RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16861
(382 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 128 bits (325), Expect = 4e-35
Identities = 49/160 (30%), Positives = 80/160 (50%)
Query: 66 VIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFS 125
+++ +KLR TN F+++LA ADLL L + P+ + +W FG +C + V
Sbjct: 3 ILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVVNG 62
Query: 126 TASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTP 185
ASIL L IS+DRY AIV PL+Y I +++ VW+L ++S P++ W T
Sbjct: 63 YASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLRTV 122
Query: 186 DHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTM 225
+ + Y L+S+ + F +P V++
Sbjct: 123 EEGNVTTCLIDFPEESTKRSYTLLSTLLGFVLPLLVILVC 162
Score = 40.0 bits (94), Expect = 0.001
Identities = 15/82 (18%), Positives = 35/82 (42%)
Query: 232 LLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIP 291
+++ VW+L ++S P++ W T + + Y L+S+ + F +P
Sbjct: 96 KVLILVVWVLALLLSLPPLLFSWLRTVEEGNVTTCLIDFPEESTKRSYTLLSTLLGFVLP 155
Query: 292 GFVMVTMYYRIYKEAVRQRIAL 313
V++ Y I + ++ +
Sbjct: 156 LLVILVCYTLILRTLRKRARSG 177
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 65.6 bits (160), Expect = 6e-12
Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 15/188 (7%)
Query: 3 NTIYNSLNYTYNINYTSTNFS---NTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGN 59
NT + Y Y +++ + TNSTI I ++ I ++GN
Sbjct: 8 NTTIENTTDYYYDTYYDEDYADCDLNIGYDTNSTILI---------VVYSTIFFFGLVGN 58
Query: 60 LLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNS 119
++VI V+ K++ + ++++LA +DLL + +PF + +W FG F C + +
Sbjct: 59 IIVIY-VLTKTKIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILFQWSFGEFACKIVSG 116
Query: 120 FDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIML 179
S+ + +SVDRY AIV P++ I ++ +WI+ II TPI+
Sbjct: 117 LYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWII-SIIETTPILF 175
Query: 180 GWYTTPDH 187
+ T DH
Sbjct: 176 VYTTKKDH 183
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 59.6 bits (144), Expect = 7e-10
Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 12/163 (7%)
Query: 11 YTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHR 70
Y NI Y N N ++P+ S +I IF II I + GN II ++ +
Sbjct: 77 YENNITYELINIKNKCMYPSISE-YIKIFYIII--------FILGLFGNAA-IIMILFCK 126
Query: 71 KLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASIL 130
K++ IT+ ++ +LA +DL+ + PF I + D+W FG FMC V ++ +++
Sbjct: 127 KIKTITDIYIFNLAISDLIFVI-DFPF-IIYNEFDQWIFGDFMCKVISASYYIGFFSNMF 184
Query: 131 HLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIIS 173
+ +S+DRY+AI+ P+ + N +++ WIL II+
Sbjct: 185 LITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIIT 227
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 44.3 bits (105), Expect = 4e-06
Identities = 15/23 (65%), Positives = 16/23 (69%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K KK KKKKKKKKKK K K+
Sbjct: 13 KGKKIDVKKKKKKKKKKNKSKEE 35
Score = 42.4 bits (100), Expect = 2e-05
Identities = 15/23 (65%), Positives = 15/23 (65%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K K KK KKKKKKKKKK K
Sbjct: 11 KLKGKKIDVKKKKKKKKKKNKSK 33
Score = 41.3 bits (97), Expect = 5e-05
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
K KKKKKKKKKK K K++ +
Sbjct: 14 GKKIDVKKKKKKKKKKNKSKEEVVT 38
Score = 41.3 bits (97), Expect = 5e-05
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
KKKKKKKKKK K K++ +K+
Sbjct: 20 KKKKKKKKKKNKSKEEVVTEKEE 42
Score = 40.9 bits (96), Expect = 7e-05
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 354 SVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
KKKKKKKKK K K++ +K++
Sbjct: 15 KKIDVKKKKKKKKKKNKSKEEVVTEKEEE 43
Score = 38.6 bits (90), Expect = 4e-04
Identities = 14/24 (58%), Positives = 14/24 (58%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
K K K KK KKKKKKKKK
Sbjct: 6 VGGKLKLKGKKIDVKKKKKKKKKK 29
Score = 33.2 bits (76), Expect = 0.035
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
KKKKKKK K K++ +K++++
Sbjct: 23 KKKKKKKNKSKEEVVTEKEEEEK 45
Score = 33.2 bits (76), Expect = 0.041
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
KKKKKK K K++ +K++++KS
Sbjct: 24 KKKKKKNKSKEEVVTEKEEEEKS 46
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 45.0 bits (107), Expect = 7e-06
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
AKK+ K++KKK+KKKKKKK KK +
Sbjct: 84 AKKRAKRQKKKQKKKKKKKAKKGN 107
Score = 41.6 bits (98), Expect = 1e-04
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
K++KKK+KKKKKKK KK KK
Sbjct: 86 KRAKRQKKKQKKKKKKKAKKGNKK 109
Score = 40.0 bits (94), Expect = 4e-04
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K KK+ K++KKK+KKKKKKK
Sbjct: 82 KTAKKRAKRQKKKQKKKKKKKAK 104
Score = 39.3 bits (92), Expect = 6e-04
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
+K KK+ K++KKK+KKKKKKK
Sbjct: 80 EEKTAKKRAKRQKKKQKKKKKKK 102
Score = 38.1 bits (89), Expect = 0.002
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
++K KK+ K++KKK+KKKKKK
Sbjct: 79 DEEKTAKKRAKRQKKKQKKKKKK 101
Score = 38.1 bits (89), Expect = 0.002
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
KKK+KKKKKKK KK KK++K+
Sbjct: 92 KKKQKKKKKKKAKKGNKKEEKEG 114
Score = 35.8 bits (83), Expect = 0.009
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 362 KKKKKKKKKKKKKKKKKKKKS 382
+K KK+ K++KKK+KKKKK
Sbjct: 81 EKTAKKRAKRQKKKQKKKKKK 101
Score = 35.0 bits (81), Expect = 0.019
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
KK+KKKKKKK KK KK++K+ S
Sbjct: 93 KKQKKKKKKKAKKGNKKEEKEGS 115
Score = 34.6 bits (80), Expect = 0.024
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKKS 382
KKKKKKK KK KK++K+ K S
Sbjct: 93 KKQKKKKKKKAKKGNKKEEKEGSKSS 118
Score = 33.9 bits (78), Expect = 0.050
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
+K ++K KK+ K++KKK+KKK
Sbjct: 75 KKRKDEEKTAKKRAKRQKKKQKKK 98
Score = 31.9 bits (73), Expect = 0.20
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
KKKKKK KK KK++K+ K
Sbjct: 95 QKKKKKKKAKKGNKKEEKEGSKSSE 119
Score = 31.6 bits (72), Expect = 0.27
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 9/32 (28%)
Query: 360 KKKKKKK---------KKKKKKKKKKKKKKKS 382
++K+++K KK+ K++KKK+KKKK
Sbjct: 69 QQKREEKKRKDEEKTAKKRAKRQKKKQKKKKK 100
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 46.5 bits (111), Expect = 1e-05
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 345 PVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
P + S + AK+ +KK+K+K+K K KK+ +
Sbjct: 383 PSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTK 420
Score = 41.1 bits (97), Expect = 7e-04
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
K+K K KK+ + K K++K S
Sbjct: 406 EKEKPKVKKRHRDTKNIGKRRKPS 429
Score = 41.1 bits (97), Expect = 8e-04
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K+K+K+K K KK+ + K K
Sbjct: 403 KEKEKEKPKVKKRHRDTKNIGK 424
Score = 41.1 bits (97), Expect = 8e-04
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 345 PVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
P T+ +KK K+ +KK+K+K+K K KK
Sbjct: 378 PKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKK 414
Score = 40.7 bits (96), Expect = 0.001
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
KK+K+K+K K KK+ + K
Sbjct: 401 EKKEKEKEKPKVKKRHRDTKNIG 423
Score = 39.9 bits (94), Expect = 0.002
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K+K+K K KK+ + K K++
Sbjct: 404 EKEKEKPKVKKRHRDTKNIGKRR 426
Score = 39.9 bits (94), Expect = 0.002
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
+K+K K KK+ + K K++K
Sbjct: 405 KEKEKPKVKKRHRDTKNIGKRRK 427
Score = 38.0 bits (89), Expect = 0.007
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
+K K KK+ + K K++K
Sbjct: 408 EKPKVKKRHRDTKNIGKRRKPSG 430
Score = 36.5 bits (85), Expect = 0.022
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
K K KK+ + K K++K +
Sbjct: 408 EKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 34.9 bits (81), Expect = 0.064
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K KK+ + K K++K S
Sbjct: 410 PKVKKRHRDTKNIGKRRKPSGTS 432
Score = 29.9 bits (68), Expect = 2.3
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 358 NAKKKKKKKKKKKKKKKKKKK 378
KK+ + K K++K
Sbjct: 411 KVKKRHRDTKNIGKRRKPSGT 431
Score = 28.8 bits (65), Expect = 5.4
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 11/36 (30%)
Query: 357 LNAKKKKKKKKKKKK-----------KKKKKKKKKK 381
L K K +KK K KK+K+K+K K
Sbjct: 376 LRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPK 411
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 44.2 bits (105), Expect = 3e-05
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
N KK+K KK KKKKK KKK +
Sbjct: 183 NLKKRKDDKKNKKKKKAKKKGRIL 206
Score = 42.3 bits (100), Expect = 1e-04
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 362 KKKKKKKKKKKKKKKKKKKKS 382
KK+K KK KKKKK KKK +
Sbjct: 185 KKRKDDKKNKKKKKAKKKGRI 205
Score = 39.6 bits (93), Expect = 0.001
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKK 379
L +K KK KKKKK KKK +
Sbjct: 184 LKKRKDDKKNKKKKKAKKKGRIL 206
Score = 38.4 bits (90), Expect = 0.003
Identities = 10/25 (40%), Positives = 21/25 (84%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
L +++K++++K +KK+K+K+ KKK
Sbjct: 8 LEQRRRKREQRKARKKQKRKEAKKK 32
Score = 36.9 bits (86), Expect = 0.009
Identities = 9/24 (37%), Positives = 20/24 (83%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
++K++++K +KK+K+K+ KKK+
Sbjct: 10 QRRRKREQRKARKKQKRKEAKKKE 33
Score = 36.1 bits (84), Expect = 0.013
Identities = 9/22 (40%), Positives = 19/22 (86%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
+K++++K +KK+K+K+ KKK+
Sbjct: 13 RKREQRKARKKQKRKEAKKKED 34
Score = 36.1 bits (84), Expect = 0.015
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Query: 351 RTHSVTLNAKKKKKKK-----KKKKKKKKKKKKKKKS 382
R V K +++KK KK+K KK KKKKK
Sbjct: 165 RKEKVE-KKKAERQKKREENLKKRKDDKKNKKKKKAK 200
Score = 35.4 bits (82), Expect = 0.027
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K++++K +KK+K+K+ KKK+
Sbjct: 14 KREQRKARKKQKRKEAKKKEDAQ 36
Score = 35.4 bits (82), Expect = 0.027
Identities = 10/23 (43%), Positives = 19/23 (82%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
+++K +KK+K+K+ KKK+ +KS
Sbjct: 16 EQRKARKKQKRKEAKKKEDAQKS 38
Score = 35.0 bits (81), Expect = 0.038
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
KK K+K+K+KKK KK+ K++K
Sbjct: 145 KKALKRKEKQKKKSKKEWKERK 166
Score = 34.6 bits (80), Expect = 0.043
Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 30/56 (53%)
Query: 356 TLNAKKKKKKKKKK------------------------------KKKKKKKKKKKK 381
L K+K+KKK KK KK KKKKK KKK
Sbjct: 147 ALKRKEKQKKKSKKEWKERKEKVEKKKAERQKKREENLKKRKDDKKNKKKKKAKKK 202
Score = 33.8 bits (78), Expect = 0.081
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKK 380
A K+K+K+KKK KK+ K++K+K
Sbjct: 146 KALKRKEKQKKKSKKEWKERKEK 168
Score = 33.0 bits (76), Expect = 0.13
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 361 KKKKKKKKKKKKKKKKKKKKKS 382
KK K+K+K+KKK KK+ K++
Sbjct: 145 KKALKRKEKQKKKSKKEWKERK 166
Score = 33.0 bits (76), Expect = 0.14
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKK 380
++K +KK+K+K+ KKK+ +K
Sbjct: 16 EQRKARKKQKRKEAKKKEDAQK 37
Score = 31.9 bits (73), Expect = 0.33
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
K +KK+K+K+ KKK+ +K +
Sbjct: 18 RKARKKQKRKEAKKKEDAQKSEAE 41
Score = 31.5 bits (72), Expect = 0.47
Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 17/94 (18%)
Query: 304 KEAVRQRIALSRTSSN-IVSPVIQSTSEGSAV------VTVSDTPQSTPVTR-------- 348
K+ Q+ + S + E + V +D Q+ +
Sbjct: 31 KKEDAQKSEAEEVKNEENKSKKKAAPIENAEGNIVFSKVEFADGEQAKKDLKLKKKKKKK 90
Query: 349 --NVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKK 380
+ + L A+KKK ++ + K + ++K+K
Sbjct: 91 KTDYKQLLKKLEARKKKLEELDEDKAAEIEEKEK 124
Score = 30.7 bits (70), Expect = 0.90
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 361 KKKKKKKKKKKKKKKKKKKKKS 382
+KK+K+K+ KKK+ +K + +
Sbjct: 21 RKKQKRKEAKKKEDAQKSEAEE 42
Score = 30.4 bits (69), Expect = 1.3
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 357 LNAKKKKKKKKKKKKK------KKKKKKKKK 381
K KKKKKKKK KK + +KKK
Sbjct: 77 AKKDLKLKKKKKKKKTDYKQLLKKLEARKKK 107
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 43.6 bits (103), Expect = 5e-05
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 330 EGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
S + + S+T + + + V KK+KKKKK+ KK+KK+KK KK+
Sbjct: 124 PPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEK 176
Score = 41.2 bits (97), Expect = 3e-04
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 327 STSEGSAVVTVSDTPQSTPVTR--NVRTHSVTLNAKKKKKKKKKKKK-------KKKKKK 377
S SE S T + + V K+KK+KK KK+K KKKKKK
Sbjct: 130 SESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKK 189
Query: 378 KKKK 381
KKKK
Sbjct: 190 KKKK 193
Score = 37.8 bits (88), Expect = 0.004
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
KKKKK+ KK+KK+KK KK+K
Sbjct: 156 EKKKKKEVKKEKKEKKDKKEKMVE 179
Score = 37.0 bits (86), Expect = 0.008
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 339 DTPQSTPV-----TRNVRTHSVTLNAKKKKKKKKKKKKKK--KKKKKKKKS 382
D P S + T V A+ ++++KK+KKKKK KK+KK+KK
Sbjct: 122 DGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKD 172
Score = 36.2 bits (84), Expect = 0.012
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
KKKK+ KK+KK+KK KK+K +
Sbjct: 156 EKKKKKEVKKEKKEKKDKKEKMVEP 180
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 41.6 bits (98), Expect = 1e-04
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
AK+KK+KKKKKKKKKKK KK
Sbjct: 109 AKQKKQKKKKKKKKKKKTSKKAAK 132
Score = 40.4 bits (95), Expect = 2e-04
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
K+KKKKKKKKKKK KK KKK
Sbjct: 112 KKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 40.4 bits (95), Expect = 3e-04
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
+K K+KK+KKKKKKKKKKK K
Sbjct: 106 KEKAKQKKQKKKKKKKKKKKTSKK 129
Score = 40.1 bits (94), Expect = 3e-04
Identities = 17/24 (70%), Positives = 20/24 (83%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
K+K K+KK+KKKKKKKKKKK S
Sbjct: 104 VLKEKAKQKKQKKKKKKKKKKKTS 127
Score = 39.7 bits (93), Expect = 4e-04
Identities = 17/28 (60%), Positives = 20/28 (71%)
Query: 355 VTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
V K+K K+KK+KKKKKKKKKKK
Sbjct: 101 VKQVLKEKAKQKKQKKKKKKKKKKKTSK 128
Score = 39.7 bits (93), Expect = 4e-04
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
L K K+KK+KKKKKKKKKKK KK
Sbjct: 105 LKEKAKQKKQKKKKKKKKKKKTSKK 129
Score = 39.7 bits (93), Expect = 5e-04
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 346 VTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKK 380
V + ++ + KKKKKKKKKKK KK KKKK
Sbjct: 101 VKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 38.9 bits (91), Expect = 7e-04
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
+KK+KKKKKKKKKKK KK K
Sbjct: 109 AKQKKQKKKKKKKKKKKTSKKAAK 132
Score = 38.9 bits (91), Expect = 8e-04
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
+KKKKKKKKKKK KK KKKK
Sbjct: 112 KKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 28.5 bits (64), Expect = 3.5
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
L ++K K+ K+K K+KK+KKKK
Sbjct: 94 LVEEQKIVKQVLKEKAKQKKQKKKK 118
>gnl|CDD|220611 pfam10169, Laps, Learning-associated protein. This is a family of
121-amino acid secretory proteins. Laps functions in the
regulation of neuronal cell adhesion and/or movement and
synapse attachment. Laps binds to the ApC/EBP (Aplysia
CCAAT/enhancer binding protein) promoter and activates
the transcription of ApC/EBP mRNA.
Length = 124
Score = 41.4 bits (97), Expect = 1e-04
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
Query: 347 TRNVRT-------HSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
RN +T + +N ++ KK KKK++KKKKKKK K
Sbjct: 81 VRNKKTLRDQHGQYPAWMNQRQAKKLKKKREKKKKKKKGAKN 122
Score = 35.2 bits (81), Expect = 0.014
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 362 KKKKKKKKKKKKKKKKKKKKS 382
+++ KK KKK++KKKKKKK
Sbjct: 99 NQRQAKKLKKKREKKKKKKKG 119
Score = 35.2 bits (81), Expect = 0.015
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 361 KKKKKKKKKKKKKKKKKKKKKS 382
+++ KK KKK++KKKKKKK +
Sbjct: 99 NQRQAKKLKKKREKKKKKKKGA 120
Score = 34.8 bits (80), Expect = 0.017
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
KK KKK++KKKKKKK K
Sbjct: 102 QAKKLKKKREKKKKKKKGAKNLA 124
>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 2. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 83
Score = 40.0 bits (94), Expect = 1e-04
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
KKKKKKKKKK + K KK+
Sbjct: 23 VKKKKKKKKKKAEDTAATAKAKKA 46
Score = 37.3 bits (87), Expect = 0.001
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
KKKKKKKKKK + K
Sbjct: 22 LVKKKKKKKKKKAEDTAATAKAK 44
Score = 36.6 bits (85), Expect = 0.002
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKKS 382
L KKKKKKKKK + K KK +
Sbjct: 22 LVKKKKKKKKKKAEDTAATAKAKKAT 47
Score = 36.6 bits (85), Expect = 0.002
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
A KKKKKKKKKK + K+
Sbjct: 20 ADLVKKKKKKKKKKAEDTAATAKA 43
Score = 34.3 bits (79), Expect = 0.014
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
KKKKKKKK + K KK +
Sbjct: 26 KKKKKKKKAEDTAATAKAKKATA 48
Score = 31.6 bits (72), Expect = 0.100
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKKKKS 382
L K + KKKKKKKKKK + +
Sbjct: 13 LLGPKTEADLVKKKKKKKKKKAEDTAA 39
>gnl|CDD|220121 pfam09135, Alb1, Alb1. Alb1 is a nuclear shuttling factor involved
in ribosome biogenesis.
Length = 112
Score = 40.6 bits (95), Expect = 2e-04
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 314 SRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRN-VRTHSVTLNAKKKKKKKKKKKKK 372
SR + SP I +T + T R + S KKK++KKK K+
Sbjct: 3 SRAARRAPSPSIDLDKS---SLTSLPRAKRTDRKRPGILAASKNEGVSKKKQRKKKPKRL 59
Query: 373 KKKKKKKKKS 382
+K++K++K
Sbjct: 60 TRKQRKRQKK 69
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 42.3 bits (100), Expect = 2e-04
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 349 NVRTHSVTLNA----KKKKKKKKKKKKKKKKKKKKK 380
+++ S TLN K K +K K KKKK K K K
Sbjct: 179 DIKKVSSTLNVLINEKLKAEKAAKGGKKKKGKAKAK 214
Score = 39.3 bits (92), Expect = 0.002
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
AK K KK K K ++K+K K++K
Sbjct: 54 AKAKAKKALKAKIEEKEKAKREK 76
Score = 38.5 bits (90), Expect = 0.003
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
AK KK K K ++K+K K++K++
Sbjct: 56 AKAKKALKAKIEEKEKAKREKEEK 79
Score = 38.1 bits (89), Expect = 0.004
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
K KK K K ++K+K K++K+
Sbjct: 55 KAKAKKALKAKIEEKEKAKREKEE 78
Score = 37.3 bits (87), Expect = 0.007
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKK 380
AKK K K ++K+K K++K++K
Sbjct: 57 KAKKALKAKIEEKEKAKREKEEK 79
Score = 37.3 bits (87), Expect = 0.008
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
A K K KK K K ++K+K K++
Sbjct: 52 VAAKAKAKKALKAKIEEKEKAKRE 75
Score = 34.6 bits (80), Expect = 0.053
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
AK K K KK K K ++K+K
Sbjct: 50 AKVAAKAKAKKALKAKIEEKEKA 72
Score = 34.2 bits (79), Expect = 0.069
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K K KK K K ++K+K K
Sbjct: 51 KVAAKAKAKKALKAKIEEKEKAK 73
Score = 34.2 bits (79), Expect = 0.072
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
+K K K K KK K K ++K
Sbjct: 47 EEKAKVAAKAKAKKALKAKIEEKE 70
Score = 34.2 bits (79), Expect = 0.076
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
+K+++K K K K KK K K
Sbjct: 43 EEKEEEKAKVAAKAKAKKALKAK 65
Score = 33.1 bits (76), Expect = 0.18
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K K ++K+K K++K++K +
Sbjct: 60 KALKAKIEEKEKAKREKEEKGLR 82
Score = 32.3 bits (74), Expect = 0.27
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K K ++K+K K++K++K ++
Sbjct: 62 LKAKIEEKEKAKREKEEKGLREL 84
Score = 32.3 bits (74), Expect = 0.31
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
+++K K K K KK K K +
Sbjct: 45 KEEEKAKVAAKAKAKKALKAKIE 67
Score = 31.9 bits (73), Expect = 0.37
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
A K K ++K+K K++K++K ++
Sbjct: 61 ALKAKIEEKEKAKREKEEKGLRE 83
Score = 31.9 bits (73), Expect = 0.39
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
++K K K K KK K K ++
Sbjct: 46 EEEKAKVAAKAKAKKALKAKIEE 68
Score = 31.6 bits (72), Expect = 0.55
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKK 379
L AK ++K+K K++K++K ++
Sbjct: 61 ALKAKIEEKEKAKREKEEKGLREL 84
Score = 31.2 bits (71), Expect = 0.68
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
++K+++K K K K KK K
Sbjct: 42 DEEKEEEKAKVAAKAKAKKALK 63
Score = 30.0 bits (68), Expect = 1.8
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
+ ++K+++K K K K KK
Sbjct: 40 EEDEEKEEEKAKVAAKAKAKKAL 62
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 41.4 bits (97), Expect = 2e-04
Identities = 17/26 (65%), Positives = 20/26 (76%), Gaps = 3/26 (11%)
Query: 360 KKKKKKKK---KKKKKKKKKKKKKKS 382
KK KKKK K++KKKKK+KKKKK
Sbjct: 142 KKHKKKKHEDDKERKKKKKEKKKKKK 167
Score = 40.2 bits (94), Expect = 5e-04
Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 12/47 (25%)
Query: 341 PQSTPVTRNVRTHSVTLNAKKKKKKKKKK------KKKKKKKKKKKK 381
P+ TP + S L +KK KKKK KKKKK+KKKKKK
Sbjct: 127 PEETP------SDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKK 167
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 41.7 bits (98), Expect = 2e-04
Identities = 23/109 (21%), Positives = 34/109 (31%), Gaps = 8/109 (7%)
Query: 281 LISSSISFWIPGFVMVTMYYRIYK---EAVRQRIALSRTSSNIVSP-----VIQSTSEGS 332
L S+S+S + G ++ + + + + L+ Q E
Sbjct: 4 LWSTSLSLLLSGALVAALLFVFLHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPP 63
Query: 333 AVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
T TP +KK KK K K K K K K K K
Sbjct: 64 EEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVK 112
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 42.1 bits (99), Expect = 4e-04
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 354 SVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
S + + K KK KKKKKKKKK++K
Sbjct: 264 SDYYDVSEMVKFKKPKKKKKKKKKRRKD 291
Score = 41.7 bits (98), Expect = 5e-04
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 360 KKKKKKKKKKKKKKKKKKKK 379
K KK KKKKKKKKK++K
Sbjct: 273 VKFKKPKKKKKKKKKRRKDL 292
Score = 41.7 bits (98), Expect = 5e-04
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 361 KKKKKKKKKKKKKKKKKKKK 380
K KK KKKKKKKKK++K
Sbjct: 273 VKFKKPKKKKKKKKKRRKDL 292
Score = 41.7 bits (98), Expect = 5e-04
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 362 KKKKKKKKKKKKKKKKKKKK 381
K KK KKKKKKKKK++K
Sbjct: 273 VKFKKPKKKKKKKKKRRKDL 292
Score = 41.3 bits (97), Expect = 7e-04
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 352 THSVTLNAKKKKKKKKKKKKKKKKKKK 378
+ V+ K KK KKKKKKKKK++K
Sbjct: 266 YYDVSEMVKFKKPKKKKKKKKKRRKDL 292
Score = 37.4 bits (87), Expect = 0.013
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 363 KKKKKKKKKKKKKKKKKKKS 382
+ K KK KKKKKKKKK+
Sbjct: 270 SEMVKFKKPKKKKKKKKKRR 289
Score = 32.0 bits (73), Expect = 0.60
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
+KK++KKK+ ++KK +K+K
Sbjct: 97 KSKKRQKKKEAERKKALLLDEKEK 120
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 41.9 bits (99), Expect = 4e-04
Identities = 14/23 (60%), Positives = 20/23 (86%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
KK+++KK +K+KKKKK+KKK K
Sbjct: 385 KKREEKKPQKRKKKKKRKKKGKK 407
Score = 41.5 bits (98), Expect = 5e-04
Identities = 15/22 (68%), Positives = 20/22 (90%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
+K+KKKKK+KKK KK+KKK +K
Sbjct: 393 QKRKKKKKRKKKGKKRKKKGRK 414
Score = 41.5 bits (98), Expect = 5e-04
Identities = 14/22 (63%), Positives = 20/22 (90%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
KKK+++KK +K+KKKKK+KKK
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKG 405
Score = 41.1 bits (97), Expect = 7e-04
Identities = 16/22 (72%), Positives = 20/22 (90%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
KK +K+KKKKK+KKK KK+KKK
Sbjct: 390 KKPQKRKKKKKRKKKGKKRKKK 411
Score = 41.1 bits (97), Expect = 7e-04
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K +K+KKKKK+KKK KK+KKK
Sbjct: 390 KKPQKRKKKKKRKKKGKKRKKKG 412
Score = 41.1 bits (97), Expect = 8e-04
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
KKK+++KK +K+KKKKK+KKK
Sbjct: 381 KPPKKKREEKKPQKRKKKKKRKKK 404
Score = 40.7 bits (96), Expect = 8e-04
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
+K+KKKKK+KKK KK+KKK +
Sbjct: 392 PQKRKKKKKRKKKGKKRKKKGRK 414
Score = 40.3 bits (95), Expect = 0.001
Identities = 14/23 (60%), Positives = 20/23 (86%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K+++KK +K+KKKKK+KKK KK
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKR 408
Score = 40.0 bits (94), Expect = 0.001
Identities = 15/22 (68%), Positives = 20/22 (90%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
+KK +K+KKKKK+KKK KK+KK
Sbjct: 389 EKKPQKRKKKKKRKKKGKKRKK 410
Score = 39.6 bits (93), Expect = 0.002
Identities = 14/22 (63%), Positives = 20/22 (90%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
++KK +K+KKKKK+KKK KK+K
Sbjct: 388 EEKKPQKRKKKKKRKKKGKKRK 409
Score = 39.2 bits (92), Expect = 0.003
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKKKK 381
K KKK+++KK +K+KKKKK+K
Sbjct: 377 EKYPKPPKKKREEKKPQKRKKKKKRK 402
Score = 33.4 bits (77), Expect = 0.17
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 359 AKKKKKKKKKKKKKKKKK 376
KKK+KKK KK+KKK +K
Sbjct: 397 KKKKRKKKGKKRKKKGRK 414
Score = 32.6 bits (75), Expect = 0.32
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K+K K KKK+++KK +K+KK
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKK 397
Score = 30.7 bits (70), Expect = 1.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 361 KKKKKKKKKKKKKKKKKKKKKS 382
K+K K KKK+++KK +K+K
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKK 397
>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain. This
presumed domain is found at the N-terminus of Ribosomal
L30 proteins and has been termed RL30NT or NUC018.
Length = 71
Score = 38.0 bits (89), Expect = 5e-04
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
N K + K+ KK+ KK +KKK+K
Sbjct: 9 NEKLRAKRAKKRAAKKAARKKKRK 32
Score = 35.7 bits (83), Expect = 0.003
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
L AK+ KK+ KK +KKK+K K
Sbjct: 12 LRAKRAKKRAAKKAARKKKRKLIFK 36
Score = 34.5 bits (80), Expect = 0.007
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
+ K+ KK+ KK +KKK+K
Sbjct: 11 KLRAKRAKKRAAKKAARKKKRKL 33
Score = 33.7 bits (78), Expect = 0.013
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
+ KK+ KK +KKK+K K+
Sbjct: 15 KRAKKRAAKKAARKKKRKLIFKR 37
Score = 33.4 bits (77), Expect = 0.023
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 361 KKKKKKKKKKKKKKKKKKKKKS 382
K + K+ KK+ KK +KKK+
Sbjct: 11 KLRAKRAKKRAAKKAARKKKRK 32
Score = 32.6 bits (75), Expect = 0.037
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
KK+K+ +K + K+ KK+ KK
Sbjct: 4 KKRKRNEKLRAKRAKKRAAKKA 25
Score = 32.6 bits (75), Expect = 0.039
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKK 380
KK+ KK +KKK+K K+
Sbjct: 15 KRAKKRAAKKAARKKKRKLIFKR 37
Score = 31.0 bits (71), Expect = 0.13
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K+ +K + K+ KK+ KK +K
Sbjct: 6 RKRNEKLRAKRAKKRAAKKAARK 28
Score = 31.0 bits (71), Expect = 0.14
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
+ KK+K+ +K + K+ KK+ KK
Sbjct: 1 SLLKKRKRNEKLRAKRAKKRAAKK 24
Score = 30.7 bits (70), Expect = 0.20
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K+K+ +K + K+ KK+ KK
Sbjct: 5 KRKRNEKLRAKRAKKRAAKKAA 26
Score = 30.7 bits (70), Expect = 0.21
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K+ KK +KKK+K K+ +K
Sbjct: 18 KKRAAKKAARKKKRKLIFKRAEK 40
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 39.1 bits (91), Expect = 6e-04
Identities = 21/53 (39%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 329 SEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
G +T S S P H K KKKKKK KK KK KK KK
Sbjct: 73 QNGECHLTTSSGEPSHPDD-----HPPEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 34.5 bits (79), Expect = 0.024
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 352 THSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
+H + +K KKKKKK KK KK KK S
Sbjct: 87 SHPDDHPPEPTEKPKKKKKKSKKTKKPKKSS 117
Score = 33.7 bits (77), Expect = 0.037
Identities = 13/20 (65%), Positives = 13/20 (65%)
Query: 363 KKKKKKKKKKKKKKKKKKKS 382
K KKKKKK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSK 118
>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in
Williams-Beuren syndrome. This domain family is found
in eukaryotes, and is typically between 72 and 83 amino
acids in length. The family is found in association with
pfam08241. This family is made up of
S-adenosylmethionine-dependent methyltransferases. The
proteins are deleted in Williams-Beuren syndrome (WBS),
a complex developmental disorder with multisystemic
manifestations including supravalvular aortic stenosis
(SVAS) and a specific cognitive phenotype.
Length = 85
Score = 37.3 bits (87), Expect = 0.001
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 349 NVRTHSVTLNAKKKKKKKKKKKKKKKKKK----KKK 380
+ V +++ ++KKKKKKK KKK K +KK
Sbjct: 26 QIDASKVRRISQRNRRKKKKKKKLKKKSKEWILRKK 61
Score = 37.3 bits (87), Expect = 0.001
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 349 NVRTHSVTLNAKKKKKKKKKKKKKKKKKKK----KKK 381
S ++ ++KKKKKKK KKK K +KK
Sbjct: 25 EQIDASKVRRISQRNRRKKKKKKKLKKKSKEWILRKK 61
Score = 33.8 bits (78), Expect = 0.021
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K ++ ++ ++KKKKKKK KKKS
Sbjct: 31 KVRRISQRNRRKKKKKKKLKKKS 53
Score = 31.9 bits (73), Expect = 0.086
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKKKKS 382
++A K ++ ++ ++KKKKKKK KK
Sbjct: 26 QIDASKVRRISQRNRRKKKKKKKLKKK 52
Score = 30.7 bits (70), Expect = 0.25
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 335 VTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKK----KKKKKKKKK 380
+ + ++ R KKKKKK KKK K +KK++ +++
Sbjct: 18 EEGEEDDEQIDASKVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQMRRR 67
Score = 28.8 bits (65), Expect = 1.1
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 330 EGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKK----KKKKKKKKKKKK 380
G + ++ V R + + KKK KKK K +KK++ +++ K+
Sbjct: 16 LGEEGEEDDEQIDASKVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQMRRRGKE 70
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 40.4 bits (94), Expect = 0.001
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 330 EGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
E S TVS T + + K KKKK++K+K++KKKKKK
Sbjct: 247 EASLANTVSGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHH 299
Score = 35.4 bits (81), Expect = 0.054
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Query: 338 SDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
++T +S P +V +V +KK KKK+KK+K+K++ K KKK+
Sbjct: 181 AETSKS-PEKGDVP--AVEKKSKKPKKKEKKEKEKERDKDKKKE 221
Score = 34.3 bits (78), Expect = 0.11
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K KKK+KK+K+K++ K KKK+
Sbjct: 201 KPKKKEKKEKEKERDKDKKKEV 222
Score = 32.7 bits (74), Expect = 0.38
Identities = 8/22 (36%), Positives = 18/22 (81%)
Query: 361 KKKKKKKKKKKKKKKKKKKKKS 382
+K K++KKK++K+K+ +++ S
Sbjct: 95 EKDKREKKKREKEKRGRRRHHS 116
Score = 32.3 bits (73), Expect = 0.40
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
+K K++KKK++K+K+ +++
Sbjct: 94 LEKDKREKKKREKEKRGRRRHHSL 117
Score = 32.3 bits (73), Expect = 0.43
Identities = 9/27 (33%), Positives = 21/27 (77%)
Query: 355 VTLNAKKKKKKKKKKKKKKKKKKKKKK 381
V L +++ +++ +K K++KKK++K+K
Sbjct: 82 VKLEEERRHRQRLEKDKREKKKREKEK 108
Score = 32.3 bits (73), Expect = 0.44
Identities = 7/23 (30%), Positives = 18/23 (78%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
+ +K K++KKK++K+K+ +++
Sbjct: 93 RLEKDKREKKKREKEKRGRRRHH 115
Score = 32.3 bits (73), Expect = 0.48
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 351 RTHSVTLNAKKKKKKKKKKKKKKKKKKK 378
R H L K++KKK++K+K+ +++
Sbjct: 88 RRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 32.0 bits (72), Expect = 0.53
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
KKK+KK+K+K++ K KKK+ +
Sbjct: 203 KKKEKKEKEKERDKDKKKEVEG 224
Score = 32.0 bits (72), Expect = 0.59
Identities = 7/23 (30%), Positives = 19/23 (82%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
++ +++ +K K++KKK++K+K+
Sbjct: 88 RRHRQRLEKDKREKKKREKEKRG 110
Score = 30.4 bits (68), Expect = 1.6
Identities = 7/22 (31%), Positives = 19/22 (86%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
+++ +K K++KKK++K+K+ ++
Sbjct: 91 RQRLEKDKREKKKREKEKRGRR 112
Score = 30.4 bits (68), Expect = 1.6
Identities = 7/22 (31%), Positives = 19/22 (86%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
++ +K K++KKK++K+K+ +++
Sbjct: 92 QRLEKDKREKKKREKEKRGRRR 113
Score = 30.4 bits (68), Expect = 2.0
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K+KK+K+K++ K KKK+ + KS
Sbjct: 205 KEKKEKEKERDKDKKKEVEGFKS 227
>gnl|CDD|218078 pfam04419, 4F5, 4F5 protein family. Members of this family are
short proteins that are rich in aspartate, glutamate,
lysine and arginine. Although the function of these
proteins is unknown, they are found to be ubiquitously
expressed.
Length = 38
Score = 35.3 bits (82), Expect = 0.002
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
NAKK KKKKK K + K K
Sbjct: 14 NAKKAAKKKKKGAKSQLKAAAKALE 38
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 38.9 bits (91), Expect = 0.002
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
KKKK+ K K K+ KKKKKK
Sbjct: 84 LKKKKRVKTKAYKEPTKKKKKKDP 107
Score = 38.1 bits (89), Expect = 0.004
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
KKKK+ K K K+ KKKKKK
Sbjct: 83 RLKKKKRVKTKAYKEPTKKKKKK 105
Score = 37.7 bits (88), Expect = 0.006
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
KKK+ K K K+ KKKKKK +
Sbjct: 84 LKKKKRVKTKAYKEPTKKKKKKDPT 108
Score = 35.0 bits (81), Expect = 0.039
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
KK+ K K K+ KKKKKK +
Sbjct: 87 KKRVKTKAYKEPTKKKKKKDPTA 109
Score = 34.7 bits (80), Expect = 0.055
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 332 SAVVTVSDTPQSTPVTRNVRTHSVTLN----------AKKKKKKKKKKKKKKKKKKKKK 380
S ++ + T +P ++ R+ S N + ++KK + K +K+K+KKK+K
Sbjct: 124 SERISWAPTLLDSPRRKSSRS-STVQNKEATHERLKEREIRRKKIQAKARKRKEKKKEK 181
Score = 33.9 bits (78), Expect = 0.083
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKKS 382
KKKK K K + KKKS
Sbjct: 99 TKKKKKKDPTAAKSPKAAAPRPKKKS 124
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor
Srx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srx is part of the Srg
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 275
Score = 38.7 bits (91), Expect = 0.003
Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 1/130 (0%)
Query: 50 FIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYF 109
I + I+ N L+ +K L+ + A ++ ++ + + ++L D +
Sbjct: 2 LISLFGIILNWLIFYIFLKLPSLKNSFGILCANKAISNAIICTIFLFYVVPMTLLDLSFL 61
Query: 110 GYFMCDVWNSFDVYFS-TASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWIL 168
+ + S L IS++R+ A+ P +Y I + ++++ +WI+
Sbjct: 62 PELLNSHIGGLILLGLYEISPLTHLLISLNRFCAVFFPFKYKKIFSIKNTKIIITFIWII 121
Query: 169 PGIISFTPIM 178
IIS
Sbjct: 122 AIIISTLFYF 131
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 38.7 bits (90), Expect = 0.004
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 310 RIALSRTSSN-IVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKK 368
+ A S+ SS+ V V + S+G A T + + + K++KKKKK
Sbjct: 65 KCAESKLSSDEAVKRVEKGGSKGPAAKTKP--AKEPK-NESGKEEEKEKEQVKEEKKKKK 121
Query: 369 KKKKKKKKKKKKK 381
+K K++ K +K K
Sbjct: 122 EKPKEEPKDRKPK 134
Score = 36.8 bits (85), Expect = 0.019
Identities = 11/25 (44%), Positives = 21/25 (84%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
+ K+++K+K++ K++KKKKK+K K
Sbjct: 102 SGKEEEKEKEQVKEEKKKKKEKPKE 126
Score = 34.5 bits (79), Expect = 0.10
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 341 PQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
P+ P + AK+K+ K+K+K+K+KK ++ +
Sbjct: 124 PKEEP-----KDRKPKEEAKEKRPPKEKEKEKEKKVEEPRD 159
Score = 32.6 bits (74), Expect = 0.39
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 346 VTRNVRTHSVTLNAK------KKKKKKKKKKKKKKKKKKKKKS 382
V R + S AK K + K+++K+K++ K++KK
Sbjct: 77 VKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKK 119
Score = 31.4 bits (71), Expect = 0.77
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 345 PVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
V + + K + KK KKK KKK+
Sbjct: 153 KVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKE 189
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 118
Score = 36.5 bits (85), Expect = 0.004
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 350 VRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
R A+++ + K K+K+KKKKKKK+
Sbjct: 57 TRGGRKGKTAREEAVEAKAKEKEKKKKKKKEL 88
Score = 34.2 bits (79), Expect = 0.028
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 346 VTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKK 379
VTR R + K K+K+KKKKKKK+ +
Sbjct: 56 VTRGGRKGKTAREEAVEAKAKEKEKKKKKKKELE 89
Score = 31.8 bits (73), Expect = 0.17
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 11/57 (19%)
Query: 335 VTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKK-------KKKKKKK----KKK 380
VTV+ + R + +KKKKKKK+ + ++KKK++ +KK
Sbjct: 54 VTVTRGGRKGKTAREEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEELAELRKK 110
>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7). RRP7
is an essential protein in yeast that is involved in
pre-rRNA processing and ribosome assembly. It is
speculated to be required for correct assembly of rpS27
into the pre-ribosomal particle.
Length = 131
Score = 36.4 bits (85), Expect = 0.005
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 346 VTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
VTR R + K ++++K K+KKKKKKK+ +
Sbjct: 55 VTRGGRKRKAGASRNKAAEERRKLKEKKKKKKKELE 90
Score = 31.8 bits (73), Expect = 0.19
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 335 VTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKK------KKKKKKKK 380
TV+ + + + K+KKKKKKK+ + ++KKK++
Sbjct: 53 TTVTRGGRKRKAGASRNKAAEERRKLKEKKKKKKKELENFYRFQIREKKKEE 104
Score = 31.0 bits (71), Expect = 0.35
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 330 EGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKK------KKKKKKKK----K 379
+G VT + +RN +KKKKKKK+ + ++KKK++ +
Sbjct: 50 DGWTTVTRGGRKRKAGASRNKAAEERRKLKEKKKKKKKELENFYRFQIREKKKEELAELR 109
Query: 380 KK 381
KK
Sbjct: 110 KK 111
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 37.4 bits (87), Expect = 0.005
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
K+K K KKKK KKKK K K KK
Sbjct: 80 EKQKWKWKKKKSKKKKDKDKDKKD 103
Score = 35.8 bits (83), Expect = 0.018
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
+K K KKKK KKKK K K KK
Sbjct: 80 EKQKWKWKKKKSKKKKDKDKDKKDD 104
Score = 35.4 bits (82), Expect = 0.020
Identities = 15/23 (65%), Positives = 15/23 (65%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K KKKK KKKK K K KK KK
Sbjct: 84 WKWKKKKSKKKKDKDKDKKDDKK 106
Score = 34.7 bits (80), Expect = 0.036
Identities = 14/23 (60%), Positives = 14/23 (60%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K KKKK KKKK K K KK K
Sbjct: 84 WKWKKKKSKKKKDKDKDKKDDKK 106
Score = 34.7 bits (80), Expect = 0.038
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
KKKK K K KK KK K +K
Sbjct: 90 KSKKKKDKDKDKKDDKKDDKSEKK 113
Score = 34.7 bits (80), Expect = 0.041
Identities = 14/23 (60%), Positives = 14/23 (60%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K K KKKK KKKK K K KK
Sbjct: 83 KWKWKKKKSKKKKDKDKDKKDDK 105
Score = 34.7 bits (80), Expect = 0.043
Identities = 14/23 (60%), Positives = 14/23 (60%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
KKKK KKKK K K KK KK
Sbjct: 85 KWKKKKSKKKKDKDKDKKDDKKD 107
Score = 34.3 bits (79), Expect = 0.045
Identities = 15/23 (65%), Positives = 15/23 (65%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
KKK KKKK K K KK KK KS
Sbjct: 88 KKKSKKKKDKDKDKKDDKKDDKS 110
Score = 34.3 bits (79), Expect = 0.051
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
+K+K K KKKK KKKK K K K
Sbjct: 79 EEKQKWKWKKKKSKKKKDKDKDKK 102
Score = 33.9 bits (78), Expect = 0.063
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKKS 382
+KKKK K K KK KK K +KK
Sbjct: 89 KKSKKKKDKDKDKKDDKKDDKSEKKD 114
Score = 33.9 bits (78), Expect = 0.073
Identities = 14/23 (60%), Positives = 14/23 (60%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
KKKK KKKK K K KK KK
Sbjct: 87 KKKKSKKKKDKDKDKKDDKKDDK 109
Score = 33.1 bits (76), Expect = 0.13
Identities = 13/24 (54%), Positives = 13/24 (54%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
KK KKKK K K KK KK K
Sbjct: 87 KKKKSKKKKDKDKDKKDDKKDDKS 110
Score = 32.7 bits (75), Expect = 0.16
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K K K KK KK K +KK +K
Sbjct: 95 KDKDKDKKDDKKDDKSEKKDEKE 117
Score = 32.4 bits (74), Expect = 0.26
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
K K KK KK K +KK +K+
Sbjct: 94 KKDKDKDKKDDKKDDKSEKKDEKE 117
Score = 31.6 bits (72), Expect = 0.42
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
K KK KK K +KK +K+ +
Sbjct: 97 KDKDKKDDKKDDKSEKKDEKEAEDK 121
Score = 30.8 bits (70), Expect = 0.71
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
+ K KK KK K +KK +K+ +
Sbjct: 96 DKDKDKKDDKKDDKSEKKDEKEAE 119
Score = 30.4 bits (69), Expect = 1.0
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 15/39 (38%)
Query: 359 AKKKKK---------------KKKKKKKKKKKKKKKKKS 382
AKKKKK K+K K KKKK KKKK K
Sbjct: 60 AKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKD 98
Score = 30.0 bits (68), Expect = 1.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
+ KK KK K +KK +K+ + K
Sbjct: 98 DKDKKDDKKDDKSEKKDEKEAEDKL 122
Score = 30.0 bits (68), Expect = 1.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
KK KK K +KK +K+ + K
Sbjct: 101 KKDDKKDDKSEKKDEKEAEDKLE 123
Score = 29.3 bits (66), Expect = 2.5
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K KK K +KK +K+ + K +
Sbjct: 102 KDDKKDDKSEKKDEKEAEDKLED 124
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 37.2 bits (87), Expect = 0.005
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
KKK KK KK+K+K++K+ +K
Sbjct: 12 VDKKKAKKAKKEKRKQRKQARKG 34
Score = 36.8 bits (86), Expect = 0.007
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
KKK KK KK+K+K++K+ +K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGA 35
Score = 36.4 bits (85), Expect = 0.011
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKK 380
+ KK KK KK+K+K++K+ +K
Sbjct: 13 DKKKAKKAKKEKRKQRKQARKGA 35
Score = 30.6 bits (70), Expect = 0.74
Identities = 10/18 (55%), Positives = 16/18 (88%)
Query: 365 KKKKKKKKKKKKKKKKKS 382
KKK KK KK+K+K++K++
Sbjct: 14 KKKAKKAKKEKRKQRKQA 31
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 38.1 bits (89), Expect = 0.006
Identities = 14/67 (20%), Positives = 19/67 (28%)
Query: 316 TSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKK 375
S +P V DT +T + A K KKK K +
Sbjct: 42 LESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELD 101
Query: 376 KKKKKKS 382
KK +
Sbjct: 102 SSKKAEK 108
Score = 33.4 bits (77), Expect = 0.18
Identities = 15/78 (19%), Positives = 26/78 (33%)
Query: 304 KEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKK 363
K+ +++ A S++ I I+ E ++ V+ + K
Sbjct: 17 KKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPK 76
Query: 364 KKKKKKKKKKKKKKKKKK 381
KK K K K KK
Sbjct: 77 KKTKTAAKAAAAKAPAKK 94
Score = 29.6 bits (67), Expect = 2.8
Identities = 8/47 (17%), Positives = 17/47 (36%)
Query: 336 TVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
+ + ++ + A K K K K++ K+ + KK
Sbjct: 1 MTTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKK 47
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 37.9 bits (88), Expect = 0.008
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 21/67 (31%)
Query: 316 TSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKK 375
+S V V++S EG + L + K KK K KKK KK
Sbjct: 120 LNSKPVKNVLESIMEGLDKI---------------------LGIETKAKKGKAKKKTKKS 158
Query: 376 KKKKKKS 382
KKK+ K
Sbjct: 159 KKKEAKE 165
Score = 36.4 bits (84), Expect = 0.020
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKKS 382
+ K KK K KKK KK KKK+ K+ S
Sbjct: 142 IETKAKKGKAKKKTKKSKKKEAKESS 167
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 36.0 bits (84), Expect = 0.010
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K +K +KK +K K K +KKK
Sbjct: 67 ELKAWEKAEKKAEKAKAKAEKKK 89
Score = 36.0 bits (84), Expect = 0.011
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKKK 380
L A +K +KK +K K K +KKK K
Sbjct: 67 ELKAWEKAEKKAEKAKAKAEKKKAK 91
Score = 36.0 bits (84), Expect = 0.011
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
A+KK +K K K +KKK KK++ K
Sbjct: 74 AEKKAEKAKAKAEKKKAKKEEPKP 97
Score = 35.6 bits (83), Expect = 0.015
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K +K +KK +K K K +KKK
Sbjct: 69 KAWEKAEKKAEKAKAKAEKKKA 90
Score = 35.2 bits (82), Expect = 0.017
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
K +KK +K K K +KKK KK++
Sbjct: 72 EKAEKKAEKAKAKAEKKKAKKEEP 95
Score = 35.2 bits (82), Expect = 0.018
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 354 SVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
+ L+ K+ K +K +KK +K K K +K
Sbjct: 60 AALLDKKELKAWEKAEKKAEKAKAKAEK 87
Score = 34.8 bits (81), Expect = 0.025
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
+K +KK +K K K +KKK K
Sbjct: 70 AWEKAEKKAEKAKAKAEKKKAK 91
Score = 32.9 bits (76), Expect = 0.13
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
K +K K K +KKK KK++ K +
Sbjct: 75 EKKAEKAKAKAEKKKAKKEEPKPR 98
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 35.7 bits (83), Expect = 0.010
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKKKK 381
T +K+K+ +K ++KK K+++K+K
Sbjct: 103 TKERAEKEKRTRKNREKKFKRRQKEK 128
Score = 35.3 bits (82), Expect = 0.012
Identities = 9/22 (40%), Positives = 19/22 (86%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K+K+ +K ++KK K+++K+K+K
Sbjct: 109 KEKRTRKNREKKFKRRQKEKEK 130
Score = 34.9 bits (81), Expect = 0.018
Identities = 8/22 (36%), Positives = 18/22 (81%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKK 380
+K+ +K ++KK K+++K+K+K
Sbjct: 109 KEKRTRKNREKKFKRRQKEKEK 130
Score = 34.6 bits (80), Expect = 0.025
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
+ K++ +K+K+ +K ++KK K+
Sbjct: 101 ERTKERAEKEKRTRKNREKKFKR 123
Score = 34.2 bits (79), Expect = 0.032
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K++ +K+K+ +K ++KK K++
Sbjct: 102 RTKERAEKEKRTRKNREKKFKRR 124
Score = 33.8 bits (78), Expect = 0.041
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
++ K++ +K+K+ +K ++KK K
Sbjct: 100 RERTKERAEKEKRTRKNREKKFK 122
Score = 33.8 bits (78), Expect = 0.043
Identities = 7/25 (28%), Positives = 19/25 (76%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
L ++++ K++ +K+K+ +K ++KK
Sbjct: 96 LRLRRERTKERAEKEKRTRKNREKK 120
Score = 31.9 bits (73), Expect = 0.19
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 346 VTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
N + L K+KKKK+K+ KK++ + ++
Sbjct: 65 KKHNAKVEKELLREKEKKKKRKRPGKKRRIALRLRR 100
Score = 30.7 bits (70), Expect = 0.51
Identities = 5/23 (21%), Positives = 17/23 (73%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
A + ++++ K++ +K+K+ +K +
Sbjct: 95 ALRLRRERTKERAEKEKRTRKNR 117
Score = 29.2 bits (66), Expect = 1.7
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 354 SVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
+ +KKKK+K+ KK++ + +++
Sbjct: 74 ELLREKEKKKKRKRPGKKRRIALRLRRE 101
Score = 28.8 bits (65), Expect = 2.3
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
KK+K+ KK++ + ++++ K
Sbjct: 81 KKKKRKRPGKKRRIALRLRRERTK 104
Score = 28.4 bits (64), Expect = 2.9
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
KKKK+K+ KK++ + ++++
Sbjct: 79 KEKKKKRKRPGKKRRIALRLRRER 102
Score = 28.4 bits (64), Expect = 3.3
Identities = 7/25 (28%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 359 AKKKKKK--KKKKKKKKKKKKKKKK 381
KKK+K+ KK++ + ++++ K+
Sbjct: 81 KKKKRKRPGKKRRIALRLRRERTKE 105
Score = 28.0 bits (63), Expect = 4.9
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKKKKS 382
L +K+KKKK+K+ KK++ + +
Sbjct: 74 ELLREKEKKKKRKRPGKKRRIALRLRR 100
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 36.8 bits (86), Expect = 0.011
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
Query: 52 IITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGY 111
+ I GN+++II K +KLR +Y + ADLL + F ++ T
Sbjct: 1 SVIGIFGNVIMIILTFKKKKLRSKCSYLICVQCLADLLCLSGEIIFVVLL-FTGTQLTRN 59
Query: 112 FMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLML 162
C + ++ TA + I +DR A+ P+ Y ++ + + + L
Sbjct: 60 E-CFLIIIPYIFGQTAQSPLMLMIGIDRLIAVKFPIFYRLLSSSKYLFIQL 109
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 35.7 bits (83), Expect = 0.013
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKK 379
L K+ K K++K+++ ++K+K+
Sbjct: 123 LLEKELAKLKREKRRENERKQKE 145
Score = 33.8 bits (78), Expect = 0.059
Identities = 6/20 (30%), Positives = 16/20 (80%)
Query: 361 KKKKKKKKKKKKKKKKKKKK 380
K+ K K++K+++ ++K+K+
Sbjct: 126 KELAKLKREKRRENERKQKE 145
Score = 33.8 bits (78), Expect = 0.059
Identities = 6/20 (30%), Positives = 16/20 (80%)
Query: 362 KKKKKKKKKKKKKKKKKKKK 381
K+ K K++K+++ ++K+K+
Sbjct: 126 KELAKLKREKRRENERKQKE 145
Score = 32.6 bits (75), Expect = 0.15
Identities = 7/25 (28%), Positives = 17/25 (68%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
L + K K++K+++ ++K+K+ K
Sbjct: 124 LEKELAKLKREKRRENERKQKEILK 148
Score = 31.9 bits (73), Expect = 0.26
Identities = 7/24 (29%), Positives = 18/24 (75%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKK 380
AK K++K+++ ++K+K+ K++
Sbjct: 127 ELAKLKREKRRENERKQKEILKEQ 150
Score = 31.1 bits (71), Expect = 0.43
Identities = 6/23 (26%), Positives = 17/23 (73%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K K++K+++ ++K+K+ K++
Sbjct: 129 AKLKREKRRENERKQKEILKEQM 151
Score = 29.9 bits (68), Expect = 1.1
Identities = 5/22 (22%), Positives = 16/22 (72%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
+ +K+ K K++K+++ ++K+
Sbjct: 122 ELLEKELAKLKREKRRENERKQ 143
Score = 29.6 bits (67), Expect = 1.6
Identities = 6/25 (24%), Positives = 17/25 (68%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKKK 380
K++K+++ ++K+K+ K++ K
Sbjct: 128 LAKLKREKRRENERKQKEILKEQMK 152
Score = 28.8 bits (65), Expect = 3.1
Identities = 6/22 (27%), Positives = 17/22 (77%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K++K+++ ++K+K+ K++ K
Sbjct: 131 LKREKRRENERKQKEILKEQMK 152
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this family
(Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 34.5 bits (80), Expect = 0.016
Identities = 5/23 (21%), Positives = 17/23 (73%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
+K+++K +++++ K+ K K++
Sbjct: 2 ERKEEEKAQREEELKRLKNLKRE 24
Score = 33.8 bits (78), Expect = 0.026
Identities = 5/22 (22%), Positives = 17/22 (77%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K+++K +++++ K+ K K+++
Sbjct: 4 KEEEKAQREEELKRLKNLKREE 25
Score = 33.0 bits (76), Expect = 0.046
Identities = 6/22 (27%), Positives = 17/22 (77%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K++K+++K +++++ K+ K K
Sbjct: 1 KERKEEEKAQREEELKRLKNLK 22
Score = 31.5 bits (72), Expect = 0.20
Identities = 5/23 (21%), Positives = 16/23 (69%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K +++++ K+ K K+++ ++K
Sbjct: 7 EKAQREEELKRLKNLKREEIEEK 29
Score = 31.1 bits (71), Expect = 0.21
Identities = 4/21 (19%), Positives = 15/21 (71%)
Query: 359 AKKKKKKKKKKKKKKKKKKKK 379
++K +++++ K+ K K+++
Sbjct: 5 EEEKAQREEELKRLKNLKREE 25
>gnl|CDD|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase. Grn1 (yeast) and
GNL3L (human) are putative GTPases which are required
for growth and play a role in processing of nucleolar
pre-rRNA. This family contains a potential nuclear
localisation signal.
Length = 80
Score = 33.8 bits (78), Expect = 0.017
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKK 380
+K +K+ KK K KKKK
Sbjct: 12 EHHRKLRKEAKKNPTWKSKKKK 33
Score = 33.4 bits (77), Expect = 0.026
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
A+ +K +K+ KK K KKKK
Sbjct: 11 AEHHRKLRKEAKKNPTWKSKKKK 33
Score = 31.8 bits (73), Expect = 0.081
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
+ K +KK + +K +K+ KK+
Sbjct: 1 RLRYKIEKKVAEHHRKLRKEAKKN 24
Score = 30.3 bits (69), Expect = 0.35
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
+ K +KK + +K +K+ KK
Sbjct: 3 RYKIEKKVAEHHRKLRKEAKKNP 25
>gnl|CDD|219783 pfam08297, U3_snoRNA_assoc, U3 snoRNA associated. This family of
proteins is associated with U3 snoRNA. U3 snoRNA is
required for nucleolar processing of pre-18S ribosomal
RNA.
Length = 87
Score = 33.9 bits (78), Expect = 0.019
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 338 SDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
+ P T ++ L +KKK K + KK +K+ K KK
Sbjct: 9 EAIDEDRPPTPPPESYEEELKKQKKKNKLRFLKKLEKRPKDVKK 52
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 35.9 bits (83), Expect = 0.024
Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 6/79 (7%)
Query: 304 KEAVRQRIALSRTSSNI-VSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKK 362
K R++ S TS S S+ + + + + L++
Sbjct: 138 KRKQRKKAQESATSPESSPSSTPNSSRPSTPHLLKAK-----EGPSRRAKKAAKLSSTAS 192
Query: 363 KKKKKKKKKKKKKKKKKKK 381
+K K K KK KK
Sbjct: 193 SGDEKSPKSKAAPKKAGKK 211
Score = 31.6 bits (72), Expect = 0.54
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
+ +K K K KK KK +K
Sbjct: 191 ASSGDEKSPKSKAAPKKAGKKMRK 214
Score = 28.6 bits (64), Expect = 5.5
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 326 QSTSEGSAVVTVSDTPQSTP-VTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
Q + + +P STP +R H + ++ KK K +KS
Sbjct: 141 QRKKAQESATSPESSPSSTPNSSRPSTPHLLKAKEGPSRRAKKAAKLSSTASSGDEKS 198
>gnl|CDD|219621 pfam07890, Rrp15p, Rrp15p. Rrp15p is required for the formation of
60S ribosomal subunits.
Length = 132
Score = 34.6 bits (80), Expect = 0.026
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 338 SDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
S P S + L AKKK K +K +KK K++ + +K+
Sbjct: 12 SKLPASKRKDPILSRSKKLLKAKKKLKSEKLEKKAKRQLRAEKR 55
Score = 32.7 bits (75), Expect = 0.12
Identities = 8/47 (17%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 336 TVSDTPQSTPV-TRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
+ + + P+ +R+ + K +K +KK K++ + +K++ +
Sbjct: 13 KLPASKRKDPILSRSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALE 59
Score = 29.6 bits (67), Expect = 1.3
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 350 VRTHSVTLNAKKKKKKKKKKKKKKKKKKK--KKK 381
VR K+ KK + K+++ K+ K+K
Sbjct: 92 VRAAQKKTEKAVKEAGKKARVKREELLKEVSKEK 125
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 36.0 bits (83), Expect = 0.028
Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 11/155 (7%)
Query: 46 MLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTD 105
+ + I ++GN+LVI +I R + ++ Y + ++A +DL++ PF I + +
Sbjct: 33 VFYILLFIFGLIGNVLVIAVLIVKRFMFVVDVY-LFNIAMSDLMLVFS-FPF-IIHNDLN 89
Query: 106 EWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNV 165
EW FG FMC + +++ + IS+DRY +V + +VLL ++
Sbjct: 90 EWIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKNKSISLSVLLSVA-A 148
Query: 166 WILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIF 200
W+ I+S P M+ +Y D+ K CIF
Sbjct: 149 WVCSVILS-MPAMVLYYV--DNTDNLKQ----CIF 176
>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region. This
domain is the C-terminal end of ribosomal L18/L5
proteins.
Length = 93
Score = 33.7 bits (78), Expect = 0.028
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 359 AKKKKKKKKKKKKKKKKKKKK 379
++KKK+KK+ K + K+ KK
Sbjct: 60 SRKKKEKKEVKAESKRYNAKK 80
Score = 33.3 bits (77), Expect = 0.034
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKK 380
+ +KKK+KK+ K + K+ KK
Sbjct: 58 DPSRKKKEKKEVKAESKRYNAKK 80
Score = 32.9 bits (76), Expect = 0.040
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 362 KKKKKKKKKKKKKKKKKKKK 381
+KKK+KK+ K + K+ KK
Sbjct: 61 RKKKEKKEVKAESKRYNAKK 80
Score = 28.3 bits (64), Expect = 1.9
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 365 KKKKKKKKKKKKKKKKKS 382
+KKK+KK+ K + K+ +
Sbjct: 61 RKKKEKKEVKAESKRYNA 78
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 34.2 bits (79), Expect = 0.029
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
AK+K K +KK+++KK + +K K
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAK 40
Score = 34.2 bits (79), Expect = 0.033
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKKS 382
+ +K K +KK+++KK + +K K S
Sbjct: 17 IAKEKAKWEKKQEEKKSEAEKLAKMS 42
Score = 33.4 bits (77), Expect = 0.061
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
++ K+K K +KK+++KK + +K
Sbjct: 13 VDKAIAKEKAKWEKKQEEKKSEAEK 37
Score = 31.8 bits (73), Expect = 0.18
Identities = 4/25 (16%), Positives = 17/25 (68%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
++A++K + + +K +K+ ++ + +
Sbjct: 41 MSAEEKAEYELEKLEKELEELEAEL 65
Score = 31.5 bits (72), Expect = 0.23
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
A+K K ++K + + +K +K+
Sbjct: 35 AEKLAKMSAEEKAEYELEKLEKE 57
>gnl|CDD|240577 cd12950, RRP7_Rrp7p, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p) and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p. Rrp7p is encoded by YCL031C
gene from Saccharomyces cerevisiae. It is an essential
yeast protein involved in pre-rRNA processing and
ribosome assembly. Rrp7p contains an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 128
Score = 34.2 bits (79), Expect = 0.031
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 335 VTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKK------KKKKKKKK 381
VTV + P + K+K+KKKKKKK+ + ++KKK++
Sbjct: 54 VTVVRGGRKGPAAGEEAGKAAEEEKKEKEKKKKKKKELEDFYRFQLREKKKEE 106
Score = 30.3 bits (69), Expect = 0.76
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 350 VRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
VR A ++ K +++KK+K+KKKKKK
Sbjct: 57 VRGGRKGPAAGEEAGKAAEEEKKEKEKKKKKKK 89
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional.
Length = 330
Score = 35.2 bits (82), Expect = 0.043
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 348 RNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
++ + K K +KKK+K++ K K KS
Sbjct: 54 EELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKS 88
Score = 34.8 bits (81), Expect = 0.065
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
L A K +KKK+K++ K K K K
Sbjct: 66 LKAWHKAQKKKEKQEAKAAKAKSKP 90
Score = 34.0 bits (79), Expect = 0.11
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 360 KKKKKKKKKKKKKKKKKKKKK 380
K +KKK+K++ K K K K +
Sbjct: 71 KAQKKKEKQEAKAAKAKSKPR 91
Score = 34.0 bits (79), Expect = 0.11
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 361 KKKKKKKKKKKKKKKKKKKKK 381
K +KKK+K++ K K K K +
Sbjct: 71 KAQKKKEKQEAKAAKAKSKPR 91
Score = 34.0 bits (79), Expect = 0.12
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K +KKK+K++ K K K K
Sbjct: 68 AWHKAQKKKEKQEAKAAKAKSKP 90
Score = 31.7 bits (73), Expect = 0.52
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 359 AKKKKKKKKKKKKKKKKKKK 378
A+KKK+K++ K K K K +
Sbjct: 72 AQKKKEKQEAKAAKAKSKPR 91
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 34.6 bits (80), Expect = 0.061
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKKS 382
AKKKKKKKKKK KK ++
Sbjct: 179 ERAKKKKKKKKKKTKKNNATGSSAEA 204
Score = 34.2 bits (79), Expect = 0.070
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 7/35 (20%)
Query: 355 VTLN-------AKKKKKKKKKKKKKKKKKKKKKKS 382
V LN K + ++++ KKKKKKKKKK K
Sbjct: 160 VPLNPTEEEVELLKARLEEERAKKKKKKKKKKTKK 194
Score = 34.2 bits (79), Expect = 0.074
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K + ++++ KKKKKKKKKK KK+
Sbjct: 173 KARLEEERAKKKKKKKKKKTKKN 195
Score = 34.2 bits (79), Expect = 0.079
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 355 VTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
L ++ KKKKKKKKKK KK S
Sbjct: 174 ARLEEERAKKKKKKKKKKTKKNNATGSS 201
Score = 33.1 bits (76), Expect = 0.20
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKKKKS 382
L A+ ++++ KKKKKKKKKK KK +
Sbjct: 171 LLKARLEEERAKKKKKKKKKKTKKNNA 197
Score = 31.2 bits (71), Expect = 0.71
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
KKKKKKKKK KK + +
Sbjct: 183 KKKKKKKKKTKKNNATGSSAEAT 205
Score = 30.4 bits (69), Expect = 1.4
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
KKKKKKKK KK +
Sbjct: 181 AKKKKKKKKKKTKKNNATGSSAEAT 205
>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain. This region covers
both the Brf homology II and III regions. This region is
involved in binding TATA binding protein.
Length = 95
Score = 32.6 bits (75), Expect = 0.070
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
L K + KKKKK+K KKK+
Sbjct: 37 LKQKADEGNNSGKKKKKRKAKKKRD 61
Score = 31.8 bits (73), Expect = 0.11
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
K+K + KKKKK+K KKK
Sbjct: 36 ELKQKADEGNNSGKKKKKRKAKKK 59
Score = 31.5 bits (72), Expect = 0.18
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K+K + KKKKK+K KK
Sbjct: 37 LKQKADEGNNSGKKKKKRKAKKK 59
Score = 31.1 bits (71), Expect = 0.23
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
+K+ K+K + KKKKK+K+
Sbjct: 33 EEKELKQKADEGNNSGKKKKKRKA 56
Score = 31.1 bits (71), Expect = 0.25
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
+K + KKKKK+K KKK+
Sbjct: 39 QKADEGNNSGKKKKKRKAKKKRD 61
Score = 29.5 bits (67), Expect = 0.81
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
A + KKKKK+K KKK+ +
Sbjct: 41 ADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 28.0 bits (63), Expect = 2.3
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKK 378
KKKKK+K KKK+ +
Sbjct: 43 EGNNSGKKKKKRKAKKKRDEAG 64
Score = 28.0 bits (63), Expect = 2.4
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
+ KKKKK+K KKK+ +
Sbjct: 41 ADEGNNSGKKKKKRKAKKKRDEAGP 65
>gnl|CDD|151665 pfam11223, DUF3020, Protein of unknown function (DUF3020). This
family of fungal proteins is conserved towards the
C-terminus of HMG domains. The function is not known.
Length = 49
Score = 31.4 bits (71), Expect = 0.071
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKKS 382
N + + KKK KKK K+ K+K +
Sbjct: 18 DNDLRSRVKKKAKKKFGKEDSKEKDA 43
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 34.8 bits (81), Expect = 0.090
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
AK KK K +K K++ S
Sbjct: 829 AKDPAGKKAAVKFSRKTKQQYVAS 852
Score = 34.4 bits (80), Expect = 0.11
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
A K KK K +K K+
Sbjct: 825 ADAPAKDPAGKKAAVKFSRKTKQ 847
Score = 33.6 bits (78), Expect = 0.21
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
K KK K +K K++ +
Sbjct: 828 PAKDPAGKKAAVKFSRKTKQQYVA 851
Score = 33.2 bits (77), Expect = 0.22
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
K +K K++ +K K +
Sbjct: 835 KKAAVKFSRKTKQQYVASEKDGKAT 859
Score = 33.2 bits (77), Expect = 0.22
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
A K KK K +K K++
Sbjct: 827 APAKDPAGKKAAVKFSRKTKQQY 849
Score = 33.2 bits (77), Expect = 0.25
Identities = 6/23 (26%), Positives = 7/23 (30%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K KK K +K K
Sbjct: 824 LADAPAKDPAGKKAAVKFSRKTK 846
Score = 32.8 bits (76), Expect = 0.32
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
A KK K +K K++ +K
Sbjct: 833 AGKKAAVKFSRKTKQQYVASEKD 855
Score = 32.8 bits (76), Expect = 0.33
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
KK K +K K++ +K
Sbjct: 834 GKKAAVKFSRKTKQQYVASEKDG 856
Score = 32.1 bits (74), Expect = 0.51
Identities = 6/26 (23%), Positives = 7/26 (26%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKKS 382
K + K KK K S
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFS 842
Score = 32.1 bits (74), Expect = 0.52
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
KK K +K K++ +K
Sbjct: 832 PAGKKAAVKFSRKTKQQYVASEK 854
Score = 32.1 bits (74), Expect = 0.59
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
L K KK K +K K++
Sbjct: 824 LADAPAKDPAGKKAAVKFSRKTKQQ 848
Score = 31.7 bits (73), Expect = 0.77
Identities = 5/23 (21%), Positives = 6/23 (26%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K KK K +K
Sbjct: 823 YLADAPAKDPAGKKAAVKFSRKT 845
Score = 30.9 bits (71), Expect = 1.2
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
KK K +K K++ +
Sbjct: 831 DPAGKKAAVKFSRKTKQQYVASEK 854
Score = 30.9 bits (71), Expect = 1.2
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
L K +K + K KK
Sbjct: 814 LAEKPEKLRYLADAPAKDPAGKKAA 838
Score = 30.5 bits (70), Expect = 1.5
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
K KK K +K+
Sbjct: 822 RYLADAPAKDPAGKKAAVKFSRKT 845
Score = 29.8 bits (68), Expect = 3.0
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 355 VTLNAKKKKKKKKKKKKKKKKKKKKKK 381
+ L A+K +K + K KK
Sbjct: 811 LELLAEKPEKLRYLADAPAKDPAGKKA 837
Score = 29.4 bits (67), Expect = 4.0
Identities = 4/23 (17%), Positives = 6/23 (26%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
+ K KK K +
Sbjct: 821 LRYLADAPAKDPAGKKAAVKFSR 843
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 34.2 bits (79), Expect = 0.095
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
K++ KKKK K+ K K KK
Sbjct: 252 RKSKEEIKKKKPKESKGVKALKKV 275
Score = 31.1 bits (71), Expect = 0.73
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 354 SVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
S +K K++ KKKK K+ K K K
Sbjct: 246 SRAEKKRKSKEEIKKKKPKESKGVKALK 273
Score = 31.1 bits (71), Expect = 0.83
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
A+KK+K K++ KKKK K+ K K+
Sbjct: 248 AEKKRKSKEEIKKKKPKESKGVKA 271
Score = 30.8 bits (70), Expect = 1.2
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
KKKK K+ K K KK K
Sbjct: 257 EIKKKKPKESKGVKALKKVVAKGM 280
Score = 30.4 bits (69), Expect = 1.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
++ KKKK K+ K K KK
Sbjct: 256 EEIKKKKPKESKGVKALKKVVAK 278
Score = 28.8 bits (65), Expect = 4.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
+ +KK+K K++ KKKK K+ K
Sbjct: 245 ESRAEKKRKSKEEIKKKKPKESKGV 269
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 34.4 bits (79), Expect = 0.095
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
AK K + K +K K
Sbjct: 223 AKAAAAKAAAEAKAAAEKAAAAK 245
Score = 33.2 bits (76), Expect = 0.21
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
AKKK + K K + K
Sbjct: 215 AKKKAAAEAKAAAAKAAAEAKAA 237
>gnl|CDD|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein 7
homolog A (Rrp7A) and similar proteins. The family
corresponds to the RRP7 domain of Rrp7A, also termed
gastric cancer antigen Zg14, and similar proteins which
are yeast ribosomal RNA-processing protein 7 (Rrp7p)
homologs mainly found in Metazoans. The cellular
function of Rrp7A remains unclear currently. Rrp7A
harbors an N-terminal RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7
domain.
Length = 129
Score = 32.6 bits (75), Expect = 0.097
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 344 TPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
VT+ + K+ K +K+KKKKKKK+ K
Sbjct: 53 VTVTK--KGRRPKTARKESVAAKAAEKEKKKKKKKELK 88
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 33.9 bits (78), Expect = 0.11
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 325 IQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
I V++ + V T S + K+ K + KKK +KKKKKKK+K
Sbjct: 24 ISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEK 80
Score = 30.8 bits (70), Expect = 1.3
Identities = 21/72 (29%), Positives = 30/72 (41%)
Query: 311 IALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKK 370
+ LS S +Q S + V V + + + T K KK+ K +
Sbjct: 7 MILSFFSGTTQKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNES 66
Query: 371 KKKKKKKKKKKS 382
KKK +KKKKKK
Sbjct: 67 KKKSEKKKKKKK 78
Score = 30.1 bits (68), Expect = 1.9
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 317 SSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKK 376
S I+S + ++ + T D + S KKK+KK+ K + + K
Sbjct: 35 SKEILSTFSEEENKVATTSTKKDK--KEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLG 92
Query: 377 KKKKKS 382
K K
Sbjct: 93 FKTPKK 98
Score = 28.9 bits (65), Expect = 4.8
Identities = 15/69 (21%), Positives = 28/69 (40%)
Query: 314 SRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKK 373
+ ++ + SE V + T + +N + + KKKKK+KK+ K +
Sbjct: 28 YSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEG 87
Query: 374 KKKKKKKKS 382
+ K K
Sbjct: 88 ETKLGFKTP 96
>gnl|CDD|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function
(DUF1764). This is a family of eukaryotic proteins of
unknown function. This family contains many hypothetical
proteins.
Length = 98
Score = 32.1 bits (73), Expect = 0.11
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
N KK+KKKKK+ K + K KK
Sbjct: 20 NIKKRKKKKKRTAKTARPKATKKG 43
Score = 30.5 bits (69), Expect = 0.37
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 349 NVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
+ + K + K KK +KK KKK
Sbjct: 19 SNIKKRKKKKKRTAKTARPKATKKGQKKDKKKD 51
Score = 30.5 bits (69), Expect = 0.42
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKKS 382
+ KK+KKKKK+ K + K KK
Sbjct: 18 FSNIKKRKKKKKRTAKTARPKATKKG 43
Score = 29.7 bits (67), Expect = 0.78
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
+KKKKK+ K + K KK +K
Sbjct: 23 KRKKKKKRTAKTARPKATKKGQKK 46
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 33.7 bits (77), Expect = 0.13
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 340 TPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
+ P + V+ + K K K KK KKK +
Sbjct: 137 ISTAPPEAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSV 178
Score = 28.7 bits (64), Expect = 5.5
Identities = 12/61 (19%), Positives = 17/61 (27%)
Query: 322 SPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
+P V +S P + + K K KK KKK + K
Sbjct: 122 NPYGTREMHHLEVPPISTAPPEAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMP 181
Query: 382 S 382
Sbjct: 182 G 182
>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional.
Length = 177
Score = 33.0 bits (76), Expect = 0.14
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 14/58 (24%)
Query: 338 SDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKK--------------KKKKKKKKKK 381
S +S + ++ + L+A+ +++K+KKK K K K + +KK
Sbjct: 5 SSPKRSKGMAKSKKKTREELDAEARERKRKKKHKGLKSGSRHNEGNTQSKGKGQAQKK 62
Score = 30.3 bits (69), Expect = 0.99
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 363 KKKKKKKKKKKKKKKKKKKS 382
KKKK K+ K K KKK+
Sbjct: 1 KKKKSSPKRSKGMAKSKKKT 20
>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich
region. This highly conserved region is found towards
the C-terminus of the transmembrane domain. The function
is unclear.
Length = 151
Score = 32.6 bits (74), Expect = 0.14
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 351 RTHSVTLNAKKKKKKKKKKKKKKKKKKK 378
+T S + KKK+K +KK K KKK++K
Sbjct: 19 KTQSQKSDKKKKEKVSEKKGKSKKKEEK 46
Score = 32.3 bits (73), Expect = 0.21
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 360 KKKKKKKKKKKKKKKKKKKK 379
KKKK+K +KK K KKK++K
Sbjct: 27 KKKKEKVSEKKGKSKKKEEK 46
Score = 32.3 bits (73), Expect = 0.21
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 361 KKKKKKKKKKKKKKKKKKKK 380
KKKK+K +KK K KKK++K
Sbjct: 27 KKKKEKVSEKKGKSKKKEEK 46
Score = 32.3 bits (73), Expect = 0.21
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 362 KKKKKKKKKKKKKKKKKKKK 381
KKKK+K +KK K KKK++K
Sbjct: 27 KKKKEKVSEKKGKSKKKEEK 46
Score = 31.9 bits (72), Expect = 0.23
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKK 379
T + K KKKK+K +KK K KKK
Sbjct: 20 TQSQKSDKKKKEKVSEKKGKSKKK 43
Score = 31.1 bits (70), Expect = 0.42
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
+K KKKK+K +KK K KKK
Sbjct: 20 TQSQKSDKKKKEKVSEKKGKSKKK 43
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 33.0 bits (76), Expect = 0.15
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
AKK++ +K+K ++++K K K
Sbjct: 119 AKKREAAGEKEKAPRRERKPKPK 141
Score = 33.0 bits (76), Expect = 0.16
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
A +K+K ++++K K K +KK
Sbjct: 124 AAGEKEKAPRRERKPKPKAPRKKR 147
Score = 33.0 bits (76), Expect = 0.18
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
A +K+K ++++K K K +KK+
Sbjct: 125 AGEKEKAPRRERKPKPKAPRKKRK 148
Score = 32.2 bits (74), Expect = 0.27
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
+K ++++K K K +KK+K ++
Sbjct: 127 EKEKAPRRERKPKPKAPRKKRKPRA 151
Score = 32.2 bits (74), Expect = 0.30
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
+K+K ++++K K K +KK+K
Sbjct: 126 GEKEKAPRRERKPKPKAPRKKRKP 149
Score = 32.2 bits (74), Expect = 0.34
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
K+K ++++K K K +KK+K
Sbjct: 126 GEKEKAPRRERKPKPKAPRKKRKP 149
Score = 31.8 bits (73), Expect = 0.39
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
KK++ +K+K ++++K K
Sbjct: 117 QQAKKREAAGEKEKAPRRERKPKP 140
Score = 31.4 bits (72), Expect = 0.52
Identities = 5/24 (20%), Positives = 16/24 (66%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
A++ +++ KK++ +K+K ++
Sbjct: 112 AQRAEQQAKKREAAGEKEKAPRRE 135
Score = 31.0 bits (71), Expect = 0.63
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
K ++++K K K +KK+K +
Sbjct: 129 EKAPRRERKPKPKAPRKKRKPRAQ 152
Score = 31.0 bits (71), Expect = 0.72
Identities = 6/23 (26%), Positives = 17/23 (73%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
A+++ KK++ +K+K ++++K
Sbjct: 115 AEQQAKKREAAGEKEKAPRRERK 137
Score = 30.7 bits (70), Expect = 1.0
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 351 RTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
R + ++++K K K +KK+K + +
Sbjct: 122 REAAGEKEKAPRRERKPKPKAPRKKRKPRAQ 152
Score = 30.7 bits (70), Expect = 1.1
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
A ++++K K K +KK+K + +K
Sbjct: 130 KAPRRERKPKPKAPRKKRKPRAQK 153
Score = 29.9 bits (68), Expect = 1.6
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
K++ +K+K ++++K K K
Sbjct: 120 KKREAAGEKEKAPRRERKPKPKAP 143
Score = 29.5 bits (67), Expect = 2.1
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
+++K K K +KK+K + +K +
Sbjct: 133 RRERKPKPKAPRKKRKPRAQKPE 155
Score = 29.1 bits (66), Expect = 3.0
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
++++K K K +KK+K + +K
Sbjct: 132 PRRERKPKPKAPRKKRKPRAQKP 154
Score = 28.7 bits (65), Expect = 3.8
Identities = 4/23 (17%), Positives = 14/23 (60%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
++ +++ KK++ +K+K +
Sbjct: 111 QAQRAEQQAKKREAAGEKEKAPR 133
Score = 28.4 bits (64), Expect = 5.4
Identities = 4/24 (16%), Positives = 14/24 (58%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
+ ++ +++ KK++ +K+K
Sbjct: 110 VQAQRAEQQAKKREAAGEKEKAPR 133
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 33.2 bits (76), Expect = 0.18
Identities = 12/90 (13%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 302 IYKEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVT----- 356
Y+E RQ+ + + +E ++ V++ +
Sbjct: 133 KYEEWCRQKAQQAAKQR--TPKHKKEAAESASSSLSGSAKPERNVSQEEAKKRLQEWELK 190
Query: 357 ----LNAKKKKKKKKKKKKKKKKKKKKKKS 382
K++++++K++KK+++++++K+K+
Sbjct: 191 KLKQQQQKREEERRKQRKKQQEEEERKQKA 220
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 33.5 bits (77), Expect = 0.20
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 4/28 (14%)
Query: 358 NAKKKKKKKKKKKKKKKK----KKKKKK 381
KK+KKK+K+K++ K KK+K+K
Sbjct: 625 GIKKRKKKRKRKRRFLTKIEGVKKEKRK 652
Score = 32.3 bits (74), Expect = 0.53
Identities = 13/55 (23%), Positives = 24/55 (43%)
Query: 323 PVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKK 377
P +++TS D+ + + + + ++ A K KKKKKK+K
Sbjct: 495 PWLKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDD 549
Score = 31.6 bits (72), Expect = 0.86
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
+ +KKK+K+K++ K + KK+K
Sbjct: 626 IKKRKKKRKRKRRFLTKIEGVKKEK 650
Score = 31.6 bits (72), Expect = 0.87
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 354 SVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
N K K KKKKKK+K
Sbjct: 521 DKAANKISKAAVKVKKKKKKEKSIDLDD 548
Score = 30.4 bits (69), Expect = 1.7
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 354 SVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
+ A K K K KKKKKK+K
Sbjct: 519 KLDKAANKISKAAVKVKKKKKKEKSIDLD 547
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I
and type II cytokines. It interacts with the gamma chain
of type I cytokine receptors to elicit signals from the
IL-2 receptor family, the IL-4 receptor family, the
gp130 receptor family, ciliary neurotrophic factor
receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and
Leptin-R). It also is involved in transducing a signal
by type I (IFN-alpha/beta) and type II (IFN-gamma)
interferons, and members of the IL-10 family via type II
cytokine receptors. JAK (also called Just Another
Kinase) is a family of intracellular, non-receptor
tyrosine kinases that transduce cytokine-mediated
signals via the JAK-STAT pathway. The JAK family in
mammals consists of 4 members: JAK1, JAK2, JAK3 and
TYK2. JAKs are composed of seven JAK homology (JH)
domains (JH1-JH7) . The C-terminal JH1 domain is the
main catalytic domain, followed by JH2, which is often
referred to as a pseudokinase domain, followed by
JH3-JH4 which is homologous to the SH2 domain, and
lastly JH5-JH7 which is a FERM domain. Named after
Janus, the two-faced Roman god of doorways, JAKs possess
two near-identical phosphate-transferring domains; one
which displays the kinase activity (JH1), while the
other negatively regulates the kinase activity of the
first (JH2). The FERM domain has a cloverleaf tripart
structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH
domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 32.5 bits (74), Expect = 0.21
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 351 RTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
R + T KKKK K KK K K KK + KKK+
Sbjct: 82 RKPATTAVEKKKKGKSKKNKLKGKKDEDKKKA 113
Score = 30.6 bits (69), Expect = 1.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
KK K KK K K KK + KKK +
Sbjct: 93 KKGKSKKNKLKGKKDEDKKKARE 115
Score = 29.4 bits (66), Expect = 2.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 352 THSVTLNAKKKKKKKKKKKKKKKKKKKKK 380
T +V K K KK K K KK + KKK +
Sbjct: 86 TTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
>gnl|CDD|234707 PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.
Length = 64
Score = 30.2 bits (69), Expect = 0.21
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 351 RTHSVTLNAKKKKKKKKKKKKKKKKKKK 378
R + K+K+KK +K+++KK +
Sbjct: 35 REFYEKPSEKRKRKKAAARKRRRKKLAR 62
Score = 29.8 bits (68), Expect = 0.33
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 363 KKKKKKKKKKKKKKKKKKKS 382
K+K+KK +K+++KK +
Sbjct: 44 KRKRKKAAARKRRRKKLARE 63
Score = 29.8 bits (68), Expect = 0.33
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 360 KKKKKKKKKKKKKKKKKKKKK 380
K +K+K+KK +K+++KK
Sbjct: 40 KPSEKRKRKKAAARKRRRKKL 60
Score = 29.8 bits (68), Expect = 0.33
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 361 KKKKKKKKKKKKKKKKKKKKK 381
K +K+K+KK +K+++KK
Sbjct: 40 KPSEKRKRKKAAARKRRRKKL 60
Score = 29.8 bits (68), Expect = 0.35
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 361 KKKKKKKKKKKKKKKKKKK 379
K+K+KK +K+++KK +
Sbjct: 44 KRKRKKAAARKRRRKKLAR 62
Score = 29.8 bits (68), Expect = 0.35
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 362 KKKKKKKKKKKKKKKKKKK 380
K+K+KK +K+++KK +
Sbjct: 44 KRKRKKAAARKRRRKKLAR 62
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 33.4 bits (77), Expect = 0.21
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
+KK++K +KK +K++ +K K
Sbjct: 414 LRKKQRKAEKKAEKEEAEKAAAKK 437
Score = 33.0 bits (76), Expect = 0.29
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
L+ ++KK +KK++K +KK +K++
Sbjct: 406 LSPAERKKLRKKQRKAEKKAEKEEA 430
Score = 33.0 bits (76), Expect = 0.30
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
+KK +KK++K +KK +K++ +K
Sbjct: 411 RKKLRKKQRKAEKKAEKEEAEK 432
Score = 32.6 bits (75), Expect = 0.34
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKK 380
KK +KK++K +KK +K++ +K
Sbjct: 411 RKKLRKKQRKAEKKAEKEEAEK 432
Score = 32.2 bits (74), Expect = 0.51
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
A++KK +KK++K +KK +K++ +
Sbjct: 409 AERKKLRKKQRKAEKKAEKEEAE 431
Score = 31.8 bits (73), Expect = 0.61
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K++K +KK +K++ +K KKK+
Sbjct: 417 KQRKAEKKAEKEEAEKAAAKKKA 439
Score = 31.8 bits (73), Expect = 0.67
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 345 PVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
P+ ++KK +KK++K +KK +K
Sbjct: 391 PLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEK 427
Score = 31.1 bits (71), Expect = 0.96
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
+K +KK +K++ +K KKK +
Sbjct: 418 QRKAEKKAEKEEAEKAAAKKKAE 440
Score = 30.7 bits (70), Expect = 1.6
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKKS 382
++K +KK +K++ +K KKK
Sbjct: 415 RKKQRKAEKKAEKEEAEKAAAKKKAE 440
Score = 30.3 bits (69), Expect = 1.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
A+K++ +K KKK + KK K
Sbjct: 425 AEKEEAEKAAAKKKAEAAAKKAKG 448
Score = 29.1 bits (66), Expect = 4.1
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
KK +K++ +K KKK + K
Sbjct: 422 EKKAEKEEAEKAAAKKKAEAAAKK 445
>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992). This
bacterial family of proteins has no known function.
However, the cis-regulatory yjdF motif, just upstream
from the gene encoding the proteins for this family, is
a small non-coding RNA, Rfam:RF01764. The yjdF motif is
found in many Firmicutes, including Bacillus subtilis.
In most cases, it resides in potential 5' UTRs of
homologues of the yjdF gene whose function is unknown.
However, in Streptococcus thermophilus, a yjdF RNA motif
is associated with an operon whose protein products
synthesise nicotinamide adenine dinucleotide (NAD+).
Also, the S. thermophilus yjdF RNA lacks typical yjdF
motif consensus features downstream of and including the
P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the
S. thermophilus RNAs might sense a distinct compound
that structurally resembles the ligand bound by other
yjdF RNAs. On the ohter hand, perhaps these RNAs have an
alternative solution forming a similar binding site, as
is observed with some SAM riboswitches.
Length = 132
Score = 31.8 bits (73), Expect = 0.22
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 9/34 (26%)
Query: 357 LNAKKKKKKKKKKK---------KKKKKKKKKKK 381
N ++KKK+ K+KK K++KKK K +
Sbjct: 97 RNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
Score = 31.5 bits (72), Expect = 0.27
Identities = 9/22 (40%), Positives = 20/22 (90%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
++ K++KKK+ K+KK+++K++K
Sbjct: 96 ERNKQEKKKRSKEKKEEEKERK 117
Score = 27.6 bits (62), Expect = 5.3
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
A K + ++ K++KKK+ K+KK++
Sbjct: 89 QALKLEHERNKQEKKKRSKEKKEE 112
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 33.3 bits (76), Expect = 0.23
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 333 AVVT-VSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
AV+T + TP+ TP + + + + K K K KKK K K KK KK
Sbjct: 734 AVITKYAGTPK-TPYEKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKK 782
Score = 30.9 bits (70), Expect = 1.3
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K KKK K K K KKK K+
Sbjct: 752 KAKKKSASTKGKAAKTVKKKSKA 774
Score = 30.9 bits (70), Expect = 1.4
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 340 TPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKK 379
TP ++ S A K KKK K K KK KK+
Sbjct: 745 TPYEKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 29.8 bits (67), Expect = 2.7
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
KK K KKK K K K KK
Sbjct: 749 KKTKAKKKSASTKGKAAKTVKKK 771
Score = 29.8 bits (67), Expect = 2.7
Identities = 13/24 (54%), Positives = 13/24 (54%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
AKKK K K K KKK K KS
Sbjct: 753 AKKKSASTKGKAAKTVKKKSKAKS 776
Score = 29.0 bits (65), Expect = 4.9
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K K KKK K K K KKKS
Sbjct: 750 KTKAKKKSASTKGKAAKTVKKKS 772
Score = 29.0 bits (65), Expect = 5.9
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
+KK K KKK K K K K
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKK 770
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 32.0 bits (73), Expect = 0.25
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 327 STSEGSAVVTVSD------TPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKK--KKKK 378
+ S A VT+++ P+ + + + K KK+KK+KK+KK +K
Sbjct: 72 TNSYKKAYVTLAEGYSINLFPEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLA 131
Query: 379 KKK 381
KKK
Sbjct: 132 KKK 134
Score = 30.9 bits (70), Expect = 0.63
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
K++K+ K+ ++K+ K KK+K
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKK 119
Score = 30.5 bits (69), Expect = 0.71
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
++K+ K+ ++K+ K KK+KK
Sbjct: 98 EQKEVSKETEEKEAIKAKKEKKE 120
Score = 30.5 bits (69), Expect = 0.78
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 329 SEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
+EG ++ + + + T KK+KK+KK+KK +K KKK +
Sbjct: 83 AEGYSINLFPEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKST 136
>gnl|CDD|220231 pfam09420, Nop16, Ribosome biogenesis protein Nop16. Nop16 is a
protein involved in ribosome biogenesis.
Length = 173
Score = 32.0 bits (73), Expect = 0.26
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 361 KKKKKKKKKKKKKKKKKKKKKS 382
+KKKK + K +K+ K+K
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRKD 23
Score = 32.0 bits (73), Expect = 0.29
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 360 KKKKKKKKKKKKKKKKKKKKK 380
+KKKK + K +K+ K+K
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRK 22
Score = 31.3 bits (71), Expect = 0.55
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
KKKK + K +K+ K+K +
Sbjct: 3 KKKKNRSSNYKVNRKRLKRKDR 24
Score = 30.9 bits (70), Expect = 0.63
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
KK + K +K+ K+K +KK
Sbjct: 5 KKNRSSNYKVNRKRLKRKDRKKK 27
Score = 30.9 bits (70), Expect = 0.67
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
KKK + K +K+ K+K +K
Sbjct: 4 KKKNRSSNYKVNRKRLKRKDRK 25
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 33.0 bits (75), Expect = 0.28
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K KKKKKK K KKK KK
Sbjct: 239 EKSKKKKKKLAKNKKKLDDDKKG 261
Score = 32.6 bits (74), Expect = 0.38
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
KKKKKK K KKK KK K
Sbjct: 240 KSKKKKKKLAKNKKKLDDDKKGK 262
Score = 32.2 bits (73), Expect = 0.46
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
+ KKKKK K KKK KK K+
Sbjct: 241 SKKKKKKLAKNKKKLDDDKKGKRGG 265
Score = 31.9 bits (72), Expect = 0.61
Identities = 11/21 (52%), Positives = 11/21 (52%)
Query: 362 KKKKKKKKKKKKKKKKKKKKS 382
KK KK KK K KK K S
Sbjct: 336 KKGKKLKKLKGKKNGLDKDDS 356
Score = 31.1 bits (70), Expect = 1.1
Identities = 10/23 (43%), Positives = 10/23 (43%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
KK KK KK K KK K
Sbjct: 333 GLSKKGKKLKKLKGKKNGLDKDD 355
>gnl|CDD|193409 pfam12936, Kri1_C, KRI1-like family C-terminal. The yeast member
of this family (Kri1p) is found to be required for 40S
ribosome biogenesis in the nucleolus. This is the
C-terminal domain of the family.
Length = 93
Score = 30.6 bits (70), Expect = 0.29
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
++++K KKK KK + ++ KKK
Sbjct: 69 KEERRKDKKKYGKKARLREWKKKV 92
Score = 27.9 bits (63), Expect = 2.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
++K KKK KK + ++ KKK
Sbjct: 72 RRKDKKKYGKKARLREWKKKVF 93
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 32.3 bits (74), Expect = 0.29
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 351 RTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
++++ KKKKKK KKKK KK K+
Sbjct: 174 KSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 28.4 bits (64), Expect = 5.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 355 VTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
+ +++KKKKKKK KKKK KK +
Sbjct: 172 KKKSNNAEEEKKKKKKKSAKKKKLKKVA 199
Score = 27.7 bits (62), Expect = 8.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 348 RNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
+ + KKK +++KKKKKKK KK
Sbjct: 159 KELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKK 192
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 32.8 bits (75), Expect = 0.30
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKKK 380
+N + K+K K ++ K+K++K+
Sbjct: 268 PINKPVRPKRKTKAQRNKEKRRKEL 292
Score = 32.0 bits (73), Expect = 0.52
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
+ K+K K ++ K+K++K+ ++
Sbjct: 270 NKPVRPKRKTKAQRNKEKRRKELER 294
Score = 30.8 bits (70), Expect = 1.2
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K+K K ++ K+K++K+ +++ K
Sbjct: 275 PKRKTKAQRNKEKRRKELEREAK 297
Score = 30.4 bits (69), Expect = 1.6
Identities = 7/23 (30%), Positives = 19/23 (82%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
A++ K+K++K+ +++ K++K+ K
Sbjct: 281 AQRNKEKRRKELEREAKEEKQLK 303
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 33.0 bits (76), Expect = 0.30
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKKS 382
A+KK++++KK+KKKK KKK+
Sbjct: 417 EKAEKKREEEKKEKKKKAFAGKKKEE 442
Score = 31.8 bits (73), Expect = 0.55
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
A KK KK +K +KK++++KK+K
Sbjct: 408 ATKKIKKIVEKAEKKREEEKKEKK 431
Score = 31.4 bits (72), Expect = 0.77
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
+K +KK++++KK+KKKK K
Sbjct: 416 VEKAEKKREEEKKEKKKKAFAGKK 439
Score = 31.4 bits (72), Expect = 0.88
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K KK +K +KK++++KK+KKK
Sbjct: 411 KIKKIVEKAEKKREEEKKEKKKK 433
Score = 31.0 bits (71), Expect = 0.97
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
KK +K +KK++++KK+KKKK
Sbjct: 410 KKIKKIVEKAEKKREEEKKEKKKK 433
Score = 31.0 bits (71), Expect = 1.1
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
KK +K +KK++++KK+KKKK
Sbjct: 413 KKIVEKAEKKREEEKKEKKKKA 434
Score = 31.0 bits (71), Expect = 1.1
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 354 SVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
+ + +K +KK++++KK+KKKK
Sbjct: 409 TKKIKKIVEKAEKKREEEKKEKKKKAFA 436
Score = 30.7 bits (70), Expect = 1.3
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
K +K +KK++++KK+KKKK +
Sbjct: 413 KKIVEKAEKKREEEKKEKKKKAFA 436
Score = 30.7 bits (70), Expect = 1.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKKS 382
+KK KK KK +K +KK++++K
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKK 428
Score = 30.7 bits (70), Expect = 1.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
L KK KK KK +K +KK++++
Sbjct: 402 LTGSKKATKKIKKIVEKAEKKREEE 426
Score = 30.3 bits (69), Expect = 1.7
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 355 VTLNAKKKKKKKKKKKKKKKKKKKKKK 381
+T + K KK KK +K +KK++++KK
Sbjct: 402 LTGSKKATKKIKKIVEKAEKKREEEKK 428
Score = 30.3 bits (69), Expect = 2.1
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K++++KK+KKKK KKK+++
Sbjct: 422 KREEEKKEKKKKAFAGKKKEEEE 444
Score = 29.9 bits (68), Expect = 2.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
KK KK +K +KK++++KK+
Sbjct: 407 KATKKIKKIVEKAEKKREEEKKEK 430
Score = 29.1 bits (66), Expect = 3.8
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
+++KK+KKKK KKK+++++
Sbjct: 424 EEEKKEKKKKAFAGKKKEEEEEE 446
Score = 29.1 bits (66), Expect = 4.2
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
++KK+KKKK KKK++++++
Sbjct: 425 EEKKEKKKKAFAGKKKEEEEEEE 447
Score = 29.1 bits (66), Expect = 4.7
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
KKKK KKK+++++++K+KK
Sbjct: 429 EKKKKAFAGKKKEEEEEEEKEKKE 452
Score = 28.7 bits (65), Expect = 5.5
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
KK+KKKK KKK+++++++K
Sbjct: 426 EKKEKKKKAFAGKKKEEEEEEEK 448
Score = 28.3 bits (64), Expect = 7.0
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K+KKKK KKK+++++++K+
Sbjct: 427 KKEKKKKAFAGKKKEEEEEEEKE 449
Score = 28.3 bits (64), Expect = 7.1
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
+KK+KKKK KKK+++++++
Sbjct: 426 EKKEKKKKAFAGKKKEEEEEEEK 448
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 32.8 bits (75), Expect = 0.32
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
+A + +KK K K KK +K KK S
Sbjct: 767 SAFRGEKKAKPKAAKKDARKAKKPS 791
Score = 30.5 bits (69), Expect = 1.6
Identities = 12/32 (37%), Positives = 13/32 (40%)
Query: 349 NVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKK 380
N S KK K K KK +K KK K
Sbjct: 762 NFEPDSAFRGEKKAKPKAAKKDARKAKKPSAK 793
Score = 30.5 bits (69), Expect = 1.6
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K K KK +K KK K +K
Sbjct: 774 KAKPKAAKKDARKAKKPSAKTQK 796
Score = 30.5 bits (69), Expect = 1.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
+KK K K KK +K KK K+
Sbjct: 771 GEKKAKPKAAKKDARKAKKPSAKT 794
>gnl|CDD|218612 pfam05501, DUF755, Domain of unknown function (DUF755). This
family is predominated by ORFs from Circoviridae. The
function of this family remains to be determined.
Length = 122
Score = 31.2 bits (71), Expect = 0.33
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 342 QSTPVTRNVRTHSVTLNAKKKKKK---KKKKKKKKKKKKKKKKS 382
Q + + S T K+KK + + KK KK+++ S
Sbjct: 63 QPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSSS 106
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 32.6 bits (74), Expect = 0.33
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 19/94 (20%)
Query: 305 EAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNV-------------- 350
E + +R+A R + P++ SE ++TV VTR +
Sbjct: 145 EVLAKRLASYRAQT---EPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGAANAKK 201
Query: 351 --RTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
+T + AKK K K KK KKK K +
Sbjct: 202 AAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTA 235
Score = 32.2 bits (73), Expect = 0.47
Identities = 13/79 (16%), Positives = 24/79 (30%)
Query: 304 KEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKK 363
++ ++++ + + VS + + A T + A K
Sbjct: 219 AKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAA 278
Query: 364 KKKKKKKKKKKKKKKKKKS 382
K K K K K K K
Sbjct: 279 AKAAKGAAKATKGKAKAKK 297
Score = 31.4 bits (71), Expect = 0.68
Identities = 14/50 (28%), Positives = 19/50 (38%)
Query: 331 GSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKK 380
S S +S + + + T + KK K K KK KK KK
Sbjct: 209 KSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKK 258
>gnl|CDD|219132 pfam06678, DUF1179, Protein of unknown function (DUF1179). This
family consists of several hypothetical Caenorhabditis
elegans proteins of around 106 residues in length. The
function of the family is unknown.
Length = 108
Score = 30.8 bits (69), Expect = 0.35
Identities = 19/60 (31%), Positives = 24/60 (40%)
Query: 321 VSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKK 380
V+P Q S T P TP+ R+ + TL K +K KKKKKK
Sbjct: 49 VTPPPQKESSNQTCPTSQTPPARTPIERSGKVAEDTLANVKSLPPEKSDDADGPKKKKKK 108
>gnl|CDD|192292 pfam09429, Wbp11, WW domain binding protein 11. The WW domain is a
small protein module with a triple-stranded beta-sheet
fold. This is a family of WW domain binding proteins.
Length = 78
Score = 29.9 bits (68), Expect = 0.39
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 359 AKKKKKKKKKKKKKKKKKK 377
+K++KKK+ KK K +++
Sbjct: 10 YRKEQKKKELKKNKAERQA 28
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 31.2 bits (71), Expect = 0.39
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 326 QSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKK---KKKKKKKKKKKKKKKKKKK 381
+ + +P ST N + K+ +KK K+K ++ K K KK++
Sbjct: 25 LKKASKKKKKRSNSSPGSTSNEENEDEDDESTAESKRPEGRKKAKEKLRRDKLKAKKEE 83
Score = 30.0 bits (68), Expect = 0.92
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
AK+K ++ K K KK++ +K+K+K
Sbjct: 68 AKEKLRRDKLKAKKEEAEKEKEK 90
Score = 28.9 bits (65), Expect = 2.3
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 9/68 (13%)
Query: 316 TSSNIVSPVIQSTSEG--SAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKK 373
+S S+ + D + R KK K+K ++ K K
Sbjct: 27 KASKKKKKRSNSSPGSTSNEENEDEDDESTAESKR-------PEGRKKAKEKLRRDKLKA 79
Query: 374 KKKKKKKK 381
KK++ +K+
Sbjct: 80 KKEEAEKE 87
>gnl|CDD|219947 pfam08639, SLD3, DNA replication regulator SLD3. The SLD3 DNA
replication regulator is required for loading and
maintenance of Cdc45 on chromatin during DNA
replication.
Length = 437
Score = 32.5 bits (74), Expect = 0.41
Identities = 16/67 (23%), Positives = 35/67 (52%)
Query: 314 SRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKK 373
SRT+S+++ + + +SE S T + ++ V L+ ++ ++K KKK+
Sbjct: 298 SRTNSSLIEFLKRESSENLLPSLSSRTSSDLLKNKRLQKRQVDLSDSSRQHEEKLKKKQM 357
Query: 374 KKKKKKK 380
++KK+
Sbjct: 358 LNEQKKE 364
>gnl|CDD|149515 pfam08492, SRP72, SRP72 RNA-binding domain. This region has been
identified as the binding site of the SRP72 protein to
SRP RNA.
Length = 57
Score = 29.3 bits (66), Expect = 0.42
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKK 380
AKKK ++KKKK KKK+K K
Sbjct: 9 AKKKPGTEQKKKKSAKKKRKPK 30
Score = 29.0 bits (65), Expect = 0.56
Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 6/29 (20%)
Query: 359 AKKKKKKKKK------KKKKKKKKKKKKK 381
AKK KK KK KKKK KKK+K K
Sbjct: 2 AKKPKKIAKKKPGTEQKKKKSAKKKRKPK 30
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 32.4 bits (73), Expect = 0.44
Identities = 3/21 (14%), Positives = 10/21 (47%)
Query: 359 AKKKKKKKKKKKKKKKKKKKK 379
A K + + + + ++K +
Sbjct: 1347 AAKAEAEAAADEAEAAEEKAE 1367
Score = 32.4 bits (73), Expect = 0.51
Identities = 3/24 (12%), Positives = 12/24 (50%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
A+ K + + + + ++K ++
Sbjct: 1345 AEAAKAEAEAAADEAEAAEEKAEA 1368
Score = 32.0 bits (72), Expect = 0.56
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 359 AKKKKKKKKKKKKKKKKKK---KKKKS 382
AK + + + + ++K +KKK
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAEKKKE 1374
Score = 32.0 bits (72), Expect = 0.62
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
AKKK ++ KK + K + +
Sbjct: 1334 AKKKAEEAKKAAEAAKAEAEAAA 1356
Score = 31.6 bits (71), Expect = 0.87
Identities = 5/26 (19%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 359 AKKK---KKKKKKKKKKKKKKKKKKK 381
AKK K + + + + ++K
Sbjct: 1341 AKKAAEAAKAEAEAAADEAEAAEEKA 1366
Score = 31.3 bits (70), Expect = 1.1
Identities = 3/23 (13%), Positives = 10/23 (43%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
+ KK + K + + + + +
Sbjct: 1340 EAKKAAEAAKAEAEAAADEAEAA 1362
Score = 30.9 bits (69), Expect = 1.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
AKKK ++ KK + KKK ++ KK+
Sbjct: 1461 EAKKKAEEAKKADEAKKKAEEAKKA 1485
Score = 30.5 bits (68), Expect = 1.8
Identities = 4/24 (16%), Positives = 12/24 (50%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
A++ KK + K + + + ++
Sbjct: 1338 AEEAKKAAEAAKAEAEAAADEAEA 1361
Score = 30.5 bits (68), Expect = 2.0
Identities = 4/26 (15%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 360 KKKK---KKKKKKKKKKKKKKKKKKS 382
KK K + + + + ++K+
Sbjct: 1341 AKKAAEAAKAEAEAAADEAEAAEEKA 1366
Score = 30.1 bits (67), Expect = 2.3
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 358 NAKKKKKKKKKKK---KKKKKKKKKKK 381
+A KKK ++ KK K + + +
Sbjct: 1332 DAAKKKAEEAKKAAEAAKAEAEAAADE 1358
Score = 30.1 bits (67), Expect = 2.4
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
A + + ++K + +KKK++ KK
Sbjct: 1356 ADEAEAAEEKAEAAEKKKEEAKK 1378
Score = 30.1 bits (67), Expect = 2.7
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 359 AKKKKKKKKKKKKKKKKKKKK 379
A+ ++K + +KKK++ KKK
Sbjct: 1359 AEAAEEKAEAAEKKKEEAKKK 1379
Score = 30.1 bits (67), Expect = 2.7
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
+ + ++K + +KKK++ KKK+
Sbjct: 1358 EAEAAEEKAEAAEKKKEEAKKKA 1380
>gnl|CDD|238296 cd00531, NTF2_like, Nuclear transport factor 2 (NTF2-like)
superfamily. This family includes members of the NTF2
family, Delta-5-3-ketosteroid isomerases, Scytalone
Dehydratases, and the beta subunit of Ring hydroxylating
dioxygenases. This family is a classic example of
divergent evolution wherein the proteins have many
common structural details but diverge greatly in their
function. For example, nuclear transport factor 2
(NTF2) mediates the nuclear import of RanGDP and binds
to both RanGDP and FxFG repeat-containing nucleoporins
while Ketosteroid isomerases catalyze the isomerization
of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by
intramolecular transfer of the C4-beta proton to the
C6-beta position. While the function of the beta
sub-unit of the Ring hydroxylating dioxygenases is not
known, Scytalone Dehydratases catalyzes two reactions in
the biosynthetic pathway that produces fungal melanin.
Members of the NTF2-like superfamily are widely
distributed among bacteria, archaea and eukaryotes.
Length = 124
Score = 30.9 bits (70), Expect = 0.45
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 286 ISFWIPGFVMVTMYYRIYKEAVRQRIA-----LSRTSSNIVSPVIQSTSEGSAVVTVS 338
+++ P +Y +EA+ R+ SRT + + +Q +G VV
Sbjct: 27 DAYFEPPGGDGLIYPDDGREAIEDRVRRLPFGPSRTRHLVSNVDVQPGDDGEGVVVSV 84
>gnl|CDD|220376 pfam09745, DUF2040, Coiled-coil domain-containing protein 55
(DUF2040). This entry is a conserved domain of
approximately 130 residues of proteins conserved from
fungi to humans. The proteins do contain a coiled-coil
domain, but the function is unknown.
Length = 128
Score = 30.8 bits (70), Expect = 0.50
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K K++KK+ K ++K+ +K
Sbjct: 26 SIKAAKEEKKQAKLSERKENRKP 48
>gnl|CDD|227935 COG5648, NHP6B, Chromatin-associated proteins containing the HMG
domain [Chromatin structure and dynamics].
Length = 211
Score = 31.4 bits (71), Expect = 0.53
Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 9/85 (10%)
Query: 299 YYRIYK------EAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQST--PVTRNV 350
YY+ + ++ + + P I++ + V P T+ +
Sbjct: 120 YYKEANSDRERYQREKEEYNKKLPNKAPIGPFIENEPKIRPKVEGPS-PDKALVEETKII 178
Query: 351 RTHSVTLNAKKKKKKKKKKKKKKKK 375
L+ KKKK K KK K++
Sbjct: 179 SKAWSELDESKKKKYIDKYKKLKEE 203
>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional.
Length = 381
Score = 32.0 bits (73), Expect = 0.57
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 345 PVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
P + +R +V K K +K K ++ +KK KK
Sbjct: 330 PAAKKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKA 366
>gnl|CDD|191968 pfam08213, DUF1713, Mitochondrial domain of unknown function
(DUF1713). This domain is found at the C terminal end
of mitochondrial proteins of unknown function.
Length = 34
Score = 28.1 bits (63), Expect = 0.59
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKK 380
+ +K+++K KK K KK +K+ +
Sbjct: 4 SVLRKRRRKMKKHKYKKLRKRTR 26
Score = 27.7 bits (62), Expect = 0.97
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 361 KKKKKKKKKKKKKKKKKKKKK 381
+K+++K KK K KK +K+ +
Sbjct: 6 LRKRRRKMKKHKYKKLRKRTR 26
Score = 26.9 bits (60), Expect = 1.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
A +K+++K KK K KK +K+
Sbjct: 1 QADSVLRKRRRKMKKHKYKKLRKR 24
Score = 26.5 bits (59), Expect = 2.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 354 SVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
SV ++K KK K KK +K+ + ++K
Sbjct: 4 SVLRKRRRKMKKHKYKKLRKRTRALRRK 31
>gnl|CDD|223898 COG0828, RpsU, Ribosomal protein S21 [Translation, ribosomal
structure and biogenesis].
Length = 67
Score = 29.2 bits (66), Expect = 0.64
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 351 RTHSVTLNAKKKKKKKKKKKKKKKKKKKKK 380
R + K+K+KK +K+K K+ +K++
Sbjct: 35 REFYEKPSEKRKRKKAAARKRKFKRLRKEQ 64
>gnl|CDD|221712 pfam12687, DUF3801, Protein of unknown function (DUF3801). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 158 and 187 amino
acids in length. This family includes the PcfB protein.
Length = 137
Score = 30.3 bits (69), Expect = 0.65
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKKK 380
L K+++ KKK++K K K KKK
Sbjct: 113 KLKKFKEEQAAKKKERKDKVKNKKK 137
Score = 29.1 bits (66), Expect = 1.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 362 KKKKKKKKKKKKKKKKKKKK 381
K+++ KKK++K K K KKK
Sbjct: 118 KEEQAAKKKERKDKVKNKKK 137
Score = 28.0 bits (63), Expect = 4.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
KK K+++ KKK++K K K KK
Sbjct: 115 KKFKEEQAAKKKERKDKVKNKK 136
>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 239
Score = 31.2 bits (71), Expect = 0.66
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
L +++ KK K KKKK K K K
Sbjct: 204 LELQRELMKKGKGKKKKIVKDKDGK 228
Score = 30.0 bits (68), Expect = 1.7
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 349 NVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
R KKKK K K K K KK++K
Sbjct: 206 LQRELMKKGKGKKKKIVKDKDGKVVYKWKKERK 238
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called The
RES complex, pre-mRNA retention and splicing complex.
Subunits of this complex are not essential for viability
of yeasts but they are required for efficient splicing
in vitro and in vivo. Furthermore, inactivation of this
complex causes pre-mRNA leakage from the nucleus. Bud13
contains a unique, phylogenetically conserved C-terminal
region of unknown function.
Length = 141
Score = 30.4 bits (69), Expect = 0.68
Identities = 7/24 (29%), Positives = 23/24 (95%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
+ ++K+++K+++K++K++K++K+K
Sbjct: 13 DIEEKREEKEREKEEKERKEEKEK 36
Score = 30.0 bits (68), Expect = 1.1
Identities = 7/26 (26%), Positives = 23/26 (88%)
Query: 355 VTLNAKKKKKKKKKKKKKKKKKKKKK 380
+ + K+++K+++K++K++K++K+K+
Sbjct: 12 IDIEEKREEKEREKEEKERKEEKEKE 37
Score = 29.6 bits (67), Expect = 1.4
Identities = 7/23 (30%), Positives = 22/23 (95%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
+K+++K+++K++K++K++K+K+
Sbjct: 15 EEKREEKEREKEEKERKEEKEKE 37
>gnl|CDD|219572 pfam07780, Spb1_C, Spb1 C-terminal domain. This presumed domain is
found at the C-terminus of a family of FtsJ-like
methyltransferases. Members of this family are involved
in 60S ribosomal biogenesis.
Length = 212
Score = 31.1 bits (71), Expect = 0.69
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Query: 359 AKKKKKKKKKK----KKKKKKKKKKKK 381
AKKKKKK+KK KK K K + K
Sbjct: 160 AKKKKKKRKKTYVVAKKGNKGKAGRPK 186
Score = 30.3 bits (69), Expect = 1.2
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 359 AKKKKKKKKKKKKK----KKKKKKKKKS 382
KK KKKKKK+KK KK K K
Sbjct: 157 YKKAKKKKKKRKKTYVVAKKGNKGKAGR 184
Score = 29.6 bits (67), Expect = 1.9
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 357 LNAKKKKKKKKKKKK----KKKKKKKKKK 381
L K KKKKKK+KK KK K K +
Sbjct: 156 LYKKAKKKKKKRKKTYVVAKKGNKGKAGR 184
>gnl|CDD|220654 pfam10254, Pacs-1, PACS-1 cytosolic sorting protein. PACS-1 is a
cytosolic sorting protein that directs the localisation
of membrane proteins in the trans-Golgi network
(TGN)/endosomal system. PACS-1 connects the clathrin
adaptor AP-1 to acidic cluster sorting motifs contained
in the cytoplasmic domain of cargo proteins such as
furin, the cation-independent mannose-6-phosphate
receptor and in viral proteins such as human
immunodeficiency virus type 1 Nef.
Length = 413
Score = 31.7 bits (72), Expect = 0.70
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 337 VSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
VS P S + T S+T+ K+K KK KK K+K+ +S
Sbjct: 309 VSRLPSSGQEAQMTNTMSMTVVTKEKNKKVPVMFLGKKPKEKEVES 354
>gnl|CDD|218899 pfam06102, DUF947, Domain of unknown function (DUF947). Family of
eukaryotic proteins with unknown function.
Length = 168
Score = 30.7 bits (70), Expect = 0.71
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K K+ K +KK+KK K+KK
Sbjct: 146 KKSKQLDKALEKKRKKNAGKEKK 168
Score = 29.9 bits (68), Expect = 1.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
KK + KK KKK + KK K+
Sbjct: 129 KKSEIKKLVLKKKFDELKKSKQ 150
Score = 29.2 bits (66), Expect = 2.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKKK 380
L K+ K +KK+KK K+KK
Sbjct: 144 ELKKSKQLDKALEKKRKKNAGKEKK 168
Score = 28.8 bits (65), Expect = 3.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
KK + KK K+ K +KK+KK
Sbjct: 140 KKFDELKKSKQLDKALEKKRKK 161
Score = 28.4 bits (64), Expect = 3.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 355 VTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
+ L K + KK K+ K +KK+KK +
Sbjct: 136 LVLKKKFDELKKSKQLDKALEKKRKKNA 163
>gnl|CDD|185507 PTZ00191, PTZ00191, 60S ribosomal protein L23a; Provisional.
Length = 145
Score = 30.4 bits (69), Expect = 0.74
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 354 SVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
+ AKKK KK K KK K KK+K
Sbjct: 2 APAKKAKKKAKKAAKAAKKGVKVKKRKV 29
Score = 29.3 bits (66), Expect = 1.6
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
KKK KK K KK K KK+K
Sbjct: 6 KAKKKAKKAAKAAKKGVKVKKRKV 29
Score = 28.1 bits (63), Expect = 4.2
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
KK KK K KK K KK+K +
Sbjct: 7 AKKKAKKAAKAAKKGVKVKKRKVR 30
Score = 27.7 bits (62), Expect = 6.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
K KK K KK K KK+K + S
Sbjct: 9 KKAKKAAKAAKKGVKVKKRKVRTS 32
>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible
proteins-interacting protein 1. Members of this family
of proteins act as negative regulators of G1 to S cell
cycle phase progression by inhibiting cyclin-dependent
kinases. Inhibitory effects are additive with GADD45
proteins but occur also in the absence of GADD45
proteins. Furthermore, they act as a repressor of the
orphan nuclear receptor NR4A1 by inhibiting AB
domain-mediated transcriptional activity.
Length = 217
Score = 30.9 bits (70), Expect = 0.78
Identities = 9/22 (40%), Positives = 19/22 (86%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKK 380
+K+K++KKK K+ K+++K++K
Sbjct: 185 QQKEKEEKKKVKEAKRREKEEK 206
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 30.9 bits (70), Expect = 0.78
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 355 VTLNAKKKKKKKKKKKKKKKKKKKKKK 381
+KKKK +KKK KK KKKKK+
Sbjct: 47 SKKTSKKKKTTPRKKKTTKKTKKKKKE 73
Score = 30.2 bits (68), Expect = 1.4
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
KK KKKK +KKK KK KK
Sbjct: 48 KKTSKKKKTTPRKKKTTKKTKKK 70
Score = 29.8 bits (67), Expect = 1.9
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K KKKK +KKK KK KKK
Sbjct: 49 KTSKKKKTTPRKKKTTKKTKKKK 71
Score = 29.8 bits (67), Expect = 1.9
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
KKK +KKK KK KKKKK+K
Sbjct: 53 KKKTTPRKKKTTKKTKKKKKEK 74
>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. The
spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and
U5) and proteins, catalyzes the excision of introns from
pre-mRNAs in two successive trans-esterification
reactions. Step 2 depends upon integral spliceosome
constituents such as U5 snRNA and Prp8 and
non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22.
ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a
conformational change in the spliceosome that leads to
protection of the 3'ss from targeted RNase H cleavage.
This change, which probably reflects binding of the 3'ss
PyAG in the catalytic centre of the spliceosome,
requires the ordered recruitment of Slu7, Prp18, and
Prp22 to the spliceosome. There is a close functional
relationship between Prp8, Prp18, and Slu7, and Prp18
interacts with Slu7, so that together they recruit Prp22
to the spliceosome. Most members of the family carry a
zinc-finger of the CCHC-type upstream of this domain.
Length = 236
Score = 30.9 bits (70), Expect = 0.85
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKK 379
T +KK+K+KK++ K +KK+
Sbjct: 156 TKLELLRKKEKEKKEQLKIQKKQS 179
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 31.1 bits (70), Expect = 0.87
Identities = 11/55 (20%), Positives = 23/55 (41%)
Query: 328 TSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
+ + + T++V+T + + K +K + KK+ KK KK+
Sbjct: 34 KTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAV 88
Score = 29.1 bits (65), Expect = 3.4
Identities = 17/57 (29%), Positives = 23/57 (40%)
Query: 326 QSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
++T E + T + T T+ + T AKK K KK K K KK K
Sbjct: 11 KTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKF 67
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 31.3 bits (71), Expect = 0.90
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 326 QSTSEGSAVVTVSDTPQSTPVTRNVRTHS---VTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
Q TS+ + + + + KKK K+KK+KK+ + K++S
Sbjct: 185 QDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEES 244
Score = 31.0 bits (70), Expect = 1.1
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 11/68 (16%)
Query: 326 QSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKK-----------KKKKK 374
S S V V ++ ++ T K K+ KKK
Sbjct: 167 PPKSIMSPEVKVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKT 226
Query: 375 KKKKKKKS 382
K+KK+KK
Sbjct: 227 KEKKEKKE 234
Score = 29.8 bits (67), Expect = 2.9
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 317 SSNIVSPVIQSTSEGSAVVTVSDT-PQSTPVTRNVRTHSVTLNAKKKKKKK---KKKKKK 372
+I+SP ++ S T +T + T +V+ S+ N KK KKK K
Sbjct: 168 PKSIMSPEVKVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTK 227
Query: 373 KKKKKKKKKS 382
+KK+KK+
Sbjct: 228 EKKEKKEASE 237
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 31.2 bits (70), Expect = 0.97
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 315 RTSSNIVSPVIQSTSEGSAVVT----VSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKK 370
R + V + + EGS +V D R R + + +++K +KK +
Sbjct: 79 RATKKTVVEISEPLEEGSELVVNEDAALDKESKKTPRRTRRKAAAASSDVEEEKTEKKVR 138
Query: 371 KKKKKKKKKKKS 382
K++K KK +
Sbjct: 139 KRRKVKKMDEDV 150
>gnl|CDD|218550 pfam05311, Baculo_PP31, Baculovirus 33KDa late protein (PP31).
Autographa californica nuclear polyhedrosis virus
(AcMNPV) pp31 is a nuclear phosphoprotein that
accumulates in the virogenic stroma, which is the viral
replication centre in the infected-cell nucleus, binds
to DNA, and serves as a late expression factor.
Length = 267
Score = 30.8 bits (70), Expect = 0.99
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 319 NIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKK 378
NI+ + + ++ +V TPQS+ +R K+K KK KK KK+K
Sbjct: 196 NILLKLNDNDKTAASSASVVPTPQSSSPSR-----------KRKAPKKVAKKVAAAKKRK 244
Query: 379 KKKS 382
+K+S
Sbjct: 245 QKRS 248
>gnl|CDD|206228 pfam14058, PcfK, PcfK-like protein. The PcfK-like protein family
includes the Enterococcus faecalis PcfK protein, which
is functionally uncharacterized. This family of proteins
is found in bacteria and viruses. Proteins in this
family are typically between 137 and 257 amino acids in
length. There are two completely conserved residues (D
and L) that may be functionally important.
Length = 136
Score = 29.7 bits (67), Expect = 1.1
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 335 VTVSDTPQSTP-VTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
VTV+ T + T R A K ++++ +K +K+ KK KK
Sbjct: 82 VTVNHTVELTEEEKAEARKE-----ALKAYQQEELRKIQKRSKKSKKAE 125
>gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564. This
family of proteins has no known function. However, one
of the members is annotated as an EF-hand family
protein.
Length = 349
Score = 30.9 bits (70), Expect = 1.1
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 336 TVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
T P ST ++ T +K+ K++++KK+ +++KKKKK+
Sbjct: 260 TRRKLPPSTKKWESLVKFLRTERKEKEAKEQQEKKELEQRKKKKKEM 306
>gnl|CDD|240377 PTZ00352, PTZ00352, 60S ribosomal protein L13; Provisional.
Length = 212
Score = 30.5 bits (69), Expect = 1.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKKKK 381
TL K K KK+KKK+ K+KKK
Sbjct: 187 TLRQAKLNAKFVGKKEKKKQAKEKKK 212
>gnl|CDD|220207 pfam09368, Sas10_Utp3_C, Sas10 C-terminal domain. This family
contains a C-terminal presumed domain in Sas10 which
hash been identified as a regulator of chromatin
silencing.
Length = 76
Score = 28.8 bits (65), Expect = 1.1
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 359 AKKKKKK----KKKKKKKKKKKKKKKKS 382
+K+KK + KK+KK +K K+ KS
Sbjct: 20 TRKRKKDRRNPRVKKRKKYEKAVKRLKS 47
Score = 27.6 bits (62), Expect = 2.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 358 NAKKKKKKKKKKKKKKKK 375
N + KK+KK +K K+ K
Sbjct: 29 NPRVKKRKKYEKAVKRLK 46
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 30.7 bits (70), Expect = 1.1
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 355 VTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
V + +KKK++KK+++K+ K+
Sbjct: 172 VGVPGHSSDSEKKKQRKKQRRKRSKELR 199
>gnl|CDD|225816 COG3277, GAR1, RNA-binding protein involved in rRNA processing
[Translation, ribosomal structure and biogenesis].
Length = 98
Score = 28.9 bits (65), Expect = 1.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKK 380
+ K +KK+K +KK++ KK K
Sbjct: 75 IPPDKLIRKKRKLPRKKRRPKKPK 98
Score = 27.7 bits (62), Expect = 3.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 361 KKKKKKKKKKKKKKKKKKKKK 381
K +KK+K +KK++ KK K
Sbjct: 78 DKLIRKKRKLPRKKRRPKKPK 98
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 30.4 bits (69), Expect = 1.4
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 341 PQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
P+ + R KK++ + ++KKK+KK K +++
Sbjct: 358 PKPPTKAKPER-------DKKERPGRYRRKKKEKKAKSERRG 392
Score = 29.3 bits (66), Expect = 3.2
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 340 TPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
P R+ + + ++KKK+KK K +++ +
Sbjct: 360 PPTKAKPERDKK------ERPGRYRRKKKEKKAKSERRGLQN 395
Score = 29.3 bits (66), Expect = 3.6
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
++ + ++KKK+KK K +++
Sbjct: 372 ERPGRYRRKKKEKKAKSERRGLQ 394
Score = 28.9 bits (65), Expect = 4.6
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKKKK 381
K K K ++ KK++ + ++K
Sbjct: 355 EKPPKPPTKAKPERDKKERPGRYRRK 380
Score = 28.5 bits (64), Expect = 5.5
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
+ + ++KKK+KK K +++ ++
Sbjct: 373 RPGRYRRKKKEKKAKSERRGLQN 395
Score = 28.5 bits (64), Expect = 6.5
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 340 TPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKK 380
P T+ + ++KKK+KK K +++ +
Sbjct: 355 EKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
>gnl|CDD|222466 pfam13945, NST1, Splicing factor, salt tolerance regulator. NST1
is a family of proteins that seem to be involved,
directly or indirectly, in the salt sensitivity of some
cellular functions in yeast. These proteins also
interact with the splicing factor Msl1p.
Length = 189
Score = 29.9 bits (67), Expect = 1.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 342 QSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKK 373
Q N H+ + ++K KKKKKK+ K
Sbjct: 14 QQNTDELNTVIHNDSSSSKSKKKKKKRSKATS 45
Score = 29.5 bits (66), Expect = 2.0
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 352 THSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
T + K KKKKKK+ K S
Sbjct: 17 TDELNTVIHNDSSSSKSKKKKKKRSKATSPS 47
Score = 29.5 bits (66), Expect = 2.4
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 348 RNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
+ + ++ LN K KKKKKK+ K S
Sbjct: 11 PHSQQNTDELNTVIHNDSSSSKSKKKKKKRSKATS 45
Score = 29.5 bits (66), Expect = 2.4
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 346 VTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKK 377
++V N K KKKKKK+ K
Sbjct: 14 QQNTDELNTVIHNDSSSSKSKKKKKKRSKATS 45
Score = 29.1 bits (65), Expect = 2.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 341 PQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKK 375
P S T + T ++ K KKKKKK+ K
Sbjct: 11 PHSQQNTDELNTVIHNDSSSSKSKKKKKKRSKATS 45
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 30.4 bits (69), Expect = 1.6
Identities = 16/24 (66%), Positives = 16/24 (66%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
N K KKKKKKKKK KK K KK
Sbjct: 251 NPSKVKKKKKKKKKVVHKKYKTKK 274
Score = 29.7 bits (67), Expect = 2.6
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
+K KKKKKKKKK KK K KK +
Sbjct: 253 SKVKKKKKKKKKVVHKKYKTKKLT 276
Score = 29.3 bits (66), Expect = 3.2
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 354 SVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
+ L K++K + K KK +++++ +KK
Sbjct: 272 TKKLTGKQRKARVKAKKAQRRERLQKKIK 300
>gnl|CDD|224208 COG1289, COG1289, Predicted membrane protein [Function unknown].
Length = 674
Score = 30.5 bits (69), Expect = 1.6
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 7/85 (8%)
Query: 158 VLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWI 217
V L+ W+ +++ + + FV+ Y ALI I
Sbjct: 76 VALLAQEPWLFLLLLTLWLGLCTAIGS------LYRTIASYAFVLAGYTALIIGPAP-AI 128
Query: 218 PGFVMVTMLVVNTVLLMLSNVWILP 242
P ++ V V+ +L + P
Sbjct: 129 PEPELLFDGAVWRVVEILLGILCAP 153
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 30.4 bits (69), Expect = 1.7
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKKKK 381
N K + K+KKK+KKK++KKKK+
Sbjct: 319 RDNEKLDAEVKEKKKEKKKEEKKKKQ 344
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 30.4 bits (69), Expect = 1.7
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
+K+ K++K+ +K KK+++KKK
Sbjct: 557 KEEKEALKEQKRLRKLKKQEEKKK 580
Score = 29.6 bits (67), Expect = 3.1
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 335 VTVSDTPQSTPVTR--NVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
+ + D P V + + K+ K++K+ +K KK+++KKKK
Sbjct: 533 IRIEDKPDGPSVWKLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKK 581
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 29.3 bits (66), Expect = 1.9
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 338 SDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
SD + + + K + K+KKK++ K K +K+
Sbjct: 94 SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEK 138
>gnl|CDD|223058 PHA03366, PHA03366, FGAM-synthase; Provisional.
Length = 1304
Score = 30.4 bits (69), Expect = 2.0
Identities = 23/118 (19%), Positives = 36/118 (30%), Gaps = 21/118 (17%)
Query: 72 LRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFM-CDVWNSFDVYFSTASI- 129
L + N + L + + + + + T +Y C S + S+
Sbjct: 195 LDKVCNGVMGDLPLGGDALPVAIQASSPLPGYTVAYYLSLTPTCTSVRSNYLTRGAHSVE 254
Query: 130 ---LHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTT 184
LH +Q Q T LL + +LPG LGWY T
Sbjct: 255 TGFLHTHG-----------SIQTMG--PQLTGLLFQPS--LLPGG-LPRASALGWYVT 296
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
Length = 1094
Score = 30.2 bits (68), Expect = 2.2
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 362 KKKKKKKKKKKKKKKKKKKKS 382
+KKKKKKK K+KKKKK ++ S
Sbjct: 684 RKKKKKKKSKEKKKKKNREAS 704
Score = 30.2 bits (68), Expect = 2.3
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
++KKKKKKK K+KKKKK ++ K
Sbjct: 683 SRKKKKKKKSKEKKKKKNREASK 705
Score = 29.5 bits (66), Expect = 3.7
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
KKKKKKK K+KKKKK ++ K+
Sbjct: 685 KKKKKKKSKEKKKKKNREASKQ 706
>gnl|CDD|227238 COG4901, COG4901, Ribosomal protein S25 [Translation, ribosomal
structure and biogenesis].
Length = 107
Score = 28.3 bits (63), Expect = 2.2
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K +K K K KKK KKKKK
Sbjct: 11 KKAEKAKAGTAKDKKKWSKKKKK 33
Score = 28.0 bits (62), Expect = 3.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
K K K KKK KKKKK++
Sbjct: 14 EKAKAGTAKDKKKWSKKKKKEEAR 37
Score = 28.0 bits (62), Expect = 3.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
+K+KK +K K K KKK KK
Sbjct: 8 SKEKKAEKAKAGTAKDKKKWSKKK 31
Score = 27.6 bits (61), Expect = 4.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 352 THSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
S A+K K K KKK KKKKK++
Sbjct: 6 QLSKEKKAEKAKAGTAKDKKKWSKKKKKEE 35
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 29.8 bits (67), Expect = 2.3
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
++ K++ +KK+K KKK +K+K
Sbjct: 347 DEESKEEVEKKQKVKKKPRKRK 368
Score = 29.0 bits (65), Expect = 4.8
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
+ ++ K++ +KK+K KKK +K+
Sbjct: 344 DEDDEESKEEVEKKQKVKKKPRKR 367
>gnl|CDD|240256 PTZ00071, PTZ00071, 40S ribosomal protein S24; Provisional.
Length = 132
Score = 28.8 bits (65), Expect = 2.3
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKKKKS 382
+K +K+ K ++KK + K+K K S
Sbjct: 102 KKAGRKARKELKNRRKKVRGKEKTKVS 128
>gnl|CDD|218337 pfam04939, RRS1, Ribosome biogenesis regulatory protein (RRS1).
This family consists of several eukaryotic ribosome
biogenesis regulatory (RRS1) proteins. RRS1 is a nuclear
protein that is essential for the maturation of 25 S
rRNA and the 60 S ribosomal subunit assembly in
Saccharomyces cerevisiae.
Length = 164
Score = 29.2 bits (66), Expect = 2.3
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
AKK+++KK++ K +K++ K KK
Sbjct: 142 AKKRREKKERVAKNEKRELKNKK 164
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 29.3 bits (66), Expect = 2.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K+ +K KK KKK K+K
Sbjct: 54 KRPTTPRKPATTKKSKKKDKEKL 76
Score = 29.0 bits (65), Expect = 3.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
KKK+ +K KK KKK K
Sbjct: 52 KKKRPTTPRKPATTKKSKKKDK 73
Score = 29.0 bits (65), Expect = 3.2
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 318 SNIVSPVIQSTSEGSAVVTVSDTPQSTPVTR-------NVRTHSVTLNAKKKKKKKKKKK 370
NI+ + + + SAV TV + Q+ ++R + KK+ +KK
Sbjct: 134 ENIIKDLKKLNARVSAVSTVLEDVQAASISRQFTSLGKAIEELKHLAECGKKQVTRKKVA 193
Query: 371 KKKKK 375
KK
Sbjct: 194 ATTKK 198
>gnl|CDD|220633 pfam10214, Rrn6, RNA polymerase I-specific transcription-initiation
factor. RNA polymerase I-specific
transcription-initiation factor Rrn6 and Rrn7 represent
components of a multisubunit transcription factor
essential for the initiation of rDNA transcription by
Pol I. These proteins are found in fungi.
Length = 753
Score = 30.1 bits (68), Expect = 2.4
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 301 RIYKEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTP----------QSTPVTRNV 350
R ++ + R S + +P + +S+ + SD P +++
Sbjct: 672 RSSQQVSQTRKGGSSVVPSAPAPRLAQSSQPPTSQSSSDLPPSSSQAFSLSDLPMQSQSE 731
Query: 351 RTHSVTLNAKKKKKKKKKK 369
S +A KKKKKKK+K
Sbjct: 732 SGLSGGRSASKKKKKKKRK 750
>gnl|CDD|202819 pfam03939, Ribosomal_L23eN, Ribosomal protein L23, N-terminal
domain. The N-terminal domain appears to be specific to
the eukaryotic ribosomal proteins L25, L23, and L23a.
Length = 52
Score = 26.9 bits (60), Expect = 2.5
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
K K K KK K KKK+K
Sbjct: 1 PKAKALKAKKAVLKGVHGKKKRKI 24
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional.
Length = 256
Score = 29.6 bits (67), Expect = 2.6
Identities = 9/74 (12%), Positives = 21/74 (28%)
Query: 309 QRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKK 368
Q + R++ I Q + TP + + +
Sbjct: 110 QTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQA 169
Query: 369 KKKKKKKKKKKKKS 382
+ K + +K+K+
Sbjct: 170 VEAPKVEAEKEKEQ 183
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 29.8 bits (68), Expect = 2.7
Identities = 7/32 (21%), Positives = 23/32 (71%)
Query: 350 VRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
V++HS T+ ++ +K++ K++ +++ K + ++
Sbjct: 31 VKSHSSTVEEEEARKEEAKREAEEEAKAEAEE 62
>gnl|CDD|197876 smart00792, Agouti, Agouti protein. The agouti protein regulates
pigmentation in the mouse hair follicle producing a
black hair with a subapical yellow band. A highly
homologous protein agouti signal protein (ASIP) is
present in humans and is expressed at highest levels in
adipose tissue where it may play a role in energy
homeostasis and possibly human pigmentation.
Length = 124
Score = 28.3 bits (63), Expect = 2.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 355 VTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
V LN K KK ++ +KK +KK+KK
Sbjct: 48 VGLNKKPKKISAEEAEKKLLQKKEKKAL 75
>gnl|CDD|221012 pfam11169, DUF2956, Protein of unknown function (DUF2956). This
family of proteins with unknown function appears to be
restricted to Gammaproteobacteria.
Length = 103
Score = 28.0 bits (63), Expect = 2.8
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
KK++K K ++ K +K++ K K
Sbjct: 40 KKQQKAKAREADKARKQQLKAKQ 62
>gnl|CDD|149438 pfam08374, Protocadherin, Protocadherin. The structure of
protocadherins is similar to that of classic cadherins
(pfam00028), but particularly on the cytoplasmic domains
they also have some unique features. They are expressed
in a variety of organisms and are found in high
concentrations in the brain where they seem to be
localised mainly at cell-cell contact sites. Their
expression seems to be developmentally regulated.
Length = 223
Score = 29.0 bits (65), Expect = 3.1
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 363 KKKKKKKKKKKKKKKKKKKS 382
++ K+KKKKK KKKK KS
Sbjct: 86 NQENKQKKKKKDKKKKSPKS 105
Score = 28.7 bits (64), Expect = 4.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 355 VTLNAKKKKKKKKKKKKKKKKK 376
+ N + K+KKKKK KKKK K
Sbjct: 83 FSPNQENKQKKKKKDKKKKSPK 104
Score = 28.3 bits (63), Expect = 6.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 359 AKKKKKKKKKKKKKKKKKKKK 379
+ ++ K+KKKKK KKKK K
Sbjct: 84 SPNQENKQKKKKKDKKKKSPK 104
Score = 27.9 bits (62), Expect = 8.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 362 KKKKKKKKKKKKKKKKKKK 380
++ K+KKKKK KKKK K
Sbjct: 86 NQENKQKKKKKDKKKKSPK 104
>gnl|CDD|218797 pfam05890, Ebp2, Eukaryotic rRNA processing protein EBP2. This
family consists of several Eukaryotic rRNA processing
protein EBP2 sequences. Ebp2p is required for the
maturation of 25S rRNA and 60S subunit assembly. Ebp2p
may be one of the target proteins of Rrs1p for executing
the signal to regulate ribosome biogenesis. This family
also plays a role in chromosome segregation.
Length = 270
Score = 29.2 bits (66), Expect = 3.1
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
+KKK +K + K K+K K +
Sbjct: 197 GSKKKGRKGGAARGKPNAKRKAKDA 221
>gnl|CDD|223939 COG1007, NuoN, NADH:ubiquinone oxidoreductase subunit 2 (chain N)
[Energy production and conversion].
Length = 475
Score = 29.5 bits (67), Expect = 3.4
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 10/99 (10%)
Query: 52 IITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGY 111
II AI +L+++ + + + LA LL AL + F A + G
Sbjct: 12 IILAITALVLLLVGLF-----IRRSRSLLAYLAVLGLLAALASLLFIAYRGS---AFAGA 63
Query: 112 FMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYP 150
F+ D + L +S Y
Sbjct: 64 FIVDALALLMKIVVLLASLAALILS--LPYLERAGTFKG 100
>gnl|CDD|223126 COG0048, RpsL, Ribosomal protein S12 [Translation, ribosomal
structure and biogenesis].
Length = 129
Score = 28.4 bits (64), Expect = 3.4
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
A+K + +KK++ K KS
Sbjct: 4 ARKMPTINQLVRKKRRSLGLKSKS 27
>gnl|CDD|222716 pfam14374, Ribos_L4_asso_C, 60S ribosomal protein L4 C-terminal
domain. This family is found at the very C-terminal of
60 ribosomal L4 proteins.
Length = 80
Score = 27.2 bits (61), Expect = 3.5
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 357 LN--AKKKKKKKKKKKKKKKKKKKKK 380
LN AK ++ +KK+KK K +K
Sbjct: 55 LNPYAKVARRAALLAEKKRKKAKAEK 80
>gnl|CDD|176075 cd08693, C2_PI3K_class_I_beta_delta, C2 domain present in class I
beta and delta phosphatidylinositol 3-kinases (PI3Ks).
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases)
regulate cell processes such as cell growth,
differentiation, proliferation, and motility. PI3Ks
work on phosphorylation of phosphatidylinositol,
phosphatidylinositide (4)P (PtdIns (4)P),2 or
PtdIns(4,5)P2. Specifically they phosphorylate the D3
hydroxyl group of phosphoinositol lipids on the inositol
ring. There are 3 classes of PI3Ks based on structure,
regulation, and specificity. All classes contain a C2
domain, a PIK domain, and a kinase catalytic domain.
The members here are class I, beta and delta isoforms of
PI3Ks and contain both a Ras-binding domain and a
p85-binding domain. Class II PI3Ks contain both of
these as well as a PX domain, and a C-terminal C2 domain
containing a nuclear localization signal. C2 domains
fold into an 8-standed beta-sandwich that can adopt 2
structural arrangements: Type I and Type II,
distinguished by a circular permutation involving their
N- and C-terminal beta strands. Many C2 domains are
Ca2+-dependent membrane-targeting modules that bind a
wide variety of substances including bind phospholipids,
inositol polyphosphates, and intracellular proteins.
Most C2 domain proteins are either signal transduction
enzymes that contain a single C2 domain, such as protein
kinase C, or membrane trafficking proteins which contain
at least two C2 domains, such as synaptotagmin 1.
However, there are a few exceptions to this including
RIM isoforms and some splice variants of piccolo/aczonin
and intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. Members have a type-I
topology.
Length = 173
Score = 28.8 bits (65), Expect = 3.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKK 380
KK K K+ +K + KKKKKK
Sbjct: 84 EVSKKAKGKRSRKNQTKKKKKK 105
Score = 28.4 bits (64), Expect = 4.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 361 KKKKKKKKKKKKKKKKKKKKKS 382
KK K K+ +K + KKKKKK
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKKD 106
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 29.4 bits (66), Expect = 3.5
Identities = 8/22 (36%), Positives = 18/22 (81%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
+KK+K++ + K+K++K ++KK
Sbjct: 413 EKKQKEQADEDKEKRQKDERKK 434
Score = 29.4 bits (66), Expect = 3.8
Identities = 7/22 (31%), Positives = 17/22 (77%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
+KK+K++ + K+K++K ++K
Sbjct: 412 NEKKQKEQADEDKEKRQKDERK 433
Score = 29.4 bits (66), Expect = 4.0
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKK 380
N KK+K++ + K+K++K ++KK
Sbjct: 412 NEKKQKEQADEDKEKRQKDERKK 434
Score = 27.8 bits (62), Expect = 9.8
Identities = 7/25 (28%), Positives = 18/25 (72%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
L ++ +KK+K++ + K+K++K +
Sbjct: 407 LKQEENEKKQKEQADEDKEKRQKDE 431
>gnl|CDD|235615 PRK05812, secD, preprotein translocase subunit SecD; Reviewed.
Length = 462
Score = 29.4 bits (67), Expect = 3.7
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 15/53 (28%)
Query: 197 VCIFVVNVYYALISSSISFWIPGFVMVTMLVVNTVLLMLSNVWI-----LPGI 244
V +F++ +YY L G + LV N VL++ + LPGI
Sbjct: 310 VLLFMI-LYYRL---------FGLIANIALVANLVLILAVLSLLGATLTLPGI 352
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 29.3 bits (66), Expect = 3.8
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
N + + K++K++ K+K KKK KKS
Sbjct: 5 NGENEVKQQKQQNKQKGTKKKNKKS 29
Score = 28.9 bits (65), Expect = 4.4
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
+ K+ KKKKKKKKKKKKK
Sbjct: 48 QEAENKQNNKKKKKKKKKKKKKNL 71
Score = 28.1 bits (63), Expect = 8.7
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKK 379
K+ KKKKKKKKKKKKK
Sbjct: 49 EAENKQNNKKKKKKKKKKKKKNLG 72
>gnl|CDD|238420 cd00823, TopoIIB_Trans, TopoIIB_Trans: Transducer domain, having a
ribosomal S5 domain 2-like fold, of the type found in
proteins of the type IIB family of DNA topoisomerases
similar to Sulfolobus shibatae topoisomerase VI
(topoVI). The sole representative of the Type IIB family
is topo VI. Topo VI enzymes are heterotetramers found in
archaea and plants. S. shibatae topoVI relaxes both
positive and negative supercoils, and in addition has a
strong decatenase activity. This transducer domain is
homologous to the second domain of the DNA gyrase B
subunit, which is known to be important in nucleotide
hydrolysis and the transduction of structural signals
from ATP-binding site to the DNA breakage/reunion
regions of the enzymes.
Length = 151
Score = 28.4 bits (64), Expect = 4.0
Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 319 NIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKK 378
++ S + TSEG ++D P+ + ++ ++ A+K K+ KK+K+++ ++K
Sbjct: 98 HVASTKVPFTSEGKE--AIADIPE---IEEEIK-LALQEVARKLKRYLSKKRKERELQQK 151
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 28.6 bits (64), Expect = 4.0
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKKKK 381
T + K K KK KK KKKKKKK+
Sbjct: 192 TWHYKGDKSSAKKDKKSKKKKKKKRS 217
Score = 28.6 bits (64), Expect = 4.9
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 361 KKKKKKKKKKKKKKKKKKKKKS 382
K K KK KK KKKKKKK+S
Sbjct: 196 KGDKSSAKKDKKSKKKKKKKRS 217
>gnl|CDD|217754 pfam03836, RasGAP_C, RasGAP C-terminus.
Length = 139
Score = 28.4 bits (64), Expect = 4.0
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 356 TLNAKKKKKKKK---KKKKKKKKKKKKKKS 382
TL KKK K+K KK +KK KK K S
Sbjct: 87 TLQKKKKFSKQKFSVKKLQKKHGKKPKFGS 116
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 28.9 bits (65), Expect = 4.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 343 STPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKK 376
+P R +++ K++ KK+KKKK KK K
Sbjct: 341 HSPPAAFERPLALSPKRKREGDKKQKKKKSKKLK 374
Score = 28.1 bits (63), Expect = 7.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 363 KKKKKKKKKKKKKKKKKKKS 382
K+K++ KK+KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLKL 375
Score = 28.1 bits (63), Expect = 8.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKK 380
L K+K++ KK+KKKK KK K
Sbjct: 351 LALSPKRKREGDKKQKKKKSKKLK 374
>gnl|CDD|220267 pfam09494, Slx4, Slx4 endonuclease. The Slx4 protein is a
heteromeric structure-specific endonuclease found in
fungi. Slx4 with Slx1 acts as a nuclease on branched DNA
substrates, particularly simple-Y, 5'-flap, or
replication fork structures by cleaving the strand
bearing the 5' non-homologous arm at the branch junction
and thus generating ligatable nicked products from
5'-flap or replication fork substrates.
Length = 627
Score = 29.2 bits (65), Expect = 4.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 349 NVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
+ +V+ KKKK KK K +K+ K+K KK
Sbjct: 60 QANSGNVSGKRVPKKKKIKKPKLRKRTKRKNKKI 93
>gnl|CDD|234533 TIGR04285, nucleoid_noc, nucleoid occlusion protein. This model
describes nucleoid occlusion protein, a close homolog to
ParB chromosome partitioning proteins including Spo0J in
Bacillus subtilis. Its gene often is located near the
gene for the Spo0J ortholog. This protein bind a
specific DNA sequence and blocks cytokinesis from
happening until chromosome segregation is complete.
Length = 255
Score = 28.6 bits (65), Expect = 4.4
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 5/29 (17%)
Query: 357 LNAKK-----KKKKKKKKKKKKKKKKKKK 380
LN K+ KK +K +K KKKKK++K
Sbjct: 182 LNVKQTEELIKKLLEKPEKPKKKKKRRKG 210
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 29.0 bits (65), Expect = 4.5
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 337 VSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
D+ ++ S+ K K +K KKK K KKKK
Sbjct: 96 FFDSKNNSKQFAGPLAISLMRKPKPKTEKLKKKITVNKSTNKKKK 140
Score = 29.0 bits (65), Expect = 4.5
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 340 TPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
S + + K +K KKK K KKKKK
Sbjct: 100 KNNSKQFAGPLAISLMRKPKPKTEKLKKKITVNKSTNKKKKK 141
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 29.1 bits (65), Expect = 4.9
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKK 380
L KKKK++K K+K+ KK K +K
Sbjct: 18 LERKKKKEEKAKEKELKKLKAAQK 41
Score = 29.1 bits (65), Expect = 5.4
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
+KKKK++K K+K+ KK K +K
Sbjct: 20 RKKKKEEKAKEKELKKLKAAQK 41
>gnl|CDD|238028 cd00073, H15, linker histone 1 and histone 5 domains; the basic
subunit of chromatin is the nucleosome, consisting of an
octamer of core histones, two full turns of DNA, a
linker histone (H1 or H5) and a variable length of
linker DNA; H1/H5 are chromatin-associated proteins that
bind to the exterior of nucleosomes and dramatically
stabilize the highly condensed states of chromatin
fibers; stabilization of higher order folding occurs
through electrostatic neutralization of the linker DNA
segments, through a highly positively charged carboxy-
terminal domain known as the AKP helix (Ala, Lys, Pro);
thought to be involved in specific protein-protein and
protein-DNA interactions and play a role in suppressing
core histone tail domain acetylation in the chromatin
fiber.
Length = 88
Score = 27.2 bits (61), Expect = 5.0
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 354 SVTLNAKKKKKKKKKKK 370
S L+ KKKKKKK KK
Sbjct: 72 SFKLSKKKKKKKKPAKK 88
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 29.0 bits (66), Expect = 5.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
+K +K KKKKKKK K K K ++
Sbjct: 680 EKIQKPKKKKKKKPKTVKPKPRT 702
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 29.2 bits (66), Expect = 5.2
Identities = 15/56 (26%), Positives = 21/56 (37%)
Query: 326 QSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
+ SAV P P + + KKK KK+ + KKKKK +
Sbjct: 1273 NAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSE 1328
Score = 28.5 bits (64), Expect = 8.6
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
A K +K K KKK+KKKKK KS
Sbjct: 1166 ASKLRKPKLKKKEKKKKKSSADKS 1189
Score = 28.5 bits (64), Expect = 8.8
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 352 THSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
+ K K K +K K KKK+KKKKK S
Sbjct: 1155 EQRLKSKTKGKASKLRKPKLKKKEKKKKKSS 1185
Score = 28.1 bits (63), Expect = 9.6
Identities = 21/71 (29%), Positives = 27/71 (38%)
Query: 312 ALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKK 371
A R S+ SP S S T R KKKKK +KK +
Sbjct: 1274 APKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTAR 1333
Query: 372 KKKKKKKKKKS 382
KKK K + K++
Sbjct: 1334 KKKSKTRVKQA 1344
>gnl|CDD|240292 PTZ00148, PTZ00148, 40S ribosomal protein S8; Provisional.
Length = 205
Score = 28.4 bits (64), Expect = 5.3
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 333 AVVTVSDTPQSTPVTRNVRTH-SVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
A+V + + P + H + L KKK KK+++ KK KKK +
Sbjct: 100 AIVQID----AAPFKQWYAKHYGIDLGKKKKYKKEEENKKAKKKSESLVA 145
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 27.9 bits (63), Expect = 5.5
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K+KKKKKKKKK+ + ++KKKK
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKK 103
Score = 27.5 bits (62), Expect = 7.2
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
+KKKKKKKKK+ + ++KKKK
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYV 105
>gnl|CDD|233160 TIGR00869, sec62, protein translocation protein, Sec62 family.
Members of the NSCC2 family have been sequenced from
various yeast, fungal and animals species including
Saccharomyces cerevisiae, Drosophila melanogaster and
Homo sapiens. These proteins are the Sec62 proteins,
believed to be associated with the Sec61 and Sec63
constituents of the general protein secretary systems of
yeast microsomes. They are also the non-selective cation
(NS) channels of the mammalian cytoplasmic membrane. The
yeast Sec62 protein has been shown to be essential for
cell growth. The mammalian NS channel proteins has been
implicated in platelet derived growth factor(PGDF)
dependent single channel current in fibroblasts. These
channels are essentially closed in serum deprived
tissue-culture cells and are specifically opened by
exposure to PDGF. These channels are reported to exhibit
equal selectivity for Na+, K+ and Cs+ with low
permeability to Ca2+, and no permeability to anions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 232
Score = 28.3 bits (63), Expect = 5.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
K KKK K KK KKK+ K+++
Sbjct: 207 EKDKYSYKKKLKSKKLKKKQAKREA 231
>gnl|CDD|201461 pfam00829, Ribosomal_L21p, Ribosomal prokaryotic L21 protein.
Length = 96
Score = 27.1 bits (61), Expect = 5.8
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 344 TPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKK 380
P + + L + KK K K++K +KK+
Sbjct: 51 KPYVEGAKVKAEVLEHGRGKKVIVFKYKRRKNYRKKQ 87
>gnl|CDD|179392 PRK02249, PRK02249, DNA primase large subunit; Validated.
Length = 343
Score = 28.4 bits (64), Expect = 6.0
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 278 YYALISSSISFWIPGFVMVTM--YYRIYKEAVRQRIA 312
+ L++ + + G+V VT + R+ +EA+R+RI
Sbjct: 146 KWRLVNRPV---VKGYVYVTREEFARLLREAIRERIL 179
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 28.0 bits (63), Expect = 6.2
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
+K+KKK K++KK K++K+K
Sbjct: 96 EEKEKKKAMSKEEKKAIKEEKEK 118
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 28.7 bits (64), Expect = 6.2
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
+ KK ++ KK KK KK+
Sbjct: 1191 SGAAKKVSRQAPKKPAPKKTTKKA 1214
Score = 28.3 bits (63), Expect = 8.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
AKK ++ KK KK KK +S
Sbjct: 1194 AKKVSRQAPKKPAPKKTTKKASES 1217
>gnl|CDD|226159 COG3633, SstT, Na+/serine symporter [Amino acid transport and
metabolism].
Length = 407
Score = 28.5 bits (64), Expect = 6.4
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 38 IFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSL-AFADLLVALCVM 95
+F + +G L+ I+I +LG LL IIS + ++ FV +L A A +LV + VM
Sbjct: 7 LFRLLARGSLVKQILIGLVLGILLAIISPPAAEAVGLLGTLFVGALKAVAPVLVFILVM 65
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic. This model
describes the eukaryotic 60S (cytosolic) ribosomal
protein L7 and paralogs that may or may not also be L7.
Human, Drosophila, and Arabidopsis all have both a
typical L7 and an L7-related paralog. This family is
designated subfamily rather than equivalog to reflect
these uncharacterized paralogs. Members of this family
average ~ 250 residues in length, somewhat longer than
the archaeal L30P/L7E homolog (~ 155 residues) and much
longer than the related bacterial/organellar form (~ 60
residues).
Length = 235
Score = 28.1 bits (63), Expect = 6.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 348 RNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKK 379
R R AK+ K KKK KKK+K K+
Sbjct: 7 RKARQELAVQVAKQAKAKKKANKKKRKIYFKR 38
>gnl|CDD|217479 pfam03297, Ribosomal_S25, S25 ribosomal protein.
Length = 105
Score = 27.0 bits (60), Expect = 6.6
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K++KK K K KKKK
Sbjct: 5 KQQKKAAKAAAASAGGKAKKKK 26
Score = 27.0 bits (60), Expect = 6.9
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
KK++KK K K KKK
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKK 25
>gnl|CDD|214659 smart00433, TOP2c, TopoisomeraseII. Eukaryotic DNA topoisomerase
II, GyrB, ParE.
Length = 594
Score = 28.7 bits (65), Expect = 6.6
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 354 SVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
V L AK + KK ++ +KKK
Sbjct: 339 KVLLAAKARAAAKKARELTRKKKLSSISL 367
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 28.9 bits (65), Expect = 6.7
Identities = 12/22 (54%), Positives = 19/22 (86%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K KKKKKK+KKK+++ K+++K
Sbjct: 744 KTKKKKKKEKKKEEEYKREEKA 765
Score = 28.9 bits (65), Expect = 6.7
Identities = 12/23 (52%), Positives = 20/23 (86%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
+K KKKKKK+KKK+++ K+++K
Sbjct: 742 EEKTKKKKKKEKKKEEEYKREEK 764
>gnl|CDD|219784 pfam08302, tRNA_lig_CPD, Fungal tRNA ligase phosphodiesterase
domain. This domain is found in fungal tRNA ligases and
has cyclic phosphodiesterase activity. tRNA ligases are
enzymes required for the splicing of precursor tRNA
molecules containing introns.
Length = 259
Score = 28.1 bits (63), Expect = 6.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 352 THSVTLNAKKKKKKKKKKKKKKKKKKKK 379
T + +K K K+K + +KKKKK
Sbjct: 45 TKIIGYGSKNNKNKQKGETPSPEKKKKK 72
>gnl|CDD|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional.
Length = 393
Score = 28.4 bits (64), Expect = 6.9
Identities = 13/24 (54%), Positives = 13/24 (54%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKK 380
A KK KK K K KKKKKK
Sbjct: 346 FTATKKPIKKSNSKAKLKKKKKKA 369
>gnl|CDD|220129 pfam09159, Ydc2-catalyt, Mitochondrial resolvase Ydc2 / RNA
splicing MRS1. Members of this family adopt a secondary
structure consisting of two beta sheets and one alpha
helix, arranged as a beta-alpha-beta motif. Each beta
sheet has five strands, arranged in a 32145 order, with
the second strand being antiparallel to the rest.
Mitochondrial resolvase Ydc2 is capable of resolving
Holliday junctions and cleaves DNA after 5'-CT-3' and
5'-TT-3' sequences. This family also contains the
mitochondrial RNA-splicing protein MRS1 which is
involved in the excision of group I introns.
Length = 254
Score = 28.1 bits (63), Expect = 7.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKK 380
+ A+KKK + KKK K KK +
Sbjct: 151 ILAEKKKPRSKKKSSKNSKKLRID 174
>gnl|CDD|216337 pfam01159, Ribosomal_L6e, Ribosomal protein L6e.
Length = 108
Score = 26.8 bits (60), Expect = 7.4
Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 3/24 (12%)
Query: 361 KKKKKKKKKKKKK---KKKKKKKK 381
K++KKKKKKK + +KK+KK+
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKE 61
>gnl|CDD|223625 COG0551, TopA, Zn-finger domain associated with topoisomerase type
I [DNA replication, recombination, and repair].
Length = 140
Score = 27.5 bits (61), Expect = 7.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKKKK 381
T K K+KK K +K +KK+KK
Sbjct: 94 TEKPKPKEKKCPKCGSRKLVEKKEKK 119
>gnl|CDD|233605 TIGR01865, cas_Csn1, CRISPR-associated protein Cas9/Csn1, subtype
II/NMEMI. CRISPR loci appear to be mobile elements with
a wide host range. This model represents a protein found
only in CRISPR-containing species, near other
CRISPR-associated proteins (cas), as part of the NMENI
subtype of CRISPR/Cas locus. The species range so far
for this protein is animal pathogens and commensals only
[Mobile and extrachromosomal element functions, Other].
Length = 805
Score = 28.5 bits (64), Expect = 7.9
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
K+ K++ KK + K K+
Sbjct: 526 EQGTNFGKRNSKERYKKNEDKIKEF 550
>gnl|CDD|239466 cd03368, Ribosomal_S12, S12-like family, 30S ribosomal protein S12
subfamily; S12 is located at the interface of the large
and small ribosomal subunits of prokaryotes,
chloroplasts and mitochondria, where it plays an
important role in both tRNA and ribosomal subunit
interactions. S12 is essential for maintenance of a
pretranslocation state and, together with S13, functions
as a control element for the rRNA- and tRNA-driven
movements of translocation. Antibiotics such as
streptomycin bind S12 and cause the ribosome to misread
the genetic code.
Length = 108
Score = 26.7 bits (60), Expect = 8.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 356 TLNAKKKKKKKKKKKKKKKK 375
T+N +K +KKKKKK K
Sbjct: 1 TINQLIRKGRKKKKKKSKSP 20
>gnl|CDD|220357 pfam09716, ETRAMP, Malarial early transcribed membrane protein
(ETRAMP). These sequences represent a family of
proteins from the malaria parasite Plasmodium
falciparum, several of which have been shown to be
expressed specifically in the ring stage as well as the
rodent parasite Plasmodium yoelii. A homologue from
Plasmodium chabaudi was localized to the parasitophorous
vacuole membrane. Members have an initial hydrophobic,
Phe/Tyr-rich, stretch long enough to span the membrane,
a highly charged region rich in Lys, a second putative
transmembrane region and a second highly charged, low
complexity sequence region. Some members have up to 100
residues of additional C-terminal sequence. These genes
have been shown to be found in the sub-telomeric regions
of both Plasmodium falciparum and P. yoelii chromosomes.
Length = 82
Score = 26.4 bits (59), Expect = 8.2
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
KKK KK KK +KKKK KK
Sbjct: 29 AKKKKLKKLKKIDDDLEKKKKNKK 52
Score = 26.4 bits (59), Expect = 8.4
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 354 SVTLNAKKKKKKKKKKKKKKKKKKKKK 380
V K KK KK +KKKK KKK
Sbjct: 27 VVAKKKKLKKLKKIDDDLEKKKKNKKK 53
>gnl|CDD|216782 pfam01914, MarC, MarC family integral membrane protein. Integral
membrane protein family that includes the antibiotic
resistance protein MarC. These proteins may be
transporters.
Length = 203
Score = 27.6 bits (62), Expect = 8.8
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 13/76 (17%)
Query: 39 FPFIIKGMLMCFIIITAILGNLLVIISVIKH--RKLRIITNYFVVSLAFADLLVALCVMP 96
FI L F II I GN+ V IS+ ++ + R +AF LL+ L
Sbjct: 1 LKFIFSAFLSLFAIINPI-GNVPVFISLTENYPAEERKRIILRASIIAFLILLLFL---- 55
Query: 97 FNAIVSLTDEWYFGYF 112
+ + F
Sbjct: 56 ------VFGKLILKLF 65
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 27.7 bits (62), Expect = 9.1
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K K K K KK +++ K++ K
Sbjct: 102 KPKPKPKPVKKVEEQPKREVKP 123
>gnl|CDD|223167 COG0089, RplW, Ribosomal protein L23 [Translation, ribosomal
structure and biogenesis].
Length = 94
Score = 26.4 bits (59), Expect = 9.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKK 379
TLN K K K+ K+ +K KK
Sbjct: 54 TLNTKGKTKRAGVKRIGLRKDYKK 77
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.137 0.426
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,428,739
Number of extensions: 1932184
Number of successful extensions: 14042
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11706
Number of HSP's successfully gapped: 842
Length of query: 382
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 283
Effective length of database: 6,546,556
Effective search space: 1852675348
Effective search space used: 1852675348
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.2 bits)