BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16863
(1075 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 153 bits (386), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 158/619 (25%), Positives = 257/619 (41%), Gaps = 89/619 (14%)
Query: 348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
+ P FI L + +G L ++ EI+I WY+ KL Y+ Q N +
Sbjct: 4 EPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL 63
Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYK-APFFTKELEAILTEQG-TVS 465
++ V D G +TC AEN+VG S +VLV K K P F ++L+ + G V+
Sbjct: 64 VINKVDHSDVGEYTCKAENSVGAVASS---AVLVIKERKLPPSFARKLKDVHETLGFPVA 120
Query: 466 LECKVMGIPTPQLIWYKDNKKIK---------AGDIFALTANPKDPSSLGTYTCEAVNCM 516
EC++ G Q+ WYKD + +K ++ L D S +G Y C A N +
Sbjct: 121 FECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPL 180
Query: 517 GAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLV 576
G A S++++ L +VP P F + +V +G S +C V
Sbjct: 181 GTASSSAKLT-------LSEHEVP----------PFFDLKPVSVDLALGESGTFKCHV-T 222
Query: 577 PPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQF 636
P I W + Y M ++ + + D G++ C A++ +G K
Sbjct: 223 GTAPIKITWAKDNREIRPGGNYK-MTLVENTATLTVLKVTKGDAGQYTCYASNVAG-KDS 280
Query: 637 SAAYVHVLMPKNYRKPRFVESLKA--VMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPG 694
+A + V P PRF++ L+ ++ D +ECK+ G P + W+KD E++
Sbjct: 281 CSAQLGVQEP-----PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQES 335
Query: 695 DVYQLTGTSSL-------------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLL 741
++++ S+ G Y C A N G A SST L +++
Sbjct: 336 SKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPP---------- 385
Query: 742 LLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKET 801
K P +E LK + E + T P +VSW +D +++ KI+ E
Sbjct: 386 --VFRKKPHPVETLKGADVHLECELQGT------PPFQVSWHKDKRELRSGKKYKIMSEN 437
Query: 802 LGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLS-E 860
+ + I ++ AD E++C A+ND G + L P P+F+++L + +
Sbjct: 438 F-LTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAP-----PRFVKKLSDISTVV 491
Query: 861 GGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTC 910
G V L+ + G ++ WFKD E+ + IS + L G YTC
Sbjct: 492 GEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTC 551
Query: 911 EAHNCMGTTSSSAALLGFE 929
+ N GT A L E
Sbjct: 552 QIKNEAGTQECFATLSVLE 570
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 133/575 (23%), Positives = 237/575 (41%), Gaps = 86/575 (14%)
Query: 2 GIPTPQLIWYKDNKKIKAG---------DIFALTANPKDPSSLGTYTCEAVNCMGAAFST 52
G P ++ WYK++ K+++ ++ +L N D S +G YTC+A N +GA S+
Sbjct: 31 GTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASS 90
Query: 53 SRVI----------ARGQQSFLDNDDVPFN---RAQGDHPIFGNRFR---AINRDGRTE- 95
+ ++ AR + + P R G P+ + ++ + D +
Sbjct: 91 AVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQT 150
Query: 96 --------LNIRRVRRDDGGRYSVTASNESGY--STAKFELSVESQVPDAPAFIRRLHDI 145
L I + + G+Y+ +ASN G S+AK LS E +VP P F + +
Sbjct: 151 SFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLS-EHEVP--PFFDLKPVSV 207
Query: 146 AVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNI 205
+ +G + IK + +N R G ++ + L +
Sbjct: 208 DLALGESGTFKCHVTGTAPIKITWAKDNR---EIRP-------GGNYKMTLVENTATLTV 257
Query: 206 RRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH-DIAVKVGTRARLLV 264
+V + D G+Y+ ASN +G + +L V+ + P FI++L VK R
Sbjct: 258 LKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ----EPPRFIKKLEPSRIVKQDEHTRYEC 313
Query: 265 EIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYS 324
+I EIK + + T Q ++FR + L + + +D G Y+
Sbjct: 314 KIGGSPEIKVLWYKDET-----EIQE-----SSKFRMSFVESVAVLEMYNLSVEDSGDYT 363
Query: 325 VTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWY 384
A N +G +++ L V+ + P F ++ H + G L E++ ++ W+
Sbjct: 364 CEAHNAAGSASSSTSLKVK----EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWH 419
Query: 385 RNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKA 444
++ R+L K Y+ + I + +V D G + C A N VG C +++ P
Sbjct: 420 KDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAP-- 477
Query: 445 YKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKI----------KAGDIF 493
P F K+L I T G V L+ + G + W+KD +I + +I
Sbjct: 478 ---PRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIA 534
Query: 494 ALTANPKDPSSLGTYTCEAVNCMGA--AFSTSRVI 526
L + +P++ G YTC+ N G F+T V+
Sbjct: 535 TLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 12/95 (12%)
Query: 848 PKFLEELKAVLSE-GGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHK----------II 896
P F+E L+ V + G + L+CKV G P+ + W+K+ +L++ +K +I
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVI 65
Query: 897 SGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDK 931
+ D + +G YTC+A N +G +SSA L+ E K
Sbjct: 66 NKVDHSD-VGEYTCKAENSVGAVASSAVLVIKERK 99
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 147/302 (48%), Gaps = 54/302 (17%)
Query: 652 PRFVESLKAVMTDDGLV---SFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL 705
P F + LK V D L +F+C V G + W KDN E++PG Y++T T++L
Sbjct: 5 PPFFD-LKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 706 ----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL 755
G Y C A NV GK S QL +++ P+FI+ L
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE------------------PPRFIKKL 105
Query: 756 KSCQATVNEEF-KFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETLGVCHLKIHALE 813
+ + +E ++ ++ SPE KV W++D+ ++ ES ++ E++ V L+++ L
Sbjct: 106 EPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV--LEMYNLS 163
Query: 814 VADQAEWKCIATNDFGQSITSCFLKLNVPKHY-KKPKFLEELKAVLSEGGAVNLECKVIG 872
V D ++ C A N G + +S LK+ P + KKP +E LK G V+LEC++ G
Sbjct: 164 VEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLK-----GADVHLECELQG 218
Query: 873 VPQPTLKWFKDGRELKAGDIHKIISGEDGTCC---------LGIYTCEAHNCMGTTSSSA 923
P + W KD REL++G +KI+S T +G Y C+A N +G+ +
Sbjct: 219 TPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVG 278
Query: 924 AL 925
++
Sbjct: 279 SI 280
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 118/234 (50%), Gaps = 20/234 (8%)
Query: 296 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR 355
G ++ + L + +V + D G+Y+ ASN +G + +L V+ + P FI++
Sbjct: 49 GGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ----EPPRFIKK 104
Query: 356 LH-DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSL 414
L VK R +I EIK+ WY+++ +++E+ +R + +++ ++S+
Sbjct: 105 LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSV 164
Query: 415 FDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGT-VSLECKVMGI 473
DSG +TC A NA G + S L V P P F K+ + T +G V LEC++ G
Sbjct: 165 EDSGDYTCEAHNAAGSASSSTSLKVKEP-----PVFRKKPHPVETLKGADVHLECELQGT 219
Query: 474 PTPQLIWYKDNKKIKAGDIFALTAN---------PKDPSSLGTYTCEAVNCMGA 518
P Q+ W+KD +++++G + + + D + +G Y C+A N +G+
Sbjct: 220 PPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS 273
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 127/294 (43%), Gaps = 38/294 (12%)
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL 409
P F + + + +G + IKI W +++R++ Y+ N + +
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 65
Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEA--ILTEQGTVSLE 467
V+ D+G++TC A N G+ CS +L V P P F K+LE I+ + E
Sbjct: 66 LKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP-----PRFIKKLEPSRIVKQDEHTRYE 120
Query: 468 CKVMGIPTPQLIWYKDNKKIKAGDIF---------ALTANPKDPSSLGTYTCEAVNCMGA 518
CK+ G P +++WYKD +I+ F L G YTCEA N G+
Sbjct: 121 CKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS 180
Query: 519 AFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPP 578
A S++ + + P+F K+ V+ G LEC++ P
Sbjct: 181 ASSSTSLKVK--------------------EPPVFRKKPHPVETLKGADVHLECELQGTP 220
Query: 579 WPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSG 632
P + W+ + + + KY IM++ SI I +++ D GE++C A++ G
Sbjct: 221 -PFQVSWHKDKRELRSGKKYKIMSENFLT-SIHILNVDSADIGEYQCKASNDVG 272
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 105/247 (42%), Gaps = 21/247 (8%)
Query: 189 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR 248
G ++ + L + +V + D G+Y+ ASN +G + +L V+ + P FI++
Sbjct: 49 GGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ----EPPRFIKK 104
Query: 249 LH-DIAVKVGTRARLLVEIRSPTEIKCQFDLNNT-IPFSFRAQGDHPIFGNRFRAINRDG 306
L VK R +I EIK + + T I S ++FR +
Sbjct: 105 LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQES-----------SKFRMSFVES 153
Query: 307 RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTR 366
L + + +D G Y+ A N +G +++ L V+ + P F ++ H + G
Sbjct: 154 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK----EPPVFRKKPHPVETLKGAD 209
Query: 367 ARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN 426
L E++ ++ W+++ R+L K Y+ + I + +V D G + C A N
Sbjct: 210 VHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASN 269
Query: 427 AVGRSHC 433
VG C
Sbjct: 270 DVGSYTC 276
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 130/312 (41%), Gaps = 57/312 (18%)
Query: 444 AYKAPFFTKE---LEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALT--AN 498
A PFF + ++ L E GT +C V G ++ W KDN++I+ G + +T N
Sbjct: 2 AMAPPFFDLKPVSVDLALGESGT--FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN 59
Query: 499 PKDPSSL-------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAP 551
+ L G YTC A N G ++++ G Q P
Sbjct: 60 TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL---GVQE-----------------PP 99
Query: 552 IFIKEVENVK-AKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSI 610
FIK++E + K EC++ P + + WY E ++ S K+ M+ +
Sbjct: 100 RFIKKLEPSRIVKQDEHTRYECKIGGSPEIK-VLWYKDETEIQESSKFR-MSFVESVAVL 157
Query: 611 EINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRK-PRFVESLKAVMTDDGLVS 669
E+ L D G++ C A +++ S+ + V P +RK P VE+LK V
Sbjct: 158 EMYNLSVEDSGDYTCEAHNAA-GSASSSTSLKVKEPPVFRKKPHPVETLKGAD-----VH 211
Query: 670 FECKVVGFPTPTLQWFKDNEELKPGDVYQLTG-------------TSSLGSYCCVAKNVM 716
EC++ G P + W KD EL+ G Y++ ++ +G Y C A N +
Sbjct: 212 LECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDV 271
Query: 717 GKAESSTQLTIE 728
G +T++
Sbjct: 272 GSYTCVGSITLK 283
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 32/186 (17%)
Query: 748 APKFIEGLK--SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVK--ILKETLG 803
AP F + LK S + E F V+ + K++W +D++++ N K +++ T
Sbjct: 4 APPFFD-LKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 804 VCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKA--VLSEG 861
+ LK+ D ++ C A+N G+ S L + P P+F+++L+ ++ +
Sbjct: 63 LTVLKVTK---GDAGQYTCYASNVAGKDSCSAQLGVQEP-----PRFIKKLEPSRIVKQD 114
Query: 862 GAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKI-------------ISGEDGTCCLGIY 908
ECK+ G P+ + W+KD E++ ++ +S ED G Y
Sbjct: 115 EHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDS----GDY 170
Query: 909 TCEAHN 914
TCEAHN
Sbjct: 171 TCEAHN 176
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 109/267 (40%), Gaps = 35/267 (13%)
Query: 82 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR 141
G ++ + L + +V + D G+Y+ ASN +G + +L V+ + P FI++
Sbjct: 49 GGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ----EPPRFIKK 104
Query: 142 LH-DIAVKVGTRARLLVEIRSPTEIKCQFDLNNT-IPFSFRAQGDHPIFGNRFRAINRDG 199
L VK R +I EIK + + T I S ++FR +
Sbjct: 105 LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQES-----------SKFRMSFVES 153
Query: 200 RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTR 259
L + + +D G Y+ A N +G +++ L V+ + P F ++ H + G
Sbjct: 154 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK----EPPVFRKKPHPVETLKGAD 209
Query: 260 ARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF--GNRFRAINRDGRTELNIRRVRR 317
L + +L T PF D G +++ ++ + T ++I V
Sbjct: 210 VHL------------ECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDS 257
Query: 318 DDGGRYSVTASNESGYSTAKFELSVES 344
D G Y ASN+ G T +++++
Sbjct: 258 ADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 62/160 (38%), Gaps = 31/160 (19%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIF---------ALTANPKDPSSLGTYTCEAVNCMGAAFST 52
G P +++WYKD +I+ F L G YTCEA N G+A S+
Sbjct: 125 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSS 184
Query: 53 SRVIARGQQSF---------LDNDDVPFN-RAQGDHPI------------FGNRFRAINR 90
+ + + F L DV QG P G +++ ++
Sbjct: 185 TSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSE 244
Query: 91 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 130
+ T ++I V D G Y ASN+ G T +++++
Sbjct: 245 NFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 109 bits (273), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 146/302 (48%), Gaps = 54/302 (17%)
Query: 652 PRFVESLKAVMTDDGLV---SFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL 705
P F + LK V D L +F+C V G + W KDN E++PG Y++T T++L
Sbjct: 5 PPFFD-LKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 706 ----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL 755
G Y C A NV GK S QL ++ P+FI+ L
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ------------------APPRFIKKL 105
Query: 756 KSCQATVNEEF-KFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETLGVCHLKIHALE 813
+ + +E ++ ++ SPE KV W++D+ ++ ES ++ E++ V L+++ L
Sbjct: 106 EPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV--LEMYNLS 163
Query: 814 VADQAEWKCIATNDFGQSITSCFLKLNVPKHY-KKPKFLEELKAVLSEGGAVNLECKVIG 872
V D ++ C A N G + +S LK+ P + KKP +E LK G V+LEC++ G
Sbjct: 164 VEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLK-----GADVHLECELQG 218
Query: 873 VPQPTLKWFKDGRELKAGDIHKIISGEDGTCC---------LGIYTCEAHNCMGTTSSSA 923
P + W KD REL++G +KI+S T +G Y C+A N +G+ +
Sbjct: 219 TPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVG 278
Query: 924 AL 925
++
Sbjct: 279 SI 280
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 118/234 (50%), Gaps = 20/234 (8%)
Query: 296 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR 355
G ++ + L + +V + D G+Y+ ASN +G + +L V++ P FI++
Sbjct: 49 GGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQA----PPRFIKK 104
Query: 356 LH-DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSL 414
L VK R +I EIK+ WY+++ +++E+ +R + +++ ++S+
Sbjct: 105 LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSV 164
Query: 415 FDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGT-VSLECKVMGI 473
DSG +TC A NA G + S L V P P F K+ + T +G V LEC++ G
Sbjct: 165 EDSGDYTCEAHNAAGSASSSTSLKVKEP-----PVFRKKPHPVETLKGADVHLECELQGT 219
Query: 474 PTPQLIWYKDNKKIKAGDIFALTAN---------PKDPSSLGTYTCEAVNCMGA 518
P Q+ W+KD +++++G + + + D + +G Y C+A N +G+
Sbjct: 220 PPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS 273
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 127/294 (43%), Gaps = 38/294 (12%)
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL 409
P F + + + +G + IKI W +++R++ Y+ N + +
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 65
Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEA--ILTEQGTVSLE 467
V+ D+G++TC A N G+ CS +L V P P F K+LE I+ + E
Sbjct: 66 LKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAP-----PRFIKKLEPSRIVKQDEHTRYE 120
Query: 468 CKVMGIPTPQLIWYKDNKKIKAGDIF---------ALTANPKDPSSLGTYTCEAVNCMGA 518
CK+ G P +++WYKD +I+ F L G YTCEA N G+
Sbjct: 121 CKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS 180
Query: 519 AFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPP 578
A S++ + + P+F K+ V+ G LEC++ P
Sbjct: 181 ASSSTSLKVK--------------------EPPVFRKKPHPVETLKGADVHLECELQGTP 220
Query: 579 WPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSG 632
P + W+ + + + KY IM++ SI I +++ D GE++C A++ G
Sbjct: 221 -PFQVSWHKDKRELRSGKKYKIMSENFLT-SIHILNVDSADIGEYQCKASNDVG 272
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 19/246 (7%)
Query: 189 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR 248
G ++ + L + +V + D G+Y+ ASN +G + +L V++ P FI++
Sbjct: 49 GGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQA----PPRFIKK 104
Query: 249 LH-DIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGR 307
L VK R +I EIK + + T Q ++FR +
Sbjct: 105 LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDET-----EIQES-----SKFRMSFVESV 154
Query: 308 TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRA 367
L + + +D G Y+ A N +G +++ L V+ + P F ++ H + G
Sbjct: 155 AVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK----EPPVFRKKPHPVETLKGADV 210
Query: 368 RLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA 427
L E++ ++ W+++ R+L K Y+ + I + +V D G + C A N
Sbjct: 211 HLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASND 270
Query: 428 VGRSHC 433
VG C
Sbjct: 271 VGSYTC 276
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 131/312 (41%), Gaps = 57/312 (18%)
Query: 444 AYKAPFFTKE---LEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALT--AN 498
A PFF + ++ L E GT +C V G ++ W KDN++I+ G + +T N
Sbjct: 2 AMAPPFFDLKPVSVDLALGESGT--FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN 59
Query: 499 PKDPSSL-------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAP 551
+ L G YTC A N G ++++ G Q+ P
Sbjct: 60 TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL---GVQA-----------------PP 99
Query: 552 IFIKEVENVK-AKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSI 610
FIK++E + K EC++ P + + WY E ++ S K+ M+ +
Sbjct: 100 RFIKKLEPSRIVKQDEHTRYECKIGGSPEIK-VLWYKDETEIQESSKFR-MSFVESVAVL 157
Query: 611 EINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRK-PRFVESLKAVMTDDGLVS 669
E+ L D G++ C A +++ S+ + V P +RK P VE+LK V
Sbjct: 158 EMYNLSVEDSGDYTCEAHNAA-GSASSSTSLKVKEPPVFRKKPHPVETLKGAD-----VH 211
Query: 670 FECKVVGFPTPTLQWFKDNEELKPGDVYQLTG-------------TSSLGSYCCVAKNVM 716
EC++ G P + W KD EL+ G Y++ ++ +G Y C A N +
Sbjct: 212 LECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDV 271
Query: 717 GKAESSTQLTIE 728
G +T++
Sbjct: 272 GSYTCVGSITLK 283
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 32/186 (17%)
Query: 748 APKFIEGLK--SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVK--ILKETLG 803
AP F + LK S + E F V+ + K++W +D++++ N K +++ T
Sbjct: 4 APPFFD-LKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 804 VCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKA--VLSEG 861
+ LK+ D ++ C A+N G+ S L + P P+F+++L+ ++ +
Sbjct: 63 LTVLKVTK---GDAGQYTCYASNVAGKDSCSAQLGVQAP-----PRFIKKLEPSRIVKQD 114
Query: 862 GAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKI-------------ISGEDGTCCLGIY 908
ECK+ G P+ + W+KD E++ ++ +S ED G Y
Sbjct: 115 EHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDS----GDY 170
Query: 909 TCEAHN 914
TCEAHN
Sbjct: 171 TCEAHN 176
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 109/267 (40%), Gaps = 35/267 (13%)
Query: 82 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR 141
G ++ + L + +V + D G+Y+ ASN +G + +L V++ P FI++
Sbjct: 49 GGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQA----PPRFIKK 104
Query: 142 LH-DIAVKVGTRARLLVEIRSPTEIKCQFDLNNT-IPFSFRAQGDHPIFGNRFRAINRDG 199
L VK R +I EIK + + T I S ++FR +
Sbjct: 105 LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQES-----------SKFRMSFVES 153
Query: 200 RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTR 259
L + + +D G Y+ A N +G +++ L V+ + P F ++ H + G
Sbjct: 154 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK----EPPVFRKKPHPVETLKGAD 209
Query: 260 ARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF--GNRFRAINRDGRTELNIRRVRR 317
L + +L T PF D G +++ ++ + T ++I V
Sbjct: 210 VHL------------ECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDS 257
Query: 318 DDGGRYSVTASNESGYSTAKFELSVES 344
D G Y ASN+ G T +++++
Sbjct: 258 ADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/265 (19%), Positives = 101/265 (38%), Gaps = 50/265 (18%)
Query: 7 QLIWYKDNKKIKAGDIFALT--ANPKDPSSL-------GTYTCEAVNCMGAAFSTSRVIA 57
++ W KDN++I+ G + +T N + L G YTC A N G ++++
Sbjct: 36 KITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 95
Query: 58 RGQQSFLDNDDVPFNRAQGDHPIF-----------------------GNRFRAINRDGRT 94
+ F+ + Q +H + ++FR +
Sbjct: 96 QAPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA 155
Query: 95 ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRAR 154
L + + +D G Y+ A N +G +++ L V+ + P F ++ H + G
Sbjct: 156 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK----EPPVFRKKPHPVETLKGADVH 211
Query: 155 LLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF--GNRFRAINRDGRTELNIRRVRRDD 212
L + +L T PF D G +++ ++ + T ++I V D
Sbjct: 212 L------------ECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSAD 259
Query: 213 GGRYSVTASNESGYSTAKFELSVES 237
G Y ASN+ G T +++++
Sbjct: 260 IGEYQCKASNDVGSYTCVGSITLKA 284
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 62/160 (38%), Gaps = 31/160 (19%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIF---------ALTANPKDPSSLGTYTCEAVNCMGAAFST 52
G P +++WYKD +I+ F L G YTCEA N G+A S+
Sbjct: 125 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSS 184
Query: 53 SRVIARGQQSF---------LDNDDVPFN-RAQGDHPI------------FGNRFRAINR 90
+ + + F L DV QG P G +++ ++
Sbjct: 185 TSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSE 244
Query: 91 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 130
+ T ++I V D G Y ASN+ G T +++++
Sbjct: 245 NFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 144/336 (42%), Gaps = 53/336 (15%)
Query: 416 DSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIP 474
D G + C A S S V+V + F + E+I G TV L+C+V+G P
Sbjct: 93 DEGLYQCEASLGDSGSIISRTAKVMVAGPLR---FLSQTESITAFMGDTVLLKCEVIGDP 149
Query: 475 TPQLIWYKDNKKIKA--GDI-------FALTANPKDPSSLGTYTCEAVNCMGAAFSTSRV 525
P + W K+ + + GD AL + P G Y C A
Sbjct: 150 MPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSA------------- 196
Query: 526 IARGQQSFLDNDDVPFNSLMPPG--PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSI 583
R S ++ L PG F++ NV A G A+LEC V P P S
Sbjct: 197 --RNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYP-PPSF 253
Query: 584 YWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSA-AYVH 642
W E V++ K + + LGG ++ I+ + D G + CV T + + SA A +
Sbjct: 254 TWLRGEEVIQLRSKKYSL---LGGSNLLISNVTDDDSGTYTCVVTYKN--ENISASAELT 308
Query: 643 VLMPKNYRKPRFVESLKAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTG 701
VL+P P F+ + + + + FEC V G P PT+ W K+ + + P D +Q+ G
Sbjct: 309 VLVP-----PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVG 363
Query: 702 TSSL----------GSYCCVAKNVMGKAESSTQLTI 727
S+L G Y CVA+N G A+SS QL +
Sbjct: 364 GSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 135/329 (41%), Gaps = 44/329 (13%)
Query: 619 DDGEWKCVAT-SSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGF 677
D+G ++C A+ SG A V V P + ES+ A M D V +C+V+G
Sbjct: 93 DEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQ--TESITAFMGDT--VLLKCEVIGD 148
Query: 678 PTPTLQWFKDNEELKP--GD---VYQLTGTSSL--------GSYCCVAKNVMGKAESSTQ 724
P PT+ W K+ ++L P GD V +G + G Y C A+N +ST+
Sbjct: 149 PMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARN-----PASTR 203
Query: 725 LTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFR 784
E LS+ ++ F++ + A ++ VS P P +W R
Sbjct: 204 TGNEAEVRILSDPGL------HRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLR 257
Query: 785 DDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKH 844
++V++ + K LG +L I + D + C+ T S L + VP
Sbjct: 258 G-EEVIQLRSKKY--SLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVP-- 312
Query: 845 YKKPKFLEELKAVLS-EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTC 903
P FL + + E + EC V G P PT+ W K+G + D +I+ G +
Sbjct: 313 ---PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRI 369
Query: 904 C------LGIYTCEAHNCMGTTSSSAALL 926
G Y C A N G SSA L+
Sbjct: 370 LGVVKSDEGFYQCVAENEAGNAQSSAQLI 398
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 121/314 (38%), Gaps = 38/314 (12%)
Query: 236 ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTE-------IKCQF--DLNNTIPFSF 286
E+ + D+ + I R V V R L + S T +KC+ D TI +
Sbjct: 100 EASLGDSGSIISR--TAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQK 157
Query: 287 RAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV 346
Q +PI G+ + G L I R++ D G Y +A N + T E ++
Sbjct: 158 NQQDLNPIPGDSRVVVLPSG--ALQISRLQPGDSGVYRCSARNPASTRTGN---EAEVRI 212
Query: 347 PDAPA------FIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLE-ENKIYRTQ 399
P F++R ++ G A L + W R + ++ +K Y
Sbjct: 213 LSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLL 272
Query: 400 HDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILT 459
N +S+V+ DSG +TC+ S EL+VLVP P+F +
Sbjct: 273 GGSNLL---ISNVTDDDSGTYTCVVTYKNENISASAELTVLVP-----PWFLNHPSNLYA 324
Query: 460 -EQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPK------DPSSLGTYTCEA 512
E + EC V G P P + W K+ + D F + S G Y C A
Sbjct: 325 YESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVA 384
Query: 513 VNCMGAAFSTSRVI 526
N G A S++++I
Sbjct: 385 ENEAGNAQSSAQLI 398
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/324 (21%), Positives = 124/324 (38%), Gaps = 31/324 (9%)
Query: 129 ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTE-------IKCQF--DLNNTIPFSF 179
E+ + D+ + I R V V R L + S T +KC+ D TI +
Sbjct: 100 EASLGDSGSIISR--TAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQK 157
Query: 180 RAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV 239
Q +PI G+ + G L I R++ D G Y +A N + T E ++
Sbjct: 158 NQQDLNPIPGDSRVVVLPSG--ALQISRLQPGDSGVYRCSARNPASTRTGN---EAEVRI 212
Query: 240 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRF 299
P R+L+ + R ++ I + + ++ P SF + R
Sbjct: 213 LSDPGLHRQLYFL-----QRPSNVIAIEGKDAV-LECCVSGYPPPSFTWLRGEEVIQLRS 266
Query: 300 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDI 359
+ + G + L I V DD G Y+ + ++ +A EL+V VP P F+ ++
Sbjct: 267 KKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTV--LVP--PWFLNHPSNL 322
Query: 360 AVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGR 419
+ ++W +N + + ++ N + V D G
Sbjct: 323 YAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRIL---GVVKSDEGF 379
Query: 420 WTCLAENAVGRSHCSCELSVLVPK 443
+ C+AEN G + S +L +VPK
Sbjct: 380 YQCVAENEAGNAQSSAQL--IVPK 401
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 21/146 (14%)
Query: 92 GRTELNIRRVRRDDGGRYS--VTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKV 149
G + L I V DD G Y+ VT NE+ ++A+ + V + P+ + + +
Sbjct: 273 GGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDI-- 330
Query: 150 GTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVR 209
E +C ++ GD I + F+ + G + L I V
Sbjct: 331 --------------EFECAVSGKPVPTVNWMKNGDVVIPSDYFQIV---GGSNLRILGVV 373
Query: 210 RDDGGRYSVTASNESGYSTAKFELSV 235
+ D G Y A NE+G + + +L V
Sbjct: 374 KSDEGFYQCVAENEAGNAQSSAQLIV 399
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 124/551 (22%), Positives = 211/551 (38%), Gaps = 95/551 (17%)
Query: 416 DSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELE----AILTEQGTVSLECKVM 471
DSG++ C+ N+VG L+V P + K T+ ++ A+ T C+
Sbjct: 317 DSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFT--------CQYT 368
Query: 472 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQ 531
G P + W KD K I + + K G Y C N +A +++ + G+
Sbjct: 369 GNPIKTVSWMKDGKAIGHSESVLRIESVKKEDK-GMYQCFVRNDRESAEASAELKLGGR- 426
Query: 532 SFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV 591
F+ P+ + + + G S L+C P P I W
Sbjct: 427 ---------FDP-------PVIRQAFQEETMEPGPSVFLKCVAGGNPTPE-ISWELDGKK 469
Query: 592 VEASDKY----HIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPK 647
+ +D+Y ++ +G + I + A D G +KC+A S GV + SA +P
Sbjct: 470 IANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP- 528
Query: 648 NYRKPRFVESL--KAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL 705
++ + KA++ + L+ C V G+P ++ W +DN L ++ +L
Sbjct: 529 ------YIRQMEKKAIVAGETLI-VTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTL 581
Query: 706 -----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEG 754
+Y CVAKN G + S E ++++L F EG
Sbjct: 582 IIENVERNSDQATYTCVAKNQEGYSARG------------SLEVQVMVLPRIIPFAFEEG 629
Query: 755 LKSCQATVNEEFKFTVQVSISPEP-KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALE 813
A V + V P + W D Q + E + + L I A+E
Sbjct: 630 ----PAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVE 685
Query: 814 VADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGV 873
+ + C A N G + L + VP + LE ++G +ECK G
Sbjct: 686 ASHAGNFTCHARNLAGHQQFTTPLNVYVPPRW----ILEPTDKAFAQGSDAKVECKADGF 741
Query: 874 PQPTLKWFK-------DGRELKAGDIHKIISGEDGTCCL--------GIYTCEAHNCMGT 918
P+P + W K + ++LK D ++ E+GT + G Y CEA N +G+
Sbjct: 742 PKPQVTWKKAVGDTPGEYKDLKKSDNIRV---EEGTLHVDNIQKTNEGYYLCEAINGIGS 798
Query: 919 TSSSAALLGFE 929
S+ ++ +
Sbjct: 799 GLSAVIMISVQ 809
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 123/552 (22%), Positives = 215/552 (38%), Gaps = 87/552 (15%)
Query: 203 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 262
L I+ +D G+Y +N G + + L+V AP ++ K+ +
Sbjct: 308 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT-----AP--------LSAKIDPPTQT 354
Query: 263 LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGR 322
V+ P CQ+ N S+ G +AI + L I V+++D G
Sbjct: 355 -VDFGRPAVFTCQYTGNPIKTVSWMKDG---------KAIGHS-ESVLRIESVKKEDKGM 403
Query: 323 YSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL-LVEIRSPTEIKI 381
Y N+ + A EL + + D P + + ++ G L V +PT +I
Sbjct: 404 YQCFVRNDRESAEASAELKLGGRF-DPPVIRQAFQEETMEPGPSVFLKCVAGGNPTP-EI 461
Query: 382 HWYRNDRKLEENKIYR-----TQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCE 436
W + +K+ N Y+ T + +++++SV D G + C+A++ VG + S +
Sbjct: 462 SWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAK 521
Query: 437 LSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKI---KAGDIF 493
L+V Y P+ + + + T+ + C V G P ++W +DN+ + + +F
Sbjct: 522 LNV-----YGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVF 576
Query: 494 A----LTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGP 549
+ N + S TYTC +A+ Q+ + + ++ P
Sbjct: 577 PNGTLIIENVERNSDQATYTC---------------VAKNQEGYSARGSLEVQVMVLPRI 621
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
P +E A++G L C V P +I W + G G
Sbjct: 622 IPFAFEE---GPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSV 678
Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKN-YRKPRFV-ESLKAVMTDDGL 667
+ I +EA G + C A + +G +QF+ P N Y PR++ E
Sbjct: 679 LTIEAVEASHAGNFTCHARNLAGHQQFTT-------PLNVYVPPRWILEPTDKAFAQGSD 731
Query: 668 VSFECKVVGFPTPTLQWFK-------DNEELKPGDVYQL-TGT--------SSLGSYCCV 711
ECK GFP P + W K + ++LK D ++ GT ++ G Y C
Sbjct: 732 AKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCE 791
Query: 712 AKNVMGKAESST 723
A N +G S+
Sbjct: 792 AINGIGSGLSAV 803
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 124/566 (21%), Positives = 208/566 (36%), Gaps = 115/566 (20%)
Query: 446 KAPFFTKELEAIL--TEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD-- 501
K P F KE + + +ECK G P P++IW + + GD+ L D
Sbjct: 37 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGT-AVGDVPGLRQISSDGK 95
Query: 502 ----PSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEV 557
P Y E + A +AR Q + + DV +++ A + +V
Sbjct: 96 LVFPPFRAEDYRQEVHAQVYAC------LARNQFGSIISRDVHVRAVV----AQYYEADV 145
Query: 558 ENVKAKIGTSAILECQV--LVPPWPRSIYWYNKE-----GVVEASDKYHIMADGLGGYSI 610
G SA+++C + V + + W+ E E KY ++ G
Sbjct: 146 NKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG------ 199
Query: 611 EINYLEAVDDGEWKCVATSS----SGVKQFSAAYVHVLM--PKNYRKPRFVESLKAVM-- 662
E++ E + +K + +G + SA +++ P + P+ V K M
Sbjct: 200 ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKT 259
Query: 663 -TDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD-------VYQLTGTSSL--------G 706
+ ++ C G+P P +W+K E V Q++GT + G
Sbjct: 260 YSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSG 319
Query: 707 SYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT-VNEE 765
Y CV N +G T LT+ AP + Q
Sbjct: 320 KYLCVVNNSVGGESVETVLTV-------------------TAPLSAKIDPPTQTVDFGRP 360
Query: 766 FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT 825
FT Q + +P VSW +D + + S++V L+I +++ D+ ++C
Sbjct: 361 AVFTCQYTGNPIKTVSWMKDGKAIGHSESV-----------LRIESVKKEDKGMYQCFVR 409
Query: 826 NDFGQSITSCFLKLNVPKHYKKPKFLEELKA-VLSEGGAVNLECKVIGVPQPTLKWFKDG 884
ND + S LKL + P + + + G +V L+C G P P + W DG
Sbjct: 410 NDRESAEASAELKLG--GRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDG 467
Query: 885 RELKAGDIHKI------------------ISGEDGTCCLGIYTCEAHNCMGTTSSSAAL- 925
+++ D +++ + DG G+Y C A + +G SA L
Sbjct: 468 KKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDG----GLYKCIAKSKVGVAEHSAKLN 523
Query: 926 -LGFEDKSQIE-KAEEGKKALIVKDP 949
G Q+E KA + LIV P
Sbjct: 524 VYGLPYIRQMEKKAIVAGETLIVTCP 549
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 96/468 (20%), Positives = 174/468 (37%), Gaps = 90/468 (19%)
Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVS 465
+ + SV D G + C N + S EL + + P + + E G +V
Sbjct: 391 LRIESVKKEDKGMYQCFVRNDRESAEASAELKL--GGRFDPPVIRQAFQEETMEPGPSVF 448
Query: 466 LECKVMGIPTPQLIWYKDNKKIKAGDIFA----LTANPKDPSSL----------GTYTCE 511
L+C G PTP++ W D KKI D + +T N S L G Y C
Sbjct: 449 LKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCI 508
Query: 512 AVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILE 571
A + +G A ++++ G +P +I+++E G + I+
Sbjct: 509 AKSKVGVAEHSAKLNVYG---------------LP------YIRQMEKKAIVAGETLIVT 547
Query: 572 CQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSS 631
C V P SI W + + K + +G I N D + CVA +
Sbjct: 548 CPVAGYPI-DSIVWERDNRALPINRKQKVFPNGT---LIIENVERNSDQATYTCVAKNQE 603
Query: 632 GVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTP-TLQWFKDNEE 690
G + V V++ F E V ++ C V G P + W D +
Sbjct: 604 GYSARGSLEVQVMVLPRIIPFAFEEGPAQV---GQYLTLHCSVPGGDLPLNIDWTLDGQA 660
Query: 691 L------------KPGDVYQLTGT--SSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSE 736
+ + G V + S G++ C A+N+ G + +T L +
Sbjct: 661 ISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNV-------YV 713
Query: 737 EDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFR-------DDQQV 789
+ +L +KA F +G + K + P+P+V+W + + + +
Sbjct: 714 PPRWILEPTDKA--FAQG---------SDAKVECKADGFPKPQVTWKKAVGDTPGEYKDL 762
Query: 790 VESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFL 837
+SDN+++ + T L + ++ ++ + C A N G +++ +
Sbjct: 763 KKSDNIRVEEGT-----LHVDNIQKTNEGYYLCEAINGIGSGLSAVIM 805
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 77/359 (21%), Positives = 137/359 (38%), Gaps = 54/359 (15%)
Query: 84 RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 143
++ +N D + LNI V +DGG Y A ++ G + +L+V +P +IR++
Sbjct: 480 QYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYG-LP----YIRQME 534
Query: 144 DIAVKVGTRARLLVEIRS-PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE 202
A+ G + + P + N +P NR + + +G
Sbjct: 535 KKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPI------------NRKQKVFPNG--T 580
Query: 203 LNIRRVRRD-DGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR-RLHDIAVKVGTRA 260
L I V R+ D Y+ A N+ GYS S+E QV P I + +VG
Sbjct: 581 LIIENVERNSDQATYTCVAKNQEGYSARG---SLEVQVMVLPRIIPFAFEEGPAQVGQYL 637
Query: 261 RLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDG 320
L + DL I ++ Q G + R G L I V
Sbjct: 638 TLHCSVPG-------GDLPLNIDWTLDGQAISEDLGITTSRVGRRGSV-LTIEAVEASHA 689
Query: 321 GRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIK 380
G ++ A N +G+ +F + VP P +I D A G+ A++ + + +
Sbjct: 690 GNFTCHARNLAGHQ--QFTTPLNVYVP--PRWILEPTDKAFAQGSDAKVECKADGFPKPQ 745
Query: 381 IHW----------YRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG 429
+ W Y++ +K + ++ +G + + ++ + G + C A N +G
Sbjct: 746 VTWKKAVGDTPGEYKDLKKSDNIRV----EEGTLH---VDNIQKTNEGYYLCEAINGIG 797
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 109/295 (36%), Gaps = 49/295 (16%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFA----LTANPKDPSSL----------GTYTCEAVNCMG 47
G PTP++ W D KKI D + +T N S L G Y C A + +G
Sbjct: 455 GNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVG 514
Query: 48 AAFSTSRVIARG--------QQSFLDNDDVPFNRAQGDHPIFG------NRFRAINRDGR 93
A ++++ G +++ + + + +PI NR INR +
Sbjct: 515 VAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQK 574
Query: 94 T----ELNIRRVRRD-DGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR-RLHDIAV 147
L I V R+ D Y+ A N+ GYS S+E QV P I +
Sbjct: 575 VFPNGTLIIENVERNSDQATYTCVAKNQEGYSARG---SLEVQVMVLPRIIPFAFEEGPA 631
Query: 148 KVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRR 207
+VG L + DL I ++ Q G + R G L I
Sbjct: 632 QVGQYLTLHCSVPG-------GDLPLNIDWTLDGQAISEDLGITTSRVGRRGSV-LTIEA 683
Query: 208 VRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 262
V G ++ A N +G+ +F + VP P +I D A G+ A++
Sbjct: 684 VEASHAGNFTCHARNLAGHQ--QFTTPLNVYVP--PRWILEPTDKAFAQGSDAKV 734
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 98/194 (50%), Gaps = 15/194 (7%)
Query: 745 NNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETL-- 802
+AP F + L+S F +S P P+VSWFRD QV+ + + ++ +
Sbjct: 2 TTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDG-QVISTSTLPGVQISFSD 60
Query: 803 GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEG 861
G L I A+ A+ + ATN GQ+ ++ +L V P F++ L+++ + +G
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATSTA--ELLVKAETAPPNFVQRLQSMTVRQG 118
Query: 862 GAVNLECKVIGVPQPTLKWFKDGRELKA---------GDIHKIISGEDGTCCLGIYTCEA 912
V L+ +V G+P P +K+++DG E+++ GD++ ++ E G Y+ A
Sbjct: 119 SQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNA 178
Query: 913 HNCMGTTSSSAALL 926
N +G +S+A LL
Sbjct: 179 TNSVGRATSTAELL 192
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 98/196 (50%), Gaps = 16/196 (8%)
Query: 348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQ---HDGNF 404
AP F + L + V G+ A I ++ W+R+ + + + + Q DG
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 405 YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGT- 463
+ + +V+ +SGR++ A N G++ + EL LV P F + L+++ QG+
Sbjct: 64 K-LTIPAVTKANSGRYSLKATNGSGQATSTAEL--LVKAETAPPNFVQRLQSMTVRQGSQ 120
Query: 464 VSLECKVMGIPTPQLIWYKDNKKIKA---------GDIFALTANPKDPSSLGTYTCEAVN 514
V L+ +V GIPTP + +Y+D +I++ GD+++L P GTY+ A N
Sbjct: 121 VRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATN 180
Query: 515 CMGAAFSTSRVIARGQ 530
+G A ST+ ++ +G+
Sbjct: 181 SVGRATSTAELLVQGE 196
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 81/136 (59%), Gaps = 3/136 (2%)
Query: 305 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVG 364
DGR +L I V + + GRYS+ A+N SG +T+ EL V+++ P F++RL + V+ G
Sbjct: 60 DGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAP-PNFVQRLQSMTVRQG 118
Query: 365 TRARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCL 423
++ RL V + PT + + +YR+ +++ + ++ +G+ Y + ++ DSG ++
Sbjct: 119 SQVRLQVRVTGIPTPV-VKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVN 177
Query: 424 AENAVGRSHCSCELSV 439
A N+VGR+ + EL V
Sbjct: 178 ATNSVGRATSTAELLV 193
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 23/154 (14%)
Query: 91 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVG 150
DGR +L I V + + GRYS+ A+N SG +T+ EL V+++ P F++RL + V+ G
Sbjct: 60 DGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAET-APPNFVQRLQSMTVRQG 118
Query: 151 TRARLLVEIRS-PTEIKCQF-----DLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELN 204
++ RL V + PT + +F ++ +++ F +GD L
Sbjct: 119 SQVRLQVRVTGIPTPV-VKFYRDGAEIQSSLDFQISQEGDL---------------YSLL 162
Query: 205 IRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 238
I +D G YSV A+N G +T+ EL V+ +
Sbjct: 163 IAEAYPEDSGTYSVNATNSVGRATSTAELLVQGE 196
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 23/154 (14%)
Query: 198 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVG 257
DGR +L I V + + GRYS+ A+N SG +T+ EL V+++ P F++RL + V+ G
Sbjct: 60 DGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAP-PNFVQRLQSMTVRQG 118
Query: 258 TRARLLVEIRS-PTEIKCQF-----DLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELN 311
++ RL V + PT + +F ++ +++ F +GD L
Sbjct: 119 SQVRLQVRVTGIPTPV-VKFYRDGAEIQSSLDFQISQEGDL---------------YSLL 162
Query: 312 IRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
I +D G YSV A+N G +T+ EL V+ +
Sbjct: 163 IAEAYPEDSGTYSVNATNSVGRATSTAELLVQGE 196
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 89/196 (45%), Gaps = 23/196 (11%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHI---MADGLG 606
AP F + +++V G++A E + P P + W+ V+ S + +DG
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPE-VSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 607 GYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG 666
+ I + + G + AT+ SG +A +L+ P FV+ L+++ G
Sbjct: 64 --KLTIPAVTKANSGRYSLKATNGSGQATSTA---ELLVKAETAPPNFVQRLQSMTVRQG 118
Query: 667 -LVSFECKVVGFPTPTLQWFKDNEELKP---------GDVYQLTGTSSL----GSYCCVA 712
V + +V G PTP +++++D E++ GD+Y L + G+Y A
Sbjct: 119 SQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNA 178
Query: 713 KNVMGKAESSTQLTIE 728
N +G+A S+ +L ++
Sbjct: 179 TNSVGRATSTAELLVQ 194
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 87/204 (42%), Gaps = 32/204 (15%)
Query: 650 RKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELK----PGDVYQLT-GTS 703
+ P F + L++V+ +G +FE + GFP P + WF+D + + PG + G +
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 704 SL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIE 753
L G Y A N G+A S+ +L L+ P F++
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAEL---------------LVKAETAPPNFVQ 108
Query: 754 GLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALE 813
L+S + + V+V+ P P V ++RD ++ S + +I +E + L I
Sbjct: 109 RLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEG-DLYSLLIAEAY 167
Query: 814 VADQAEWKCIATNDFGQSITSCFL 837
D + ATN G++ ++ L
Sbjct: 168 PEDSGTYSVNATNSVGRATSTAEL 191
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 9/68 (13%)
Query: 2 GIPTPQLIWYKDNKKIKA---------GDIFALTANPKDPSSLGTYTCEAVNCMGAAFST 52
GIPTP + +Y+D +I++ GD+++L P GTY+ A N +G A ST
Sbjct: 129 GIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATST 188
Query: 53 SRVIARGQ 60
+ ++ +G+
Sbjct: 189 AELLVQGE 196
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 64/167 (38%), Gaps = 38/167 (22%)
Query: 2 GIPTPQLIWYKDNKKIKAGDI------FA-----LTANPKDPSSLGTYTCEAVNCMGAAF 50
G P P++ W++D + I + F+ LT ++ G Y+ +A N G A
Sbjct: 31 GFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQAT 90
Query: 51 STSRVIARGQQS---FLDNDDVPFNRAQGDHPIFGNRFRAI-------NRDGRT------ 94
ST+ ++ + + + F+ R QG R I RDG
Sbjct: 91 STAELLVKAETAPPNFVQRLQSMTVR-QGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLD 149
Query: 95 ----------ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 131
L I +D G YSV A+N G +T+ EL V+ +
Sbjct: 150 FQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQGE 196
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/307 (26%), Positives = 130/307 (42%), Gaps = 45/307 (14%)
Query: 448 PFFTKEL-EAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK------------AGDIFA 494
P F KE + I G S C+ G P P++ W K KK+ AG +
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 495 LTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPF---NSLMPPGPAP 551
+ + P Y C A N +G + + + L D +P N M P
Sbjct: 67 IQPL-RTPRDENVYECVAQNSVG------EITVHAKLTVLREDQLPSGFPNIDMGPQ--- 116
Query: 552 IFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIE 611
+K VE + +A + C P P I W+ V+ S + G +++
Sbjct: 117 --LKVVERTR-----TATMLCAASGNPDPE-ITWFKDFLPVDPSASNGRIKQLRSG-ALQ 167
Query: 612 INYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRF-VESLKAVMTDDGLVSF 670
I E D G+++CVAT+S+GV+ S A ++V + PRF + + + G V+
Sbjct: 168 IESSEETDQGKYECVATNSAGVRYSSPANLYVRV--QNVAPRFSILPMSHEIMPGGNVNI 225
Query: 671 ECKVVGFPTPTLQWFKDNEELKPGD-------VYQLTGTSSLGSYCCVAKNVMGKAESST 723
C VG P P ++W + E+L P D V +LT +Y CVA + +G E+
Sbjct: 226 TCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVA 285
Query: 724 QLTIEDI 730
Q+T++ +
Sbjct: 286 QITVKSL 292
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 125/287 (43%), Gaps = 19/287 (6%)
Query: 652 PRFVESLK-AVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGSYCC 710
PRF++ K + G+ SF C+ G P P + W K +++ + S G+
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 711 VAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLK-SCQATVNEEFKFT 769
+ + E+ + ++ ++ KL +L ++ P + Q V E +
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTA 126
Query: 770 VQV---SISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
+ S +P+P+++WF+D V S + +K+ L L+I + E DQ +++C+ATN
Sbjct: 127 TMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ-LRSGALQIESSEETDQGKYECVATN 185
Query: 827 DFGQSITSCFLKLNVPKHYKKPKF-LEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGR 885
G +S L V P+F + + + GG VN+ C +G P P +KW +
Sbjct: 186 SAGVRYSSP-ANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAE 244
Query: 886 ELKAGD-------IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
+L D + ++ +D YTC A + +G + A +
Sbjct: 245 DLTPEDDMPVGRNVLELTDVKDSAN----YTCVAMSSLGVIEAVAQI 287
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 82/201 (40%), Gaps = 23/201 (11%)
Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETL 802
T + P+FI+ K F Q + P+P+V+W + ++V I E+
Sbjct: 2 TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
Query: 803 GVCHLKIHALEVA-DQAEWKCIATNDFGQSITSCFLKL----NVPKHYKKPKFLEELKAV 857
G L+I L D+ ++C+A N G+ L + +P + +LK V
Sbjct: 62 GAV-LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Query: 858 LSEGGAVNLECKVIGVPQPTLKWFKD----------GR--ELKAGDIHKIISGEDGTCCL 905
A L C G P P + WFKD GR +L++G + I S E+
Sbjct: 121 ERTRTATML-CAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQ-IESSEETD--Q 176
Query: 906 GIYTCEAHNCMGTTSSSAALL 926
G Y C A N G SS A L
Sbjct: 177 GKYECVATNSAGVRYSSPANL 197
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/318 (21%), Positives = 119/318 (37%), Gaps = 46/318 (14%)
Query: 348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHD---GNF 404
+ P FI+ D G A + + + ++ W + +K+ + + D G
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 405 YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL----VPKAYKAPFFTKELEAILTE 460
I D + C+A+N+VG +L+VL +P + +L+ ++
Sbjct: 65 LRIQPLRTPR-DENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLK-VVER 122
Query: 461 QGTVSLECKVMGIPTPQLIWYKD---------NKKIKAGDIFALTANPKDPSSLGTYTCE 511
T ++ C G P P++ W+KD N +IK AL + + G Y C
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECV 182
Query: 512 AVNCMGAAFST-SRVIARGQQSFLDNDDVPF-NSLMPPGPAPIFIKEVENVKAKIGTSAI 569
A N G +S+ + + R Q +P + +MP G NV
Sbjct: 183 ATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGG----------NVN-------- 224
Query: 570 LECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATS 629
+ C + P P + E + D +G +E+ ++ D + CVA S
Sbjct: 225 ITCVAVGSPMPYVKWMQGAEDLTPEDDM------PVGRNVLELTDVK--DSANYTCVAMS 276
Query: 630 SSGVKQFSAAYVHVLMPK 647
S GV + A +PK
Sbjct: 277 SLGVIEAVAQITVKSLPK 294
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 2 GIPTPQLIWYKD---------NKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFST 52
G P P++ W+KD N +IK AL + + G Y C A N G +S+
Sbjct: 134 GNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSS 193
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 80.9 bits (198), Expect = 4e-15, Method: Composition-based stats.
Identities = 55/191 (28%), Positives = 96/191 (50%), Gaps = 13/191 (6%)
Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETLGVC 805
+AP F + L+S F +S P P+VSWFRD Q + S + + + G
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 806 HLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAV 864
L I A+ A+ + ATN GQ+ ++ +L V P F++ L+++ + +G V
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTA--ELLVKAETAPPNFVQRLQSMTVRQGSQV 121
Query: 865 NLECKVIGVPQPTLKWFKDGRELKA---------GDIHKIISGEDGTCCLGIYTCEAHNC 915
L+ +V G+P P +K+++DG E+++ GD++ ++ E G Y+ A N
Sbjct: 122 RLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNS 181
Query: 916 MGTTSSSAALL 926
+G +S+A LL
Sbjct: 182 VGRATSTAELL 192
Score = 77.0 bits (188), Expect = 5e-14, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 81/136 (59%), Gaps = 3/136 (2%)
Query: 305 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVG 364
DGR +L I V + + GRYS+ A+N SG +T+ EL V+++ P F++RL + V+ G
Sbjct: 60 DGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA-PPNFVQRLQSMTVRQG 118
Query: 365 TRARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCL 423
++ RL V + PT + + +YR+ +++ + ++ +G+ Y + ++ DSG ++
Sbjct: 119 SQVRLQVRVTGIPTPV-VKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVN 177
Query: 424 AENAVGRSHCSCELSV 439
A N+VGR+ + EL V
Sbjct: 178 ATNSVGRATSTAELLV 193
Score = 75.5 bits (184), Expect = 2e-13, Method: Composition-based stats.
Identities = 53/193 (27%), Positives = 96/193 (49%), Gaps = 16/193 (8%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQ---HDGNFY 405
AP F + L + V G+ A I ++ W+R+ + + + + Q DG
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 406 FIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGT-V 464
+ + +V+ +SGR++ A N G++ + EL LV P F + L+++ QG+ V
Sbjct: 65 -LTIPAVTKANSGRYSLKATNGSGQATSTAEL--LVKAETAPPNFVQRLQSMTVRQGSQV 121
Query: 465 SLECKVMGIPTPQLIWYKDNKKIKA---------GDIFALTANPKDPSSLGTYTCEAVNC 515
L+ +V GIPTP + +Y+D +I++ GD+++L P GTY+ A N
Sbjct: 122 RLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNS 181
Query: 516 MGAAFSTSRVIAR 528
+G A ST+ ++ +
Sbjct: 182 VGRATSTAELLVQ 194
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 21/151 (13%)
Query: 91 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVG 150
DGR +L I V + + GRYS+ A+N SG +T+ EL V+++ P F++RL + V+ G
Sbjct: 60 DGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA-PPNFVQRLQSMTVRQG 118
Query: 151 TRARLLVEIRS-PTEI----KCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNI 205
++ RL V + PT + + ++ +++ F +GD L I
Sbjct: 119 SQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGD---------------LYSLLI 163
Query: 206 RRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
+D G YSV A+N G +T+ EL V+
Sbjct: 164 AEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 21/151 (13%)
Query: 198 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVG 257
DGR +L I V + + GRYS+ A+N SG +T+ EL V+++ P F++RL + V+ G
Sbjct: 60 DGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA-PPNFVQRLQSMTVRQG 118
Query: 258 TRARLLVEIRS-PTEI----KCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNI 312
++ RL V + PT + + ++ +++ F +GD L I
Sbjct: 119 SQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGD---------------LYSLLI 163
Query: 313 RRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
+D G YSV A+N G +T+ EL V+
Sbjct: 164 AEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
Score = 57.0 bits (136), Expect = 6e-08, Method: Composition-based stats.
Identities = 42/189 (22%), Positives = 81/189 (42%), Gaps = 2/189 (1%)
Query: 650 RKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGSY 708
+ P F + L++V+ +G +FE + GFP P + WF+D + + + + + S G
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 709 CCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKF 768
V L + + +LL+ P F++ L+S + +
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
Query: 769 TVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDF 828
V+V+ P P V ++RD ++ S + +I +E + L I D + ATN
Sbjct: 124 QVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEG-DLYSLLIAEAYPEDSGTYSVNATNSV 182
Query: 829 GQSITSCFL 837
G++ ++ L
Sbjct: 183 GRATSTAEL 191
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 19/194 (9%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
AP F + +++V G++A E + P P + W+ V+ S + G +
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPE-VSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 610 -IEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-L 667
+ I + + G + AT+ SG +A +L+ P FV+ L+++ G
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTA---ELLVKAETAPPNFVQRLQSMTVRQGSQ 120
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKP---------GDVYQLTGTSSL----GSYCCVAKN 714
V + +V G PTP +++++D E++ GD+Y L + G+Y A N
Sbjct: 121 VRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATN 180
Query: 715 VMGKAESSTQLTIE 728
+G+A S+ +L ++
Sbjct: 181 SVGRATSTAELLVQ 194
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 9/66 (13%)
Query: 2 GIPTPQLIWYKDNKKIKA---------GDIFALTANPKDPSSLGTYTCEAVNCMGAAFST 52
GIPTP + +Y+D +I++ GD+++L P GTY+ A N +G A ST
Sbjct: 129 GIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATST 188
Query: 53 SRVIAR 58
+ ++ +
Sbjct: 189 AELLVQ 194
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 61/165 (36%), Gaps = 38/165 (23%)
Query: 2 GIPTPQLIWYKDNKKIKAGDI-----------FALTANPKDPSSLGTYTCEAVNCMGAAF 50
G P P++ W++D + I + LT ++ G Y+ +A N G A
Sbjct: 31 GFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQAT 90
Query: 51 STSRVIARGQQS---FLDNDDVPFNRAQGDHPIFGNRFRAIN-------RDGRT------ 94
ST+ ++ + + + F+ R QG R I RDG
Sbjct: 91 STAELLVKAETAPPNFVQRLQSMTVR-QGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLD 149
Query: 95 ----------ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
L I +D G YSV A+N G +T+ EL V+
Sbjct: 150 FQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 92/430 (21%), Positives = 160/430 (37%), Gaps = 90/430 (20%)
Query: 447 APFFTKELEAIL----TEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIF--------A 494
P F +E ++ +E+ V L C+V G P P + W + + G F
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 64
Query: 495 LTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFI 554
L NP GTY C A N G S A+ Q ++L+N F +
Sbjct: 65 LINNPNKTQDAGTYQCIATNSFGTIVSRE---AKLQFAYLEN----FKT----------- 106
Query: 555 KEVENVKAKIGTSAILECQVLVPPWPRS-----IYWYNKEGVVEASDKYHIMADGLGGYS 609
+ V + G +L C PP P S + +N+ + + ++ G +
Sbjct: 107 RTRSTVSVRRGQGMVLLCG---PP-PHSGELSYAWIFNEYPSYQDNRRFVSQETG----N 158
Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKN-----YRKPRFVESLKAVMTD 664
+ I +E D G + CV T++ + +++ + Y V+ + V +
Sbjct: 159 LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAE 218
Query: 665 DG-LVSFECKVVGFPTPTLQW--------------FKDNEELKPGDVYQLTGTSSLGSYC 709
G V EC +G P PT+ W K N L+ + Q GSY
Sbjct: 219 KGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQ----EDAGSYE 274
Query: 710 CVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFT 769
CVA+N GK + QLT P +++ + + E +
Sbjct: 275 CVAENSRGKNVAKGQLTFY------------------AQPNWVQIINDIHVAMEESVFWE 316
Query: 770 VQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFG 829
+ + P+P W ++ ++ D ++I + T L I + ++D ++C+A N G
Sbjct: 317 CKANGRPKPTYRWLKNGDPLLTRDRIQIEQGT-----LNITIVNLSDAGMYQCVAENKHG 371
Query: 830 QSITSCFLKL 839
+S L +
Sbjct: 372 VIFSSAELSV 381
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 171/412 (41%), Gaps = 67/412 (16%)
Query: 547 PGPAPIFIKEVENVKAKIGT---SAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMAD 603
PG P+F++E +V + + L C+V P P + N V D + + D
Sbjct: 2 PGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD 61
Query: 604 GLGGYSIEINYLEAVDD-GEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVM 662
G S+ IN D G ++C+AT+S G A + +N++ S +V
Sbjct: 62 G----SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKT--RTRSTVSVR 115
Query: 663 TDDGLVSFECKVVGFPTP-----TLQW-------FKDNEEL---KPGDVY-QLTGTSSLG 706
G+V ++ P P + W ++DN + G++Y S +G
Sbjct: 116 RGQGMV-----LLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVG 170
Query: 707 SYCCVAKNVMGKAESSTQLTIEDIRNH--LSEEDKLLLLTNNKAPKFIEGLKSCQATVNE 764
+Y CV N + + T +RN + E + + + +F E + + + T +
Sbjct: 171 NYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEV------QFPETVPAEKGTTVK 224
Query: 765 EFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIA 824
F + +P P + W R D + + + ++ G+ L+I + D ++C+A
Sbjct: 225 LECFALG---NPVPTILWRRADGKPIARKARR--HKSNGI--LEIPNFQQEDAGSYECVA 277
Query: 825 TNDFGQSITSCFLKLNVPKHYKKPKFLE---ELKAVLSEGGAVNLECKVIGVPQPTLKWF 881
N G+++ L Y +P +++ ++ + E +V ECK G P+PT +W
Sbjct: 278 ENSRGKNVAKGQLTF-----YAQPNWVQIINDIHVAMEE--SVFWECKANGRPKPTYRWL 330
Query: 882 KDGRELKAGDIHKIISGEDGTCCL--------GIYTCEAHNCMGTTSSSAAL 925
K+G L D +I E GT + G+Y C A N G SSA L
Sbjct: 331 KNGDPLLTRDRIQI---EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAEL 379
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 87/392 (22%), Positives = 154/392 (39%), Gaps = 54/392 (13%)
Query: 271 EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNE 330
++ C+ N ++ G G FR DG +N + D G Y A+N
Sbjct: 27 KLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLIN-NPNKTQDAGTYQCIATNS 85
Query: 331 SGYSTAKFELSVESQVPDAPAFIRRLHD-IAVKVGTRARLLVEIRSPT-EIKIHWYRNDR 388
G ++ + Q F R ++V+ G LL + E+ W N+
Sbjct: 86 FGTIVSR---EAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEY 142
Query: 389 -KLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPK---- 443
++N+ + +Q GN Y ++ V D G +TC+ N V + L+ +
Sbjct: 143 PSYQDNRRFVSQETGNLY---IAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGV 199
Query: 444 --AYKAPFFTKELEAILTEQGT-VSLECKVMGIPTPQLIWYK-DNKKI-------KAGDI 492
Y+ + E + E+GT V LEC +G P P ++W + D K I K+ I
Sbjct: 200 MGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI 259
Query: 493 FALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPI 552
+ ++ + G+Y C A N G + +A+GQ +F P
Sbjct: 260 LEIPNFQQEDA--GSYECVAENSRG------KNVAKGQLTFYAQ--------------PN 297
Query: 553 FIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEI 612
+++ + ++ + S EC+ P P + W + D+ I ++ I
Sbjct: 298 WVQIINDIHVAMEESVFWECKANGRPKP-TYRWLKNGDPLLTRDRIQIEQG-----TLNI 351
Query: 613 NYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL 644
+ D G ++CVA + GV FS+A + V+
Sbjct: 352 TIVNLSDAGMYQCVAENKHGVI-FSSAELSVI 382
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 84/380 (22%), Positives = 138/380 (36%), Gaps = 71/380 (18%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIF--------ALTANPKDPSSLGTYTCEAVNCMGAAFSTS 53
G P P + W + + G F L NP GTY C A N G S
Sbjct: 34 GNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSRE 93
Query: 54 RVIARGQQSFLDN------DDVPFNRAQG---------------------DHPIFGNRFR 86
A+ Q ++L+N V R QG ++P + + R
Sbjct: 94 ---AKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRR 150
Query: 87 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR---LH 143
++++ L I +V + D G Y+ +N T L P P +R +
Sbjct: 151 FVSQE-TGNLYIAKVEKSDVGNYTCVVTNT---VTNHKVLG-----PPTPLILRNDGVMG 201
Query: 144 DIAVKVGTRARLLVEIRSPTEIKCQ-FDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE 202
+ K+ + V T +K + F L N +P + D + R +G
Sbjct: 202 EYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI-- 259
Query: 203 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 262
L I +++D G Y A N G + AK +L+ +Q P +++ ++DI V
Sbjct: 260 LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQ----PNWVQIINDIHVA------- 308
Query: 263 LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGR 322
+ +C+ + + + GD + +R + + LNI V D G
Sbjct: 309 ---MEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI----EQGTLNITIVNLSDAGM 361
Query: 323 YSVTASNESGYSTAKFELSV 342
Y A N+ G + ELSV
Sbjct: 362 YQCVAENKHGVIFSSAELSV 381
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 109/262 (41%), Gaps = 25/262 (9%)
Query: 184 DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 243
++P + + R ++++ L I +V + D G Y+ +N T L P P
Sbjct: 141 EYPSYQDNRRFVSQE-TGNLYIAKVEKSDVGNYTCVVTNTV---TNHKVLG-----PPTP 191
Query: 244 AFIRR---LHDIAVKVGTRARLLVEIRSPTEIKCQ-FDLNNTIPFSFRAQGDHPIFGNRF 299
+R + + K+ + V T +K + F L N +P + D +
Sbjct: 192 LILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKA 251
Query: 300 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDI 359
R +G L I +++D G Y A N G + AK +L+ +Q P +++ ++DI
Sbjct: 252 RRHKSNGI--LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQ----PNWVQIINDI 305
Query: 360 AVKVGTRARLLVEIRSPTEIKIHWYRN-DRKLEENKIYRTQHDGNFYFIDLSSVSLFDSG 418
V + + + W +N D L ++I Q N ++LS D+G
Sbjct: 306 HVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLS-----DAG 360
Query: 419 RWTCLAENAVGRSHCSCELSVL 440
+ C+AEN G S ELSV+
Sbjct: 361 MYQCVAENKHGVIFSSAELSVI 382
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 848 PKFLEELKAVL----SEGGAVNLECKVIGVPQPTLKWFKDGRELKAG--------DIHKI 895
P F++E V+ SE V L C+V G P+P ++W +G ++ G D +
Sbjct: 6 PVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLL 65
Query: 896 ISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGF 928
I+ + T G Y C A N GT S A L F
Sbjct: 66 INNPNKTQDAGTYQCIATNSFGTIVSREAKLQF 98
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 92/430 (21%), Positives = 160/430 (37%), Gaps = 90/430 (20%)
Query: 447 APFFTKELEAIL----TEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIF--------A 494
P F +E ++ +E+ V L C+V G P P + W + + G F
Sbjct: 4 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 63
Query: 495 LTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFI 554
L NP GTY C A N G S A+ Q ++L+N F +
Sbjct: 64 LINNPNKTQDAGTYQCIATNSFGTIVSRE---AKLQFAYLEN----FKT----------- 105
Query: 555 KEVENVKAKIGTSAILECQVLVPPWPRS-----IYWYNKEGVVEASDKYHIMADGLGGYS 609
+ V + G +L C PP P S + +N+ + + ++ G +
Sbjct: 106 RTRSTVSVRRGQGMVLLCG---PP-PHSGELSYAWIFNEYPSYQDNRRFVSQETG----N 157
Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKN-----YRKPRFVESLKAVMTD 664
+ I +E D G + CV T++ + +++ + Y V+ + V +
Sbjct: 158 LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAE 217
Query: 665 DG-LVSFECKVVGFPTPTLQW--------------FKDNEELKPGDVYQLTGTSSLGSYC 709
G V EC +G P PT+ W K N L+ + Q GSY
Sbjct: 218 KGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQ----EDAGSYE 273
Query: 710 CVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFT 769
CVA+N GK + QLT P +++ + + E +
Sbjct: 274 CVAENSRGKNVAKGQLTFY------------------AQPNWVQIINDIHVAMEESVFWE 315
Query: 770 VQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFG 829
+ + P+P W ++ ++ D ++I + T L I + ++D ++C+A N G
Sbjct: 316 CKANGRPKPTYRWLKNGDPLLTRDRIQIEQGT-----LNITIVNLSDAGMYQCVAENKHG 370
Query: 830 QSITSCFLKL 839
+S L +
Sbjct: 371 VIFSSAELSV 380
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 171/412 (41%), Gaps = 67/412 (16%)
Query: 547 PGPAPIFIKEVENVKAKIGT---SAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMAD 603
PG P+F++E +V + + L C+V P P + N V D + + D
Sbjct: 1 PGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD 60
Query: 604 GLGGYSIEINYLEAVDD-GEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVM 662
G S+ IN D G ++C+AT+S G A + +N++ S +V
Sbjct: 61 G----SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKT--RTRSTVSVR 114
Query: 663 TDDGLVSFECKVVGFPTP-----TLQW-------FKDNEEL---KPGDVY-QLTGTSSLG 706
G+V ++ P P + W ++DN + G++Y S +G
Sbjct: 115 RGQGMV-----LLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVG 169
Query: 707 SYCCVAKNVMGKAESSTQLTIEDIRNH--LSEEDKLLLLTNNKAPKFIEGLKSCQATVNE 764
+Y CV N + + T +RN + E + + + +F E + + + T +
Sbjct: 170 NYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEV------QFPETVPAEKGTTVK 223
Query: 765 EFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIA 824
F + +P P + W R D + + + ++ G+ L+I + D ++C+A
Sbjct: 224 LECFALG---NPVPTILWRRADGKPIARKARR--HKSNGI--LEIPNFQQEDAGSYECVA 276
Query: 825 TNDFGQSITSCFLKLNVPKHYKKPKFLE---ELKAVLSEGGAVNLECKVIGVPQPTLKWF 881
N G+++ L Y +P +++ ++ + E +V ECK G P+PT +W
Sbjct: 277 ENSRGKNVAKGQLTF-----YAQPNWVQIINDIHVAMEE--SVFWECKANGRPKPTYRWL 329
Query: 882 KDGRELKAGDIHKIISGEDGTCCL--------GIYTCEAHNCMGTTSSSAAL 925
K+G L D +I E GT + G+Y C A N G SSA L
Sbjct: 330 KNGDPLLTRDRIQI---EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAEL 378
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 87/392 (22%), Positives = 154/392 (39%), Gaps = 54/392 (13%)
Query: 271 EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNE 330
++ C+ N ++ G G FR DG +N + D G Y A+N
Sbjct: 26 KLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLIN-NPNKTQDAGTYQCIATNS 84
Query: 331 SGYSTAKFELSVESQVPDAPAFIRRLHD-IAVKVGTRARLLVEIRSPT-EIKIHWYRNDR 388
G ++ + Q F R ++V+ G LL + E+ W N+
Sbjct: 85 FGTIVSR---EAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEY 141
Query: 389 -KLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPK---- 443
++N+ + +Q GN Y ++ V D G +TC+ N V + L+ +
Sbjct: 142 PSYQDNRRFVSQETGNLY---IAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGV 198
Query: 444 --AYKAPFFTKELEAILTEQGT-VSLECKVMGIPTPQLIWYK-DNKKI-------KAGDI 492
Y+ + E + E+GT V LEC +G P P ++W + D K I K+ I
Sbjct: 199 MGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI 258
Query: 493 FALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPI 552
+ ++ + G+Y C A N G + +A+GQ +F P
Sbjct: 259 LEIPNFQQEDA--GSYECVAENSRG------KNVAKGQLTFYAQ--------------PN 296
Query: 553 FIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEI 612
+++ + ++ + S EC+ P P + W + D+ I ++ I
Sbjct: 297 WVQIINDIHVAMEESVFWECKANGRPKP-TYRWLKNGDPLLTRDRIQIEQG-----TLNI 350
Query: 613 NYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL 644
+ D G ++CVA + GV FS+A + V+
Sbjct: 351 TIVNLSDAGMYQCVAENKHGVI-FSSAELSVI 381
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 84/380 (22%), Positives = 138/380 (36%), Gaps = 71/380 (18%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIF--------ALTANPKDPSSLGTYTCEAVNCMGAAFSTS 53
G P P + W + + G F L NP GTY C A N G S
Sbjct: 33 GNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSRE 92
Query: 54 RVIARGQQSFLDN------DDVPFNRAQG---------------------DHPIFGNRFR 86
A+ Q ++L+N V R QG ++P + + R
Sbjct: 93 ---AKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRR 149
Query: 87 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR---LH 143
++++ L I +V + D G Y+ +N T L P P +R +
Sbjct: 150 FVSQE-TGNLYIAKVEKSDVGNYTCVVTNT---VTNHKVLG-----PPTPLILRNDGVMG 200
Query: 144 DIAVKVGTRARLLVEIRSPTEIKCQ-FDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE 202
+ K+ + V T +K + F L N +P + D + R +G
Sbjct: 201 EYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI-- 258
Query: 203 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 262
L I +++D G Y A N G + AK +L+ +Q P +++ ++DI V
Sbjct: 259 LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQ----PNWVQIINDIHVA------- 307
Query: 263 LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGR 322
+ +C+ + + + GD + +R + + LNI V D G
Sbjct: 308 ---MEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI----EQGTLNITIVNLSDAGM 360
Query: 323 YSVTASNESGYSTAKFELSV 342
Y A N+ G + ELSV
Sbjct: 361 YQCVAENKHGVIFSSAELSV 380
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 109/262 (41%), Gaps = 25/262 (9%)
Query: 184 DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 243
++P + + R ++++ L I +V + D G Y+ +N T L P P
Sbjct: 140 EYPSYQDNRRFVSQE-TGNLYIAKVEKSDVGNYTCVVTNTV---TNHKVLG-----PPTP 190
Query: 244 AFIRR---LHDIAVKVGTRARLLVEIRSPTEIKCQ-FDLNNTIPFSFRAQGDHPIFGNRF 299
+R + + K+ + V T +K + F L N +P + D +
Sbjct: 191 LILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKA 250
Query: 300 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDI 359
R +G L I +++D G Y A N G + AK +L+ +Q P +++ ++DI
Sbjct: 251 RRHKSNGI--LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQ----PNWVQIINDI 304
Query: 360 AVKVGTRARLLVEIRSPTEIKIHWYRN-DRKLEENKIYRTQHDGNFYFIDLSSVSLFDSG 418
V + + + W +N D L ++I Q N ++LS D+G
Sbjct: 305 HVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLS-----DAG 359
Query: 419 RWTCLAENAVGRSHCSCELSVL 440
+ C+AEN G S ELSV+
Sbjct: 360 MYQCVAENKHGVIFSSAELSVI 381
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 848 PKFLEELKAVL----SEGGAVNLECKVIGVPQPTLKWFKDGRELKAG--------DIHKI 895
P F++E V+ SE V L C+V G P+P ++W +G ++ G D +
Sbjct: 5 PVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLL 64
Query: 896 ISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGF 928
I+ + T G Y C A N GT S A L F
Sbjct: 65 INNPNKTQDAGTYQCIATNSFGTIVSREAKLQF 97
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 119/297 (40%), Gaps = 41/297 (13%)
Query: 560 VKAKIGTSAILECQVLVPPWPRSIYWYNKEG-VVEASDKYHIMADGLGGYSIEINYLEAV 618
V+ +G S C + P SI WYN +G + ++ + + +G+ + I
Sbjct: 14 VELSVGESKFFTCTAIGEP--ESIDWYNPQGEKIISTQRVVVQKEGVRS-RLTIYNANIE 70
Query: 619 DDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFP 678
D G ++C AT + G Q + + + +R+ + K +D V C+V P
Sbjct: 71 DAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFK--QGEDAEVV--CRVSSSP 126
Query: 679 TPTLQWFKDNEELKP------------GDVYQLTGTSSLGSYCCVAKNVMGKAESSTQLT 726
P + W NEE+ S G Y C G+ E+ ++
Sbjct: 127 APAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC-----EGRVEARGEID 181
Query: 727 IEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATV--NEEFKFTVQVSISPEPKVSWFR 784
DI ++ N P KS AT EE F+ + S SPEP +SWFR
Sbjct: 182 FRDI-----------IVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR 230
Query: 785 DDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
+ +++E + ILK + L + + +D + C ATN G+ FL++ V
Sbjct: 231 NG-KLIEENEKYILKGSN--TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 284
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 91/234 (38%), Gaps = 36/234 (15%)
Query: 506 GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIG 565
G Y C+A + G + V+ Q+ + F ++ P + K G
Sbjct: 73 GIYRCQATDAKGQTQEATVVLEIYQK-------LTFREVVSPQ------------EFKQG 113
Query: 566 TSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKC 625
A + C+V P P + Y+ E V SD M L +++I + D+G ++C
Sbjct: 114 EDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM---LANNNLQILNINKSDEGIYRC 170
Query: 626 VA-TSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQW 684
+ G F V V +P P+ +S A ++F C+ G P P + W
Sbjct: 171 EGRVEARGEIDFRDIIVIVNVPPAISMPQ--KSFNATAERGEEMTFSCRASGSPEPAISW 228
Query: 685 FKDNEELKPGDVYQLTGT-----------SSLGSYCCVAKNVMGKAESSTQLTI 727
F++ + ++ + Y L G+ S G Y C A N G+ E L +
Sbjct: 229 FRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 110/284 (38%), Gaps = 49/284 (17%)
Query: 670 FECKVVGFPTPTLQWFKDNEE----------LKPGDVYQLT----GTSSLGSYCCVAKNV 715
F C +G P ++ W+ E K G +LT G Y C A +
Sbjct: 24 FTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA 82
Query: 716 MGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSIS 775
G+ + +T + +I L+ F E + + E+ + +VS S
Sbjct: 83 KGQTQEAT--VVLEIYQKLT---------------FREVVSPQEFKQGEDAEVVCRVSSS 125
Query: 776 PEPKVSWFRDDQQVVE-SDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSI-- 832
P P VSW +++V SDN + L +L+I + +D+ ++C + I
Sbjct: 126 PAPAVSWLYHNEEVTTISDNRFAM---LANNNLQILNINKSDEGIYRCEGRVEARGEIDF 182
Query: 833 TSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDI 892
+ +NVP P+ + A G + C+ G P+P + WF++G+ ++ +
Sbjct: 183 RDIIVIVNVPPAISMPQ--KSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEK 240
Query: 893 HKIISGEDGTCCL--------GIYTCEAHNCMGTTSSSAALLGF 928
+ I+ G + + G Y C A N G A L F
Sbjct: 241 Y-ILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 283
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 88/251 (35%), Gaps = 35/251 (13%)
Query: 286 FRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
+ QG+ I R R+ L I +D G Y A++ G + E +V +
Sbjct: 38 YNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQ---EATVVLE 94
Query: 346 VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFY 405
+ F + K G A ++ + S + W L N+ T D F
Sbjct: 95 IYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSW------LYHNEEVTTISDNRFA 148
Query: 406 FIDLSSVSLF-----DSGRWTCLAENAVGRSHCSCELS-------VLVPKAYKAPFFTKE 453
+ +++ + D G + C GR E+ V VP A P K
Sbjct: 149 MLANNNLQILNINKSDEGIYRCE-----GRVEARGEIDFRDIIVIVNVPPAISMP--QKS 201
Query: 454 LEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD-------PSSLG 506
A ++ C+ G P P + W+++ K I+ + + L + + S G
Sbjct: 202 FNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGG 261
Query: 507 TYTCEAVNCMG 517
Y C A N G
Sbjct: 262 PYVCRATNKAG 272
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 53/263 (20%), Positives = 93/263 (35%), Gaps = 16/263 (6%)
Query: 179 FRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 238
+ QG+ I R R+ L I +D G Y A++ G + E +V +
Sbjct: 38 YNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQ---EATVVLE 94
Query: 239 VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNR 298
+ F + K G A ++ + S + + + + I NR
Sbjct: 95 IYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPA--------PAVSWLYHNEEVTTISDNR 146
Query: 299 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 358
F + L I + + D G Y E+ ++ V VP A + ++ +
Sbjct: 147 FAML---ANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFN 203
Query: 359 IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSG 418
+ G E I W+RN + +EEN+ Y + G+ + + ++ D G
Sbjct: 204 ATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK--GSNTELTVRNIINSDGG 261
Query: 419 RWTCLAENAVGRSHCSCELSVLV 441
+ C A N G L V V
Sbjct: 262 PYVCRATNKAGEDEKQAFLQVFV 284
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 122/547 (22%), Positives = 211/547 (38%), Gaps = 92/547 (16%)
Query: 357 HDIAVKVGTRARLLVEIRSPTEIKI--HWYRNDRKLEENKI----YRTQHDGN----FYF 406
H I + VG + L R+ + I +W K + K+ +TQ
Sbjct: 232 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 291
Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPF--FTKELEAIL--TEQG 462
+ + V+ D G +TC A + + S + V ++ PF F +E+++ T
Sbjct: 292 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV-----HEKPFVAFGSGMESLVEATVGE 346
Query: 463 TVSLECKVMGIPTPQLIWYKD------NKKIKAGDIFALTANPKDPSSLGTYTCEAVNCM 516
V + K +G P P++ WYK+ N IKAG + LT G YT N
Sbjct: 347 RVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHV--LTIMEVSERDTGNYTVILTN-- 402
Query: 517 GAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPA-PIFIKEVENVKAKIGTSAILECQVL 575
I++ +QS + V +PP I V++ + GT+ L C V
Sbjct: 403 --------PISKEKQSHV----VSLVVYVPPQIGEKSLISPVDSYQ--YGTTQTLTCTVY 448
Query: 576 VPPWPRSIYWY---NKEGVVEAS-----------DKYHIMADGLGGYSIEINYLE-AVDD 620
P P I+WY +E E S +++ + D GG IE+N + A+ +
Sbjct: 449 AIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIE 508
Query: 621 GEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVE---------SLKAVM--TDDGLVS 669
G+ K V+T SA Y + K R R + +L+ M T+ VS
Sbjct: 509 GKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVS 568
Query: 670 FECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGSYCCVAKNVMGKAESSTQLTIED 729
C L W+K + P V +L N + S+ + I +
Sbjct: 569 LWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIME 628
Query: 730 IRN-HLSEEDKLLLLTNNK------------------APKFIEGLKSCQATVNEEFKFTV 770
++N L ++ + L ++ AP L++ ++ E + +
Sbjct: 629 LKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSC 688
Query: 771 QVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQ 830
S +P P++ WF+D++ +VE + +LK+ G +L I + D+ + C A + G
Sbjct: 689 TASGNPPPQIMWFKDNETLVEDSGI-VLKD--GNRNLTIRRVRKEDEGLYTCQACSVLGC 745
Query: 831 SITSCFL 837
+ F
Sbjct: 746 AKVEAFF 752
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 13/139 (9%)
Query: 403 NFYFIDLSSVSLFDSGRWTCLAEN-AVGRSHCSC-ELSVLVPKAYKAPFFTKELEAILTE 460
+ ++L + SL D G + CLA++ + HC +L+VL AP T LE T
Sbjct: 623 DILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVL---ERVAPTITGNLENQTTS 679
Query: 461 QG-TVSLECKVMGIPTPQLIWYKDNKKI--KAGDIFA-----LTANPKDPSSLGTYTCEA 512
G ++ + C G P PQ++W+KDN+ + +G + LT G YTC+A
Sbjct: 680 IGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQA 739
Query: 513 VNCMGAAFSTSRVIARGQQ 531
+ +G A + I G Q
Sbjct: 740 CSVLGCAKVEAFFIIEGAQ 758
Score = 37.0 bits (84), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 19/145 (13%)
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK-AVLSEGGAVN 865
+++ + DQ ++ C+A D C ++ P L+ S G ++
Sbjct: 627 MELKNASLQDQGDYVCLA-QDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIE 685
Query: 866 LECKVIGVPQPTLKWFKD--------GRELKAGDIHKII---SGEDGTCCLGIYTCEAHN 914
+ C G P P + WFKD G LK G+ + I ED G+YTC+A +
Sbjct: 686 VSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDE----GLYTCQACS 741
Query: 915 CMGTTSSSAALL--GFEDKSQIEKA 937
+G A + G ++K+ +E+
Sbjct: 742 VLGCAKVEAFFIIEGAQEKTNLERT 766
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNL 866
L I + +DQ + C A++ S F++++ +E L + G V +
Sbjct: 292 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEA-TVGERVRI 350
Query: 867 ECKVIGVPQPTLKWFKDGRELKAGDIHKIISG 898
K +G P P +KW+K+G L++ H I +G
Sbjct: 351 PAKYLGYPPPEIKWYKNGIPLESN--HTIKAG 380
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 2 GIPTPQLIWYKDNKKI--KAGDIFA-----LTANPKDPSSLGTYTCEAVNCMGAAFSTSR 54
G P PQ++W+KDN+ + +G + LT G YTC+A + +G A +
Sbjct: 692 GNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAF 751
Query: 55 VIARGQQ 61
I G Q
Sbjct: 752 FIIEGAQ 758
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 92/427 (21%), Positives = 154/427 (36%), Gaps = 85/427 (19%)
Query: 449 FFTKELEAILTEQGT---VSLECKVMGIPTPQLIWYKDNKKIK----------AGDIFAL 495
F + L + E+ T V L C+ P W + ++K G++ +
Sbjct: 6 FEDQPLSVLFPEESTEEQVLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVIM 65
Query: 496 TANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIK 555
NP G Y C A N +G S ++ G FL F K
Sbjct: 66 --NPTKAQDAGVYQCLASNPVGTVVSREAILRFG---FLQE----------------FSK 104
Query: 556 EVEN-VKAKIGTSAILECQVLVPP--WPRSIY-W-YNKEGVVEASDKYHIMADGLGGYSI 610
E + VKA G +L C PP +P Y W N+ +D H ++ G ++
Sbjct: 105 EERDPVKAHEGWGVMLPCN---PPAHYPGLSYRWLLNEFPNFIPTDGRHFVSQTTG--NL 159
Query: 611 EINYLEAVDDGEWKCVATSS---------SGVKQFSAAYVHVLMPKNYRKPRFVESLKAV 661
I A D G + C+ATS S Q + A + K RF A+
Sbjct: 160 YIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDTRLFAPSIKARFPAETYAL 219
Query: 662 MTDDGLVSFECKVVGFPTPTLQWFKDNEELKPG-----DVYQLTGTS--SLGSYCCVAKN 714
+ V+ EC G P P ++W K + L P Q+ S G+Y C A+N
Sbjct: 220 VGQQ--VTLECFAFGNPVPRIKWRKVDGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAEN 277
Query: 715 VMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSI 774
G+ ++ ++ P++++ + +A + ++ +
Sbjct: 278 SKGRDTVQGRIIVQ------------------AQPEWLKVISDTEADIGSNLRWGCAAAG 319
Query: 775 SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITS 834
P P V W R+ + + + V++L L+ L + D ++C+A N G S
Sbjct: 320 KPRPTVRWLRNGEPLASQNRVEVL-----AGDLRFSKLSLEDSGMYQCVAENKHGTIYAS 374
Query: 835 CFLKLNV 841
L +
Sbjct: 375 AELAVQA 381
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 87/382 (22%), Positives = 157/382 (41%), Gaps = 54/382 (14%)
Query: 569 ILECQVLVPPWPRSIYWY--NKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCV 626
+L C+ P P + W E +E ++ + +GG + +N +A D G ++C+
Sbjct: 25 LLACRARASP-PATYRWKMNGTEMKLEPGSRHQL----VGGNLVIMNPTKAQDAGVYQCL 79
Query: 627 ATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGL-VSFECKVVG-FPTPTLQW 684
A++ G A + + + K E V +G V C +P + +W
Sbjct: 80 ASNPVGTVVSREAILRFGFLQEFSK----EERDPVKAHEGWGVMLPCNPPAHYPGLSYRW 135
Query: 685 FKDN-EELKPGD----VYQLTG--------TSSLGSYCCVAKNVMGKAESSTQLTIEDIR 731
+ P D V Q TG S LG+Y C+A + M + S +
Sbjct: 136 LLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQL- 194
Query: 732 NHLSEEDKLLLLTNNKA--PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQV 789
+L+ ED L + KA P L Q T+ E F F +P P++ W + D +
Sbjct: 195 -NLAAEDTRLFAPSIKARFPAETYALVGQQVTL-ECFAFG-----NPVPRIKWRKVDGSL 247
Query: 790 VESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPK 849
+ T L+I ++ D+ ++C A N G+ + + +P+
Sbjct: 248 SP-------QWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQA-----QPE 295
Query: 850 FLEELKAVLSE-GGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL--- 905
+L+ + ++ G + C G P+PT++W ++G L + + ++++G+ L
Sbjct: 296 WLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLAGDLRFSKLSLE 355
Query: 906 --GIYTCEAHNCMGTTSSSAAL 925
G+Y C A N GT +SA L
Sbjct: 356 DSGMYQCVAENKHGTIYASAEL 377
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 94/245 (38%), Gaps = 32/245 (13%)
Query: 203 LNIRRVRRDDGGRYSVTASNESGYST-------AKFELSVESQVPDAPAFIRRLHDIAVK 255
L I R D G YS A++ +ST A+ L+ E RL ++K
Sbjct: 159 LYIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDT---------RLFAPSIK 209
Query: 256 VGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRV 315
A + ++C F N +P + D + A L I V
Sbjct: 210 ARFPAETYALVGQQVTLEC-FAFGNPVPRIKWRKVDGSLSPQWTTA-----EPTLQIPSV 263
Query: 316 RRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS 375
+D G Y A N G T + + V++Q P +++ + D +G+ R
Sbjct: 264 SFEDEGTYECEAENSKGRDTVQGRIIVQAQ----PEWLKVISDTEADIGSNLRWGCAAAG 319
Query: 376 PTEIKIHWYRNDRKL-EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCS 434
+ W RN L +N++ D F S +SL DSG + C+AEN G + S
Sbjct: 320 KPRPTVRWLRNGEPLASQNRVEVLAGDLRF-----SKLSLEDSGMYQCVAENKHGTIYAS 374
Query: 435 CELSV 439
EL+V
Sbjct: 375 AELAV 379
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 108/264 (40%), Gaps = 52/264 (19%)
Query: 392 ENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS-----------HCSCELSVL 440
+ + + +Q GN Y ++ + D G ++CLA + + S + + E + L
Sbjct: 147 DGRHFVSQTTGNLY---IARTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDTRL 203
Query: 441 VPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANP- 499
+ KA F E A++ +Q V+LEC G P P++ W K + + TA P
Sbjct: 204 FAPSIKA-RFPAETYALVGQQ--VTLECFAFGNPVPRIKWRKVDGSLSPQ---WTTAEPT 257
Query: 500 -KDPS----SLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFI 554
+ PS GTY CEA N G R+I + Q P ++
Sbjct: 258 LQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQ--------------------PEWL 297
Query: 555 KEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINY 614
K + + +A IG++ C P P ++ W + + ++ ++A L +
Sbjct: 298 KVISDTEADIGSNLRWGCAAAGKPRP-TVRWLRNGEPLASQNRVEVLAGDL-----RFSK 351
Query: 615 LEAVDDGEWKCVATSSSGVKQFSA 638
L D G ++CVA + G SA
Sbjct: 352 LSLEDSGMYQCVAENKHGTIYASA 375
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/349 (21%), Positives = 119/349 (34%), Gaps = 65/349 (18%)
Query: 28 NPKDPSSLGTYTCEAVNCMGAAFSTSRVIARG-QQSFLDNDDVPFNRAQG---------- 76
NP G Y C A N +G S ++ G Q F + P +G
Sbjct: 66 NPTKAQDAGVYQCLASNPVGTVVSREAILRFGFLQEFSKEERDPVKAHEGWGVMLPCNPP 125
Query: 77 -DHPIFGNRF------RAINRDGR-------TELNIRRVRRDDGGRYSVTASNESGYST- 121
+P R+ I DGR L I R D G YS A++ +ST
Sbjct: 126 AHYPGLSYRWLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATSHMDFSTK 185
Query: 122 ------AKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTI 175
A+ L+ E RL ++K A + ++C F N +
Sbjct: 186 SVFSKFAQLNLAAEDT---------RLFAPSIKARFPAETYALVGQQVTLEC-FAFGNPV 235
Query: 176 PFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
P + D + A L I V +D G Y A N G T + + V
Sbjct: 236 PRIKWRKVDGSLSPQWTTA-----EPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIV 290
Query: 236 ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF 295
++Q P +++ + D +G+ R ++ L N P + +
Sbjct: 291 QAQ----PEWLKVISDTEADIGSNLRWGCAAAGKPRPTVRW-LRNGEPLASQ-------- 337
Query: 296 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
NR + D L ++ +D G Y A N+ G A EL+V++
Sbjct: 338 -NRVEVLAGD----LRFSKLSLEDSGMYQCVAENKHGTIYASAELAVQA 381
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 25/106 (23%)
Query: 864 VNLECKVIGVPQPTLKWFKDGRELK--AGDIHKIISG----------EDGTCCLGIYTCE 911
V L C+ P T +W +G E+K G H+++ G +D G+Y C
Sbjct: 24 VLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVIMNPTKAQDA----GVYQCL 79
Query: 912 AHNCMGTTSSSAALLGF--------EDKSQIEKAEEGKKALIVKDP 949
A N +GT S A+L F E++ + KA EG ++ +P
Sbjct: 80 ASNPVGTVVSREAILRFGFLQEFSKEERDPV-KAHEGWGVMLPCNP 124
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 86/199 (43%), Gaps = 31/199 (15%)
Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH 806
KAP L++ A V E F V P+P++SW R+ + D ++E +
Sbjct: 6 KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQL-- 63
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSC-FLKLNV-PKHYKKP---KFLEELKAVLSEG 861
L I ++E +D + C A N G ++ SC L++ + PK + P K +E LKAVL
Sbjct: 64 LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLP-- 121
Query: 862 GAVNLECKVIGVPQPTLKWFKDGRELKAGD-----------IHKIISGEDGTCCLGIYTC 910
C +G P+P++ W K L+ IH + ED G Y C
Sbjct: 122 ------CTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHN-VQKEDA----GQYRC 170
Query: 911 EAHNCMGTTSSSAALLGFE 929
A N +GT S L E
Sbjct: 171 VAKNSLGTAYSKLVKLEVE 189
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 80/187 (42%), Gaps = 27/187 (14%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASD-KYHIMADGLGGY 608
AP+ +E V A + A C V P P I W + +++ D +Y I +G
Sbjct: 7 APVITTPLETVDALVEEVATFMCAVESYPQPE-ISWTRNKILIKLFDTRYSIRENG---Q 62
Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLM-PKNYRKP---RFVESLKAVMTD 664
+ I +E DDG + C A + G S + V M PK R P + +E LKAV+
Sbjct: 63 LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVL-- 120
Query: 665 DGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCVAKN 714
C +G P P++ W K + L+ + + SL G Y CVAKN
Sbjct: 121 ------PCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKN 174
Query: 715 VMGKAES 721
+G A S
Sbjct: 175 SLGTAYS 181
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 79/187 (42%), Gaps = 18/187 (9%)
Query: 345 QVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHD--G 402
++P AP L + V A + + S + +I W RN + K++ T++
Sbjct: 3 KLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILI---KLFDTRYSIRE 59
Query: 403 NFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC-ELSV-LVPKAYKAPFFTKELEAILTE 460
N + + SV D G + C A N VG + SC L V + PK + P K +E +
Sbjct: 60 NGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGL--- 116
Query: 461 QGTVSLECKVMGIPTPQLIWYK------DNKKIKAGDIFALTANPKDPSSLGTYTCEAVN 514
L C MG P P + W K +N +I + +L + G Y C A N
Sbjct: 117 --KAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKN 174
Query: 515 CMGAAFS 521
+G A+S
Sbjct: 175 SLGTAYS 181
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 81/198 (40%), Gaps = 44/198 (22%)
Query: 663 TDDGLV----SFECKVVGFPTPTLQWFKDNEELKPGDV-YQLTGTSSL-----------G 706
T D LV +F C V +P P + W ++ +K D Y + L G
Sbjct: 16 TVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDG 75
Query: 707 SYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKS---CQATVN 763
YCC A N +G A S ++ ++ + K IEGLK+ C N
Sbjct: 76 IYCCTANNGVGGAVESCGALQVKMKPKITRPPINV--------KIIEGLKAVLPCTTMGN 127
Query: 764 EEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCI 823
P+P VSW + D + E+ + +L+ L+IH ++ D +++C+
Sbjct: 128 ------------PKPSVSWIKGDSALRENSRIAVLESG----SLRIHNVQKEDAGQYRCV 171
Query: 824 ATNDFGQSITSCFLKLNV 841
A N G + + +KL V
Sbjct: 172 AKNSLGTAYSK-LVKLEV 188
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 20/111 (18%)
Query: 851 LEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKA----------GDIHKIISGED 900
LE + A++ E C V PQP + W ++ +K G + I+S ED
Sbjct: 14 LETVDALVEE--VATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVED 71
Query: 901 GTCCLGIYTCEAHNCMGTTSSSAALLGFEDKSQIE------KAEEGKKALI 945
GIY C A+N +G S L + K +I K EG KA++
Sbjct: 72 SD--DGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVL 120
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 91/427 (21%), Positives = 158/427 (37%), Gaps = 80/427 (18%)
Query: 447 APFFTKELEAILTEQGT----VSLECKVMGIPTPQLIWYKDNKKIK----------AGDI 492
P F ++ L +G+ V+L C+ P W + ++K AGD+
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63
Query: 493 FALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPI 552
+ +NP G+Y C A N G S + G FL F++
Sbjct: 64 --VISNPVKAKDAGSYQCVATNARGTVVSREASLRFG---FLQE----FSA--------- 105
Query: 553 FIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY--NKEGVVEASDKYHIMADGLGGYSI 610
+E + VK G + C P +P Y + N+ +D ++ G ++
Sbjct: 106 --EERDPVKITEGWGVMFTCSP-PPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG--NL 160
Query: 611 EINYLEAVDDGEWKCVATSSSGV---KQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG- 666
I EA D G + C ATS FS L ++ R+ + S+KA D
Sbjct: 161 YIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQ--YAPSIKAKFPADTY 218
Query: 667 -----LVSFECKVVGFPTPTLQWFK-DNEEL------KPGDVYQLTGTSSLGSYCCVAKN 714
+V+ EC G P P ++W K D + +P Q G+Y C A+N
Sbjct: 219 ALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAEN 278
Query: 715 VMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSI 774
+ G+ ++ I + P +++ + +A + + +++ S
Sbjct: 279 IKGRDTYQGRIII------------------HAQPDWLDVITDTEADIGSDLRWSCVASG 320
Query: 775 SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITS 834
P P V W RD Q + + +++ L+ L + D ++C+A N G S
Sbjct: 321 KPRPAVRWLRDGQPLASQNRIEV-----SGGELRFSKLVLEDSGMYQCVAENKHGTVYAS 375
Query: 835 CFLKLNV 841
L +
Sbjct: 376 AELTVQA 382
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 88/359 (24%), Positives = 141/359 (39%), Gaps = 65/359 (18%)
Query: 597 KYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVE 656
+Y ++A L + N ++A D G ++CVAT++ G A + + + E
Sbjct: 55 RYRLVAGDL----VISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFS----AE 106
Query: 657 SLKAVMTDDGL-VSFECKVV-GFPTPTLQWFKDN-EELKPGD----VYQLTG-------- 701
V +G V F C +P + +W + P D V Q TG
Sbjct: 107 ERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTE 166
Query: 702 TSSLGSYCCVA--------KNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIE 753
S LG+Y C A K+V K S L ED R + K P
Sbjct: 167 ASDLGNYSCFATSHIDFITKSVFSKF-SQLSLAAEDARQYAPS-------IKAKFPADTY 218
Query: 754 GLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILK-ETLGVCHLKIHAL 812
L T+ E F F +P P++ W + D S K L E L L I +
Sbjct: 219 ALTGQMVTL-ECFAFG-----NPVPQIKWRKLDG----SQTSKWLSSEPL----LHIQNV 264
Query: 813 EVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSE-GGAVNLECKVI 871
+ D+ ++C A N G+ + ++ +P +L+ + ++ G + C
Sbjct: 265 DFEDEGTYECEAENIKGRDTYQGRIIIHA-----QPDWLDVITDTEADIGSDLRWSCVAS 319
Query: 872 GVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL-----GIYTCEAHNCMGTTSSSAAL 925
G P+P ++W +DG+ L + + ++ GE L G+Y C A N GT +SA L
Sbjct: 320 GKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAEL 378
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 76/334 (22%), Positives = 134/334 (40%), Gaps = 46/334 (13%)
Query: 416 DSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAI-LTEQGTVSLECKVM-GI 473
D+G + C+A NA G + S E S+ + F +E + + +TE V C
Sbjct: 73 DAGSYQCVATNARG-TVVSREASLRF--GFLQEFSAEERDPVKITEGWGVMFTCSPPPHY 129
Query: 474 PTPQLIWY---------KDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSR 524
P W D ++ + L + S LG Y+C A + + F T
Sbjct: 130 PALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHID--FITKS 187
Query: 525 VIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIY 584
V ++ Q L +D P I K + A G LEC P P+ I
Sbjct: 188 VFSKFSQLSLAAEDA--RQYAPS----IKAKFPADTYALTGQMVTLECFAFGNPVPQ-IK 240
Query: 585 WYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL 644
W +G + K+ + ++ L + I ++ D+G ++C A + G + +
Sbjct: 241 WRKLDG--SQTSKW-LSSEPL----LHIQNVDFEDEGTYECEAENIKGRDTYQGRIII-- 291
Query: 645 MPKNYRKPRFVESLKAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGT- 702
+ +P +++ + D G + + C G P P ++W +D + L + +++G
Sbjct: 292 ----HAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGE 347
Query: 703 ---SSL-----GSYCCVAKNVMGKAESSTQLTIE 728
S L G Y CVA+N G +S +LT++
Sbjct: 348 LRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 10/131 (7%)
Query: 310 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 369
L+I+ V +D G Y A N G T + + + +Q P ++ + D +G+ R
Sbjct: 259 LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQ----PDWLDVITDTEADIGSDLRW 314
Query: 370 LVEIRSPTEIKIHWYRNDRKL-EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAV 428
+ W R+ + L +N+I + + F S + L DSG + C+AEN
Sbjct: 315 SCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRF-----SKLVLEDSGMYQCVAENKH 369
Query: 429 GRSHCSCELSV 439
G + S EL+V
Sbjct: 370 GTVYASAELTV 380
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 57/155 (36%), Gaps = 29/155 (18%)
Query: 1 MGIPTPQLIWYK----DNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 56
G P PQ+ W K K + + N D GTY CEA N G R+I
Sbjct: 232 FGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQN-VDFEDEGTYECEAENIKGRDTYQGRII 290
Query: 57 ARGQQSFLD---------NDDVPFNRAQGDHPIFGNRFRAINRDGRT------------E 95
Q +LD D+ ++ P R+ RDG+ E
Sbjct: 291 IHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWL---RDGQPLASQNRIEVSGGE 347
Query: 96 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 130
L ++ +D G Y A N+ G A EL+V++
Sbjct: 348 LRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 39/95 (41%), Gaps = 16/95 (16%)
Query: 848 PKFLEE-LKAVLSEGGA---VNLECKVIGVPQPTLKWFKDGRELK----------AGDIH 893
P F E+ + EG A V L C+ P T +W +G ELK AGD+
Sbjct: 5 PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL- 63
Query: 894 KIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGF 928
+IS G Y C A N GT S A L F
Sbjct: 64 -VISNPVKAKDAGSYQCVATNARGTVVSREASLRF 97
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 82/190 (43%), Gaps = 30/190 (15%)
Query: 756 KSCQATV--NEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALE 813
KS AT EE F+ + S SPEP +SWFR+ +++E + ILK + L + +
Sbjct: 10 KSFNATAERGEEMTFSCRASGSPEPAISWFRNG-KLIEENEKYILKGS--NTELTVRNII 66
Query: 814 VADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGV 873
+D + C ATN G+ FL++ V +P ++ E G V L C G
Sbjct: 67 NSDGGPYVCRATNKAGEDEKQAFLQVFV-----QPHIIQLKNETTYENGQVTLVCDAEGE 121
Query: 874 PQPTLKW--------FKDGRELKAGDIHKIISGEDGTCCL----------GIYTCEAHNC 915
P P + W F +G + G I + G+ G+ L G Y CEA +
Sbjct: 122 PIPEITWKRAVDGFTFTEGDKSLDGRIE--VKGQHGSSSLHIKDVKLSDSGRYDCEAASR 179
Query: 916 MGTTSSSAAL 925
+G S L
Sbjct: 180 IGGHQKSMYL 189
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 61/163 (37%), Gaps = 35/163 (21%)
Query: 378 EIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCEL 437
E I W+RN + +EEN+ Y + G+ + + ++ D G + C A N G L
Sbjct: 33 EPAISWFRNGKLIEENEKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 90
Query: 438 SVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTA 497
V V P + E G V+L C G P P++ W +A D F T
Sbjct: 91 QVFV-----QPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWK------RAVDGFTFTE 139
Query: 498 NPKD------------PSSL----------GTYTCEAVNCMGA 518
K SSL G Y CEA + +G
Sbjct: 140 GDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGG 182
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 81/202 (40%), Gaps = 34/202 (16%)
Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGY 608
PA ++ N A+ G C+ P P +I W+ ++E ++KY L G
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEP-AISWFRNGKLIEENEKYI-----LKGS 56
Query: 609 SIEINYLEAV--DDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG 666
+ E+ + D G + C AT+ +G + A++ V + +P ++ ++G
Sbjct: 57 NTELTVRNIINSDGGPYVCRATNKAGEDE-KQAFLQVFV-----QPHIIQLKNETTYENG 110
Query: 667 LVSFECKVVGFPTPTLQWFK--DNEELKPGD--------VYQLTGTSSL----------G 706
V+ C G P P + W + D GD V G+SSL G
Sbjct: 111 QVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSG 170
Query: 707 SYCCVAKNVMGKAESSTQLTIE 728
Y C A + +G + S L IE
Sbjct: 171 RYDCEAASRIGGHQKSMYLDIE 192
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 73/189 (38%), Gaps = 36/189 (19%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGT-----------SSLGSYCCVAKNVM 716
++F C+ G P P + WF++ + ++ + Y L G+ S G Y C A N
Sbjct: 22 MTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKA 81
Query: 717 GKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISP 776
G E++K L P I+ LK+ N + P
Sbjct: 82 G------------------EDEKQAFLQVFVQPHIIQ-LKNETTYENGQVTLVCDAEGEP 122
Query: 777 EPKVSWFR--DDQQVVESD---NVKI-LKETLGVCHLKIHALEVADQAEWKCIATNDFGQ 830
P+++W R D E D + +I +K G L I ++++D + C A + G
Sbjct: 123 IPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGG 182
Query: 831 SITSCFLKL 839
S +L +
Sbjct: 183 HQKSMYLDI 191
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 10/152 (6%)
Query: 86 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDI 145
+ I + TEL +R + DGG Y A+N++G + L V Q P I+ ++
Sbjct: 50 KYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ----PHIIQLKNET 105
Query: 146 AVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELN 204
+ G + P EI + ++ F+F +GD + G R + G + L+
Sbjct: 106 TYENGQVTLVCDAEGEPIPEITWKRAVDG---FTF-TEGDKSLDG-RIEVKGQHGSSSLH 160
Query: 205 IRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
I+ V+ D GRY A++ G L +E
Sbjct: 161 IKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 10/152 (6%)
Query: 193 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDI 252
+ I + TEL +R + DGG Y A+N++G + L V Q P I+ ++
Sbjct: 50 KYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ----PHIIQLKNET 105
Query: 253 AVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELN 311
+ G + P EI + ++ F+F +GD + G R + G + L+
Sbjct: 106 TYENGQVTLVCDAEGEPIPEITWKRAVDG---FTF-TEGDKSLDG-RIEVKGQHGSSSLH 160
Query: 312 IRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
I+ V+ D GRY A++ G L +E
Sbjct: 161 IKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 16/149 (10%)
Query: 300 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDI 359
+ I + TEL +R + DGG Y A+N++G + L V Q P I+ ++
Sbjct: 50 KYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ----PHIIQLKNET 105
Query: 360 AVKVGTRARLLVEIRSPTEIKIHWYR---------NDRKLEENKIYRTQHDGNFYFIDLS 410
+ G + L+ + +I W R D+ L+ + QH + I
Sbjct: 106 TYENG-QVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHI--K 162
Query: 411 SVSLFDSGRWTCLAENAVGRSHCSCELSV 439
V L DSGR+ C A + +G S L +
Sbjct: 163 DVKLSDSGRYDCEAASRIGGHQKSMYLDI 191
Score = 36.6 bits (83), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 58/164 (35%), Gaps = 37/164 (22%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKD-------PSSLGTYTCEAVNCMG------- 47
G P P + W+++ K I+ + + L + + S G Y C A N G
Sbjct: 30 GSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAF 89
Query: 48 -AAFSTSRVIARGQQSFLDNDDVP---------------------FNRAQGDHPIFGNRF 85
F +I ++ +N V F +GD + G R
Sbjct: 90 LQVFVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDG-RI 148
Query: 86 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
+ G + L+I+ V+ D GRY A++ G L +E
Sbjct: 149 EVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 464 VSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD-------PSSLGTYTCEAVNCM 516
++ C+ G P P + W+++ K I+ + + L + + S G Y C A N
Sbjct: 22 MTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKA 81
Query: 517 G 517
G
Sbjct: 82 G 82
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 1/141 (0%)
Query: 348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
+AP + + D+ K+G A+L +I I WYR ++L +++ Y+ DG + +
Sbjct: 6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTL 65
Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLE 467
+ + D G +TC+A N VG S +L + + + KE + T+ L
Sbjct: 66 TVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKE-KYYGAVGSTLRLH 124
Query: 468 CKVMGIPTPQLIWYKDNKKIK 488
+G P P + W+ K ++
Sbjct: 125 VMYIGRPVPAMTWFHGQKLLQ 145
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 78/188 (41%), Gaps = 14/188 (7%)
Query: 745 NNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGV 804
+ +AP + +K + E + + Q+ P P + W+R +++++S K+ + G
Sbjct: 4 SGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSD--GR 61
Query: 805 CH-LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGA 863
H L + E D+ + CIATN+ G+ TS L L + P + + K + G
Sbjct: 62 THTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQF-HPGYPLKEKYYGAVGST 120
Query: 864 VNLECKVIGVPQPTLKWFKDGRELKAGD----------IHKIISGEDGTCCLGIYTCEAH 913
+ L IG P P + WF + L+ + H ++ G Y +
Sbjct: 121 LRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLS 180
Query: 914 NCMGTTSS 921
N GT +
Sbjct: 181 NVFGTVDA 188
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 18/196 (9%)
Query: 548 GPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGG 607
G AP KE+++V K+G +A L CQ++ P P I WY + S KY + +DG
Sbjct: 5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLP-DIKWYRFGKELIQSRKYKMSSDGR-T 62
Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGL 667
+++ + E D+G + C+AT+ G + S+ + P+ + P + K
Sbjct: 63 HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFH--PGYPLKEKYYGAVGST 120
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGT--------------SSLGSYCCVAK 713
+ +G P P + WF + L+ + + T + G Y
Sbjct: 121 LRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLS 180
Query: 714 NVMGKAESSTQLTIED 729
NV G ++ + I+D
Sbjct: 181 NVFGTVDAILDVEIQD 196
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 10/89 (11%)
Query: 848 PKFLEELKAVLSE-GGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIIS-GEDGTCCL 905
P +E+K V ++ G A L C+++G P P +KW++ G+EL +K+ S G T +
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTV 67
Query: 906 --------GIYTCEAHNCMGTTSSSAALL 926
G+YTC A N +G +S+ LL
Sbjct: 68 MTEEQEDEGVYTCIATNEVGEVETSSKLL 96
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 446 KAPFFTKELEAILTEQGTVS-LECKVMGIPTPQLIWYKDNKKI---------KAGDIFAL 495
+AP KE++ + T+ G + L C+++G P P + WY+ K++ G L
Sbjct: 6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTL 65
Query: 496 TANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSF 533
T ++ G YTC A N +G ++S+++ + F
Sbjct: 66 TVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQF 103
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 1 MGIPTPQLIWYKDNKKI---------KAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFS 51
+G P P + WY+ K++ G LT ++ G YTC A N +G +
Sbjct: 32 VGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVET 91
Query: 52 TSRVIARGQQSF 63
+S+++ + F
Sbjct: 92 SSKLLLQATPQF 103
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 80/195 (41%), Gaps = 22/195 (11%)
Query: 241 DAPAFIRRLHDIAVKVGTRARLLVEI--RSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNR 298
+AP + + D+ K+G A+L +I R +IK + F + + +R
Sbjct: 6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKW---------YRFGKE----LIQSR 52
Query: 299 FRAINRDGRTE-LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 357
++ DGRT L + ++D G Y+ A+NE G +L +++ P + +
Sbjct: 53 KYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEK 112
Query: 358 DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENK---IYRTQHDGNFYFIDLSSVSL 414
VG+ RL V + W+ + L+ ++ I T+H + ++ +
Sbjct: 113 YYGA-VGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKT- 170
Query: 415 FDSGRWTCLAENAVG 429
+G++ N G
Sbjct: 171 -HAGKYKVQLSNVFG 184
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 23/177 (12%)
Query: 768 FTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH-LKIHALEVA-DQAEWKCIAT 825
F Q + P+P+++W + ++V S ++++ G L+I L V D+A ++C AT
Sbjct: 27 FVCQATGEPKPRITWMKKGKKV-SSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTAT 85
Query: 826 NDFGQSITSCFLKL----NVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWF 881
N G+ TS L + +P + +LK V+ +G + C G P P + WF
Sbjct: 86 NSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLK-VVEKGRTATMLCAAGGNPDPEISWF 144
Query: 882 KD----------GR--ELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALL 926
KD GR +L++G + I S E+ G Y C A N GT S+ A L
Sbjct: 145 KDFLPVDPAASNGRIKQLRSGALQ-IESSEESD--QGKYECVATNSAGTRYSAPANL 198
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 16/187 (8%)
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHD---GNFYF 406
P F++ D G A + + + +I W + +K+ + + D G+
Sbjct: 8 PVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLR 67
Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAIL--TEQG-T 463
I V D + C A N++G + S +LSVL + F T ++ L E+G T
Sbjct: 68 IQPLRVQR-DEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRT 126
Query: 464 VSLECKVMGIPTPQLIWYKD---------NKKIKAGDIFALTANPKDPSSLGTYTCEAVN 514
++ C G P P++ W+KD N +IK AL + S G Y C A N
Sbjct: 127 ATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATN 186
Query: 515 CMGAAFS 521
G +S
Sbjct: 187 SAGTRYS 193
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 87/202 (43%), Gaps = 32/202 (15%)
Query: 646 PKNYRKPRFVESLK-AVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSS 704
P + KP FV+ + G+ SF C+ G P P + W K +++ +
Sbjct: 2 PGSDSKPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDG 61
Query: 705 LGS---------------YCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLL--LLTNNK 747
GS Y C A N +G+ +S +L++ EED+L T +
Sbjct: 62 AGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSV-------LEEDQLPSGFPTIDM 114
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
P+ K AT+ +P+P++SWF+D V + + +K+ L L
Sbjct: 115 GPQLKVVEKGRTATM------LCAAGGNPDPEISWFKDFLPVDPAASNGRIKQ-LRSGAL 167
Query: 808 KIHALEVADQAEWKCIATNDFG 829
+I + E +DQ +++C+ATN G
Sbjct: 168 QIESSEESDQGKYECVATNSAG 189
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMA-DGLGGYS 609
P+F+K E+ G A CQ P PR I W K+G +S ++ ++ D G
Sbjct: 8 PVFVKVPEDQTGLSGGVASFVCQATGEPKPR-ITWM-KKGKKVSSQRFEVIEFDDGAGSV 65
Query: 610 IEINYLEAV-DDGEWKCVATSSSGVKQFSAAYVHVL----MPKNYRKPRFVESLKAVMTD 664
+ I L D+ ++C AT+S G + ++A + VL +P + LK V+
Sbjct: 66 LRIQPLRVQRDEAIYECTATNSLG-EINTSAKLSVLEEDQLPSGFPTIDMGPQLK-VVEK 123
Query: 665 DGLVSFECKVVGFPTPTLQWFKDNEELKP----GDVYQL---------TGTSSLGSYCCV 711
+ C G P P + WFKD + P G + QL + S G Y CV
Sbjct: 124 GRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECV 183
Query: 712 AKNVMG 717
A N G
Sbjct: 184 ATNSAG 189
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 29/215 (13%)
Query: 442 PKAYKAPFFTKELEAILTEQGTV-SLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPK 500
P + P F K E G V S C+ G P P++ W K KK+ + + +
Sbjct: 2 PGSDSKPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDG 61
Query: 501 DPSSL-----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFN-SLMPPG 548
S L Y C A N +G +++++ S L+ D +P + G
Sbjct: 62 AGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKL------SVLEEDQLPSGFPTIDMG 115
Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGY 608
P +K VE G +A + C P P ++ + V A+ I L
Sbjct: 116 PQ---LKVVEK-----GRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQ--LRSG 165
Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
+++I E D G+++CVAT+S+G + + A ++V
Sbjct: 166 ALQIESSEESDQGKYECVATNSAGTRYSAPANLYV 200
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 16/103 (15%)
Query: 842 PKHYKKPKFLE--ELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGE 899
P KP F++ E + LS GG + C+ G P+P + W K G+++ + ++I +
Sbjct: 2 PGSDSKPVFVKVPEDQTGLS-GGVASFVCQATGEPKPRITWMKKGKKVSS-QRFEVIEFD 59
Query: 900 DGTCCL------------GIYTCEAHNCMGTTSSSAALLGFED 930
DG + IY C A N +G ++SA L E+
Sbjct: 60 DGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEE 102
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 2 GIPTPQLIWYKD---------NKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFS 51
G P P++ W+KD N +IK AL + S G Y C A N G +S
Sbjct: 135 GNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYS 193
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 27/196 (13%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN--KIYRTQ-HDGN-F 404
+P I D+ VK A L ++ E I W+++ + N K +R Q DG F
Sbjct: 9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68
Query: 405 YFIDLSSVSLFDSGRWTCLAENAVGRS---HCSCELSVLVPKAYKAPFFTKELEAILTEQ 461
++ + D G + C+A+N VG++ H S +++VL + F + + + +
Sbjct: 69 FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVL-----RDDFRVEPKDTRVAKG 123
Query: 462 GTVSLEC-KVMGIPTPQLIWYKD--------------NKKIKAGDIFALTANPKDPSSLG 506
T LEC GIP P LIW KD + +++ D L + +P G
Sbjct: 124 ETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183
Query: 507 TYTCEAVNCMGAAFST 522
Y C A N +G S+
Sbjct: 184 NYKCIAQNLVGTRESS 199
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 24/205 (11%)
Query: 742 LLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVV----ESDNVKI 797
L ++P+ IE NE +V PEP + WF+D + V +S V+
Sbjct: 3 LAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQ- 61
Query: 798 LKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT-SCFLKLNVPKHYKKPKFLEELKA 856
K+ + + + D E+ C+A N GQ+++ L++ V + + +E
Sbjct: 62 FKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFR---VEPKDT 118
Query: 857 VLSEGGAVNLEC-KVIGVPQPTLKWFKDG---RELKA---GDIHKIISGEDGTCCL---- 905
+++G LEC G+P+PTL W KDG +LKA G ++ + G +
Sbjct: 119 RVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVE 178
Query: 906 ----GIYTCEAHNCMGTTSSSAALL 926
G Y C A N +GT SS A L
Sbjct: 179 PIDEGNYKCIAQNLVGTRESSYAKL 203
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 88/220 (40%), Gaps = 46/220 (20%)
Query: 648 NYRKPRFVE-SLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNE------------ELKPG 694
Y+ PR +E V+ + + CKV G P PT++WFKD E + K G
Sbjct: 6 QYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDG 65
Query: 695 DVY-----QLTGTSSLGSYCCVAKNVMGKAES-STQLTIEDIRNHLSEEDKLLLLTNNKA 748
++ Q G Y CVAKN +G+A S L I +R+ E K + +
Sbjct: 66 ALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPK-----DTRV 120
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILK-------ET 801
K L C PEP + W +D V D++K +
Sbjct: 121 AKGETALLECGPPKG-----------IPEPTLIWIKDG---VPLDDLKAMSFGASSRVRI 166
Query: 802 LGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
+ +L I +E D+ +KCIA N G + S + KL V
Sbjct: 167 VDGGNLLISNVEPIDEGNYKCIAQNLVG-TRESSYAKLIV 205
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 91/222 (40%), Gaps = 46/222 (20%)
Query: 445 YKAP-FFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD------------ 491
Y++P + ++ + +L CKV G P P + W+KD + + +
Sbjct: 7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGA 66
Query: 492 -IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPA 550
F T K G Y C A N +G A S A Q + L +D
Sbjct: 67 LFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRH---ASLQIAVLRDD------------- 110
Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPP--WPRSIYWYNKEGVVEASDKYHIMADG---- 604
F E ++ + G +A+LEC PP P + K+GV D M+ G
Sbjct: 111 --FRVEPKDTRVAKGETALLECG---PPKGIPEPTLIWIKDGV--PLDDLKAMSFGASSR 163
Query: 605 ---LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
+ G ++ I+ +E +D+G +KC+A + G ++ S A + V
Sbjct: 164 VRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV 205
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 80/205 (39%), Gaps = 28/205 (13%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMA--DGLGG 607
+P I+ ++ K A L C+V P P ++ + E V K H + DG
Sbjct: 9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68
Query: 608 YSIEINYLEAVDDGEWKCVATSSSG--VKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDD 665
+ + + D GE+ CVA + G V + ++ + VL ++R VE +
Sbjct: 69 FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLR-DDFR----VEPKDTRVAKG 123
Query: 666 GLVSFEC-KVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL------------------G 706
EC G P PTL W KD L +S + G
Sbjct: 124 ETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183
Query: 707 SYCCVAKNVMGKAESSTQLTIEDIR 731
+Y C+A+N++G ESS I ++
Sbjct: 184 NYKCIAQNLVGTRESSYAKLIVQVK 208
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 18/130 (13%)
Query: 316 RRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR---RLHDIAVKVGTRARLLVE 372
+ DGG Y A N G + ++ Q+ A +R R+ +V L+E
Sbjct: 77 KEQDGGEYWCVAKNRVGQAVSRH---ASLQI----AVLRDDFRVEPKDTRVAKGETALLE 129
Query: 373 IRSPTEI---KIHWYRNDRKLEENKIYRTQHDGNFYFID-----LSSVSLFDSGRWTCLA 424
P I + W ++ L++ K +D +S+V D G + C+A
Sbjct: 130 CGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIA 189
Query: 425 ENAVGRSHCS 434
+N VG S
Sbjct: 190 QNLVGTRESS 199
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 27/196 (13%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN--KIYRTQ-HDGN-F 404
+P I D+ VK A L ++ E I W+++ + N K +R Q DG F
Sbjct: 9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68
Query: 405 YFIDLSSVSLFDSGRWTCLAENAVGRS---HCSCELSVLVPKAYKAPFFTKELEAILTEQ 461
++ + D G + C+A+N VG++ H S +++VL + F + + + +
Sbjct: 69 FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVL-----RDDFRVEPKDTRVAKG 123
Query: 462 GTVSLEC-KVMGIPTPQLIWYKD--------------NKKIKAGDIFALTANPKDPSSLG 506
T LEC GIP P LIW KD + +++ D L + +P G
Sbjct: 124 ETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183
Query: 507 TYTCEAVNCMGAAFST 522
Y C A N +G S+
Sbjct: 184 NYKCIAQNLVGTRESS 199
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 24/205 (11%)
Query: 742 LLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVV----ESDNVKI 797
L ++P+ IE NE +V PEP + WF+D + V +S V+
Sbjct: 3 LAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQ- 61
Query: 798 LKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT-SCFLKLNVPKHYKKPKFLEELKA 856
K+ + + + D E+ C+A N GQ+++ L++ V + + +E
Sbjct: 62 FKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFR---VEPKDT 118
Query: 857 VLSEGGAVNLEC-KVIGVPQPTLKWFKDG---RELKA---GDIHKIISGEDGTCCL---- 905
+++G LEC G+P+PTL W KDG +LKA G ++ + G +
Sbjct: 119 RVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVE 178
Query: 906 ----GIYTCEAHNCMGTTSSSAALL 926
G Y C A N +GT SS A L
Sbjct: 179 PIDEGNYKCIAQNLVGTRESSYAKL 203
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 88/220 (40%), Gaps = 46/220 (20%)
Query: 648 NYRKPRFVE-SLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNE------------ELKPG 694
Y+ PR +E V+ + + CKV G P PT++WFKD E + K G
Sbjct: 6 QYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDG 65
Query: 695 DVY-----QLTGTSSLGSYCCVAKNVMGKAES-STQLTIEDIRNHLSEEDKLLLLTNNKA 748
++ Q G Y CVAKN +G+A S L I +R+ E K + +
Sbjct: 66 ALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPK-----DTRV 120
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILK-------ET 801
K L C PEP + W +D V D++K +
Sbjct: 121 AKGETALLECGPPKG-----------IPEPTLIWIKDG---VPLDDLKAMSFGASSRVRI 166
Query: 802 LGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
+ +L I +E D+ +KCIA N G + S + KL V
Sbjct: 167 VDGGNLLISNVEPIDEGNYKCIAQNLVG-TRESSYAKLIV 205
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 91/222 (40%), Gaps = 46/222 (20%)
Query: 445 YKAP-FFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD------------ 491
Y++P + ++ + +L CKV G P P + W+KD + + +
Sbjct: 7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGA 66
Query: 492 -IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPA 550
F T K G Y C A N +G A S A Q + L +D
Sbjct: 67 LFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRH---ASLQIAVLRDD------------- 110
Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPP--WPRSIYWYNKEGVVEASDKYHIMADG---- 604
F E ++ + G +A+LEC PP P + K+GV D M+ G
Sbjct: 111 --FRVEPKDTRVAKGETALLECG---PPKGIPEPTLIWIKDGV--PLDDLKAMSFGASSR 163
Query: 605 ---LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
+ G ++ I+ +E +D+G +KC+A + G ++ S A + V
Sbjct: 164 VRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV 205
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 80/205 (39%), Gaps = 28/205 (13%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMA--DGLGG 607
+P I+ ++ K A L C+V P P ++ + E V K H + DG
Sbjct: 9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68
Query: 608 YSIEINYLEAVDDGEWKCVATSSSG--VKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDD 665
+ + + D GE+ CVA + G V + ++ + VL ++R VE +
Sbjct: 69 FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLR-DDFR----VEPKDTRVAKG 123
Query: 666 GLVSFEC-KVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL------------------G 706
EC G P PTL W KD L +S + G
Sbjct: 124 ETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183
Query: 707 SYCCVAKNVMGKAESSTQLTIEDIR 731
+Y C+A+N++G ESS I ++
Sbjct: 184 NYKCIAQNLVGTRESSYAKLIVQVK 208
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 18/130 (13%)
Query: 316 RRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR---RLHDIAVKVGTRARLLVE 372
+ DGG Y A N G + ++ Q+ A +R R+ +V L+E
Sbjct: 77 KEQDGGEYWCVAKNRVGQAVSRH---ASLQI----AVLRDDFRVEPKDTRVAKGETALLE 129
Query: 373 IRSPTEI---KIHWYRNDRKLEENKIYRTQHDGNFYFID-----LSSVSLFDSGRWTCLA 424
P I + W ++ L++ K +D +S+V D G + C+A
Sbjct: 130 CGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIA 189
Query: 425 ENAVGRSHCS 434
+N VG S
Sbjct: 190 QNLVGTRESS 199
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 79/189 (41%), Gaps = 17/189 (8%)
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRT--QHDGNFYFI 407
P IR+ + V+VG A R I W +N +K+ + T + G +
Sbjct: 7 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 66
Query: 408 DLSSV-SLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAP----FFTKELEAILTEQG 462
+ V + D + C+AEN VG + S + ++ + + K P T+ + E G
Sbjct: 67 RIEPVRAGRDDAPYECVAENGVGDA-VSADATLTIYEGDKTPAGFPVITQGPGTRVIEVG 125
Query: 463 -TVSLECKVMGIPTPQLIWYKDNKKIKAG-------DIFALTANPKDPSSLGTYTCEAVN 514
TV + CK +G PTP + W K+ K+ D F N ++ G Y C A N
Sbjct: 126 HTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSRE-EDQGKYECVAEN 184
Query: 515 CMGAAFSTS 523
MG S +
Sbjct: 185 SMGTEHSKA 193
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 81/195 (41%), Gaps = 31/195 (15%)
Query: 462 GTVSLECKVMGIPTPQLIWYKDNKKI-----------KAGDIFALTANP-KDPSSLGTYT 509
G S C G P P ++W K+ KK+ + G I L P + Y
Sbjct: 22 GVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYE 81
Query: 510 CEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFN-SLMPPGPAPIFIKEVENVKAKIGTSA 568
C A N +G A S + + + D P ++ GP I+ +G +
Sbjct: 82 CVAENGVGDAVSADATL-----TIYEGDKTPAGFPVITQGPGTRVIE--------VGHTV 128
Query: 569 ILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVAT 628
++ C+ + P P +IYW + V+ S+ + + DG ++I D G+++CVA
Sbjct: 129 LMTCKAIGNPTP-NIYWIKNQTKVDMSNPRYSLKDGF----LQIENSREEDQGKYECVAE 183
Query: 629 SSSGVKQFSAAYVHV 643
+S G + A ++V
Sbjct: 184 NSMGTEHSKATNLYV 198
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 81/198 (40%), Gaps = 18/198 (9%)
Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDN-VKILKETL 802
T P+ I ++ V F P P + W ++ ++V + + +L++
Sbjct: 2 TGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG 61
Query: 803 GVCHLKIHALEVA-DQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKA----- 856
G+ L+I + D A ++C+A N G ++ S L + + K P +
Sbjct: 62 GISILRIEPVRAGRDDAPYECVAENGVGDAV-SADATLTIYEGDKTPAGFPVITQGPGTR 120
Query: 857 VLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL--------GIY 908
V+ G V + CK IG P P + W K+ + K + S +DG + G Y
Sbjct: 121 VIEVGHTVLMTCKAIGNPTPNIYWIKN--QTKVDMSNPRYSLKDGFLQIENSREEDQGKY 178
Query: 909 TCEAHNCMGTTSSSAALL 926
C A N MGT S A L
Sbjct: 179 ECVAENSMGTEHSKATNL 196
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 82/197 (41%), Gaps = 23/197 (11%)
Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSI 610
P I++ +N ++G A C P P SI W V + + + + GG SI
Sbjct: 7 PEIIRKPQNQGVRVGGVASFYCAARGDP-PPSIVWRKNGKKVSGTQSRYTVLEQPGGISI 65
Query: 611 -EINYLEAV-DDGEWKCVATSSSGVKQFSAAYVHVL----MPKNYRKPRFVESLKAVMTD 664
I + A DD ++CVA + G + A + + P + P + + +
Sbjct: 66 LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGF--PVITQGPGTRVIE 123
Query: 665 DG-LVSFECKVVGFPTPTLQWFKDNEE---------LKPGDVYQLTGT--SSLGSYCCVA 712
G V CK +G PTP + W K+ + LK G Q+ + G Y CVA
Sbjct: 124 VGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG-FLQIENSREEDQGKYECVA 182
Query: 713 KNVMGKAES-STQLTIE 728
+N MG S +T L ++
Sbjct: 183 ENSMGTEHSKATNLYVK 199
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 23/201 (11%)
Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLG 803
T + P FI+ + F Q + P+P+++W + ++V S ++++ G
Sbjct: 2 TGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKV-SSQRFEVIEFDDG 60
Query: 804 VCH-LKIHALEVA-DQAEWKCIATNDFGQSITSCFLKL----NVPKHYKKPKFLEELKAV 857
L+I L V D+A ++C ATN G+ TS L + +P + +LK V
Sbjct: 61 AGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLK-V 119
Query: 858 LSEGGAVNLECKVIGVPQPTLKWFKD----------GR--ELKAGDIHKIISGEDGTCCL 905
+ + + C G P P + WFKD GR +L++G + I S E+
Sbjct: 120 VEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQ-IESSEESD--Q 176
Query: 906 GIYTCEAHNCMGTTSSSAALL 926
G Y C A N GT S+ A L
Sbjct: 177 GKYECVATNSAGTRYSAPANL 197
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 18/188 (9%)
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHD---GNFYF 406
P FI+ D G A + + + +I W + +K+ + + D G+
Sbjct: 7 PVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLR 66
Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL----VPKAYKAPFFTKELEAILTEQG 462
I V D + C A N++G + S +LSVL +P + + +L+ ++ +
Sbjct: 67 IQPLRVQR-DEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLK-VVEKAR 124
Query: 463 TVSLECKVMGIPTPQLIWYKD---------NKKIKAGDIFALTANPKDPSSLGTYTCEAV 513
T ++ C G P P++ W+KD N +IK AL + S G Y C A
Sbjct: 125 TATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVAT 184
Query: 514 NCMGAAFS 521
N G +S
Sbjct: 185 NSAGTRYS 192
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 33/182 (18%)
Query: 666 GLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGS---------------YCC 710
G+ SF C+ G P P + W K +++ + GS Y C
Sbjct: 22 GVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYEC 81
Query: 711 VAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTV 770
A N +G+ +S +L++ EE++L P F Q V E+ +
Sbjct: 82 TATNSLGEINTSAKLSV-------LEEEQL-------PPGFPSIDMGPQLKVVEKARTAT 127
Query: 771 QVSIS---PEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND 827
+ + P+P++SWF+D V + + +K+ L L+I + E +DQ +++C+ATN
Sbjct: 128 MLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQ-LRSGALQIESSEESDQGKYECVATNS 186
Query: 828 FG 829
G
Sbjct: 187 AG 188
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMA-DGLGGYS 609
P+FIK E+ G A CQ P PR I W K+G +S ++ ++ D G
Sbjct: 7 PVFIKVPEDQTGLSGGVASFVCQATGEPKPR-ITWM-KKGKKVSSQRFEVIEFDDGAGSV 64
Query: 610 IEINYLEAV-DDGEWKCVATSSSGVKQFSAAYVHVL----MPKNYRKPRFVESLKAVMTD 664
+ I L D+ ++C AT+S G + ++A + VL +P + LK V+
Sbjct: 65 LRIQPLRVQRDEAIYECTATNSLG-EINTSAKLSVLEEEQLPPGFPSIDMGPQLK-VVEK 122
Query: 665 DGLVSFECKVVGFPTPTLQWFKDNEELKP----GDVYQL---------TGTSSLGSYCCV 711
+ C G P P + WFKD + P G + QL + S G Y CV
Sbjct: 123 ARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECV 182
Query: 712 AKNVMG 717
A N G
Sbjct: 183 ATNSAG 188
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 26/193 (13%)
Query: 462 GTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL-----------GTYTC 510
G S C+ G P P++ W K KK+ + + + S L Y C
Sbjct: 22 GVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYEC 81
Query: 511 EAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAIL 570
A N +G +++++ S L+ + +PPG I + V K T+ +L
Sbjct: 82 TATNSLGEINTSAKL------SVLEEEQ------LPPGFPSIDMGPQLKVVEKARTATML 129
Query: 571 ECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSS 630
C P P I W+ V+ + + G +++I E D G+++CVAT+S
Sbjct: 130 -CAAGGNPDPE-ISWFKDFLPVDPATSNGRIKQLRSG-ALQIESSEESDQGKYECVATNS 186
Query: 631 SGVKQFSAAYVHV 643
+G + + A ++V
Sbjct: 187 AGTRYSAPANLYV 199
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 16/99 (16%)
Query: 847 KPKFLE--ELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC 904
KP F++ E + LS GG + C+ G P+P + W K G+++ + ++I +DG
Sbjct: 6 KPVFIKVPEDQTGLS-GGVASFVCQATGEPKPRITWMKKGKKVSS-QRFEVIEFDDGAGS 63
Query: 905 L------------GIYTCEAHNCMGTTSSSAALLGFEDK 931
+ IY C A N +G ++SA L E++
Sbjct: 64 VLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEE 102
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 2 GIPTPQLIWYKD---------NKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFS 51
G P P++ W+KD N +IK AL + S G Y C A N G +S
Sbjct: 134 GNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYS 192
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 78/189 (41%), Gaps = 17/189 (8%)
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRT--QHDGNFYFI 407
P IR+ + V+VG A R I W +N +K+ + T + G +
Sbjct: 9 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 68
Query: 408 DLSSVSLF-DSGRWTCLAENAVGRSHCSCELSVLVPKAYKAP----FFTKELEAILTEQG 462
+ V D + C+AEN VG + S + ++ + + K P T+ + E G
Sbjct: 69 RIEPVRAGRDDAPYECVAENGVGDA-VSADATLTIYEGDKTPAGFPVITQGPGTRVIEVG 127
Query: 463 -TVSLECKVMGIPTPQLIWYKDNKKIKAG-------DIFALTANPKDPSSLGTYTCEAVN 514
TV + CK +G PTP + W K+ K+ D F N ++ G Y C A N
Sbjct: 128 HTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSRE-EDQGKYECVAEN 186
Query: 515 CMGAAFSTS 523
MG S +
Sbjct: 187 SMGTEHSKA 195
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 29/194 (14%)
Query: 462 GTVSLECKVMGIPTPQLIWYKDNKKI-----------KAGDIFALTANP-KDPSSLGTYT 509
G S C G P P ++W K+ KK+ + G I L P + Y
Sbjct: 24 GVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYE 83
Query: 510 CEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAI 569
C A N +G A S + + + D P P+ + ++G + +
Sbjct: 84 CVAENGVGDAVSADATL-----TIYEGDKTPAG-------FPVITQGPGTRVIEVGHTVL 131
Query: 570 LECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATS 629
+ C+ + P P +IYW + V+ S+ + + DG ++I D G+++CVA +
Sbjct: 132 MTCKAIGNPTP-NIYWIKNQTKVDMSNPRYSLKDGF----LQIENSREEDQGKYECVAEN 186
Query: 630 SSGVKQFSAAYVHV 643
S G + A ++V
Sbjct: 187 SMGTEHSKATNLYV 200
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 18/166 (10%)
Query: 776 PEPKVSWFRDDQQVVESDN-VKILKETLGVCHLKIHALEVA-DQAEWKCIATNDFGQSIT 833
P P + W ++ ++V + + +L++ G+ L+I + D A ++C+A N G ++
Sbjct: 36 PPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAV- 94
Query: 834 SCFLKLNVPKHYKKPKFLEELKA-----VLSEGGAVNLECKVIGVPQPTLKWFKDGRELK 888
S L + + K P + V+ G V + CK IG P P + W K+ + K
Sbjct: 95 SADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKN--QTK 152
Query: 889 AGDIHKIISGEDGTCCL--------GIYTCEAHNCMGTTSSSAALL 926
+ S +DG + G Y C A N MGT S A L
Sbjct: 153 VDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNL 198
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 82/197 (41%), Gaps = 23/197 (11%)
Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSI 610
P I++ +N ++G A C P P SI W V + + + + GG SI
Sbjct: 9 PEIIRKPQNQGVRVGGVASFYCAARGDP-PPSIVWRKNGKKVSGTQSRYTVLEQPGGISI 67
Query: 611 -EINYLEAV-DDGEWKCVATSSSGVKQFSAAYVHVL----MPKNYRKPRFVESLKAVMTD 664
I + A DD ++CVA + G + A + + P + P + + +
Sbjct: 68 LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGF--PVITQGPGTRVIE 125
Query: 665 DG-LVSFECKVVGFPTPTLQWFKDNEE---------LKPGDVYQLTGT--SSLGSYCCVA 712
G V CK +G PTP + W K+ + LK G Q+ + G Y CVA
Sbjct: 126 VGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG-FLQIENSREEDQGKYECVA 184
Query: 713 KNVMGKAES-STQLTIE 728
+N MG S +T L ++
Sbjct: 185 ENSMGTEHSKATNLYVK 201
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 79/201 (39%), Gaps = 45/201 (22%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKP----GDVYQLTGTSSL----------GSYCCVAK 713
V F+C G P PTL+W K+ +E KP G T S+ G+Y C+ +
Sbjct: 34 VKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVE 93
Query: 714 NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT-VNEEFKFTVQV 772
N G + QL + + H P GL + + + +F +V
Sbjct: 94 NEYGSINHTYQLDVVERSPH--------------RPILQAGLPANKTVALGSNVEFMCKV 139
Query: 773 SISPEPKVSWFRDDQ--------------QVVESDNVKILKETLGVCHLKIHALEVADQA 818
P+P + W + + Q++++ V + + V HL+ + E D
Sbjct: 140 YSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFE--DAG 197
Query: 819 EWKCIATNDFGQSITSCFLKL 839
E+ C+A N G S S +L +
Sbjct: 198 EYTCLAGNSIGLSHHSAWLTV 218
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 18/164 (10%)
Query: 291 DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 350
DH I G + R + + V D G Y+ NE G ++L V + P P
Sbjct: 60 DHRIGGYKVRY----ATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRP 115
Query: 351 AFIRRL-HDIAVKVGTRARLLVEIRSPTEIKIHWYR----NDRKLEENKIYRTQ------ 399
L + V +G+ + ++ S + I W + N K+ + + Q
Sbjct: 116 ILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAG 175
Query: 400 ---HDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
D + L +VS D+G +TCLA N++G SH S L+VL
Sbjct: 176 VNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVL 219
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 75/191 (39%), Gaps = 33/191 (17%)
Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
KF S +P P + W ++ ++ + K + + ++ +D+ + CI N
Sbjct: 35 KFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVEN 94
Query: 827 DFGQSITSCFLKLNVPKHYKKPKFLEELKA--VLSEGGAVNLECKVIGVPQPTLKWFK-- 882
++G SI + V + +P L A ++ G V CKV PQP ++W K
Sbjct: 95 EYG-SINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHI 153
Query: 883 --DGRELKAGDIHKI----------------------ISGEDGTCCLGIYTCEAHNCMGT 918
+G ++ ++ + +S ED G YTC A N +G
Sbjct: 154 EVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDA----GEYTCLAGNSIGL 209
Query: 919 TSSSAALLGFE 929
+ SA L E
Sbjct: 210 SHHSAWLTVLE 220
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 87/227 (38%), Gaps = 59/227 (25%)
Query: 447 APFFT------KELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD--------- 491
AP++T K+L A+ + TV +C G P P L W K+ K+ K
Sbjct: 12 APYWTSPEKMEKKLHAVPAAK-TVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRY 70
Query: 492 -IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSR--VIARGQQSFLDNDDVPFNSLMP-- 546
+++ + PS G YTC N G+ T + V+ R + +P N +
Sbjct: 71 ATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALG 130
Query: 547 ------------PGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEA 594
P P ++K +E +KIG + Q+L K V
Sbjct: 131 SNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQIL------------KTAGVNT 178
Query: 595 SDKYHIMADGLGGYSIEINYLEAV---DDGEWKCVATSSSGVKQFSA 638
+DK +E+ +L V D GE+ C+A +S G+ SA
Sbjct: 179 TDK-----------EMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSA 214
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 838 KLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELK 888
++ V ++ P+ +E+ + V +C G P PTL+W K+G+E K
Sbjct: 8 RMPVAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPNPTLRWLKNGKEFK 58
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 381 IHWYRNDRKLE-ENKI--YRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCEL 437
+ W +N ++ + +++I Y+ ++ + I + SV D G +TC+ EN G + + +L
Sbjct: 48 LRWLKNGKEFKPDHRIGGYKVRYAT--WSIIMDSVVPSDKGNYTCIVENEYGSINHTYQL 105
Query: 438 SVLVPKAYKAPFFTKELEA--ILTEQGTVSLECKVMGIPTPQLIWYK 482
V V ++ P L A + V CKV P P + W K
Sbjct: 106 DV-VERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLK 151
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 37/158 (23%)
Query: 605 LGGY-------SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVES 657
+GGY SI ++ + D G + C+ + G + Y ++ ++ +P
Sbjct: 63 IGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYG--SINHTYQLDVVERSPHRPILQAG 120
Query: 658 LKA--VMTDDGLVSFECKVVGFPTPTLQWFKDNE----ELKPGDV--YQLTGTSSL---- 705
L A + V F CKV P P +QW K E ++ P ++ Q+ T+ +
Sbjct: 121 LPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTD 180
Query: 706 ----------------GSYCCVAKNVMGKAESSTQLTI 727
G Y C+A N +G + S LT+
Sbjct: 181 KEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 218
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 79/201 (39%), Gaps = 45/201 (22%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKP----GDVYQLTGTSSL----------GSYCCVAK 713
V F+C G P PTL+W K+ +E KP G T S+ G+Y C+ +
Sbjct: 35 VKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVE 94
Query: 714 NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT-VNEEFKFTVQV 772
N G + QL + + H P GL + + + +F +V
Sbjct: 95 NEYGSINHTYQLDVVERSPH--------------RPILQAGLPANKTVALGSNVEFMCKV 140
Query: 773 SISPEPKVSWFRDDQ--------------QVVESDNVKILKETLGVCHLKIHALEVADQA 818
P+P + W + + Q++++ V + + V HL+ + E D
Sbjct: 141 YSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFE--DAG 198
Query: 819 EWKCIATNDFGQSITSCFLKL 839
E+ C+A N G S S +L +
Sbjct: 199 EYTCLAGNSIGLSHHSAWLTV 219
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 18/164 (10%)
Query: 291 DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 350
DH I G + R + + V D G Y+ NE G ++L V + P P
Sbjct: 61 DHRIGGYKVRY----ATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRP 116
Query: 351 AFIRRL-HDIAVKVGTRARLLVEIRSPTEIKIHWYR----NDRKLEENKIYRTQ------ 399
L + V +G+ + ++ S + I W + N K+ + + Q
Sbjct: 117 ILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAG 176
Query: 400 ---HDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
D + L +VS D+G +TCLA N++G SH S L+VL
Sbjct: 177 VNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVL 220
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 33/191 (17%)
Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
KF S +P+P + W ++ ++ + K + + ++ +D+ + CI N
Sbjct: 36 KFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVEN 95
Query: 827 DFGQSITSCFLKLNVPKHYKKPKFLEELKA--VLSEGGAVNLECKVIGVPQPTLKWFK-- 882
++G SI + V + +P L A ++ G V CKV PQP ++W K
Sbjct: 96 EYG-SINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHI 154
Query: 883 --DGRELKAGDIHKI----------------------ISGEDGTCCLGIYTCEAHNCMGT 918
+G ++ ++ + +S ED G YTC A N +G
Sbjct: 155 EVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDA----GEYTCLAGNSIGL 210
Query: 919 TSSSAALLGFE 929
+ SA L E
Sbjct: 211 SHHSAWLTVLE 221
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 87/227 (38%), Gaps = 59/227 (25%)
Query: 447 APFFT------KELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD--------- 491
AP++T K+L A+ + TV +C G P P L W K+ K+ K
Sbjct: 13 APYWTSPEKMEKKLHAVPAAK-TVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRY 71
Query: 492 -IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSR--VIARGQQSFLDNDDVPFNSLMP-- 546
+++ + PS G YTC N G+ T + V+ R + +P N +
Sbjct: 72 ATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALG 131
Query: 547 ------------PGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEA 594
P P ++K +E +KIG + Q+L K V
Sbjct: 132 SNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQIL------------KTAGVNT 179
Query: 595 SDKYHIMADGLGGYSIEINYLEAV---DDGEWKCVATSSSGVKQFSA 638
+DK +E+ +L V D GE+ C+A +S G+ SA
Sbjct: 180 TDK-----------EMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSA 215
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 838 KLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELK 888
++ V ++ P+ +E+ + V +C G PQPTL+W K+G+E K
Sbjct: 9 RMPVAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFK 59
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 65/150 (43%), Gaps = 16/150 (10%)
Query: 344 SQVPDAPAFI------RRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLE-ENKI- 395
+++P AP + ++LH AV + + + W +N ++ + +++I
Sbjct: 8 NRMPVAPYWTSPEKMEKKLH--AVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIG 65
Query: 396 -YRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKEL 454
Y+ ++ + I + SV D G +TC+ EN G + + +L V V ++ P L
Sbjct: 66 GYKVRYAT--WSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDV-VERSPHRPILQAGL 122
Query: 455 EA--ILTEQGTVSLECKVMGIPTPQLIWYK 482
A + V CKV P P + W K
Sbjct: 123 PANKTVALGSNVEFMCKVYSDPQPHIQWLK 152
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 37/158 (23%)
Query: 605 LGGY-------SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVES 657
+GGY SI ++ + D G + C+ + G + Y ++ ++ +P
Sbjct: 64 IGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYG--SINHTYQLDVVERSPHRPILQAG 121
Query: 658 LKA--VMTDDGLVSFECKVVGFPTPTLQWFKDNE----ELKPGDV--YQLTGTSSL---- 705
L A + V F CKV P P +QW K E ++ P ++ Q+ T+ +
Sbjct: 122 LPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTD 181
Query: 706 ----------------GSYCCVAKNVMGKAESSTQLTI 727
G Y C+A N +G + S LT+
Sbjct: 182 KEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 219
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 79/201 (39%), Gaps = 45/201 (22%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKP----GDVYQLTGTSSL----------GSYCCVAK 713
V F+C G P PTL+W K+ +E KP G T S+ G+Y C+ +
Sbjct: 34 VKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVE 93
Query: 714 NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT-VNEEFKFTVQV 772
N G + QL + + H P GL + + + +F +V
Sbjct: 94 NEYGSINHTYQLDVVERSPH--------------RPILQAGLPANKTVALGSNVEFMCKV 139
Query: 773 SISPEPKVSWFRDDQ--------------QVVESDNVKILKETLGVCHLKIHALEVADQA 818
P+P + W + + Q++++ V + + V HL+ + E D
Sbjct: 140 YSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFE--DAG 197
Query: 819 EWKCIATNDFGQSITSCFLKL 839
E+ C+A N G S S +L +
Sbjct: 198 EYTCLAGNSIGLSHHSAWLTV 218
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 18/164 (10%)
Query: 291 DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 350
DH I G + R + + V D G Y+ NE G ++L V + P P
Sbjct: 60 DHRIGGYKVRY----ATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRP 115
Query: 351 AFIRRL-HDIAVKVGTRARLLVEIRSPTEIKIHWYR----NDRKLEENKIYRTQ------ 399
L + V +G+ + ++ S + I W + N K+ + + Q
Sbjct: 116 ILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAG 175
Query: 400 ---HDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
D + L +VS D+G +TCLA N++G SH S L+VL
Sbjct: 176 VNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVL 219
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 33/191 (17%)
Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
KF S +P+P + W ++ ++ + K + + ++ +D+ + CI N
Sbjct: 35 KFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVEN 94
Query: 827 DFGQSITSCFLKLNVPKHYKKPKFLEELKA--VLSEGGAVNLECKVIGVPQPTLKWFK-- 882
++G SI + V + +P L A ++ G V CKV PQP ++W K
Sbjct: 95 EYG-SINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHI 153
Query: 883 --DGRELKAGDIHKI----------------------ISGEDGTCCLGIYTCEAHNCMGT 918
+G ++ ++ + +S ED G YTC A N +G
Sbjct: 154 EVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDA----GEYTCLAGNSIGL 209
Query: 919 TSSSAALLGFE 929
+ SA L E
Sbjct: 210 SHHSAWLTVLE 220
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 87/227 (38%), Gaps = 59/227 (25%)
Query: 447 APFFT------KELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD--------- 491
AP++T K+L A+ + TV +C G P P L W K+ K+ K
Sbjct: 12 APYWTSPEKMEKKLHAVPAAK-TVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRY 70
Query: 492 -IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSR--VIARGQQSFLDNDDVPFNSLMP-- 546
+++ + PS G YTC N G+ T + V+ R + +P N +
Sbjct: 71 ATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALG 130
Query: 547 ------------PGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEA 594
P P ++K +E +KIG + Q+L K V
Sbjct: 131 SNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQIL------------KTAGVNT 178
Query: 595 SDKYHIMADGLGGYSIEINYLEAV---DDGEWKCVATSSSGVKQFSA 638
+DK +E+ +L V D GE+ C+A +S G+ SA
Sbjct: 179 TDK-----------EMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSA 214
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 838 KLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELK 888
++ V ++ P+ +E+ + V +C G PQPTL+W K+G+E K
Sbjct: 8 RMPVAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFK 58
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 12/148 (8%)
Query: 344 SQVPDAPAFI------RRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLE-ENKIY 396
+++P AP + ++LH AV + + + W +N ++ + +++I
Sbjct: 7 NRMPVAPYWTSPEKMEKKLH--AVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIG 64
Query: 397 RTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEA 456
+ + I + SV D G +TC+ EN G + + +L V V ++ P L A
Sbjct: 65 GYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDV-VERSPHRPILQAGLPA 123
Query: 457 --ILTEQGTVSLECKVMGIPTPQLIWYK 482
+ V CKV P P + W K
Sbjct: 124 NKTVALGSNVEFMCKVYSDPQPHIQWLK 151
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 37/158 (23%)
Query: 605 LGGY-------SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVES 657
+GGY SI ++ + D G + C+ + G + Y ++ ++ +P
Sbjct: 63 IGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYG--SINHTYQLDVVERSPHRPILQAG 120
Query: 658 LKA--VMTDDGLVSFECKVVGFPTPTLQWFKDNE----ELKPGDV--YQLTGTSSL---- 705
L A + V F CKV P P +QW K E ++ P ++ Q+ T+ +
Sbjct: 121 LPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTD 180
Query: 706 ----------------GSYCCVAKNVMGKAESSTQLTI 727
G Y C+A N +G + S LT+
Sbjct: 181 KEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 218
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 37/200 (18%)
Query: 652 PRFVES-LKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELK------------PGDVYQ 698
PRF + + G+ SF C+ G P P + W K +++ G V +
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLR 66
Query: 699 ---LTGTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLL--LLTNNKAPKFIE 753
L Y CVA N +G+ ST+LT+ ED++ T + P+
Sbjct: 67 IQPLRTPRDEAIYECVASNNVGEISVSTRLTV-------LREDQIPRGFPTIDMGPQLKV 119
Query: 754 GLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDN---VKILK-ETLGVCHLKI 809
++ AT+ S +P+P+++WF+D V S+N +K L+ E++G L+I
Sbjct: 120 VERTRTATM------LCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGA--LQI 171
Query: 810 HALEVADQAEWKCIATNDFG 829
E +DQ +++C+ATN G
Sbjct: 172 EQSEESDQGKYECVATNSAG 191
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 768 FTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVA-DQAEWKCIATN 826
F Q + P PK+ W + ++V I + L+I L D+A ++C+A+N
Sbjct: 26 FICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASN 85
Query: 827 DFGQSITSCFLKL----NVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFK 882
+ G+ S L + +P+ + +LK V A L C G P P + WFK
Sbjct: 86 NVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATML-CAASGNPDPEITWFK 144
Query: 883 D----------GR--ELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALL 926
D GR +L++ I + + G Y C A N GT S+ A L
Sbjct: 145 DFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANL 200
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 90/213 (42%), Gaps = 34/213 (15%)
Query: 448 PFFTKE-LEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA----------GDIFALT 496
P FT+ ++ G S C+ G P P+++W K KK+ G L
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLR 66
Query: 497 ANP-KDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFN-SLMPPGPAPIFI 554
P + P Y C A N +G ++R+ + L D +P + GP +
Sbjct: 67 IQPLRTPRDEAIYECVASNNVGEISVSTRL------TVLREDQIPRGFPTIDMGPQ---L 117
Query: 555 KEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDK----YHIMADGLGGYSI 610
K VE + +A + C P P I W+ V+ S+ + ++ +G I
Sbjct: 118 KVVERTR-----TATMLCAASGNPDP-EITWFKDFLPVDTSNNNGRIKQLRSESIGALQI 171
Query: 611 EINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
E + E D G+++CVAT+S+G + + A ++V
Sbjct: 172 EQS--EESDQGKYECVATNSAGTRYSAPANLYV 202
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
Query: 861 GGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL------------GIY 908
GG + C+ G P+P + W K G+++ + ++I +DG+ + IY
Sbjct: 21 GGVASFICQATGDPRPKIVWNKKGKKV-SNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIY 79
Query: 909 TCEAHNCMGTTSSSAAL 925
C A N +G S S L
Sbjct: 80 ECVASNNVGEISVSTRL 96
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 12/62 (19%)
Query: 2 GIPTPQLIWYKDN------------KKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAA 49
G P P++ W+KD K++++ I AL + S G Y C A N G
Sbjct: 134 GNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTR 193
Query: 50 FS 51
+S
Sbjct: 194 YS 195
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 843 KHYKKPKFLEE-LKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDG 901
K + KP F + L + EG A +CKV G P P + WFKD +K +I E+G
Sbjct: 37 KPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG 96
Query: 902 TCCLGI----------YTCEAHNCMGTTSSSAALL 926
C L I YTC+A N +G + +A LL
Sbjct: 97 NCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELL 131
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 443 KAYKAPFFTKE-LEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD 501
K + P+FTK L+ + E +CKV G P P+++W+KD+ +K F + + +
Sbjct: 37 KPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG 96
Query: 502 PSSL----------GTYTCEAVNCMGAAFSTSRVI 526
SL YTC+AVN +G A T+ ++
Sbjct: 97 NCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELL 131
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHD--GNFYFI 407
P F + + D+ V G+ AR ++ + ++ W+++D ++E++ ++ +D GN
Sbjct: 42 PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101
Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+S V D ++TC A N++G + C+ EL V
Sbjct: 102 -ISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLK 808
P F + + + +F +V P+P+V WF+DD V ES + +I + G C L
Sbjct: 42 PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101
Query: 809 IHALEVADQAEWKCIATNDFGQSITSCFL 837
I + D A++ C A N G++ + L
Sbjct: 102 ISEVCGDDDAKYTCKAVNSLGEATCTAEL 130
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 15/99 (15%)
Query: 647 KNYRKPRFVESLKAVMTDDGLVS-FECKVVGFPTPTLQWFKDNEELKPGDVYQL----TG 701
K + KP F +++ + +G + F+CKV G+P P + WFKD+ +K +Q+ G
Sbjct: 37 KPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG 96
Query: 702 TSSL----------GSYCCVAKNVMGKAESSTQLTIEDI 730
SL Y C A N +G+A + +L +E +
Sbjct: 97 NCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETM 135
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 547 PGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLG 606
P P F K + +++ G++A +C+V P P + W+ + V+ S + I D G
Sbjct: 38 PHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPE-VMWFKDDNPVKESRHFQIDYDEEG 96
Query: 607 GYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPK 647
S+ I+ + DD ++ C A +S G +A + M K
Sbjct: 97 NCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGK 137
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
G P P+++W+KD+ +K F + + + SL YTC+AVN +G A
Sbjct: 67 GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATC 126
Query: 52 TSRVI 56
T+ ++
Sbjct: 127 TAELL 131
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 95/248 (38%), Gaps = 36/248 (14%)
Query: 250 HDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE 309
H I + VG +L++ + TE+ D N P S + +NRD +T+
Sbjct: 102 HGIELSVG--EKLVLNCTARTELNVGIDFNWEYPSSKHQHK---------KLVNRDLKTQ 150
Query: 310 -----------LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 358
L I V R D G Y+ AS SG T K V AF +
Sbjct: 151 SGSEMKKFLSTLTIDGVTRSDQGLYTCAAS--SGLMTKKNSTFVRVHEKPFVAFGSGMES 208
Query: 359 IA-VKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDS 417
+ VG R R+ + +I WY+N LE N + H + + VS D+
Sbjct: 209 LVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGH-----VLTIMEVSERDT 263
Query: 418 GRWTCLAENAVGRSHCS--CELSVLVPKAYKAPFFTKELEAILTEQGTV-SLECKVMGIP 474
G +T + N + + S L V VP +++ + GT +L C V IP
Sbjct: 264 GNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSY--QYGTTQTLTCTVYAIP 321
Query: 475 TPQLI-WY 481
P I WY
Sbjct: 322 PPHHIHWY 329
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 127/320 (39%), Gaps = 59/320 (18%)
Query: 357 HDIAVKVGTRARLLVEIRSPTEIKI--HWYRNDRKLEENKI----YRTQHDGN----FYF 406
H I + VG + L R+ + I +W K + K+ +TQ
Sbjct: 102 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 161
Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPF--FTKELEAIL--TEQG 462
+ + V+ D G +TC A + + S + V ++ PF F +E+++ T
Sbjct: 162 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV-----HEKPFVAFGSGMESLVEATVGE 216
Query: 463 TVSLECKVMGIPTPQLIWYKD------NKKIKAGDIFALTANPKDPSSLGTYTCEAVNCM 516
V + K +G P P++ WYK+ N IKAG + LT G YT N
Sbjct: 217 RVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHV--LTIMEVSERDTGNYTVILTN-- 272
Query: 517 GAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPA-PIFIKEVENVKAKIGTSAILECQVL 575
I++ +QS + V +PP I V++ + GT+ L C V
Sbjct: 273 --------PISKEKQSHV----VSLVVYVPPQIGEKSLISPVDSYQ--YGTTQTLTCTVY 318
Query: 576 VPPWPRSIYWY---NKEGVVEAS-----------DKYHIMADGLGGYSIEINYLE-AVDD 620
P P I+WY +E E S +++ + D GG IE+N + A+ +
Sbjct: 319 AIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIE 378
Query: 621 GEWKCVATSSSGVKQFSAAY 640
G+ K V+T SA Y
Sbjct: 379 GKNKTVSTLVIQAANVSALY 398
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKP--KFLEELKAVL--SEGG 862
L I + +DQ + C A++ S F+++ ++KP F +++++ + G
Sbjct: 162 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV-----HEKPFVAFGSGMESLVEATVGE 216
Query: 863 AVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGE 899
V + K +G P P +KW+K+G L++ H I +G
Sbjct: 217 RVRIPAKYLGYPPPEIKWYKNGIPLESN--HTIKAGH 251
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 18/121 (14%)
Query: 619 DDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKP--RFVESLKAVM--TDDGLVSFECKV 674
D G + C A+S K+ ++ +V V + KP F +++++ T V K
Sbjct: 171 DQGLYTCAASSGLMTKK-NSTFVRV-----HEKPFVAFGSGMESLVEATVGERVRIPAKY 224
Query: 675 VGFPTPTLQWFKD------NEELKPGDVYQLTGTSS--LGSYCCVAKNVMGKAESSTQLT 726
+G+P P ++W+K+ N +K G V + S G+Y + N + K + S ++
Sbjct: 225 LGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVS 284
Query: 727 I 727
+
Sbjct: 285 L 285
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 5/149 (3%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETLGVCH 806
AP F E L++ +V+ P+P V W+R ++++ +D +K ++E G H
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII-ADGLKYRIQEFKGGYH 62
Query: 807 -LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLS-EGGAV 864
L I ++ D ++ ATN G + L++ VP PK LE + AV + G V
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122
Query: 865 NLECKVIGVPQPTLKWFKDGRELKAGDIH 893
+++ G P P + W K G++L + H
Sbjct: 123 SIKIPFSGKPDPVITWQK-GQDLIDNNGH 150
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 80/196 (40%), Gaps = 16/196 (8%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
AP F +E+ N+ + ++A L C+V P P + WY + + A + + + GGY
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKP-IVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-LV 668
I DD V ++ G A + V +P P+ +E + AV G +V
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122
Query: 669 SFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL--------------GSYCCVAKN 714
S + G P P + W K + + YQ+ T S G Y AKN
Sbjct: 123 SIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKN 182
Query: 715 VMGKAESSTQLTIEDI 730
G + + +L + D+
Sbjct: 183 RFGIDQKTVELDVADV 198
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI-YRTQH-DGNFYF 406
AP F L ++ V+ + A L+ ++ + + WYR +++ + + YR Q G ++
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVS 465
+ ++SV+ D+ + A N G + L V VP P + + A+ +G VS
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 466 LECKVMGIPTPQLIWYK 482
++ G P P + W K
Sbjct: 124 IKIPFSGKPDPVITWQK 140
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 13/110 (11%)
Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKA-----------GDIHKI 895
P F EEL+ + + L CKV G P+P +KW++ G+E+ A G H++
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 896 ISGEDGTCCLGIYTCEAHNCMGTTSSSAAL-LGFEDKSQIEKAEEGKKAL 944
I +Y A N G+ S +A+L + K + K EG A+
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAV 114
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 72/195 (36%), Gaps = 31/195 (15%)
Query: 652 PRFVESLKAV-MTDDGLVSFECKVVGFPTPTLQWFKDNEELKP-----------GDVYQL 699
P F E L+ + + + CKV G P P ++W++ +E+ G +QL
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 700 TGTSSLGS----YCCVAKNVMGKAESSTQLTIE-DIRNHLSEEDKLLLLTNNKAPKFIEG 754
S Y A N G + L +E + HL PK +EG
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHL--------------PKTLEG 110
Query: 755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEV 814
+ + A E + S P+P ++W + + + + +++ + + +E
Sbjct: 111 MGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVER 170
Query: 815 ADQAEWKCIATNDFG 829
D + A N FG
Sbjct: 171 KDAGFYVVCAKNRFG 185
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 447 APFFTKELEAI-LTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA 489
AP F +EL + + Q +L CKV G P P + WY+ K+I A
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIA 47
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 79/205 (38%), Gaps = 20/205 (9%)
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF-GNRFR 300
AP F L ++ V+ + A L+ C+ + + QG I G ++R
Sbjct: 4 APHFKEELRNLNVRYQSNATLV----------CKVTGHPKPIVKWYRQGKEIIADGLKYR 53
Query: 301 AIN-RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDI 359
+ G +L I V DD Y V A+N+ G + L VE VP + L +
Sbjct: 54 IQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE--VPAKIHLPKTLEGM 111
Query: 360 AVKVGTRARLLVEIRSPTEIK----IHWYRNDRKLEENKIYRTQHDGNFY-FIDLSSVSL 414
R +V I+ P K I W + ++ N Y+ +F + + V
Sbjct: 112 GAVHALRGE-VVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVER 170
Query: 415 FDSGRWTCLAENAVGRSHCSCELSV 439
D+G + A+N G + EL V
Sbjct: 171 KDAGFYVVCAKNRFGIDQKTVELDV 195
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 843 KHYKKPKFLEE-LKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDG 901
K + KP F + L + EG A +CKV G P P + WFKD +K +I E+G
Sbjct: 37 KPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG 96
Query: 902 TCCLGI----------YTCEAHNCMGTTSSSAALL 926
C L I YTC+A N +G + +A LL
Sbjct: 97 NCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELL 131
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 443 KAYKAPFFTKE-LEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD 501
K + P+FTK L+ + E +CKV G P P+++W+KD+ +K F + + +
Sbjct: 37 KPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG 96
Query: 502 PSSL----------GTYTCEAVNCMGAAFSTSRVI 526
SL YTC+AVN +G A T+ ++
Sbjct: 97 NCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELL 131
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHD--GNFYFI 407
P F + + D+ V G+ AR ++ + ++ W+++D ++E++ ++ +D GN
Sbjct: 42 PYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101
Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+S V D ++TC A N++G + C+ EL V
Sbjct: 102 -ISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
+F +V P+P+V WF+DD V ES + +I + G C L I + D A++ C A N
Sbjct: 60 RFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN 119
Query: 827 DFGQSITSCFL 837
G++ + L
Sbjct: 120 SLGEATCTAEL 130
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 647 KNYRKPRFVESLKAVMTDDGLVS-FECKVVGFPTPTLQWFKDNEELKPGDVYQL----TG 701
K + KP F +++ + +G + F+CKV G+P P + WFKD+ +K +Q+ G
Sbjct: 37 KPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG 96
Query: 702 TSSL----------GSYCCVAKNVMGKAESSTQLTIE 728
SL Y C A N +G+A + +L +E
Sbjct: 97 NCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 547 PGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLG 606
P P F K + ++ G++A +C+V P P + W+ + V+ S + I D G
Sbjct: 38 PHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPE-VMWFKDDNPVKESRHFQIDYDEEG 96
Query: 607 GYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPK 647
S+ I+ + DD ++ C A +S G +A + M K
Sbjct: 97 NCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGK 137
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
G P P+++W+KD+ +K F + + + SL YTC+AVN +G A
Sbjct: 67 GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATC 126
Query: 52 TSRVI 56
T+ ++
Sbjct: 127 TAELL 131
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 6/188 (3%)
Query: 652 PRFVESLK-AVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGSYCC 710
PRF++ K + G+ SF C+ G P P + W K +++ + S G+
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 711 VAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLK-SCQATVNEEFKFT 769
+ + E+ + ++ ++ KL +L ++ P + Q V E +
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTA 126
Query: 770 VQV---SISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
+ S +P+P+++WF+D V S + +K+ L L+I + E DQ +++C+ATN
Sbjct: 127 TMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ-LRSGALQIESSEETDQGKYECVATN 185
Query: 827 DFGQSITS 834
G +S
Sbjct: 186 SAGVRYSS 193
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 82/201 (40%), Gaps = 23/201 (11%)
Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETL 802
T + P+FI+ K F Q + P+P+V+W + ++V I E+
Sbjct: 2 TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
Query: 803 GVCHLKIHALEVA-DQAEWKCIATNDFGQSITSCFLKL----NVPKHYKKPKFLEELKAV 857
G L+I L D+ ++C+A N G+ L + +P + +LK V
Sbjct: 62 GAV-LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Query: 858 LSEGGAVNLECKVIGVPQPTLKWFKD----------GR--ELKAGDIHKIISGEDGTCCL 905
A L C G P P + WFKD GR +L++G + I S E+
Sbjct: 121 ERTRTATML-CAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQ-IESSEETD--Q 176
Query: 906 GIYTCEAHNCMGTTSSSAALL 926
G Y C A N G SS A L
Sbjct: 177 GKYECVATNSAGVRYSSPANL 197
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 18/191 (9%)
Query: 348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHD---GNF 404
+ P FI+ D G A + + + ++ W + +K+ + + D G
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 405 YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL----VPKAYKAPFFTKELEAILTE 460
I D + C+A+N+VG +L+VL +P + +L+ ++
Sbjct: 65 LRIQPLRTPR-DENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLK-VVER 122
Query: 461 QGTVSLECKVMGIPTPQLIWYKD---------NKKIKAGDIFALTANPKDPSSLGTYTCE 511
T ++ C G P P++ W+KD N +IK AL + + G Y C
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECV 182
Query: 512 AVNCMGAAFST 522
A N G +S+
Sbjct: 183 ATNSAGVRYSS 193
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 86/212 (40%), Gaps = 35/212 (16%)
Query: 448 PFFTKE-LEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK------------AGDIFA 494
P F KE + I G S C+ G P P++ W K KK+ AG +
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 495 LTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPF---NSLMPPGPAP 551
+ + P Y C A N +G + + + L D +P N M P
Sbjct: 67 IQPL-RTPRDENVYECVAQNSVG------EITVHAKLTVLREDQLPSGFPNIDMGPQ--- 116
Query: 552 IFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIE 611
+K VE + +A + C P P I W+ V+ S + G +++
Sbjct: 117 --LKVVERTR-----TATMLCAASGNPDP-EITWFKDFLPVDPSASNGRIKQLRSG-ALQ 167
Query: 612 INYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
I E D G+++CVAT+S+GV+ S A ++V
Sbjct: 168 IESSEETDQGKYECVATNSAGVRYSSPANLYV 199
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 2 GIPTPQLIWYKD---------NKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFST 52
G P P++ W+KD N +IK AL + + G Y C A N G +S+
Sbjct: 134 GNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSS 193
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 6/188 (3%)
Query: 652 PRFVESLK-AVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGSYCC 710
PRF++ K + G+ SF C+ G P P + W K +++ + S G+
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 711 VAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLK-SCQATVNEEFKFT 769
+ + E+ + ++ ++ KL +L ++ P + Q V E +
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTA 126
Query: 770 VQV---SISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
+ S +P+P+++WF+D V S + +K+ L L+I + E DQ +++C+ATN
Sbjct: 127 TMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ-LRSGALQIESSEETDQGKYECVATN 185
Query: 827 DFGQSITS 834
G +S
Sbjct: 186 SAGVRYSS 193
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 82/201 (40%), Gaps = 23/201 (11%)
Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETL 802
T + P+FI+ K F Q + P+P+V+W + ++V I E+
Sbjct: 2 TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
Query: 803 GVCHLKIHALEVA-DQAEWKCIATNDFGQSITSCFLKL----NVPKHYKKPKFLEELKAV 857
G L+I L D+ ++C+A N G+ L + +P + +LK V
Sbjct: 62 GAV-LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Query: 858 LSEGGAVNLECKVIGVPQPTLKWFKD----------GR--ELKAGDIHKIISGEDGTCCL 905
A L C G P P + WFKD GR +L++G + I S E+
Sbjct: 121 ERTRTATML-CAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQ-IESSEETD--Q 176
Query: 906 GIYTCEAHNCMGTTSSSAALL 926
G Y C A N G SS A L
Sbjct: 177 GKYECVATNSAGVRYSSPANL 197
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 18/191 (9%)
Query: 348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHD---GNF 404
+ P FI+ D G A + + + ++ W + +K+ + + D G
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 405 YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL----VPKAYKAPFFTKELEAILTE 460
I D + C+A+N+VG +L+VL +P + +L+ ++
Sbjct: 65 LRIQPLRTPR-DENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLK-VVER 122
Query: 461 QGTVSLECKVMGIPTPQLIWYKD---------NKKIKAGDIFALTANPKDPSSLGTYTCE 511
T ++ C G P P++ W+KD N +IK AL + + G Y C
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECV 182
Query: 512 AVNCMGAAFST 522
A N G +S+
Sbjct: 183 ATNSAGVRYSS 193
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 87/212 (41%), Gaps = 35/212 (16%)
Query: 448 PFFTKE-LEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK------------AGDIFA 494
P F KE + I G S C+ G P P++ W K KK+ AG +
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 495 LTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPP---GPAP 551
+ + P Y C A N +G + + + L D +P S P GP
Sbjct: 67 IQPL-RTPRDENVYECVAQNSVG------EITVHAKLTVLREDQLP--SGFPNIDMGPQ- 116
Query: 552 IFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIE 611
+K VE + +A + C P P I W+ V+ S + G +++
Sbjct: 117 --LKVVERTR-----TATMLCAASGNPDP-EITWFKDFLPVDPSASNGRIKQLRSG-ALQ 167
Query: 612 INYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
I E D G+++CVAT+S+GV+ S A ++V
Sbjct: 168 IESSEETDQGKYECVATNSAGVRYSSPANLYV 199
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 2 GIPTPQLIWYKD---------NKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFST 52
G P P++ W+KD N +IK AL + + G Y C A N G +S+
Sbjct: 134 GNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSS 193
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 81/201 (40%), Gaps = 42/201 (20%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELK-----PGDVYQLTGTSSL 705
PR VE ++ G + CK G PTPT++W+K E ++ P L + SL
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 706 ---------------GSYCCVAKNVMGKAES-STQLTIEDIRNHLSEEDKLLLLTNNKAP 749
G Y CVA+N +G+A S L + +R+ + +++ + P
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGE-P 128
Query: 750 KFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKI 809
+E CQ PEP +SW +D + + D + T+ L I
Sbjct: 129 AVME----CQPPRGH-----------PEPTISWKKDGSPLDDKDE----RITIRGGKLMI 169
Query: 810 HALEVADQAEWKCIATNDFGQ 830
+D ++ C+ TN G+
Sbjct: 170 TYTRKSDAGKYVCVGTNMVGE 190
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 87/219 (39%), Gaps = 47/219 (21%)
Query: 457 ILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK--------------AGDIFAL--TANPK 500
I+++ +L CK G PTP + WYK ++++ +G +F L K
Sbjct: 20 IVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRK 79
Query: 501 DPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENV 560
G Y C A N +G A S A + + L +D F + +V
Sbjct: 80 SRPDEGVYVCVARNYLGEAVSHD---ASLEVAILRDD---------------FRQNPSDV 121
Query: 561 KAKIGTSAILECQVLVPP--WPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAV 618
+G A++ECQ PP P + K+G I + G + I Y
Sbjct: 122 MVAVGEPAVMECQ---PPRGHPEPTISWKKDGSPLDDKDERIT---IRGGKLMITYTRKS 175
Query: 619 DDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVES 657
D G++ CV T+ G ++ A + VL +P FV++
Sbjct: 176 DAGKYVCVGTNMVGERESEVAELTVL-----ERPSFVKA 209
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 81/197 (41%), Gaps = 26/197 (13%)
Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSI 610
P ++ ++ G A L C+ P P +I WY VE +DK + + S
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTP-TIEWYKGGERVE-TDKDDPRSHRMLLPSG 67
Query: 611 EINYLEAV-------DDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMT 663
+ +L V D+G + CVA + G A + V + ++ F ++ VM
Sbjct: 68 SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRD----DFRQNPSDVMV 123
Query: 664 DDGLVS-FECKVV-GFPTPTLQWFKDNEELKPGD----------VYQLTGTSSLGSYCCV 711
G + EC+ G P PT+ W KD L D + T S G Y CV
Sbjct: 124 AVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCV 183
Query: 712 AKNVMGKAESS-TQLTI 727
N++G+ ES +LT+
Sbjct: 184 GTNMVGERESEVAELTV 200
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 86/206 (41%), Gaps = 23/206 (11%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESD-----NVKILKETLG 803
P+ +E + E + P P + W++ ++V E+D + ++L +
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERV-ETDKDDPRSHRMLLPSGS 68
Query: 804 VCHLKI-HALEV-ADQAEWKCIATNDFGQSIT-SCFLKLNVPKHYKKPKFLEELKAVLSE 860
+ L+I H + D+ + C+A N G++++ L++ + + + + + AV
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAV--- 125
Query: 861 GGAVNLECKVI-GVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL--------GIYTCE 911
G +EC+ G P+PT+ W KDG L D I G G + G Y C
Sbjct: 126 GEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRG--GKLMITYTRKSDAGKYVCV 183
Query: 912 AHNCMGTTSSSAALLGFEDKSQIEKA 937
N +G S A L ++ KA
Sbjct: 184 GTNMVGERESEVAELTVLERPSFVKA 209
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETLGVCH 806
AP F E L++ +V+ P+P V W+R ++++ +D +K ++E G H
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII-ADGLKYRIQEFKGGYH 62
Query: 807 -LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLS-EGGAV 864
L I ++ D ++ ATN G + L++ VP PK LE + AV + G V
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122
Query: 865 NLECKVIGVPQPTLKWFKDGREL 887
+++ G P P + W K G++L
Sbjct: 123 SIKIPFSGKPDPVITWQK-GQDL 144
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 79/195 (40%), Gaps = 16/195 (8%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
AP F +E+ N+ + ++A L C+V P P + WY + + A + + + GGY
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKP-IVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-LV 668
I DD V ++ G A + V +P P+ +E + AV G +V
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122
Query: 669 SFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL--------------GSYCCVAKN 714
S + G P P + W K + + YQ+ T S G Y AKN
Sbjct: 123 SIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKN 182
Query: 715 VMGKAESSTQLTIED 729
G + + +L + D
Sbjct: 183 RFGIDQKTVELDVAD 197
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI-YRTQH-DGNFYF 406
AP F L ++ V+ + A L+ ++ + + WYR +++ + + YR Q G ++
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVS 465
+ ++SV+ D+ + A N G + L V VP P + + A+ +G VS
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 466 LECKVMGIPTPQLIWYK 482
++ G P P + W K
Sbjct: 124 IKIPFSGKPDPVITWQK 140
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 21/114 (18%)
Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKA-----------GDIHKI 895
P F EEL+ + + L CKV G P+P +KW++ G+E+ A G H++
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 896 I----SGEDGTCCLGIYTCEAHNCMGTTSSSAAL-LGFEDKSQIEKAEEGKKAL 944
I + +D T +Y A N G+ S +A+L + K + K EG A+
Sbjct: 65 IIASVTDDDAT----VYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAV 114
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 72/195 (36%), Gaps = 31/195 (15%)
Query: 652 PRFVESLKAV-MTDDGLVSFECKVVGFPTPTLQWFKDNEELKP-----------GDVYQL 699
P F E L+ + + + CKV G P P ++W++ +E+ G +QL
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 700 TGTSSLGS----YCCVAKNVMGKAESSTQLTIE-DIRNHLSEEDKLLLLTNNKAPKFIEG 754
S Y A N G + L +E + HL PK +EG
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHL--------------PKTLEG 110
Query: 755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEV 814
+ + A E + S P+P ++W + + + + +++ + + +E
Sbjct: 111 MGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVER 170
Query: 815 ADQAEWKCIATNDFG 829
D + A N FG
Sbjct: 171 KDAGFYVVCAKNRFG 185
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 447 APFFTKELEAI-LTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA 489
AP F +EL + + Q +L CKV G P P + WY+ K+I A
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIA 47
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 8/141 (5%)
Query: 304 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKV 363
+ G +L I V DD Y V A+N+ G + L VE VP + L +
Sbjct: 58 KGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE--VPAKIHLPKTLEGMGAVH 115
Query: 364 GTRARLLVEIRSPTEIK----IHWYRNDRKLEENKIYRTQHDGNFY-FIDLSSVSLFDSG 418
R +V I+ P K I W + ++ N Y+ +F + + V D+G
Sbjct: 116 ALRGE-VVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAG 174
Query: 419 RWTCLAENAVGRSHCSCELSV 439
+ A+N G + EL V
Sbjct: 175 FYVVCAKNRFGIDQKTVELDV 195
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETLGVCH 806
AP F E L++ +V+ P+P V W+R ++++ +D +K ++E G H
Sbjct: 2 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII-ADGLKYRIQEFKGGYH 60
Query: 807 -LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLS-EGGAV 864
L I ++ D ++ ATN G + L++ VP PK LE + AV + G V
Sbjct: 61 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 120
Query: 865 NLECKVIGVPQPTLKWFKDGREL 887
+++ G P P + W K G++L
Sbjct: 121 SIKIPFSGKPDPVITWQK-GQDL 142
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 79/195 (40%), Gaps = 16/195 (8%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
AP F +E+ N+ + ++A L C+V P P + WY + + A + + + GGY
Sbjct: 2 APHFKEELRNLNVRYQSNATLVCKVTGHPKP-IVKWYRQGKEIIADGLKYRIQEFKGGYH 60
Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-LV 668
I DD V ++ G A + V +P P+ +E + AV G +V
Sbjct: 61 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 120
Query: 669 SFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL--------------GSYCCVAKN 714
S + G P P + W K + + YQ+ T S G Y AKN
Sbjct: 121 SIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKN 180
Query: 715 VMGKAESSTQLTIED 729
G + + +L + D
Sbjct: 181 RFGIDQKTVELDVAD 195
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI-YRTQH-DGNFYF 406
AP F L ++ V+ + A L+ ++ + + WYR +++ + + YR Q G ++
Sbjct: 2 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 61
Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVS 465
+ ++SV+ D+ + A N G + L V VP P + + A+ +G VS
Sbjct: 62 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 121
Query: 466 LECKVMGIPTPQLIWYK 482
++ G P P + W K
Sbjct: 122 IKIPFSGKPDPVITWQK 138
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 21/114 (18%)
Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKA-----------GDIHKI 895
P F EEL+ + + L CKV G P+P +KW++ G+E+ A G H++
Sbjct: 3 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 62
Query: 896 I----SGEDGTCCLGIYTCEAHNCMGTTSSSAAL-LGFEDKSQIEKAEEGKKAL 944
I + +D T +Y A N G+ S +A+L + K + K EG A+
Sbjct: 63 IIASVTDDDAT----VYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAV 112
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 72/195 (36%), Gaps = 31/195 (15%)
Query: 652 PRFVESLKAV-MTDDGLVSFECKVVGFPTPTLQWFKDNEELKP-----------GDVYQL 699
P F E L+ + + + CKV G P P ++W++ +E+ G +QL
Sbjct: 3 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 62
Query: 700 TGTSSLGS----YCCVAKNVMGKAESSTQLTIE-DIRNHLSEEDKLLLLTNNKAPKFIEG 754
S Y A N G + L +E + HL PK +EG
Sbjct: 63 IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHL--------------PKTLEG 108
Query: 755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEV 814
+ + A E + S P+P ++W + + + + +++ + + +E
Sbjct: 109 MGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVER 168
Query: 815 ADQAEWKCIATNDFG 829
D + A N FG
Sbjct: 169 KDAGFYVVCAKNRFG 183
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 447 APFFTKELEAI-LTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA 489
AP F +EL + + Q +L CKV G P P + WY+ K+I A
Sbjct: 2 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIA 45
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 8/141 (5%)
Query: 304 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKV 363
+ G +L I V DD Y V A+N+ G + L VE VP + L +
Sbjct: 56 KGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE--VPAKIHLPKTLEGMGAVH 113
Query: 364 GTRARLLVEIRSPTEIK----IHWYRNDRKLEENKIYRTQHDGNFY-FIDLSSVSLFDSG 418
R +V I+ P K I W + ++ N Y+ +F + + V D+G
Sbjct: 114 ALRGE-VVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAG 172
Query: 419 RWTCLAENAVGRSHCSCELSV 439
+ A+N G + EL V
Sbjct: 173 FYVVCAKNRFGIDQKTVELDV 193
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 93/434 (21%), Positives = 160/434 (36%), Gaps = 86/434 (19%)
Query: 446 KAPFFTKELEAIL--TEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD-- 501
K P F KE + + +ECK G P P++IW + + GD+ L D
Sbjct: 8 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSD-GTAVGDVPGLRQISSDGK 66
Query: 502 ----PSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEV 557
P Y E + A +AR Q + + DV +++ A + +V
Sbjct: 67 LVFPPFRAEDYRQEVHAQVYAC------LARNQFGSIISRDVHVRAVV----AQYYEADV 116
Query: 558 ENVKAKIGTSAILECQV--LVPPWPRSIYWYNKE-----GVVEASDKYHIMADGLGGYSI 610
G SA+++C + V + + W+ E E KY ++ G
Sbjct: 117 NKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG------ 170
Query: 611 EINYLEAVDDGEWKCVATSS----SGVKQFSAAYVHVLMPKNY-----RKPRFVESLKAV 661
E++ E + +K + +G + SA +++ + R P V+ +
Sbjct: 171 ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLEL 230
Query: 662 MTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD-------VYQLTGTSSL--------G 706
M +S C GFP P+ +W+K E V Q++GT + G
Sbjct: 231 MVAH-TISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSG 289
Query: 707 SYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEF 766
Y CV N +G T LT+ + ++ D + P
Sbjct: 290 KYLCVVNNSVGGESVETVLTVTAPLS--AKIDPPTQTVDFGRPAV--------------- 332
Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
FT Q + +P VSW +D + + S++V L+I +++ D+ ++C N
Sbjct: 333 -FTCQYTGNPIKTVSWMKDGKAIGHSESV-----------LRIESVKKEDKGMYQCFVRN 380
Query: 827 DFGQSITSCFLKLN 840
D + S LKL
Sbjct: 381 DRESAEASAELKLG 394
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 87/414 (21%), Positives = 149/414 (35%), Gaps = 69/414 (16%)
Query: 550 APIFIKEVEN-VKAKIGTSAILECQVLVPPWPRSIYWYNKEG--VVEASDKYHIMADG-- 604
P+F+KE N + T A +EC+ P P I W +G V + I +DG
Sbjct: 9 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPE-IIWIRSDGTAVGDVPGLRQISSDGKL 67
Query: 605 -LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYR----KPRFVESLK 659
+ E +Y + V + C+A + G +V ++ + Y K +
Sbjct: 68 VFPPFRAE-DYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNS 126
Query: 660 AVMTDDGLVSFECKVVGFP---TPTLQWFKDNEE--------------LKPGDVY--QLT 700
AV+ +C + F + W D EE L G+++ ++
Sbjct: 127 AVI--------KCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVG 178
Query: 701 GTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQA 760
SY C K+ + T+L+ R ++E + + + P ++ K +
Sbjct: 179 PEDGYKSYQCRTKH---RLTGETRLSATKGRLVITEP---ISSSAPRTPALVQ--KPLEL 230
Query: 761 TVNEEFKFTVQVSISPEPKVSWFR------DDQQVVESDNVKILKETLGVCHLKIHALEV 814
V P P W++ Q VV +D VK + TL I V
Sbjct: 231 MVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTL-----IIKDAVV 285
Query: 815 ADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVP 874
D ++ C+ N G L + P K ++ + G C+ G P
Sbjct: 286 EDSGKYLCVVNNSVGGESVETVLTVTAPLSAK----IDPPTQTVDFGRPAVFTCQYTGNP 341
Query: 875 QPTLKWFKDGRELKAGD-IHKI--ISGEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
T+ W KDG+ + + + +I + ED G+Y C N + +SA L
Sbjct: 342 IKTVSWMKDGKAIGHSESVLRIESVKKEDK----GMYQCFVRNDRESAEASAEL 391
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 79/214 (36%), Gaps = 35/214 (16%)
Query: 297 NRFRAINRDGR------TELNIRRVRRDDG-----GRYSVTASNESGYSTAKFEL----S 341
N F DG+ EL+IR V +DG R + E+ S K L
Sbjct: 153 NYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEP 212
Query: 342 VESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYR----NDRKLEENKIYR 397
+ S P PA +++ + + V LL + WY+ RK R
Sbjct: 213 ISSSAPRTPALVQK--PLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDR 270
Query: 398 TQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELE-- 455
+ I + V DSG++ C+ N+VG L+V P + K T+ ++
Sbjct: 271 VKQVSGTLIIKDAVVE--DSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFG 328
Query: 456 --AILTEQGTVSLECKVMGIPTPQLIWYKDNKKI 487
A+ T C+ G P + W KD K I
Sbjct: 329 RPAVFT--------CQYTGNPIKTVSWMKDGKAI 354
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 19/116 (16%)
Query: 381 IHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSG------RWTCLAENAV-GRSHC 433
+ W+ ++ EEN ++DG + + + + + G + C ++ + G +
Sbjct: 144 VSWHTDE---EENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRL 200
Query: 434 SCELSVLV---PKAYKAP----FFTKELEAILTEQGTVSLECKVMGIPTPQLIWYK 482
S LV P + AP K LE ++ T+SL C G P P WYK
Sbjct: 201 SATKGRLVITEPISSSAPRTPALVQKPLELMVAH--TISLLCPAQGFPAPSFRWYK 254
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 93/434 (21%), Positives = 160/434 (36%), Gaps = 86/434 (19%)
Query: 446 KAPFFTKELEAIL--TEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD-- 501
K P F KE + + +ECK G P P++IW + + GD+ L D
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSD-GTAVGDVPGLRQISSDGK 60
Query: 502 ----PSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEV 557
P Y E + A +AR Q + + DV +++ A + +V
Sbjct: 61 LVFPPFRAEDYRQEVHAQVYAC------LARNQFGSIISRDVHVRAVV----AQYYEADV 110
Query: 558 ENVKAKIGTSAILECQV--LVPPWPRSIYWYNKE-----GVVEASDKYHIMADGLGGYSI 610
G SA+++C + V + + W+ E E KY ++ G
Sbjct: 111 NKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG------ 164
Query: 611 EINYLEAVDDGEWKCVATSS----SGVKQFSAAYVHVLMPKNY-----RKPRFVESLKAV 661
E++ E + +K + +G + SA +++ + R P V+ +
Sbjct: 165 ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLEL 224
Query: 662 MTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD-------VYQLTGTSSL--------G 706
M +S C GFP P+ +W+K E V Q++GT + G
Sbjct: 225 MVAH-TISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSG 283
Query: 707 SYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEF 766
Y CV N +G T LT+ + ++ D + P
Sbjct: 284 KYLCVVNNSVGGESVETVLTVTAPLS--AKIDPPTQTVDFGRPAV--------------- 326
Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
FT Q + +P VSW +D + + S++V L+I +++ D+ ++C N
Sbjct: 327 -FTCQYTGNPIKTVSWMKDGKAIGHSESV-----------LRIESVKKEDKGMYQCFVRN 374
Query: 827 DFGQSITSCFLKLN 840
D + S LKL
Sbjct: 375 DRESAEASAELKLG 388
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 87/414 (21%), Positives = 149/414 (35%), Gaps = 69/414 (16%)
Query: 550 APIFIKEVEN-VKAKIGTSAILECQVLVPPWPRSIYWYNKEG--VVEASDKYHIMADG-- 604
P+F+KE N + T A +EC+ P P I W +G V + I +DG
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPE-IIWIRSDGTAVGDVPGLRQISSDGKL 61
Query: 605 -LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYR----KPRFVESLK 659
+ E +Y + V + C+A + G +V ++ + Y K +
Sbjct: 62 VFPPFRAE-DYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNS 120
Query: 660 AVMTDDGLVSFECKVVGFP---TPTLQWFKDNEE--------------LKPGDVY--QLT 700
AV+ +C + F + W D EE L G+++ ++
Sbjct: 121 AVI--------KCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVG 172
Query: 701 GTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQA 760
SY C K+ + T+L+ R ++E + + + P ++ K +
Sbjct: 173 PEDGYKSYQCRTKH---RLTGETRLSATKGRLVITEP---ISSSAPRTPALVQ--KPLEL 224
Query: 761 TVNEEFKFTVQVSISPEPKVSWFR------DDQQVVESDNVKILKETLGVCHLKIHALEV 814
V P P W++ Q VV +D VK + TL I V
Sbjct: 225 MVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTL-----IIKDAVV 279
Query: 815 ADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVP 874
D ++ C+ N G L + P K ++ + G C+ G P
Sbjct: 280 EDSGKYLCVVNNSVGGESVETVLTVTAPLSAK----IDPPTQTVDFGRPAVFTCQYTGNP 335
Query: 875 QPTLKWFKDGRELKAGD-IHKI--ISGEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
T+ W KDG+ + + + +I + ED G+Y C N + +SA L
Sbjct: 336 IKTVSWMKDGKAIGHSESVLRIESVKKEDK----GMYQCFVRNDRESAEASAEL 385
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 79/214 (36%), Gaps = 35/214 (16%)
Query: 297 NRFRAINRDGR------TELNIRRVRRDDG-----GRYSVTASNESGYSTAKFEL----S 341
N F DG+ EL+IR V +DG R + E+ S K L
Sbjct: 147 NYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEP 206
Query: 342 VESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYR----NDRKLEENKIYR 397
+ S P PA +++ + + V LL + WY+ RK R
Sbjct: 207 ISSSAPRTPALVQK--PLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDR 264
Query: 398 TQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELE-- 455
+ I + V DSG++ C+ N+VG L+V P + K T+ ++
Sbjct: 265 VKQVSGTLIIKDAVVE--DSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFG 322
Query: 456 --AILTEQGTVSLECKVMGIPTPQLIWYKDNKKI 487
A+ T C+ G P + W KD K I
Sbjct: 323 RPAVFT--------CQYTGNPIKTVSWMKDGKAI 348
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 19/116 (16%)
Query: 381 IHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSG------RWTCLAENAV-GRSHC 433
+ W+ ++ EEN ++DG + + + + + G + C ++ + G +
Sbjct: 138 VSWHTDE---EENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRL 194
Query: 434 SCELSVLV---PKAYKAP----FFTKELEAILTEQGTVSLECKVMGIPTPQLIWYK 482
S LV P + AP K LE ++ T+SL C G P P WYK
Sbjct: 195 SATKGRLVITEPISSSAPRTPALVQKPLELMVAH--TISLLCPAQGFPAPSFRWYK 248
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 23/109 (21%)
Query: 829 GQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELK 888
G + T+ F ++ + KHYK + EG V C+V G P+P + WFKDG+++
Sbjct: 2 GSNATAPFFEMKL-KHYK-----------IFEGMPVTFTCRVAGNPKPKIYWFKDGKQIS 49
Query: 889 AGDIHKIISGE-DGTCCL----------GIYTCEAHNCMGTTSSSAALL 926
H I + DGTC L G YT A N G S + L+
Sbjct: 50 PKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRVSCTGRLM 98
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVV-ESDNVKILKETL 802
+N AP F LK + FT +V+ +P+PK+ WF+D +Q+ +SD+ I ++
Sbjct: 3 SNATAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLD 62
Query: 803 GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
G C L A + D + +A N G+ SC +L V
Sbjct: 63 GTCSLHTTASTLDDDGNYTIMAANPQGR--VSCTGRLMV 99
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 16/99 (16%)
Query: 648 NYRKPRFVESLKAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKP-GDVY----QLTG 701
N P F LK +G+ V+F C+V G P P + WFKD +++ P D Y L G
Sbjct: 4 NATAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG 63
Query: 702 TSSL----------GSYCCVAKNVMGKAESSTQLTIEDI 730
T SL G+Y +A N G+ + +L ++ +
Sbjct: 64 TCSLHTTASTLDDDGNYTIMAANPQGRVSCTGRLMVQAV 102
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 447 APFFTKELEAILTEQGT-VSLECKVMGIPTPQLIWYKDNKKIKA-GDIFALTANPKDPSS 504
APFF +L+ +G V+ C+V G P P++ W+KD K+I D + + + S
Sbjct: 7 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 66
Query: 505 L----------GTYTCEAVNCMGAAFSTSRVIAR 528
L G YT A N G T R++ +
Sbjct: 67 LHTTASTLDDDGNYTIMAANPQGRVSCTGRLMVQ 100
Score = 36.2 bits (82), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG--VVEASDKYHIMADGLGG 607
AP F ++++ K G C+V P P+ IYW+ K+G + SD Y I D G
Sbjct: 7 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPK-IYWF-KDGKQISPKSDHYTIQRDLDGT 64
Query: 608 YSIEINYLEAVDDGEWKCVATSSSG 632
S+ DDG + +A + G
Sbjct: 65 CSLHTTASTLDDDGNYTIMAANPQG 89
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLE-ENKIYRTQHD-GNFYF 406
AP F +L + G + + KI+W+++ +++ ++ Y Q D
Sbjct: 7 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 66
Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+ ++ +L D G +T +A N GR C+ L V
Sbjct: 67 LHTTASTLDDDGNYTIMAANPQGRVSCTGRLMV 99
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 94/433 (21%), Positives = 172/433 (39%), Gaps = 85/433 (19%)
Query: 446 KAPFFTKEL--EAILTEQGTVSLECKVMGIPTPQLIWYKDNK------------KIKAGD 491
+ P TK+ + I+ + + +EC+ G P P W ++++ + ++G
Sbjct: 15 QPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGT 74
Query: 492 I---FALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPG 548
+ F P++ G Y C A N G A S +R+ + +S
Sbjct: 75 LVIDFRSGGRPEE--YEGEYQCFARNKFGTALS-NRIRLQVSKS---------------- 115
Query: 549 PAPIFIKE-VENVKAKIGTSAILECQVLVPPWPRS--IYWYNKEGVVEASDKYHIMADGL 605
P++ KE ++ V + G L+C PP S I+W + DK ++ G
Sbjct: 116 --PLWPKENLDPVVVQEGAPLTLQCNP--PPGLPSPVIFWMSSSMEPITQDKR--VSQGH 169
Query: 606 GGYSIEINYLEAVDDGEWKCVATS--SSGVKQFSAAYVHVLMPKNY--RKPRFVE---SL 658
G N + ++ C A + ++Q + + VL + R P F+ +
Sbjct: 170 NGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTA 229
Query: 659 KAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKPGD---------VYQLTGTSS--LG 706
+ M G+ + EC G PTP + W+K +L P D ++T S G
Sbjct: 230 SSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDL-PSDKAKFENFNKALRITNVSEEDSG 288
Query: 707 SYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEF 766
Y C+A N MG + + ++ L E L+L +G C+A N
Sbjct: 289 EYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGE------DGRLVCRANGNP-- 340
Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
K TVQ ++ EP S + + V D + I ++T +++ +A ++C +N
Sbjct: 341 KPTVQWMVNGEPLQSAPPNPNREVAGDTI-IFRDT-----------QISSRAVYQCNTSN 388
Query: 827 DFGQSITSCFLKL 839
+ G + + F+ +
Sbjct: 389 EHGYLLANAFVSV 401
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 88/391 (22%), Positives = 156/391 (39%), Gaps = 76/391 (19%)
Query: 381 IHWYRNDRKL---EENKIYRTQHDGNFYFIDLSSVSLFDS--GRWTCLAENAVGRSHCSC 435
HW RN R ++ ++ + G ID S + G + C A N G + S
Sbjct: 49 FHWTRNSRFFNIAKDPRVSMRRRSGTL-VIDFRSGGRPEEYEGEYQCFARNKFG-TALSN 106
Query: 436 ELSVLVPKAYKAPFFTKE-LEAILTEQGT-VSLECKVM-GIPTPQLIWYK-------DNK 485
+ + V K+P + KE L+ ++ ++G ++L+C G+P+P + W +K
Sbjct: 107 RIRLQV---SKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDK 163
Query: 486 KIKAG---DIFALTANPKDPSS--------LGTYTCEAVNCMGAAFSTSRVIARGQQSFL 534
++ G D++ +D + T+T + N T+R +A SF+
Sbjct: 164 RVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFM 223
Query: 535 DNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEA 594
P G A + G +LEC P P I WY K G +
Sbjct: 224 ----------YPQGTA-------SSQMVLRGMDLLLECIASGVPTP-DIAWYKKGGDL-P 264
Query: 595 SDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRF 654
SDK ++ I + D GE+ C+A++ G + H + + P +
Sbjct: 265 SDKAKFEN---FNKALRITNVSEEDSGEYFCLASNKMG------SIRHTISVRVKAAPYW 315
Query: 655 VESLKAVMT---DDGLVSFECKVVGFPTPTLQWFKDNEELK----------PGD--VYQL 699
++ K ++ +DG + C+ G P PT+QW + E L+ GD +++
Sbjct: 316 LDEPKNLILAPGEDGRLV--CRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRD 373
Query: 700 TGTSSLGSYCCVAKNVMGKAESSTQLTIEDI 730
T SS Y C N G ++ +++ D+
Sbjct: 374 TQISSRAVYQCNTSNEHGYLLANAFVSVLDV 404
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/337 (21%), Positives = 129/337 (38%), Gaps = 61/337 (18%)
Query: 620 DGEWKCVATSSSGVKQFSAAYVHV----LMPKNYRKPRFVESLKAVMTDDGL-VSFECKV 674
+GE++C A + G + + V L PK E+L V+ +G ++ +C
Sbjct: 89 EGEYQCFARNKFGTALSNRIRLQVSKSPLWPK--------ENLDPVVVQEGAPLTLQCNP 140
Query: 675 V-GFPTPTLQWFKDNEEL----------KPGDVY--QLTGTSSLGSYCCVAK-NVMGKAE 720
G P+P + W + E GD+Y + Y C A+ + +
Sbjct: 141 PPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQ 200
Query: 721 SSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFI--EGLKSCQATV-NEEFKFTVQVSISPE 777
T++ + E + P F+ +G S Q + + S P
Sbjct: 201 QKNPFTLKVLTTRGVAE---------RTPSFMYPQGTASSQMVLRGMDLLLECIASGVPT 251
Query: 778 PKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFL 837
P ++W++ + SD K E L+I + D E+ C+A+N G + +
Sbjct: 252 PDIAWYKKGGDL-PSDKAKF--ENFNKA-LRITNVSEEDSGEYFCLASNKMGSIRHTISV 307
Query: 838 KLNVPKHYKKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELK-------- 888
++ P +L+E K +L+ G L C+ G P+PT++W +G L+
Sbjct: 308 RVKA-----APYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNR 362
Query: 889 --AGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSA 923
AGD II + +Y C N G ++A
Sbjct: 363 EVAGDT--IIFRDTQISSRAVYQCNTSNEHGYLLANA 397
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 122/325 (37%), Gaps = 64/325 (19%)
Query: 263 LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRR----VRRD 318
+V+ R I+C+ N F H +RF I +D R + R +
Sbjct: 28 IVDPRDNILIECEAKGNPAPSF-------HWTRNSRFFNIAKDPRVSMRRRSGTLVIDFR 80
Query: 319 DGGR-------YSVTASNESGYSTAKFELSVESQVPDAPAFIR-RLHDIAVKVGTRARLL 370
GGR Y A N+ G + + + QV +P + + L + V+ G A L
Sbjct: 81 SGGRPEEYEGEYQCFARNKFGTALSN---RIRLQVSKSPLWPKENLDPVVVQEG--APLT 135
Query: 371 VEIRSPTEIK---IHWYRNDRK-LEENKIYRTQHDGNFYFIDLSSVSLFD-SGRWTCLAE 425
++ P + I W + + + ++K H+G+ YF S+V L D ++C A
Sbjct: 136 LQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYF---SNVMLQDMQTDYSCNAR 192
Query: 426 NAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVS-----------LECKVMGIP 474
+H + + K + + + QGT S LEC G+P
Sbjct: 193 --FHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVP 250
Query: 475 TPQLIWYKDNKKIKAGDIF-----------ALTANPKDPSSLGTYTCEAVNCMGAAFSTS 523
TP + WYK K GD+ AL G Y C A N MG+ T
Sbjct: 251 TPDIAWYK-----KGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTI 305
Query: 524 RVIARGQQSFLDNDDVPFNSLMPPG 548
V + +LD P N ++ PG
Sbjct: 306 SVRVKAAPYWLDE---PKNLILAPG 327
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 91/226 (40%), Gaps = 32/226 (14%)
Query: 23 FALTANPKDPSSLGTYTCEAVNCMGAAF------STSRVIARGQQSFLD-------NDDV 69
F T K+P +L T V +F ++S+++ RG L+ D+
Sbjct: 195 FTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDI 254
Query: 70 PFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
+ + GD P +F N+ L I V +D G Y ASN+ G + + +SV
Sbjct: 255 AWYKKGGDLPSDKAKFENFNK----ALRITNVSEEDSGEYFCLASNKMG--SIRHTISV- 307
Query: 130 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFG 189
+V AP ++ ++ + G RL+ + Q+ +N S + + G
Sbjct: 308 -RVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAG 366
Query: 190 NRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
+ I RD T+++ R V Y SNE GY A +SV
Sbjct: 367 DTI--IFRD--TQISSRAV-------YQCNTSNEHGYLLANAFVSV 401
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 106/290 (36%), Gaps = 63/290 (21%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPG-----DVYQLTGTSSL------------GSYCC 710
+ EC+ G P P+ W +++ + + +GT + G Y C
Sbjct: 35 ILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQC 94
Query: 711 VAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTV 770
A+N G A LS +L + + PK E L V E T+
Sbjct: 95 FARNKFGTA--------------LSNRIRLQVSKSPLWPK--ENLDP--VVVQEGAPLTL 136
Query: 771 QVSISP---EPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND 827
Q + P P + W + + D ++ + G + L+ Q ++ C A
Sbjct: 137 QCNPPPGLPSPVIFWMSSSMEPITQDK-RVSQGHNGDLYFSNVMLQDM-QTDYSCNARFH 194
Query: 828 FGQSI---TSCFLKLNVPKHY--KKPKFLEELKAVLSE----GGAVNLECKVIGVPQPTL 878
F +I LK+ + + P F+ S+ G + LEC GVP P +
Sbjct: 195 FTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDI 254
Query: 879 KWFKDGREL-----KAGDIHKI-----ISGEDGTCCLGIYTCEAHNCMGT 918
W+K G +L K + +K +S ED G Y C A N MG+
Sbjct: 255 AWYKKGGDLPSDKAKFENFNKALRITNVSEEDS----GEYFCLASNKMGS 300
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 286 FRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
++ GD P +F N+ L I V +D G Y ASN+ G + + +SV +
Sbjct: 257 YKKGGDLPSDKAKFENFNK----ALRITNVSEEDSGEYFCLASNKMG--SIRHTISV--R 308
Query: 346 VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLE 391
V AP ++ ++ + G RL+ + + W N L+
Sbjct: 309 VKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQ 354
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 16/75 (21%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIF-----------ALTANPKDPSSLGTYTCEAVNCMGAAF 50
G+PTP + WYK K GD+ AL G Y C A N MG+
Sbjct: 248 GVPTPDIAWYK-----KGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIR 302
Query: 51 STSRVIARGQQSFLD 65
T V + +LD
Sbjct: 303 HTISVRVKAAPYWLD 317
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 73/184 (39%), Gaps = 33/184 (17%)
Query: 672 CKVVGFPTPTLQWFKDNEELKP------------GDVYQLTGTSSLGSYCCVAKNVMGKA 719
C+V P P + W NEE+ S G Y C G+
Sbjct: 24 CRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC-----EGRV 78
Query: 720 ESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATV--NEEFKFTVQVSISPE 777
E+ ++ DI ++ N P KS AT EE F+ + S SPE
Sbjct: 79 EARGEIDFRDI-----------IVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPE 127
Query: 778 PKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFL 837
P +SWFR+ +++E + ILK + L + + +D + C ATN G+ FL
Sbjct: 128 PAISWFRNG-KLIEENEKYILKGS--NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 184
Query: 838 KLNV 841
++ V
Sbjct: 185 QVFV 188
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 17/177 (9%)
Query: 563 KIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGE 622
K G A + C+V P P + Y+ E V SD M L +++I + D+G
Sbjct: 15 KQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM---LANNNLQILNINKSDEGI 71
Query: 623 WKCVA-TSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPT 681
++C + G F V V +P P+ +S A ++F C+ G P P
Sbjct: 72 YRCEGRVEARGEIDFRDIIVIVNVPPAISMPQ--KSFNATAERGEEMTFSCRASGSPEPA 129
Query: 682 LQWFKDNEELKPGDVYQLTGT-----------SSLGSYCCVAKNVMGKAESSTQLTI 727
+ WF++ + ++ + Y L G+ S G Y C A N G+ E L +
Sbjct: 130 ISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 17/176 (9%)
Query: 764 EEFKFTVQVSISPEPKVSWFRDDQQVVE-SDNVKILKETLGVCHLKIHALEVADQAEWKC 822
E+ + +VS SP P VSW +++V SDN + L +L+I + +D+ ++C
Sbjct: 18 EDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM---LANNNLQILNINKSDEGIYRC 74
Query: 823 IATNDFGQSI--TSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKW 880
+ I + +NVP P+ + A G + C+ G P+P + W
Sbjct: 75 EGRVEARGEIDFRDIIVIVNVPPAISMPQ--KSFNATAERGEEMTFSCRASGSPEPAISW 132
Query: 881 FKDGRELKAGDIHKIISGEDGTCCL--------GIYTCEAHNCMGTTSSSAALLGF 928
F++G+ ++ + + I+ G + + G Y C A N G A L F
Sbjct: 133 FRNGKLIEENEKY-ILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 9/86 (10%)
Query: 439 VLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTAN 498
V VP A P K A ++ C+ G P P + W+++ K I+ + + L +
Sbjct: 93 VNVPPAISMP--QKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGS 150
Query: 499 PKD-------PSSLGTYTCEAVNCMG 517
+ S G Y C A N G
Sbjct: 151 NTELTVRNIINSDGGPYVCRATNKAG 176
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Query: 346 VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFY 405
VP A + ++ + + G E I W+RN + +EEN+ Y + G+
Sbjct: 95 VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK--GSNT 152
Query: 406 FIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV 441
+ + ++ D G + C A N G L V V
Sbjct: 153 ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 188
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 94/436 (21%), Positives = 157/436 (36%), Gaps = 89/436 (20%)
Query: 446 KAPFFTKELEAIL--TEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD-- 501
K P F KE + + +ECK G P P++IW + + GD+ L D
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSD-GTAVGDVPGLRQISSDGK 60
Query: 502 ----PSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEV 557
P Y E + A +AR Q + + DV +++ + E
Sbjct: 61 LVFPPFRAEDYRQEVHAQVYAC------LARNQFGSIISRDVHVRAVVIQS----YESEA 110
Query: 558 ENVKAKIGTSAILECQV--LVPPWPRSIYWYNKEG-------VVEASDKYHIMADGLGGY 608
+N G S +++C++ V + W + EG E KY ++ G
Sbjct: 111 DNEYVIRGNSVVMKCEIPSYVADFVFVDLWLDSEGRNYYPNNAAETDGKYLVLPSG---- 166
Query: 609 SIEINYLEAVDDGEWKCVATSS----SGVKQFSAAYVHVLM--PKNYRKPRFVESLKAVM 662
E++ E + +K + +G + SA +++ P +P+ K
Sbjct: 167 --ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGSVRPKVNPQDKHQF 224
Query: 663 TDDGLV---SFECKVVGFPTPTLQWFKDNEELKPGD-------VYQLTGTSSL------- 705
D L S C +PTP+ +W+K E V Q++GT +
Sbjct: 225 IDVELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVED 284
Query: 706 -GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT-VN 763
G Y CV N +G T LT+ AP + Q
Sbjct: 285 SGKYLCVVNNSVGGESVETVLTV-------------------TAPLSAKIDPPTQTVDFG 325
Query: 764 EEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCI 823
FT Q + +P VSW +D + + S++V L+I +++ D+ ++C
Sbjct: 326 RPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV-----------LRIESVKKEDKGMYQCF 374
Query: 824 ATNDFGQSITSCFLKL 839
ND + S LKL
Sbjct: 375 VRNDRESAEASAELKL 390
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 22/159 (13%)
Query: 776 PEPKVSWFR------DDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFG 829
P P W++ Q VV +D VK + TL I V D ++ C+ N G
Sbjct: 243 PTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTL-----IIKDAVVEDSGKYLCVVNNSVG 297
Query: 830 QSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKA 889
L + P K ++ + G C+ G P T+ W KDG+ +
Sbjct: 298 GESVETVLTVTAPLSAK----IDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH 353
Query: 890 GD-IHKI--ISGEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
+ + +I + ED G+Y C N + +SA L
Sbjct: 354 SESVLRIESVKKEDK----GMYQCFVRNDRESAEASAEL 388
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 12/76 (15%)
Query: 416 DSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELE----AILTEQGTVSLECKVM 471
DSG++ C+ N+VG L+V P + K T+ ++ A+ T C+
Sbjct: 284 DSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFT--------CQYT 335
Query: 472 GIPTPQLIWYKDNKKI 487
G P + W KD K I
Sbjct: 336 GNPIKTVSWMKDGKAI 351
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 847 KPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL 905
+P FL+ + + EG ++CKV G+P P L W DG+ ++ HK++ E+G L
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSL 68
Query: 906 ----------GIYTCEAHNCMGTTSSSAALL 926
GIYTC A N G S S L+
Sbjct: 69 IIEPVTSRDAGIYTCIATNRAGQNSFSLELV 99
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 15/92 (16%)
Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQL----TGTSSL 705
+P F+++ + +G L +CKV G PTP L W D + ++P +++ G SL
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSL 68
Query: 706 ----------GSYCCVAKNVMGKAESSTQLTI 727
G Y C+A N G+ S +L +
Sbjct: 69 IIEPVTSRDAGIYTCIATNRAGQNSFSLELVV 100
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 448 PFFTKELEAILTEQGTVS-LECKVMGIPTPQLIWYKDNKKIKA----------GDIFALT 496
P F + + ++G + ++CKV G+PTP L W D K ++ + +L
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 497 ANPKDPSSLGTYTCEAVNCMGA-AFSTSRVIA 527
P G YTC A N G +FS V+A
Sbjct: 70 IEPVTSRDAGIYTCIATNRAGQNSFSLELVVA 101
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLK 808
P F++ + + +VS P P +SW D + V K+L GV L
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 809 IHALEVADQAEWKCIATNDFGQS 831
I + D + CIATN GQ+
Sbjct: 70 IEPVTSRDAGIYTCIATNRAGQN 92
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQ-HDGNFYFID 408
P F++ D+ V+ G R+ ++ + W + + + + ++ + + +
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+ V+ D+G +TC+A N G++ S EL V
Sbjct: 70 IEPVTSRDAGIYTCIATNRAGQNSFSLELVV 100
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 2 GIPTPQLIWYKDNKKIKA----------GDIFALTANPKDPSSLGTYTCEAVNCMGA-AF 50
G+PTP L W D K ++ + +L P G YTC A N G +F
Sbjct: 35 GLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSF 94
Query: 51 STSRVIA 57
S V+A
Sbjct: 95 SLELVVA 101
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 83/207 (40%), Gaps = 28/207 (13%)
Query: 449 FFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK------------AGDIFALT 496
F K ++ I G S C+ G P P++ W K KK+ AG + +
Sbjct: 9 FIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQ 68
Query: 497 ANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKE 556
+ P Y C A N G V + + L D +PPG I +
Sbjct: 69 PL-RTPRDENIYECVAQNPHG------EVTVHAKLTVLREDQ------LPPGFPNIDMGP 115
Query: 557 VENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLE 616
V + T+ +L C P P ++ + V ++ I GG IE + E
Sbjct: 116 QLKVVERTRTATML-CAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIESS--E 172
Query: 617 AVDDGEWKCVATSSSGVKQFSAAYVHV 643
D G+++CVA++S+GV+ S A ++V
Sbjct: 173 ETDQGKYECVASNSAGVRYSSPANLYV 199
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 34/202 (16%)
Query: 652 PRFVES-LKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGS--- 707
P F++ + + G+ SF C+ G P P + W K +++ + S G+
Sbjct: 7 PVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 708 ------------YCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL 755
Y CVA+N G+ +LT+ ED+L P F
Sbjct: 67 IQPLRTPRDENIYECVAQNPHGEVTVHAKLTV-------LREDQL-------PPGFPNID 112
Query: 756 KSCQATVNEEFKFTVQV---SISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHAL 812
Q V E + + S +P+P+++WF+D V S + +K+ L L+I +
Sbjct: 113 MGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQ-LRSGGLQIESS 171
Query: 813 EVADQAEWKCIATNDFGQSITS 834
E DQ +++C+A+N G +S
Sbjct: 172 EETDQGKYECVASNSAGVRYSS 193
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 75/177 (42%), Gaps = 23/177 (12%)
Query: 768 FTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETLGVCHLKIHALEVA-DQAEWKCIAT 825
F Q + P+P+V+W + ++V I E+ G L+I L D+ ++C+A
Sbjct: 26 FVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV-LRIQPLRTPRDENIYECVAQ 84
Query: 826 NDFGQSITSCFLKL----NVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWF 881
N G+ L + +P + +LK V A L C G P P + WF
Sbjct: 85 NPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERTRTATML-CAASGNPDPEITWF 143
Query: 882 KD----------GR--ELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALL 926
KD GR +L++G + +I S E+ G Y C A N G SS A L
Sbjct: 144 KDFLPVDPSTSNGRIKQLRSGGL-QIESSEETD--QGKYECVASNSAGVRYSSPANL 197
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 74/190 (38%), Gaps = 21/190 (11%)
Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYH-IMADGLGGYS 609
P+FIK+ + G A CQ P PR + W NK+G S ++ I D G
Sbjct: 7 PVFIKKPVDQIGVSGGVASFVCQATGDPKPR-VTW-NKKGKKVNSQRFETIEFDESAGAV 64
Query: 610 IEINYLEAV-DDGEWKCVATSSSGVKQFSAAYVHV---LMPKNYRKPRFVESLKAVMTDD 665
+ I L D+ ++CVA + G A + +P + LK V+
Sbjct: 65 LRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLK-VVERT 123
Query: 666 GLVSFECKVVGFPTPTLQWFKDNEELKP----GDVYQL---------TGTSSLGSYCCVA 712
+ C G P P + WFKD + P G + QL + + G Y CVA
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYECVA 183
Query: 713 KNVMGKAESS 722
N G SS
Sbjct: 184 SNSAGVRYSS 193
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 11/76 (14%)
Query: 861 GGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL-----------GIYT 909
GG + C+ G P+P + W K G+++ + I E L IY
Sbjct: 21 GGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENIYE 80
Query: 910 CEAHNCMGTTSSSAAL 925
C A N G + A L
Sbjct: 81 CVAQNPHGEVTVHAKL 96
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 20/150 (13%)
Query: 298 RFRAINRDGRTELNIR----RVRRDDGGRYSVTASNESGYSTAKFELSV--ESQVPDAPA 351
RF I D +R R RD+ Y A N G T +L+V E Q+P P
Sbjct: 51 RFETIEFDESAGAVLRIQPLRTPRDEN-IYECVAQNPHGEVTVHAKLTVLREDQLP--PG 107
Query: 352 FIRRLHDIAVKVGTRAR---LLVEIRSPTEIKIHWYRN----DRKLEENKIYRTQHDGNF 404
F +KV R R +L + +I W+++ D +I + + G
Sbjct: 108 FPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGG-- 165
Query: 405 YFIDLSSVSLFDSGRWTCLAENAVGRSHCS 434
+ + S D G++ C+A N+ G + S
Sbjct: 166 --LQIESSEETDQGKYECVASNSAGVRYSS 193
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 8/148 (5%)
Query: 284 FSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
F+F +GD + G R + G + L+I+ V+ D GRY A++ G L +E
Sbjct: 41 FTF-TEGDKSLDG-RIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 98
Query: 344 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI--YRTQHD 401
AP FI G + +++S IHW R+ L +T
Sbjct: 99 Y----APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYST 154
Query: 402 GNFYFIDLSSVSLFDSGRWTCLAENAVG 429
G ++++ S D GR+ C A N +G
Sbjct: 155 GRKMILEIAPTSDNDFGRYNCTATNHIG 182
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 60/169 (35%), Gaps = 30/169 (17%)
Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSL 466
+ + V L DSGR+ C A + +G S L + Y F + + E +++
Sbjct: 65 LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI----EYAPKFISNQTIYYSWEGNPINI 120
Query: 467 ECKVMGIPTPQLIWYKDN-----------KKIKAGDIFALTANPKDPSSLGTYTCEAVNC 515
C V P + W +D K G L P + G Y C A N
Sbjct: 121 SCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNH 180
Query: 516 MGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKI 564
+G F Q+ L DVP + P + I E+ AK+
Sbjct: 181 IGTRF---------QEYILALADVPSS------PYGVKIIELSQTTAKV 214
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 73/188 (38%), Gaps = 24/188 (12%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFR--DDQQVVESD---NVKI-LKETL 802
P I+ LK+ N + P P+++W R D E D + +I +K
Sbjct: 2 PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 803 GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLS-EG 861
G L I ++++D + C A + G S +L + PKF+ S EG
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEY-----APKFISNQTIYYSWEG 115
Query: 862 GAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL-----------GIYTC 910
+N+ C V P ++ W +D L A + + + G + G Y C
Sbjct: 116 NPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNC 175
Query: 911 EAHNCMGT 918
A N +GT
Sbjct: 176 TATNHIGT 183
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 22/181 (12%)
Query: 71 FNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 130
F +GD + G R + G + L+I+ V+ D GRY A++ G L +E
Sbjct: 41 FTFTEGDKSLDG-RIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEY 99
Query: 131 QVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGN 190
AP FI G +P I C D+ + P S + D +
Sbjct: 100 ----APKFISNQTIYYSWEG----------NPINISC--DVKSNPPASIHWRRDKLVLPA 143
Query: 191 R----FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFI 246
+ + + + L I +D GRY+ TA+N G ++ L++ + VP +P +
Sbjct: 144 KNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILAL-ADVPSSPYGV 202
Query: 247 R 247
+
Sbjct: 203 K 203
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 92/227 (40%), Gaps = 30/227 (13%)
Query: 177 FSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
F+F +GD + G R + G + L+I+ V+ D GRY A++ G L +E
Sbjct: 41 FTF-TEGDKSLDG-RIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 98
Query: 237 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFG 296
AP FI G +P I C D+ + P S + D +
Sbjct: 99 Y----APKFISNQTIYYSWEG----------NPINISC--DVKSNPPASIHWRRDKLVLP 142
Query: 297 NR----FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAF 352
+ + + + L I +D GRY+ TA+N G ++ L++ + VP +P
Sbjct: 143 AKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILAL-ADVPSSPYG 201
Query: 353 IR--RLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYR 397
++ L KV + S + IH Y+ D K ++I++
Sbjct: 202 VKIIELSQTTAKVS-----FNKPDSHGGVPIHHYQVDVKEVASEIWK 243
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 74/215 (34%), Gaps = 42/215 (19%)
Query: 651 KPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFK--DNEELKPGD--------VYQLT 700
+P ++ ++G V+ C G P P + W + D GD V
Sbjct: 1 QPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 701 GTSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPK 750
G+SSL G Y C A + +G + S L IE APK
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE------------------YAPK 102
Query: 751 FIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILK--ETLGVCHLK 808
FI + + V +P + W R D+ V+ + N LK T L+
Sbjct: 103 FISNQTIYYSWEGNPINISCDVKSNPPASIHW-RRDKLVLPAKNTTNLKTYSTGRKMILE 161
Query: 809 IHALEVADQAEWKCIATNDFGQSITSCFLKL-NVP 842
I D + C ATN G L L +VP
Sbjct: 162 IAPTSDNDFGRYNCTATNHIGTRFQEYILALADVP 196
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 69/198 (34%), Gaps = 50/198 (25%)
Query: 460 EQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD------------PSSL-- 505
E G V+L C G P P++ W +A D F T K SSL
Sbjct: 14 ENGQVTLVCDAEGEPIPEITWK------RAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHI 67
Query: 506 --------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEV 557
G Y CEA SR+ + +LD + AP FI
Sbjct: 68 KDVKLSDSGRYDCEAA---------SRIGGHQKSMYLDIEY-----------APKFISNQ 107
Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSI-EINYLE 616
+ G + C V P P SI+W + V+ A + ++ G I EI
Sbjct: 108 TIYYSWEGNPINISCDVKSNP-PASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTS 166
Query: 617 AVDDGEWKCVATSSSGVK 634
D G + C AT+ G +
Sbjct: 167 DNDFGRYNCTATNHIGTR 184
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 41/94 (43%), Gaps = 14/94 (14%)
Query: 651 KPRFVESLK-AVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQL---------- 699
KP V L+ ++ D + F K G P PT W KD + + G Y+L
Sbjct: 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLE 65
Query: 700 ---TGTSSLGSYCCVAKNVMGKAESSTQLTIEDI 730
T TS G Y C KN G SS +LTI+ I
Sbjct: 66 IHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKAI 99
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 346 VPDAPAFIRRLHDIAVKVGTRARLLVEIRS---PTEIKIHWYRNDRKLEENKIYRTQHDG 402
+ P + L D V + A+ V+ PT I W ++ + + + Y+ D
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAI---WTKDGKAITQGGKYKLSEDK 59
Query: 403 NFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+F+++ DSG +TC +N+ G SC+L++
Sbjct: 60 GGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLK 808
P + GL+ + + KF V+ + P P W +D + + + K L E G L+
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYK-LSEDKGGFFLE 65
Query: 809 IHALEVADQAEWKCIATNDFGQSITSCFLKL 839
IH + +D + C N G +SC L +
Sbjct: 66 IHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 847 KPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDG---- 901
KP + L+ +S K G P+PT W KDG+ + G +K+ + G
Sbjct: 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLE 65
Query: 902 -----TCCLGIYTCEAHNCMGTTSSSAAL 925
T G+YTC N G+ SSS L
Sbjct: 66 IHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 9/96 (9%)
Query: 442 PKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTAN--- 498
P + K T + ++ K G P P IW KD K I G + L+ +
Sbjct: 2 PISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGG 61
Query: 499 ------PKDPSSLGTYTCEAVNCMGAAFSTSRVIAR 528
D S G YTC N G+ S+ ++ +
Sbjct: 62 FFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTAN---------PKDPSSLGTYTCEAVNCMGAAFST 52
G P P IW KD K I G + L+ + D S G YTC N G+ S+
Sbjct: 32 GEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSS 91
Query: 53 SRVIAR 58
++ +
Sbjct: 92 CKLTIK 97
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 546 PPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGL 605
P P+ + +++ + A + P P +I W + KY + D
Sbjct: 2 PISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAI-WTKDGKAITQGGKYKLSED-K 59
Query: 606 GGYSIEINYLEAVDDGEWKCVATSSSG 632
GG+ +EI+ + D G + C +S+G
Sbjct: 60 GGFFLEIHKTDTSDSGLYTCTVKNSAG 86
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 8/148 (5%)
Query: 284 FSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
F+F +GD + G R + G + L+I+ V+ D GRY A++ G L +E
Sbjct: 41 FTF-TEGDKSLDG-RIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 98
Query: 344 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI--YRTQHD 401
AP FI G + +++S IHW R+ L +T
Sbjct: 99 Y----APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYST 154
Query: 402 GNFYFIDLSSVSLFDSGRWTCLAENAVG 429
G ++++ S D GR+ C A N +G
Sbjct: 155 GRKMILEIAPTSDNDFGRYNCTATNHIG 182
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 67/189 (35%), Gaps = 32/189 (16%)
Query: 387 DRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYK 446
D+ L+ + QH + + + V L DSGR+ C A + +G S L + Y
Sbjct: 47 DKSLDGRIEVKGQHGSSS--LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI----EYA 100
Query: 447 APFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDN-----------KKIKAGDIFAL 495
F + + E +++ C V P + W +D K G L
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMIL 160
Query: 496 TANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIK 555
P + G Y C A N +G F Q+ L DV P P + I
Sbjct: 161 EIAPTSDNDFGRYNCTATNHIGTRF---------QEYILALADV------PSSPYGVKII 205
Query: 556 EVENVKAKI 564
E+ AK+
Sbjct: 206 ELSQTTAKV 214
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 73/188 (38%), Gaps = 24/188 (12%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFR--DDQQVVESD---NVKI-LKETL 802
P I+ LK+ N + P P+++W R D E D + +I +K
Sbjct: 2 PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 803 GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLS-EG 861
G L I ++++D + C A + G S +L + PKF+ S EG
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEY-----APKFISNQTIYYSWEG 115
Query: 862 GAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL-----------GIYTC 910
+N+ C V P ++ W +D L A + + + G + G Y C
Sbjct: 116 NPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNC 175
Query: 911 EAHNCMGT 918
A N +GT
Sbjct: 176 TATNHIGT 183
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 22/181 (12%)
Query: 71 FNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 130
F +GD + G R + G + L+I+ V+ D GRY A++ G L +E
Sbjct: 41 FTFTEGDKSLDG-RIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEY 99
Query: 131 QVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGN 190
AP FI G +P I C D+ + P S + D +
Sbjct: 100 ----APKFISNQTIYYSWEG----------NPINISC--DVKSNPPASIHWRRDKLVLPA 143
Query: 191 R----FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFI 246
+ + + + L I +D GRY+ TA+N G ++ L++ + VP +P +
Sbjct: 144 KNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILAL-ADVPSSPYGV 202
Query: 247 R 247
+
Sbjct: 203 K 203
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 92/227 (40%), Gaps = 30/227 (13%)
Query: 177 FSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
F+F +GD + G R + G + L+I+ V+ D GRY A++ G L +E
Sbjct: 41 FTF-TEGDKSLDG-RIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 98
Query: 237 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFG 296
AP FI G +P I C D+ + P S + D +
Sbjct: 99 Y----APKFISNQTIYYSWEG----------NPINISC--DVKSNPPASIHWRRDKLVLP 142
Query: 297 NR----FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAF 352
+ + + + L I +D GRY+ TA+N G ++ L++ + VP +P
Sbjct: 143 AKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILAL-ADVPSSPYG 201
Query: 353 IR--RLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYR 397
++ L KV + S + IH Y+ D K ++I++
Sbjct: 202 VKIIELSQTTAKVS-----FNKPDSHGGVPIHHYQVDVKEVASEIWK 243
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 77/225 (34%), Gaps = 42/225 (18%)
Query: 651 KPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFK--DNEELKPGD--------VYQLT 700
+P ++ ++G V+ C G P P + W + D GD V
Sbjct: 1 QPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 701 GTSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPK 750
G+SSL G Y C A + +G + S L IE APK
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE------------------YAPK 102
Query: 751 FIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILK--ETLGVCHLK 808
FI + + V +P + W R D+ V+ + N LK T L+
Sbjct: 103 FISNQTIYYSWEGNPINISCDVKSNPPASIHW-RRDKLVLPAKNTTNLKTYSTGRKMILE 161
Query: 809 IHALEVADQAEWKCIATNDFGQSITSCFLKL-NVPKHYKKPKFLE 852
I D + C ATN G L L +VP K +E
Sbjct: 162 IAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIE 206
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 69/198 (34%), Gaps = 50/198 (25%)
Query: 460 EQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD------------PSSL-- 505
E G V+L C G P P++ W +A D F T K SSL
Sbjct: 14 ENGQVTLVCDAEGEPIPEITWK------RAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHI 67
Query: 506 --------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEV 557
G Y CEA SR+ + +LD + AP FI
Sbjct: 68 KDVKLSDSGRYDCEAA---------SRIGGHQKSMYLDIEY-----------APKFISNQ 107
Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSI-EINYLE 616
+ G + C V P P SI+W + V+ A + ++ G I EI
Sbjct: 108 TIYYSWEGNPINISCDVKSNP-PASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTS 166
Query: 617 AVDDGEWKCVATSSSGVK 634
D G + C AT+ G +
Sbjct: 167 DNDFGRYNCTATNHIGTR 184
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 22/141 (15%)
Query: 606 GGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDD 665
G S+ I ++ D G + C A S G Q S Y+ + P+F+ + + +
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKS-MYLDIEY-----APKFISNQTIYYSWE 114
Query: 666 G-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQL---------------TGTSSLGSYC 709
G ++ C V P ++ W +D L + L T + G Y
Sbjct: 115 GNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYN 174
Query: 710 CVAKNVMGKAESSTQLTIEDI 730
C A N +G L + D+
Sbjct: 175 CTATNHIGTRFQEYILALADV 195
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 22/95 (23%)
Query: 843 KHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGE-DG 901
KHYK + EG V C+V G P+P + WFKDG+++ H I + DG
Sbjct: 16 KHYK-----------IFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG 64
Query: 902 TCCL----------GIYTCEAHNCMGTTSSSAALL 926
TC L G YT A N G S + L+
Sbjct: 65 TCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLM 99
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVV-ESDNVKILKETLGVCH 806
AP F LK + FT +V+ +P+PK+ WF+D +Q+ +SD+ I ++ G C
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 67
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
L A + D + +A N G+ SC +L V
Sbjct: 68 LHTTASTLDDDGNYTIMAANPQGR--ISCTGRLMV 100
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 16/97 (16%)
Query: 652 PRFVESLKAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKP-GDVY----QLTGTSSL 705
P F LK +G+ V+F C+V G P P + WFKD +++ P D Y L GT SL
Sbjct: 9 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSL 68
Query: 706 ----------GSYCCVAKNVMGKAESSTQLTIEDIRN 732
G+Y +A N G+ + +L ++ + +
Sbjct: 69 HTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNS 105
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 12/98 (12%)
Query: 447 APFFTKELEAILTEQGT-VSLECKVMGIPTPQLIWYKDNKKIK-AGDIFALTANPKDPSS 504
APFF +L+ +G V+ C+V G P P++ W+KD K+I D + + + S
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 67
Query: 505 L----------GTYTCEAVNCMGAAFSTSRVIARGQQS 532
L G YT A N G T R++ + S
Sbjct: 68 LHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNS 105
Score = 34.7 bits (78), Expect = 0.33, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG--VVEASDKYHIMADGLGG 607
AP F ++++ K G C+V P P+ IYW+ K+G + SD Y I D G
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPK-IYWF-KDGKQISPKSDHYTIQRDLDGT 65
Query: 608 YSIEINYLEAVDDGEWKCVATSSSG 632
S+ DDG + +A + G
Sbjct: 66 CSLHTTASTLDDDGNYTIMAANPQG 90
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLE-ENKIYRTQHD-GNFYF 406
AP F +L + G + + KI+W+++ +++ ++ Y Q D
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 67
Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+ ++ +L D G +T +A N GR C+ L V
Sbjct: 68 LHTTASTLDDDGNYTIMAANPQGRISCTGRLMV 100
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 89/399 (22%), Positives = 153/399 (38%), Gaps = 56/399 (14%)
Query: 153 ARLLVEIRSPTEIKCQFDLNNT-IPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRD 211
A +L +PT ++C + N+ + +S++ G + A+ +D L R +
Sbjct: 14 AEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKD-EGSLVFLRPQAS 72
Query: 212 DGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTE 271
D G Y A +G ++++ R+ + IA T + +E R P +
Sbjct: 73 DEGHYQCFAETPAGVASSRV------------ISFRKTYLIASPAKTHEKTPIEGR-PFQ 119
Query: 272 IKCQFDLNNTIP-----FSFRAQGDHPI-----FGNRFRAINRDGRTELNIRRVRRDDGG 321
+ C L N P + R G P F R A DG I V ++D
Sbjct: 120 LDCV--LPNAYPKPLITWKKRLSGADPNADVTDFDRRITA-GPDGNLYFTI--VTKEDVS 174
Query: 322 ---RYSVTASNES-GYSTAKFELSVESQVPD--------APAFIRRLHDIAVKVGTRARL 369
+Y TA N + E ++ D P ++ + D+ K G +
Sbjct: 175 DIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSK--DMMAKAGDVTMI 232
Query: 370 LVEIRSPTEIKIHWYRNDRKLEENKIYR-TQHDGNFYFIDLSSVSLF-DSGRWTCLAENA 427
S ++++N + + N R T+H+ L +L D G +TC +N
Sbjct: 233 YCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNG 292
Query: 428 VGRSH-CSCELSVLVPKAYKAPFFTKELEAILTEQGT-VSLECKVMGIPTPQLIWYKDNK 485
VG+ S +L+V+ Y+ K + I+ +QG V++ CKV G+P P ++W + K
Sbjct: 293 VGKPQKHSLKLTVVSAPKYEQ----KPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAK 348
Query: 486 KIKAGDIF----ALTANPKDPSSLGTYTCEAVNCMGAAF 520
+ G L G Y C A N G +
Sbjct: 349 PLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKY 387
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 77/368 (20%), Positives = 131/368 (35%), Gaps = 49/368 (13%)
Query: 379 IKIHWYRNDRKL--EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCE 436
+K W ++ + +E+ + +G+ F+ + D G + C AE G +
Sbjct: 37 VKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQAS---DEGHYQCFAETPAG---VASS 90
Query: 437 LSVLVPKAYKAPFFTKELEAILTEQGTVSLECKV-MGIPTPQLIWYKD------------ 483
+ K Y K E E L+C + P P + W K
Sbjct: 91 RVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTD 150
Query: 484 -NKKIKAG---DIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDV 539
+++I AG +++ +D S + Y C A N AA V+ + + D
Sbjct: 151 FDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKN---AAVDEEVVLVEYEIKGVTKD-- 205
Query: 540 PFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYH 599
NS P P ++ + ++ AK G ++ C P Y+ N + V +
Sbjct: 206 --NSGYKGEPVPQYVSK--DMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRI 261
Query: 600 IMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL-MPKNYRKPRFVESL 658
+ G + D+G + C + G Q + + V+ PK +KP
Sbjct: 262 TRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPE----- 316
Query: 659 KAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKPGD--------VYQLTGTSSLGSYC 709
K ++ G V+ CKV G P P + W + + L G V + G Y
Sbjct: 317 KVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYG 376
Query: 710 CVAKNVMG 717
C A N G
Sbjct: 377 CRATNEHG 384
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 16/111 (14%)
Query: 816 DQAEWKCIATNDFGQSITSCFLKLNV---PKHYKKPKFLEELKAVLSEGGAVNLECKVIG 872
D+ + C N G+ LKL V PK+ +KP E V+ +G V + CKV G
Sbjct: 281 DEGVYTCEVDNGVGKPQKHS-LKLTVVSAPKYEQKP----EKVIVVKQGQDVTIPCKVTG 335
Query: 873 VPQPTLKWFKDGRELKAG-----DIHKIISG-EDGTCCLGIYTCEAHNCMG 917
+P P + W + + L G D +I G ++G G Y C A N G
Sbjct: 336 LPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGD--KGYYGCRATNEHG 384
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/299 (24%), Positives = 116/299 (38%), Gaps = 45/299 (15%)
Query: 457 ILTEQGTVSLE------CKVMGIPTPQLI-WYKDN--KKIKAGDIFALTANPKDPSSLGT 507
I+ QG +S+ C+V G + I W+ N K ++ N D S+L
Sbjct: 7 IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTI 66
Query: 508 YTCEAVNCMGAAFSTSRVIAR-GQQSFLDNDDVPFNSLM-PPGPAPIFIKEVENVKAKIG 565
Y N A V A G QS + F LM P P KE G
Sbjct: 67 YNA---NIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKE--------G 115
Query: 566 TSAILECQVLVPPWPRSIYWYNK-EGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWK 624
A++ C V V P +I W +K V+ D I+ L ++I ++ D+G ++
Sbjct: 116 EDAVIVCDV-VSSLPPTIIWKHKGRDVILKKDVRFIV---LSNNYLQIRGIKKTDEGTYR 171
Query: 625 CVA-TSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQ 683
C + G F V V +P + + + + A + V+ C GFP PT+
Sbjct: 172 CEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQS--VTLVCDADGFPEPTMS 229
Query: 684 WFKDNEELK-----------PGDVYQLT----GTSSLGSYCCVAKNVMGKAESSTQLTI 727
W KD E ++ D +LT + Y C+A+N G+ ++S L +
Sbjct: 230 WTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 113/293 (38%), Gaps = 59/293 (20%)
Query: 670 FECKVVG-FPTPTLQWFKDN-EELKPGD-----VYQLTGTSSL----------GSYCCVA 712
F C+V G + WF N E+L P V+ +S+L G Y CV
Sbjct: 22 FLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81
Query: 713 KNVMG-KAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPK-FIEGLKSCQATVNEEFKFTV 770
G ++E++ + I + L+ N P+ F EG E+
Sbjct: 82 TAEDGTQSEATVNVKIF----------QKLMFKNAPTPQEFKEG---------EDAVIVC 122
Query: 771 QVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKC----IATN 826
V S P + W + V+ +V+ + L +L+I ++ D+ ++C +A
Sbjct: 123 DVVSSLPPTIIWKHKGRDVILKKDVRFI--VLSNNYLQIRGIKKTDEGTYRCEGRILARG 180
Query: 827 DFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGR- 885
+ + + +NVP + + + + A + G +V L C G P+PT+ W KDG
Sbjct: 181 EI--NFKDIQVIVNVPPTVQARQSI--VNATANLGQSVTLVCDADGFPEPTMSWTKDGEP 236
Query: 886 -ELKAGDIHKIISGEDGTCCL---------GIYTCEAHNCMGTTSSSAALLGF 928
E + D K I +D + Y C A N G +S L F
Sbjct: 237 IENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 81/230 (35%), Gaps = 23/230 (10%)
Query: 303 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVK 362
N D + L I DD G Y + E G + E +V ++ F K
Sbjct: 57 NDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQS---EATVNVKIFQKLMFKNAPTPQEFK 113
Query: 363 VGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTC 422
G A ++ ++ S I W R + K R N Y + + + D G + C
Sbjct: 114 EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY-LQIRGIKKTDEGTYRC 172
Query: 423 ----LAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQL 478
LA + + ++ V VP +A A L + +V+L C G P P +
Sbjct: 173 EGRILARGEI--NFKDIQVIVNVPPTVQARQSIVNATANLGQ--SVTLVCDADGFPEPTM 228
Query: 479 IWYKDN-----------KKIKAGDIFALTANPKDPSSLGTYTCEAVNCMG 517
W KD K I + D LT D + Y C A N G
Sbjct: 229 SWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAG 278
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 89/258 (34%), Gaps = 38/258 (14%)
Query: 196 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVK 255
N D + L I DD G Y + E G + E +V ++ F K
Sbjct: 57 NDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQS---EATVNVKIFQKLMFKNAPTPQEFK 113
Query: 256 VGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNI 312
G A ++ ++ S PT I ++ +G I R I L I
Sbjct: 114 EGEDAVIVCDVVSSLPPTII-------------WKHKGRDVILKKDVRFIVL-SNNYLQI 159
Query: 313 RRVRRDDGGRYS----VTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRAR 368
R +++ D G Y + A E + ++ V VP + + + +G
Sbjct: 160 RGIKKTDEGTYRCEGRILARGEINFK----DIQVIVNVPPTVQARQSIVNATANLGQSVT 215
Query: 369 LLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSS------VSLFDSGRWTC 422
L+ + E + W ++ +E + + D F D SS V D + C
Sbjct: 216 LVCDADGFPEPTMSWTKDGEPIENEE----EDDEKHIFSDDSSELTIRNVDKNDEAEYVC 271
Query: 423 LAENAVGRSHCSCELSVL 440
+AEN G S L V
Sbjct: 272 IAENKAGEQDASIHLKVF 289
>pdb|2EDL|A Chain A, Solution Structure Of The Ig-Like Domain (3801-3897) Of
Human Obscurin
Length = 110
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 548 GPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGG 607
GPA FI++V+N +A+ G +A+L+C+ L P + W + D+Y + DG
Sbjct: 7 GPAR-FIEDVKNQEAREGATAVLQCE-LSKAAP--VEWRKGSETLRGGDRYSLRQDGT-R 61
Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKA 660
++I+ L D GE+ CV G ++ SA +P RF + LK+
Sbjct: 62 CELQIHGLSVADTGEYSCVC----GQERTSATLTVRALP-----ARFTQDLKS 105
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 750 KFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKI 809
+FIE +K+ +A E +Q +S V W + + + D L++ C L+I
Sbjct: 10 RFIEDVKNQEA--REGATAVLQCELSKAAPVEWRKGSETLRGGDRYS-LRQDGTRCELQI 66
Query: 810 HALEVADQAEWKCIATNDFGQSITSCFLKLN-VPKHYKKPKFLEELKAVLSEG 861
H L VAD E+ C+ GQ TS L + +P +F ++LK+ S G
Sbjct: 67 HGLSVADTGEYSCVC----GQERTSATLTVRALP-----ARFTQDLKSGPSSG 110
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 81/222 (36%), Gaps = 48/222 (21%)
Query: 646 PKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD---------- 695
P R R + L AV + V F C G PTP++ W K+ E + G+
Sbjct: 120 PYWTRPERMDKKLLAVPAAN-TVRFRCPAAGNPTPSISWLKNGREFR-GEHRIGGIKLRH 177
Query: 696 -----VYQLTGTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPK 750
V + S G+Y CV +N G + L + + H P
Sbjct: 178 QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPH--------------RPI 223
Query: 751 FIEGLKSCQ-ATVNEEFKFTVQVSISPEPKVSWFRDDQ--------------QVVESDNV 795
GL + Q A + + +F +V +P + W + + V+++
Sbjct: 224 LQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGA 283
Query: 796 KILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFL 837
+ L V L +H + D E+ C+A N G S S +L
Sbjct: 284 NTTDKELEV--LSLHNVTFEDAGEYTCLAGNSIGFSHHSAWL 323
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 76/190 (40%), Gaps = 37/190 (19%)
Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
+F + +P P +SW ++ ++ + +K L + ++ +D+ + C+ N
Sbjct: 142 RFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVEN 201
Query: 827 DFG---QSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFK- 882
FG Q+ T L+ + + + AVL G V CKV QP ++W K
Sbjct: 202 KFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVL--GSDVEFHCKVYSDAQPHIQWLKH 259
Query: 883 ----------DG----------------RELKAGDIHKIISGEDGTCCLGIYTCEAHNCM 916
DG +EL+ +H ++ ED G YTC A N +
Sbjct: 260 VEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHN-VTFEDA----GEYTCLAGNSI 314
Query: 917 GTTSSSAALL 926
G + SA L+
Sbjct: 315 GFSHHSAWLV 324
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 20/167 (11%)
Query: 289 QGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 348
+G+H I G + R + L + V D G Y+ N+ G + L V + P
Sbjct: 165 RGEHRIGGIKLR----HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPH 220
Query: 349 APAFIRRL--HDIAVKVGTRARLLVEIRSPTEIKIHWYR----NDRKLEEN-----KIYR 397
P L + AV +G+ ++ S + I W + N K+ + + +
Sbjct: 221 RPILQAGLPANQTAV-LGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLK 279
Query: 398 TQH----DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
T D + L +V+ D+G +TCLA N++G SH S L VL
Sbjct: 280 TAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVL 326
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 81/230 (35%), Gaps = 59/230 (25%)
Query: 447 APFFT------KELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA----GDI---- 492
AP++T K+L A+ TV C G PTP + W K+ ++ + G I
Sbjct: 119 APYWTRPERMDKKLLAV-PAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRH 177
Query: 493 --FALTANPKDPSSLGTYTCEAVNCMGAAFSTSR--VIARGQQSFLDNDDVPFNSLMPPG 548
++L PS G YTC N G+ T V+ R + +P N G
Sbjct: 178 QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLG 237
Query: 549 --------------PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEA 594
P ++K VE +K+G VL K
Sbjct: 238 SDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVL------------KTAGANT 285
Query: 595 SDKYHIMADGLGGYSIEINYLEAV---DDGEWKCVATSSSGVKQFSAAYV 641
+DK +E+ L V D GE+ C+A +S G SA V
Sbjct: 286 TDK-----------ELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV 324
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 844 HYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKA 889
++ +P+ +++ + V C G P P++ W K+GRE +
Sbjct: 121 YWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRG 166
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 75/201 (37%), Gaps = 45/201 (22%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD--------------VYQLTGTSSLGSYCCVAK 713
V F C G P PT++W K+ +E K + + S G+Y CV +
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 88
Query: 714 NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT-VNEEFKFTVQV 772
N G + L + + H P GL + +T V + +F +V
Sbjct: 89 NEYGSINHTYHLDVVERSRH--------------RPILQAGLPANASTVVGGDVEFVCKV 134
Query: 773 SISPEPKVSWFRDDQ--------------QVVESDNVKILKETLGVCHLKIHALEVADQA 818
+P + W + + +V+++ V + + V +++ E D
Sbjct: 135 YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFE--DAG 192
Query: 819 EWKCIATNDFGQSITSCFLKL 839
E+ C+A N G S S +L +
Sbjct: 193 EYTCLAGNSIGISFHSAWLTV 213
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 88/234 (37%), Gaps = 60/234 (25%)
Query: 446 KAPFFT------KELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA---------- 489
+AP++T K L A+ TV C G P P + W K+ K+ K
Sbjct: 6 RAPYWTNTEKMEKRLHAVPAAN-TVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 64
Query: 490 GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSR--VIARGQQSFLDNDDVPFNSLMPP 547
++L PS G YTC N G+ T V+ R + + +P N+
Sbjct: 65 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVV 124
Query: 548 G--------------PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVE 593
G P +IK VE +K G + +VL K V
Sbjct: 125 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVL------------KAAGVN 172
Query: 594 ASDKYHIMADGLGGYSIEINYLEAV---DDGEWKCVATSSSGVKQFSAAYVHVL 644
+DK IE+ Y+ V D GE+ C+A +S G+ F +A++ VL
Sbjct: 173 TTDK-----------EIEVLYIRNVTFEDAGEYTCLAGNSIGI-SFHSAWLTVL 214
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 75/187 (40%), Gaps = 33/187 (17%)
Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
KF +P P + W ++ ++ + + K L + ++ +D+ + C+ N
Sbjct: 30 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 89
Query: 827 DFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSE--GGAVNLECKVIGVPQPTLKWFK-- 882
++G SI + V + +P L A S GG V CKV QP ++W K
Sbjct: 90 EYG-SINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 148
Query: 883 ---------DG----RELKAGDIH-----------KIISGEDGTCCLGIYTCEAHNCMGT 918
DG + LKA ++ + ++ ED G YTC A N +G
Sbjct: 149 EKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA----GEYTCLAGNSIGI 204
Query: 919 TSSSAAL 925
+ SA L
Sbjct: 205 SFHSAWL 211
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 14/151 (9%)
Query: 304 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRL-HDIAVK 362
R+ L + V D G Y+ NE G + L V + P L + +
Sbjct: 64 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTV 123
Query: 363 VGTRARLLVEIRSPTEIKIHWYRNDRK---------LEENKIYRTQH----DGNFYFIDL 409
VG + ++ S + I W ++ K L K+ + D + +
Sbjct: 124 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYI 183
Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
+V+ D+G +TCLA N++G S S L+VL
Sbjct: 184 RNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 214
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 26/168 (15%)
Query: 381 IHWYRNDRKL-EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+ W +N ++ +E++I + + + + SV D G +TC+ EN G + + L V
Sbjct: 43 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 102
Query: 440 LVPKAYKAPFFTKELEAILTE--QGTVSLECKVMGIPTPQLIWYKDNKK----------- 486
V ++ P L A + G V CKV P + W K +K
Sbjct: 103 -VERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLP 161
Query: 487 -IKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTS 523
+K + K+ L G YTC A N +G +F ++
Sbjct: 162 YLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSA 209
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 849 KFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELK 888
K + L AV + V C G P PT++W K+G+E K
Sbjct: 15 KMEKRLHAVPA-ANTVKFRCPAGGNPMPTMRWLKNGKEFK 53
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 58/160 (36%), Gaps = 41/160 (25%)
Query: 605 LGGYSIEINY----LEAV---DDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVES 657
+GGY + + +E+V D G + CV + G + Y ++ ++ +P
Sbjct: 58 IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG--SINHTYHLDVVERSRHRPILQAG 115
Query: 658 LKAVMTD--DGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL---------- 705
L A + G V F CKV P +QW K E K G Y G L
Sbjct: 116 LPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVE--KNGSKYGPDGLPYLKVLKAAGVNT 173
Query: 706 ------------------GSYCCVAKNVMGKAESSTQLTI 727
G Y C+A N +G + S LT+
Sbjct: 174 TDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 213
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 75/201 (37%), Gaps = 45/201 (22%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD--------------VYQLTGTSSLGSYCCVAK 713
V F C G P PT++W K+ +E K + + S G+Y CV +
Sbjct: 27 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 86
Query: 714 NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT-VNEEFKFTVQV 772
N G + L + + H P GL + +T V + +F +V
Sbjct: 87 NEYGSINHTYHLDVVERSRH--------------RPILQAGLPANASTVVGGDVEFVCKV 132
Query: 773 SISPEPKVSWFRDDQ--------------QVVESDNVKILKETLGVCHLKIHALEVADQA 818
+P + W + + +V+++ V + + V +++ E D
Sbjct: 133 YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFE--DAG 190
Query: 819 EWKCIATNDFGQSITSCFLKL 839
E+ C+A N G S S +L +
Sbjct: 191 EYTCLAGNSIGISFHSAWLTV 211
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 88/234 (37%), Gaps = 60/234 (25%)
Query: 446 KAPFFT------KELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA---------- 489
+AP++T K L A+ TV C G P P + W K+ K+ K
Sbjct: 4 RAPYWTNTEKMEKRLHAVPAAN-TVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 62
Query: 490 GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSR--VIARGQQSFLDNDDVPFNSLMPP 547
++L PS G YTC N G+ T V+ R + + +P N+
Sbjct: 63 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVV 122
Query: 548 G--------------PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVE 593
G P +IK VE +K G + +VL K V
Sbjct: 123 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVL------------KAAGVN 170
Query: 594 ASDKYHIMADGLGGYSIEINYLEAV---DDGEWKCVATSSSGVKQFSAAYVHVL 644
+DK IE+ Y+ V D GE+ C+A +S G+ F +A++ VL
Sbjct: 171 TTDK-----------EIEVLYIRNVTFEDAGEYTCLAGNSIGI-SFHSAWLTVL 212
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 75/187 (40%), Gaps = 33/187 (17%)
Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
KF +P P + W ++ ++ + + K L + ++ +D+ + C+ N
Sbjct: 28 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 87
Query: 827 DFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSE--GGAVNLECKVIGVPQPTLKWFK-- 882
++G SI + V + +P L A S GG V CKV QP ++W K
Sbjct: 88 EYG-SINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 146
Query: 883 ---------DG----RELKAGDIH-----------KIISGEDGTCCLGIYTCEAHNCMGT 918
DG + LKA ++ + ++ ED G YTC A N +G
Sbjct: 147 EKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA----GEYTCLAGNSIGI 202
Query: 919 TSSSAAL 925
+ SA L
Sbjct: 203 SFHSAWL 209
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 14/151 (9%)
Query: 304 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRL-HDIAVK 362
R+ L + V D G Y+ NE G + L V + P L + +
Sbjct: 62 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTV 121
Query: 363 VGTRARLLVEIRSPTEIKIHWYRNDRK---------LEENKIYRTQH----DGNFYFIDL 409
VG + ++ S + I W ++ K L K+ + D + +
Sbjct: 122 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYI 181
Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
+V+ D+G +TCLA N++G S S L+VL
Sbjct: 182 RNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 212
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 26/168 (15%)
Query: 381 IHWYRNDRKL-EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+ W +N ++ +E++I + + + + SV D G +TC+ EN G + + L V
Sbjct: 41 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 100
Query: 440 LVPKAYKAPFFTKELEAILTE--QGTVSLECKVMGIPTPQLIWYKDNKK----------- 486
V ++ P L A + G V CKV P + W K +K
Sbjct: 101 -VERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLP 159
Query: 487 -IKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTS 523
+K + K+ L G YTC A N +G +F ++
Sbjct: 160 YLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSA 207
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 849 KFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELK 888
K + L AV + V C G P PT++W K+G+E K
Sbjct: 13 KMEKRLHAVPA-ANTVKFRCPAGGNPMPTMRWLKNGKEFK 51
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 58/160 (36%), Gaps = 41/160 (25%)
Query: 605 LGGYSIEINY----LEAV---DDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVES 657
+GGY + + +E+V D G + CV + G + Y ++ ++ +P
Sbjct: 56 IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG--SINHTYHLDVVERSRHRPILQAG 113
Query: 658 LKAVMTD--DGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL---------- 705
L A + G V F CKV P +QW K E K G Y G L
Sbjct: 114 LPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVE--KNGSKYGPDGLPYLKVLKAAGVNT 171
Query: 706 ------------------GSYCCVAKNVMGKAESSTQLTI 727
G Y C+A N +G + S LT+
Sbjct: 172 TDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 211
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 31/195 (15%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLG----- 803
P I G + T+ + +QV P P+V W RD Q + +D+ + + LG
Sbjct: 9 PGNITGARGLTGTL----RCQLQVQGEP-PEVHWLRDGQILELADSTQT-QVPLGEDEQD 62
Query: 804 ----VCHLKIHALEVADQAEWKCIATNDFGQSITS-CFLKLNVPKHYKKPKFLEELK-AV 857
V L+I +L+++D +++C+ ++ ++ L P FLEE +
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLE-----GLPYFLEEPEDRT 117
Query: 858 LSEGGAVNLECKVIGVPQPT-LKWFKDGRELKAGDIHKI-----ISGEDGTCCLGIYTCE 911
++ NL C+ G P+P L W +D L H + G + T ++CE
Sbjct: 118 VAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSS---FSCE 174
Query: 912 AHNCMGTTSSSAALL 926
AHN G T+S A +
Sbjct: 175 AHNAKGVTTSRTATI 189
Score = 36.6 bits (83), Expect = 0.074, Method: Composition-based stats.
Identities = 39/187 (20%), Positives = 66/187 (35%), Gaps = 21/187 (11%)
Query: 553 FIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMA--------DG 604
F+ N+ G + L CQ+ V P ++W ++E +D D
Sbjct: 5 FVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDW 64
Query: 605 LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLK-AVMT 663
+ + I L+ D G+++C+ YV + P F+E + +
Sbjct: 65 IVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGL-----EGLPYFLEEPEDRTVA 119
Query: 664 DDGLVSFECKVVGFPTPT-LQWFKDNEELK------PGDVYQLTGTSSLGSYCCVAKNVM 716
+ + C+ G P P L W +D L P + G + S+ C A N
Sbjct: 120 ANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAHNAK 179
Query: 717 GKAESST 723
G S T
Sbjct: 180 GVTTSRT 186
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 75/201 (37%), Gaps = 45/201 (22%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD--------------VYQLTGTSSLGSYCCVAK 713
V F C G P PT++W K+ +E K + + S G+Y CV +
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 88
Query: 714 NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT-VNEEFKFTVQV 772
N G + L + + H P GL + +T V + +F +V
Sbjct: 89 NEYGSINHTYHLDVVERSPH--------------RPILQAGLPANASTVVGGDVEFVCKV 134
Query: 773 SISPEPKVSWFRDDQ--------------QVVESDNVKILKETLGVCHLKIHALEVADQA 818
+P + W + + +V+++ V + + V +++ E D
Sbjct: 135 YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFE--DAG 192
Query: 819 EWKCIATNDFGQSITSCFLKL 839
E+ C+A N G S S +L +
Sbjct: 193 EYTCLAGNSIGISFHSAWLTV 213
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 87/234 (37%), Gaps = 60/234 (25%)
Query: 446 KAPFFT------KELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA---------- 489
+AP++T K L A+ TV C G P P + W K+ K+ K
Sbjct: 6 RAPYWTNTEKMEKRLHAVPAAN-TVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 64
Query: 490 GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSR--VIARGQQSFLDNDDVPFNSLMPP 547
++L PS G YTC N G+ T V+ R + +P N+
Sbjct: 65 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVV 124
Query: 548 G--------------PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVE 593
G P +IK VE +K G + +VL K V
Sbjct: 125 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVL------------KAAGVN 172
Query: 594 ASDKYHIMADGLGGYSIEINYLEAV---DDGEWKCVATSSSGVKQFSAAYVHVL 644
+DK IE+ Y+ V D GE+ C+A +S G+ F +A++ VL
Sbjct: 173 TTDK-----------EIEVLYIRNVTFEDAGEYTCLAGNSIGI-SFHSAWLTVL 214
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 75/187 (40%), Gaps = 33/187 (17%)
Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
KF +P P + W ++ ++ + + K L + ++ +D+ + C+ N
Sbjct: 30 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 89
Query: 827 DFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSE--GGAVNLECKVIGVPQPTLKWFK-- 882
++G SI + V + +P L A S GG V CKV QP ++W K
Sbjct: 90 EYG-SINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 148
Query: 883 ---------DG----RELKAGDIH-----------KIISGEDGTCCLGIYTCEAHNCMGT 918
DG + LKA ++ + ++ ED G YTC A N +G
Sbjct: 149 EKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA----GEYTCLAGNSIGI 204
Query: 919 TSSSAAL 925
+ SA L
Sbjct: 205 SFHSAWL 211
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 14/151 (9%)
Query: 304 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRL-HDIAVK 362
R+ L + V D G Y+ NE G + L V + P P L + +
Sbjct: 64 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTV 123
Query: 363 VGTRARLLVEIRSPTEIKIHWYRNDRK---------LEENKIYRTQH----DGNFYFIDL 409
VG + ++ S + I W ++ K L K+ + D + +
Sbjct: 124 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYI 183
Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
+V+ D+G +TCLA N++G S S L+VL
Sbjct: 184 RNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 214
Score = 37.0 bits (84), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 26/168 (15%)
Query: 381 IHWYRNDRKL-EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+ W +N ++ +E++I + + + + SV D G +TC+ EN G + + L V
Sbjct: 43 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 102
Query: 440 LVPKAYKAPFFTKELEAILTE--QGTVSLECKVMGIPTPQLIWYKDNKK----------- 486
V ++ P L A + G V CKV P + W K +K
Sbjct: 103 -VERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLP 161
Query: 487 -IKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTS 523
+K + K+ L G YTC A N +G +F ++
Sbjct: 162 YLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSA 209
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 851 LEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELK 888
+E+ + V C G P PT++W K+G+E K
Sbjct: 16 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK 53
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL- 905
P+F++ + + + EG ++ KV G+P P + W+ +GR +++ D+HK+I E G L
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 906 ---------GIYTCEAHNCMGTTSSSAAL 925
G Y C A N G + + L
Sbjct: 66 FEVVRASDAGAYACVAKNRAGEATFTVQL 94
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 15/91 (16%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGD--------------V 696
PRF++ + + D+G + KV G P P + W+ + ++ D +
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 697 YQLTGTSSLGSYCCVAKNVMGKAESSTQLTI 727
+++ S G+Y CVAKN G+A + QL +
Sbjct: 66 FEVVRASDAGAYACVAKNRAGEATFTVQLDV 96
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLK 808
P+FI+ ++ + +VS P P VSW+ + + V D K++ G+ L
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 809 IHALEVADQAEWKCIATNDFGQS 831
+ +D + C+A N G++
Sbjct: 66 FEVVRASDAGAYACVAKNRAGEA 88
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRT-QHDGNFYFID 408
P FI+ ++++ G R+ ++ + WY N R ++ + +++ + + +
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
V D+G + C+A+N G + + +L VL
Sbjct: 66 FEVVRASDAGAYACVAKNRAGEATFTVQLDVL 97
Score = 36.2 bits (82), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 444 AYKAPFFTKELEAILTEQGTVS-LECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDP 502
A P F + E + ++G ++ KV G+P P + WY + + +++ D+ + + K
Sbjct: 2 AMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL 61
Query: 503 SSL----------GTYTCEAVNCMGAAFSTSRV 525
SL G Y C A N G A T ++
Sbjct: 62 HSLIFEVVRASDAGAYACVAKNRAGEATFTVQL 94
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 10/64 (15%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
G+P P + WY + + +++ D+ + + K SL G Y C A N G A
Sbjct: 31 GLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATF 90
Query: 52 TSRV 55
T ++
Sbjct: 91 TVQL 94
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 75/201 (37%), Gaps = 45/201 (22%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD--------------VYQLTGTSSLGSYCCVAK 713
V F C G P PT++W K+ +E K + + S G+Y CV +
Sbjct: 28 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 87
Query: 714 NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT-VNEEFKFTVQV 772
N G + L + + H P GL + +T V + +F +V
Sbjct: 88 NEYGSINHTYHLDVVERSPH--------------RPILQAGLPANASTVVGGDVEFVCKV 133
Query: 773 SISPEPKVSWFRDDQ--------------QVVESDNVKILKETLGVCHLKIHALEVADQA 818
+P + W + + +V+++ V + + V +++ E D
Sbjct: 134 YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFE--DAG 191
Query: 819 EWKCIATNDFGQSITSCFLKL 839
E+ C+A N G S S +L +
Sbjct: 192 EYTCLAGNSIGISFHSAWLTV 212
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 87/234 (37%), Gaps = 60/234 (25%)
Query: 446 KAPFFT------KELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA---------- 489
+AP++T K L A+ TV C G P P + W K+ K+ K
Sbjct: 5 RAPYWTNTEKMEKRLHAVPAAN-TVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 63
Query: 490 GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSR--VIARGQQSFLDNDDVPFNSLMPP 547
++L PS G YTC N G+ T V+ R + +P N+
Sbjct: 64 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVV 123
Query: 548 G--------------PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVE 593
G P +IK VE +K G + +VL K V
Sbjct: 124 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVL------------KAAGVN 171
Query: 594 ASDKYHIMADGLGGYSIEINYLEAV---DDGEWKCVATSSSGVKQFSAAYVHVL 644
+DK IE+ Y+ V D GE+ C+A +S G+ F +A++ VL
Sbjct: 172 TTDK-----------EIEVLYIRNVTFEDAGEYTCLAGNSIGI-SFHSAWLTVL 213
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 75/187 (40%), Gaps = 33/187 (17%)
Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
KF +P P + W ++ ++ + + K L + ++ +D+ + C+ N
Sbjct: 29 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 88
Query: 827 DFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSE--GGAVNLECKVIGVPQPTLKWFK-- 882
++G SI + V + +P L A S GG V CKV QP ++W K
Sbjct: 89 EYG-SINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 147
Query: 883 ---------DG----RELKAGDIH-----------KIISGEDGTCCLGIYTCEAHNCMGT 918
DG + LKA ++ + ++ ED G YTC A N +G
Sbjct: 148 EKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA----GEYTCLAGNSIGI 203
Query: 919 TSSSAAL 925
+ SA L
Sbjct: 204 SFHSAWL 210
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 14/151 (9%)
Query: 304 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRL-HDIAVK 362
R+ L + V D G Y+ NE G + L V + P P L + +
Sbjct: 63 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTV 122
Query: 363 VGTRARLLVEIRSPTEIKIHWYRNDRK---------LEENKIYRTQH----DGNFYFIDL 409
VG + ++ S + I W ++ K L K+ + D + +
Sbjct: 123 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYI 182
Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
+V+ D+G +TCLA N++G S S L+VL
Sbjct: 183 RNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 213
Score = 37.0 bits (84), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 26/168 (15%)
Query: 381 IHWYRNDRKL-EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+ W +N ++ +E++I + + + + SV D G +TC+ EN G + + L V
Sbjct: 42 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 101
Query: 440 LVPKAYKAPFFTKELEAILTE--QGTVSLECKVMGIPTPQLIWYKDNKK----------- 486
V ++ P L A + G V CKV P + W K +K
Sbjct: 102 -VERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLP 160
Query: 487 -IKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTS 523
+K + K+ L G YTC A N +G +F ++
Sbjct: 161 YLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSA 208
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 851 LEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELK 888
+E+ + V C G P PT++W K+G+E K
Sbjct: 15 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK 52
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 75/201 (37%), Gaps = 45/201 (22%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD--------------VYQLTGTSSLGSYCCVAK 713
V F C G P PT++W K+ +E K + + S G+Y CV +
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 88
Query: 714 NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT-VNEEFKFTVQV 772
N G + L + + H P GL + +T V + +F +V
Sbjct: 89 NEYGSINHTYHLDVVERWPH--------------RPILQAGLPANASTVVGGDVEFVCKV 134
Query: 773 SISPEPKVSWFRDDQ--------------QVVESDNVKILKETLGVCHLKIHALEVADQA 818
+P + W + + +V+++ V + + V +++ E D
Sbjct: 135 YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFE--DAG 192
Query: 819 EWKCIATNDFGQSITSCFLKL 839
E+ C+A N G S S +L +
Sbjct: 193 EYTCLAGNSIGISFHSAWLTV 213
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 87/234 (37%), Gaps = 60/234 (25%)
Query: 446 KAPFFT------KELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA---------- 489
+AP++T K L A+ TV C G P P + W K+ K+ K
Sbjct: 6 RAPYWTNTEKMEKRLHAVPAAN-TVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 64
Query: 490 GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSR--VIARGQQSFLDNDDVPFNSLMPP 547
++L PS G YTC N G+ T V+ R + +P N+
Sbjct: 65 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVV 124
Query: 548 G--------------PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVE 593
G P +IK VE +K G + +VL K V
Sbjct: 125 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVL------------KAAGVN 172
Query: 594 ASDKYHIMADGLGGYSIEINYLEAV---DDGEWKCVATSSSGVKQFSAAYVHVL 644
+DK IE+ Y+ V D GE+ C+A +S G+ F +A++ VL
Sbjct: 173 TTDK-----------EIEVLYIRNVTFEDAGEYTCLAGNSIGI-SFHSAWLTVL 214
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 75/187 (40%), Gaps = 33/187 (17%)
Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
KF +P P + W ++ ++ + + K L + ++ +D+ + C+ N
Sbjct: 30 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 89
Query: 827 DFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSE--GGAVNLECKVIGVPQPTLKWFK-- 882
++G SI + V + +P L A S GG V CKV QP ++W K
Sbjct: 90 EYG-SINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 148
Query: 883 ---------DG----RELKAGDIH-----------KIISGEDGTCCLGIYTCEAHNCMGT 918
DG + LKA ++ + ++ ED G YTC A N +G
Sbjct: 149 EKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA----GEYTCLAGNSIGI 204
Query: 919 TSSSAAL 925
+ SA L
Sbjct: 205 SFHSAWL 211
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 14/151 (9%)
Query: 304 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRL-HDIAVK 362
R+ L + V D G Y+ NE G + L V + P P L + +
Sbjct: 64 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTV 123
Query: 363 VGTRARLLVEIRSPTEIKIHWYRNDRK---------LEENKIYRTQH----DGNFYFIDL 409
VG + ++ S + I W ++ K L K+ + D + +
Sbjct: 124 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYI 183
Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
+V+ D+G +TCLA N++G S S L+VL
Sbjct: 184 RNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 214
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 26/168 (15%)
Query: 381 IHWYRNDRKL-EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+ W +N ++ +E++I + + + + SV D G +TC+ EN G + + L V
Sbjct: 43 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 102
Query: 440 LVPKAYKAPFFTKELEAILTE--QGTVSLECKVMGIPTPQLIWYKDNKK----------- 486
V + P L A + G V CKV P + W K +K
Sbjct: 103 -VERWPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLP 161
Query: 487 -IKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTS 523
+K + K+ L G YTC A N +G +F ++
Sbjct: 162 YLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSA 209
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 851 LEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELK 888
+E+ + V C G P PT++W K+G+E K
Sbjct: 16 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK 53
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 85/225 (37%), Gaps = 43/225 (19%)
Query: 646 PKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD---------- 695
P R R + L AV + V F C G PTP++ W K+ E + G+
Sbjct: 12 PYWTRPERMDKKLLAVPAAN-TVRFRCPAAGNPTPSISWLKNGREFR-GEHRIGGIKLRH 69
Query: 696 -----VYQLTGTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPK 750
V + S G+Y CV +N G + L + + H P
Sbjct: 70 QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPH--------------RPI 115
Query: 751 FIEGLKSCQ-ATVNEEFKFTVQVSISPEPKVSWFRD---DQQVVESDN---VKILKETLG 803
GL + Q A + + +F +V +P + W + + V D V +LK +
Sbjct: 116 LQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWIS 175
Query: 804 V-----CHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPK 843
L++ + D E+ C ATN G + + +L ++ P+
Sbjct: 176 ESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPR 220
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 5/119 (4%)
Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
+F + +P P +SW ++ ++ + +K L + ++ +D+ + C+ N
Sbjct: 34 RFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVEN 93
Query: 827 DFG---QSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFK 882
FG Q+ T L+ + + + AVL G V CKV QP ++W K
Sbjct: 94 KFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVL--GSDVEFHCKVYSDAQPHIQWLK 150
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 17/92 (18%)
Query: 447 APFFT------KELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA----GDI---- 492
AP++T K+L A+ TV C G PTP + W K+ ++ + G I
Sbjct: 11 APYWTRPERMDKKLLAVPAAN-TVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRH 69
Query: 493 --FALTANPKDPSSLGTYTCEAVNCMGAAFST 522
++L PS G YTC N G+ T
Sbjct: 70 QQWSLVMESVVPSDRGNYTCVVENKFGSIRQT 101
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 14/94 (14%)
Query: 844 HYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKI----ISGE 899
++ +P+ +++ + V C G P P++ W K+GRE + H+I + +
Sbjct: 13 YWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGE--HRIGGIKLRHQ 70
Query: 900 DGTCCL--------GIYTCEAHNCMGTTSSSAAL 925
+ + G YTC N G+ + L
Sbjct: 71 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTL 104
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 69/174 (39%), Gaps = 27/174 (15%)
Query: 289 QGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 348
+G+H I G + R + L + V D G Y+ N+ G + L V + P
Sbjct: 57 RGEHRIGGIKLR----HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPH 112
Query: 349 APAFIRRL--HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYF 406
P L + AV +G+ ++ S + I W ++ +E N + DG Y
Sbjct: 113 RPILQAGLPANQTAV-LGSDVEFHCKVYSDAQPHIQWLKH---VEVNG-SKVGPDGTPYV 167
Query: 407 ----------------IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKA 444
+ L++VS D G + C A N +G + + LSV P+A
Sbjct: 168 TVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRA 221
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 76/203 (37%), Gaps = 49/203 (24%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTG----------------TSSLGSYCCV 711
V F C G P PT +W K+ +E K +++ G S G+Y CV
Sbjct: 29 VKFRCPAGGNPXPTXRWLKNGKEFK--QEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCV 86
Query: 712 AKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT-VNEEFKFTV 770
+N G + L + + H P GL + +T V + +F
Sbjct: 87 VENEYGSINHTYHLDVVERSPH--------------RPILQAGLPANASTVVGGDVEFVC 132
Query: 771 QVSISPEPKVSWFRDDQ--------------QVVESDNVKILKETLGVCHLKIHALEVAD 816
+V +P + W + + +V+++ V + + V +++ E D
Sbjct: 133 KVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFE--D 190
Query: 817 QAEWKCIATNDFGQSITSCFLKL 839
E+ C+A N G S S +L +
Sbjct: 191 AGEYTCLAGNSIGISFHSAWLTV 213
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 85/233 (36%), Gaps = 60/233 (25%)
Query: 447 APFFT------KELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA----------G 490
AP++T K L A+ TV C G P P W K+ K+ K
Sbjct: 7 APYWTNTEKXEKRLHAVPAAN-TVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRN 65
Query: 491 DIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSR--VIARGQQSFLDNDDVPFNSLMPPG 548
++L PS G YTC N G+ T V+ R + +P N+ G
Sbjct: 66 QHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVG 125
Query: 549 --------------PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEA 594
P +IK VE +K G + +VL K V
Sbjct: 126 GDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVL------------KAAGVNT 173
Query: 595 SDKYHIMADGLGGYSIEINYLEAV---DDGEWKCVATSSSGVKQFSAAYVHVL 644
+DK IE+ Y+ V D GE+ C+A +S G+ F +A++ VL
Sbjct: 174 TDK-----------EIEVLYIRNVTFEDAGEYTCLAGNSIGI-SFHSAWLTVL 214
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 60/151 (39%), Gaps = 14/151 (9%)
Query: 304 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRL-HDIAVK 362
R+ L V D G Y+ NE G + L V + P P L + +
Sbjct: 64 RNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTV 123
Query: 363 VGTRARLLVEIRSPTEIKIHWYRNDRK---------LEENKIYRTQH----DGNFYFIDL 409
VG + ++ S + I W ++ K L K+ + D + +
Sbjct: 124 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYI 183
Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
+V+ D+G +TCLA N++G S S L+VL
Sbjct: 184 RNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 214
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 73/187 (39%), Gaps = 33/187 (17%)
Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
KF +P P W ++ ++ + + K L ++ +D+ + C+ N
Sbjct: 30 KFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVEN 89
Query: 827 DFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSE--GGAVNLECKVIGVPQPTLKWFK-- 882
++G SI + V + +P L A S GG V CKV QP ++W K
Sbjct: 90 EYG-SINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 148
Query: 883 ---------DG----RELKAGDIH-----------KIISGEDGTCCLGIYTCEAHNCMGT 918
DG + LKA ++ + ++ ED G YTC A N +G
Sbjct: 149 EKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA----GEYTCLAGNSIGI 204
Query: 919 TSSSAAL 925
+ SA L
Sbjct: 205 SFHSAWL 211
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 26/166 (15%)
Query: 383 WYRNDRKL-EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV 441
W +N ++ +E++I + + + SV D G +TC+ EN G + + L V V
Sbjct: 45 WLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDV-V 103
Query: 442 PKAYKAPFFTKELEAILTE--QGTVSLECKVMGIPTPQLIWYKDNKK------------I 487
++ P L A + G V CKV P + W K +K +
Sbjct: 104 ERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYL 163
Query: 488 KAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTS 523
K + K+ L G YTC A N +G +F ++
Sbjct: 164 KVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSA 209
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 864 VNLECKVIGVPQPTLKWFKDGRELK 888
V C G P PT +W K+G+E K
Sbjct: 29 VKFRCPAGGNPXPTXRWLKNGKEFK 53
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 80/205 (39%), Gaps = 48/205 (23%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD--------------VYQLTGTSSLGSYCCVAK 713
V F C G P PT++W K+ +E K + + S G+Y CV +
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 96
Query: 714 NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT-VNEEFKFTVQV 772
N G + L + + H P GL + +T V + +F +V
Sbjct: 97 NEYGSINHTYHLDVVERSRH--------------RPILQAGLPANASTVVGGDVEFVCKV 142
Query: 773 SISPEPKVSWFRDDQQVVESDN----------VKILKET-LGVCHLKIHAL---EVADQA 818
+P + W + VE + +K+LK + + + ++ AL AD
Sbjct: 143 YSDAQPHIQWIKH----VEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAG 198
Query: 819 EWKCIATNDFGQSITSCFLKLNVPK 843
E+ C +N GQ+ S +L + +PK
Sbjct: 199 EYICKVSNYIGQANQSAWLTV-LPK 222
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 3/118 (2%)
Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
KF +P P + W ++ ++ + + K L + ++ +D+ + C+ N
Sbjct: 38 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 97
Query: 827 DFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSE--GGAVNLECKVIGVPQPTLKWFK 882
++G SI + V + +P L A S GG V CKV QP ++W K
Sbjct: 98 EYG-SINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIK 154
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 59/162 (36%), Gaps = 33/162 (20%)
Query: 446 KAPFFT------KELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA---------- 489
+AP++T K L A+ TV C G P P + W K+ K+ K
Sbjct: 14 RAPYWTNTEKMEKRLHAVPAAN-TVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 72
Query: 490 GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSR--VIARGQQSFLDNDDVPFNSLMPP 547
++L PS G YTC N G+ T V+ R + + +P N+
Sbjct: 73 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVV 132
Query: 548 G--------------PAPIFIKEVENVKAKIGTSAILECQVL 575
G P +IK VE +K G + +VL
Sbjct: 133 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVL 174
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 12/113 (10%)
Query: 381 IHWYRNDRKL-EENKI----YRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC 435
+ W +N ++ +E++I R QH + + + SV D G +TC+ EN G + +
Sbjct: 51 MRWLKNGKEFKQEHRIGGYKVRNQH----WSLIMESVVPSDKGNYTCVVENEYGSINHTY 106
Query: 436 ELSVLVPKAYKAPFFTKELEAILTE--QGTVSLECKVMGIPTPQLIWYKDNKK 486
L V V ++ P L A + G V CKV P + W K +K
Sbjct: 107 HLDV-VERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEK 158
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 57/158 (36%), Gaps = 39/158 (24%)
Query: 605 LGGYSIEINY----LEAV---DDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVES 657
+GGY + + +E+V D G + CV + G + Y ++ ++ +P
Sbjct: 66 IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG--SINHTYHLDVVERSRHRPILQAG 123
Query: 658 LKAVMTD--DGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL---------- 705
L A + G V F CKV P +QW K E K G Y G L
Sbjct: 124 LPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVE--KNGSKYGPDGLPYLKVLKHSGINS 181
Query: 706 ----------------GSYCCVAKNVMGKAESSTQLTI 727
G Y C N +G+A S LT+
Sbjct: 182 SNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 849 KFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELK 888
K + L AV + V C G P PT++W K+G+E K
Sbjct: 23 KMEKRLHAVPA-ANTVKFRCPAGGNPMPTMRWLKNGKEFK 61
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 22/160 (13%)
Query: 782 WFRDDQQV-VESDNVKILKETLGVCHLKIHALEVADQAEWKC-IATNDFGQSITSCFLKL 839
W ++ V + D + + +T G +L I +E +D+ + C +++ +S+ S F+ L
Sbjct: 44 WLLNEFPVFITMDKRRFVSQTNG--NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPL 101
Query: 840 -NVPKHYKKP---KFLEELKAVLS-EGGAVNLECKVIGVPQPTLKWFKDGRELK------ 888
+P+ KP + + K V + G V LEC +G P P ++W K +
Sbjct: 102 IPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIS 161
Query: 889 -AGDIHKI--ISGEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
+G + KI I ED GIY CEA N G A +
Sbjct: 162 TSGAVLKIFNIQLEDE----GIYECEAENIRGKDKHQARI 197
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 26/198 (13%)
Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPW--PRSI---YWYNKEGVVEASDKYHIMADGL 605
P +E V+ K G +L C PP+ P + + N+ V DK ++
Sbjct: 9 PFPPEERPEVRVKEGKGMVLLCD---PPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTN 65
Query: 606 GGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL-MPKNYRKPR---FVESLKAV 661
G ++ I +EA D G + C +S S K + ++ ++ +P+ KP V K V
Sbjct: 66 G--NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDV 123
Query: 662 MTDDGL-VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCC 710
G V+ EC +G P P ++W K E + P T + L G Y C
Sbjct: 124 YALMGQNVTLECFALGNPVPDIRWRKVLEPM-PSTAEISTSGAVLKIFNIQLEDEGIYEC 182
Query: 711 VAKNVMGKAESSTQLTIE 728
A+N+ GK + ++ ++
Sbjct: 183 EAENIRGKDKHQARIYVQ 200
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 73/193 (37%), Gaps = 29/193 (15%)
Query: 358 DIAVKVGTRARLLVE--IRSPTEIKIHWYRNDRKL---EENKIYRTQHDGNFYFIDLSSV 412
++ VK G LL + P ++ W N+ + + + + +Q +GN Y +++V
Sbjct: 17 EVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLY---IANV 73
Query: 413 SLFDSGRWTCLAENAVGRSHCSCELSVLVP------KAYKAPFFTKELEAILTEQGTVSL 466
D G ++C + + L+P K Y A + + V+L
Sbjct: 74 EASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTL 133
Query: 467 ECKVMGIPTPQLIWYKDNKKIKAG----------DIFALTANPKDPSSLGTYTCEAVNCM 516
EC +G P P + W K + + + IF + + G Y CEA N
Sbjct: 134 ECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDE-----GIYECEAENIR 188
Query: 517 GAAFSTSRVIARG 529
G +R+ +
Sbjct: 189 GKDKHQARIYVQA 201
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 107/278 (38%), Gaps = 50/278 (17%)
Query: 649 YRKPRFVESLKAVMTDDGLVSFECKVVGFPTPT-LQWFKDNEELKPGDVYQLT-GTSSL- 705
+ P FVE L +T + V +CKV T + W+KD E+ + + G +L
Sbjct: 5 FTGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLL 64
Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLL--TNNKAPKFIEG 754
G Y + K+ GK +S +L E + + E K + L T+ K EG
Sbjct: 65 ITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEG 124
Query: 755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKI----- 809
++ ++ + KV+W + + SD VK GV +I
Sbjct: 125 IQL----------YSFVTYYVEDLKVNWSHNGSAIRYSDRVKT-----GVTGEQIWLQIN 169
Query: 810 ---------HALEVADQAEWKCIATNDFGQSITSCF-----LKLNVPKHYKKPKFLEELK 855
+ +E+ D + GQ+ + LK + + L L
Sbjct: 170 EPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLP 229
Query: 856 AVLS--EGGAVNLECKVIGVPQPTLKWFKDGRELKAGD 891
V++ EG A+NL C V G P P + W K+ + L + D
Sbjct: 230 DVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDD 267
Score = 37.0 bits (84), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 54/270 (20%), Positives = 101/270 (37%), Gaps = 32/270 (11%)
Query: 197 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKV 256
+DG L I + D G Y V ++ G ++ +L E AF + ++ K+
Sbjct: 57 KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE-------AFKELMMEVCKKI 109
Query: 257 GTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE----LNI 312
A L +I+S E + + H R+ + G T L I
Sbjct: 110 ALSATDL-KIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQI 168
Query: 313 RRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVE 372
+D G+Y + + +LS ++ +A A +RL A+ RAR+L
Sbjct: 169 NEPTPNDKGKYVMELFDGKTGHQKTVDLSGQA-YDEAYAEFQRLKQAAIAEKNRARVLGG 227
Query: 373 IRSPTEIK------------------IHWYRNDRKLEENKIYRTQHD-GNFYFIDLSSVS 413
+ I+ + W +N++ L + + + G + ++ VS
Sbjct: 228 LPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVS 287
Query: 414 LFDSGRWTCLAENAVGRSHCSCELSVLVPK 443
DSG++ + +N G +SV +P+
Sbjct: 288 TADSGKYGLVVKNKYGSETSDFTVSVFIPE 317
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 33/162 (20%)
Query: 845 YKKPKFLEELKAVLSEGGAVNLECKVIGVPQPT-LKWFKDGRELKAGDIHKIISGEDGTC 903
+ P F+E L ++ V L+CKV + + T + W+KD RE+ + H +DG C
Sbjct: 5 FTGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF---KDGIC 61
Query: 904 CL----------GIYTCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALIV---KDPS 950
L GIY + G +DKS+++ +E K L++ K +
Sbjct: 62 TLLITEFSKKDAGIYEVILKDDRG-----------KDKSRLKLVDEAFKELMMEVCKKIA 110
Query: 951 LST--IQEEGTSE---IYDTPMASIEEREISFSFDGKEVSVS 987
LS ++ + T+E +Y +E+ ++++S +G + S
Sbjct: 111 LSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS 152
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/78 (19%), Positives = 35/78 (44%)
Query: 766 FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT 825
T V P P+VSW ++++ + D+ + E + I+ + AD ++ +
Sbjct: 240 LNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVK 299
Query: 826 NDFGQSITSCFLKLNVPK 843
N +G + + + +P+
Sbjct: 300 NKYGSETSDFTVSVFIPE 317
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 100/270 (37%), Gaps = 30/270 (11%)
Query: 90 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKV 149
+DG L I + D G Y V ++ G ++ +L E AF + ++ K+
Sbjct: 57 KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE-------AFKELMMEVCKKI 109
Query: 150 GTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE----LNI 205
A L +I+S E + + H R+ + G T L I
Sbjct: 110 ALSATDL-KIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQI 168
Query: 206 RRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVE 265
+D G+Y + + +LS ++ +A A +RL A+ RAR+L
Sbjct: 169 NEPTPNDKGKYVMELFDGKTGHQKTVDLSGQA-YDEAYAEFQRLKQAAIAEKNRARVLGG 227
Query: 266 IRSPTEIKCQFDLNNTIPFSFRAQGDHP---IFGNRFRAINRD---------GRTE-LNI 312
+ I+ LN T GD P + +A+ D GRT I
Sbjct: 228 LPDVVTIQEGKALNLTC----NVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTI 283
Query: 313 RRVRRDDGGRYSVTASNESGYSTAKFELSV 342
V D G+Y + N+ G T+ F +SV
Sbjct: 284 NGVSTADSGKYGLVVKNKYGSETSDFTVSV 313
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 445 YKAPFFTKELEAILTEQGTVSLECKVMGIPT-PQLIWYKDNKKI 487
+ P F + L +T + V L+CKV I ++WYKD ++I
Sbjct: 5 FTGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREI 48
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 8/107 (7%)
Query: 331 SGYSTAKFELSVESQVPDA--------PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIH 382
S YS+ + E + DA P FI + + V G A + + + +
Sbjct: 456 SNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVT 515
Query: 383 WYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG 429
W+++DR+L+++ Y +++GN Y + ++ V D G +T A+N+ G
Sbjct: 516 WHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYG 562
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 847 KPKFL-EELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAG-DIHKIISGEDGTCC 904
+P+F+ + + EG + N C+VI P + W KD RELK K +G D
Sbjct: 482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 541
Query: 905 L--------GIYTCEAHNCMGT 918
+ G YT A N GT
Sbjct: 542 INRVKGDDKGEYTVRAKNSYGT 563
Score = 36.2 bits (82), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH-L 807
P+FI + + F +V S P V+W +DD+++ +S VK +K G + L
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQS--VKYMKRYNGNDYGL 540
Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLKL 839
I+ ++ D+ E+ A N +G FL +
Sbjct: 541 TINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 14/91 (15%)
Query: 651 KPRFVESLKAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKP---------GDVYQLT 700
+PRF+ +G +F C+V+ P + W KD+ ELK G+ Y LT
Sbjct: 482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 541
Query: 701 ----GTSSLGSYCCVAKNVMGKAESSTQLTI 727
G Y AKN G E L +
Sbjct: 542 INRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 449 FFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA---------GDIFALTANP 499
F K + E + + C+V+ P + W+KD++++K G+ + LT N
Sbjct: 485 FIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINR 544
Query: 500 KDPSSLGTYTCEAVNCMGA 518
G YT A N G
Sbjct: 545 VKGDDKGEYTVRAKNSYGT 563
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSI 610
P FI + + G SA C+V+ P + W+ + ++ S KY +G Y +
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASS-PPVVTWHKDDRELKQSVKYMKRYNG-NDYGL 540
Query: 611 EINYLEAVDDGEWKCVATSSSGVKQ 635
IN ++ D GE+ A +S G K+
Sbjct: 541 TINRVKGDDKGEYTVRAKNSYGTKE 565
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKI--KAGDIFA-----LTAN 498
AP T LE T G ++ + C G P PQ++W+KDN+ + +G + LT
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIR 69
Query: 499 PKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQ 531
G YTC+A + +G A + I G Q
Sbjct: 70 RVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ 102
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
AP L++ ++ E + + S +P P++ WF+D++ +VE + +LK+ G +L
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI-VLKD--GNRNL 66
Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFL 837
I + D+ + C A + G + F
Sbjct: 67 TIRRVRKEDEGLYTCQACSVLGCAKVEAFF 96
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 2 GIPTPQLIWYKDNKKI--KAGDIFA-----LTANPKDPSSLGTYTCEAVNCMGAAFSTSR 54
G P PQ++W+KDN+ + +G + LT G YTC+A + +G A +
Sbjct: 36 GNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAF 95
Query: 55 VIARGQQ 61
I G Q
Sbjct: 96 FIIEGAQ 102
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 17/90 (18%)
Query: 859 SEGGAVNLECKVIGVPQPTLKWFKD--------GRELKAGDIH---KIISGEDGTCCLGI 907
S G ++ + C G P P + WFKD G LK G+ + + + ED G+
Sbjct: 23 SIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDE----GL 78
Query: 908 YTCEAHNCMGTTSSSAALL--GFEDKSQIE 935
YTC+A + +G A + G ++K+ +E
Sbjct: 79 YTCQACSVLGCAKVEAFFIIEGAQEKTNLE 108
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEEL-KPGDVYQLTGTSSL----------GSYCCVAKNVM 716
+ C G P P + WFKDNE L + + G +L G Y C A +V+
Sbjct: 28 IEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVL 87
Query: 717 GKAESSTQLTIE 728
G A+ IE
Sbjct: 88 GCAKVEAFFIIE 99
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 80/205 (39%), Gaps = 48/205 (23%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD--------------VYQLTGTSSLGSYCCVAK 713
V F C G P PT++W K+ +E K + + S G+Y CV +
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 96
Query: 714 NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT-VNEEFKFTVQV 772
N G + L + + H P GL + +T V + +F +V
Sbjct: 97 NEYGSINHTYHLDVVERSPH--------------RPILQAGLPANASTVVGGDVEFVCKV 142
Query: 773 SISPEPKVSWFRDDQQVVESDN----------VKILKET-LGVCHLKIHAL---EVADQA 818
+P + W + VE + +K+LK + + + ++ AL AD
Sbjct: 143 YSDAQPHIQWIKH----VEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAG 198
Query: 819 EWKCIATNDFGQSITSCFLKLNVPK 843
E+ C +N GQ+ S +L + +PK
Sbjct: 199 EYICKVSNYIGQANQSAWLTV-LPK 222
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 3/118 (2%)
Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
KF +P P + W ++ ++ + + K L + ++ +D+ + C+ N
Sbjct: 38 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 97
Query: 827 DFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSE--GGAVNLECKVIGVPQPTLKWFK 882
++G SI + V + +P L A S GG V CKV QP ++W K
Sbjct: 98 EYG-SINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIK 154
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 18/164 (10%)
Query: 304 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRL-HDIAVK 362
R+ L + V D G Y+ NE G + L V + P P L + +
Sbjct: 72 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTV 131
Query: 363 VGTRARLLVEIRSPTEIKIHWYRNDRK---------LEENKIYRTQHDG----NFYFIDL 409
VG + ++ S + I W ++ K L K+ + H G N + L
Sbjct: 132 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLK--HSGINSSNAEVLAL 189
Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKE 453
+V+ D+G + C N +G+++ S L+VL PK +AP KE
Sbjct: 190 FNVTEADAGEYICKVSNYIGQANQSAWLTVL-PKQ-QAPGREKE 231
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 12/113 (10%)
Query: 381 IHWYRNDRKL-EENKI----YRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC 435
+ W +N ++ +E++I R QH + + + SV D G +TC+ EN G + +
Sbjct: 51 MRWLKNGKEFKQEHRIGGYKVRNQH----WSLIMESVVPSDKGNYTCVVENEYGSINHTY 106
Query: 436 ELSVLVPKAYKAPFFTKELEAILTE--QGTVSLECKVMGIPTPQLIWYKDNKK 486
L V V ++ P L A + G V CKV P + W K +K
Sbjct: 107 HLDV-VERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEK 158
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 58/162 (35%), Gaps = 33/162 (20%)
Query: 446 KAPFFT------KELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA---------- 489
+AP++T K L A+ TV C G P P + W K+ K+ K
Sbjct: 14 RAPYWTNTEKMEKRLHAVPAFN-TVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 72
Query: 490 GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSR--VIARGQQSFLDNDDVPFNSLMPP 547
++L PS G YTC N G+ T V+ R + +P N+
Sbjct: 73 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVV 132
Query: 548 G--------------PAPIFIKEVENVKAKIGTSAILECQVL 575
G P +IK VE +K G + +VL
Sbjct: 133 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVL 174
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 57/158 (36%), Gaps = 39/158 (24%)
Query: 605 LGGYSIEINY----LEAV---DDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVES 657
+GGY + + +E+V D G + CV + G + Y ++ ++ +P
Sbjct: 66 IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG--SINHTYHLDVVERSPHRPILQAG 123
Query: 658 LKAVMTD--DGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL---------- 705
L A + G V F CKV P +QW K E K G Y G L
Sbjct: 124 LPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVE--KNGSKYGPDGLPYLKVLKHSGINS 181
Query: 706 ----------------GSYCCVAKNVMGKAESSTQLTI 727
G Y C N +G+A S LT+
Sbjct: 182 SNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 864 VNLECKVIGVPQPTLKWFKDGRELK 888
V C G P PT++W K+G+E K
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEFK 61
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 8/107 (7%)
Query: 331 SGYSTAKFELSVESQVPDA--------PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIH 382
S YS+ + E + DA P FI + + V G A + + + +
Sbjct: 350 SNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVT 409
Query: 383 WYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG 429
W+++DR+L+++ Y +++GN Y + ++ V D G +T A+N+ G
Sbjct: 410 WHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYG 456
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH-L 807
P+FI + + F +V S P V+W +DD+++ +S VK +K G + L
Sbjct: 377 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQS--VKYMKRYNGNDYGL 434
Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKF--LEELKAVLS 859
I+ ++ D+ E+ A N +G F LNV +H + KF LE +K S
Sbjct: 435 TINRVKGDDKGEYTVRAKNSYGTKEEIVF--LNVTRHSEPLKFEPLEPMKKAPS 486
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 847 KPKFL-EELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAG-DIHKIISGEDGTCC 904
+P+F+ + + EG + N C+VI P + W KD RELK K +G D
Sbjct: 376 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 435
Query: 905 L--------GIYTCEAHNCMGT 918
+ G YT A N GT
Sbjct: 436 INRVKGDDKGEYTVRAKNSYGT 457
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 14/91 (15%)
Query: 651 KPRFVESLKAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKP---------GDVYQLT 700
+PRF+ +G +F C+V+ P + W KD+ ELK G+ Y LT
Sbjct: 376 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 435
Query: 701 ----GTSSLGSYCCVAKNVMGKAESSTQLTI 727
G Y AKN G E L +
Sbjct: 436 INRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 466
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 449 FFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA---------GDIFALTANP 499
F K + E + + C+V+ P + W+KD++++K G+ + LT N
Sbjct: 379 FIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINR 438
Query: 500 KDPSSLGTYTCEAVNCMGA 518
G YT A N G
Sbjct: 439 VKGDDKGEYTVRAKNSYGT 457
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSI 610
P FI + + G SA C+V+ P + W+ + ++ S KY +G Y +
Sbjct: 377 PRFIVKPYGTEVGEGQSANFYCRVIASS-PPVVTWHKDDRELKQSVKYMKRYNG-NDYGL 434
Query: 611 EINYLEAVDDGEWKCVATSSSGVKQ 635
IN ++ D GE+ A +S G K+
Sbjct: 435 TINRVKGDDKGEYTVRAKNSYGTKE 459
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 11/163 (6%)
Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETLGVCHLKIHALEVADQAEWKCIAT 825
K V EP + W +D V D + I + E + L + ++E +D + C
Sbjct: 21 KLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWC-QV 79
Query: 826 NDFGQSITSCFLKLNV---PKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQP-TLKWF 881
D G++ S + L V P +PK L + L C+ +G P+P T+ W+
Sbjct: 80 EDGGETEISQPVWLTVEGVPFFTVEPKDL-----AVPPNAPFQLSCEAVGPPEPVTIVWW 134
Query: 882 KDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAA 924
+ ++ + G ++CEAHN G SS A
Sbjct: 135 RGTTKIGGPAPSPSVLNVTGVTQSTXFSCEAHNLKGLASSRTA 177
Score = 34.3 bits (77), Expect = 0.40, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 23/123 (18%)
Query: 854 LKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAH 913
+K +S+G V L C V G +P ++W KDG ++ D L I E H
Sbjct: 10 VKLTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQ------------LYIPVSEQH 57
Query: 914 NCMGTTSSSAALLGFEDKSQIEKAEEGKKALIVKDPSLSTIQEEGTSEIYDTPMASIEER 973
+GF +E+++ G+ V+D + I + + P ++E +
Sbjct: 58 -----------WIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPK 106
Query: 974 EIS 976
+++
Sbjct: 107 DLA 109
Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats.
Identities = 31/134 (23%), Positives = 47/134 (35%), Gaps = 30/134 (22%)
Query: 464 VSLECKVMGIPTPQLIWYKDNKKIKAGD-----------IFALTANPKDPSSLGTYTCEA 512
V L C V G P + W KD ++ D I L+ + S G Y C+
Sbjct: 20 VKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQV 79
Query: 513 VNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILEC 572
+ S Q +L + VPF F E +++ L C
Sbjct: 80 EDGGETEIS--------QPVWLTVEGVPF-----------FTVEPKDLAVPPNAPFQLSC 120
Query: 573 QVLVPPWPRSIYWY 586
+ + PP P +I W+
Sbjct: 121 EAVGPPEPVTIVWW 134
>pdb|2Y23|A Chain A, Crystal Structure Of The Myomesin Domains My9-My11
Length = 312
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 88/220 (40%), Gaps = 34/220 (15%)
Query: 298 RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKF----------ELSVESQVP 347
R ++ +T++ + + DD G YS ++ G +++ LS E + P
Sbjct: 48 RLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFP 107
Query: 348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
P +I K R + E S K+++ N++++ E Y+ D N I
Sbjct: 108 TVPVKSELAVEILEKGQVRFWMQAEKLSGN-AKVNYIFNEKEIFEGPKYKMHIDRNTGII 166
Query: 408 DLSSVSLFDS--GRWTCLAENAVGRSHCSCELSVLVPKAYK-----------------AP 448
++ L D G +T ++ +H + VLV +K P
Sbjct: 167 EMFMEKLQDEDEGTYTFQLQDGKATNHSTV---VLVGDVFKKLQKEAEFQRQEWIRKQGP 223
Query: 449 FFTKELEAILTEQGTVSLECKVMGIPTP-QLIWYKDNKKI 487
F + L +T + V L+CKV I ++WYKD ++I
Sbjct: 224 HFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREI 263
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 117/272 (43%), Gaps = 44/272 (16%)
Query: 668 VSFECKVVGFPTPTLQWFKD--NEELKP-------GDVYQLT----GTSSLGSYCCVAKN 714
++FEC + P W KD + E P G+ ++T G LG Y C +
Sbjct: 21 LNFECDKMT-PKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTD 79
Query: 715 VMGKAESSTQLTIEDIRNHLSEEDKLLLLTN-NKAPKF-IEGLKSCQATVNEEFKFTVQV 772
G A SS + E+++ +LL L++ +K P ++ + + + +F +Q
Sbjct: 80 TDGIA-SSYLIDEEELK-------RLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQA 131
Query: 773 S-ISPEPKVSWFRDDQQVVESDNVKI-LKETLGVCHLKIHALEVADQAEWKCIATNDFGQ 830
+S KV++ +++++ E K+ + G+ + + L+ D+ + +
Sbjct: 132 EKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKAT 191
Query: 831 SITSCFLKLNVPKHYKK--------------PKFLEELKAVLSEGGAVNLECKVIGVPQP 876
+ ++ L +V K +K P F+E L ++ V L+CKV + +
Sbjct: 192 NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKE 251
Query: 877 T-LKWFKDGRELKAGDIHKIISGEDGTCCLGI 907
T + W+KD RE+ + H +DG C L I
Sbjct: 252 THIVWYKDEREISVDEKHDF---KDGICTLLI 280
>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component
pdb|3CHN|S Chain S, Solution Structure Of Human Secretory Iga1
pdb|3CM9|S Chain S, Solution Structure Of Human Siga2
Length = 585
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 115/300 (38%), Gaps = 47/300 (15%)
Query: 91 DGRTELNIRRVRRDDGGRYSVTAS-NESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKV 149
+G +NI ++ +DD GRY N G S F++S+E V P L+D V
Sbjct: 72 NGTFVVNIAQLSQDDSGRYKCGLGINSRGLS---FDVSLE--VSQGPGL---LNDTKVYT 123
Query: 150 GTRARLLVEIRSPTEIKCQFDLNNTIPFS--FRAQGDHPIF---GNRFRAINRDGRTELN 204
V++ I C F N ++ G +P+ + + N GR L+
Sbjct: 124 -------VDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLD 176
Query: 205 IR------------RVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDI 252
I+ ++R D G+Y A ++S + +L V P+ D+
Sbjct: 177 IQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPEL-----VYEDL 231
Query: 253 AVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDH-PIFGNR--FRAINRDGRTE 309
V L E+ + + C+ G P F R ++DG
Sbjct: 232 RGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFS 291
Query: 310 LNIRRVRRDDGGRYSVTASNES----GYSTAKFELSV--ESQVPDAPAFIRRLHDIAVKV 363
+ I +R++D GRY A ++ G ++L V ES +P +P ++ + +V V
Sbjct: 292 VVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAV 351
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 60 QQSFLDNDDVPFNRAQGDHPIFGNR--FRAINRDGRTELNIRRVRRDDGGRYSVTASNES 117
+QS +N DV N P F R ++DG + I +R++D GRY A ++
Sbjct: 254 RQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDG 313
Query: 118 ----GYSTAKFELSV--ESQVPDAPAFIRRLHDIAVKV 149
G ++L V ES +P +P ++ + +V V
Sbjct: 314 QLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAV 351
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 13/93 (13%)
Query: 841 VPK--HYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGD-----IH 893
VP+ H PK + EG VN+ C+V P T+ WF+DG+ L + + I+
Sbjct: 11 VPRGSHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIY 70
Query: 894 KIISGE------DGTCCLGIYTCEAHNCMGTTS 920
S D G Y C A N +G S
Sbjct: 71 NTPSASYLEVTPDSENDFGNYNCTAVNRIGQES 103
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESD--NVKILKETLGVC 805
APK ++G + + T +V P +SWFRD Q + S+ N+KI T
Sbjct: 19 APK-LQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYN-TPSAS 76
Query: 806 HLKIHALEVADQAEWKCIATNDFGQ 830
+L++ D + C A N GQ
Sbjct: 77 YLEVTPDSENDFGNYNCTAVNRIGQ 101
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 13/93 (13%)
Query: 438 SVLVPKA--YKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD---- 491
S LVP+ AP + E V++ C+V P+ + W++D + + + +
Sbjct: 8 SALVPRGSHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNI 67
Query: 492 -IF------ALTANPKDPSSLGTYTCEAVNCMG 517
I+ L P + G Y C AVN +G
Sbjct: 68 KIYNTPSASYLEVTPDSENDFGNYNCTAVNRIG 100
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 23/93 (24%)
Query: 642 HVLMPKNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGD----- 695
H+ PK ++ AV T +G V+ C+V +P+ T+ WF+D + L +
Sbjct: 16 HMYAPK-------LQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIK 68
Query: 696 VYQLTGTSSL----------GSYCCVAKNVMGK 718
+Y S L G+Y C A N +G+
Sbjct: 69 IYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQ 101
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 21/91 (23%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELK-----PGDVYQLTGTSSL 705
PR VE ++ G + CK G PTPT++W+K E ++ P L + SL
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 706 ---------------GSYCCVAKNVMGKAES 721
G Y CVA+N +G+A S
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVS 100
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 16/86 (18%)
Query: 857 VLSEGGAVNLECKVIGVPQPTLKWFKDGRE--------------LKAGDIH--KIISGED 900
++S+G L CK G P PT++W+K G L +G + +I+ G
Sbjct: 20 IVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRK 79
Query: 901 GTCCLGIYTCEAHNCMGTTSSSAALL 926
G+Y C A N +G S A L
Sbjct: 80 SRPDEGVYVCVARNYLGEAVSHDASL 105
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 16/81 (19%)
Query: 457 ILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK--------------AGDIFAL--TANPK 500
I+++ +L CK G PTP + WYK ++++ +G +F L K
Sbjct: 20 IVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRK 79
Query: 501 DPSSLGTYTCEAVNCMGAAFS 521
G Y C A N +G A S
Sbjct: 80 SRPDEGVYVCVARNYLGEAVS 100
>pdb|2EDW|A Chain A, Solution Structure Of The I-Set Domain (3537-3630) Of
Human Obscurin
Length = 107
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 548 GPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGG 607
GPA FI++V+N +A+ G +A+L+C+ L P + W + D+Y + DG
Sbjct: 7 GPAR-FIEDVKNQEAREGATAVLQCE-LNSAAP--VEWRKGSETLRDGDRYSLRQDGT-K 61
Query: 608 YSIEINYLEAVDDGEWKCV 626
++I L D GE+ CV
Sbjct: 62 CELQIRGLAMADTGEYSCV 80
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 750 KFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKI 809
+FIE +K+ +A E +Q ++ V W + + + + D L++ C L+I
Sbjct: 10 RFIEDVKNQEA--REGATAVLQCELNSAAPVEWRKGSETLRDGDRYS-LRQDGTKCELQI 66
Query: 810 HALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
L +AD E+ C+ GQ TS L +
Sbjct: 67 RGLAMADTGEYSCVC----GQERTSAMLTVRA 94
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 349 APA-FIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
PA FI + + + G A L E+ S + W + L + Y + DG +
Sbjct: 7 GPARFIEDVKNQEAREGATAVLQCELNSAA--PVEWRKGSETLRDGDRYSLRQDGTKCEL 64
Query: 408 DLSSVSLFDSGRWTCL 423
+ +++ D+G ++C+
Sbjct: 65 QIRGLAMADTGEYSCV 80
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQV-VESDNVKILKETLGVC 805
+AP FI +S + + K Q+S P PK+ W R+++ V +D + + ++ G
Sbjct: 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV 73
Query: 806 HLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
L I + D + A N+ G +T+C +L+V
Sbjct: 74 TLLIKDVNKKDAGWYTVSAVNEAG--VTTCNTRLDV 107
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
AP+FI + ++ K G S LECQ+ P P+ + N E V +D+ + D G +
Sbjct: 15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVT 74
Query: 610 IEINYLEAVDDGEWKCVATSSSGV 633
+ I + D G + A + +GV
Sbjct: 75 LLIKDVNKKDAGWYTVSAVNEAGV 98
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 20/105 (19%)
Query: 446 KAPFFT-KELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK------------AGDI 492
+AP F K + E +V LEC++ IP P+L W ++N+ ++ G +
Sbjct: 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV 73
Query: 493 FALT--ANPKDPSSLGTYTCEAVNCMGAAFSTSR--VIARGQQSF 533
L N KD G YT AVN G +R V AR Q+
Sbjct: 74 TLLIKDVNKKD---AGWYTVSAVNEAGVTTCNTRLDVTARPNQTL 115
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN--KIYRTQHDGNFYF 406
AP FI + V G +L +I + K+ W RN+ ++ N +I Q +
Sbjct: 15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVT 74
Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+ + V+ D+G +T A N G + C+ L V
Sbjct: 75 LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDV 107
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 92 GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 131
GR L I+ V + D G Y+V+A NE+G +T L V ++
Sbjct: 71 GRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 199 GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 238
GR L I+ V + D G Y+V+A NE+G +T L V ++
Sbjct: 71 GRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 306 GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
GR L I+ V + D G Y+V+A NE+G +T L V ++
Sbjct: 71 GRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 16/94 (17%)
Query: 846 KKPKFL--EELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTC 903
+ P F+ + K VL EG +V LEC++ +P P L W K E+ + +I +D T
Sbjct: 14 RAPMFIYKPQSKKVL-EGDSVKLECQISAIPPPKLFW-KRNNEMVQFNTDRISLYQDNTG 71
Query: 904 CL------------GIYTCEAHNCMGTTSSSAAL 925
+ G YT A N G T+ + L
Sbjct: 72 RVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRL 105
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 68/166 (40%), Gaps = 14/166 (8%)
Query: 440 LVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANP 499
LVP+ K E +A+L Q V L C+ G P Q W+K NK+I G+ L N
Sbjct: 14 LVPRGSKITV-NPESKAVLAGQ-FVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNA 71
Query: 500 KDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVP--FNSLMPPGPAPIFIKEV 557
G Y C N FS Q S LD D+P F + V
Sbjct: 72 VHVKDAGFYVCRVNNNFTFEFS--------QWSQLDVCDIPESFQRSVDGVSESKLQICV 123
Query: 558 ENVKAKI--GTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIM 601
E K+ G++ +L+C + P P ++ N+ + + K +++
Sbjct: 124 EPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMV 169
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 853 ELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEA 912
E KAVL+ G V L C+ G P +WFK +E+ G+ ++I G Y C
Sbjct: 26 ESKAVLA-GQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRV 84
Query: 913 HN 914
+N
Sbjct: 85 NN 86
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 52/142 (36%), Gaps = 27/142 (19%)
Query: 659 KAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD----VYQLTGTSSLGSYCC-VAK 713
KAV+ V C+ G P QWFK N+E+ G+ ++ G Y C V
Sbjct: 28 KAVLAGQ-FVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNN 86
Query: 714 NVMGKAESSTQLTIEDIRNHLS------EEDKLLLLTNNKAPKFIEG---LKSCQATVNE 764
N + +QL + DI E KL + + K + G + C A
Sbjct: 87 NFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVG-- 144
Query: 765 EFKFTVQVSISPEPKVSWFRDD 786
SP P WF+++
Sbjct: 145 ----------SPIPHYQWFKNE 156
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 10/75 (13%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQ 61
G P Q W+K NK+I G+ L N G Y C N FS Q
Sbjct: 44 GHPFVQYQWFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFS--------QW 95
Query: 62 SFLDNDDVP--FNRA 74
S LD D+P F R+
Sbjct: 96 SQLDVCDIPESFQRS 110
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
Query: 655 VESLKAVMTDDGLVSFECKVVGFPTPTLQWFKD----NEELKPGDVYQLTGTSSLGSYCC 710
VE + + +C VG P P QWFK+ E K + G+Y C
Sbjct: 123 VEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWC 182
Query: 711 VAKNVMGKAESSTQLTIEDIRNHLSEED 738
N +S I D N+L D
Sbjct: 183 HVYNDRDSQDSKKVEIIIDELNNLGHPD 210
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 81/207 (39%), Gaps = 52/207 (25%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTG----------------TSSLGSYCCV 711
V F C G P PT +W K+ +E K +++ G S G+Y CV
Sbjct: 36 VKFRCPAGGNPXPTXRWLKNGKEFK--QEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCV 93
Query: 712 AKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT-VNEEFKFTV 770
+N G + L + + H P GL + +T V + +F
Sbjct: 94 VENEYGSINHTYHLDVVERSPH--------------RPILQAGLPANASTVVGGDVEFVC 139
Query: 771 QVSISPEPKVSWFRDDQQVVESDN----------VKILKET-LGVCHLKIHAL---EVAD 816
+V +P + W + VE + +K+LK + + + ++ AL AD
Sbjct: 140 KVYSDAQPHIQWIKH----VEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEAD 195
Query: 817 QAEWKCIATNDFGQSITSCFLKLNVPK 843
E+ C +N GQ+ S +L + +PK
Sbjct: 196 AGEYICKVSNYIGQANQSAWLTV-LPK 221
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 3/118 (2%)
Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
KF +P P W ++ ++ + + K L ++ +D+ + C+ N
Sbjct: 37 KFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVEN 96
Query: 827 DFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSE--GGAVNLECKVIGVPQPTLKWFK 882
++G SI + V + +P L A S GG V CKV QP ++W K
Sbjct: 97 EYG-SINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIK 153
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 67/164 (40%), Gaps = 18/164 (10%)
Query: 304 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRL-HDIAVK 362
R+ L V D G Y+ NE G + L V + P P L + +
Sbjct: 71 RNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTV 130
Query: 363 VGTRARLLVEIRSPTEIKIHWYRNDRK---------LEENKIYRTQHDG----NFYFIDL 409
VG + ++ S + I W ++ K L K+ + H G N + L
Sbjct: 131 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLK--HSGINSSNAEVLAL 188
Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKE 453
+V+ D+G + C N +G+++ S L+VL PK +AP KE
Sbjct: 189 FNVTEADAGEYICKVSNYIGQANQSAWLTVL-PKQ-QAPGREKE 230
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 57/162 (35%), Gaps = 33/162 (20%)
Query: 446 KAPFFT------KELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA---------- 489
+AP++T K L A+ TV C G P P W K+ K+ K
Sbjct: 13 RAPYWTNTEKXEKRLHAVPAAN-TVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVR 71
Query: 490 GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSR--VIARGQQSFLDNDDVPFNSLMPP 547
++L PS G YTC N G+ T V+ R + +P N+
Sbjct: 72 NQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVV 131
Query: 548 G--------------PAPIFIKEVENVKAKIGTSAILECQVL 575
G P +IK VE +K G + +VL
Sbjct: 132 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVL 173
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 54/158 (34%), Gaps = 39/158 (24%)
Query: 605 LGGYSIEINYLEAV-------DDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVES 657
+GGY + + + D G + CV + G + Y ++ ++ +P
Sbjct: 65 IGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYG--SINHTYHLDVVERSPHRPILQAG 122
Query: 658 LKAVMTD--DGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL---------- 705
L A + G V F CKV P +QW K E K G Y G L
Sbjct: 123 LPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVE--KNGSKYGPDGLPYLKVLKHSGINS 180
Query: 706 ----------------GSYCCVAKNVMGKAESSTQLTI 727
G Y C N +G+A S LT+
Sbjct: 181 SNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 218
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 12/111 (10%)
Query: 383 WYRNDRKL-EENKI----YRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCEL 437
W +N ++ +E++I R QH + + SV D G +TC+ EN G + + L
Sbjct: 52 WLKNGKEFKQEHRIGGYKVRNQH----WSLIXESVVPSDKGNYTCVVENEYGSINHTYHL 107
Query: 438 SVLVPKAYKAPFFTKELEAILTE--QGTVSLECKVMGIPTPQLIWYKDNKK 486
V V ++ P L A + G V CKV P + W K +K
Sbjct: 108 DV-VERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEK 157
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 864 VNLECKVIGVPQPTLKWFKDGRELK 888
V C G P PT +W K+G+E K
Sbjct: 36 VKFRCPAGGNPXPTXRWLKNGKEFK 60
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLG-VCHL 807
P F L ++ +++V P+P VSW R+ +Q V D + +E G +C L
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRN-RQPVRPDQRRFAEEAEGGLCRL 64
Query: 808 KIHALEVADQAEWKCIATNDFG 829
+I A E D + C A N++G
Sbjct: 65 RILAAERGDAGFYTCKAVNEYG 86
Score = 33.1 bits (74), Expect = 0.90, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLE-ENKIYRTQHDGNFYFID 408
P F L D +V+ G + + ++ + + W RN + + + + + + +G +
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLR 65
Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+ + D+G +TC A N G C L V
Sbjct: 66 ILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 446 KAP--FFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA----------GDIF 493
KAP F ++ + E V + +V G P P + W ++ + ++ G +
Sbjct: 3 KAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLC 62
Query: 494 ALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQ 530
L + G YTC+AVN GA +R+ RG+
Sbjct: 63 RLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 860 EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYT 909
EG V + +V G P+P + W ++ + ++ E G C L G YT
Sbjct: 19 EGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYT 78
Query: 910 CEAHNCMGTTSSSAAL 925
C+A N G A L
Sbjct: 79 CKAVNEYGARQCEARL 94
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 755 LKSCQATVNEEFKFTVQVSIS------PEPKVSWFRDDQQVVESDNVKILKETLGVCHLK 808
+++ Q+T+N + V+++ PEP ++W +D + + + DN + L
Sbjct: 14 VRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELI 73
Query: 809 IHALEVADQAEWKCIATNDFGQSITSCFLKL 839
I ++ +D+AE+ CIA N G+ + LK+
Sbjct: 74 IKKVDKSDEAEYICIAENKAGEQDATIHLKV 104
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 14/74 (18%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD--------------VYQLTGTSSLGSYCCVAK 713
V+ C GFP PT+ W KD E ++ D + + S Y C+A+
Sbjct: 31 VTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSDEAEYICIAE 90
Query: 714 NVMGKAESSTQLTI 727
N G+ +++ L +
Sbjct: 91 NKAGEQDATIHLKV 104
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 839 LNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGD 891
+NVP + + A LS+ +V L C G P+PT+ W KDG ++ D
Sbjct: 8 VNVPPSVRARQSTMNATANLSQ--SVTLACDADGFPEPTMTWTKDGEPIEQED 58
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 436 ELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD 491
++ V VP + +A T A L++ +V+L C G P P + W KD + I+ D
Sbjct: 5 QVIVNVPPSVRARQSTMNATANLSQ--SVTLACDADGFPEPTMTWTKDGEPIEQED 58
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 779 KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDF-GQ--SIT-S 834
K+ W++D +++ DN K L G HL +H + + D ++C+ T GQ +IT S
Sbjct: 156 KIQWYKD-SLLLDKDNEKFLS-VRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRS 213
Query: 835 CFLKLNVPKHYKKPKFLEELKAV-LSEGGAVNLECKVI---GVPQPTLKWFKDGRELKAG 890
L++ K P + LK + S G + + CKV G P T+ W+ A
Sbjct: 214 IELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWW------TAN 267
Query: 891 DIH 893
D H
Sbjct: 268 DTH 270
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 16/181 (8%)
Query: 317 RDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVE---- 372
++D G Y T N S EL V FI + + + T L+
Sbjct: 90 QEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFIS--YPQILTLSTSGVLVCPDLSE 147
Query: 373 -IRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA-VGR 430
R T++KI WY++ L+++ G + + + V+L D+G + C+ A G+
Sbjct: 148 FTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLL-VHDVALEDAGYYRCVLTFAHEGQ 206
Query: 431 SHC---SCELSVLVPKAYKAPFFTKELEAILTEQGT-VSLECKVM---GIPTPQLIWYKD 483
+ S EL + K P L+ I G+ +++ CKV G P ++W+
Sbjct: 207 QYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTA 266
Query: 484 N 484
N
Sbjct: 267 N 267
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 8/133 (6%)
Query: 560 VKAKIGTSAILECQVLVPPWPRSIYWYNKEG-VVEASDKYHIMADGLGGYSIEINYLEAV 618
V+ +G S C + P SI WYN +G + ++ + + +G+ + I
Sbjct: 12 VELSVGESKFFTCTAIGEP--ESIDWYNPQGEKIISTQRVVVQKEGVRS-RLTIYNANIE 68
Query: 619 DDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFP 678
D G ++C AT + G Q + + + +R+ + K +D V C+V P
Sbjct: 69 DAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFK--QGEDAEVV--CRVSSSP 124
Query: 679 TPTLQWFKDNEEL 691
P + W NEE+
Sbjct: 125 APAVSWLYHNEEV 137
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 9/126 (7%)
Query: 765 EFKFTVQVSISPEPKVSWFR-DDQQVVESDNVKILKETLGV-CHLKIHALEVADQAEWKC 822
E KF +I + W+ ++++ + V + KE GV L I+ + D ++C
Sbjct: 18 ESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKE--GVRSRLTIYNANIEDAGIYRC 75
Query: 823 IATNDFGQSITSCFLKLNVPKHYKKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWF 881
AT+ GQ+ + V + Y+K F E + +G + C+V P P + W
Sbjct: 76 QATDAKGQTQEATV----VLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWL 131
Query: 882 KDGREL 887
E+
Sbjct: 132 YHNEEV 137
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 25/165 (15%)
Query: 381 IHWYR-NDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
I WY K+ + Q +G + + + ++ D+G + C A +A G++ + +
Sbjct: 33 IDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT----QEAT 88
Query: 440 LVPKAYKAPFFTKELEAILTEQGT-VSLECKVMGIPTPQLIWYKDNKKIK--AGDIFALT 496
+V + Y+ F + + +QG + C+V P P + W N+++ + + FA+
Sbjct: 89 VVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAML 148
Query: 497 A------NPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLD 535
A + S G Y CE RV ARG+ F D
Sbjct: 149 ANNNLQILNINKSDEGIYRCEG-----------RVEARGEIDFRD 182
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
AP+F L D AV G L +R +I W N + ++ R+ + +
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQ---YARSTCEAGVAELH 67
Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+ D G +TCLAENA+G+ CS ++V
Sbjct: 68 IQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 39.7 bits (91), Expect = 0.010, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
AP F LK C ++F V +P P+++W + Q + + + GV L
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC----EAGVAEL 66
Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLN 840
I D + C+A N GQ S ++ ++
Sbjct: 67 HIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
Score = 37.7 bits (86), Expect = 0.037, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 447 APFFTKELE--AILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK------AGDIFALTAN 498
AP F+ L+ A++ Q V L+C V G P P++ W + + I+ + L
Sbjct: 11 APSFSSVLKDCAVIEGQDFV-LQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQ 69
Query: 499 PKDPSSLGTYTCEAVNCMG 517
P GTYTC A N +G
Sbjct: 70 DALPEDHGTYTCLAENALG 88
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 15/87 (17%)
Query: 848 PKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL- 905
P F LK + EG L+C V G P P + W +G+ ++ + + E G L
Sbjct: 12 PSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQ----YARSTCEAGVAELH 67
Query: 906 ---------GIYTCEAHNCMGTTSSSA 923
G YTC A N +G S SA
Sbjct: 68 IQDALPEDHGTYTCLAENALGQVSCSA 94
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 13/88 (14%)
Query: 652 PRFVESLK--AVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL---- 705
P F LK AV+ V +C V G P P + W + + ++ G + L
Sbjct: 12 PSFSSVLKDCAVIEGQDFV-LQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQD 70
Query: 706 ------GSYCCVAKNVMGKAESSTQLTI 727
G+Y C+A+N +G+ S +T+
Sbjct: 71 ALPEDHGTYTCLAENALGQVSCSAWVTV 98
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 851 LEELKAVL-------SEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTC 903
LEE++ V+ + GG V L C+V P P + W KDG L +I E G
Sbjct: 1 LEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQ 60
Query: 904 CLGIYTCEA-HNCMGTTSSSAALLGFEDKSQIEKAEEG 940
G Y+C A H+ G S A + S IE EEG
Sbjct: 61 DQGTYSCVATHSSHGPQESRAVSI-----SIIEPGEEG 93
Score = 36.6 bits (83), Expect = 0.086, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 462 GTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVN 514
GTV+L C+V P+PQ+ W KD + L P GTY+C A +
Sbjct: 19 GTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSCVATH 71
Score = 30.0 bits (66), Expect = 8.1, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 655 VESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDN----EELKPGDVYQLTGTSSLGSYCC 710
VE + G V+ C+V P+P + W KD P + G G+Y C
Sbjct: 8 VEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSC 67
Query: 711 VAKNVMGKAESSTQLTIEDI 730
VA + + S ++I I
Sbjct: 68 VATHSSHGPQESRAVSISII 87
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 848 PKFLEELKA-VLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLG 906
PK E +++ + +G + +V+G P P +W+K+G +++ D ED C L
Sbjct: 6 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELV 65
Query: 907 I----------YTCEAHNCMGTTSSSAALL 926
I +A N G TSS A LL
Sbjct: 66 IRDVTGEDSASIMVKAINIAGETSSHAFLL 95
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%)
Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH 806
+APK E ++S + F V+V P+P+ W+++ ++ SD + VC
Sbjct: 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFL 837
L I + D A A N G++ + FL
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAGETSSHAFL 94
>pdb|2GQH|A Chain A, Solution Structure Of The 15th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 107
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLG 803
+ + +F EGL++ +A E T+Q +S V W + + + + D L++
Sbjct: 3 SGSSGARFTEGLRNEEAM--EGATATLQCELSKAAPVEWRKGLEALRDGDKYS-LRQDGA 59
Query: 804 VCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL 839
VC L+IH L +AD + C+ GQ TS L +
Sbjct: 60 VCELQIHGLAMADNGVYSCVC----GQERTSATLTV 91
>pdb|2WNG|A Chain A, Complete Extracellular Structure Of Human Signal
Regulatory Protein (Sirp) Alpha
Length = 327
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 64/160 (40%), Gaps = 28/160 (17%)
Query: 554 IKEVENVKAKIGTSAILECQV--LVPPWP----------RSIYWYNKEG------VVEAS 595
I+ ++V G SAIL C V L+P P R + + KEG V S
Sbjct: 7 IQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSES 66
Query: 596 DKYHIMADGLGGYSIEINYLEAVDDGEWKCVA-TSSSGVKQFSAAYVHVLMPKNYRKPRF 654
K M +SI I+ + D G + CV S +F + L +
Sbjct: 67 TKRENM-----DFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPV 121
Query: 655 VESLKAVMTDDGLVSFECKVVGFPTP---TLQWFKDNEEL 691
V A T VSF C+ GF +P TL+WFK+ EL
Sbjct: 122 VSGPAARATPQHTVSFTCESHGF-SPRDITLKWFKNGNEL 160
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 857 VLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL--------GIY 908
L+ G L+CK G P P + W K+G D I E GT + G Y
Sbjct: 19 TLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ-EQGTLQIKNLRISDTGTY 77
Query: 909 TCEAHNCMGTTSSSAAL 925
TC A + G TS SA L
Sbjct: 78 TCVATSSSGETSWSAVL 94
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 548 GPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASD-KYHIMADGLG 606
GP PI ++ N + +A+L+C+ P P I W + D + I G
Sbjct: 7 GP-PIILQGPANQTLAVDGTALLKCKATGDPLPV-ISWLKEGFTFPGRDPRATIQEQG-- 62
Query: 607 GYSIEINYLEAVDDGEWKCVATSSSGVKQFSA 638
+++I L D G + CVATSSSG +SA
Sbjct: 63 --TLQIKNLRISDTGTYTCVATSSSGETSWSA 92
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 11/76 (14%)
Query: 665 DGLVSFECKVVGFPTPTLQWFKDNEELK---PGDVYQLTGT--------SSLGSYCCVAK 713
DG +CK G P P + W K+ P Q GT S G+Y CVA
Sbjct: 23 DGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVAT 82
Query: 714 NVMGKAESSTQLTIED 729
+ G+ S L + +
Sbjct: 83 SSSGETSWSAVLDVTE 98
>pdb|2EDQ|A Chain A, Solution Structure Of The Ig-Like Domain (3713-3806) Of
Human Obscurin
Length = 107
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 750 KFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKI 809
KFIEGL++ +AT E T+ +S V W R + + + L++ C L+I
Sbjct: 10 KFIEGLRNEEAT--EGDTATLWCELSKAAPVEW-RKGHETLRDGDRHSLRQDGSRCELQI 66
Query: 810 HALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
L V D E+ C+ GQ TS L +
Sbjct: 67 RGLAVVDAGEYSCVC----GQERTSATLTVRA 94
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Query: 553 FIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEI 612
FI+ + N +A G +A L C+ L P + W + D++ + DG ++I
Sbjct: 11 FIEGLRNEEATEGDTATLWCE-LSKAAP--VEWRKGHETLRDGDRHSLRQDG-SRCELQI 66
Query: 613 NYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVES 657
L VD GE+ CV G ++ SA +P RF+ES
Sbjct: 67 RGLAVVDAGEYSCVC----GQERTSATLTVRALP-----ARFIES 102
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 58/134 (43%), Gaps = 24/134 (17%)
Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSH--CSCELSVLVPKAYKAPFFTKELEAILTEQGTV 464
I SSV+ D+G +TC+ G+++ S L+VLVP + T + + +T
Sbjct: 67 ITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKP----TISVPSSVTIGNRA 122
Query: 465 SLECKVM-GIPTPQLIWYKDN--------KKIKAGDIFALTANPK------DPSSL---G 506
L C G P + W+KD KK +A + T +PK DP + G
Sbjct: 123 VLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSG 182
Query: 507 TYTCEAVNCMGAAF 520
Y C+A N G A
Sbjct: 183 EYYCQAQNGYGTAM 196
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 66/191 (34%), Gaps = 27/191 (14%)
Query: 759 QATVNEEFKFTVQVSISPEPKVSW--FRDDQQVVESDNVKIL-----KETLGVCHLKIHA 811
Q NE K T S P+V W + + N +I + T + +
Sbjct: 12 QVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSS 71
Query: 812 LEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLEC-KV 870
+ D E+ C+ + + GQ+ + L V KP + + ++ G L C +
Sbjct: 72 VTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTI--SVPSSVTIGNRAVLTCSEH 129
Query: 871 IGVPQPTLKWFKDGRELKAGDIHK---------IISGEDGTCCL--------GIYTCEAH 913
G P WFKDG + D K I + G G Y C+A
Sbjct: 130 DGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQ 189
Query: 914 NCMGTTSSSAA 924
N GT S A
Sbjct: 190 NGYGTAMRSEA 200
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 15/131 (11%)
Query: 310 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 369
+ V R D G Y+ S E G + + + + VP + I +V +G RA L
Sbjct: 67 ITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPS--SVTIGNRAVL 124
Query: 370 LV---EIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYF-IDLSS-------VSLFDSG 418
+ P+E W+++ + +T+ N F ID S V+ FDSG
Sbjct: 125 TCSEHDGSPPSEYS--WFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSG 182
Query: 419 RWTCLAENAVG 429
+ C A+N G
Sbjct: 183 EYYCQAQNGYG 193
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/78 (19%), Positives = 37/78 (47%)
Query: 766 FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT 825
T V P P+VSW ++++ + ++D+ + E + I+ + AD ++ +
Sbjct: 135 LNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVK 194
Query: 826 NDFGQSITSCFLKLNVPK 843
N +G + + + +P+
Sbjct: 195 NKYGSETSDFTVSVFIPE 212
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 858 LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGD 891
+ EG A+NL C V G P P + W K+ + L D
Sbjct: 129 IQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTD 162
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 19/115 (16%)
Query: 348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIK------------------IHWYRNDRK 389
+A A +RL A+ RAR+L + I+ + W +N++
Sbjct: 98 EAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKA 157
Query: 390 LEENKIYRTQHD-GNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPK 443
L + + + G + ++ VS DSG++ + +N G +SV +P+
Sbjct: 158 LAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIPE 212
>pdb|3JZ7|A Chain A, Crystal Structure Of The Extracellular Domains Of
Coxsackie & Adenovirus Receptor From Mouse (Mcar)
Length = 214
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 11/142 (7%)
Query: 304 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKV 363
+ G +N+ ++ D G Y G + KF L+V + P+ R D + ++
Sbjct: 80 KSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK----PSGTRCFVDGSEEI 135
Query: 364 GTRARLLVEIRSPT-EIKIHWYRNDRKLEENKIYRTQHDGNFY--FIDLSSVSLFDSGRW 420
G +L E + + ++ W +KL +++ T I + + S SG +
Sbjct: 136 GNDFKLKCEPKEGSLPLQFEW----QKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTY 191
Query: 421 TCLAENAVGRSHCSCELSVLVP 442
+C +N VG C L V+ P
Sbjct: 192 SCTVQNRVGSDQCMLRLDVVPP 213
>pdb|3MJ7|B Chain B, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
Length = 225
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 11/142 (7%)
Query: 304 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKV 363
+ G +N+ ++ D G Y G + KF L+V + P+ R D + ++
Sbjct: 82 KSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK----PSGTRCFVDGSEEI 137
Query: 364 GTRARLLVEIRSPT-EIKIHWYRNDRKLEENKIYRTQHDGNFY--FIDLSSVSLFDSGRW 420
G +L E + + ++ W +KL +++ T I + + S SG +
Sbjct: 138 GNDFKLKCEPKEGSLPLQFEW----QKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTY 193
Query: 421 TCLAENAVGRSHCSCELSVLVP 442
+C +N VG C L V+ P
Sbjct: 194 SCTVQNRVGSDQCMLRLDVVPP 215
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEI-KIHWYRNDRKLEENKIYRTQ----HDGN 403
AP + D+ V G A L + R+ T + ++W + L + YR + HDG
Sbjct: 312 APVIVEPPTDLNVTEGMAAEL--KCRTGTSMTSVNWLTPNGTLMTHGSYRVRISVLHDGT 369
Query: 404 FYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
F ++V++ D+G++TC+ N+ G + S L+V
Sbjct: 370 LNF---TNVTVQDTGQYTCMVTNSAGNTTASATLNV 402
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
AP+ ++ ++ G +A L+C+ S+ W G + Y + L +
Sbjct: 312 APVIVEPPTDLNVTEGMAAELKCRTGTSM--TSVNWLTPNGTLMTHGSYRVRISVLHDGT 369
Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSAA 639
+ + D G++ C+ T+S+G SA
Sbjct: 370 LNFTNVTVQDTGQYTCMVTNSAGNTTASAT 399
>pdb|1HNF|A Chain A, Crystal Structure Of The Extracellular Region Of The Human
Cell Adhesion Molecule Cd2 At 2.5 Angstroms Resolution
Length = 182
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 18/150 (12%)
Query: 775 SPEPKVSWFRDDQQVV-ESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT 833
S + K++ FR +++ E D K+ K LKI L+ DQ +K + G+++
Sbjct: 39 SDKKKIAQFRKEKETFKEKDTYKLFKNGT----LKIKHLKTDDQDIYKVSIYDTKGKNVL 94
Query: 834 SCFLKLNVPKHYKKPKFLEELKAVLSEGGAVN--LECKVIGVPQPTLKWFKDGRELKAGD 891
L + + KPK +N L C+V+ P L ++DG+ LK
Sbjct: 95 EKIFDLKIQERVSKPKI---------SWTCINTTLTCEVMNGTDPELNLYQDGKHLKLS- 144
Query: 892 IHKIISGEDGTCCLGIYTCEAHNCMGTTSS 921
++I+ + T + C A N + SS
Sbjct: 145 -QRVITHKWTTSLSAKFKCTAGNKVSKESS 173
>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like Domain(2826-2915)
From Human Obscurin
Length = 103
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 351 AFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLS 410
A I+ L D V G L E+ S +HW ++ + + +++ Y +G + +
Sbjct: 10 AIIKPLEDQWVAPGEDVELRCEL-SRAGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIR 68
Query: 411 SVSLFDSGRWTCLAE 425
SL D+G +TC E
Sbjct: 69 GASLKDAGEYTCEVE 83
>pdb|2DM7|A Chain A, Solution Structure Of The 14th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 108
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 750 KFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKI 809
+F + LK+ +A +E T+Q +S V W + + + + LK+ C L+I
Sbjct: 10 RFTQDLKTKEA--SEGATATLQCELSKVAPVEWKKGPETLRDGGRYS-LKQDGTRCELQI 66
Query: 810 HALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
H L VAD E+ C+ GQ TS L +
Sbjct: 67 HDLSVADAGEYSCMC----GQERTSATLTVRA 94
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From Human
Advanced Glycosylation End Product-Specific Receptor
Length = 96
Score = 36.6 bits (83), Expect = 0.074, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 851 LEELKAVL-------SEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTC 903
LEE++ V+ + GG V L C+V P P + W KDG L +I E G
Sbjct: 8 LEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQ 67
Query: 904 CLGIYTCEA-HNCMGTTSSSA 923
G Y+C A H+ G S A
Sbjct: 68 DQGTYSCVATHSSHGPQESRA 88
Score = 36.6 bits (83), Expect = 0.075, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 462 GTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVN 514
GTV+L C+V P+PQ+ W KD + L P GTY+C A +
Sbjct: 26 GTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSCVATH 78
Score = 29.6 bits (65), Expect = 8.7, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 655 VESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDN----EELKPGDVYQLTGTSSLGSYCC 710
VE + G V+ C+V P+P + W KD P + G G+Y C
Sbjct: 15 VEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSC 74
Query: 711 VAKNVMGKAESSTQLTIEDI 730
VA + + S ++I I
Sbjct: 75 VATHSSHGPQESRAVSISII 94
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 36.6 bits (83), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 743 LTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETL 802
T + AP+ ++S + + +F + V P +V W+ + ++ ES + T
Sbjct: 3 FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIH-YTNTS 61
Query: 803 GVCHLKIHALEVADQAEWKCIATNDFGQS 831
GV L+I D ++ + TN G++
Sbjct: 62 GVLTLEILDCHTDDSGTYRAVCTNYKGEA 90
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEE-NKIYRTQHDGNFYFI 407
AP R+ V G R ++ ++S ++ WY N +L+E +KI+ T G +
Sbjct: 8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSG-VLTL 66
Query: 408 DLSSVSLFDSGRWTCLAENAVGRS 431
++ DSG + + N G +
Sbjct: 67 EILDCHTDDSGTYRAVCTNYKGEA 90
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 13/72 (18%)
Query: 670 FECKVVGFPTPTLQWFKDNEELKPGDVYQLTGT-------------SSLGSYCCVAKNVM 716
F C G P PT+ W + + L +Q+T T S G+Y V +N
Sbjct: 28 FSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSE 87
Query: 717 GKAESSTQLTIE 728
GK E+ LTI+
Sbjct: 88 GKQEAEFTLTIQ 99
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 860 EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIIS 897
EG + C G P PT+ W + G+ L H++ +
Sbjct: 22 EGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT 59
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 36.2 bits (82), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 13/72 (18%)
Query: 670 FECKVVGFPTPTLQWFKDNEELKPGDVYQLTGT-------------SSLGSYCCVAKNVM 716
F C G P PT+ W + + L +Q+T T S G+Y V +N
Sbjct: 34 FSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSE 93
Query: 717 GKAESSTQLTIE 728
GK E+ LTI+
Sbjct: 94 GKQEAEFTLTIQ 105
>pdb|2YXM|A Chain A, Crystal Structure Of I-Set Domain Of Human Myosin Binding
Proteinc
pdb|2YUV|A Chain A, Solution Structure Of 2nd Immunoglobulin Domain Of Slow
Type Myosin-Binding Protein C
Length = 100
Score = 36.2 bits (82), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 351 AFIRRLHDIAVKV--GTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
A ++ D A +V G R R +VE+ P ++++ WY+N +++ + Y +H G +
Sbjct: 8 AAFAKILDPAYQVDKGGRVRFVVELADP-KLEVKWYKNGQEIRPSTKYIFEHKGCQRILF 66
Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+++ + D + A G CS EL V
Sbjct: 67 INNCQMTDDSEYYVTA----GDEKCSTELFV 93
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 61/155 (39%), Gaps = 26/155 (16%)
Query: 393 NKIYRTQHDGNFYF---IDLSSVSLFDSGRWTCLAENAVGRSH--CSCELSVLVPKAYKA 447
NKI + D + I SV+ D+G +TC+ G S+ +L VLVP +
Sbjct: 53 NKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKP- 111
Query: 448 PFFTKELEAILTEQGTVSLECKVM-GIPTPQLIWYKDN-------KKIKAGDIFALTANP 499
T + + T L C G P + W+KD K +A + NP
Sbjct: 112 ---TVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNP 168
Query: 500 K------DP---SSLGTYTCEAVNCMGAAFSTSRV 525
DP S G Y+CEA N G +++ V
Sbjct: 169 TTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAV 203
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 73/213 (34%), Gaps = 43/213 (20%)
Query: 451 TKELEAILTEQGTVSLECKVMGIPTPQLIWYKD----------NKKIKAGDIFALTANPK 500
+ E E + E V L C G +P++ W D N KI A +T P
Sbjct: 9 SSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPT 68
Query: 501 DPS-------SLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIF 553
+ GTYTC V G S+ + V L+PP +
Sbjct: 69 GITFKSVTREDTGTYTC-------------MVSEEGGNSYGE-VKVKLIVLVPPSKPTVN 114
Query: 554 IKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIE-- 611
I A IG A+L C P W+ K+G+V ++ A Y +
Sbjct: 115 IPS----SATIGNRAVLTCSEQDGSPPSEYTWF-KDGIVMPTNPKSTRAFSNSSYVLNPT 169
Query: 612 -----INYLEAVDDGEWKCVATSSSGVKQFSAA 639
+ L A D GE+ C A + G S A
Sbjct: 170 TGELVFDPLSASDTGEYSCEARNGYGTPMTSNA 202
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/207 (19%), Positives = 70/207 (33%), Gaps = 50/207 (24%)
Query: 664 DDGLVSFECKVVGFPTPTLQW--------------------FKDNEELKP-GDVYQLTGT 702
++ V C GF +P ++W ++D P G ++
Sbjct: 18 ENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTR 77
Query: 703 SSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATV 762
G+Y C+ G + ++ KL++L P + S
Sbjct: 78 EDTGTYTCMVSEEGGNSYGEVKV-------------KLIVLVPPSKPTV--NIPSSATIG 122
Query: 763 NEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVK----------ILKETLGVCHLKIHAL 812
N + SP + +WF+D +V N K +L T G L L
Sbjct: 123 NRAVLTCSEQDGSPPSEYTWFKDG--IVMPTNPKSTRAFSNSSYVLNPTTG--ELVFDPL 178
Query: 813 EVADQAEWKCIATNDFGQSITSCFLKL 839
+D E+ C A N +G +TS +++
Sbjct: 179 SASDTGEYSCEARNGYGTPMTSNAVRM 205
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 14/132 (10%)
Query: 308 TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRA 367
T + + V R+D G Y+ S E G S + ++ + VP + + + +G RA
Sbjct: 68 TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPS--SATIGNRA 125
Query: 368 RLLVEIR---SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSS-------VSLFDS 417
L + P+E W+++ + N + Y ++ ++ +S D+
Sbjct: 126 VLTCSEQDGSPPSEYT--WFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDT 183
Query: 418 GRWTCLAENAVG 429
G ++C A N G
Sbjct: 184 GEYSCEARNGYG 195
>pdb|4DEP|B Chain B, Structure Of The Il-1b Signaling Complex
pdb|4DEP|E Chain E, Structure Of The Il-1b Signaling Complex
Length = 321
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 70/176 (39%), Gaps = 33/176 (18%)
Query: 375 SPTEIK--IHWYRNDRKL-----EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA 427
+P E K I WY++D K + ++I+ QH +F+ + DSG + C+ N+
Sbjct: 32 NPNEHKGTITWYKDDSKTPVSTEQASRIH--QHKEKLWFV---PAKVEDSGHYYCVVRNS 86
Query: 428 VGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVS----LECKVMGI------PTPQ 477
S+C + + P +AI ++ V+ L C M P+
Sbjct: 87 ---SYC-LRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPK 142
Query: 478 LIWYKDNKKIKAGDIF------ALTANPKDPSSLGTYTCEA-VNCMGAAFSTSRVI 526
L WYKD K + +I L G YTC A +G + +RVI
Sbjct: 143 LQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVI 198
>pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor With The
Interleukin-1 Receptor Antagonist (il1ra)
pdb|4GAF|B Chain B, Crystal Structure Of Ebi-005, A Chimera Of Human Il-1beta
And Il-1ra, Bound To Human Interleukin-1 Receptor Type 1
Length = 319
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 70/176 (39%), Gaps = 33/176 (18%)
Query: 375 SPTEIK--IHWYRNDRKL-----EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA 427
+P E K I WY++D K + ++I+ QH +F+ + DSG + C+ N+
Sbjct: 30 NPNEHKGTITWYKDDSKTPVSTEQASRIH--QHKEKLWFV---PAKVEDSGHYYCVVRNS 84
Query: 428 VGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVS----LECKVMGI------PTPQ 477
S+C + + P +AI ++ V+ L C M P+
Sbjct: 85 ---SYC-LRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPK 140
Query: 478 LIWYKDNKKIKAGDIF------ALTANPKDPSSLGTYTCEA-VNCMGAAFSTSRVI 526
L WYKD K + +I L G YTC A +G + +RVI
Sbjct: 141 LQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVI 196
>pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed With Interleukin-1
Beta
Length = 315
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 70/176 (39%), Gaps = 33/176 (18%)
Query: 375 SPTEIK--IHWYRNDRKL-----EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA 427
+P E K I WY++D K + ++I+ QH +F+ + DSG + C+ N+
Sbjct: 30 NPNEHKGTITWYKDDSKTPVSTEQASRIH--QHKEKLWFV---PAKVEDSGHYYCVVRNS 84
Query: 428 VGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVS----LECKVMGI------PTPQ 477
S+C + + P +AI ++ V+ L C M P+
Sbjct: 85 ---SYC-LRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPK 140
Query: 478 LIWYKDNKKIKAGDIF------ALTANPKDPSSLGTYTCEA-VNCMGAAFSTSRVI 526
L WYKD K + +I L G YTC A +G + +RVI
Sbjct: 141 LQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVI 196
>pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Antagonist Peptide
Af10847
Length = 312
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 70/176 (39%), Gaps = 33/176 (18%)
Query: 375 SPTEIK--IHWYRNDRKL-----EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA 427
+P E K I WY++D K + ++I+ QH +F+ + DSG + C+ N+
Sbjct: 27 NPNEHKGTITWYKDDSKTPVSTEQASRIH--QHKEKLWFV---PAKVEDSGHYYCVVRNS 81
Query: 428 VGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVS----LECKVMGI------PTPQ 477
S+C + + P +AI ++ V+ L C M P+
Sbjct: 82 ---SYC-LRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPK 137
Query: 478 LIWYKDNKKIKAGDIF------ALTANPKDPSSLGTYTCEA-VNCMGAAFSTSRVI 526
L WYKD K + +I L G YTC A +G + +RVI
Sbjct: 138 LQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVI 193
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 83 NRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 130
RF N D T L I V++ DGG Y+++ NE G +A + + S
Sbjct: 52 GRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 190 NRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 237
RF N D T L I V++ DGG Y+++ NE G +A + + S
Sbjct: 52 GRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 297 NRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
RF N D T L I V++ DGG Y+++ NE G +A + + S
Sbjct: 52 GRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 71/359 (19%), Positives = 126/359 (35%), Gaps = 50/359 (13%)
Query: 127 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHP 186
SV P P+ D+ V+VG RLL P +K F++
Sbjct: 3 SVSPGEPSPPSIHPGKSDLIVRVGDEIRLLC--TDPGFVKWTFEI--------------- 45
Query: 187 IFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFI 246
N + + E + + G+Y T +N+ G S + + F+
Sbjct: 46 -----LDETNENKQNEWITEKAEATNTGKY--TCTNKHGLSNSIY------------VFV 86
Query: 247 RRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDG 306
R D A L + S T ++C +S + P+ R I D
Sbjct: 87 R---DPAKLFLVDRSLYGKEDSDTLVRCPLTDPEVTSYSLKGCQGKPL-PKDLRFI-PDP 141
Query: 307 RTELNIRRVRRDDGGRYSVTASNESGYS--TAKFELSVESQVPDAPAFIRRLHDIAVKVG 364
+ + I+ V+R + ++ G S + KF L V P ++ G
Sbjct: 142 KAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREG 201
Query: 365 TRARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDGNFYF-----IDLSSVSLFDSG 418
+ I+ + + W R + + + + Y + H G+F + + +SS + DSG
Sbjct: 202 EEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSG 261
Query: 419 RWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQ 477
+ C A N G ++ + L V V K + F + + V L + P P+
Sbjct: 262 VFMCYANNTFGSANVTTTLEV-VDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPE 319
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 654 FVESLKAVMTDDGLVS--FECKVVGFPTPTLQWF 685
+V + ++T D LV+ +C GFP PT+ W+
Sbjct: 383 YVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWY 416
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 383 WYRNDRKLEENKIYRTQHDGNFYF-----IDLSSVSLFDSGRWTCLAENAVGRSHCSCEL 437
W R + + + + Y + H G+F + + +SS + DSG + C A N G ++ + L
Sbjct: 246 WKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTL 305
Query: 438 SVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQ 477
V V K + F + + V L + P P+
Sbjct: 306 EV-VDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPE 344
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 654 FVESLKAVMTDDGLVS--FECKVVGFPTPTLQWF 685
+V + ++T D LV+ +C GFP PT+ W+
Sbjct: 408 YVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWY 441
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 83 NRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 130
RF N D T L I V++ DGG Y+++ NE G +A + + S
Sbjct: 54 GRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 101
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 190 NRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 237
RF N D T L I V++ DGG Y+++ NE G +A + + S
Sbjct: 54 GRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 101
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 297 NRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
RF N D T L I V++ DGG Y+++ NE G +A + + S
Sbjct: 54 GRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 101
>pdb|3RBS|A Chain A, Crystal Structure Of The Myomesin Domains 10 And 11
Length = 207
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 36/156 (23%)
Query: 365 TRARLLVEIRSPTEI-------------KIHWYRNDRKLEENKIYRTQHDGNFYFIDLSS 411
T++ L VEI ++ K+++ N++++ E Y+ D N I++
Sbjct: 6 TKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFM 65
Query: 412 VSLFDS--GRWTCLAENAVGRSHCSCELSVLVPKAYK-----------------APFFTK 452
L D G +T ++ +H + VLV +K P F +
Sbjct: 66 EKLQDEDEGTYTFQLQDGKATNHSTV---VLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 122
Query: 453 ELEAILTEQGTVSLECKVMGIPTP-QLIWYKDNKKI 487
L +T + V L+CKV I ++WYKD ++I
Sbjct: 123 YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREI 158
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 848 PKFLEELKAVLSEGGAVNLECKVIGVPQPT-LKWFKDGRELKAGDIHKIISGEDGTCCLG 906
P F+E L ++ V L+CKV + + T + W+KD RE+ + H +DG C L
Sbjct: 118 PHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF---KDGICTLL 174
Query: 907 I 907
I
Sbjct: 175 I 175
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 33.9 bits (76), Expect = 0.50, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKA---------GDIHKIIS 897
P FL + V + G L+C V+G P P + W K G++L A G H ++
Sbjct: 15 PCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLL 74
Query: 898 GEDGTCCLGIYTCEAHN 914
G+Y C A N
Sbjct: 75 TAALPTDAGVYVCRARN 91
Score = 33.5 bits (75), Expect = 0.60, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 466 LECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD---------PSSLGTYTCEAVN 514
L+C V+G P P ++W K +++ A + + A+ + P+ G Y C A N
Sbjct: 34 LKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 91
Score = 30.4 bits (67), Expect = 5.5, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 44/95 (46%)
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL 409
P F+RR + V G A L + + W + ++L ++ DG + + L
Sbjct: 15 PCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLL 74
Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKA 444
++ D+G + C A NA G ++ + ++VL P A
Sbjct: 75 TAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPPA 109
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 33.9 bits (76), Expect = 0.52, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 466 LECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD---------PSSLGTYTCEAVN 514
L+C V+G P P ++W K +++ A + + A+ + P+ G Y C A N
Sbjct: 33 LKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 90
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKA---------GDIHKIIS 897
P FL + V + G L+C V+G P P + W K G++L A G H ++
Sbjct: 14 PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLL 73
Query: 898 GEDGTCCLGIYTCEAHN 914
G+Y C A N
Sbjct: 74 TAALPTDAGVYVCRARN 90
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 33.9 bits (76), Expect = 0.54, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 14/74 (18%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD--------------VYQLTGTSSLGSYCCVAK 713
V F C G P PT++W K+ +E K + + S G+Y CV +
Sbjct: 30 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 89
Query: 714 NVMGKAESSTQLTI 727
N G + L +
Sbjct: 90 NEYGSINHTYHLDV 103
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 17/89 (19%)
Query: 446 KAPFFT------KELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA---------- 489
+AP++T K L A+ TV C G P P + W K+ K+ K
Sbjct: 7 RAPYWTNTEKMEKRLHAV-PAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 65
Query: 490 GDIFALTANPKDPSSLGTYTCEAVNCMGA 518
++L PS G YTC N G+
Sbjct: 66 NQHWSLIMESVVPSDKGNYTCVVENEYGS 94
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 851 LEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELK 888
+E+ + V C G P PT++W K+G+E K
Sbjct: 17 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK 54
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 33.9 bits (76), Expect = 0.54, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 14/74 (18%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD--------------VYQLTGTSSLGSYCCVAK 713
V F C G P PT++W K+ +E K + + S G+Y CV +
Sbjct: 26 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 85
Query: 714 NVMGKAESSTQLTI 727
N G + L +
Sbjct: 86 NEYGSINHTYHLDV 99
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 17/89 (19%)
Query: 446 KAPFFT------KELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA---------- 489
+AP++T K L A+ TV C G P P + W K+ K+ K
Sbjct: 3 RAPYWTNTEKMEKRLHAV-PAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 61
Query: 490 GDIFALTANPKDPSSLGTYTCEAVNCMGA 518
++L PS G YTC N G+
Sbjct: 62 NQHWSLIMESVVPSDKGNYTCVVENEYGS 90
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 851 LEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELK 888
+E+ + V C G P PT++W K+G+E K
Sbjct: 13 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK 50
>pdb|3S58|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S58|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
Length = 223
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 17/152 (11%)
Query: 556 EVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEIN-- 613
+ +N+ A+IG +L+C+ P+ + W G EA + +++ GG +
Sbjct: 4 DAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA---WKVLSPQGGGPWDSVARV 60
Query: 614 ------YLEAV---DDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTD 664
+L AV D+G ++C A + +G + S V V KP V+S +
Sbjct: 61 LPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPG--KPEIVDSASELTAG 118
Query: 665 DGLVSFECKVVG-FPTPTLQWFKDNEELKPGD 695
C G +P TL W D + L P +
Sbjct: 119 VPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNE 150
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 33.9 bits (76), Expect = 0.56, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 466 LECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD---------PSSLGTYTCEAVN 514
L+C V+G P P ++W K +++ A + + A+ + P+ G Y C A N
Sbjct: 34 LKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 91
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKA---------GDIHKIIS 897
P FL + V + G L+C V+G P P + W K G++L A G H ++
Sbjct: 15 PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLL 74
Query: 898 GEDGTCCLGIYTCEAHN 914
G+Y C A N
Sbjct: 75 TAALPTDAGVYVCRARN 91
>pdb|2UXQ|A Chain A, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|B Chain B, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|C Chain C, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|D Chain D, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXR|A Chain A, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|2UXR|B Chain B, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|4AOV|A Chain A, Dpidh-Nadp. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
Length = 402
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 106 GGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEI 165
GG+ + ++++G T + + V D PA ++ +H+ +G AR E +I
Sbjct: 148 GGKLEIVVTDKNGKETRQTIMEV-----DEPAIVQGIHNTVASIGHFARACFEYSLDQKI 202
Query: 166 KCQFDLNNTI 175
C F +TI
Sbjct: 203 DCWFATKDTI 212
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 213 GGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEI 272
GG+ + ++++G T + + V D PA ++ +H+ +G AR E +I
Sbjct: 148 GGKLEIVVTDKNGKETRQTIMEV-----DEPAIVQGIHNTVASIGHFARACFEYSLDQKI 202
Query: 273 KCQFDLNNTI 282
C F +TI
Sbjct: 203 DCWFATKDTI 212
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 33.5 bits (75), Expect = 0.59, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 14/74 (18%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD--------------VYQLTGTSSLGSYCCVAK 713
V F C G P PT++W K+ +E K + + S G+Y CV +
Sbjct: 31 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 90
Query: 714 NVMGKAESSTQLTI 727
N G + L +
Sbjct: 91 NEYGSINHTYHLDV 104
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 17/89 (19%)
Query: 446 KAPFFT------KELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA---------- 489
+AP++T K L A+ TV C G P P + W K+ K+ K
Sbjct: 8 RAPYWTNTEKMEKRLHAV-PAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 66
Query: 490 GDIFALTANPKDPSSLGTYTCEAVNCMGA 518
++L PS G YTC N G+
Sbjct: 67 NQHWSLIMESVVPSDKGNYTCVVENEYGS 95
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 864 VNLECKVIGVPQPTLKWFKDGRELK 888
V C G P PT++W K+G+E K
Sbjct: 31 VKFRCPAGGNPMPTMRWLKNGKEFK 55
>pdb|2EDR|A Chain A, Solution Structure Of The Ig-Like Domain (3361-3449) Of
Human Obscurin
Length = 102
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 764 EEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCI 823
E T++ +S V W + + + + D L++ VC L+I L VAD E+ C+
Sbjct: 22 EGATATLRCELSKAAPVEWRKGRESLRDGDR-HSLRQDGAVCELQICGLAVADAGEYSCV 80
Query: 824 ATND 827
+
Sbjct: 81 CGEE 84
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEI-KIHWYRNDRKLEENKIYRTQ----HDGN 403
AP + D+ V G A L + R+ T + + W + + + Y+ + DG
Sbjct: 341 APVIVEPPADLNVTEGMAAEL--KCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGT 398
Query: 404 FYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
F ++V++ D+G +TC+ N+VG + S L+V
Sbjct: 399 LNF---TNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
AP+ ++ ++ G +A L+C+ S+ W G V Y + L +
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRASTSL--TSVSWITPNGTVMTHGAYKVRIAVLSDGT 398
Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSAA 639
+ + D G + C+ ++S G SA
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGNTTASAT 428
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 33.5 bits (75), Expect = 0.72, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 12/84 (14%)
Query: 854 LKAVLSEGGAVNLECKVIGVPQPT-LKWFKDGRELKAGDIHKIISGEDGTCCL------- 905
+ AV EGG V CK+ Q T + W+ R+L+ + ++ I+ EDG L
Sbjct: 9 MHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYE-ITYEDGVAILYVKDITK 67
Query: 906 ---GIYTCEAHNCMGTTSSSAALL 926
G Y C+ N G SS A L
Sbjct: 68 LDDGTYRCKVVNDYGEDSSYAELF 91
>pdb|1UGN|A Chain A, Crystal Structure Of Lir1.02, One Of The Alleles Of Lir1
Length = 198
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 409 LSSVSLFDSGRWTCL-AENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLE 467
+ S++ +GR+ C + GRS S L ++V AY P + + ++ G V+L+
Sbjct: 62 IPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQ 121
Query: 468 C 468
C
Sbjct: 122 C 122
>pdb|3D2U|D Chain D, Structure Of Ul18, A Peptide-binding Viral Mhc Mimic,
Bound To A Host Inhibitory Receptor
pdb|3D2U|H Chain H, Structure Of Ul18, A Peptide-binding Viral Mhc Mimic,
Bound To A Host Inhibitory Receptor
Length = 198
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 409 LSSVSLFDSGRWTCL-AENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLE 467
+ S++ +GR+ C + GRS S L ++V AY P + + ++ G V+L+
Sbjct: 62 IPSITWEHAGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQ 121
Query: 468 C 468
C
Sbjct: 122 C 122
>pdb|2E6P|A Chain A, Solution Structure Of The Ig-Like Domain (714-804) From
Human Obscurin-Like Protein 1
Length = 104
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 383 WYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN 426
WY++ +K+EE+++ + DG + + L + DSG + C E
Sbjct: 43 WYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEG 86
>pdb|3CJJ|A Chain A, Crystal Structure Of Human Rage Ligand-Binding Domain
Length = 219
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 17/150 (11%)
Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEIN---- 613
+N+ A+IG +L+C+ P+ + W G EA + +++ GG +
Sbjct: 3 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA---WKVLSPQGGGPWDSVARVLP 59
Query: 614 ----YLEAV---DDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG 666
+L AV D+G ++C A + +G + S V V KP V+S +
Sbjct: 60 NGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPG--KPEIVDSASELTAGVP 117
Query: 667 LVSFECKVVG-FPTPTLQWFKDNEELKPGD 695
C G +P TL W D + L P +
Sbjct: 118 NKVGTCVSEGSYPAGTLSWHLDGKPLVPNE 147
>pdb|1G0X|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Lir-1
(Ilt2)
pdb|1P7Q|D Chain D, Crystal Structure Of Hla-A2 Bound To Lir-1, A Host And
Viral Mhc Receptor
pdb|1UFU|A Chain A, Crystal Structure Of Ligand Binding Domain Of
Immunoglobulin-Like Transcript 2 (Ilt2; Lir-1)
Length = 197
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 409 LSSVSLFDSGRWTCL-AENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLE 467
+ S++ +GR+ C + GRS S L ++V AY P + + ++ G V+L+
Sbjct: 61 IPSITWEHAGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQ 120
Query: 468 C 468
C
Sbjct: 121 C 121
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 47/137 (34%), Gaps = 29/137 (21%)
Query: 612 INYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL--MPKNYRKPRFVESLKAVMTDDGLVS 669
IN A D GE+ CV S K + V + + R E A+M
Sbjct: 60 INKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMY------ 113
Query: 670 FECKVVGFPTPTLQWFK-------------------DNEELKPGDVYQLTGTSSLGSYCC 710
CK VG+P P W K + E ++ L T G Y C
Sbjct: 114 --CKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYEC 171
Query: 711 VAKNVMGKAESSTQLTI 727
A N +G A ST L +
Sbjct: 172 NATNSIGSASVSTVLRV 188
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 861 GGAVNLECKVIGVPQPTLKWFKDGR 885
GG+V L C+ +G P P ++W+ +G+
Sbjct: 36 GGSVELHCEAVGSPVPEIQWWFEGQ 60
>pdb|2EDT|A Chain A, Solution Structure Of The Ig-Like Domain (3449-3537) From
Human Obscurin
Length = 102
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 750 KFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKI 809
KF EGL++ +A E + +S V W + + + + D IL++ C L+I
Sbjct: 10 KFTEGLRNEEAV--EGATAMLWCELSKVAPVEWRKGPENLRDGDRY-ILRQEGTRCELQI 66
Query: 810 HALEVADQAEWKCIATNDFGQSITSCFLKL 839
L +AD E+ C+ GQ TS L +
Sbjct: 67 CGLAMADAGEYLCVC----GQERTSATLTI 92
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 861 GGAVNLECKVIGVPQPTLKWFKDGR 885
GG+V L C+ +G P P ++W+ +G+
Sbjct: 36 GGSVELHCEAVGSPVPEIQWWFEGQ 60
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 52/137 (37%), Gaps = 38/137 (27%)
Query: 803 GVCHLKIHA----LEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVL 858
G CH +H L DQA ++C A P P+ L +
Sbjct: 327 GRCHAPMHMRGRYLVEVDQASFQCSA-----------------PFIMDAPRDLN-----I 364
Query: 859 SEGGAVNLECKVIGVPQPTLKWF-KDGRELKAGDIHKIISG-EDGTCCL--------GIY 908
SEG L+C+ P ++KW +G L H IS DGT G+Y
Sbjct: 365 SEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVY 422
Query: 909 TCEAHNCMGTTSSSAAL 925
TC N G +++SA L
Sbjct: 423 TCMVTNVAGNSNASAYL 439
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 22/123 (17%)
Query: 321 GRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIK 380
GRY V S +A F + DAP D+ + G A L + R+P
Sbjct: 337 GRYLVEVDQASFQCSAPF-------IMDAP------RDLNISEGRMAEL--KCRTPPMSS 381
Query: 381 IHWYRNDRKLEENKIYRTQ----HDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCE 436
+ W + + + + +DG F S V L D+G +TC+ N G S+ S
Sbjct: 382 VKWLLPNGTVLSHASRHPRISVLNDGTLNF---SHVLLSDTGVYTCMVTNVAGNSNASAY 438
Query: 437 LSV 439
L+V
Sbjct: 439 LNV 441
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 548 GPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHI--MADGL 605
GP P+ + N + + +L C P P +I W K+GV+ ++ I + +G+
Sbjct: 7 GP-PVIRQGPVNQTVAVDGTFVLSCVATGSPVP-TILW-RKDGVLVSTQDSRIKQLENGV 63
Query: 606 GGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
++I Y + D G + C+A++ SG +S AY+ V
Sbjct: 64 ----LQIRYAKLGDTGRYTCIASTPSGEATWS-AYIEV 96
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 862 GAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL--------GIYTCEAH 913
G L C G P PT+ W KDG + D +I E+G + G YTC A
Sbjct: 24 GTFVLSCVATGSPVPTILWRKDGVLVSTQD-SRIKQLENGVLQIRYAKLGDTGRYTCIAS 82
Query: 914 NCMGTTSSSAAL 925
G + SA +
Sbjct: 83 TPSGEATWSAYI 94
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 13/77 (16%)
Query: 665 DGLVSFECKVVGFPTPTLQWFKDN----------EELKPGDVYQL--TGTSSLGSYCCVA 712
DG C G P PT+ W KD ++L+ G V Q+ G Y C+A
Sbjct: 23 DGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG-VLQIRYAKLGDTGRYTCIA 81
Query: 713 KNVMGKAESSTQLTIED 729
G+A S + +++
Sbjct: 82 STPSGEATWSAYIEVQE 98
>pdb|2OTP|A Chain A, Crystal Structure Of Immunoglobulin-Like Transcript 1
(Ilt1LIR7LILRA2)
pdb|2OTP|B Chain B, Crystal Structure Of Immunoglobulin-Like Transcript 1
(Ilt1LIR7LILRA2)
Length = 196
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 382 HWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV 441
H YR ++ + + R Q G + S++ +GR+ C + S S L ++V
Sbjct: 36 HLYRENK--SASWVRRIQEPGKNGQFPIPSITWEHAGRYHCQYYSHNHSSEYSDPLELVV 93
Query: 442 PKAYKAPFFTKELEAILTEQGTVSLEC 468
AY P + ++T G V+L+C
Sbjct: 94 TGAYSKPTLSALPSPVVTLGGNVTLQC 120
>pdb|1VDG|A Chain A, Crystal Structure Of Lir1.01, One Of The Alleles Of Lir1
pdb|1VDG|B Chain B, Crystal Structure Of Lir1.01, One Of The Alleles Of Lir1
Length = 197
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 409 LSSVSLFDSGRWTCL-AENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLE 467
+ S++ +GR+ C + GRS S L ++V AY P + + ++ G V L+
Sbjct: 62 IPSITWEHAGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVILQ 121
Query: 468 C 468
C
Sbjct: 122 C 122
>pdb|3O3U|N Chain N, Crystal Structure Of Human Receptor For Advanced Glycation
Endproducts (Rage)
Length = 581
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 17/150 (11%)
Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEIN---- 613
+N+ A+IG +L+C+ P+ + W G EA + +++ GG +
Sbjct: 374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA---WKVLSPQGGGPWDSVARVLP 430
Query: 614 ----YLEAV---DDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG 666
+L AV D+G ++C A + +G + S V V KP V+S +
Sbjct: 431 NGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPG--KPEIVDSASELTAGVP 488
Query: 667 LVSFECKVVG-FPTPTLQWFKDNEELKPGD 695
C G +P TL W D + L P +
Sbjct: 489 NKVGTCVSEGSYPAGTLSWHLDGKPLVPNE 518
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 12/78 (15%)
Query: 858 LSEGGAVNLECKVIGVPQPTLKWF-KDGRELKAGDIHKIISG-EDGTCCL--------GI 907
+SEG L+C+ P ++KW +G L H IS DGT G+
Sbjct: 19 ISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGV 76
Query: 908 YTCEAHNCMGTTSSSAAL 925
YTC N G +++SA L
Sbjct: 77 YTCMVTNVAGNSNASAYL 94
>pdb|4DKD|C Chain C, Crystal Structure Of Human Interleukin-34 Bound To Human
Csf-1r
Length = 292
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 14/118 (11%)
Query: 124 FELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDL---NNTIPFSFR 180
L V+ +P PA ++ G A+++ S + + FD+ +N +
Sbjct: 175 IRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVC---SASSVDVNFDVFLQHNNTKLAIP 231
Query: 181 AQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG-YSTAKFELSVES 237
Q D NR++ + LN+ +V G YS ASN G +ST+ F VES
Sbjct: 232 QQSD--FHNNRYQKV-----LTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVES 282
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 14/118 (11%)
Query: 231 FELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDL---NNTIPFSFR 287
L V+ +P PA ++ G A+++ S + + FD+ +N +
Sbjct: 175 IRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVC---SASSVDVNFDVFLQHNNTKLAIP 231
Query: 288 AQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG-YSTAKFELSVES 344
Q D NR++ + LN+ +V G YS ASN G +ST+ F VES
Sbjct: 232 QQSD--FHNNRYQKV-----LTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVES 282
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 8/133 (6%)
Query: 759 QATVNEEFKFTVQVSISPEPK-VSWFRDDQQVVESDN--VKILKETLGVCHLKIHALEVA 815
+ +V E F QV+ + K +SWF + + + + + ++ L I+ +
Sbjct: 13 EISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANID 72
Query: 816 DQAEWKCIATNDFG-QSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVP 874
D +KC+ T + G QS + +K+ +K +E K EG + C V+
Sbjct: 73 DAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFK----EGEDAVIVCDVVSSL 128
Query: 875 QPTLKWFKDGREL 887
PT+ W GR++
Sbjct: 129 PPTIIWKHKGRDV 141
>pdb|1A0C|A Chain A, Xylose Isomerase From Thermoanaerobacterium
Thermosulfurigenes
pdb|1A0C|B Chain B, Xylose Isomerase From Thermoanaerobacterium
Thermosulfurigenes
pdb|1A0C|C Chain C, Xylose Isomerase From Thermoanaerobacterium
Thermosulfurigenes
pdb|1A0C|D Chain D, Xylose Isomerase From Thermoanaerobacterium
Thermosulfurigenes
Length = 438
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 101 VRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVE-- 158
+ ++ GG V GY T +E ++ + F+ D A ++G + L+E
Sbjct: 175 ITKELGGENYVFWGGREGYETL-LNTDMEFELDNFARFLHMAVDYAKEIGFEGQFLIEPK 233
Query: 159 IRSPTEIKCQFDLNNTIPF 177
+ PT+ + FD+ N + F
Sbjct: 234 PKEPTKHQYDFDVANVLAF 252
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 208 VRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVE-- 265
+ ++ GG V GY T +E ++ + F+ D A ++G + L+E
Sbjct: 175 ITKELGGENYVFWGGREGYETL-LNTDMEFELDNFARFLHMAVDYAKEIGFEGQFLIEPK 233
Query: 266 IRSPTEIKCQFDLNNTIPF 284
+ PT+ + FD+ N + F
Sbjct: 234 PKEPTKHQYDFDVANVLAF 252
>pdb|1GVH|A Chain A, The X-Ray Structure Of Ferric Escherichia Coli
Flavohemoglobin Reveals An Unespected Geometry Of The
Distal Heme Pocket
Length = 396
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 607 GYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG 666
G++ ++N+ A ++G+ A VK+ + YR+P + K +G
Sbjct: 285 GHTAQVNWFHAAENGDVHAFADE---VKELGQSLPRFTAHTWYRQPSEADRAKGQFDSEG 341
Query: 667 LVSFECKVVGFPTPTLQWF 685
L+ F PT+Q++
Sbjct: 342 LMDLSKLEGAFSDPTMQFY 360
>pdb|2EO1|A Chain A, Solution Structure Of The Ig Domain Of Human Obscn Protein
Length = 102
Score = 30.0 bits (66), Expect = 7.9, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 855 KAVLSEGGA-VNLECKVIGVPQPTLKWFKDGRELKA---------GDIHKIISGEDGTCC 904
+ V +E GA L C+V Q + W+KDG++L + G +++ + G
Sbjct: 19 REVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAE 77
Query: 905 LGIYTCEA 912
G Y+CEA
Sbjct: 78 AGEYSCEA 85
>pdb|3V0W|H Chain H, Crystal Structure Of Fab Wn1 222-5 In Complex With Lps
Length = 219
Score = 29.6 bits (65), Expect = 9.1, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 15/87 (17%)
Query: 804 VCHLKIHALEVADQAEWKCIA-----TNDF---GQSITSCFLKLNVPKHYKKPKFLEELK 855
+ HL+++AL D A + C+ T D+ G S+T K P Y +
Sbjct: 80 ILHLQMNALRTEDSATYYCVRQGRGYTLDYWGQGTSVTVSSAKTTAPSVYPLAPVCGD-- 137
Query: 856 AVLSEGGAVNLECKVIG-VPQP-TLKW 880
+ G +V L C V G P+P TL W
Sbjct: 138 ---TTGSSVTLGCLVKGYFPEPVTLTW 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,059,965
Number of Sequences: 62578
Number of extensions: 1364368
Number of successful extensions: 5455
Number of sequences better than 100.0: 153
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 3949
Number of HSP's gapped (non-prelim): 977
length of query: 1075
length of database: 14,973,337
effective HSP length: 109
effective length of query: 966
effective length of database: 8,152,335
effective search space: 7875155610
effective search space used: 7875155610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)