BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16862
(303 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 147 bits (371), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 108/179 (60%), Gaps = 1/179 (0%)
Query: 45 GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
G++M I++ + GN+LVI ++ K +L+ +TNYF+ SLA ADL++ L V+PF A LT
Sbjct: 186 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILT 245
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
W FG F C+ W S DV TASI LC I+VDRY+AI P +Y ++ +N +++
Sbjct: 246 KTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 305
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCI-FVVNVYYALISSSISFWIPGFVM 222
VWI+ G+ SF PI + WY + + C F N YA+ SS +SF++P +M
Sbjct: 306 VWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIM 364
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 108/179 (60%), Gaps = 1/179 (0%)
Query: 45 GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
G++M I++ + GN+LVI ++ K +L+ +TNYF+ SLA ADL++ L V+PF A LT
Sbjct: 9 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILT 68
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
W FG F C+ W S DV TASI LC I+VDRY+AI P +Y ++ +N +++
Sbjct: 69 KTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 128
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCI-FVVNVYYALISSSISFWIPGFVM 222
VWI+ G+ SF PI + WY + + C F N YA+ SS +SF++P +M
Sbjct: 129 VWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIM 187
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 107/179 (59%), Gaps = 1/179 (0%)
Query: 45 GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
G++M I++ + GN+LVI ++ K +L+ +TNYF+ SLA ADL++ L V+PF A L
Sbjct: 13 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAACILM 72
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
W FG F C+ W S DV TASI LC I+VDRY+AI P +Y ++ +N +++
Sbjct: 73 KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 132
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCI-FVVNVYYALISSSISFWIPGFVM 222
VWI+ G+ SF PI + WY + + C F N YA+ SS +SF++P +M
Sbjct: 133 VWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIM 191
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 144 bits (363), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 110/179 (61%), Gaps = 1/179 (0%)
Query: 45 GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
+LM +++ + GN+LVI ++ ++L+ +TN F+ SLA ADL+V L V+PF A + +
Sbjct: 15 SLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVR 74
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
W +G F+C++W S DV TASI LC I++DRY AI P +Y +M + +++
Sbjct: 75 GTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICT 134
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHH-PNVCIFVVNVYYALISSSISFWIPGFVM 222
VW + ++SF PIM+ W+ D + + + P C FV N YA+ SS ISF+IP +M
Sbjct: 135 VWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIM 193
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 144 bits (362), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 110/179 (61%), Gaps = 1/179 (0%)
Query: 45 GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
+LM +++ + GN+LVI ++ ++L+ +TN F+ SLA ADL+V L V+PF A + +
Sbjct: 15 SLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVR 74
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
W +G F+C++W S DV TASI LC I++DRY AI P +Y +M + +++
Sbjct: 75 GTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICT 134
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHH-PNVCIFVVNVYYALISSSISFWIPGFVM 222
VW + ++SF PIM+ W+ D + + + P C FV N YA+ SS ISF+IP +M
Sbjct: 135 VWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIM 193
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 144 bits (362), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 107/179 (59%), Gaps = 1/179 (0%)
Query: 45 GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
G++M I++ + GN+LVI ++ K +L+ +TNYF+ SLA ADL++ L V+PF A L
Sbjct: 44 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 103
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
W FG F C+ W S DV TASI LC I+VDRY+AI P +Y ++ +N +++
Sbjct: 104 KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 163
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCI-FVVNVYYALISSSISFWIPGFVM 222
VWI+ G+ SF PI + WY + + C F N YA+ SS +SF++P +M
Sbjct: 164 VWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIM 222
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 144 bits (362), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 107/179 (59%), Gaps = 1/179 (0%)
Query: 45 GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
G++M I++ + GN+LVI ++ K +L+ +TNYF+ SLA ADL++ L V+PF A L
Sbjct: 45 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 104
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
W FG F C+ W S DV TASI LC I+VDRY+AI P +Y ++ +N +++
Sbjct: 105 KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 164
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCI-FVVNVYYALISSSISFWIPGFVM 222
VWI+ G+ SF PI + WY + + C F N YA+ SS +SF++P +M
Sbjct: 165 VWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIM 223
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 144 bits (362), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 110/180 (61%), Gaps = 3/180 (1%)
Query: 45 GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
G++M I++ + GN+LVI ++ K +L+ +TNYF+ SLA ADL++ L V+PF A L
Sbjct: 14 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 73
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
W FG F C+ W S DV TASI LC I+VDRY+AI P +Y ++ +N +++
Sbjct: 74 KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 133
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPN--VCIFVVNVYYALISSSISFWIPGFVM 222
VWI+ G+ SF PI + WY H++ + N C F N YA+ SS +SF++P +M
Sbjct: 134 VWIVSGLTSFLPIQMHWYRAT-HQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIM 192
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 143 bits (361), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 107/179 (59%), Gaps = 1/179 (0%)
Query: 45 GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
G++M I++ + GN+LVI ++ K +L+ +TNYF+ SLA ADL++ L V+PF A L
Sbjct: 38 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 97
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
W FG F C+ W S DV TASI LC I+VDRY+AI P +Y ++ +N +++
Sbjct: 98 KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 157
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCI-FVVNVYYALISSSISFWIPGFVM 222
VWI+ G+ SF PI + WY + + C F N YA+ SS +SF++P +M
Sbjct: 158 VWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIM 216
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 110/180 (61%), Gaps = 3/180 (1%)
Query: 45 GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
G++M I++ + GN+LVI ++ K +L+ +TNYF+ SLA ADL++ L V+PF A L
Sbjct: 37 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 96
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
W FG F C+ W S DV TASI LC I+VDRY+AI P +Y ++ +N +++
Sbjct: 97 KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 156
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPN--VCIFVVNVYYALISSSISFWIPGFVM 222
VWI+ G+ SF PI + WY H++ + N C F N YA+ SS +SF++P +M
Sbjct: 157 VWIVSGLTSFLPIQMHWYRAT-HQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIM 215
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 107/179 (59%), Gaps = 1/179 (0%)
Query: 45 GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
G++M I++ + GN+LVI ++ K +L+ +TNYF+ SLA ADL++ L V+PF A L
Sbjct: 45 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 104
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
W FG F C+ W S DV TASI LC I+VDRY+AI P +Y ++ +N +++
Sbjct: 105 KMWTFGNFWCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 164
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCI-FVVNVYYALISSSISFWIPGFVM 222
VWI+ G+ SF PI + WY + + C F N YA+ SS +SF++P +M
Sbjct: 165 VWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIM 223
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 103/174 (59%), Gaps = 14/174 (8%)
Query: 49 CFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDE-W 107
C +I+ + GN LV ++V+K R L+ TNY VVSLA ADLLVA VMP+ + +T W
Sbjct: 46 CALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVW 105
Query: 108 YFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNT---VLLMLSN 164
F CDV+ + DV TASI +LC IS+DRY A+V P+ Y Q++ V LM++
Sbjct: 106 NFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITA 165
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIP 218
VW+L +S P++ G+ TT D P VC + N + + SS +SF++P
Sbjct: 166 VWVLAFAVS-CPLLFGFNTTGD--------PTVC-SISNPDFVIYSSVVSFYLP 209
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Query: 53 ITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYF 112
+ I+GN+LV++S+ +R L+ + NYF+ SLA ADL++ + M + ++ W G
Sbjct: 35 LVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPV 94
Query: 113 MCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWIL---- 168
+CD+W + D S AS+++L IS DRY+ + KPL YP+ +M++ W+L
Sbjct: 95 VCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFIL 154
Query: 169 --PGIISFTPIMLGWYTTPDHKQYRKHHPNVCI 199
P I+ F ++G T D + Y + N +
Sbjct: 155 WAPAIL-FWQFIVGVRTVEDGECYIQFFSNAAV 186
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 77/135 (57%), Gaps = 1/135 (0%)
Query: 47 LMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDE 106
L F+ + I+GN+LVI++ +++L+ + NYF++SLA ADL++ + M + +
Sbjct: 18 LTGFLALVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNR 77
Query: 107 WYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVW 166
W G CD+W S D S AS+++L IS DRY++I +PL Y +M+ W
Sbjct: 78 WALGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAW 137
Query: 167 ILPGIISFTPIMLGW 181
++ ++ + P +L W
Sbjct: 138 VISFVL-WAPAILFW 151
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 5/186 (2%)
Query: 37 HIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMP 96
+ P ++ +C + + NLLV+ +V RKL + N ++VSL+ ADL+V VMP
Sbjct: 7 QLMPLVVVLSTICLVTVGL---NLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMP 63
Query: 97 FNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQN 156
N + L +W G +C W S D STASI + + +DRY ++ +PL+Y +
Sbjct: 64 MNILYLLMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKT 123
Query: 157 TVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFW 216
+ W L + PI LGW R+ F ++ ++++ I+F+
Sbjct: 124 RASATILGAWFL-SFLWVIPI-LGWNHFMQQTSVRREDKCETDFYDVTWFKVMTAIINFY 181
Query: 217 IPGFVM 222
+P +M
Sbjct: 182 LPTLLM 187
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
Query: 51 IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
I + AILGN+LV +V + L+ +TNYFVVSLA AD+LV + +PF ++++ +
Sbjct: 16 IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPFA--ITISTGFCAA 73
Query: 111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPG 170
C F + + +SI L I++DRY AI PL+Y ++ +++ W+L
Sbjct: 74 CHGCLFIACFVLVLAQSSIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWVLSF 133
Query: 171 IISFTPIMLGWYTTPDHKQYRKH 193
I TP MLGW K+ + H
Sbjct: 134 AIGLTP-MLGWNNCGQPKEGKNH 155
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
Query: 51 IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
I + AILGN+LV +V + L+ +TNYFVVSLA AD+ V + +PF ++++ +
Sbjct: 16 IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFA--ITISTGFCAA 73
Query: 111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPG 170
C F + + +SI L I++DRY AI PL+Y ++ +++ W+L
Sbjct: 74 CHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSF 133
Query: 171 IISFTPIMLGWYTTPDHKQYRKH 193
I TP MLGW K+ ++H
Sbjct: 134 AIGLTP-MLGWNNCGQPKEGKQH 155
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 77/143 (53%), Gaps = 3/143 (2%)
Query: 51 IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
I + AILGN+LV +V + L+ +TNYFVVS A AD+LV + +PF ++++ +
Sbjct: 16 IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFA--IAISTGFCAA 73
Query: 111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPG 170
C F + + +SI L I++DRY AI PL+Y ++ +++ W+L
Sbjct: 74 CHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSF 133
Query: 171 IISFTPIMLGWYTTPDHKQYRKH 193
I TP MLGW K+ + H
Sbjct: 134 AIGLTP-MLGWNNCGQPKEGKAH 155
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 77/142 (54%), Gaps = 20/142 (14%)
Query: 66 VIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT----DEWYFGYFMCDVWNSFD 121
++ H+++R +TNYF+V+LAFA+ +A FN +V+ T +EWY+G F C N F
Sbjct: 57 ILAHKRMRTVTNYFLVNLAFAEASMA----AFNTVVNFTYAVHNEWYYGLFYCKFHNFFP 112
Query: 122 VYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGW 181
+ ASI + ++ DRY AI+ PLQ + V++ + +W+L +++F G+
Sbjct: 113 IAAVFASIYSMTAVAFDRYMAIIHPLQPRLSATATKVVICV--IWVLALLLAFPQ---GY 167
Query: 182 YTTPDHKQYR-------KHHPN 196
Y+T + R HPN
Sbjct: 168 YSTTETMPSRVVCMIEWPEHPN 189
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 77/143 (53%), Gaps = 3/143 (2%)
Query: 51 IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
I + AILGN+LV +V + L+ +TNYFVVSLA AD+ V + +PF ++++ +
Sbjct: 31 IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPF--AITISTGFCAA 88
Query: 111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPG 170
C F + + +SI L I++DRY AI PL+Y ++ +++ W+L
Sbjct: 89 CHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSF 148
Query: 171 IISFTPIMLGWYTTPDHKQYRKH 193
I TP MLGW K+ + H
Sbjct: 149 AIGLTP-MLGWNNCGQPKEGKNH 170
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 77/143 (53%), Gaps = 3/143 (2%)
Query: 51 IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
I + AILGN+LV +V + L+ +TNYFVVSLA AD+ V + +PF ++++ +
Sbjct: 41 IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPF--AITISTGFCAA 98
Query: 111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPG 170
C F + + +SI L I++DRY AI PL+Y ++ +++ W+L
Sbjct: 99 CHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSF 158
Query: 171 IISFTPIMLGWYTTPDHKQYRKH 193
I TP MLGW K+ + H
Sbjct: 159 AIGLTP-MLGWNNCGQPKEGKNH 180
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 3/146 (2%)
Query: 37 HIFPFI--IKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCV 94
HI P I I + + + ++GN LV+ +I++ K++ TN ++ +LA AD LV
Sbjct: 16 HISPAIPVIITAVYSVVFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVT-TT 74
Query: 95 MPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMN 154
MPF + V L + W FG +C + S D Y SI L +SVDRY A+ P++
Sbjct: 75 MPFQSTVYLMNSWPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRT 134
Query: 155 QNTVLLMLSNVWILPGIISFTPIMLG 180
++ +W+L + + I+LG
Sbjct: 135 PLKAKIINICIWLLSSSVGISAIVLG 160
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 2/131 (1%)
Query: 55 AILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMC 114
+LGN+LV+ ++++ KL+ TN ++ +LA AD L A +PF + L + W FG +C
Sbjct: 28 GLLGNVLVMFGIVRYTKLKTATNIYIFNLALADAL-ATSTLPFQSAKYLMETWPFGELLC 86
Query: 115 DVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISF 174
S D Y SI L +SVDRY A+ P++ L+ +W+L +
Sbjct: 87 KAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVG- 145
Query: 175 TPIMLGWYTTP 185
PIM+ T P
Sbjct: 146 VPIMVMAVTQP 156
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 47 LMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDE 106
L + + + GN LV+ ++++ K++ TN ++ +LA AD L A +PF ++ L
Sbjct: 23 LYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADAL-ATSTLPFQSVNYLMGT 81
Query: 107 WYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQY-PIIMNQNTVLLMLSNV 165
W FG +C + S D Y SI LC +SVDRY A+ P++ +N ++ + N
Sbjct: 82 WPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCN- 140
Query: 166 WILPGIISFTPIMLGWYTTPDHKQ 189
WIL I P+M + T ++Q
Sbjct: 141 WILSSAIGL-PVM--FMATTKYRQ 161
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 1/138 (0%)
Query: 51 IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
+ + +LGN LV+ +++H K++ TN ++ +LA AD LV L +PF L W FG
Sbjct: 135 VCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLV-LLTLPFQGTDILLGFWPFG 193
Query: 111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPG 170
+C + D Y S L +SVDRY AI P++ + + + +W L
Sbjct: 194 NALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALAS 253
Query: 171 IISFTPIMLGWYTTPDHK 188
++ ++G D +
Sbjct: 254 VVGVPVAIMGSAQVEDEE 271
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 68 KHRKLRIITNYFVVSLAFADLLVALC-VMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFST 126
K + L+ N F+++LAF+D +L P I +W FG+ C V+ F
Sbjct: 60 KTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGF 119
Query: 127 ASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGW 181
SI+ + IS+DRY I +P+ M+ +M+ VW+ + + PI GW
Sbjct: 120 MSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPI-FGW 173
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 68 KHRKLRIITNYFVVSLAFADLLVALC-VMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFST 126
K + L+ N F+++LAF+D +L P I +W FG+ C V+ F
Sbjct: 61 KTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGF 120
Query: 127 ASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGW 181
SI+ + IS+DRY I +P+ M+ +M+ VW+ + + PI GW
Sbjct: 121 MSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPI-FGW 174
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 51 IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
I +T I+GN LVI+ + +KLR +T+ + + L+ ADLL + +PF A+ ++ + WYFG
Sbjct: 58 IFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVI-TLPFWAVDAVAN-WYFG 115
Query: 111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIV 144
F+C + +S+ L IS+DRY AIV
Sbjct: 116 NFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIV 149
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 51 IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
I +T I+GN LVI+ + +KLR +T+ + + L+ ADLL + +PF A+ ++ + WYFG
Sbjct: 58 IFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVI-TLPFWAVDAVAN-WYFG 115
Query: 111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIV 144
F+C + +S+ L IS+DRY AIV
Sbjct: 116 NFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIV 149
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 51 IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
I +T I+GN LVI+ + +KLR +T+ + + L+ ADLL + +PF A+ ++ + WYFG
Sbjct: 58 IFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVI-TLPFWAVDAVAN-WYFG 115
Query: 111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIV 144
F+C + +S+ L IS+DRY AIV
Sbjct: 116 NFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIV 149
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 46 MLMCFIIITAILG---NLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
ML ++ + +LG N L + ++H+KLR NY +++LA ADL + S
Sbjct: 40 MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTS 99
Query: 103 LTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLML 162
L + FG C++ F ++ L ++++RY + KP+ +N ++ +
Sbjct: 100 LHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGV 158
Query: 163 SNVWILPGIISFTPIMLGW 181
+ W++ + P ++GW
Sbjct: 159 AFTWVM-ALACAAPPLVGW 176
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 46 MLMCFIIITAILG---NLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
ML ++ + +LG N L + ++H+KLR NY +++LA ADL + S
Sbjct: 39 MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTS 98
Query: 103 LTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLML 162
L + FG C++ F ++ L ++++RY + KP+ +N ++ +
Sbjct: 99 LHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGV 157
Query: 163 SNVWILPGIISFTPIMLGW 181
+ W++ + P ++GW
Sbjct: 158 AFTWVM-ALACAAPPLVGW 175
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 46 MLMCFIIITAILG---NLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
ML ++ + +LG N L + ++H+KLR NY +++LA ADL + S
Sbjct: 40 MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTS 99
Query: 103 LTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLML 162
L + FG C++ F ++ L ++++RY + KP+ +N ++ +
Sbjct: 100 LHGYFVFGPTGCNLQGFFATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGV 158
Query: 163 SNVWILPGIISFTPIMLGW 181
+ W++ + P ++GW
Sbjct: 159 AFTWVM-ALACAAPPLVGW 176
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 46 MLMCFIIITAILG---NLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
ML ++ + +LG N L + ++H+KLR NY +++LA ADL + S
Sbjct: 40 MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTS 99
Query: 103 LTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLML 162
L + FG C++ F ++ L ++++RY + KP+ +N ++ +
Sbjct: 100 LHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGV 158
Query: 163 SNVWILPGIISFTPIMLGW 181
+ W++ + P ++GW
Sbjct: 159 AFTWVM-ALACAAPPLVGW 176
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 46 MLMCFIIITAILG---NLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
ML ++ + +LG N L + ++H+KLR NY +++LA ADL + S
Sbjct: 40 MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTS 99
Query: 103 LTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLML 162
L + FG C++ F ++ L ++++RY + KP+ +N ++ +
Sbjct: 100 LHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGV 158
Query: 163 SNVWILPGIISFTPIMLGW 181
+ W++ + P ++GW
Sbjct: 159 AFTWVM-ALACAAPPLVGW 176
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 46 MLMCFIIITAILG---NLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
ML ++ + +LG N L + ++H+KLR NY +++LA ADL + S
Sbjct: 39 MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTS 98
Query: 103 LTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLML 162
L + FG C++ F ++ L ++++RY + KP+ +N ++ +
Sbjct: 99 LHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGV 157
Query: 163 SNVWILPGIISFTPIMLGW 181
+ W++ + P ++GW
Sbjct: 158 AFTWVM-ALACAAPPLVGW 175
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 50 FIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYF 109
+ + ++LGN LV++ ++ R R +T+ ++++LA ADLL AL +P A S + W F
Sbjct: 20 LVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFAL-TLPIWA-ASKVNGWIF 77
Query: 110 GYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIV 144
G F+C V + + IL L CISVDRY AIV
Sbjct: 78 GTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIV 112
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 71/139 (51%), Gaps = 13/139 (9%)
Query: 46 MLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTD 105
++ CFII L N+ V++++ K +K YF+ +LA +DLL + N ++S
Sbjct: 72 LICCFII----LENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTA-NLLLSGAT 126
Query: 106 EWYF---GYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLML 162
+ +F+ + S V S AS+ L I+++RY ++K ++ N + L++
Sbjct: 127 TYKLTPAQWFLRE--GSMFVALS-ASVFSLLAIAIERYITMLK-MKLHNGSNNFRLFLLI 182
Query: 163 SNVWILPGIISFTPIMLGW 181
S W++ I+ PIM GW
Sbjct: 183 SACWVISLILGGLPIM-GW 200
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 59 NLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT-DEWYFGYFMCDVW 117
N++ I+ I K++ +++ LA AD+L + V+PF + +W FG +C
Sbjct: 38 NIMAIVVFILKMKVKKPAVVYMLHLATADVLF-VSVLPFKISYYFSGSDWQFGSELCRFV 96
Query: 118 NSFDVYFSTASILHLCCISVDRYYAIVKPLQ 148
+ ASIL + IS+DR+ A+V P+Q
Sbjct: 97 TAAFYCNMYASILLMTVISIDRFLAVVYPMQ 127
>pdb|1HLL|A Chain A, Nmr Structure Of T3-I2, A 32 Residue Peptide From The
Alpha- 2a Adrenergic Receptor
Length = 32
Score = 34.7 bits (78), Expect = 0.059, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 21/24 (87%)
Query: 126 TASILHLCCISVDRYYAIVKPLQY 149
T+SI+HLC IS+DRY++I + ++Y
Sbjct: 1 TSSIVHLCAISLDRYWSITQAIEY 24
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 33/67 (49%)
Query: 107 WYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVW 166
W FG C + + A+ L++ +SV RY AI P + +M+++ +S +W
Sbjct: 103 WAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIW 162
Query: 167 ILPGIIS 173
+ +++
Sbjct: 163 LASALLA 169
>pdb|1HOF|A Chain A, Nmr Structure Of T3-I2, A 32 Residue Peptide From The
Alpha- 2a Adrenergic Receptor
Length = 32
Score = 33.1 bits (74), Expect = 0.22, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 20/23 (86%)
Query: 127 ASILHLCCISVDRYYAIVKPLQY 149
+SI+HLC IS+DRY++I + ++Y
Sbjct: 2 SSIVHLCAISLDRYWSITQAIEY 24
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 29.3 bits (64), Expect = 2.5, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 10/93 (10%)
Query: 102 SLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLM 161
S EW FG + + + V+F + + + + + R + Q N+ V+ +
Sbjct: 911 SYGQEWTFGQRLYQQYTCYTVFFISIEMCQIADVLI-RKTRRLSAFQQGFFRNRILVIAI 969
Query: 162 LSNVWI---------LPGIISFTPIMLGWYTTP 185
+ V I +P I +F PI W+ P
Sbjct: 970 VFQVCIGCFLCYCPGMPNIFNFMPIRFQWWLVP 1002
>pdb|1HO9|A Chain A, Best 20 Nmr Conformers Of D130i Mutant T3-I2, A 32 Residue
Peptide From The Alpha 2a Adrenergic Receptor
pdb|1HOD|A Chain A, Nmr Structure Of D130i Mutant T3-I2, A 32 Residue Peptide
From The Alpha 2a Adrenergic Receptor
Length = 32
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 19/23 (82%)
Query: 127 ASILHLCCISVDRYYAIVKPLQY 149
+SI+HLC IS+ RY++I + ++Y
Sbjct: 2 SSIVHLCAISLIRYWSITQAIEY 24
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.333 0.144 0.487
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,697,956
Number of Sequences: 62578
Number of extensions: 210957
Number of successful extensions: 552
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 477
Number of HSP's gapped (non-prelim): 44
length of query: 303
length of database: 14,973,337
effective HSP length: 98
effective length of query: 205
effective length of database: 8,840,693
effective search space: 1812342065
effective search space used: 1812342065
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 51 (24.3 bits)