RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16860
(139 letters)
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Length = 348
Score = 56.1 bits (134), Expect = 7e-11
Identities = 24/122 (19%), Positives = 46/122 (37%)
Query: 13 YNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKL 72
+ + +++ S F + F + M +I+ N L + ++H+KL
Sbjct: 9 FYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKL 68
Query: 73 RIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSQYRKHFN 132
R NY +++LA ADL + SL + FG C++ F +
Sbjct: 69 RTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSL 128
Query: 133 MY 134
+
Sbjct: 129 VV 130
>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein
import protein mas5 (Hsp40, Ydj1), C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 74
Score = 24.3 bits (52), Expect = 3.1
Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 7 NSLNYTYNINYTSTNFSNTSLFPTNSTIH-IHIFPFIIKGMLMCFI-----IITAILGNL 60
+ + + + T+ N I +H+ P + G + F I G++
Sbjct: 5 KDIKHEISASLEELYKGRTAKLALNRKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDV 64
Query: 61 LVIISVIKHR 70
+ I+S H+
Sbjct: 65 VFIVSERPHK 74
>d2nysa1 b.136.1.2 (A:3-119) Uncharacterized protein AGR_C_3712p
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 117
Score = 24.6 bits (54), Expect = 3.3
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 66 VIKH--RKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTD 105
VI+H +++ F + L+F+D L V+P+NAI D
Sbjct: 65 VIQHQFWDMKVTETGFEIGLSFSDTPEKL-VIPYNAIRGFYD 105
>d1qvba_ c.1.8.4 (A:) beta-Glycosidase {Archaeon Thermosphaera
aggregans [TaxId: 54254]}
Length = 481
Score = 24.8 bits (53), Expect = 4.6
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 109 FGYFMCDVWNSFDVY--FSQYRKHFNMYEVDFE 139
GY W+ D Y +R+ F + VDF+
Sbjct: 419 KGYL---HWSLTDNYEWAQGFRQKFGLVMVDFK 448
>d1e4ia_ c.1.8.4 (A:) Beta-glucosidase A {Bacillus polymyxa [TaxId:
1406]}
Length = 447
Score = 24.8 bits (53), Expect = 4.9
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 5/33 (15%)
Query: 109 FGYFMCDVWNSFDVY--FSQYRKHFNMYEVDFE 139
GY W+ D + Y F M VDF
Sbjct: 392 KGYM---AWSLLDNFEWAEGYNMRFGMIHVDFR 421
>d1wcga1 c.1.8.4 (A:3-464) Thioglucosidase {Cabbage aphid
(Brevicoryne brassicae) [TaxId: 69196]}
Length = 462
Score = 24.4 bits (52), Expect = 5.7
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 109 FGYFMCDVWNSFDVY--FSQYRKHFNMYEVDFE 139
GY VW+ D + F Y HF + ++DF
Sbjct: 409 IGYT---VWSLLDNFEWFYGYSIHFGLVKIDFN 438
>d1e4mm_ c.1.8.4 (M:) Plant beta-glucosidase (myrosinase) {White
mustard (Sinapis alba) [TaxId: 3728]}
Length = 499
Score = 24.4 bits (52), Expect = 6.0
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 5/33 (15%)
Query: 109 FGYFMCDVWNSFDVY--FSQYRKHFNMYEVDFE 139
GY W D Y + F + +D+
Sbjct: 450 KGYL---AWALGDNYEFNKGFTVRFGLSYIDWN 479
>d1qoxa_ c.1.8.4 (A:) Beta-glucosidase A {Bacillus circulans, subsp.
alkalophilus [TaxId: 1397]}
Length = 449
Score = 24.4 bits (52), Expect = 6.2
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 109 FGYFMCDVWNSFDVY--FSQYRKHFNMYEVDFE 139
GY W+ D + Y F + VD++
Sbjct: 396 KGYM---EWSLMDNFEWAEGYGMRFGLVHVDYD 425
>d1uwsa_ c.1.8.4 (A:) beta-Glycosidase {Archaeon Sulfolobus
solfataricus [TaxId: 2287]}
Length = 489
Score = 24.5 bits (52), Expect = 6.5
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Query: 109 FGYFMCDVWNSFDVY--FSQYRKHFNMYEVDFE 139
GY W+ D Y S + F + +VD+
Sbjct: 420 RGYL---HWSLADNYEWASGFSMRFGLLKVDYN 449
>d1pbga_ c.1.8.4 (A:) 6-phospho-beta-D-galactosidase, PGAL
{Lactococcus lactis [TaxId: 1358]}
Length = 468
Score = 24.4 bits (52), Expect = 7.0
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 109 FGYFMCDVWNSFDVY--FSQYRKHFNMYEVDFE 139
GYF +W+ DV+ + Y K + ++ VDF+
Sbjct: 416 KGYF---IWSLMDVFSWSNGYEKRYGLFYVDFD 445
>d1gnxa_ c.1.8.4 (A:) Beta-glucosidase A {Streptomyces sp. [TaxId:
1931]}
Length = 464
Score = 24.4 bits (52), Expect = 7.3
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Query: 109 FGYFMCDVWNSFDVY--FSQYRKHFNMYEVDFE 139
GYF +W+ D + Y K F VD+
Sbjct: 411 RGYF---LWSLLDNFEWAHGYSKRFGAVYVDYP 440
>d1cbga_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Creeping
white clover (Trifolium repens) [TaxId: 3899]}
Length = 490
Score = 24.4 bits (52), Expect = 7.4
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 109 FGYFMCDVWNSFDVY--FSQYRKHFNMYEVDFE 139
GYF W+ FD S Y F + VDF+
Sbjct: 441 KGYF---AWSLFDNMEWDSGYTVRFGLVFVDFK 470
>d1v02a_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Sorghum
bicolor [TaxId: 4558]}
Length = 484
Score = 24.0 bits (51), Expect = 8.3
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 109 FGYFMCDVWNSFDVY--FSQYRKHFNMYEVDFE 139
GYF W+ D + S Y + F + VD E
Sbjct: 436 RGYF---AWSLLDNFEWSSGYTERFGIVYVDRE 465
>d1ug6a_ c.1.8.4 (A:) Beta-glucosidase A {Thermus thermophilus
[TaxId: 274]}
Length = 426
Score = 24.0 bits (51), Expect = 9.7
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 109 FGYFMCDVWNSFDVY--FSQYRKHFNMYEVDFE 139
GYF VW+ D + Y + F +Y VDF
Sbjct: 377 RGYF---VWSLMDNFEWAFGYTRRFGLYYVDFP 406
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.332 0.143 0.451
Gapped
Lambda K H
0.267 0.0418 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 551,267
Number of extensions: 23528
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 27
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 48 (23.1 bits)