~~Dll~~-~~~p~~~~~~~~-~~~~~~~~C~~~ 122 (502)
T 3odu_A 45 NFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFV-ITLPFWAVDAVA-NWYFGNFLCKAV 122 (502)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHH-TTHHHHHHHHHT-CCCSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc-CCcCCchhhhhH
Confidence 445788889999999999999999999999999999999999999999999994 678887776655 699999999999
Q ss_pred hHHhHHhhHHHHHHHHHhhccC
Q psy16860 118 NSFDVYFSQYRKHFNMYEVDFE 139 (139)
Q Consensus 118 ~~~~~~~~~~Si~~~m~~~~~~ 139 (139)
.++..++..+|+ +++.++++|
T Consensus 123 ~~~~~~~~~~s~-~~l~~is~d 143 (502)
T 3odu_A 123 HVIYTVNLYSSV-WILAFISLD 143 (502)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHH
Confidence 999999999998 555555554
No 10
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=99.68 E-value=5.6e-17 Score=124.00 Aligned_cols=98 Identities=31% Similarity=0.517 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCccccccccchhchHH
Q psy16860 41 FIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSF 120 (139)
Q Consensus 41 ~~~~~~~~~~i~~~g~~gN~lvi~v~~~~~~~~~~~~~~i~nLa~~Dl~~~l~~~p~~~~~~~~~~~~~g~~~C~~~~~~ 120 (139)
..+..+++.+++++|++||+++++++.++|++|+++|+|+.|||++|++.+++.+|+.+.....++|.+|...|++..++
T Consensus 8 ~~~~~~~~~~~~~~gi~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~ 87 (452)
T 3rze_A 8 LMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLSM 87 (452)
T ss_dssp -CGGGTHHHHHHHHHHHHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCchhHhHHHHH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhHHHHHHHHHhhccC
Q psy16860 121 DVYFSQYRKHFNMYEVDFE 139 (139)
Q Consensus 121 ~~~~~~~Si~~~m~~~~~~ 139 (139)
..++..+|+ +++.++++|
T Consensus 88 ~~~~~~~s~-~~l~~is~d 105 (452)
T 3rze_A 88 DYVASTASI-FSVFILCID 105 (452)
T ss_dssp HHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHH
Confidence 999999998 555555554
No 11
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=122.95 Aligned_cols=101 Identities=14% Similarity=0.147 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCccccccccchhc
Q psy16860 38 IFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVW 117 (139)
Q Consensus 38 ~~~~~~~~~~~~~i~~~g~~gN~lvi~v~~~~~~~~~~~~~~i~nLa~~Dl~~~l~~~p~~~~~~~~~~~~~g~~~C~~~ 117 (139)
...+.+...++.+++++|++||+++++++.++|++|+++|+|+.|||++|++.++...|..+.....+.|.+|...|++.
T Consensus 17 ~~~~~~~~~~~~~i~~~~i~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 96 (484)
T 3vw7_A 17 SWLTLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSVLPFKISYYFSGSDWQFGSELCRFV 96 (484)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTSCCCSCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhHHhHH
Confidence 44477888999999999999999999999999999999999999999999999766444444444445899999999999
Q ss_pred hHHhHHhhHHHHHHHHHhhccC
Q psy16860 118 NSFDVYFSQYRKHFNMYEVDFE 139 (139)
Q Consensus 118 ~~~~~~~~~~Si~~~m~~~~~~ 139 (139)
.++..++..+|+ +++.++++|
T Consensus 97 ~~~~~~~~~~S~-~~l~~is~d 117 (484)
T 3vw7_A 97 TAAFYCNMYASI-LLMTVISID 117 (484)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHH
Confidence 999999999999 556666554
No 12
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=99.68 E-value=8.5e-17 Score=117.28 Aligned_cols=99 Identities=31% Similarity=0.626 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCccccccccchhchH
Q psy16860 40 PFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNS 119 (139)
Q Consensus 40 ~~~~~~~~~~~i~~~g~~gN~lvi~v~~~~~~~~~~~~~~i~nLa~~Dl~~~l~~~p~~~~~~~~~~~~~g~~~C~~~~~ 119 (139)
.+.....++.+++++|++||+++++++.++|++|+++|+++.|||++|++.++...|..+.....++|.+|+..|++..+
T Consensus 10 ~~~~~~~~~~~~~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~ 89 (315)
T 4amj_A 10 WEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTS 89 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHSSCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhchhhcchHHHHHHHHHHHHHHHHHHhccHHHHHHhcCCeeccccHHHHHHH
Confidence 36778889999999999999999999999999999999999999999999999999998888888999999999999999
Q ss_pred HhHHhhHHHHHHHHHhhccC
Q psy16860 120 FDVYFSQYRKHFNMYEVDFE 139 (139)
Q Consensus 120 ~~~~~~~~Si~~~m~~~~~~ 139 (139)
+...+..+|++ ++.++++|
T Consensus 90 ~~~~~~~~S~~-~l~~isid 108 (315)
T 4amj_A 90 LDVLCVTASIE-TLCVIAID 108 (315)
T ss_dssp HHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHH
Confidence 99999999984 55555554
No 13
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=99.67 E-value=2.5e-16 Score=123.71 Aligned_cols=97 Identities=16% Similarity=0.222 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCccccccccchhchHH
Q psy16860 41 FIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSF 120 (139)
Q Consensus 41 ~~~~~~~~~~i~~~g~~gN~lvi~v~~~~~~~~~~~~~~i~nLa~~Dl~~~l~~~p~~~~~~~~~~~~~g~~~C~~~~~~ 120 (139)
..+..+++.+++++|++||+++++++.++|++|+++|+|+.|||++|++++++..|..+.. ..+.|.++...|++..++
T Consensus 63 ~~~~~~~~~~i~~~g~~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~-~~~~~~~~~~~c~~~~~~ 141 (520)
T 3v2y_A 63 IKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLS-GATTYKLTPAQWFLREGS 141 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGGTTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cccceeeCccccchHHHH
Confidence 3788889999999999999999999999999999999999999999999999988877665 556788999999999999
Q ss_pred hHHhhHHHHHHHHHhhccC
Q psy16860 121 DVYFSQYRKHFNMYEVDFE 139 (139)
Q Consensus 121 ~~~~~~~Si~~~m~~~~~~ 139 (139)
..++.++|+ +++.++++|
T Consensus 142 ~~~~~~~S~-~~l~~isid 159 (520)
T 3v2y_A 142 MFVALSASV-FSLLAIAIE 159 (520)
T ss_dssp HHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHH
Confidence 999999998 566666654
No 14
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=99.67 E-value=1.3e-16 Score=122.83 Aligned_cols=96 Identities=30% Similarity=0.418 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCccccccccchhchHH
Q psy16860 41 FIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSF 120 (139)
Q Consensus 41 ~~~~~~~~~~i~~~g~~gN~lvi~v~~~~~~~~~~~~~~i~nLa~~Dl~~~l~~~p~~~~~~~~~~~~~g~~~C~~~~~~ 120 (139)
..+...++.+++++|++||+++++++.++|++|+++|+|+.|||++|++.+++.+|+.+.... .|..|...|++..++
T Consensus 21 ~~~~~~~~~~i~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~--~~~~~~~~C~~~~~~ 98 (488)
T 3eml_A 21 SSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST--GFCAACHGCLFIACF 98 (488)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSSHHHHHHHHHHHHHHHHHTHHHHHHHHTT--CCEECHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhheeeccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccccchHHHHHHHH
Confidence 457788899999999999999999999999999999999999999999999999998776443 688899999999999
Q ss_pred hHHhhHHHHHHHHHhhccC
Q psy16860 121 DVYFSQYRKHFNMYEVDFE 139 (139)
Q Consensus 121 ~~~~~~~Si~~~m~~~~~~ 139 (139)
..++..+|+ +++.++++|
T Consensus 99 ~~~~~~~s~-~~l~~is~d 116 (488)
T 3eml_A 99 VLVLTQSSI-FSLLAIAID 116 (488)
T ss_dssp HHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHH
Confidence 999999999 455555554
No 15
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=99.67 E-value=3.5e-16 Score=120.04 Aligned_cols=99 Identities=26% Similarity=0.422 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCccccccccchhch
Q psy16860 39 FPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWN 118 (139)
Q Consensus 39 ~~~~~~~~~~~~i~~~g~~gN~lvi~v~~~~~~~~~~~~~~i~nLa~~Dl~~~l~~~p~~~~~~~~~~~~~g~~~C~~~~ 118 (139)
..+.+...++.+++++|++||+++++++.++|++|+++|+++.|||++|++. ++..|+.+.....+.|.+|...|++..
T Consensus 123 ~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l~~~~~~ll~~LAvsDll~-~~~~p~~~~~~~~~~~~~~~~~C~~~~ 201 (434)
T 4ea3_A 123 GLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLV-LLTLPFQGTDILLGFWPFGNALCKTVI 201 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHeeeeeeecCccCchhHHHHHHHHHHHHHH-HHHhHHHHHHHHhcCCcCcccHHHHHH
Confidence 3377888899999999999999999999999999999999999999999998 677898888888889999999999999
Q ss_pred HHhHHhhHHHHHHHHHhhccC
Q psy16860 119 SFDVYFSQYRKHFNMYEVDFE 139 (139)
Q Consensus 119 ~~~~~~~~~Si~~~m~~~~~~ 139 (139)
++..++..+|++ ++.++++|
T Consensus 202 ~~~~~~~~~S~~-~l~~isid 221 (434)
T 4ea3_A 202 AIDYYNMFTSTF-TLTAMSVD 221 (434)
T ss_dssp HHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHH
Confidence 999999999995 44455543
No 16
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=99.66 E-value=5.8e-16 Score=118.18 Aligned_cols=99 Identities=30% Similarity=0.424 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCccccccccchhc
Q psy16860 38 IFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVW 117 (139)
Q Consensus 38 ~~~~~~~~~~~~~i~~~g~~gN~lvi~v~~~~~~~~~~~~~~i~nLa~~Dl~~~l~~~p~~~~~~~~~~~~~g~~~C~~~ 117 (139)
.....+...++.+++++|++||+++++++.++|++|+++|+++.|||++|++.+++.+|+.+... ..|..|...|++.
T Consensus 28 ~~~~~~~~~i~~~i~~~gi~gN~~vl~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~~p~~~~~~--~~~~~~~~~C~~~ 105 (447)
T 4eiy_A 28 IMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS--TGFCAACHGCLFI 105 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHH--TTCEEEHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccCccHHHHH
Confidence 34467888899999999999999999999999999999999999999999999999999877643 3577799999999
Q ss_pred hHHhHHhhHHHHHHHHHhhccC
Q psy16860 118 NSFDVYFSQYRKHFNMYEVDFE 139 (139)
Q Consensus 118 ~~~~~~~~~~Si~~~m~~~~~~ 139 (139)
.++..++..+|+ +++.++++|
T Consensus 106 ~~~~~~~~~~S~-~~l~~is~d 126 (447)
T 4eiy_A 106 ACFVLVLTQSSI-FSLLAIAID 126 (447)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHH
Confidence 999999999998 455555544
No 17
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=99.65 E-value=3.6e-16 Score=122.38 Aligned_cols=99 Identities=36% Similarity=0.716 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCccccccccchhchH
Q psy16860 40 PFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNS 119 (139)
Q Consensus 40 ~~~~~~~~~~~i~~~g~~gN~lvi~v~~~~~~~~~~~~~~i~nLa~~Dl~~~l~~~p~~~~~~~~~~~~~g~~~C~~~~~ 119 (139)
.......++.+++++|++||+++++++.++|++|+++|++++|||++|++.+++.+|..+.....+.|.+|...|++..+
T Consensus 181 ~~~~~~i~~~ii~~~gi~gN~lvi~vi~~~~~lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~ 260 (514)
T 3sn6_R 181 WVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTS 260 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHTSCCSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhheecccccccHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCeeCCcchhhhHHH
Confidence 35677888999999999999999999999999999999999999999999999999999988888999999999999999
Q ss_pred HhHHhhHHHHHHHHHhhccC
Q psy16860 120 FDVYFSQYRKHFNMYEVDFE 139 (139)
Q Consensus 120 ~~~~~~~~Si~~~m~~~~~~ 139 (139)
+..++..+|++ ++.++++|
T Consensus 261 l~~~~~~~S~~-~l~~isid 279 (514)
T 3sn6_R 261 IDVLCVTASIE-TLCVIAVD 279 (514)
T ss_dssp HHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHH
Confidence 99999999984 55566554
No 18
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=99.64 E-value=6.9e-16 Score=118.53 Aligned_cols=99 Identities=24% Similarity=0.451 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCchHHHHHHHHHHHHHHHHHhh-hHHHHHHHhcCccccccccchhch
Q psy16860 40 PFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCV-MPFNAIVSLTDEWYFGYFMCDVWN 118 (139)
Q Consensus 40 ~~~~~~~~~~~i~~~g~~gN~lvi~v~~~~~~~~~~~~~~i~nLa~~Dl~~~l~~-~p~~~~~~~~~~~~~g~~~C~~~~ 118 (139)
.......++.+++++|++||+++++++.|+|++|++.|++++|||++|++.+++. +|..+.....++|.+|...|++..
T Consensus 33 ~~~~~~i~~~ii~i~gi~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~ 112 (448)
T 2z73_A 33 VYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYG 112 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHHTTSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHHhccHHHHHHhcCCccCCHHHHHHHH
Confidence 4667778899999999999999999999999999999999999999999998874 888888888889999999999999
Q ss_pred HHhHHhhHHHHHHHHHhhccC
Q psy16860 119 SFDVYFSQYRKHFNMYEVDFE 139 (139)
Q Consensus 119 ~~~~~~~~~Si~~~m~~~~~~ 139 (139)
++...+..+|++ ++.++++|
T Consensus 113 ~~~~~~~~~S~~-~l~~isid 132 (448)
T 2z73_A 113 FIGGIFGFMSIM-TMAMISID 132 (448)
T ss_dssp HHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHH
Confidence 999999999985 45555543
No 19
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A
Probab=97.33 E-value=1.2e-05 Score=45.83 Aligned_cols=31 Identities=16% Similarity=0.326 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhccCCCC
Q psy16860 43 IKGMLMCFIIITAILGNLLVIISVIKHRKLR 73 (139)
Q Consensus 43 ~~~~~~~~i~~~g~~gN~lvi~v~~~~~~~~ 73 (139)
....+|.+++++|++||++++|++.++|.-+
T Consensus 30 ~lp~~Y~lvFvlGl~GN~lvl~v~~~~~~~~ 60 (64)
T 2lot_A 30 LIPAIYMLVFLLGTTGNGLVLWTVFRKKGHH 60 (64)
T ss_dssp SSHHHHHHTTTTTTTSSSSHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHhhhhhheeeeeEecccc
Confidence 6778899999999999999999999887533
No 20
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=42.69 E-value=26 Score=17.17 Aligned_cols=18 Identities=11% Similarity=0.266 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16860 42 IIKGMLMCFIIITAILGN 59 (139)
Q Consensus 42 ~~~~~~~~~i~~~g~~gN 59 (139)
+..+.+++.+++.|.+.|
T Consensus 9 y~vV~ffvsLFiFGfLsn 26 (38)
T 3arc_I 9 YIVVTFFVLLFVFGFLSG 26 (38)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHccccCC
Confidence 445555666666666554
No 21
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=40.92 E-value=37 Score=17.29 Aligned_cols=10 Identities=0% Similarity=0.245 Sum_probs=4.1
Q ss_pred hHHHhhccCC
Q psy16860 62 VIISVIKHRK 71 (139)
Q Consensus 62 vi~v~~~~~~ 71 (139)
.++.++|+|+
T Consensus 29 ~~~~~~RRRr 38 (44)
T 2l2t_A 29 TFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHhhhhh
Confidence 3334444443
No 22
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=24.56 E-value=78 Score=16.00 Aligned_cols=9 Identities=22% Similarity=0.320 Sum_probs=3.7
Q ss_pred HHHhhccCC
Q psy16860 63 IISVIKHRK 71 (139)
Q Consensus 63 i~v~~~~~~ 71 (139)
++.++|+|+
T Consensus 31 ~~~~~RRr~ 39 (44)
T 2ks1_B 31 IGLFMRRRH 39 (44)
T ss_dssp HHHHHHTTT
T ss_pred HHHHhhhhH
Confidence 334444443
Done!