RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16861
(382 letters)
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 270 bits (692), Expect = 7e-87
Identities = 75/220 (34%), Positives = 119/220 (54%), Gaps = 1/220 (0%)
Query: 7 NSLNYTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISV 66
+++ N + + + + T + G++M I++ + GN+LVI ++
Sbjct: 6 DAMGQPGNGSAFLLAPNRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAI 65
Query: 67 IKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFST 126
K +L+ +TNYF+ SLA ADL++ L V+PF A L W FG F C+ W S DV T
Sbjct: 66 AKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVT 125
Query: 127 ASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPD 186
ASI LC I+VDRY+AI P +Y ++ +N +++ VWI+ G+ SF PI + WY
Sbjct: 126 ASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATH 185
Query: 187 HKQYRKHH-PNVCIFVVNVYYALISSSISFWIPGFVMVTM 225
+ + C F N YA+ SS +SF++P +MV +
Sbjct: 186 QEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFV 225
Score = 100 bits (249), Expect = 3e-23
Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 1/153 (0%)
Query: 231 VLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHH-PNVCIFVVNVYYALISSSISFW 289
+++ VWI+ G+ SF PI + WY + + C F N YA+ SS +SF+
Sbjct: 157 ARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFY 216
Query: 290 IPGFVMVTMYYRIYKEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRN 349
+P +MV +Y R+++EA RQ + + + + N
Sbjct: 217 VPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLN 276
Query: 350 VRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
+ + K + +K + +
Sbjct: 277 AAKSELDKAIGRNTNGVITKDEAEKLFNQDVDA 309
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 267 bits (684), Expect = 2e-85
Identities = 77/225 (34%), Positives = 120/225 (53%), Gaps = 2/225 (0%)
Query: 2 NNTIYNSLNYTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLL 61
+ S Y N + ++ ++ + G++M I++ + GN+L
Sbjct: 144 AVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYAADEVWV-VGMGIVMSLIVLAIVFGNVL 202
Query: 62 VIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFD 121
VI ++ K +L+ +TNYF+ SLA ADL++ L V+PF A LT W FG F C+ W S D
Sbjct: 203 VITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSID 262
Query: 122 VYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGW 181
V TASI LC I+VDRY+AI P +Y ++ +N +++ VWI+ G+ SF PI + W
Sbjct: 263 VLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHW 322
Query: 182 YTTPDHKQYRKH-HPNVCIFVVNVYYALISSSISFWIPGFVMVTM 225
Y + + C F N YA+ SS +SF++P +MV +
Sbjct: 323 YRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFV 367
Score = 96.1 bits (239), Expect = 6e-22
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 230 TVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKH-HPNVCIFVVNVYYALISSSISF 288
+++ VWI+ G+ SF PI + WY + + C F N YA+ SS +SF
Sbjct: 298 KARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSF 357
Query: 289 WIPGFVMVTMYYRIYKEAVRQ 309
++P +MV +Y R+++EA RQ
Sbjct: 358 YVPLVIMVFVYSRVFQEAKRQ 378
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 247 bits (633), Expect = 3e-80
Identities = 70/185 (37%), Positives = 111/185 (60%), Gaps = 1/185 (0%)
Query: 42 IIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIV 101
+LM +++ + GN+LVI ++ ++L+ +TN F+ SLA ADL+V L V+PF A +
Sbjct: 12 AGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATL 71
Query: 102 SLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLM 161
+ W +G F+C++W S DV TASI LC I++DRY AI P +Y +M + ++
Sbjct: 72 VVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVI 131
Query: 162 LSNVWILPGIISFTPIMLGWYTTPDHKQYR-KHHPNVCIFVVNVYYALISSSISFWIPGF 220
+ VW + ++SF PIM+ W+ D + + P C FV N YA+ SS ISF+IP
Sbjct: 132 ICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLL 191
Query: 221 VMVTM 225
+M+ +
Sbjct: 192 IMIFV 196
Score = 89.0 bits (221), Expect = 4e-20
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 228 VNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYR-KHHPNVCIFVVNVYYALISSSI 286
+++ VW + ++SF PIM+ W+ D + + P C FV N YA+ SS I
Sbjct: 125 RARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSII 184
Query: 287 SFWIPGFVMVTMYYRIYKEAVRQ 309
SF+IP +M+ + R+Y+EA Q
Sbjct: 185 SFYIPLLIMIFVALRVYREAKEQ 207
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 252 bits (644), Expect = 5e-80
Identities = 53/205 (25%), Positives = 100/205 (48%), Gaps = 2/205 (0%)
Query: 21 NFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFV 80
+ +++S T F + ++ + + I+GN+LV++S+ +R L+ + NYF+
Sbjct: 3 DSTDSSDNSLALTSPYKTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFL 62
Query: 81 VSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRY 140
SLA ADL++ + M + ++ W G +CD+W + D S AS+++L IS DRY
Sbjct: 63 FSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRY 122
Query: 141 YAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIF 200
+ + KPL YP+ +M++ W+L I+ P +L W + F
Sbjct: 123 FCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWA-PAILFWQFIVGVRTVEDGEC-YIQF 180
Query: 201 VVNVYYALISSSISFWIPGFVMVTM 225
N ++ +F++P +M +
Sbjct: 181 FSNAAVTFGTAIAAFYLPVIIMTVL 205
Score = 91.3 bits (226), Expect = 2e-20
Identities = 20/150 (13%), Positives = 49/150 (32%), Gaps = 3/150 (2%)
Query: 231 VLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWI 290
+M++ W+L I+ P +L W + F N ++ +F++
Sbjct: 140 AGMMIAAAWVLSFILWA-PAILFWQFIVGVRTVEDGEC-YIQFFSNAAVTFGTAIAAFYL 197
Query: 291 PGFVMVTMYYRIYKEAVRQRIALSRTS-SNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRN 349
P +M +Y+ I + + + + I +EG + + +P
Sbjct: 198 PVIIMTVLYWHISRASKSRINIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNA 257
Query: 350 VRTHSVTLNAKKKKKKKKKKKKKKKKKKKK 379
++ + K + +K +
Sbjct: 258 AKSELDKAIGRNTNGVITKDEAEKLFNQDV 287
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 243 bits (622), Expect = 6e-77
Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 2/184 (1%)
Query: 42 IIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIV 101
+ +++ I + + NLLV+ +V RKL + N ++VSL+ ADL+V VMP N +
Sbjct: 9 MPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILY 68
Query: 102 SLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLM 161
L +W G +C W S D STASI + + +DRY ++ +PL+Y +
Sbjct: 69 LLMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASAT 128
Query: 162 LSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFV 221
+ W L + PI+ GW R+ F ++ ++++ I+F++P +
Sbjct: 129 ILGAWFLSFLWVI-PIL-GWNHFMQQTSVRREDKCETDFYDVTWFKVMTAIINFYLPTLL 186
Query: 222 MVTM 225
M+
Sbjct: 187 MLWF 190
Score = 85.5 bits (211), Expect = 2e-18
Identities = 22/153 (14%), Positives = 51/153 (33%), Gaps = 3/153 (1%)
Query: 231 VLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWI 290
+ W L + PI+ GW R+ F ++ ++++ I+F++
Sbjct: 125 ASATILGAWFLSFLWVI-PIL-GWNHFMQQTSVRREDKCETDFYDVTWFKVMTAIINFYL 182
Query: 291 PGFVMVTMYYRIYKEAVRQRIALSRTS-SNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRN 349
P +M+ Y +IYK + + I +EG + + +P
Sbjct: 183 PTLLMLWFYAKIYKAVRQHCNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNA 242
Query: 350 VRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
++ + K + +K + +
Sbjct: 243 AKSELDKAIGRNTNGVITKDEAEKLFNQDVDAA 275
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 241 bits (616), Expect = 1e-75
Identities = 79/212 (37%), Positives = 114/212 (53%), Gaps = 14/212 (6%)
Query: 18 TSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITN 77
++ N + NST P + C +I+ + GN LV ++V+K R L+ TN
Sbjct: 15 QLSSHLNYTCGAENSTGASQARPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTN 74
Query: 78 YFVVSLAFADLLVALCVMPFNAIVSLTDE-WYFGYFMCDVWNSFDVYFSTASILHLCCIS 136
Y VVSLA ADLLVA VMP+ + +T W F CDV+ + DV TASI +LC IS
Sbjct: 75 YLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWNLCAIS 134
Query: 137 VDRYYAIVKPLQYPIIMNQNT---VLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKH 193
+DRY A+V P+ Y Q++ V LM++ VW+L +S P++ G+ TT D
Sbjct: 135 IDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSC-PLLFGFNTTGD------- 186
Query: 194 HPNVCIFVVNVYYALISSSISFWIPGFVMVTM 225
P VC N + + SS +SF++P V V +
Sbjct: 187 -PTVCSI-SNPDFVIYSSVVSFYLPFGVTVLV 216
Score = 81.3 bits (200), Expect = 6e-17
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 13/127 (10%)
Query: 231 VLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWI 290
V LM++ VW+L +S P++ G+ TT D P VC N + + SS +SF++
Sbjct: 159 VALMITAVWVLAFAVSC-PLLFGFNTTGD--------PTVCSIS-NPDFVIYSSVVSFYL 208
Query: 291 PGFVMVTMYYRIYKEAVRQ---RIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVT 347
P V V +Y RIY ++ I + I +EG + + +P
Sbjct: 209 PFGVTVLVYARIYVVLKQRRRKNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSL 268
Query: 348 RNVRTHS 354
++
Sbjct: 269 NAAKSEL 275
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 230 bits (586), Expect = 3e-71
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 12/214 (5%)
Query: 21 NFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFV 80
++ + I + + I + AILGN+LV +V + L+ +TNYFV
Sbjct: 1 DYKDDDDAMGQPVGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFV 60
Query: 81 VSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRY 140
VSLA AD+ V + +PF +S + C F + + +SI L I++DRY
Sbjct: 61 VSLAAADIAVGVLAIPFAITIST--GFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRY 118
Query: 141 YAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKH------H 194
AI PL+Y ++ +++ W+L I TP++ GW K+ + H
Sbjct: 119 IAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPML-GWNNCGQPKEGKNHSQGCGEG 177
Query: 195 PNVCIF--VVNVYYALISSSI-SFWIPGFVMVTM 225
C+F VV + Y + + +P +M+ +
Sbjct: 178 QVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGV 211
Score = 81.3 bits (200), Expect = 5e-17
Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 11/158 (6%)
Query: 231 VLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKH------HPNVCIF--VVNVYYALI 282
+++ W+L I TP++ GW K+ + H C+F VV + Y +
Sbjct: 136 AKGIIAICWVLSFAIGLTPML-GWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVY 194
Query: 283 SSSI-SFWIPGFVMVTMYYRIYKEAVRQRIALSRTSSNI-VSPVIQSTSEGSAVVTVSDT 340
+ +P +M+ +Y RI+ A RQ + + I +EG + +
Sbjct: 195 FNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHL 254
Query: 341 PQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKK 378
+P ++ + K + +K +
Sbjct: 255 LTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQD 292
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 225 bits (574), Expect = 8e-70
Identities = 57/227 (25%), Positives = 99/227 (43%), Gaps = 20/227 (8%)
Query: 8 SLNYTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVI 67
+L+Y + + + + P + + + I + AILGN+LV +V
Sbjct: 6 ALSYIFCLVFADYKDDDDGAPPIMGSS--------VYITVELAIAVLAILGNVLVCWAVW 57
Query: 68 KHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTA 127
+ L+ +TNYFVVSLA AD+ V + +PF +S + C F + + +
Sbjct: 58 LNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST--GFCAACHGCLFIACFVLVLTQS 115
Query: 128 SILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDH 187
SI L I++DRY AI PL+Y ++ +++ W+L I TP++ GW
Sbjct: 116 SIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPML-GWNNCGQP 174
Query: 188 KQYRKH------HPNVCIF---VVNVYYALISSSISFWIPGFVMVTM 225
K+ + H C+F V Y + +P +M+ +
Sbjct: 175 KEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGV 221
Score = 73.6 bits (180), Expect = 2e-14
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 231 VLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKH------HPNVCIF---VVNVYYAL 281
+++ W+L I TP++ GW K+ + H C+F V Y
Sbjct: 146 AKGIIAICWVLSFAIGLTPML-GWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVY 204
Query: 282 ISSSISFWIPGFVMVTMYYRIYKEAVRQRIALSRT 316
+ +P +M+ +Y RI+ A RQ L
Sbjct: 205 FNFFACVLVPLLLMLGVYLRIFLAARRQLADLEDN 239
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 174 bits (441), Expect = 1e-49
Identities = 55/382 (14%), Positives = 132/382 (34%), Gaps = 29/382 (7%)
Query: 2 NNTIYNSLNYTYNI-NYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNL 60
+++ + +NY + +Y T N S NS + ++ I IL N+
Sbjct: 31 RSSVSDYVNYDIIVRHYNYTGKLNISADKENSIK--------LTSVVFILICCFIILENI 82
Query: 61 LVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSF 120
V++++ K +K YF+ +LA +DLL + ++S + +
Sbjct: 83 FVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTAN-LLLSGATTYKLTPAQWFLREGS 141
Query: 121 DVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLG 180
+AS+ L I+++RY ++K N + L++S W++ I+ PIM G
Sbjct: 142 MFVALSASVFSLLAIAIERYITMLKMK-LHNGSNNFRLFLLISACWVISLILGGLPIM-G 199
Query: 181 WYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMLVVNTVLLMLSNVWI 240
W + + + + +Y + + F + +V + L+ N++
Sbjct: 200 WNCISAL-----SSCSTVLPLYHKHYI-LFCTTVFTLLLLSIVILYCRIYSLVRTRNIF- 252
Query: 241 LPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMYY 300
ML K Y+ I + ++ S + + +
Sbjct: 253 ---------EMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTN 303
Query: 301 RIYKEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAK 360
+ + ++ V ++++ ++ ++ + + +
Sbjct: 304 GVITKD-EAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGF 362
Query: 361 KKKKKKKKKKKKKKKKKKKKKS 382
+ ++K+ + KS
Sbjct: 363 TNSLRMLQQKRWDEAAVNLAKS 384
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 135 bits (341), Expect = 2e-36
Identities = 55/226 (24%), Positives = 108/226 (47%), Gaps = 12/226 (5%)
Query: 1 MNNTIYNSLNYTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNL 60
M+N + + + NI STN S + F + + + I++T+++GN+
Sbjct: 1 MDNVLPVDSDLSPNI---STNTSEPNQFVQPAWQIV------LWAAAYTVIVVTSVVGNV 51
Query: 61 LVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSF 120
+V+ ++ H+++R +TNYF+V+LAFA+ +A N ++ +EWY+G F C N F
Sbjct: 52 VVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFF 111
Query: 121 DVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISF-TPIML 179
+ ASI + ++ DRY AI+ PLQ ++ +++ +W+L +++F
Sbjct: 112 PIAAVFASIYSMTAVAFDRYMAIIHPLQ--PRLSATATKVVICVIWVLALLLAFPQGYYS 169
Query: 180 GWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTM 225
T P P + Y + + + +++P V+
Sbjct: 170 TTETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYA 215
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 129 bits (327), Expect = 1e-34
Identities = 44/228 (19%), Positives = 85/228 (37%), Gaps = 21/228 (9%)
Query: 9 LNYTYNINYTSTNFSNTSLFPTNSTIHIHIFP-----FIIKGMLMCFIIITAILGNLLVI 63
+N T N+ FSN + + + F + M +I+ N L +
Sbjct: 2 MNGTEGPNFYVP-FSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTL 60
Query: 64 ISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVY 123
++H+KLR NY +++LA ADL + SL + FG C++ F
Sbjct: 61 YVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATL 120
Query: 124 FSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYT 183
++ L ++++RY + KP+ +N ++ ++ W++ + P ++GW
Sbjct: 121 GGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVMALACAA-PPLVGWSR 178
Query: 184 TPDHKQYRKHHPNVCIF--------VVNVYYALISSSISFWIPGFVMV 223
C N + + + F IP V+
Sbjct: 179 YIPEG-----MQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIF 221
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 126 bits (318), Expect = 8e-33
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 12/174 (6%)
Query: 19 STNFSNTSLFPTNSTIHIH----IFP------FIIKGMLMCFIIITAILGNLLVIISVIK 68
+ + + N +I +H F + G+ + I GN +VI K
Sbjct: 2 GRDLRDNETWWYNPSIVVHPHWREFDQVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTK 61
Query: 69 HRKLRIITNYFVVSLAFADLLVALC-VMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTA 127
+ L+ N F+++LAF+D +L P I +W FG+ C V+ F
Sbjct: 62 TKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFM 121
Query: 128 SILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGW 181
SI+ + IS+DRY I +P+ M+ +M+ VW+ + + P + GW
Sbjct: 122 SIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGP-IFGW 174
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 124 bits (312), Expect = 5e-32
Identities = 48/228 (21%), Positives = 88/228 (38%), Gaps = 6/228 (2%)
Query: 1 MNNTIYNSLNYTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLM---CFIIITAIL 57
+++ + + + T+ P +K ++ + + +L
Sbjct: 82 IDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLGAFLPLGLKVTIVGLYLAVCVGGLL 141
Query: 58 GNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVW 117
GN LV+ +++H K++ TN ++ +LA AD LV L + PF L W FG +C
Sbjct: 142 GNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLTL-PFQGTDILLGFWPFGNALCKTV 200
Query: 118 NSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISF-TP 176
+ D Y S L +SVDRY AI P++ + + + +W L ++
Sbjct: 201 IAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVA 260
Query: 177 IMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVT 224
IM + + P +A+ SF +P V+
Sbjct: 261 IMGSAQVEDEEIECLVEIPT-PQDYWGPVFAICIFLFSFIVPVLVISV 307
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 118 bits (297), Expect = 8e-30
Identities = 47/202 (23%), Positives = 82/202 (40%), Gaps = 5/202 (2%)
Query: 24 NTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSL 83
+ SL P + + I L + + + GN LV+ ++++ K++ TN ++ +L
Sbjct: 2 SHSLCPQTGSPSM--VTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNL 59
Query: 84 AFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAI 143
A AD L +PF ++ L W FG +C + S D Y SI LC +SVDRY A+
Sbjct: 60 ALADALATST-LPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAV 118
Query: 144 VKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYR-KHHPNVCIFVV 202
P++ ++ WIL I P+M T + +
Sbjct: 119 CHPVKALDFRTPRNAKIVNVCNWILSSAIG-LPVMFMATTKYRQGSIDCTLTFSHPTWYW 177
Query: 203 NVYYALISSSISFWIPGFVMVT 224
+ +F +P ++
Sbjct: 178 ENLLKICVFIFAFIMPVLIITV 199
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 117 bits (295), Expect = 2e-29
Identities = 59/225 (26%), Positives = 95/225 (42%), Gaps = 10/225 (4%)
Query: 1 MNNTIYNSLNYTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNL 60
+IY S NYT + + F + IF I I +T I+GN
Sbjct: 12 EGISIYTSDNYTEEMGSGDYDSMKEPCFREENANFNKIFLPTI----YSIIFLTGIVGNG 67
Query: 61 LVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSF 120
LVI+ + +KLR +T+ + + L+ ADLL + +PF A V WYFG F+C +
Sbjct: 68 LVILVMGYQKKLRSMTDKYRLHLSVADLLFVIT-LPFWA-VDAVANWYFGNFLCKAVHVI 125
Query: 121 DVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISF-TPIML 179
+S+ L IS+DRY AIV ++ VWI +++ I
Sbjct: 126 YTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFA 185
Query: 180 GWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVT 224
D + +PN VV + ++ + +PG V+++
Sbjct: 186 NVSEADDRYICDRFYPNDLWVVVFQFQHIM---VGLILPGIVILS 227
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein;
NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Length = 32
Score = 50.5 bits (121), Expect = 5e-09
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 126 TASILHLCCISVDRYYAIVKPLQYPIIMN 154
T+SI+HLC IS+DRY++I + ++Y +
Sbjct: 1 TSSIVHLCAISLDRYWSITQAIEYNLKRT 29
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 2e-05
Identities = 65/389 (16%), Positives = 113/389 (29%), Gaps = 136/389 (34%)
Query: 53 ITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLV-----ALCVMPFNAIVSLTDEW 107
I A+ LL + +I NY + AL F A+ +
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL----FRAVGEGNAQL 156
Query: 108 Y--F---GYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLML 162
F G N+ D YF L+ Y+ +V L I L L
Sbjct: 157 VAIFGGQG-------NT-DDYFEELRDLY------QTYHVLVGDL----IKFSAETLSEL 198
Query: 163 SNVWILPGIISFTPI------MLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFW 216
+ + +L W P + P + Y L+S IS
Sbjct: 199 I-----RTTLDAEKVFTQGLNILEWLENPSNT------P-------DKDY-LLSIPISC- 238
Query: 217 IPGFVMVTMLVVNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVN 276
P L+ ++ L++ + T +LG+ + R +
Sbjct: 239 -P-------LI---GVIQLAHYVV-------TAKLLGF----TPGELRSYLKGATGHSQG 276
Query: 277 VYYAL-ISSSISFWIPGFVMVTMYYRIYKEAVR---------QRIALSRTSSNIVSPVIQ 326
+ A+ I+ + S W F + ++A+ A TS + P I
Sbjct: 277 LVTAVAIAETDS-W-ESF------FVSVRKAITVLFFIGVRCYE-AYPNTS---LPPSIL 324
Query: 327 STS----EG--SAVVTVSDTPQST------------PVTRNV--------RTHSVT---- 356
S EG S ++++S+ Q P + V + V+
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ 384
Query: 357 ----LNAKKKKKKKKKKKKKKKKKKKKKK 381
LN +K K + + ++K
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERK 413
Score = 37.0 bits (85), Expect = 0.013
Identities = 33/172 (19%), Positives = 56/172 (32%), Gaps = 40/172 (23%)
Query: 24 NTSLFPTNSTIHIHIF--P--FIIKG---MLMCFII----ITAILGNLLVIISVIKH--R 70
N+ L P + I + ++ G L + A G + S I R
Sbjct: 357 NSHL-PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG---LDQSRIPFSER 412
Query: 71 KLRIITNYFVVSLAF-ADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSF---DVYFST 126
KL+ + V+ F + LLV + +V + V+++F D+ +
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472
Query: 127 ASILH-LC-CISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWIL---PGIIS 173
SI + CI I P+++ IL PG S
Sbjct: 473 GSISERIVDCI-------IRLPVKWE-------TTTQFKATHILDFGPGGAS 510
Score = 30.0 bits (67), Expect = 1.9
Identities = 24/121 (19%), Positives = 30/121 (24%), Gaps = 50/121 (41%)
Query: 29 PTNSTIHIHIFPFIIKG-------MLMCFIIITAILGNLLVIISVIKHRKLRII------ 75
P N TIH F KG M F I I I
Sbjct: 1669 PVNLTIH---FGGE-KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG 1724
Query: 76 ----TNY-----FVVSLA-FADL----------------L---VALC----VMPFNAIVS 102
T + ++ A F DL L AL VM ++V
Sbjct: 1725 LLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE 1784
Query: 103 L 103
+
Sbjct: 1785 V 1785
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 37.5 bits (86), Expect = 0.005
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 326 QSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
Q T+ SA+V T P R + K KK K ++KKKK+ K K
Sbjct: 44 QLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTK 99
Score = 35.6 bits (81), Expect = 0.021
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 339 DTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
P+ P R + KK K ++KKKK+ K K K+
Sbjct: 61 QNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKR 103
Score = 32.5 bits (73), Expect = 0.18
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K KK K ++KKKK+ K K
Sbjct: 80 PKPKKPKPQEKKKKQPAKTKPGK 102
Score = 32.1 bits (72), Expect = 0.25
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
++KK+ K+ K KK K ++
Sbjct: 68 PPRQKKQAPKQPPKPKKPKPQEK 90
Score = 31.7 bits (71), Expect = 0.30
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
+ ++KK+ K+ K KK K
Sbjct: 65 PRPPPRQKKQAPKQPPKPKKPKPQ 88
Score = 31.7 bits (71), Expect = 0.36
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K K ++KKKK+ K K K+++
Sbjct: 84 KPKPQEKKKKQPAKTKPGKRQRM 106
Score = 29.8 bits (66), Expect = 1.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKK 380
K ++KKKK+ K K K+++
Sbjct: 83 KKPKPQEKKKKQPAKTKPGKRQR 105
Score = 29.0 bits (64), Expect = 2.4
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 341 PQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
Q +T V + + + + + ++KK+ K+
Sbjct: 40 SQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPP 80
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 35.7 bits (82), Expect = 0.024
Identities = 13/78 (16%), Positives = 25/78 (32%)
Query: 304 KEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKK 363
E ++ + S S + + + +V + + + +
Sbjct: 31 AEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDG 90
Query: 364 KKKKKKKKKKKKKKKKKK 381
KKKKKKKKK+
Sbjct: 91 DGDGATGKKKKKKKKKRG 108
Score = 34.9 bits (80), Expect = 0.038
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
+ KKKKKKKKK+ K
Sbjct: 87 DGDGDGDGATGKKKKKKKKKRGPK 110
Score = 34.9 bits (80), Expect = 0.040
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
+ KKKKKKKKK+ K ++
Sbjct: 89 DGDGDGATGKKKKKKKKKRGPKVQT 113
Score = 34.9 bits (80), Expect = 0.046
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
+ + KKKKKKKKK+
Sbjct: 84 DDEDGDGDGDGATGKKKKKKKKKRG 108
Score = 34.1 bits (78), Expect = 0.077
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
KKKKKKKKK+ K +
Sbjct: 91 DGDGATGKKKKKKKKKRGPKVQTD 114
Score = 34.1 bits (78), Expect = 0.078
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
KKKKKKKKK+
Sbjct: 86 EDGDGDGDGATGKKKKKKKKKRGPK 110
Score = 28.3 bits (63), Expect = 5.2
Identities = 9/78 (11%), Positives = 20/78 (25%)
Query: 304 KEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKK 363
+ A ++ ++ G V R + ++ + +
Sbjct: 25 EGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDED 84
Query: 364 KKKKKKKKKKKKKKKKKK 381
+ KKKKK
Sbjct: 85 DEDGDGDGDGATGKKKKK 102
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 35.2 bits (80), Expect = 0.030
Identities = 16/86 (18%), Positives = 21/86 (24%), Gaps = 8/86 (9%)
Query: 304 KEAVRQRIALSRTSSNIVSPVIQ--------STSEGSAVVTVSDTPQSTPVTRNVRTHSV 355
KE R A S I + S S + + +
Sbjct: 225 KEEDYVRYAHGLISDYIPKELSDDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYT 284
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKKKK 381
N K K KK K +K K
Sbjct: 285 KFNTKDLKTGKKNSKMTAAQKALAKV 310
Score = 31.3 bits (70), Expect = 0.47
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K KK K +K K KS
Sbjct: 291 LKTGKKNSKMTAAQKALAKVDKS 313
Score = 31.0 bits (69), Expect = 0.58
Identities = 8/25 (32%), Positives = 9/25 (36%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
KK K +K K K KS
Sbjct: 293 TGKKNSKMTAAQKALAKVDKSGMKS 317
Score = 31.0 bits (69), Expect = 0.59
Identities = 9/53 (16%), Positives = 14/53 (26%), Gaps = 13/53 (24%)
Query: 343 STPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKK-------------KKKKKKS 382
+ ++ L KK K +K K K KK+
Sbjct: 277 VEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSIDAFFGAKNKKT 329
Score = 29.4 bits (65), Expect = 1.8
Identities = 9/29 (31%), Positives = 10/29 (34%), Gaps = 6/29 (20%)
Query: 359 AKKKKKKKKKKKKK------KKKKKKKKK 381
A+K K K K K KK K
Sbjct: 303 AQKALAKVDKSGMKSIDAFFGAKNKKTGK 331
Score = 27.9 bits (61), Expect = 5.3
Identities = 8/35 (22%), Positives = 10/35 (28%), Gaps = 12/35 (34%)
Query: 358 NAKKKKKKKKKKKK------------KKKKKKKKK 380
N+K +K K K KK K
Sbjct: 297 NSKMTAAQKALAKVDKSGMKSIDAFFGAKNKKTGK 331
Score = 27.1 bits (59), Expect = 9.9
Identities = 8/33 (24%), Positives = 10/33 (30%), Gaps = 9/33 (27%)
Query: 356 TLNAKKKKKKKKKKK---------KKKKKKKKK 379
+ A +K K K K KK K
Sbjct: 299 KMTAAQKALAKVDKSGMKSIDAFFGAKNKKTGK 331
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D
3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D
3azj_D 3azk_D 3azl_D 3azm_D ...
Length = 126
Score = 33.6 bits (76), Expect = 0.034
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
A KK KK K +KK KK+KKS
Sbjct: 10 APKKGSKKAVTKTQKKGDKKRKKS 33
Score = 30.9 bits (69), Expect = 0.27
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
A KK KK K +KK KK+
Sbjct: 8 APAPKKGSKKAVTKTQKKGDKKR 30
Score = 30.9 bits (69), Expect = 0.28
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
KK K +KK KK+KK +K+S
Sbjct: 14 GSKKAVTKTQKKGDKKRKKSRKES 37
Score = 30.5 bits (68), Expect = 0.31
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
+ KK KK K +KK KK
Sbjct: 6 KSAPAPKKGSKKAVTKTQKKGDKKR 30
Score = 30.5 bits (68), Expect = 0.42
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
KK KK K +KK KK+K
Sbjct: 9 PAPKKGSKKAVTKTQKKGDKKRK 31
Score = 29.8 bits (66), Expect = 0.61
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K KK K +KK KK+KK +
Sbjct: 13 KGSKKAVTKTQKKGDKKRKKSR 34
Score = 29.4 bits (65), Expect = 1.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
KK K +KK KK+KK +K
Sbjct: 13 KGSKKAVTKTQKKGDKKRKKSRK 35
Score = 29.0 bits (64), Expect = 1.2
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
AK KK KK K +KK
Sbjct: 5 AKSAPAPKKGSKKAVTKTQKKGD 27
Score = 27.4 bits (60), Expect = 3.8
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
+ K KK KK K +K
Sbjct: 2 PEPAKSAPAPKKGSKKAVTKTQK 24
Score = 27.1 bits (59), Expect = 5.2
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K KK KK K +KK
Sbjct: 5 AKSAPAPKKGSKKAVTKTQKKGD 27
Score = 27.1 bits (59), Expect = 6.0
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K KK KK K +KK
Sbjct: 4 PAKSAPAPKKGSKKAVTKTQKKG 26
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 33.5 bits (76), Expect = 0.037
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
K KK K +K K KKKK+
Sbjct: 7 GKAAKKAGKAQKNITKTDKKKKRK 30
Score = 32.7 bits (74), Expect = 0.065
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
AKK K +K K KKKK+K+K
Sbjct: 10 AKKAGKAQKNITKTDKKKKRKRKE 33
Score = 32.4 bits (73), Expect = 0.072
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
A KK K +K K KKKK+K+
Sbjct: 9 AAKKAGKAQKNITKTDKKKKRKRK 32
Score = 32.0 bits (72), Expect = 0.11
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
+ K KK K +K K KKKK
Sbjct: 6 SGKAAKKAGKAQKNITKTDKKKK 28
Score = 31.6 bits (71), Expect = 0.13
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
K KK K +K K KK
Sbjct: 4 KTSGKAAKKAGKAQKNITKTDKKK 27
Score = 31.2 bits (70), Expect = 0.18
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
KK K +K K KKKK+K
Sbjct: 8 KAAKKAGKAQKNITKTDKKKKRKR 31
Score = 30.8 bits (69), Expect = 0.26
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K K +K K KKKK+K+K+S
Sbjct: 12 KAGKAQKNITKTDKKKKRKRKES 34
Score = 30.4 bits (68), Expect = 0.38
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K K KK K +K K K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDK 25
Score = 28.5 bits (63), Expect = 1.5
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K K KK K +K K
Sbjct: 2 PPKTSGKAAKKAGKAQKNITKTD 24
Score = 28.1 bits (62), Expect = 2.6
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 361 KKKKKKKKKKKKKKKKKKKKKS 382
K K KK K +K K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTD 24
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 34.1 bits (77), Expect = 0.056
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 351 RTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
R + L K+ +KK K +K ++K +
Sbjct: 44 RRNFAELKVKRLRKKFALKTLRKARRKLIYE 74
Score = 31.0 bits (69), Expect = 0.56
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
+ +KK K +K ++K +K
Sbjct: 53 KRLRKKFALKTLRKARRKLIYEK 75
Score = 30.2 bits (67), Expect = 0.97
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
+KK K +K ++K +K K
Sbjct: 55 LRKKFALKTLRKARRKLIYEKAKH 78
Score = 29.1 bits (64), Expect = 2.6
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
KK++ + K K+ +KK K
Sbjct: 42 KKRRNFAELKVKRLRKKFALKT 63
Score = 27.5 bits (60), Expect = 7.4
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K K +K ++K +K K
Sbjct: 57 KKFALKTLRKARRKLIYEKAKHY 79
Score = 27.5 bits (60), Expect = 7.6
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K++ + K K+ +KK K
Sbjct: 43 KRRNFAELKVKRLRKKFALKTL 64
Score = 27.5 bits (60), Expect = 7.6
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
A K +K ++K +K K K+
Sbjct: 60 ALKTLRKARRKLIYEKAKHYHKEY 83
Score = 27.1 bits (59), Expect = 8.5
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
KKK++ + K K+ +KK K
Sbjct: 39 TLKKKRRNFAELKVKRLRKKFALK 62
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 32.3 bits (74), Expect = 0.063
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
K+ +K++ KK K ++
Sbjct: 87 YEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 30.8 bits (70), Expect = 0.21
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
+ K+ +K++ KK K
Sbjct: 86 GYEMKRVGDYYVFEKRESKKSKGG 109
Score = 30.8 bits (70), Expect = 0.21
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 353 HSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
K+ +K++ KK K + +
Sbjct: 83 VPEGYEMKRVGDYYVFEKRESKKSKGGEAA 112
Score = 27.3 bits (61), Expect = 4.2
Identities = 3/22 (13%), Positives = 9/22 (40%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K+ + + K+ +K+
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKR 101
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_e
Length = 244
Score = 33.7 bits (76), Expect = 0.066
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 351 RTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
R A+KK+K +K K + K
Sbjct: 18 RRREEVWAAEKKQKVAAEKIKAAENTKVIYAR 49
Score = 30.2 bits (67), Expect = 1.1
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
+K +K K + K + +
Sbjct: 29 KQKVAAEKIKAAENTKVIYARAEQ 52
Score = 29.8 bits (66), Expect = 1.4
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K+++++ +KK+K +K
Sbjct: 16 LKRRREEVWAAEKKQKVAAEKI 37
Score = 28.3 bits (62), Expect = 3.8
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K+++++ +KK+K +K K+
Sbjct: 17 KRRREEVWAAEKKQKVAAEKIKA 39
Score = 28.3 bits (62), Expect = 3.9
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K+++++ +KK+K +K
Sbjct: 15 ILKRRREEVWAAEKKQKVAAEK 36
Score = 27.1 bits (59), Expect = 8.2
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
A+K K + K + ++ +
Sbjct: 34 AEKIKAAENTKVIYARAEQYAGEY 57
Score = 27.1 bits (59), Expect = 9.6
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
A +K K + K + ++
Sbjct: 33 AAEKIKAAENTKVIYARAEQYAG 55
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_8
Length = 143
Score = 32.5 bits (73), Expect = 0.11
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
+KK K+ K + KK KKK +
Sbjct: 9 QKKTKEAIAKAAQAKKGGKKKWT 31
Score = 31.7 bits (71), Expect = 0.17
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
A +KK K+ K + KK KKK
Sbjct: 7 AGQKKTKEAIAKAAQAKKGGKKK 29
Score = 31.3 bits (70), Expect = 0.25
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
A +KK K+ K + KK KK
Sbjct: 6 AAGQKKTKEAIAKAAQAKKGGKK 28
Score = 30.1 bits (67), Expect = 0.61
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K K+ K + KK KKK K
Sbjct: 11 KTKEAIAKAAQAKKGGKKKWTK 32
Score = 30.1 bits (67), Expect = 0.62
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K + KK KKK K K K K
Sbjct: 16 IAKAAQAKKGGKKKWTKGKAKDK 38
Score = 29.8 bits (66), Expect = 0.85
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
K+ K + KK KKK K K+
Sbjct: 12 TKEAIAKAAQAKKGGKKKWTKGKA 35
Score = 29.4 bits (65), Expect = 1.2
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K + KK KKK K K K
Sbjct: 14 EAIAKAAQAKKGGKKKWTKGKAK 36
Score = 29.0 bits (64), Expect = 1.5
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K+ K + KK KKK K
Sbjct: 11 KTKEAIAKAAQAKKGGKKKWTKG 33
Score = 28.6 bits (63), Expect = 2.2
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKK 379
+ KK KKK K K K K
Sbjct: 17 AKAAQAKKGGKKKWTKGKAKDK 38
Score = 28.2 bits (62), Expect = 2.9
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 341 PQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKK 377
+ + ++ A+ KK KKK K K K K
Sbjct: 2 GKQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 32.8 bits (74), Expect = 0.14
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
+ K +K K +++K + K++K
Sbjct: 16 DEKLRKAKAEQRKASSAQMKQRKA 39
Score = 32.4 bits (73), Expect = 0.20
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 351 RTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
L K +++K + K++K +
Sbjct: 13 LARDEKLRKAKAEQRKASSAQMKQRKAEWIS 43
Score = 30.9 bits (69), Expect = 0.51
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
AK +++K + K++K + K
Sbjct: 22 AKAEQRKASSAQMKQRKAEWISK 44
Score = 30.5 bits (68), Expect = 0.70
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
A+++K + K++K + K +
Sbjct: 24 AEQRKASSAQMKQRKAEWISKAQK 47
Score = 30.5 bits (68), Expect = 0.77
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
KK + +K +K K +++K
Sbjct: 11 KKLARDEKLRKAKAEQRKASSA 32
Score = 29.0 bits (64), Expect = 2.2
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K + +K +K K +++K +
Sbjct: 12 KLARDEKLRKAKAEQRKASSAQ 33
Score = 28.2 bits (62), Expect = 3.7
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKK 380
+K + K++K + K +K
Sbjct: 24 AEQRKASSAQMKQRKAEWISKAQK 47
Score = 27.8 bits (61), Expect = 5.1
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
A + K++K + K +K +
Sbjct: 29 ASSAQMKQRKAEWISKAQKYAAEY 52
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Length = 151
Score = 32.1 bits (73), Expect = 0.14
Identities = 4/23 (17%), Positives = 6/23 (26%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
A KK +K+
Sbjct: 2 APKKTAPVQKEVISYGPPNVGAN 24
Score = 29.0 bits (65), Expect = 1.6
Identities = 3/22 (13%), Positives = 6/22 (27%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
KK +K+ +
Sbjct: 4 KKTAPVQKEVISYGPPNVGANE 25
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP,
pseudouridine synthase, guide RNA, isomerase
biosynthetic protein-RNA complex; HET: ATP; 2.30A
{Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Length = 104
Score = 31.1 bits (70), Expect = 0.14
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 337 VSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
V+ P+ + V K+K+ KK K+K+ KKKK+ +
Sbjct: 60 VAIKPKVSNPEIYVGEVLYVDERKRKESPKKNKEKRMKKKKRLNR 104
Score = 28.4 bits (63), Expect = 1.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 361 KKKKKKKKKKKKKKKKKKKKKS 382
++K+K+ KK K+K+ KKKK
Sbjct: 80 DERKRKESPKKNKEKRMKKKKR 101
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e
3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 32.9 bits (74), Expect = 0.15
Identities = 3/31 (9%), Positives = 10/31 (32%)
Query: 351 RTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
+ ++ +K K+K+ +
Sbjct: 16 SKAQQKTAEQVAAERAARKAANKEKRAIILE 46
Score = 31.3 bits (70), Expect = 0.44
Identities = 3/23 (13%), Positives = 10/23 (43%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
++ +K K+K+ ++
Sbjct: 25 QVAAERAARKAANKEKRAIILER 47
Score = 30.2 bits (67), Expect = 0.84
Identities = 4/24 (16%), Positives = 12/24 (50%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
A ++ +K K+K+ ++ +
Sbjct: 27 AAERAARKAANKEKRAIILERNAA 50
Score = 29.0 bits (64), Expect = 2.5
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
KK K ++K ++ ++ +K
Sbjct: 14 KKSKAQQKTAEQVAAERAARKA 35
Score = 28.6 bits (63), Expect = 3.4
Identities = 3/24 (12%), Positives = 9/24 (37%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKK 380
+ +K K+K+ ++
Sbjct: 27 AAERAARKAANKEKRAIILERNAA 50
Score = 27.9 bits (61), Expect = 4.8
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 351 RTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
A +K K+K+ ++ +K
Sbjct: 23 AEQVAAERAARKAANKEKRAIILERNAAYQK 53
Score = 27.9 bits (61), Expect = 4.9
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
A+K K+K+ ++ +K+
Sbjct: 32 ARKAANKEKRAIILERNAAYQKEY 55
Score = 27.9 bits (61), Expect = 5.7
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
+ KK K ++K ++ ++ +K
Sbjct: 11 SQLKKSKAQQKTAEQVAAERAARK 34
Score = 27.5 bits (60), Expect = 6.2
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K K ++K ++ ++ +K
Sbjct: 15 KSKAQQKTAEQVAAERAARKAA 36
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 32.0 bits (72), Expect = 0.15
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
A ++ K++ KK K +KK KK +
Sbjct: 110 AALREIKERIKKTKDEKKAKKAEV 133
Score = 30.4 bits (68), Expect = 0.63
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 348 RNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
R+ + V A++ ++ K++ KK K +KK K
Sbjct: 97 RSEK-PEVRDAAREAALREIKERIKKTKDEKKAK 129
Score = 29.6 bits (66), Expect = 0.93
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
+ ++ K++ KK K +KK KK
Sbjct: 109 EAALREIKERIKKTKDEKKAKK 130
Score = 29.3 bits (65), Expect = 1.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
+ K++ KK K +KK KK + KS
Sbjct: 113 REIKERIKKTKDEKKAKKAEVAKS 136
Score = 28.9 bits (64), Expect = 1.6
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
++ K++ KK K +KK KK
Sbjct: 110 AALREIKERIKKTKDEKKAKKAE 132
Score = 28.9 bits (64), Expect = 1.9
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 348 RNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
L K++ KK K +KK KK + K
Sbjct: 103 VRDAAREAALREIKERIKKTKDEKKAKKAEVAKS 136
Score = 28.5 bits (63), Expect = 2.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
K++ KK K +KK KK + K +
Sbjct: 115 IKERIKKTKDEKKAKKAEVAKSQK 138
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 108
Score = 31.1 bits (70), Expect = 0.17
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K K K K+KKKK S
Sbjct: 7 KAPPPSSKPAKSGGGKQKKKKWS 29
Score = 30.0 bits (67), Expect = 0.39
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K K+KKKK K K+K+K
Sbjct: 14 KPAKSGGGKQKKKKWSKGKQKEK 36
Score = 30.0 bits (67), Expect = 0.48
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
K K K+KKKK K K
Sbjct: 10 PPSSKPAKSGGGKQKKKKWSKGKQ 33
Score = 29.6 bits (66), Expect = 0.55
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
+ K K K+KKKK K K+K
Sbjct: 11 PSSKPAKSGGGKQKKKKWSKGKQK 34
Score = 29.2 bits (65), Expect = 0.68
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
KK K K K K+KK
Sbjct: 3 PKKDKAPPPSSKPAKSGGGKQKK 25
Score = 29.2 bits (65), Expect = 0.78
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
A K K K+KKKK K
Sbjct: 8 APPPSSKPAKSGGGKQKKKKWSK 30
Score = 28.8 bits (64), Expect = 1.2
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K K K+KKKK K
Sbjct: 9 PPPSSKPAKSGGGKQKKKKWSKG 31
Score = 28.0 bits (62), Expect = 1.8
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
+ K K K+KKKK
Sbjct: 6 DKAPPPSSKPAKSGGGKQKKKKWS 29
Score = 27.3 bits (60), Expect = 3.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 358 NAKKKKKKKKKKKKKKKKKK 377
+ K+KKKK K K+K+K
Sbjct: 17 KSGGGKQKKKKWSKGKQKEK 36
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Length = 108
Score = 31.1 bits (70), Expect = 0.19
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K++ K K KK KK
Sbjct: 4 KQQLSKAAKAAAALAGGKKSKK 25
Score = 30.7 bits (69), Expect = 0.21
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
++ K K KK KKK
Sbjct: 5 QQLSKAAKAAAALAGGKKSKKK 26
Score = 30.7 bits (69), Expect = 0.23
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
+ K K KK KKK S
Sbjct: 6 QLSKAAKAAAALAGGKKSKKKWS 28
Score = 30.0 bits (67), Expect = 0.36
Identities = 10/23 (43%), Positives = 10/23 (43%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
AK KK KKK KK K
Sbjct: 11 AKAAAALAGGKKSKKKWSKKSMK 33
Score = 30.0 bits (67), Expect = 0.39
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K++ K K KK K
Sbjct: 2 PPKQQLSKAAKAAAALAGGKKSK 24
Score = 29.6 bits (66), Expect = 0.51
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
A KK KKK KK K +
Sbjct: 13 AAAALAGGKKSKKKWSKKSMKDR 35
Score = 29.6 bits (66), Expect = 0.56
Identities = 8/24 (33%), Positives = 8/24 (33%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
K K KK KKK K
Sbjct: 6 QLSKAAKAAAALAGGKKSKKKWSK 29
Score = 29.2 bits (65), Expect = 0.75
Identities = 8/23 (34%), Positives = 8/23 (34%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K KK KKK KK
Sbjct: 10 AAKAAAALAGGKKSKKKWSKKSM 32
Score = 29.2 bits (65), Expect = 0.82
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
+K K KK KKK KK
Sbjct: 8 SKAAKAAAALAGGKKSKKKWSKK 30
Score = 28.8 bits (64), Expect = 0.98
Identities = 9/22 (40%), Positives = 9/22 (40%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKK 380
A K KK KKK KK
Sbjct: 10 AAKAAAALAGGKKSKKKWSKKS 31
Score = 27.3 bits (60), Expect = 3.3
Identities = 8/23 (34%), Positives = 8/23 (34%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKK 380
KK KKK KK K
Sbjct: 11 AKAAAALAGGKKSKKKWSKKSMK 33
Score = 27.3 bits (60), Expect = 3.4
Identities = 5/22 (22%), Positives = 7/22 (31%)
Query: 361 KKKKKKKKKKKKKKKKKKKKKS 382
K++ K K KK
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSK 24
Score = 26.9 bits (59), Expect = 5.7
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 358 NAKKKKKKKKKKKKKKKKKK 377
KK KKK KK K +
Sbjct: 16 ALAGGKKSKKKWSKKSMKDR 35
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 32.5 bits (73), Expect = 0.20
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 6/82 (7%)
Query: 304 KEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKK 363
K ++ + + N + ++ + ++ + KK +
Sbjct: 316 KNPLKNLRIMLK--LNPYAKTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPR 373
Query: 364 KKKKKK----KKKKKKKKKKKK 381
+KK KK KK KK KK
Sbjct: 374 RKKGKKTVGVKKPKKPVVGKKA 395
Score = 32.5 bits (73), Expect = 0.23
Identities = 9/24 (37%), Positives = 9/24 (37%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
K KK KK KK KK
Sbjct: 383 VKKPKKPVVGKKAAATKKPAADKK 406
Score = 32.5 bits (73), Expect = 0.23
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 355 VTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
V + KK KK KK KK +
Sbjct: 381 VGVKKPKKPVVGKKAAATKKPAADKKPA 408
Score = 30.6 bits (68), Expect = 0.89
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
KK KK KK +KK
Sbjct: 388 KPVVGKKAAATKKPAADKKPAEKK 411
Score = 30.2 bits (67), Expect = 1.0
Identities = 9/23 (39%), Positives = 9/23 (39%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
KK KK KK KK K
Sbjct: 377 GKKTVGVKKPKKPVVGKKAAATK 399
Score = 30.2 bits (67), Expect = 1.2
Identities = 9/35 (25%), Positives = 10/35 (28%)
Query: 348 RNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
+ V KK KK KK KK
Sbjct: 365 KGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATK 399
Score = 29.8 bits (66), Expect = 1.4
Identities = 9/22 (40%), Positives = 9/22 (40%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K KK KK KK KK
Sbjct: 379 KTVGVKKPKKPVVGKKAAATKK 400
Score = 29.8 bits (66), Expect = 1.5
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
KK KK KK KK +
Sbjct: 379 KTVGVKKPKKPVVGKKAAATKKPA 402
Score = 29.5 bits (65), Expect = 1.9
Identities = 14/76 (18%), Positives = 23/76 (30%)
Query: 306 AVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKK 365
+R + R + N + ++ + A P P + + KK
Sbjct: 333 KTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVG 392
Query: 366 KKKKKKKKKKKKKKKK 381
KK KK KK
Sbjct: 393 KKAAATKKPAADKKPA 408
Score = 29.1 bits (64), Expect = 2.6
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K KK KK KK +
Sbjct: 388 KPVVGKKAAATKKPAADKKPAEK 410
Score = 29.1 bits (64), Expect = 2.7
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
KK KK KK +KK
Sbjct: 392 GKKAAATKKPAADKKPAEKKPTTE 415
Score = 29.1 bits (64), Expect = 2.7
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
KK KK KK +K
Sbjct: 389 PVVGKKAAATKKPAADKKPAEKK 411
Score = 29.1 bits (64), Expect = 2.7
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKK 380
A KK KK +KK ++KK
Sbjct: 397 ATKKPAADKKPAEKKPTTEEKK 418
Score = 28.7 bits (63), Expect = 3.4
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
A KK KK +KK ++KK
Sbjct: 396 AATKKPAADKKPAEKKPTTEEKKP 419
Score = 27.9 bits (61), Expect = 6.2
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
A KK KK +KK ++K
Sbjct: 395 AAATKKPAADKKPAEKKPTTEEK 417
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3jyv_L*
1s1h_L* 2zkq_l 3iz6_L
Length = 145
Score = 31.2 bits (70), Expect = 0.23
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKKS 382
L ++ + + KK+ KS
Sbjct: 15 LRVHRRNNRWAENNYKKRLLGTAFKS 40
Score = 29.3 bits (65), Expect = 1.0
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 6/42 (14%)
Query: 341 PQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
P+ R +R H ++ + + KK+ K S
Sbjct: 6 PRGLNSARKLRVH------RRNNRWAENNYKKRLLGTAFKSS 41
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 32.5 bits (73), Expect = 0.23
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKKS 382
A+ K K++ K +K K K
Sbjct: 346 KAAEASKAKRQATLKANRKAAKTHKK 371
Score = 32.1 bits (72), Expect = 0.31
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 345 PVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
P + V+ + K K++ K +K K KK
Sbjct: 335 PAAKIVKEQAKKAAEASKAKRQATLKANRKAAKTHKKG 372
Score = 31.3 bits (70), Expect = 0.55
Identities = 6/37 (16%), Positives = 15/37 (40%)
Query: 346 VTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
+ + + + K++ K +K K KK ++
Sbjct: 339 IVKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQA 375
Score = 30.6 bits (68), Expect = 0.85
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
AK++ K +K K KK +
Sbjct: 353 AKRQATLKANRKAAKTHKKGSQAW 376
Score = 30.6 bits (68), Expect = 0.88
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 348 RNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
+ + + ++ K +K K KK +
Sbjct: 343 QAKKAAEASKAKRQATLKANRKAAKTHKKGSQAW 376
Score = 29.8 bits (66), Expect = 1.6
Identities = 8/35 (22%), Positives = 11/35 (31%)
Query: 347 TRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
+ TL A +K K KK + K
Sbjct: 349 EASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKA 383
Score = 28.6 bits (63), Expect = 3.5
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
+K K KK + K+
Sbjct: 360 KANRKAAKTHKKGSQAWIAAFNKA 383
Score = 28.2 bits (62), Expect = 4.5
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
K +K K KK + +
Sbjct: 356 QATLKANRKAAKTHKKGSQAWIAA 379
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone
H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain,
histone deacetylase; HET: M2L; NMR {Saccharomyces
cerevisiae}
Length = 136
Score = 31.2 bits (69), Expect = 0.26
Identities = 2/25 (8%), Positives = 5/25 (20%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKKK 380
L + K + +
Sbjct: 112 RLANEAGSTGSAPATGGVXKPHRYR 136
Score = 30.1 bits (66), Expect = 0.52
Identities = 2/23 (8%), Positives = 5/23 (21%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
A + K + +
Sbjct: 114 ANEAGSTGSAPATGGVXKPHRYR 136
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_X 2go5_4 2j37_4
Length = 152
Score = 31.4 bits (71), Expect = 0.26
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKK 380
A K KK K ++ K K
Sbjct: 2 APKAAVKKADGKTQQALKVAKA 23
Score = 30.6 bits (69), Expect = 0.41
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKK 380
A KK K ++ K K K
Sbjct: 5 AAVKKADGKTQQALKVAKAVKS 26
Score = 29.8 bits (67), Expect = 0.74
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
KK K ++ K K K
Sbjct: 5 AAVKKADGKTQQALKVAKAVKS 26
Score = 29.8 bits (67), Expect = 0.80
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K KK K ++ K K K
Sbjct: 4 KAAVKKADGKTQQALKVAKAVK 25
Score = 29.1 bits (65), Expect = 1.5
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
++ K K K K+K KK
Sbjct: 13 KTQQALKVAKAVKSGSIKRKSKK 35
Score = 27.1 bits (60), Expect = 5.8
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K ++ K K K K+K K
Sbjct: 12 GKTQQALKVAKAVKSGSIKRKSK 34
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 31.2 bits (70), Expect = 0.26
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 337 VSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
+ R+++ N ++K K K+KKK +K +K +K
Sbjct: 83 TGASLDLIKERRSLKPEVRKANREEKLKANKEKKKAEKAARKAEK 127
Score = 31.2 bits (70), Expect = 0.27
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
K K+KKK +K +K +K K
Sbjct: 107 EKLKANKEKKKAEKAARKAEKAKS 130
Score = 30.1 bits (67), Expect = 0.77
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
K K K+KKK +K +K +K KS
Sbjct: 107 EKLKANKEKKKAEKAARKAEKAKS 130
Score = 30.1 bits (67), Expect = 0.78
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKKS 382
L A K+KKK +K +K +K K
Sbjct: 109 LKANKEKKKAEKAARKAEKAKSAGTQ 134
Score = 29.3 bits (65), Expect = 1.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
+K K K+KKK +K +K +K
Sbjct: 106 EEKLKANKEKKKAEKAARKAEKAK 129
Score = 28.5 bits (63), Expect = 2.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
K+KKK +K +K +K K +S
Sbjct: 112 NKEKKKAEKAARKAEKAKSAGTQS 135
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA
binding, signal recognition particle (SRP), translation
regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1
PDB: 1e8o_A* 1e8s_A 1ry1_C*
Length = 232
Score = 31.5 bits (71), Expect = 0.30
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
++ KK+ KK K KK K + ++K
Sbjct: 110 MDGLKKRDKKNKSKKSKPAQGGEQK 134
Score = 30.4 bits (68), Expect = 0.71
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 350 VRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
+R + L + KK K KK K + ++K
Sbjct: 106 LRANMDGLKKRDKKNKSKKSKPAQGGEQKLIS 137
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 31.6 bits (72), Expect = 0.35
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
++K ++ K K+K +K++ +K+
Sbjct: 318 TEEKMRRAKLAKEKAEKERLEKQ 340
Score = 29.3 bits (66), Expect = 1.8
Identities = 5/22 (22%), Positives = 16/22 (72%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
+++ ++K ++ K K+K +K++
Sbjct: 315 RRETEEKMRRAKLAKEKAEKER 336
Score = 29.3 bits (66), Expect = 2.1
Identities = 5/23 (21%), Positives = 15/23 (65%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
++ ++K ++ K K+K +K++
Sbjct: 315 RRETEEKMRRAKLAKEKAEKERL 337
Score = 29.3 bits (66), Expect = 2.2
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
A K+ +K+++ ++K ++ K K+
Sbjct: 307 QAVKENQKRRETEEKMRRAKLAKEK 331
Score = 28.9 bits (65), Expect = 2.5
Identities = 5/23 (21%), Positives = 15/23 (65%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
+ ++K ++ K K+K +K++ +
Sbjct: 316 RETEEKMRRAKLAKEKAEKERLE 338
Score = 27.4 bits (61), Expect = 8.8
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 358 NAKKKKKKKKKKKKKKKKKK 377
++ K K+K +K++ +K+
Sbjct: 321 KMRRAKLAKEKAEKERLEKQ 340
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 140
Score = 30.7 bits (70), Expect = 0.36
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
AK K ++ + +K
Sbjct: 2 AKPIPKIGSRRNGRISSRKSASA 24
Score = 28.8 bits (65), Expect = 1.3
Identities = 3/23 (13%), Positives = 8/23 (34%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K ++ + +K +K
Sbjct: 4 PIPKIGSRRNGRISSRKSASARK 26
Score = 28.4 bits (64), Expect = 2.3
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
K ++ + +K +K
Sbjct: 5 IPKIGSRRNGRISSRKSASARKIP 28
Score = 26.5 bits (59), Expect = 8.7
Identities = 3/23 (13%), Positives = 8/23 (34%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K ++ + +K +K
Sbjct: 7 KIGSRRNGRISSRKSASARKIPK 29
>2lhj_A High mobility group protein homolog NHP1; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; NMR {Babesia bovis}
Length = 97
Score = 29.7 bits (67), Expect = 0.39
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 359 AKKKKKKKKKKKKKKKK 375
A + ++ +K KK
Sbjct: 2 AGASDRTGVRRPRKAKK 18
Score = 29.7 bits (67), Expect = 0.42
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 355 VTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
+ + + ++ +K KK K+ S
Sbjct: 1 MAGASDRTGVRRPRKAKKDPNAPKRALS 28
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 30.8 bits (69), Expect = 0.44
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
A + K+ KK K+ KK
Sbjct: 107 QAIRAAKEAKKAKQASKKTAMAAA 130
Score = 29.6 bits (66), Expect = 1.0
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
A++++ + K+ KK K+ KK +
Sbjct: 103 AQREQAIRAAKEAKKAKQASKKTA 126
Score = 29.3 bits (65), Expect = 1.2
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
+ K+ KK K+ KK +
Sbjct: 107 QAIRAAKEAKKAKQASKKTAMAAA 130
Score = 29.3 bits (65), Expect = 1.5
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
++ + K+ KK K+ KK
Sbjct: 106 EQAIRAAKEAKKAKQASKKTAM 127
Score = 28.9 bits (64), Expect = 1.6
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
+ K+ KK K+ KK K+
Sbjct: 110 RAAKEAKKAKQASKKTAMAAAKA 132
Score = 28.9 bits (64), Expect = 1.8
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKKS 382
+ A K+ KK K+ KK K +
Sbjct: 109 IRAAKEAKKAKQASKKTAMAAAKAPT 134
Score = 28.5 bits (63), Expect = 2.3
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
++++ + K+ KK K+ KK+
Sbjct: 102 KAQREQAIRAAKEAKKAKQASKKT 125
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.46
Identities = 45/315 (14%), Positives = 87/315 (27%), Gaps = 85/315 (26%)
Query: 102 SLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQ------YPIIMNQ 155
+ + F F W + S ++L + Y I I +
Sbjct: 175 KVQCKMDFKIF----WLNLKNCNSPETVLE---MLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 156 NTV----------------LLMLSNVWILPGII-SFT---PIMLGWYTTPDHKQYRKHHP 195
+++ LL+L NV +F I+L TT
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQN-AKAWNAFNLSCKILL---TTRF--------K 275
Query: 196 NVCIFVVNVYYALISSSISFWIPGFV---MVTML--VVNTVLLMLSN--VWILPGIISFT 248
V F+ I S+ + ++L ++ L + P +S
Sbjct: 276 QVTDFLSAATTTHI--SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 249 PIMLGWYTTPDHKQYRKHHPNVCIFVVNV--YYALISSSISFWIPGFVMVTMYYRIYKEA 306
+ KH VN +I SS++ P Y +++
Sbjct: 334 AESI--RDGLATWDNWKH--------VNCDKLTTIIESSLNVLEP-----AEYRKMFDR- 377
Query: 307 VRQRIALSRTSSNIVSPVIQ-----STSEGSAVVTVSDTPQS----TPVTRNVRTHSVTL 357
+++ S++I + ++ VV S P + S+ L
Sbjct: 378 ----LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 358 NAKKKKKKKKKKKKK 372
K K + + +
Sbjct: 434 ELKVKLENEYALHRS 448
Score = 27.9 bits (61), Expect = 7.1
Identities = 39/235 (16%), Positives = 74/235 (31%), Gaps = 58/235 (24%)
Query: 1 MNNTIYNSLNYTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGML---MCFIIITAIL 57
+ I +SLN F S+FP ++ I P I+ ++ + + ++
Sbjct: 355 LTTIIESSLNV-LEPAEYRKMFDRLSVFPPSAHI-----PTILLSLIWFDVIKSDVMVVV 408
Query: 58 GNLLVIISVI-KHRKLRIITNY--FVVSLAFADLLVAL---CVMPFNAIVS-----LTDE 106
N L S++ K K I+ ++ + AL V +N + L
Sbjct: 409 -NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 107 WYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKP--LQYPIIMNQNTVLLMLSN 164
+ YF S + HL I + + L + + + + S
Sbjct: 468 YLDQYFY-----SHIGH-------HLKNIEHPERMTLFRMVFLDFRFLEQK---IRHDST 512
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKH----HPNVCIFVVNVYYALISSSISF 215
W G S + K Y+ + P Y L+++ + F
Sbjct: 513 AWNASG--SILNTLQ------QLKFYKPYICDNDP--------KYERLVNAILDF 551
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA
recognition, chromatin, DNA binding protein; NMR
{Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A
1lwm_A
Length = 93
Score = 29.6 bits (67), Expect = 0.47
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
++ KK+ +KKK K+
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKR 23
Score = 28.8 bits (65), Expect = 0.89
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
++ KK+ +KKK K+ S
Sbjct: 3 TPREPKKRTTRKKKDPNAPKRALS 26
Score = 28.1 bits (63), Expect = 1.3
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKK 380
++ KK+ +KKK K+
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKR 23
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 31.6 bits (71), Expect = 0.51
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K K K K KK + KKKK K
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKK 23
Score = 30.1 bits (67), Expect = 1.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K K K KK + KKKK KK+
Sbjct: 2 PKNKDKDKKVPEPDNKKKKPKKE 24
Score = 29.3 bits (65), Expect = 2.4
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
A+ + +K+ K++K K K++ +K
Sbjct: 135 FKAQTEARKQMSKEEKLKIKEENEK 159
Score = 28.6 bits (63), Expect = 3.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
K K KK + KKKK KK++
Sbjct: 3 KNKDKDKKVPEPDNKKKKPKKEEE 26
Score = 28.2 bits (62), Expect = 5.3
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 351 RTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
+AK K K K KK + KKK
Sbjct: 486 DARRDLKSAKADAKVMKDAKTKKVVESKKKA 516
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A
{Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Length = 102
Score = 29.4 bits (65), Expect = 0.58
Identities = 4/22 (18%), Positives = 14/22 (63%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKK 379
N +K+++ +K +++ + K +
Sbjct: 81 NLQKQRELQKANQEQYAEGKMR 102
Score = 28.6 bits (63), Expect = 1.1
Identities = 4/30 (13%), Positives = 14/30 (46%)
Query: 351 RTHSVTLNAKKKKKKKKKKKKKKKKKKKKK 380
R +K+++ +K +++ + K +
Sbjct: 73 RVLKYVDTNLQKQRELQKANQEQYAEGKMR 102
Score = 28.2 bits (62), Expect = 1.9
Identities = 3/21 (14%), Positives = 13/21 (61%)
Query: 361 KKKKKKKKKKKKKKKKKKKKK 381
+K+++ +K +++ + K +
Sbjct: 82 LQKQRELQKANQEQYAEGKMR 102
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 30.1 bits (67), Expect = 0.58
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
A ++ K+KK +KK+ +K +
Sbjct: 109 KAVRELKQKKANDIEKKRADRKLQ 132
Score = 29.7 bits (66), Expect = 0.91
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 348 RNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
+N+ A+K ++ K+KK +KK+ +
Sbjct: 96 KNLDASHKKAEAEKAVRELKQKKANDIEKKRADR 129
Score = 29.4 bits (65), Expect = 1.2
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKKS 382
+ K+KK +KK+ +K + K
Sbjct: 111 VRELKQKKANDIEKKRADRKLQGKDV 136
Score = 29.4 bits (65), Expect = 1.4
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
K+KK +KK+ +K + K
Sbjct: 114 LKQKKANDIEKKRADRKLQGKDVK 137
Score = 29.4 bits (65), Expect = 1.4
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
++ K+KK +KK+ +K
Sbjct: 109 KAVRELKQKKANDIEKKRADRKLQ 132
Score = 28.2 bits (62), Expect = 2.6
Identities = 6/47 (12%), Positives = 21/47 (44%)
Query: 335 VTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
+++ + + + + + ++ K+KK +KK+ +K +
Sbjct: 87 ISLEEINRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQG 133
Score = 27.8 bits (61), Expect = 4.2
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K KK + KK K+ K KK
Sbjct: 136 VKAAKKAETKKTKQPVGAKGGKK 158
Score = 27.4 bits (60), Expect = 4.6
Identities = 6/37 (16%), Positives = 16/37 (43%)
Query: 346 VTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
+ + + +K ++ K+KK +KK++
Sbjct: 91 EINRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRA 127
Score = 27.4 bits (60), Expect = 5.4
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKKS 382
L KK +KK+ +K + K K +
Sbjct: 114 LKQKKANDIEKKRADRKLQGKDVKAA 139
Score = 27.4 bits (60), Expect = 5.7
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 351 RTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
+V +KK +KK+ +K + K K+
Sbjct: 107 AEKAVRELKQKKANDIEKKRADRKLQGKDVKA 138
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 161
Score = 30.5 bits (69), Expect = 0.59
Identities = 6/50 (12%), Positives = 16/50 (32%)
Query: 329 SEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKK 378
A + + + AK K +++ + + + +KK
Sbjct: 9 QSAFASSQQLPLLPKFAAAKPLLPSFPIIEAKAKTRREDRTARHVRIRKK 58
Score = 28.9 bits (65), Expect = 1.5
Identities = 8/55 (14%), Positives = 19/55 (34%)
Query: 327 STSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
S S + S P + + + K K +++ + + + +KK
Sbjct: 4 SLSFLQSAFASSQQLPLLPKFAAAKPLLPSFPIIEAKAKTRREDRTARHVRIRKK 58
>2xzm_X RPS30E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_X 3j0o_X 3j0l_X 3j0p_X 3j0q_X
Length = 80
Score = 29.0 bits (64), Expect = 0.64
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 351 RTHSVTLNAKKKKKKKKKKKKKKKKKKKKK 380
R H A K +K+ K +KK K +K K
Sbjct: 3 RMHGTLAKAGKVRKQTPKVEKKDKPRKTPK 32
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 30.2 bits (67), Expect = 0.82
Identities = 4/30 (13%), Positives = 15/30 (50%)
Query: 351 RTHSVTLNAKKKKKKKKKKKKKKKKKKKKK 380
R +K+K ++ K+ ++++ + +
Sbjct: 130 RRFFENTQDVRKRKTREAAKRNRRRRPQAR 159
Score = 28.7 bits (63), Expect = 2.2
Identities = 3/21 (14%), Positives = 14/21 (66%)
Query: 361 KKKKKKKKKKKKKKKKKKKKK 381
+K+K ++ K+ ++++ + +
Sbjct: 139 VRKRKTREAAKRNRRRRPQAR 159
Score = 28.7 bits (63), Expect = 2.6
Identities = 3/20 (15%), Positives = 14/20 (70%)
Query: 363 KKKKKKKKKKKKKKKKKKKS 382
+K+K ++ K+ ++++ ++
Sbjct: 139 VRKRKTREAAKRNRRRRPQA 158
>1kvn_A SRP19; RNA binding protein; NMR {Archaeoglobus fulgidus} SCOP:
d.201.1.1 PDB: 1kvv_A
Length = 104
Score = 29.0 bits (65), Expect = 0.93
Identities = 11/23 (47%), Positives = 19/23 (82%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
A+K + +++K+++KK KKKKKK
Sbjct: 82 ARKIAEIREQKREQKKDKKKKKK 104
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 29.7 bits (67), Expect = 0.93
Identities = 3/23 (13%), Positives = 10/23 (43%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
++ K +++ +KK +
Sbjct: 133 VVAREMKIVTERRAEKKADSRVT 155
Score = 28.1 bits (63), Expect = 3.3
Identities = 4/25 (16%), Positives = 11/25 (44%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
A ++ K +++ +KK +
Sbjct: 130 AASVVAREMKIVTERRAEKKADSRV 154
Score = 28.1 bits (63), Expect = 3.6
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKK 380
K +++ +KK + K
Sbjct: 136 REMKIVTERRAEKKADSRVTYSK 158
Score = 27.7 bits (62), Expect = 4.3
Identities = 3/21 (14%), Positives = 9/21 (42%)
Query: 357 LNAKKKKKKKKKKKKKKKKKK 377
+ +++ +KK + K
Sbjct: 138 MKIVTERRAEKKADSRVTYSK 158
Score = 27.3 bits (61), Expect = 5.1
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 362 KKKKKKKKKKKKKKKKKKKK 381
K +++ +KK + K
Sbjct: 139 KIVTERRAEKKADSRVTYSK 158
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 145
Score = 29.6 bits (66), Expect = 0.95
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 349 NVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
V + L+ +KK ++K K ++ K+K K
Sbjct: 103 KVVITRLKLDKDRKKILERKAKSRQVGKEKGKY 135
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 30.6 bits (69), Expect = 0.98
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 351 RTHSVTL--NAKKKKKKKKKKKKKKKKKKKKKK 381
R +TL K+ ++K + KK+ K +
Sbjct: 623 RI--ITLKDTWGKQGGGTQQKAEGKKRPSTKGR 653
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 30.4 bits (68), Expect = 0.99
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
+KK K++ + KK ++ K
Sbjct: 255 PTEKKFTKEQYAAESKKYRQTK 276
Score = 29.3 bits (65), Expect = 2.2
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K +KK K++ + KK ++
Sbjct: 254 KPTEKKFTKEQYAAESKKYRQT 275
Score = 28.5 bits (63), Expect = 3.1
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
+KK K++ + KK ++ K S
Sbjct: 256 TEKKFTKEQYAAESKKYRQTKLS 278
Score = 28.1 bits (62), Expect = 5.4
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 359 AKKKKKKKKKKKKKKKKKKKK 379
+KK K++ + KK ++ K
Sbjct: 256 TEKKFTKEQYAAESKKYRQTK 276
Score = 27.8 bits (61), Expect = 5.5
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
A K +KK K++ + KK ++
Sbjct: 252 AFKPTEKKFTKEQYAAESKKYRQ 274
Score = 27.8 bits (61), Expect = 5.7
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
+ K +KK K++ + KK +
Sbjct: 250 DPAFKPTEKKFTKEQYAAESKKYR 273
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 30.4 bits (68), Expect = 0.99
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 359 AKKKKKKKKKKKKKKKKKKK 378
K KK+ K+ KK
Sbjct: 252 TMAKSTKKEPATHKRYNLKK 271
Score = 30.0 bits (67), Expect = 1.2
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKK 379
+ K KK+ K+ KK
Sbjct: 250 DPTMAKSTKKEPATHKRYNLKK 271
Score = 30.0 bits (67), Expect = 1.2
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 362 KKKKKKKKKKKKKKKKKKKKS 382
K KK+ K+ KK +
Sbjct: 253 MAKSTKKEPATHKRYNLKKLT 273
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group,
transcription, LSP1, mitochon transcription-DNA complex;
HET: DNA; 2.50A {Homo sapiens}
Length = 238
Score = 30.2 bits (67), Expect = 1.1
Identities = 3/24 (12%), Positives = 6/24 (25%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
A ++ + KK
Sbjct: 21 MASMTGGQQMGRGSSSVLASCPKK 44
Score = 29.4 bits (65), Expect = 1.5
Identities = 3/30 (10%), Positives = 7/30 (23%)
Query: 352 THSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
HS L + ++ +
Sbjct: 9 HHSSGLVPRGSHMASMTGGQQMGRGSSSVL 38
Score = 29.4 bits (65), Expect = 1.9
Identities = 2/28 (7%), Positives = 7/28 (25%)
Query: 353 HSVTLNAKKKKKKKKKKKKKKKKKKKKK 380
+ + ++ + KK
Sbjct: 17 RGSHMASMTGGQQMGRGSSSVLASCPKK 44
Score = 29.0 bits (64), Expect = 2.4
Identities = 3/25 (12%), Positives = 7/25 (28%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
+ ++ + KK S
Sbjct: 23 SMTGGQQMGRGSSSVLASCPKKPVS 47
Score = 29.0 bits (64), Expect = 2.5
Identities = 1/33 (3%), Positives = 7/33 (21%)
Query: 349 NVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
+ H + + ++ +
Sbjct: 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGSSSV 37
Score = 29.0 bits (64), Expect = 2.5
Identities = 1/24 (4%), Positives = 5/24 (20%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
+ ++ + K
Sbjct: 20 HMASMTGGQQMGRGSSSVLASCPK 43
Score = 28.3 bits (62), Expect = 3.7
Identities = 4/41 (9%), Positives = 8/41 (19%)
Query: 338 SDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKK 378
S R + ++ + KK
Sbjct: 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGSSSVLASCPKK 44
Score = 28.3 bits (62), Expect = 4.1
Identities = 7/39 (17%), Positives = 10/39 (25%)
Query: 337 VSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKK 375
S V R S+T + + KK
Sbjct: 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSSSVLASCPKK 44
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_M 4a1c_M 4a1e_M
Length = 301
Score = 30.0 bits (67), Expect = 1.1
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
+ K KK K K+ KK K
Sbjct: 259 ERVKSTKKNDKPKRDHKKFYPTK 281
Score = 29.7 bits (66), Expect = 1.4
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K KK K K+ KK K +
Sbjct: 261 VKSTKKNDKPKRDHKKFYPTKLT 283
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 30.0 bits (67), Expect = 1.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 363 KKKKKKKKKKKKKKKKKKKS 382
+KK KK+ KKK+ + K S
Sbjct: 253 YEKKPKKEVKKKRWNRPKMS 272
Score = 29.6 bits (66), Expect = 1.5
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 359 AKKKKKKKKKKKKKKKKKK 377
+KK KK+ KKK+ + K
Sbjct: 252 VYEKKPKKEVKKKRWNRPK 270
Score = 29.6 bits (66), Expect = 1.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 358 NAKKKKKKKKKKKKKKKKKKK 378
N +KK KK+ KKK+ + K
Sbjct: 250 NPVYEKKPKKEVKKKRWNRPK 270
Score = 29.2 bits (65), Expect = 2.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 362 KKKKKKKKKKKKKKKKKK 379
+KK KK+ KKK+ + K
Sbjct: 253 YEKKPKKEVKKKRWNRPK 270
Score = 28.5 bits (63), Expect = 3.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K KK+ KKK+ + K +KK
Sbjct: 255 KKPKKEVKKKRWNRPKMSLAQKK 277
Score = 28.5 bits (63), Expect = 3.8
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 10/33 (30%)
Query: 360 KKKKKKKKKKKKKKKKK----------KKKKKS 382
+KK KK+ KKK+ + K +KK S
Sbjct: 254 EKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKAS 286
Score = 28.1 bits (62), Expect = 5.2
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 349 NVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
+R + V KK+ KKK+ + K +KK
Sbjct: 246 AIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKD 278
Score = 28.1 bits (62), Expect = 5.2
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
Query: 359 AKKKKKKKKKKKKK-----KKKKKKKKK 381
KK+ KKK+ + K KK + +KK
Sbjct: 257 PKKEVKKKRWNRPKMSLAQKKDRVAQKK 284
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_G
Length = 113
Score = 28.8 bits (64), Expect = 1.3
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKKS 382
L + + K K+ K K
Sbjct: 3 LTKEAAAVAEGKSKQDASPKPYAVKY 28
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 29.2 bits (66), Expect = 1.4
Identities = 5/22 (22%), Positives = 15/22 (68%)
Query: 361 KKKKKKKKKKKKKKKKKKKKKS 382
+ ++ K+K +++ +K+K+S
Sbjct: 171 RLRRDSKEKNERRLAYQKRKES 192
>2qas_A SSPB, hypothetical protein; SSPB, adaptor, CLPX, unknown function,
hydrolase activator; 2.55A {Caulobacter vibrioides} PDB:
2qaz_A
Length = 157
Score = 29.1 bits (65), Expect = 1.4
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 63 IISVIKHR--KLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTD 105
+ V++H+ L +F V+L F +P+ A+ D
Sbjct: 72 MTIVLQHQYWDLAPGETFFSVTLKFGGQ-PKRLSVPYAALTRFYD 115
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R
1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R*
1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U*
1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Length = 88
Score = 28.1 bits (63), Expect = 1.5
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 359 AKKKKKKKKKKKKKKKKKKK 378
+ K K KK+ +++ +K K
Sbjct: 2 STKNAKPKKEAQRRPSRKAK 21
Score = 27.3 bits (61), Expect = 2.7
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 360 KKKKKKKKKKKKKKKKKKKK 379
K K KK+ +++ +K K
Sbjct: 2 STKNAKPKKEAQRRPSRKAK 21
Score = 27.3 bits (61), Expect = 2.7
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 361 KKKKKKKKKKKKKKKKKKKK 380
K K KK+ +++ +K K
Sbjct: 2 STKNAKPKKEAQRRPSRKAK 21
Score = 27.3 bits (61), Expect = 2.7
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 362 KKKKKKKKKKKKKKKKKKKK 381
K K KK+ +++ +K K
Sbjct: 2 STKNAKPKKEAQRRPSRKAK 21
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 29.5 bits (66), Expect = 1.7
Identities = 5/35 (14%), Positives = 8/35 (22%)
Query: 347 TRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
N R + K K+ +K
Sbjct: 2 ASNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
>4a17_P RPL21, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_P 4a1c_P 4a1e_P
Length = 157
Score = 28.8 bits (64), Expect = 1.7
Identities = 13/103 (12%), Positives = 28/103 (27%), Gaps = 14/103 (13%)
Query: 292 GFVMVTMYYRIYKE----------AVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTP 341
G V ++ Y YK + + + + +V
Sbjct: 23 GHVRISRYLTTYKVGEYVDIMVDGSQHKGMPYKLYHGRTGKVFNVNPRSIGVIVHRIVNG 82
Query: 342 QSTPVTRNVRT----HSVTLNAKKKKKKKKKKKKKKKKKKKKK 380
+ +V+ S A K+ + + K + K K+
Sbjct: 83 RYIEKRLHVKIEHVRPSNVKTALSKRYQANDQAKAEGNKAGKR 125
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_D
Length = 405
Score = 29.8 bits (66), Expect = 1.7
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 345 PVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
P R + A + K +K+K K+ K ++ +
Sbjct: 335 PYFGTARKMATLAEAARIKARKEKLDSKRTKLSPEEAA 372
Score = 28.3 bits (62), Expect = 5.0
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 345 PVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKK 380
R + T + K +K+K K+ K ++ K
Sbjct: 338 GTARKMATLAEAARIKARKEKLDSKRTKLSPEEAAK 373
Score = 27.5 bits (60), Expect = 7.4
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
+ A+K+K K+ K ++ K K
Sbjct: 352 IKARKEKLDSKRTKLSPEEAAKVKA 376
>4a18_L RPL34; ribosome, eukaryotic initiation factor 6, EIF6, transla
large ribosomal subunit, rRNA; 3.52A {Tetrahymena
thermophila} PDB: 4a19_L 4a1b_L 4a1d_L 4adx_4
Length = 123
Score = 28.5 bits (63), Expect = 1.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 360 KKKKKKKKKKKKKKKKKKKK 379
K+K K K KKKK+ +KK
Sbjct: 104 KRKMISKPKTDKKKKRSQKK 123
Score = 28.5 bits (63), Expect = 1.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 361 KKKKKKKKKKKKKKKKKKKK 380
K+K K K KKKK+ +KK
Sbjct: 104 KRKMISKPKTDKKKKRSQKK 123
Score = 28.5 bits (63), Expect = 1.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 362 KKKKKKKKKKKKKKKKKKKK 381
K+K K K KKKK+ +KK
Sbjct: 104 KRKMISKPKTDKKKKRSQKK 123
Score = 26.9 bits (59), Expect = 6.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K K+K K K KKKK+ +K
Sbjct: 100 VKIVKRKMISKPKTDKKKKRSQK 122
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system;
3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 229
Score = 29.2 bits (66), Expect = 1.7
Identities = 13/96 (13%), Positives = 20/96 (20%), Gaps = 32/96 (33%)
Query: 282 ISSSISFWI---PGFVMVTMYYR--IYKEAVRQRIALSR-TSSNIVSPVIQS-TSEGSAV 334
I + W G M +Y IY + + N+ I + +
Sbjct: 30 IGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGS 89
Query: 335 -------------------------VTVSDTPQSTP 345
VTV Q
Sbjct: 90 YYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHT 125
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast,
protein binding; NMR {Saccharomyces cerevisiae} PDB:
2jmj_A*
Length = 90
Score = 27.8 bits (61), Expect = 1.8
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 360 KKKKKKKKKKKKKKKKK 376
K+ ++ K K++K++K
Sbjct: 74 KEIANQRSKSKRQKRRK 90
Score = 27.8 bits (61), Expect = 1.8
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 361 KKKKKKKKKKKKKKKKK 377
K+ ++ K K++K++K
Sbjct: 74 KEIANQRSKSKRQKRRK 90
Score = 27.8 bits (61), Expect = 1.8
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 362 KKKKKKKKKKKKKKKKK 378
K+ ++ K K++K++K
Sbjct: 74 KEIANQRSKSKRQKRRK 90
Score = 27.8 bits (61), Expect = 1.8
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 363 KKKKKKKKKKKKKKKKK 379
K+ ++ K K++K++K
Sbjct: 74 KEIANQRSKSKRQKRRK 90
Score = 27.8 bits (61), Expect = 1.8
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 364 KKKKKKKKKKKKKKKKK 380
K+ ++ K K++K++K
Sbjct: 74 KEIANQRSKSKRQKRRK 90
Score = 27.8 bits (61), Expect = 1.8
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 365 KKKKKKKKKKKKKKKKK 381
K+ ++ K K++K++K
Sbjct: 74 KEIANQRSKSKRQKRRK 90
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 203
Score = 29.2 bits (65), Expect = 1.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKKKK 381
TL K+K+K K +KKK+ + +K+
Sbjct: 155 TLEEKRKEKAKIHYRKKKQLMRLRKQ 180
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 29.5 bits (66), Expect = 1.9
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
+ K KKK K K K+ K
Sbjct: 356 EPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 29.5 bits (66), Expect = 2.0
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 344 TPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKK 380
VT ++ + K KKK K K K+ K
Sbjct: 343 FKVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 27.6 bits (61), Expect = 8.9
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
+ + K KKK K K K+
Sbjct: 354 RKEPEPKGSTKKKAKTGAAGKFKRG 378
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_4
Length = 265
Score = 29.4 bits (65), Expect = 2.0
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
N K KK KK+ +K
Sbjct: 6 NPGLKAGGGKKGAKKRTIDPLSRK 29
Score = 27.9 bits (61), Expect = 5.9
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 360 KKKKKKKKKKKKKKKKKKKKK 380
K KK KK+ +K+
Sbjct: 10 KAGGGKKGAKKRTIDPLSRKE 30
Score = 27.5 bits (60), Expect = 6.7
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 4/26 (15%)
Query: 360 KKKKKKKKKKKKKKKKKK----KKKK 381
K K KK KK+ +K+
Sbjct: 5 KNPGLKAGGGKKGAKKRTIDPLSRKE 30
Score = 27.1 bits (59), Expect = 9.0
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 359 AKKKKKKKKKKKKKKKKKKKK 379
KK KK+ +K+
Sbjct: 10 KAGGGKKGAKKRTIDPLSRKE 30
>3izc_K 60S ribosomal protein RPL16 (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_K
3o58_P 3o5h_P 3u5e_O 3u5i_O
Length = 199
Score = 28.8 bits (64), Expect = 2.2
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKKKK 381
L AK+K + KK+ KK
Sbjct: 155 KLEAKRKVSSAEYYAKKRAFTKKVAS 180
>2qsf_A RAD4, DNA repair protein RAD4; alpha-beta structure, beta hairpin,
transglutaminase fold, DNA-damage recognition, DNA
repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB:
2qsg_A* 2qsh_A*
Length = 533
Score = 29.1 bits (64), Expect = 2.5
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 354 SVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
SV + K+ ++ + +++K
Sbjct: 12 SVEIKPSSKRNSDARRTSRNVCSNEERK 39
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_G
Length = 219
Score = 28.8 bits (64), Expect = 2.5
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
A K K K +K + K
Sbjct: 27 AIKAKHGGALPKAEKPAAIAEPK 49
Score = 28.1 bits (62), Expect = 4.1
Identities = 5/37 (13%), Positives = 13/37 (35%)
Query: 346 VTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
+ ++ S + ++ K K K +K +
Sbjct: 7 MALGIKRASRSHTYHRRGLWAIKAKHGGALPKAEKPA 43
Score = 28.1 bits (62), Expect = 4.4
Identities = 4/23 (17%), Positives = 6/23 (26%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K K K +K +
Sbjct: 26 WAIKAKHGGALPKAEKPAAIAEP 48
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor
60S, translation, large ribosomal subunit; 3.52A
{Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A
Length = 264
Score = 28.7 bits (65), Expect = 2.6
Identities = 6/38 (15%), Positives = 15/38 (39%), Gaps = 6/38 (15%)
Query: 351 RTHSVTLNAKKKKKKKKKKKKK------KKKKKKKKKS 382
+V+ A +K + ++ +K+K K+
Sbjct: 222 HPATVSKWASAGQKVGLRAARRTGLVRGGQKEKMAMKA 259
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_I 4a1c_I 4a1e_I
Length = 198
Score = 28.4 bits (63), Expect = 2.8
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKKKK 381
L K++ + K KK K+ +KK
Sbjct: 154 KLEEKRRARAKTYHDKKVKQADARKK 179
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_K
Length = 206
Score = 28.4 bits (63), Expect = 2.9
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKKKK 381
L K+K+K K ++K+ K + K
Sbjct: 160 ELEEKRKEKAKVSYDRRKQLAKLRVK 185
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 28.4 bits (63), Expect = 3.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K +++ +KKK +KK KK+K
Sbjct: 158 PKPEEEVAQKKKISQKKLKKQK 179
Score = 28.0 bits (62), Expect = 3.9
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 355 VTLNAKKKKKKKKKKKKKKKKKKKKKK 381
+ L K++ K +++ +KKK +KK
Sbjct: 148 MILTEKEQIVPKPEEEVAQKKKISQKK 174
Score = 27.6 bits (61), Expect = 6.1
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K +++ +KKK +KK KK+K
Sbjct: 159 KPEEEVAQKKKISQKKLKKQKL 180
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_S 4a1c_S 4a1e_S
Length = 135
Score = 27.7 bits (61), Expect = 3.1
Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 330 EGSAVVTVSDTPQSTPV-TRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
E + ++ P P+ + L K ++ +K K K +K +
Sbjct: 82 EKISKNKLNGAPYQIPLSASQLVL--TKLKLDKSRQSLLTRKAASLKTKGQKHT 133
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 257
Score = 28.6 bits (64), Expect = 3.4
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 354 SVTLNAKKKKKKKKKKKKKKKKKKKK 379
S+ + +KK K K + ++
Sbjct: 216 SLIVLPGRKKWVKPSVAKNLARAEEY 241
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics,
protein initiative; 2.04A {Lactobacillus salivarius}
Length = 177
Score = 28.0 bits (63), Expect = 3.5
Identities = 3/24 (12%), Positives = 7/24 (29%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
+K + + K+ K
Sbjct: 118 KGVTLAEKLANRYSHDSYRNKQNK 141
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 28.7 bits (63), Expect = 3.5
Identities = 29/223 (13%), Positives = 63/223 (28%), Gaps = 39/223 (17%)
Query: 188 KQYRKHHPNVCIFVVNVYYALISSSIS----FWIPGFVMV--TMLVVNTVLLMLSNVWIL 241
K Y K H + + I+ ++ F + +
Sbjct: 225 KWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMK----- 279
Query: 242 PG--IISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMY 299
G I+S P + + ++ ++ + V + + S+S W V ++
Sbjct: 280 EGGRIVSSKPFA-----PLNFRINSRNLSDIGTIMRVVELSPLKGSVS-WTGKPVSYYLH 333
Query: 300 -----------YRIYKEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTR 348
+ +R+ +R S +T V+ + +
Sbjct: 334 TIDRTILENYFSSLKNPKLREEQEAARRRQQRESKSNAATPTKGPEGKVAGPADAPMDSG 393
Query: 349 NVRTHSVTLNAKKKKKKKKKKKK---------KKKKKKKKKKS 382
+ KK K +KKK +K+ + KK +
Sbjct: 394 AEEEKAGAATVKKPSPSKARKKKLNKKGRKMAGRKRGRPKKMN 436
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function,
zinc finger, metal-binding protein, structural genomics;
NMR {Mus musculus} SCOP: g.41.3.4
Length = 85
Score = 26.9 bits (59), Expect = 3.6
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 360 KKKKKKKKKKKKKKKKKK 377
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 26.9 bits (59), Expect = 3.6
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 361 KKKKKKKKKKKKKKKKKK 378
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 26.9 bits (59), Expect = 3.6
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 362 KKKKKKKKKKKKKKKKKK 379
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 26.9 bits (59), Expect = 3.6
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 363 KKKKKKKKKKKKKKKKKK 380
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 26.9 bits (59), Expect = 3.6
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 364 KKKKKKKKKKKKKKKKKK 381
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_M
Length = 178
Score = 27.8 bits (62), Expect = 4.1
Identities = 1/26 (3%), Positives = 1/26 (3%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKKKK 381
A
Sbjct: 149 AAAAAAAAAAAAAAAAAAAAAAAAAA 174
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 28.2 bits (63), Expect = 4.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKKS 382
L + +K +KKKKKK K + S
Sbjct: 365 LQSSASRKTQKKKKKKASKTAENATS 390
Score = 28.2 bits (63), Expect = 5.1
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKKKKS 382
L +K +KKKKKK K + +
Sbjct: 363 ALLQSSASRKTQKKKKKKASKTAENAT 389
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 27.9 bits (62), Expect = 4.5
Identities = 6/25 (24%), Positives = 17/25 (68%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
+K++KK+ ++KK+ + +++K
Sbjct: 101 FQLQKEQKKQLTSQEKKQIRLEREK 125
>3iz5_W 60S ribosomal protein L22 (L22E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_W
Length = 130
Score = 27.2 bits (60), Expect = 4.8
Identities = 5/21 (23%), Positives = 6/21 (28%)
Query: 359 AKKKKKKKKKKKKKKKKKKKK 379
A+ K KKK
Sbjct: 2 ARGVAVAAKGGAGGKKKGSVS 22
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 27.7 bits (62), Expect = 4.8
Identities = 4/22 (18%), Positives = 12/22 (54%)
Query: 355 VTLNAKKKKKKKKKKKKKKKKK 376
V L ++K+ +++K ++
Sbjct: 177 VVLQPPRRKEVPRRRKNHRRSG 198
Score = 27.3 bits (61), Expect = 7.2
Identities = 4/34 (11%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 348 RNVRT--HSVTLNAKKKKKKKKKKKKKKKKKKKK 379
+NV+ + + ++K+ +++K ++
Sbjct: 165 QNVKAVFDTAIKVVLQPPRRKEVPRRRKNHRRSG 198
>2nys_A AGR_C_3712P; SSPB, stringent starvation protein B, NESG, ATR88,
structural genomics, PSI-2, protein structure
initiative; 2.70A {Agrobacterium tumefaciens str} SCOP:
b.136.1.2
Length = 176
Score = 27.6 bits (61), Expect = 5.0
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 63 IISVIKH--RKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTD 105
+ VI+H +++ F + L+F+D V+P+NAI D
Sbjct: 64 MTIVIQHQFWDMKVTETGFEIGLSFSDT-PEKLVIPYNAIRGFYD 107
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 27.0 bits (60), Expect = 5.2
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 3/34 (8%)
Query: 327 STSEGSAVVTVSDTP---QSTPVTRNVRTHSVTL 357
+S T D P V + +HS +
Sbjct: 4 GSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKI 37
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing
protein 2, S-adenos methionine, structural genomics,
structural genomics consor SGC; HET: SAM; 1.99A {Homo
sapiens}
Length = 278
Score = 27.8 bits (62), Expect = 5.4
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKKK 379
L + + + K KK++ +K
Sbjct: 255 YLGGENRVSIRAAGGKMKKERSRK 278
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 27.6 bits (61), Expect = 5.6
Identities = 4/27 (14%), Positives = 13/27 (48%)
Query: 355 VTLNAKKKKKKKKKKKKKKKKKKKKKK 381
+ + K++ K +KK + +++
Sbjct: 148 LVVTEKEEAVAKAAEKKVVRLTSRQRG 174
Score = 26.8 bits (59), Expect = 9.4
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K +KK + +++ + +K
Sbjct: 159 KAAEKKVVRLTSRQRGRIAAQK 180
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 28.1 bits (63), Expect = 5.9
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
A +++ KK+KK+ + KKK +
Sbjct: 474 APIEQEPSKKQKKQHEGSKKKAAA 497
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 28.1 bits (62), Expect = 6.2
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
+++KK + K++KK K+K+
Sbjct: 111 HLVQREKKLSRTKEEKKAIKEKQDA 135
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation,
vacuolar type, hydrolase, ATP synthesis, ATP-binding,
hydrogen ION transport; HET: ADP; 4.51A {Thermus
thermophilus} PDB: 3a5d_G 3j0j_G*
Length = 223
Score = 27.5 bits (60), Expect = 6.3
Identities = 3/22 (13%), Positives = 12/22 (54%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K+ K K + ++ +++ + +
Sbjct: 195 KRIKGKIEAREAEEEGGRPNPQ 216
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 27.1 bits (61), Expect = 6.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K+KK +K+ K+ +KK+K K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHH 177
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 28.0 bits (63), Expect = 6.8
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K KK K K K KK+
Sbjct: 450 KNTTSVKKAKGKNPKNTTSVKKA 472
Score = 27.6 bits (62), Expect = 7.4
Identities = 7/23 (30%), Positives = 7/23 (30%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
K KK K K K K
Sbjct: 448 LPKNTTSVKKAKGKNPKNTTSVK 470
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 138
Score = 26.9 bits (59), Expect = 7.0
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 353 HSVTLNAKKKKKKKKKKKKKKKKKKKKK 380
+ + N K +K +K+ K++K + KK
Sbjct: 95 YRLIRNGLATKVEKSRKQMKERKNRAKK 122
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 27.9 bits (62), Expect = 7.0
Identities = 5/24 (20%), Positives = 17/24 (70%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
AK++ + +KKK++++++ + +
Sbjct: 391 AKQENENMRKKKEEEERRARMEAQ 414
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A;
translation, ribosome, ribosomal R ribosomal protein,
STM1, eukaryotic ribosome; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5i_g 3izc_i 3izs_i
Length = 121
Score = 26.6 bits (58), Expect = 7.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 360 KKKKKKKKKKKKKKKKKKKK 379
KK K++ + KK +KK KK
Sbjct: 102 KKVVKEQTEAAKKSEKKAKK 121
Score = 26.6 bits (58), Expect = 7.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 361 KKKKKKKKKKKKKKKKKKKK 380
KK K++ + KK +KK KK
Sbjct: 102 KKVVKEQTEAAKKSEKKAKK 121
Score = 26.6 bits (58), Expect = 7.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 362 KKKKKKKKKKKKKKKKKKKK 381
KK K++ + KK +KK KK
Sbjct: 102 KKVVKEQTEAAKKSEKKAKK 121
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Length = 135
Score = 26.8 bits (59), Expect = 7.7
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K + KK K+ KK ++ +
Sbjct: 112 KNRDKKIFGTGKRLAKKVARRNA 134
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding,
rRNA-binding, metal-binding, zinc-finger, translation;
HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP:
a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M
1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P*
1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M*
1xmq_M* ...
Length = 126
Score = 26.7 bits (60), Expect = 7.7
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 345 PVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKK 378
PV R RT + NA+ +K +K KKK +K
Sbjct: 97 PV-RGQRTRT---NARTRKGPRKTVAGKKKAPRK 126
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 156
Score = 26.8 bits (59), Expect = 8.4
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
AKK+ K + K K K KK
Sbjct: 5 AKKEAPAPPKAEAKAKALKAKKA 27
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A
{Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B*
1ux4_A
Length = 411
Score = 27.2 bits (60), Expect = 9.2
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K ++ K K+K+ +K +
Sbjct: 48 KAFAAREIKSLASKRKEDLQKIT 70
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.137 0.426
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,862,981
Number of extensions: 352463
Number of successful extensions: 4582
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3829
Number of HSP's successfully gapped: 401
Length of query: 382
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 287
Effective length of database: 4,049,298
Effective search space: 1162148526
Effective search space used: 1162148526
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.6 bits)