RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16860
(139 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 61.2 bits (149), Expect = 4e-12
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 66 VIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFS 125
+++ +KLR TN F+++LA ADLL L + P+ + +W FG +C + V
Sbjct: 3 ILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVVNG 62
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 41.5 bits (97), Expect = 4e-05
Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 12/106 (11%)
Query: 11 YTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHR 70
Y NI Y N N ++P+ S +I IF II I + GN II ++ +
Sbjct: 77 YENNITYELINIKNKCMYPSISE-YIKIFYIII--------FILGLFGNAA-IIMILFCK 126
Query: 71 KLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDV 116
K++ IT+ ++ +LA +DL+ + PF I + D+W FG FMC V
Sbjct: 127 KIKTITDIYIFNLAISDLIFVI-DFPF-IIYNEFDQWIFGDFMCKV 170
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 34.8 bits (80), Expect = 0.009
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 3 NTIYNSLNYTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLV 62
NT + Y Y ++++ L T + ++ I ++GN++V
Sbjct: 8 NTTIENTTDYYYDTYYDEDYADCDLNIGYDTNSTILI------VVYSTIFFFGLVGNIIV 61
Query: 63 IISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMC 114
I V+ K++ + ++++LA +DLL + +PF + +W FG F C
Sbjct: 62 IY-VLTKTKIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILFQWSFGEFAC 111
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 27.9 bits (63), Expect = 1.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 52 IITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAI 100
+ I GN+++II K +KLR +Y + ADLL + F +
Sbjct: 1 SVIGIFGNVIMIILTFKKKKLRSKCSYLICVQCLADLLCLSGEIIFVVL 49
>gnl|CDD|226159 COG3633, SstT, Na+/serine symporter [Amino acid transport and
metabolism].
Length = 407
Score = 28.1 bits (63), Expect = 1.7
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 38 IFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSL-AFADLLVALCVM 95
+F + +G L+ I+I +LG LL IIS + ++ FV +L A A +LV + VM
Sbjct: 7 LFRLLARGSLVKQILIGLVLGILLAIISPPAAEAVGLLGTLFVGALKAVAPVLVFILVM 65
>gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated.
Length = 405
Score = 27.3 bits (61), Expect = 2.6
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 15/93 (16%)
Query: 31 NSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKH---RKLRIITNY------FVV 81
N + IH F FI+ G ++ + + ++H + + +I NY +V
Sbjct: 123 NPSYPIHAFGFIMAGGVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVNYPSNPTAYVA 182
Query: 82 SLAFADLLVALCVMPFNAIVSLTD----EWYFG 110
L F +VA + I+ L+D E YF
Sbjct: 183 DLDFYKDVVAFAKK--HDIIILSDLAYSEIYFD 213
>gnl|CDD|215871 pfam00346, Complex1_49kDa, Respiratory-chain NADH dehydrogenase, 49
Kd subunit.
Length = 272
Score = 26.2 bits (58), Expect = 7.3
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 23 SNTSLFP------TNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIIS 65
S+ S FP H+ I + +G L+ ++ AILG++ ++
Sbjct: 222 SDGSTFPYRWKIRAPGFAHLQILDHLSRGHLLADLV--AILGSIDIVFG 268
>gnl|CDD|216886 pfam02123, RdRP_4, Viral RNA-directed RNA-polymerase. This family
includes RNA-dependent RNA polymerase proteins (RdRPs)
from Luteovirus, Totivirus and Rotavirus.
Length = 421
Score = 26.2 bits (58), Expect = 7.5
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 9/74 (12%)
Query: 67 IKHRKLRIITNYFVVSLAFADLLVALC---VMPFNAIVSLTDEWYFGYFMCDVWNSFDVY 123
++H K R+I + +VS + L+ P ++L + F +
Sbjct: 193 LEHGKTRLIFSVDLVSYLVFEYLLGPQEKRWSPSKVGLNLPGDAQVLGFA------TRLA 246
Query: 124 FSQYRKHFNMYEVD 137
M +
Sbjct: 247 GKHRGGVALMTDYS 260
>gnl|CDD|227500 COG5173, SEC6, Exocyst complex subunit SEC6 [Intracellular
trafficking and secretion].
Length = 742
Score = 26.1 bits (57), Expect = 8.4
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 11/97 (11%)
Query: 47 LMCFIIITAILGNLLVIISVIKHRKLR-----IITNYFVVSLAFADLLVAL----CVMPF 97
L IT++ N +I+ + + + A L C
Sbjct: 500 LKIAQYITSLPSNTFELITSEYENDEVKELGKTVDGFIDILKASNTFLAEFIIYDCQPAI 559
Query: 98 NAIVSLTDEWYFGYFMCDVWNSFDVYFSQYRKHFNMY 134
+ I TDEWY G + ++ Y S Y+ + Y
Sbjct: 560 DKI--FTDEWYGGSVTKVIVDTLQDYLSDYQNTMSEY 594
>gnl|CDD|111000 pfam02057, Glyco_hydro_59, Glycosyl hydrolase family 59.
Length = 669
Score = 26.1 bits (57), Expect = 8.7
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 50 FIIITAILGNLLVIISVIKHRK---LRIITNYFVVSLAFA 86
++ +T LGNL +II + H+ +R YF VS FA
Sbjct: 354 YVALTDGLGNLTIIIETMSHKHSMCIRPFLPYFNVSHQFA 393
>gnl|CDD|219176 pfam06785, UPF0242, Uncharacterized protein family (UPF0242).
Length = 401
Score = 26.0 bits (57), Expect = 9.0
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 70 RKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSQYRK 129
+K+ + YF +L+ L PF + + ++GYF+ V +S +F+ R+
Sbjct: 6 KKIHYCSRYFHYLPPVVAILLPLVCWPFLSE----SQKWYGYFVFPVISSLGWFFAIGRR 61
>gnl|CDD|219640 pfam07916, TraG_N, TraG-like protein, N-terminal region. The
bacterial sequences found in this family are similar to
the N-terminal region of the TraG protein. This is a
membrane-spanning protein, with three predicted
transmembrane segments and two periplasmic regions. TraG
protein is known to be essential for DNA transfer in the
process of conjugation, with the N-terminal portion
being required for F pilus assembly. The protein is
thought to interact with the periplasmic domain of TraN
to stabilise mating-cell interactions.
Length = 462
Score = 25.8 bits (57), Expect = 9.1
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 50 FIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYF 109
I I A LG L I LR I N+ +V+L L+V ++P V +TD +
Sbjct: 30 LIRIAAWLGVLAEGIDEGNKGDLRRIENWLLVAL----LVVMFLLVPKTT-VQITDRTFS 84
Query: 110 G 110
G
Sbjct: 85 G 85
>gnl|CDD|216782 pfam01914, MarC, MarC family integral membrane protein. Integral
membrane protein family that includes the antibiotic
resistance protein MarC. These proteins may be
transporters.
Length = 203
Score = 25.7 bits (57), Expect = 9.4
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 13/76 (17%)
Query: 39 FPFIIKGMLMCFIIITAILGNLLVIISVIKH--RKLRIITNYFVVSLAFADLLVALCVMP 96
FI L F II I GN+ V IS+ ++ + R +AF LL+ L
Sbjct: 1 LKFIFSAFLSLFAIINPI-GNVPVFISLTENYPAEERKRIILRASIIAFLILLLFL---- 55
Query: 97 FNAIVSLTDEWYFGYF 112
+ + F
Sbjct: 56 ------VFGKLILKLF 65
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.332 0.143 0.451
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,133,836
Number of extensions: 659209
Number of successful extensions: 1305
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1283
Number of HSP's successfully gapped: 135
Length of query: 139
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 52
Effective length of database: 7,078,804
Effective search space: 368097808
Effective search space used: 368097808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 54 (24.5 bits)