RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16862
(303 letters)
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Length = 348
Score = 92.3 bits (228), Expect = 5e-22
Identities = 40/246 (16%), Positives = 84/246 (34%), Gaps = 3/246 (1%)
Query: 14 NINYTSTNFSNTSLFPTNSTIHIHIFP--FIIKGMLMCFIIITAILGNLLVIISVIKHRK 71
N +N + P + + P F + M +I+ N L + ++H+K
Sbjct: 8 NFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKK 67
Query: 72 LRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILH 131
LR NY +++LA ADL + SL + FG C++ F ++
Sbjct: 68 LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWS 127
Query: 132 LCCISVDRYYAIVKPLQYPIIMNQNTV-LLMLSNVWILPGIISFTPIMLGWYTTPDHKQY 190
L ++++RY + KP+ + + + + V L +
Sbjct: 128 LVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSC 187
Query: 191 RKHHPNVCIFVVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKKRKKKKNQHHRD 250
+ N + + + F IP V+ + K+ ++++ +
Sbjct: 188 GIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAE 247
Query: 251 VWINRT 256
+ R
Sbjct: 248 KEVTRM 253
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 39.5 bits (92), Expect = 1e-04
Identities = 11/69 (15%), Positives = 32/69 (46%)
Query: 224 KKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRK 283
+++ ++ +KK + ++++ ++ + + E E E +K ++ K K K
Sbjct: 38 RRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEK 97
Query: 284 KKRKKKKNQ 292
+K + N+
Sbjct: 98 LAQKMESNK 106
Score = 37.2 bits (86), Expect = 6e-04
Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 10/91 (10%)
Query: 221 VMKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWI-------NRTSRGEEEEEKKKKK---K 270
V + +++ ++ +KK + R + R E E +K
Sbjct: 29 VPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENN 88
Query: 271 KKKKKTTKKKKRKKKRKKKKNQHHRDVWQKK 301
K +K +K + K+ + H ++
Sbjct: 89 NFIKMAKEKLAQKMESNKENREAHLAAMLER 119
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 31.6 bits (71), Expect = 0.088
Identities = 8/64 (12%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
+ ++ K+ +K + R + + R + E+E+ K+ +K+ + + +
Sbjct: 239 RSYQEHLKQLTEKMENDRVQLLKEQERTL---ALKLQEQEQLLKEGFQKESRIMKNEIQD 295
Query: 283 KKKR 286
+ +
Sbjct: 296 LQTK 299
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 29.9 bits (67), Expect = 0.12
Identities = 5/97 (5%), Positives = 32/97 (32%), Gaps = 24/97 (24%)
Query: 223 KKKKKRKKKKKKKK---------KKKRKKKKNQHHRDV-------WINRTS--------R 258
+ K + + K + K+ + W + +
Sbjct: 7 GQLKDKFDGRPTKPPPNSYSLYCAELMANMKDVPSTERMVLCSQQWKLLSQKEKDAYHKK 66
Query: 259 GEEEEEKKKKKKKKKKKTTKKKKRKKKRKKKKNQHHR 295
+++++ + + + ++ ++++++ ++K +
Sbjct: 67 CDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNIS 103
Score = 28.4 bits (63), Expect = 0.41
Identities = 7/70 (10%), Positives = 27/70 (38%)
Query: 222 MKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKK 281
M K ++ ++ K +Q +D + + + +++ E + + + ++++
Sbjct: 33 MANMKDVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQR 92
Query: 282 RKKKRKKKKN 291
+ K
Sbjct: 93 VLGEEKMLNI 102
Score = 28.4 bits (63), Expect = 0.48
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 3/83 (3%)
Query: 224 KKKKRKKKKKKKKKKKRKKKKNQH---HRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKK 280
+ K K + K N + ++ N E ++ K +K
Sbjct: 2 SSGSSGQLKDKFDGRPTKPPPNSYSLYCAELMANMKDVPSTERMVLCSQQWKLLSQKEKD 61
Query: 281 KRKKKRKKKKNQHHRDVWQKKYT 303
KK +KK + ++ + +
Sbjct: 62 AYHKKCDQKKKDYEVELLRFLES 84
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 31.1 bits (70), Expect = 0.12
Identities = 20/100 (20%), Positives = 31/100 (31%), Gaps = 17/100 (17%)
Query: 207 ALISSSISFWIPG-------------FVMKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWI 253
+L+ SIS WI +K + + K K N HR
Sbjct: 150 SLMLQSISKWIYDMDPFEPLKYTEPLKALKTRIAEEGSKAVFSPLIEKLILNNSHRVTIE 209
Query: 254 NRTSRG----EEEEEKKKKKKKKKKKTTKKKKRKKKRKKK 289
+ EE EEK +K K T + + ++
Sbjct: 210 MQPDPEKATQEEVEEKNILEKVKAAMTEEDLAELARATEE 249
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 29.5 bits (66), Expect = 0.14
Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 221 VMKKKKKRKKKKKKKKKKKRKKKKN-------QHHRDVWINRTSRGEEEEEKKKKKKKKK 273
V ++ K++ +KKK K+ + ++ V + KK +K K
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKA 61
Query: 274 KKTTKKKKRKKKRKKKKNQHHRDV 297
+K+ + K + K ++ +
Sbjct: 62 LTPEEKQPYEAKAQADKKRYESEK 85
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 337
Score = 30.8 bits (69), Expect = 0.21
Identities = 7/79 (8%), Positives = 16/79 (20%), Gaps = 10/79 (12%)
Query: 219 GFVMKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTK 278
V + + + + + + + E + T
Sbjct: 98 TEVWTDEFHSELDRTLDVPEDHDPDAAE----------EQIRDAHEAGDLGDLRLITHTV 147
Query: 279 KKKRKKKRKKKKNQHHRDV 297
KKK + V
Sbjct: 148 PDAVPSVPKKKPDVMETRV 166
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 28.8 bits (64), Expect = 0.23
Identities = 16/80 (20%), Positives = 24/80 (30%), Gaps = 5/80 (6%)
Query: 223 KKKKKRKKKKKKKKKKKRKKK-----KNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTT 277
K ++ K +K KR + R + R E E + +
Sbjct: 6 SGKPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEK 65
Query: 278 KKKKRKKKRKKKKNQHHRDV 297
KK K K + K Q R
Sbjct: 66 KKAKYKAREAALKAQSERKS 85
>d2j01d1 b.34.5.3 (D:127-273) C-terminal domain of ribosomal protein
L2 {Thermus thermophilus [TaxId: 274]}
Length = 147
Score = 29.4 bits (66), Expect = 0.30
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Query: 225 KKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTS-RGEEEEEKKKKKKKKKKKTTKKKKRK 283
K K + R + H R +N E + + + + K
Sbjct: 72 NADHKNIVLGKAGRSRWLGRRPHVRGAAMNPVDHPHGGGEGRAPRGRPPASPWGWQTKGL 131
Query: 284 KKRKKKK 290
K RK++K
Sbjct: 132 KTRKRRK 138
>d1je5a_ b.40.4.7 (A:) gp2.5 {Bacteriophage T7 [TaxId: 10760]}
Length = 197
Score = 29.6 bits (66), Expect = 0.38
Identities = 6/64 (9%), Positives = 16/64 (25%)
Query: 224 KKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRK 283
++ ++ + + + + + + K K KK K
Sbjct: 63 EEAYAAAVEEYEANPPAVARGKKPLKPYEGDMPFFDNGDGTTTFKFKCYASFQDKKTKET 122
Query: 284 KKRK 287
K
Sbjct: 123 KHIN 126
Score = 29.2 bits (65), Expect = 0.40
Identities = 7/68 (10%), Positives = 18/68 (26%), Gaps = 5/68 (7%)
Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
+ ++ + + KK + + K K + + K+
Sbjct: 64 EAYAAAVEEYEANPPAVARGKKPLKPYE-----GDMPFFDNGDGTTTFKFKCYASFQDKK 118
Query: 283 KKKRKKKK 290
K+ K
Sbjct: 119 TKETKHIN 126
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 314
Score = 29.6 bits (66), Expect = 0.45
Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 6/111 (5%)
Query: 193 HHPNVCIFVVNVYYALISSSISFWIPGFVMKKKKK-RKKKKKKKKK--KKRKKKKNQHHR 249
VC S W + K K K + K+K + K+ +
Sbjct: 184 KDKTVCKEDDIENIPQFFRWFSEWGDDYCQDKTKMIETLKVECKEKPCEDDNCKRKCNSY 243
Query: 250 DVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRKKKRKKKKNQHHRDVWQK 300
WI+ + +EE K+ K+ ++ +K K + + K + + +K
Sbjct: 244 KEWIS---KKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEK 291
Score = 26.9 bits (59), Expect = 3.3
Identities = 10/65 (15%), Positives = 24/65 (36%)
Query: 225 KKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRKK 284
KK+++ K+ K+ + +K N + ++ +K + K++
Sbjct: 248 SKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFKEELHS 307
Query: 285 KRKKK 289
K K
Sbjct: 308 DYKNK 312
Score = 26.6 bits (58), Expect = 3.6
Identities = 12/68 (17%), Positives = 28/68 (41%)
Query: 222 MKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKK 281
K+ +KK++ K+ K+ ++ + ++ ++ S E KK +K + K
Sbjct: 243 YKEWISKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFK 302
Query: 282 RKKKRKKK 289
+ K
Sbjct: 303 EELHSDYK 310
Score = 25.8 bits (56), Expect = 7.1
Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 220 FVMKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKK 279
++ KKK++ K+ K+ ++ ++ + I E +K +K +
Sbjct: 246 WISKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKP----EVYLKKYSEKCSNLNFEDEF 301
Query: 280 KKRKKKRKKKK 290
K+ K K
Sbjct: 302 KEELHSDYKNK 312
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 27.6 bits (61), Expect = 0.52
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 222 MKKKKKRKKKKKK---------KKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKK 272
MKK KK KK +K+ + K + ++ + + + +E +KKK K
Sbjct: 1 MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKY 60
Query: 273 KKKTTKKKKRKKKRKKKKNQHHRDVWQKK 301
+ ++K+ ++ + + H D+ Q
Sbjct: 61 IQDFQREKQEFERNLARFREDHPDLIQNA 89
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 29.0 bits (64), Expect = 0.61
Identities = 8/81 (9%), Positives = 26/81 (32%), Gaps = 8/81 (9%)
Query: 230 KKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKK--------KKKKKKKKTTKKKK 281
+ ++ K++RK + + T + E K++ + ++ +
Sbjct: 103 ARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADI 162
Query: 282 RKKKRKKKKNQHHRDVWQKKY 302
K +K + + +
Sbjct: 163 NVTKADVEKARQQAQIRHQMA 183
>d1xu6a_ g.16.3.1 (A:) Variant surface glycoprotein MITAT 1.2, VSG
221, C-terminal domain {Trypanosoma brucei brucei
[TaxId: 5702]}
Length = 80
Score = 27.2 bits (60), Expect = 0.70
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 5/64 (7%)
Query: 233 KKKKKKKRKKKKNQHHRDVWINRTSRGE-----EEEEKKKKKKKKKKKTTKKKKRKKKRK 287
+K K + ++ + N+ + E + + KK K KK + K
Sbjct: 8 LTQKHKPAESQQQAAETEGSCNKKDQNECKSPCKWHNDAENKKCTLDKEEAKKVADETAK 67
Query: 288 KKKN 291
K
Sbjct: 68 DGKT 71
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 27.8 bits (61), Expect = 0.71
Identities = 11/52 (21%), Positives = 20/52 (38%)
Query: 235 KKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRKKKR 286
K K N R+ + E E++ KK + ++ + K + K R
Sbjct: 62 LGKAKDANNGNLQLRNKEVTWEVLEGEVEKEALKKIIEDQQESLNKWKSKGR 113
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus
influenzae [TaxId: 727]}
Length = 189
Score = 28.6 bits (63), Expect = 0.79
Identities = 24/179 (13%), Positives = 49/179 (27%), Gaps = 35/179 (19%)
Query: 88 LLVALCVMPF--NAIVSLTDEWYFGYFMCDVWNSFDVY------FSTASILHLCCISV-- 137
+L ALCV+ + + D Y ++ +V+ S LH+
Sbjct: 11 ILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWF 70
Query: 138 -------DRYYAIVKPLQYPIIMN--QNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHK 188
+R + VK L ++ + V +S ++ +
Sbjct: 71 FIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRDKLN 130
Query: 189 QYRKHHPN------VCIFVVNVYYALISSSISFW----------IPGFVMKKKKKRKKK 231
+ P + + L + I GF+ K +K +
Sbjct: 131 HHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSKLRKNSLE 189
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 27.5 bits (61), Expect = 0.85
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 12/59 (20%)
Query: 231 KKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRKKKRKKK 289
+K+ KK ++++ Q+ + + K + + K+ KRK
Sbjct: 51 SQKEHYKKLAEEQQRQY------------KVHLDLWVKSLSPQDRAAYKEYISNKRKSG 97
>d1vqop1 a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 143
Score = 27.8 bits (62), Expect = 0.86
Identities = 9/74 (12%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 223 KKKKKRKKKKKKKKKKKRKKKKN--QHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKK 280
++++K++ +K RK K Q+ ++ W +R + + + + +
Sbjct: 63 RERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDL 122
Query: 281 KRKKKRKKKKNQHH 294
K + +
Sbjct: 123 YDKAGGGEFDSVAD 136
Score = 26.2 bits (58), Expect = 3.4
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 256 TSRGEEEEEKKKKKKKKKKKTTKKKKRKKKRKKKKNQHHR 295
SRG E +KK+ +K +K + R+ K
Sbjct: 57 NSRGRARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWES 96
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 86
Score = 26.7 bits (59), Expect = 1.0
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 12/72 (16%)
Query: 231 KKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKK------------KTTK 278
K+ + K + + R EE+ K + +K
Sbjct: 15 KEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARD 74
Query: 279 KKKRKKKRKKKK 290
+KKKRK++K
Sbjct: 75 NYGKKKKRKREK 86
>d2qamc1 b.34.5.3 (C:125-269) C-terminal domain of ribosomal protein
L2 {Escherichia coli [TaxId: 562]}
Length = 145
Score = 27.5 bits (61), Expect = 1.1
Identities = 11/69 (15%), Positives = 18/69 (26%)
Query: 225 KKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRKK 284
+ + K R + R +N E + K + K KK
Sbjct: 72 NAEHMLRVLGKAGAARWRGVRPTVRGTAMNPVDHPHGGGEGRNFGKHPVTPWGVQTKGKK 131
Query: 285 KRKKKKNQH 293
R K+
Sbjct: 132 TRSNKRTDK 140
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 27.1 bits (60), Expect = 1.2
Identities = 3/25 (12%), Positives = 10/25 (40%)
Query: 221 VMKKKKKRKKKKKKKKKKKRKKKKN 245
++K+ + K+ +K+
Sbjct: 77 ILKEVVPEGYEMKRVGDYYVFEKRE 101
Score = 25.2 bits (55), Expect = 4.7
Identities = 3/26 (11%), Positives = 11/26 (42%)
Query: 219 GFVMKKKKKRKKKKKKKKKKKRKKKK 244
G + + + + K+ +K++
Sbjct: 76 GILKEVVPEGYEMKRVGDYYVFEKRE 101
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 28.0 bits (62), Expect = 1.2
Identities = 6/27 (22%), Positives = 19/27 (70%)
Query: 260 EEEEEKKKKKKKKKKKTTKKKKRKKKR 286
+E +++++ ++K ++ K+K +K+R
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 27.2 bits (60), Expect = 2.5
Identities = 6/31 (19%), Positives = 18/31 (58%)
Query: 255 RTSRGEEEEEKKKKKKKKKKKTTKKKKRKKK 285
+ E ++ ++ ++K ++ K K+K K++
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 27.2 bits (60), Expect = 2.8
Identities = 5/27 (18%), Positives = 18/27 (66%)
Query: 261 EEEEKKKKKKKKKKKTTKKKKRKKKRK 287
+E +K+++ ++K ++ K++ +K +
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 26.9 bits (59), Expect = 3.2
Identities = 6/27 (22%), Positives = 19/27 (70%)
Query: 264 EKKKKKKKKKKKTTKKKKRKKKRKKKK 290
++ +K+++ ++K + K K+K +K++
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 26.1 bits (57), Expect = 5.4
Identities = 5/22 (22%), Positives = 15/22 (68%)
Query: 223 KKKKKRKKKKKKKKKKKRKKKK 244
K+++ +K ++ K K++ +K+
Sbjct: 309 KRRETEEKMRRAKLAKEKAEKE 330
Score = 26.1 bits (57), Expect = 5.9
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 221 VMKKKKKRKKKKKKKKKKKRKKKKNQHHR 249
+K+ +KR++ ++K ++ K K+K + R
Sbjct: 303 AVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 26.1 bits (57), Expect = 6.3
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 264 EKKKKKKKKKKKTTKKKKRKKKRKKKKNQ 292
+ K+ +K+++T +K +R K K+K +
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEK 329
>d1f3ub_ b.65.1.1 (B:) TFIIF alpha subunit, Rap74 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 149
Score = 27.5 bits (61), Expect = 1.5
Identities = 9/70 (12%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 220 FVMK--KKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTT 277
+M K + + +R + +++ + + G E K +++ ++KK
Sbjct: 23 NIMAFNAADKVNFATWNQARLERDLSNKKIYQEEEMPESGAGSEFNRKLREEARRKKYGI 82
Query: 278 KKKKRKKKRK 287
K+ + + +
Sbjct: 83 VLKEFRPEDQ 92
>d1an7a_ d.140.1.1 (A:) Ribosomal protein S8 {Thermus thermophilus
[TaxId: 274]}
Length = 136
Score = 27.3 bits (60), Expect = 1.5
Identities = 10/83 (12%), Positives = 28/83 (33%)
Query: 188 KQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKKRKKKKNQH 247
K Y + + ++ P V+ ++ K ++ ++ + +
Sbjct: 44 KGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQVIHHIRRISKPGRRVYVGVKEIPRVRR 103
Query: 248 HRDVWINRTSRGEEEEEKKKKKK 270
+ I TS+G + + +K
Sbjct: 104 GLGIAILSTSKGVLTDREARKLG 126
>d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 133
Score = 26.9 bits (59), Expect = 1.6
Identities = 12/79 (15%), Positives = 31/79 (39%), Gaps = 14/79 (17%)
Query: 216 WIPGFVMKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRT----SRGEEEEEKKKKKKK 271
W V++ R ++ +++ D W+++ ++ ++ +K +K
Sbjct: 28 WHSAEVIQS---RVNDQEGREEFYVHYVGFNRRLDEWVDKNRLALTKTVKDAVQKNSEKY 84
Query: 272 KK-------KKTTKKKKRK 283
+K T+ +KRK
Sbjct: 85 LSELAEQPERKITRNQKRK 103
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 28.0 bits (61), Expect = 1.7
Identities = 13/112 (11%), Positives = 25/112 (22%)
Query: 179 LGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKK 238
+ + + I +WI G + K K K+ K +K K
Sbjct: 104 ALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIK 163
Query: 239 KRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRKKKRKKKK 290
+ + K + + R+ K
Sbjct: 164 LESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNK 215
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 25.9 bits (57), Expect = 1.8
Identities = 3/18 (16%), Positives = 5/18 (27%)
Query: 227 KRKKKKKKKKKKKRKKKK 244
+K KK+
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 25.9 bits (57), Expect = 2.0
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 224 KKKKRKKKKKKKKKKKRK 241
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 109
Score = 26.3 bits (58), Expect = 2.0
Identities = 7/42 (16%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 201 VVNVYYALISSSISFWIPGFV----MKKKKKRKKKKKKKKKK 238
L+S++I+F++ F + +KK + ++
Sbjct: 56 QTIDLNVLLSAAINFFLIAFAVYFLVVLPYNTLRKKGEVEQP 97
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId: 7227]}
Length = 73
Score = 25.5 bits (56), Expect = 2.3
Identities = 5/57 (8%), Positives = 18/57 (31%)
Query: 233 KKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRKKKRKKK 289
++ +++ +V ++K + + K K + K+ +
Sbjct: 16 NSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEWEAKAAKAKDDYDRAVKEFEAN 72
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 27.0 bits (60), Expect = 2.4
Identities = 6/27 (22%), Positives = 20/27 (74%)
Query: 267 KKKKKKKKKTTKKKKRKKKRKKKKNQH 293
+ +K++KK+ T ++K++ + +++K +
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEE 128
Score = 26.6 bits (59), Expect = 3.0
Identities = 6/28 (21%), Positives = 20/28 (71%)
Query: 220 FVMKKKKKRKKKKKKKKKKKRKKKKNQH 247
F ++K++K++ ++KK+ + +++K +
Sbjct: 101 FQLQKEQKKQLTSQEKKQIRLEREKFEE 128
Score = 25.8 bits (57), Expect = 6.6
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 260 EEEEEKKKKKKKKKKKTTKKKKRKKKRK 287
+ ++E+KK+ ++KK + ++ K +
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943)
{Staphylococcus aureus [TaxId: 1280]}
Length = 185
Score = 27.0 bits (58), Expect = 2.5
Identities = 15/70 (21%), Positives = 25/70 (35%)
Query: 231 KKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRKKKRKKKK 290
KK+ K K+ K + E +E+KKK + K T + + K K
Sbjct: 4 KKEIKAYLKQVDKIKDDEEPIKTVGKKIAELDEKKKKLTEDVNSKDTAVRGKAVKDLIKN 63
Query: 291 NQHHRDVWQK 300
++K
Sbjct: 64 ADDRLKEFEK 73
>d1u60a_ e.3.1.2 (A:) Probable glutaminase YbaS {Escherichia coli
[TaxId: 562]}
Length = 309
Score = 27.1 bits (60), Expect = 2.5
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 6/30 (20%)
Query: 109 FGYFMCDVWNSFDVYFSTASILHLCCISVD 138
GY CD + DVY C ++
Sbjct: 177 AGYLYCDAMEACDVYT------RQCSTLLN 200
>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form {Plasmodium
knowlesi [TaxId: 5850]}
Length = 294
Score = 27.3 bits (60), Expect = 2.6
Identities = 13/98 (13%), Positives = 32/98 (32%)
Query: 205 YYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEE 264
I I W ++ + K++ K +K K + + ++
Sbjct: 170 VEPQIYRWIREWGRDYMSELPKEQGKLNEKCASKLYYNNMAICMLPLCHDACKSYDQWIT 229
Query: 265 KKKKKKKKKKKTTKKKKRKKKRKKKKNQHHRDVWQKKY 302
+KKK+ K+ +K + D+ +++
Sbjct: 230 RKKKQWDVLSTKFSSVKKTQKIGTENIATAYDILKQEL 267
>d2nysa1 b.136.1.2 (A:3-119) Uncharacterized protein AGR_C_3712p
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 117
Score = 26.1 bits (58), Expect = 2.7
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 66 VIKH--RKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTD 105
VI+H +++ F + L+F+D L V+P+NAI D
Sbjct: 65 VIQHQFWDMKVTETGFEIGLSFSDTPEKL-VIPYNAIRGFYD 105
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 26.9 bits (59), Expect = 3.0
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 204 VYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKKRKKKK 244
+Y IS+ + + +K++ K K+ R +K
Sbjct: 196 IYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEK 236
Score = 26.9 bits (59), Expect = 3.1
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 266 KKKKKKKKKKTTKKKKRKKKRKKKKNQHHR 295
K +K+R K K+ +
Sbjct: 208 KDNAHNVTVDLEMRKQRNKTTKQVRTIEKI 237
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Length = 180
Score = 26.6 bits (58), Expect = 3.2
Identities = 22/162 (13%), Positives = 50/162 (30%), Gaps = 27/162 (16%)
Query: 88 LLVALCVMPFNAIVSLTDEWYFGYFMC--------DVWNSFDVYFSTASILHLCCISV-- 137
+++ CV+ F A+ L D+ + + W F S++H+ +
Sbjct: 9 VMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWW 68
Query: 138 --------DRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLG--WYTTPDH 187
R + + I + + + G+ ++G W
Sbjct: 69 WYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERD 128
Query: 188 KQYRKHHPN-----VCIFVVNVYYALISSSISFW--IPGFVM 222
Q + I++V ++ L S++ I G +
Sbjct: 129 PQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAV 170
>d1h3za_ b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fission
yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 108
Score = 25.8 bits (56), Expect = 3.2
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 6/70 (8%)
Query: 216 WIPGFVMKKKKKRKKKKKKKKKKKRKKKKNQ---HHRDVWINRTSR---GEEEEEKKKKK 269
W P V+ + K +K K K+ + +W S E + +K
Sbjct: 21 WWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNKEYLWTGSDSLTPLTSEAISQFLEK 80
Query: 270 KKKKKKTTKK 279
K K + K
Sbjct: 81 PKPKTASLIK 90
>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo
sapiens) [TaxId: 9606]}
Length = 200
Score = 26.6 bits (58), Expect = 3.3
Identities = 8/74 (10%), Positives = 23/74 (31%)
Query: 222 MKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKK 281
K+ + + + + ++ R + + + K +K + K
Sbjct: 106 TVKQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKL 165
Query: 282 RKKKRKKKKNQHHR 295
+ + K K H +
Sbjct: 166 KFLEENKIKVMHKQ 179
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 1449
Score = 27.1 bits (59), Expect = 3.3
Identities = 14/77 (18%), Positives = 22/77 (28%)
Query: 218 PGFVMKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTT 277
+K KKR K K + + D SRG + +K K
Sbjct: 123 QALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCGNTQPTIRKDGLKLVG 182
Query: 278 KKKKRKKKRKKKKNQHH 294
KK + + +
Sbjct: 183 SWKKDRATGDADEPELR 199
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 26.4 bits (58), Expect = 3.3
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 223 KKKKKRKKKKKKKKKKKRKKKKN 245
K K K K +++ K + +K+
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRE 24
Score = 24.8 bits (54), Expect = 9.9
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 229 KKKKKKKKKKKRKKKKNQ 246
K K K K ++R K +N+
Sbjct: 2 KNKGKGGKNRRRGKNENE 19
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 25.2 bits (55), Expect = 3.9
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 260 EEEEEKKKKKKKKKKKTTKKKKRKKKRKKKK 290
+E +K + ++K K + R+K + K
Sbjct: 55 FQEAQKLQAMHREKYPNYKYRPRRKAKMLPK 85
>d1vqo31 g.41.8.3 (3:1-92) Ribosomal protein L44e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 92
Score = 25.1 bits (55), Expect = 4.0
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 1/85 (1%)
Query: 217 IPGFVMKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKT 276
+P + ++ + +K R ++ + G + K K K
Sbjct: 3 MPRRFNTYCPHCNEHQEHEVEKVRSGRQTGMKWIDRQRERNSGIGND-GKFSKVPGGDKP 61
Query: 277 TKKKKRKKKRKKKKNQHHRDVWQKK 301
TKK K + + H R+ W+
Sbjct: 62 TKKTDLKYRCGECGKAHLREGWRAG 86
>d2zjro1 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus
radiodurans [TaxId: 1299]}
Length = 94
Score = 25.2 bits (55), Expect = 5.2
Identities = 5/27 (18%), Positives = 14/27 (51%)
Query: 221 VMKKKKKRKKKKKKKKKKKRKKKKNQH 247
V++ + +K +K K + +++ H
Sbjct: 56 VVEHGRGKKIYIRKYKSGVQYRRRTGH 82
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 248
Score = 26.1 bits (57), Expect = 5.3
Identities = 10/51 (19%), Positives = 20/51 (39%)
Query: 228 RKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTK 278
+K + + KK Q + + + + E +K +KK + K K
Sbjct: 106 EQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQK 156
>d1mkia_ e.3.1.2 (A:) Probable glutaminase YbgJ {Bacillus subtilis
[TaxId: 1423]}
Length = 328
Score = 26.0 bits (57), Expect = 5.6
Identities = 6/60 (10%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 109 FGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAI-----VKPLQYPIIMNQNTVLLMLS 163
+ +V + +VY ++ + I P+++ ++ ++ L +
Sbjct: 188 TNFLEAEVEETLEVYLKQCAME-STTEDIALIGLILAHDGYHPIRHEQVIPKDVAKLAKA 246
>d1kvva_ d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 104
Score = 25.1 bits (55), Expect = 6.1
Identities = 8/20 (40%), Positives = 17/20 (85%)
Query: 222 MKKKKKRKKKKKKKKKKKRK 241
+ + +++K+++KK KKKK+K
Sbjct: 85 IAEIREQKREQKKDKKKKKK 104
>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p)
{Escherichia coli [TaxId: 562]}
Length = 113
Score = 24.9 bits (54), Expect = 6.1
Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 16/84 (19%)
Query: 224 KKKKRKKKKKKKKKKKRKKKK--------NQHHRDVWINRTSRG--------EEEEEKKK 267
KK R ++ + ++K ++ +H I E+ ++
Sbjct: 1 KKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQL 60
Query: 268 KKKKKKKKTTKKKKRKKKRKKKKN 291
K K K +R +K
Sbjct: 61 KYTGNKDAAAAVGKAVAERALEKG 84
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 25.8 bits (57), Expect = 6.1
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 220 FVMKKKKKRKKKKKKKKKKKRKKKKNQH 247
F + + +++ K++K K K + +K
Sbjct: 109 FKAQTEARKQMSKEEKLKIKEENEKLLK 136
Score = 25.8 bits (57), Expect = 6.5
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 264 EKKKKKKKKKKKTTKKKKRKKKRKKKK 290
+ + + +K+ K K K +++ K K
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLK 136
Score = 25.4 bits (56), Expect = 7.2
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 260 EEEEEKKKKKKKKKKKTTKKKKRKKKRK 287
+ + E +K+ K++K K++ K ++
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 25.4 bits (56), Expect = 7.6
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 267 KKKKKKKKKTTKKKKRKKKRKKKKNQH 293
K + + +K+ +K++K K K + +K
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLK 136
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta
subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 325
Score = 25.7 bits (56), Expect = 7.4
Identities = 11/45 (24%), Positives = 14/45 (31%), Gaps = 4/45 (8%)
Query: 93 CVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYF--STASILHLCCI 135
+ SL E G F D+W D F + L L
Sbjct: 110 VDKVVAYVQSLQKED--GSFAGDIWGEIDTRFSFCAVATLALLGK 152
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 237
Score = 25.4 bits (55), Expect = 7.6
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 263 EEKKKKKKKKKKKTTKKKKRKKKRKKKKNQHHRDVWQK 300
+ KK + + +KK++ K ++ R +K
Sbjct: 146 SALQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEK 183
>d1nuwa_ e.7.1.1 (A:) Fructose-1,6-bisphosphatase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 328
Score = 25.7 bits (56), Expect = 7.8
Identities = 24/197 (12%), Positives = 55/197 (27%), Gaps = 19/197 (9%)
Query: 70 RKLRIITN-YFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMC----DVWNSFDVYF 124
+KL +++N + L + L + + E Y +C D ++ D
Sbjct: 64 KKLDVLSNDLVINVLKSSFATCVLVSEEDKNAIIVEPEKRGKYVVCFDPLDGSSNIDCLV 123
Query: 125 STASILHLCCI--SVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWY 182
S +I I K P + + +L +++ + +
Sbjct: 124 SIGTIF---GIYRKNSTDEPSEKDALQPGRNLVAAGYALYGSATML--VLAMVNGVNCFM 178
Query: 183 TTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKKRKK 242
P ++ +V I Y++ + P + ++KK
Sbjct: 179 LDPAIGEFILVDRDVKIKKKGSIYSINEGYAKEFDPAI-------TEYIQRKKFPPDNSA 231
Query: 243 KKNQHHRDVWINRTSRG 259
+ + R
Sbjct: 232 PYGARYVGSMVADVHRT 248
>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1, MRG15
{Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 24.1 bits (52), Expect = 8.0
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 232 KKKKKKKKRKKKKNQHHRDVWINRTSRGEEEE------EKKKKKKKKKKKTTKKKKRKKK 285
K K K K+ K H W E + +K+++ +K +++ + K
Sbjct: 24 KCVKVAIKDKQVKYFIHYSGWNKNWDEWVPESRVLKYVDTNLQKQRELQKANQEQYAEGK 83
>d1wvka_ g.82.1.1 (A:) Expressed protein At2g23090/F21P24.15 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 86
Score = 24.4 bits (53), Expect = 8.1
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDV 251
+ + +K K K + + N+ +
Sbjct: 18 AMARAKNLEKAKAAGKGSQLEANKKAMSI 46
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 23.9 bits (51), Expect = 8.6
Identities = 10/62 (16%), Positives = 25/62 (40%)
Query: 229 KKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRKKKRKK 288
+K K+K ++ + + + + K +++ T+KKK K +++
Sbjct: 5 PQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 64
Query: 289 KK 290
K
Sbjct: 65 KM 66
>d2qamr1 b.155.1.1 (R:1-103) Ribosomal protein L21p {Escherichia
coli [TaxId: 562]}
Length = 103
Score = 24.4 bits (53), Expect = 9.1
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 221 VMKKKKKRKKKKKKKKKKKRKKKKNQH 247
V+ + K K K +++K +K+ H
Sbjct: 63 VVAHGRGEKVKIVKFRRRKHYRKQQGH 89
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 25.1 bits (54), Expect = 9.1
Identities = 3/21 (14%), Positives = 11/21 (52%)
Query: 223 KKKKKRKKKKKKKKKKKRKKK 243
K K++ + + + + +K+
Sbjct: 161 KPKREAFLEANRAELVRFQKE 181
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I,
dispensable insert domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 72
Score = 24.0 bits (52), Expect = 9.1
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 261 EEEEKKKKKKKKKKKTTKKKKRKKKRKKK 289
+ K K K K K KK + +KK
Sbjct: 22 RRDLKSAKADAKVMKDAKTKKVVESKKKA 50
>d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus
thermophilus [TaxId: 274]}
Length = 118
Score = 24.7 bits (54), Expect = 9.6
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 228 RKKKKKKKKKKKRKKKKNQHHRDVWINR 255
RK ++K +KK K K R
Sbjct: 8 RKGREKVRKKSKVPALKGAPFRRGVCTV 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.136 0.424
Gapped
Lambda K H
0.267 0.0567 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,205,815
Number of extensions: 61791
Number of successful extensions: 1591
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1082
Number of HSP's successfully gapped: 236
Length of query: 303
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 218
Effective length of database: 1,240,546
Effective search space: 270439028
Effective search space used: 270439028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.6 bits)