RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16861
(382 letters)
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Length = 348
Score = 78.1 bits (191), Expect = 1e-16
Identities = 40/289 (13%), Positives = 90/289 (31%), Gaps = 22/289 (7%)
Query: 13 YNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKL 72
+ + +++ S F + F + M +I+ N L + ++H+KL
Sbjct: 9 FYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKL 68
Query: 73 RIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHL 132
R NY +++LA ADL + SL + FG C++ F ++ L
Sbjct: 69 RTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSL 128
Query: 133 CCISVDRYYAIVKPLQYPIIMNQNTV-LLMLSNVWILPGIISFTPIMLGWYTTPDHKQYR 191
++++RY + KP+ + + + + V L +
Sbjct: 129 VVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCG 188
Query: 192 KHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMLVVNTVLLMLSNVWILPGIISFTPIM 251
+ N + + + F IP V+ + ++
Sbjct: 189 IDYYTPHEETNNESFVIYMFVVHFIIPLIVI---------------------FFCYGQLV 227
Query: 252 LGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMYY 300
+Q V + ++ + + W+P + +
Sbjct: 228 FTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIF 276
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 29.9 bits (67), Expect = 0.11
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 361 KKKKKKKKKKKKKKKKKKKKKS 382
++ KK+ +KKK K+ S
Sbjct: 5 REPKKRTTRKKKDPNAPKRALS 26
Score = 29.1 bits (65), Expect = 0.22
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
++ KK+ +KKK K+
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKR 23
Score = 29.1 bits (65), Expect = 0.23
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKK 380
++ KK+ +KKK K+
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKR 23
Score = 27.6 bits (61), Expect = 0.74
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 355 VTLNAKKKKKKKKKKKKKKKKK 376
VT KK+ +KKK K+
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKR 23
>d1wvka_ g.82.1.1 (A:) Expressed protein At2g23090/F21P24.15 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 86
Score = 29.4 bits (66), Expect = 0.16
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 353 HSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
H + +K + K +K K K S
Sbjct: 6 HHLEGGGNAQKSAMARAKNLEKAKAAGKGS 35
>d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus
thermophilus [TaxId: 274]}
Length = 125
Score = 30.2 bits (68), Expect = 0.16
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 345 PVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKK 378
PV R RT + NA+ +K +K KKK +K
Sbjct: 96 PV-RGQRTRT---NARTRKGPRKTVAGKKKAPRK 125
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 31.1 bits (70), Expect = 0.21
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
N K+++ ++K ++ K K+K +K+
Sbjct: 307 NQKRRETEEKMRRAKLAKEKAEKE 330
Score = 29.2 bits (65), Expect = 0.80
Identities = 5/23 (21%), Positives = 16/23 (69%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
+++ ++K ++ K K+K +K++
Sbjct: 309 KRRETEEKMRRAKLAKEKAEKER 331
Score = 28.0 bits (62), Expect = 1.7
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
A K+ +K+++ ++K ++ K K+
Sbjct: 303 AVKENQKRRETEEKMRRAKLAKE 325
Score = 27.6 bits (61), Expect = 2.3
Identities = 6/23 (26%), Positives = 17/23 (73%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K+ +K+++ ++K ++ K K+K+
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKA 327
Score = 26.5 bits (58), Expect = 5.7
Identities = 5/23 (21%), Positives = 15/23 (65%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
+K+++ ++K ++ K K+K +
Sbjct: 307 NQKRRETEEKMRRAKLAKEKAEK 329
Score = 26.5 bits (58), Expect = 6.4
Identities = 5/23 (21%), Positives = 15/23 (65%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
+ +K+++ ++K ++ K K+K
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKA 327
Score = 25.7 bits (56), Expect = 9.7
Identities = 4/23 (17%), Positives = 15/23 (65%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
+ K+ +K+++ ++K ++ K +
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLA 323
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I,
dispensable insert domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 72
Score = 28.6 bits (64), Expect = 0.22
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
AK K K K KK + KKK
Sbjct: 28 AKADAKVMKDAKTKKVVESKKKA 50
>d1kvva_ d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 104
Score = 29.3 bits (66), Expect = 0.23
Identities = 11/23 (47%), Positives = 19/23 (82%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
A+K + +++K+++KK KKKKKK
Sbjct: 82 ARKIAEIREQKREQKKDKKKKKK 104
Score = 25.1 bits (55), Expect = 7.2
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 356 TLNAKKKKKKKKKKKKKKKKK 376
+ +++K+++KK KKKKKK
Sbjct: 84 KIAEIREQKREQKKDKKKKKK 104
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 30.7 bits (69), Expect = 0.28
Identities = 8/41 (19%), Positives = 22/41 (53%)
Query: 337 VSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKK 377
+ D + ++ H+VT++ + +K++ K K+ + +K
Sbjct: 196 IYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEK 236
Score = 28.1 bits (62), Expect = 1.6
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
N + +K++ K K+ + +K
Sbjct: 213 NVTVDLEMRKQRNKTTKQVRTIEK 236
Score = 26.5 bits (58), Expect = 5.4
Identities = 4/32 (12%), Positives = 10/32 (31%)
Query: 351 RTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
++ K + +K++ K K
Sbjct: 199 HAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQ 230
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 29.0 bits (65), Expect = 0.30
Identities = 3/22 (13%), Positives = 9/22 (40%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K+ + + K+ +K+
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKR 100
Score = 28.2 bits (63), Expect = 0.53
Identities = 2/22 (9%), Positives = 9/22 (40%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
+ + + K+ +K++
Sbjct: 80 EVVPEGYEMKRVGDYYVFEKRE 101
Score = 27.5 bits (61), Expect = 0.97
Identities = 4/37 (10%), Positives = 12/37 (32%)
Query: 343 STPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKK 379
S + H + + + K+ +K++
Sbjct: 65 SHRAKAILWNHGILKEVVPEGYEMKRVGDYYVFEKRE 101
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 28.7 bits (64), Expect = 0.41
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 353 HSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
+ V L+ K + + K+ K+KS
Sbjct: 67 YKVHLDLWVKSLSPQDRAAYKEYISNKRKS 96
>d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p)
{Deinococcus radiodurans [TaxId: 1299]}
Length = 104
Score = 27.9 bits (62), Expect = 0.65
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 304 KEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKK 363
+ R R+++ R+S +I + +I S G + S + + A
Sbjct: 15 AASGRLRLSVYRSSKHIYAQII-DDSRGQTLAAASSAALKSGNKTDTAAAVGKALAAAAA 73
Query: 364 KKKKKK 369
+K K+
Sbjct: 74 EKGIKQ 79
>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon
Sulfolobus shibatae [TaxId: 2286]}
Length = 164
Score = 28.9 bits (65), Expect = 0.71
Identities = 11/61 (18%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 319 NIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKK 378
++ S I S G ++++ + + ++ + + +K K+ +K+K+++ KK
Sbjct: 108 HLCSTKIPYKSAGKE--SIAEVED---IEKEIK--NALMEVARKLKQYLSEKRKEQEAKK 160
Query: 379 K 379
K
Sbjct: 161 K 161
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 96
Score = 27.4 bits (61), Expect = 0.87
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 340 TPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKK 379
T + + + V KKK ++ + K+K K +
Sbjct: 57 TDKKIDIQKGASDEEV----KKKLEESNLTEYMKEKIKIR 92
>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1
{Chicken (Gallus gallus) [TaxId: 9031]}
Length = 66
Score = 26.9 bits (59), Expect = 0.94
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 351 RTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
+ H V +K + + +K K KK++
Sbjct: 36 KLHQVNRPLTMRKDGIQTRNRKVSSKGKKRR 66
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 28.5 bits (64), Expect = 0.94
Identities = 6/25 (24%), Positives = 17/25 (68%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
+K++KK+ ++KK+ + +++K
Sbjct: 101 FQLQKEQKKQLTSQEKKQIRLEREK 125
Score = 26.6 bits (59), Expect = 3.9
Identities = 5/23 (21%), Positives = 15/23 (65%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
KK+ ++KK+ + +++K ++
Sbjct: 107 QKKQLTSQEKKQIRLEREKFEED 129
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 86
Score = 27.1 bits (60), Expect = 1.0
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 8/31 (25%)
Query: 359 AKKKKKK--------KKKKKKKKKKKKKKKK 381
A+K+++ + KKKK+K++K
Sbjct: 56 ARKERQLHMQLYPGWSARDNYGKKKKRKREK 86
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 27.9 bits (62), Expect = 1.0
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
K K K K +++ K + + +K+
Sbjct: 2 KNKGKGGKNRRRGKNENESEKR 23
Score = 27.1 bits (60), Expect = 2.3
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 358 NAKKKKKKKKKKKKKKKKKKKK 379
N K K +++ K + + +K++
Sbjct: 3 NKGKGGKNRRRGKNENESEKRE 24
Score = 26.0 bits (57), Expect = 4.4
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 360 KKKKKKKKKKKKKKKKKKKKK 380
K K K +++ K + + +K++
Sbjct: 4 KGKGGKNRRRGKNENESEKRE 24
Score = 26.0 bits (57), Expect = 4.4
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 361 KKKKKKKKKKKKKKKKKKKKK 381
K K K +++ K + + +K++
Sbjct: 4 KGKGGKNRRRGKNENESEKRE 24
Score = 25.2 bits (55), Expect = 8.2
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 366 KKKKKKKKKKKKKKKKS 382
K K K K +++ K ++
Sbjct: 2 KNKGKGGKNRRRGKNEN 18
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 28.5 bits (64), Expect = 1.1
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
A+ + +K+ K++K K K++ +K
Sbjct: 109 FKAQTEARKQMSKEEKLKIKEENEK 133
Score = 27.0 bits (60), Expect = 3.7
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
A+K+ K++K K K++ +K K+
Sbjct: 115 ARKQMSKEEKLKIKEENEKLLKE 137
Score = 26.2 bits (58), Expect = 6.1
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
+ +K+ K++K K K++ +K
Sbjct: 113 TEARKQMSKEEKLKIKEENEKL 134
>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 88
Score = 27.2 bits (59), Expect = 1.2
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 4/68 (5%)
Query: 289 WIPGFVMVTMYYRIYKEAVRQRIALSRTSSNIVSPVIQSTSEGSA----VVTVSDTPQST 344
W P V Y Y + + + G +++V +S
Sbjct: 21 WTPPRSRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESE 80
Query: 345 PVTRNVRT 352
P++ ++T
Sbjct: 81 PISGILKT 88
>d2zjro1 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus
radiodurans [TaxId: 1299]}
Length = 94
Score = 27.1 bits (60), Expect = 1.3
Identities = 6/54 (11%), Positives = 16/54 (29%)
Query: 327 STSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKK 380
E A+ + + + + KK +K K + +++
Sbjct: 27 DKVELKALFVGGEQTVFGEDAGKYTVQAEVVEHGRGKKIYIRKYKSGVQYRRRT 80
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 26.3 bits (58), Expect = 1.9
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 360 KKKKKKKKKKKKKKKKKK 377
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 26.3 bits (58), Expect = 1.9
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 361 KKKKKKKKKKKKKKKKKK 378
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 26.3 bits (58), Expect = 1.9
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 362 KKKKKKKKKKKKKKKKKK 379
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 26.3 bits (58), Expect = 1.9
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 363 KKKKKKKKKKKKKKKKKK 380
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 26.3 bits (58), Expect = 1.9
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 364 KKKKKKKKKKKKKKKKKK 381
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 387
Score = 28.0 bits (61), Expect = 2.1
Identities = 17/90 (18%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 245 ISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMYYRIYK 304
+ + T +QY + +V + Y IS S + + G V++ +Y ++
Sbjct: 289 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVF- 347
Query: 305 EAVRQRIALSRTSSNIVSPVIQSTSEGSAV 334
+ R+RI + ++ ++ + EG V
Sbjct: 348 DRARKRIGFAVSACHVHDEFRTAAVEGPFV 377
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 27.4 bits (60), Expect = 2.1
Identities = 3/23 (13%), Positives = 12/23 (52%)
Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
K K++ + + + + +K++
Sbjct: 160 PKPKREAFLEANRAELVRFQKEA 182
>d1usta_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 92
Score = 26.3 bits (58), Expect = 2.2
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 354 SVTLNAKKKKKKKKKKK 370
+V L KK + KK+K+
Sbjct: 74 AVKLAKKKSPEVKKEKE 90
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 26.5 bits (58), Expect = 2.3
Identities = 4/30 (13%), Positives = 14/30 (46%)
Query: 353 HSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
+ V L + ++++++ ++K S
Sbjct: 74 YEVELLRFLESLPEEEQQRVLGEEKMLNIS 103
>d2nysa1 b.136.1.2 (A:3-119) Uncharacterized protein AGR_C_3712p
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 117
Score = 26.5 bits (59), Expect = 2.8
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 66 VIKH--RKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTD 105
VI+H +++ F + L+F+D L V+P+NAI D
Sbjct: 65 VIQHQFWDMKVTETGFEIGLSFSDTPEKL-VIPYNAIRGFYD 105
>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate
dehydrogenase/cyclohydrolase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 171
Score = 26.2 bits (57), Expect = 4.6
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 188 KQYRKHHPNVCIFVVNVYYALISSSISFWI---PGFVMVTMLVVNTVLL 233
+Y K F ++ + G V + ML+ N + L
Sbjct: 114 TEYIKEGAVCINFACTKNFSDDVKEKASLYVPMTGKVTIAMLLRNMLRL 162
>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 97
Score = 25.2 bits (55), Expect = 5.5
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 306 AVRQRIALSRTSSNIVSPVIQSTSEGS-AVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKK 364
R R+++ R++ +I + +I T + + D T N+ AKK +
Sbjct: 3 TERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFGLDSTNNIEA------AKKVGE 56
Query: 365 KKKKKKKKKKKKK 377
K+ +K K+
Sbjct: 57 LVAKRALEKGIKQ 69
>d2qamr1 b.155.1.1 (R:1-103) Ribosomal protein L21p {Escherichia
coli [TaxId: 562]}
Length = 103
Score = 25.1 bits (55), Expect = 6.4
Identities = 6/37 (16%), Positives = 16/37 (43%)
Query: 344 TPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKK 380
P + + + +K K K +++K +K++
Sbjct: 51 VPFVDGGVIKAEVVAHGRGEKVKIVKFRRRKHYRKQQ 87
>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 93
Score = 25.1 bits (55), Expect = 6.4
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 356 TLNAKKKKKKKKKKKKKKKKKKK 378
T+N K+K+ + ++ +KK
Sbjct: 54 TMNVPGKRKRVGRFIGQRNDRKK 76
>d1u60a_ e.3.1.2 (A:) Probable glutaminase YbaS {Escherichia coli
[TaxId: 562]}
Length = 309
Score = 26.3 bits (58), Expect = 7.5
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 6/30 (20%)
Query: 109 FGYFMCDVWNSFDVYFSTASILHLCCISVD 138
GY CD + DVY C ++
Sbjct: 177 AGYLYCDAMEACDVYT------RQCSTLLN 200
>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus
thermophilus [TaxId: 274]}
Length = 86
Score = 24.3 bits (53), Expect = 8.9
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 25/78 (32%)
Query: 308 RQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKK 367
R R+++ R+ +I + +I V S + A K K K
Sbjct: 1 RLRLSVFRSLKHIYAQIIDDEK-------------------GVTLVSASSLALKLKGNKT 41
Query: 368 KKKKK------KKKKKKK 379
+ ++ +K
Sbjct: 42 EVARQVGRALAEKALALG 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.137 0.426
Gapped
Lambda K H
0.267 0.0567 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,464,879
Number of extensions: 70340
Number of successful extensions: 1013
Number of sequences better than 10.0: 1
Number of HSP's gapped: 809
Number of HSP's successfully gapped: 99
Length of query: 382
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 295
Effective length of database: 1,213,086
Effective search space: 357860370
Effective search space used: 357860370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.9 bits)